Query gi|254781151|ref|YP_003065564.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:29:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781151.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jxf_A NS4B(40-69), genome pol 35.6 11 0.00044 19.4 1.1 12 12-23 15-26 (30)
2 1qb5_D Protein (heat labIle en 11.7 76 0.0032 15.0 1.4 15 9-23 53-67 (99)
3 1t62_A Conserved hypothetical 8.5 1.1E+02 0.0045 14.2 1.2 13 23-35 64-76 (166)
4 2jys_A Protease/reverse transc 6.0 1.2E+02 0.0052 13.9 0.6 11 3-13 88-98 (107)
5 3e2v_A 3'-5'-exonuclease; stru 5.0 1.8E+02 0.0074 13.1 0.8 23 4-26 357-379 (401)
6 3nwp_A 6-phosphogluconolactona 4.2 2.5E+02 0.011 12.3 2.3 23 12-34 21-43 (233)
7 1tc5_A Probable eukaryotic D-a 4.1 1.1E+02 0.0044 14.2 -0.9 24 13-36 167-194 (194)
8 3oc6_A 6-phosphogluconolactona 4.1 2.6E+02 0.011 12.2 2.3 22 13-34 24-45 (248)
9 3lhi_A Putative 6-phosphogluco 3.9 2.7E+02 0.011 12.2 2.3 23 12-34 18-40 (232)
10 3cp0_A Membrane protein implic 3.9 1.7E+02 0.0071 13.2 0.0 10 3-12 2-11 (82)
No 1
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=35.58 E-value=11 Score=19.41 Aligned_cols=12 Identities=58% Similarity=0.609 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHH
Q ss_conf 276875567654
Q gi|254781151|r 12 PANFISGILELT 23 (38)
Q Consensus 12 panfisgilelt 23 (38)
--||||||--|.
T Consensus 15 mwnfisgiqyla 26 (30)
T 2jxf_A 15 MWNFISGIQYLA 26 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999984
No 2
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=11.66 E-value=76 Score=14.97 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.6
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 217276875567654
Q gi|254781151|r 9 KRYPANFISGILELT 23 (38)
Q Consensus 9 krypanfisgilelt 23 (38)
|.||.||.||-..-+
T Consensus 53 ~dypdn~~s~e~rk~ 67 (99)
T 1qb5_D 53 KDYPDNVMTAEMRKI 67 (99)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 879702555899999
No 3
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein structure initiative; 3.00A {Enterococcus faecalis V583} SCOP: b.122.1.4
Probab=8.47 E-value=1.1e+02 Score=14.22 Aligned_cols=13 Identities=54% Similarity=0.922 Sum_probs=10.1
Q ss_pred HHHCCCCEEEEEE
Q ss_conf 4002484366565
Q gi|254781151|r 23 TLEQKGAYSIILD 35 (38)
Q Consensus 23 tleqkgaysiild 35 (38)
.+.+.|.|+||||
T Consensus 64 ~lP~vG~~~IvlD 76 (166)
T 1t62_A 64 QLPKAGQYDIILD 76 (166)
T ss_dssp CCCCTTCEEEEEC
T ss_pred CCCCCCCEEEEEC
T ss_conf 8999788889985
No 4
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=6.00 E-value=1.2e+02 Score=13.86 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=8.3
Q ss_pred CCCCHHHHCCH
Q ss_conf 88800321727
Q gi|254781151|r 3 NNRPWYKRYPA 13 (38)
Q Consensus 3 nnrpwykrypa 13 (38)
+.-||||..|-
T Consensus 88 ~DiPW~~~~pL 98 (107)
T 2jys_A 88 SDVPWLMKKPL 98 (107)
T ss_dssp TTCHHHHSCCC
T ss_pred CCCCCCCCCCE
T ss_conf 67675247872
No 5
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789}
Probab=4.97 E-value=1.8e+02 Score=13.09 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=16.9
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHC
Q ss_conf 88003217276875567654002
Q gi|254781151|r 4 NRPWYKRYPANFISGILELTLEQ 26 (38)
Q Consensus 4 nrpwykrypanfisgileltleq 26 (38)
|.|+|-++-+..|+.+....+|.
T Consensus 357 NEP~~i~~v~~~iA~lk~~~~ee 379 (401)
T 3e2v_A 357 NEPCNMEQVAIVVSEVKDVDLAT 379 (401)
T ss_dssp CCGGGHHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 87657999999999762999999
No 6
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=4.16 E-value=2.5e+02 Score=12.25 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 27687556765400248436656
Q gi|254781151|r 12 PANFISGILELTLEQKGAYSIIL 34 (38)
Q Consensus 12 panfisgileltleqkgaysiil 34 (38)
-|++|...++-.++++|..+|.|
T Consensus 21 la~~i~~~l~~~i~~~~~~~l~l 43 (233)
T 3nwp_A 21 LASKIASQLQEAVDARGKASLVV 43 (233)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999998679889997
No 7
>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI, protein structure initiative; 1.93A {Leishmania major} SCOP: c.110.1.1
Probab=4.14 E-value=1.1e+02 Score=14.24 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=15.9
Q ss_pred HHHHHHHH----HHHHHCCCCEEEEEEE
Q ss_conf 76875567----6540024843665654
Q gi|254781151|r 13 ANFISGIL----ELTLEQKGAYSIILDL 36 (38)
Q Consensus 13 anfisgil----eltleqkgaysiildl 36 (38)
.+..+|.. .+.|+..|.+.|+||+
T Consensus 167 ~~V~tG~FGA~M~V~l~NdGPvT~ildi 194 (194)
T 1tc5_A 167 SRVISGTFGNRQGLRFESEGPFTHMFDI 194 (194)
T ss_dssp SCEEECCTTSCCCEEEEESCCCCEEEEC
T ss_pred CEEEECCCCCCEEEEEEECCCEEEEEEC
T ss_conf 6157661068607999967984999969
No 8
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=4.09 E-value=2.6e+02 Score=12.23 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7687556765400248436656
Q gi|254781151|r 13 ANFISGILELTLEQKGAYSIIL 34 (38)
Q Consensus 13 anfisgileltleqkgaysiil 34 (38)
|.+|...++-.++++|..+|+|
T Consensus 24 a~~i~~~i~~~i~~~~~~~l~l 45 (248)
T 3oc6_A 24 GDRLVDAISSAIGERGQATIVL 45 (248)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999998589989998
No 9
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=3.93 E-value=2.7e+02 Score=12.15 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 27687556765400248436656
Q gi|254781151|r 12 PANFISGILELTLEQKGAYSIIL 34 (38)
Q Consensus 12 panfisgileltleqkgaysiil 34 (38)
-|..|..+++-.++++|..+|.|
T Consensus 18 ~a~~i~~~l~~~i~~~~~~~i~l 40 (232)
T 3lhi_A 18 LADAVADALQGALDEKGGAVLAV 40 (232)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999999779989998
No 10
>3cp0_A Membrane protein implicated in regulation of membrane protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=3.86 E-value=1.7e+02 Score=13.19 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=7.7
Q ss_pred CCCCHHHHCC
Q ss_conf 8880032172
Q gi|254781151|r 3 NNRPWYKRYP 12 (38)
Q Consensus 3 nnrpwykryp 12 (38)
|-|||.+|+-
T Consensus 2 ~~Rp~l~r~~ 11 (82)
T 3cp0_A 2 NARPAIRKRL 11 (82)
T ss_dssp ----------
T ss_pred CCCHHHHHHC
T ss_conf 9675556433
Done!