Query gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 33 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:25:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781150.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jve_A PROD1; LY-6, three-fin 32.9 9 0.00027 20.5 -0.3 24 8-31 27-59 (91) 2 >3bh0_A DNAB-like replicative 32.1 32 0.00095 17.7 2.4 30 3-32 232-261 (266) 3 >2r6a_A DNAB helicase, replica 17.3 94 0.0028 15.4 2.4 27 3-29 224-250 (264) 4 >2q6t_A DNAB replication FORK 14.1 1.3E+02 0.0037 14.7 2.5 27 3-29 235-261 (266) 5 >3cpx_A Aminopeptidase, M42 fa 12.7 57 0.0017 16.5 0.3 23 4-26 25-47 (61) 6 >3bgw_A DNAB-like replicative 10.5 1.7E+02 0.0049 14.1 2.3 27 3-29 227-253 (261) 7 >2i5i_A UPF0249 protein EF_304 10.1 1.1E+02 0.0032 15.1 1.0 20 7-26 27-46 (263) 8 >1kae_A HDH, histidinol dehydr 7.6 1.6E+02 0.0046 14.3 1.0 18 4-21 90-107 (237) 9 >1a0i_A DNA ligase; DNA replic 7.3 2.2E+02 0.0066 13.5 1.6 19 15-33 110-128 (158) 10 >1nlf_A Regulatory protein REP 6.8 2.4E+02 0.0072 13.3 2.2 24 3-26 214-237 (257) No 1 >>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens} (A:) Probab=32.94 E-value=9 Score=20.52 Aligned_cols=24 Identities=50% Similarity=0.822 Sum_probs=17.6 Q ss_pred CCCCCCEEE---------EEEEECCHHHHHCCC Q ss_conf 237880015---------544315657750455 Q gi|254781150|r 8 QRNGPIESV---------SLFVDMPYSVIKDGK 31 (33) Q Consensus 8 qrngpiesv---------slfvdmpysvikdgk 31 (33) .|||.-..| .|||.+|||-|..-| T Consensus 27 trngddrtvttcaeeqtrclfvqlpyseiqeck 59 (91) T 2jve_A 27 TRNGDDRTVTTCAEEQTRCLFVQLPYSEIQECK 59 (91) T ss_dssp ECSSSCCEEEEECSTTCEEEEEECSSSEEEEEE T ss_pred CCCCCCCEEEHHHHHHCEEEEEECCHHHHHHHH T ss_conf 016987604201422124478977788988738 No 2 >>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315) Probab=32.13 E-value=32 Score=17.73 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=24.0 Q ss_pred EEEEECCCCCCEEEEEEEECCHHHHHCCCC Q ss_conf 476512378800155443156577504557 Q gi|254781150|r 3 FIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32 (33) Q Consensus 3 fivakqrngpiesvslfvdmpysvikdgke 32 (33) ..++|.|+||..++.++.+..++-|.+..+ T Consensus 232 i~i~K~r~g~~~~~~~~f~~~~~~~~~~~~ 261 (266) T 3bh0_A 232 VIIAKHRDGPVGTVSLAFIKEYGNFVNLER 261 (266) T ss_dssp EEEEEETTSCCEEEEEEEEGGGTEEEECC- T ss_pred EEEEEECCCCCCEEEEEEECCCCEEECCCC T ss_conf 999864589985699999888883807642 No 3 >>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454) Probab=17.33 E-value=94 Score=15.36 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=21.7 Q ss_pred EEEEECCCCCCEEEEEEEECCHHHHHC Q ss_conf 476512378800155443156577504 Q gi|254781150|r 3 FIVAKQRNGPIESVSLFVDMPYSVIKD 29 (33) Q Consensus 3 fivakqrngpiesvslfvdmpysvikd 29 (33) +.+.|.|+||...+.++.+..+.-+.+ T Consensus 224 l~i~K~r~g~~~~~~~~~~~~~~~~~~ 250 (264) T 2r6a_A 224 IIIAKQRNGPVGTVQLAFIKEYNKFVN 250 (264) T ss_dssp EEEEEESSSCCEEEEEEEETTTTEEEC T ss_pred EEEEECCCCCCCEEEEEEECCCCEEEC T ss_conf 999842889970699999778884847 No 4 >>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444) Probab=14.07 E-value=1.3e+02 Score=14.73 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=20.9 Q ss_pred EEEEECCCCCCEEEEEEEECCHHHHHC Q ss_conf 476512378800155443156577504 Q gi|254781150|r 3 FIVAKQRNGPIESVSLFVDMPYSVIKD 29 (33) Q Consensus 3 fivakqrngpiesvslfvdmpysvikd 29 (33) +.+.|.|+||...+.++.+.-++-|.