Query         gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:25:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781150.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jve_A PROD1; LY-6, three-fin  32.9       9 0.00027   20.5  -0.3   24    8-31     27-59  (91)
  2 >3bh0_A DNAB-like replicative   32.1      32 0.00095   17.7   2.4   30    3-32    232-261 (266)
  3 >2r6a_A DNAB helicase, replica  17.3      94  0.0028   15.4   2.4   27    3-29    224-250 (264)
  4 >2q6t_A DNAB replication FORK   14.1 1.3E+02  0.0037   14.7   2.5   27    3-29    235-261 (266)
  5 >3cpx_A Aminopeptidase, M42 fa  12.7      57  0.0017   16.5   0.3   23    4-26     25-47  (61)
  6 >3bgw_A DNAB-like replicative   10.5 1.7E+02  0.0049   14.1   2.3   27    3-29    227-253 (261)
  7 >2i5i_A UPF0249 protein EF_304  10.1 1.1E+02  0.0032   15.1   1.0   20    7-26     27-46  (263)
  8 >1kae_A HDH, histidinol dehydr   7.6 1.6E+02  0.0046   14.3   1.0   18    4-21     90-107 (237)
  9 >1a0i_A DNA ligase; DNA replic   7.3 2.2E+02  0.0066   13.5   1.6   19   15-33    110-128 (158)
 10 >1nlf_A Regulatory protein REP   6.8 2.4E+02  0.0072   13.3   2.2   24    3-26    214-237 (257)

No 1  
>>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens} (A:)
Probab=32.94  E-value=9  Score=20.52  Aligned_cols=24  Identities=50%  Similarity=0.822  Sum_probs=17.6

Q ss_pred             CCCCCCEEE---------EEEEECCHHHHHCCC
Q ss_conf             237880015---------544315657750455
Q gi|254781150|r    8 QRNGPIESV---------SLFVDMPYSVIKDGK   31 (33)
Q Consensus         8 qrngpiesv---------slfvdmpysvikdgk   31 (33)
                      .|||.-..|         .|||.+|||-|..-|
T Consensus        27 trngddrtvttcaeeqtrclfvqlpyseiqeck   59 (91)
T 2jve_A           27 TRNGDDRTVTTCAEEQTRCLFVQLPYSEIQECK   59 (91)
T ss_dssp             ECSSSCCEEEEECSTTCEEEEEECSSSEEEEEE
T ss_pred             CCCCCCCEEEHHHHHHCEEEEEECCHHHHHHHH
T ss_conf             016987604201422124478977788988738


No 2  
>>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315)
Probab=32.13  E-value=32  Score=17.73  Aligned_cols=30  Identities=33%  Similarity=0.504  Sum_probs=24.0

Q ss_pred             EEEEECCCCCCEEEEEEEECCHHHHHCCCC
Q ss_conf             476512378800155443156577504557
Q gi|254781150|r    3 FIVAKQRNGPIESVSLFVDMPYSVIKDGKE   32 (33)
Q Consensus         3 fivakqrngpiesvslfvdmpysvikdgke   32 (33)
                      ..++|.|+||..++.++.+..++-|.+..+
T Consensus       232 i~i~K~r~g~~~~~~~~f~~~~~~~~~~~~  261 (266)
T 3bh0_A          232 VIIAKHRDGPVGTVSLAFIKEYGNFVNLER  261 (266)
T ss_dssp             EEEEEETTSCCEEEEEEEEGGGTEEEECC-
T ss_pred             EEEEEECCCCCCEEEEEEECCCCEEECCCC
T ss_conf             999864589985699999888883807642


No 3  
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454)
Probab=17.33  E-value=94  Score=15.36  Aligned_cols=27  Identities=41%  Similarity=0.631  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCEEEEEEEECCHHHHHC
Q ss_conf             476512378800155443156577504
Q gi|254781150|r    3 FIVAKQRNGPIESVSLFVDMPYSVIKD   29 (33)
Q Consensus         3 fivakqrngpiesvslfvdmpysvikd   29 (33)
                      +.+.|.|+||...+.++.+..+.-+.+
T Consensus       224 l~i~K~r~g~~~~~~~~~~~~~~~~~~  250 (264)
T 2r6a_A          224 IIIAKQRNGPVGTVQLAFIKEYNKFVN  250 (264)
T ss_dssp             EEEEEESSSCCEEEEEEEETTTTEEEC
T ss_pred             EEEEECCCCCCCEEEEEEECCCCEEEC
T ss_conf             999842889970699999778884847


No 4  
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:179-444)
Probab=14.07  E-value=1.3e+02  Score=14.73  Aligned_cols=27  Identities=41%  Similarity=0.545  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCEEEEEEEECCHHHHHC
Q ss_conf             476512378800155443156577504
Q gi|254781150|r    3 FIVAKQRNGPIESVSLFVDMPYSVIKD   29 (33)
Q Consensus         3 fivakqrngpiesvslfvdmpysvikd   29 (33)
                      +.+.|.|+||...+.++.+.-++-|.+
T Consensus       235 ~~i~K~R~~~~~~~~~~f~~~~~~i~~  261 (266)
T 2q6t_A          235 IIVGKQRNGPTGTVELQFHASHVRFND  261 (266)
T ss_dssp             EEEEECSSSCCEEEEEEEETTTTEEEC
T ss_pred             EEEEECCCCCCEEEEEEEECCCCEEEC
T ss_conf             999834799980699999779872833


