RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781151|ref|YP_003065564.1| hypothetical protein
CLIBASIA_05290 [Candidatus Liberibacter asiaticus str. psy62]
         (38 letters)



>gnl|CDD|148622 pfam07120, DUF1376, Protein of unknown function (DUF1376).  This
          family consists of several hypothetical bacterial
          proteins of around 95 residues in length. The function
          of this family is unknown.
          Length = 88

 Score = 34.5 bits (80), Expect = 0.006
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 6  PWYKRYPANFISGILELTLEQKGAYSIILDLI 37
          P+Y  +  +F++    L+ E+ GAY+ +LD  
Sbjct: 1  PYYPLHIGDFLADTAHLSAEEHGAYTRLLDAY 32


>gnl|CDD|151091 pfam10546, P63C, P63C domain.  This domain was identified by Iyer
          and colleagues.
          Length = 94

 Score = 23.9 bits (52), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 5  RPWYKRYPANFISGILEL 22
          +PW KR+P +F   I  L
Sbjct: 11 QPWEKRFPDDFYEEIFRL 28


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 614,273
Number of extensions: 19623
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (22.9 bits)