RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781150|ref|YP_003065563.1| hypothetical protein
CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)



>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
           aquaticus} (A:179-444)
          Length = 266

 Score = 27.5 bits (59), Expect = 0.71
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 2   DFIVAKQRNGPIESVSLFVDMPYSVIKD 29
           + IV KQRNGP  +V L     +    D
Sbjct: 234 EIIVGKQRNGPTGTVELQFHASHVRFND 261


>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
           {Bacillus phage SPP1} (A:50-315)
          Length = 266

 Score = 26.7 bits (57), Expect = 1.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 4   IVAKQRNGPIESVSLFVDMPYSVIKD 29
           I+AK R+GP+ +VSL     Y    +
Sbjct: 233 IIAKHRDGPVGTVSLAFIKEYGNFVN 258


>2r6a_A DNAB helicase, replicative helicase; replication, DNAB;
           2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A
           2r6d_A 2r6e_A 2vyf_A 2vye_A (A:191-454)
          Length = 264

 Score = 26.3 bits (56), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 3   FIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32
            I+AKQRNGP+ +V L     Y+   + + 
Sbjct: 224 IIIAKQRNGPVGTVQLAFIKEYNKFVNLER 253


>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
           {Bacillus phage SPP1} (A:184-444)
          Length = 261

 Score = 25.6 bits (54), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 4   IVAKQRNGPIESVSLFVDMPYSVIKD 29
           I+AK R+GP+ +VSL     Y    +
Sbjct: 228 IIAKHRDGPVGTVSLAFIKEYGNFVN 253


>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
           changes, replication; 1.95A {Escherichia coli}
           (A:23-279)
          Length = 257

 Score = 25.2 bits (53), Expect = 2.9
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 3   FIVAKQRNGPIESVSLFVDMPYSVI 27
           F V+K   G   +   F      V+
Sbjct: 214 FGVSKANYGAPFADRWFRRHDGGVL 238


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0364    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 240,705
Number of extensions: 4632
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 33
Length of database: 4,956,049
Length adjustment: 7
Effective length of query: 26
Effective length of database: 4,719,414
Effective search space: 122704764
Effective search space used: 122704764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.0 bits)