+ T Consensus 235 ~~i~K~R~~~~~~~~~~f~~~~~~i~~ 261 (266) T 2q6t_A 235 IIVGKQRNGPTGTVELQFHASHVRFND 261 (266) T ss_dssp EEEEECSSSCCEEEEEEEETTTTEEEC T ss_pred EEEEECCCCCCEEEEEEEECCCCEEEC T ss_conf 999834799980699999779872833 No 5 >>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structural genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} (A:88-148) Probab=12.66 E-value=57 Score=16.47 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=18.9 Q ss_pred EEEECCCCCCEEEEEEEECCHHH Q ss_conf 76512378800155443156577 Q gi|254781150|r 4 IVAKQRNGPIESVSLFVDMPYSV 26 (33) Q Consensus 4 ivakqrngpiesvslfvdmpysv 26 (33) .|.|..||.||.|--.||-.+.. T Consensus 25 lvgkdsngdiegvlkivdeew~l 47 (61) T 3cpx_A 25 LVGKDSNGDIEGVLKIVDEEWXL 47 (61) T ss_dssp EEEEETTEEEEEEEECGGGSCEE T ss_pred EEEECCCCCCCCCCCCCCCEECC T ss_conf 99992677221432442211132 No 6 >>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444) Probab=10.47 E-value=1.7e+02 Score=14.12 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=20.5 Q ss_pred EEEEECCCCCCEEEEEEEECCHHHHHC Q ss_conf 476512378800155443156577504 Q gi|254781150|r 3 FIVAKQRNGPIESVSLFVDMPYSVIKD 29 (33) Q Consensus 3 fivakqrngpiesvslfvdmpysvikd 29 (33) ..++|.|+||...+.+..+..++-+.+ T Consensus 227 i~v~K~r~g~~~~~~~~f~~~~~~~~~ 253 (261) T 3bgw_A 227 VIIAKHRDGPVGTVSLAFIKEYGNFVN 253 (261) T ss_dssp EEEEEESSSCCEEEEEEEETTTTEEEC T ss_pred EEEEECCCCCCEEEEEEEECCCCEECC T ss_conf 999821799971699999788782716 No 7 >>2i5i_A UPF0249 protein EF_3048; hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} (A:) Probab=10.13 E-value=1.1e+02 Score=15.08 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=16.5 Q ss_pred ECCCCCCEEEEEEEECCHHH Q ss_conf 12378800155443156577 Q gi|254781150|r 7 KQRNGPIESVSLFVDMPYSV 26 (33) Q Consensus 7 kqrngpiesvslfvdmpysv 26 (33) --++|-+.|+|+.|.||+.- T Consensus 27 ~~~~G~l~s~slM~~~p~~~ 46 (263) T 2i5i_A 27 AHKRGVVTSTTALPTSPYFL 46 (263) T ss_dssp HHHSSSCCEEEECTTSTTHH T ss_pred HHHCCCCEEEEECCCCHHHH T ss_conf 99879865878625880699 No 8 >>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domains, HISD, L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} (A:26-234,A:369-396) Probab=7.62 E-value=1.6e+02 Score=14.27 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=15.1 Q ss_pred EEEECCCCCCEEEEEEEE Q ss_conf 765123788001554431 Q gi|254781150|r 4 IVAKQRNGPIESVSLFVD 21 (33) Q Consensus 4 ivakqrngpiesvslfvd 21 (33) +..-||.-||++|.++|- T Consensus 90 v~~g~r~~Pi~rvGlYVP 107 (237) T 1kae_A 90 VRCQQVTRPVASVGLYIP 107 (237) T ss_dssp EEEEEEEEECSEEEEECC T ss_pred EEEEEEEEEHHHCEEECC T ss_conf 169997666324125415 No 9 >>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Bacteriophage T7} (A:35-192) Probab=7.28 E-value=2.2e+02 Score=13.49 Aligned_cols=19 Identities=16% Similarity=0.632 Sum_probs=16.4 Q ss_pred EEEEEEECCHHHHHCCCCC Q ss_conf 1554431565775045579 Q gi|254781150|r 15 SVSLFVDMPYSVIKDGKEW 33 (33) Q Consensus 15 svslfvdmpysvikdgkew 33 (33) .|-+|--||+.+|.+|++. T Consensus 110 kVvvY~v~pl~~i~~g~d~ 128 (158) T 1a0i_A 110 HIKLYAILPLHIVESGEDC 128 (158) T ss_dssp EEEEEEEEEHHHHHHCCCE T ss_pred EEEEEEEECCCCCCCCCCC T ss_conf 9999899845455555430 No 10 >>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279) Probab=6.78 E-value=2.4e+02 Score=13.27 Aligned_cols=24 Identities=25% Similarity=0.128 Sum_probs=18.8 Q ss_pred EEEEECCCCCCEEEEEEEECCHHH Q ss_conf 476512378800155443156577 Q gi|254781150|r 3 FIVAKQRNGPIESVSLFVDMPYSV 26 (33) Q Consensus 3 fivakqrngpiesvslfvdmpysv 26 (33) ..+.|.|+||...+..|....+.+ T Consensus 214 l~i~K~r~~~~~~~~~~~i~~~g~ 237 (257) T 1nlf_A 214 FGVSKANYGAPFADRWFRRHDGGV 237 (257) T ss_dssp EEEEECSSSSCCCCEEEEECGGGC T ss_pred EEEEEECCCCCCCCEEEEECCCCC T ss_conf 999751589998743999868877 Done!