Query gi|254781151|ref|YP_003065564.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:13:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781151.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2jxf_A NS4B(40-69), genome po 35.5 15 0.00045 19.4 1.1 12 12-23 15-26 (30)
2 >2jn6_A Protein CGL2762, trans 16.4 74 0.0022 15.8 1.7 21 9-29 4-24 (56)
3 >1qb5_D Protein (heat labIle e 11.7 1.1E+02 0.0032 15.0 1.4 15 9-23 53-67 (99)
4 >3c8c_A Methyl-accepting chemo 11.5 60 0.0018 16.3 0.1 10 2-11 46-55 (100)
5 >3fos_A Sensor protein; sensor 8.2 1.2E+02 0.0036 14.7 0.6 11 2-12 46-56 (100)
6 >1t62_A Conserved hypothetical 8.0 1.6E+02 0.0049 14.0 1.2 13 23-35 45-57 (147)
7 >1yqd_A Sinapyl alcohol dehydr 7.9 2.1E+02 0.0062 13.5 2.0 34 3-36 124-157 (166)
8 >3dpt_A ROCO, RAB family prote 7.6 2.2E+02 0.0064 13.4 2.1 24 9-32 49-72 (88)
9 >1vq8_L 50S ribosomal protein 7.5 1.2E+02 0.0036 14.7 0.3 11 3-13 39-49 (165)
10 >3f2b_A DNA-directed DNA polym 7.1 2E+02 0.0059 13.6 1.3 15 7-21 105-120 (203)
No 1
>>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic} (A:)
Probab=35.45 E-value=15 Score=19.39 Aligned_cols=12 Identities=58% Similarity=0.609 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHH
Q ss_conf 276875567654
Q gi|254781151|r 12 PANFISGILELT 23 (38)
Q Consensus 12 panfisgilelt 23 (38)
--||||||--|.
T Consensus 15 mwnfisGiqYLA 26 (30)
T 2jxf_A 15 MWNFISGIQYLA 26 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999984
No 2
>>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Probab=16.44 E-value=74 Score=15.80 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.7
Q ss_pred HHCCHHHHHHHHHHHHHCCCC
Q ss_conf 217276875567654002484
Q gi|254781151|r 9 KRYPANFISGILELTLEQKGA 29 (38)
Q Consensus 9 krypanfisgileltleqkga 29 (38)
++|+..|---+.++.+++.|.
T Consensus 4 r~ys~EFK~~aV~l~~~~~g~ 24 (56)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA 24 (56)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS
T ss_pred CCCCHHHHHHHHHHHHHCCCC
T ss_conf 989999999999999983898
No 3
>>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} (D:)
Probab=11.66 E-value=1.1e+02 Score=14.97 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.6
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 217276875567654
Q gi|254781151|r 9 KRYPANFISGILELT 23 (38)
Q Consensus 9 krypanfisgilelt 23 (38)
|.||.||.||-..-+
T Consensus 53 ~dypdn~~s~e~rk~ 67 (99)
T 1qb5_D 53 KDYPDNVMTAEMRKI 67 (99)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 879702555899999
No 4
>>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str} (A:44-143)
Probab=11.47 E-value=60 Score=16.30 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=7.0
Q ss_pred CCCCCHHHHC
Q ss_conf 8888003217
Q gi|254781151|r 2 VNNRPWYKRY 11 (38)
Q Consensus 2 vnnrpwykry 11 (38)
..+||||+.-
T Consensus 46 ~~~r~Wy~~a 55 (100)
T 3c8c_A 46 PRVRPWYKDA 55 (100)
T ss_dssp GGGSHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 7669899999
No 5
>>3fos_A Sensor protein; sensor histidine kinase domain, bacillus subtilis subsp. subtilis STR. 168, PSI-2, protein structure initiative; 2.48A {Bacillus subtilis subsp} (A:47-146)
