RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62] (33 letters) >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Length = 315 Score = 30.3 bits (67), Expect = 0.12 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29 ++ I+AK R+GP+ +VSL Y + Sbjct: 279 VEVIIAKHRDGPVGTVSLAFIKEYGNFVN 307 >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Length = 444 Score = 30.0 bits (66), Expect = 0.14 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29 ++ I+AK R+GP+ +VSL Y + Sbjct: 408 VEVIIAKHRDGPVGTVSLAFIKEYGNFVN 436 >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Length = 454 Score = 29.5 bits (65), Expect = 0.18 Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29 ++ I+AKQRNGP+ +V L Y+ + Sbjct: 412 IEIIIAKQRNGPVGTVQLAFIKEYNKFVN 440 >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Length = 444 Score = 29.1 bits (64), Expect = 0.26 Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 1 MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29 + IV KQRNGP +V L + D Sbjct: 411 AEIIVGKQRNGPTGTVELQFHASHVRFND 439 >2i5i_A UPF0249 protein EF_3048; hypothetical protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis V583} SCOP: c.6.2.8 Length = 263 Score = 23.9 bits (51), Expect = 8.8 Identities = 4/16 (25%), Positives = 7/16 (43%) Query: 9 RNGPIESVSLFVDMPY 24 + G + S + PY Sbjct: 29 KRGVVTSTTALPTSPY 44 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.138 0.421 Gapped Lambda K H 0.267 0.0439 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 276,702 Number of extensions: 5631 Number of successful extensions: 13 Number of sequences better than 10.0: 1 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 6 Length of query: 33 Length of database: 5,693,230 Length adjustment: 7 Effective length of query: 26 Effective length of database: 5,523,522 Effective search space: 143611572 Effective search space used: 143611572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.8 bits)