RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781150|ref|YP_003065563.1| hypothetical protein
CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)



>gnl|CDD|30653 COG0305, DnaB, Replicative DNA helicase [DNA replication,
           recombination, and repair].
          Length = 435

 Score = 31.3 bits (71), Expect = 0.062
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 2   DFIVAKQRNGPIESVSLFVDMPYS 25
           + IVAK RNGP  +V L  D  ++
Sbjct: 405 EVIVAKNRNGPTGTVKLAFDPQFT 428


>gnl|CDD|29985 cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric
           helicase DnaB unwinds the DNA duplex at the  chromosome
           replication fork. Although the mechanism by which DnaB
           both couples ATP hydrolysis to translocation along DNA
           and denatures the duplex is unknown, a change in the
           quaternary structure of the protein involving
           dimerization of the N-terminal domain has been observed
           and may occur during the enzymatic cycle. This
           C-terminal domain contains an ATP-binding site and is
           therefore probably the site of ATP hydrolysis..
          Length = 242

 Score = 29.4 bits (66), Expect = 0.25
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 2   DFIVAKQRNGPIESVSL 18
           + IVAK RNGP  +V L
Sbjct: 222 EIIVAKNRNGPTGTVEL 238


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 380,677
Number of extensions: 8398
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 3
Length of query: 33
Length of database: 6,263,737
Length adjustment: 7
Effective length of query: 26
Effective length of database: 6,112,474
Effective search space: 158924324
Effective search space used: 158924324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)