No 5  
>>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structural genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} (A:88-148)
Probab=12.66  E-value=57  Score=16.47  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=18.9

Q ss_pred             EEEECCCCCCEEEEEEEECCHHH
Q ss_conf             76512378800155443156577
Q gi|254781150|r    4 IVAKQRNGPIESVSLFVDMPYSV   26 (33)
Q Consensus         4 ivakqrngpiesvslfvdmpysv   26 (33)
                      .|.|..||.||.|--.||-.+..
T Consensus        25 lvgkdsngdiegvlkivdeew~l   47 (61)
T 3cpx_A           25 LVGKDSNGDIEGVLKIVDEEWXL   47 (61)
T ss_dssp             EEEEETTEEEEEEEECGGGSCEE
T ss_pred             EEEECCCCCCCCCCCCCCCEECC
T ss_conf             99992677221432442211132


No 6  
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:184-444)
Probab=10.47  E-value=1.7e+02  Score=14.12  Aligned_cols=27  Identities=37%  Similarity=0.594  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCEEEEEEEECCHHHHHC
Q ss_conf             476512378800155443156577504
Q gi|254781150|r    3 FIVAKQRNGPIESVSLFVDMPYSVIKD   29 (33)
Q Consensus         3 fivakqrngpiesvslfvdmpysvikd   29 (33)
                      ..++|.|+||...+.+..+..++-+.+
T Consensus       227 i~v~K~r~g~~~~~~~~f~~~~~~~~~  253 (261)
T 3bgw_A          227 VIIAKHRDGPVGTVSLAFIKEYGNFVN  253 (261)
T ss_dssp             EEEEEESSSCCEEEEEEEETTTTEEEC
T ss_pred             EEEEECCCCCCEEEEEEEECCCCEECC
T ss_conf             999821799971699999788782716


No 7  
>>2i5i_A UPF0249 protein EF_3048; hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} (A:)
Probab=10.13  E-value=1.1e+02  Score=15.08  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=16.5

Q ss_pred             ECCCCCCEEEEEEEECCHHH
Q ss_conf             12378800155443156577
Q gi|254781150|r    7 KQRNGPIESVSLFVDMPYSV   26 (33)
Q Consensus         7 kqrngpiesvslfvdmpysv   26 (33)
                      --++|-+.|+|+.|.||+.-
T Consensus        27 ~~~~G~l~s~slM~~~p~~~   46 (263)
T 2i5i_A           27 AHKRGVVTSTTALPTSPYFL   46 (263)
T ss_dssp             HHHSSSCCEEEECTTSTTHH
T ss_pred             HHHCCCCEEEEECCCCHHHH
T ss_conf             99879865878625880699


No 8  
>>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domains, HISD, L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} (A:26-234,A:369-396)
Probab=7.62  E-value=1.6e+02  Score=14.27  Aligned_cols=18  Identities=28%  Similarity=0.584  Sum_probs=15.1

Q ss_pred             EEEECCCCCCEEEEEEEE
Q ss_conf             765123788001554431
Q gi|254781150|r    4 IVAKQRNGPIESVSLFVD   21 (33)
Q Consensus         4 ivakqrngpiesvslfvd   21 (33)
                      +..-||.-||++|.++|-
T Consensus        90 v~~g~r~~Pi~rvGlYVP  107 (237)
T 1kae_A           90 VRCQQVTRPVASVGLYIP  107 (237)
T ss_dssp             EEEEEEEEECSEEEEECC
T ss_pred             EEEEEEEEEHHHCEEECC
T ss_conf             169997666324125415


No 9  
>>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Bacteriophage T7} (A:35-192)
Probab=7.28  E-value=2.2e+02  Score=13.49  Aligned_cols=19  Identities=16%  Similarity=0.632  Sum_probs=16.4

Q ss_pred             EEEEEEECCHHHHHCCCCC
Q ss_conf             1554431565775045579
Q gi|254781150|r   15 SVSLFVDMPYSVIKDGKEW   33 (33)
Q Consensus        15 svslfvdmpysvikdgkew   33 (33)
                      .|-+|--||+.+|.+|++.
T Consensus       110 kVvvY~v~pl~~i~~g~d~  128 (158)
T 1a0i_A          110 HIKLYAILPLHIVESGEDC  128 (158)
T ss_dssp             EEEEEEEEEHHHHHHCCCE
T ss_pred             EEEEEEEECCCCCCCCCCC
T ss_conf             9999899845455555430


No 10 
>>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} (A:23-279)
Probab=6.78  E-value=2.4e+02  Score=13.27  Aligned_cols=24  Identities=25%  Similarity=0.128  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCEEEEEEEECCHHH
Q ss_conf             476512378800155443156577
Q gi|254781150|r    3 FIVAKQRNGPIESVSLFVDMPYSV   26 (33)
Q Consensus         3 fivakqrngpiesvslfvdmpysv   26 (33)
                      ..+.|.|+||...+..|....+.+
T Consensus       214 l~i~K~r~~~~~~~~~~~i~~~g~  237 (257)
T 1nlf_A          214 FGVSKANYGAPFADRWFRRHDGGV  237 (257)
T ss_dssp             EEEEECSSSSCCCCEEEEECGGGC
T ss_pred             EEEEEECCCCCCCCEEEEECCCCC
T ss_conf             999751589998743999868877


Done!