Probab=8.17 E-value=1.2e+02 Score=14.72 Aligned_cols=11 Identities=9% Similarity=0.465 Sum_probs=7.9
Q ss_pred CCCCCHHHHCC
Q ss_conf 88880032172
Q gi|254781151|r 2 VNNRPWYKRYP 12 (38)
Q Consensus 2 vnnrpwykryp 12 (38)
+.+||||+.--
T Consensus 46 ~~~r~wf~~a~ 56 (100)
T 3fos_A 46 LADRSFFIKAK 56 (100)
T ss_dssp CTTSHHHHHHH
T ss_pred HHHCHHHHHHH
T ss_conf 34463677776
No 6
>>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein structure initiative; 3.00A {Enterococcus faecalis V583} (A:20-166)
Probab=7.95 E-value=1.6e+02 Score=14.03 Aligned_cols=13 Identities=54% Similarity=0.922 Sum_probs=9.8
Q ss_pred HHHCCCCEEEEEE
Q ss_conf 4002484366565
Q gi|254781151|r 23 TLEQKGAYSIILD 35 (38)
Q Consensus 23 tleqkgaysiild 35 (38)
.|.+-|.|+||||
T Consensus 45 ~lP~vG~~~IVlD 57 (147)
T 1t62_A 45 QLPKAGQYDIILD 57 (147)
T ss_dssp CCCCTTCEEEEEC
T ss_pred CCCCCCCEEEEEC
T ss_conf 8999788789985
No 7
>>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant defense, biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* (A:1-103,A:142-163,A:326-366)
Probab=7.95 E-value=2.1e+02 Score=13.49 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=30.4
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 8880032172768755676540024843665654
Q gi|254781151|r 3 NNRPWYKRYPANFISGILELTLEQKGAYSIILDL 36 (38)
Q Consensus 3 nnrpwykrypanfisgileltleqkgaysiildl 36 (38)
|-+||...+|..-|.-.+|--.+-|-.|-+.||.
T Consensus 124 ~i~p~ve~~~~~~~~~a~~~~~~g~~ryR~Vl~~ 157 (166)
T 1yqd_A 124 LDTADIEVISTDYLNTAMERLAKNDVRYRFVIDV 157 (166)
T ss_dssp TTCCCEEEECGGGHHHHHHHHHTTCCSSEEEECH
T ss_pred HHCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 7757679986999999999997699842899998
No 8
>>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum} (A:84-171)
Probab=7.63 E-value=2.2e+02 Score=13.41 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=18.2
Q ss_pred HHCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 217276875567654002484366
Q gi|254781151|r 9 KRYPANFISGILELTLEQKGAYSI 32 (38)
Q Consensus 9 krypanfisgileltleqkgaysi 32 (38)
+|||.++.+-+++|.-.-.=||.+
T Consensus 49 ~~yp~~~~~~ll~LmekFEl~~~l 72 (88)
T 3dpt_A 49 FTYTLLEQRYLLDIMKQFELCYDE 72 (88)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCEEC
T ss_pred CCCCHHHHHHHHHHHHHHCEEEEC
T ss_conf 588678899999999980957855
No 9
>>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (L:)
Probab=7.51 E-value=1.2e+02 Score=14.73 Aligned_cols=11 Identities=0% Similarity=-0.290 Sum_probs=8.4
Q ss_pred CCCCHHHHCCH
Q ss_conf 88800321727
Q gi|254781151|r 3 NNRPWYKRYPA 13 (38)
Q Consensus 3 nnrpwykrypa 13 (38)
...|||.|||-
T Consensus 39 gq~p~~~r~pK 49 (165)
T 1vq8_L 39 HEFHNHEPLGK 49 (165)
T ss_dssp TTCTTSCCSCC
T ss_pred CCCCCCCCCCC
T ss_conf 88714557422
No 10
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:690-775,A:856-972)
Probab=7.14 E-value=2e+02 Score=13.60 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHH-HCCHHHHHHHHH
Q ss_conf 032-172768755676
Q gi|254781151|r 7 WYK-RYPANFISGILE 21 (38)
Q Consensus 7 wyk-rypanfisgile 21 (38)
|+| .||+.|.+..|.
T Consensus 105 ylK~hYP~eFyaa~ls 120 (203)
T 3f2b_A 105 YFKVHHPLLYYASYFT 120 (203)
T ss_dssp HHHHHSHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHC
T ss_conf 9986066999999725
Done!