Query gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 155
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 33803
Date Wed Jun 1 22:24:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781152.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3go5_A Multidomain protein wi 95.3 0.032 9.6E-07 33.7 5.0 47 4-50 14-64 (66)
2 >3e97_A Transcriptional regula 85.7 1.6 4.8E-05 23.8 4.9 53 7-59 51-103 (112)
3 >1lva_A Selenocysteine-specifi 80.6 1.7 5.1E-05 23.7 3.3 49 2-50 15-64 (66)
4 >2gau_A Transcriptional regula 80.1 4.3 0.00013 21.4 5.3 47 10-56 27-73 (81)
5 >3d0s_A Transcriptional regula 78.7 4.2 0.00012 21.4 4.9 47 10-56 28-74 (80)
6 >2v79_A DNA replication protei 78.5 2.4 7.2E-05 22.8 3.6 41 4-44 28-68 (120)
7 >3iwz_A CAP-like, catabolite a 78.3 4.3 0.00013 21.4 4.8 43 10-52 27-69 (72)
8 >2zdb_A Transcriptional regula 77.8 3 8.9E-05 22.3 3.9 47 10-56 27-73 (85)
9 >2oz6_A Virulence factor regul 72.3 7.5 0.00022 20.0 4.8 42 10-51 27-68 (72)
10 >1hw1_A FADR, fatty acid metab 68.6 9.7 0.00029 19.3 5.5 43 5-48 25-67 (77)
11 >3kcc_A Catabolite gene activa 68.5 9.6 0.00028 19.4 4.6 44 10-53 27-70 (72)
12 >2zcw_A TTHA1359, transcriptio 67.9 9.2 0.00027 19.5 4.4 47 10-56 27-73 (85)
13 >3e6c_C CPRK, cyclic nucleotid 64.5 12 0.00035 18.9 4.7 48 10-57 28-75 (103)
14 >3f8m_A GNTR-family protein tr 64.3 12 0.00035 18.8 5.9 45 5-50 30-74 (77)
15 >1ft9_A Carbon monoxide oxidat 61.1 12 0.00036 18.8 4.0 47 10-56 29-76 (90)
16 >2di3_A Bacterial regulatory p 59.9 14 0.00042 18.4 4.6 41 5-46 22-62 (78)
17 >3bwg_A Uncharacterized HTH-ty 57.8 15 0.00046 18.2 5.6 43 4-47 22-64 (82)
18 >3e1s_A Exodeoxyribonuclease V 54.4 13 0.00039 18.6 3.2 44 10-53 95-138 (149)
19 >1i7f_A Heat shock protein 33; 52.9 1.3 3.7E-05 24.5 -2.1 39 3-41 33-71 (114)
20 >1r7j_A Conserved hypothetical 52.5 19 0.00056 17.6 7.0 50 12-61 20-70 (95)
21 >3c7j_A Transcriptional regula 50.1 21 0.00061 17.4 5.4 36 13-48 50-85 (91)
22 >2fmy_A COOA, carbon monoxide 49.5 21 0.00063 17.4 4.6 46 10-55 29-75 (84)
23 >1zyb_A Transcription regulato 48.8 22 0.00064 17.3 4.3 46 8-53 141-186 (191)
24 >3dv8_A Transcriptional regula 48.8 22 0.00064 17.3 4.8 49 8-56 19-67 (74)
25 >1hw7_A Heat shock protein HSP 46.0 2 6E-05 23.3 -2.0 36 4-39 34-69 (75)
26 >2r3s_A Uncharacterized protei 41.3 29 0.00084 16.6 5.9 48 12-59 23-70 (79)
27 >2hs5_A Putative transcription 36.5 34 0.001 16.2 5.4 35 13-47 52-86 (94)
28 >3edp_A LIN2111 protein; APC88 35.7 35 0.001 16.1 5.0 34 14-47 35-68 (76)
29 >2pi2_A Replication protein A 33.6 10 0.0003 19.2 0.0 29 16-44 229-257 (270)
30 >2bgc_A PRFA; bacterial infect 33.2 39 0.0011 15.8 6.9 61 10-71 61-122 (132)
31 >1sfu_A 34L protein; protein/Z 32.4 40 0.0012 15.8 4.0 41 14-54 31-73 (75)
32 >1bia_A BIRA bifunctional prot 31.7 41 0.0012 15.7 3.6 35 14-48 21-56 (64)
33 >3cf4_G Acetyl-COA decarbonyla 29.2 45 0.0013 15.4 4.6 39 28-66 23-62 (170)
34 >1j5y_A Transcriptional regula 28.8 46 0.0014 15.4 4.2 41 6-48 32-73 (79)
35 >3lmm_A Uncharacterized protei 28.1 14 0.00042 18.4 0.0 29 14-42 37-65 (174)
36 >1v4r_A Transcriptional repres 27.1 29 0.00085 16.6 1.4 42 5-47 29-70 (102)
37 >2h3o_A MERF; membrane protein 27.0 17 0.0005 18.0 0.2 19 125-143 5-23 (61)
38 >2g7u_A Transcriptional regula 26.0 52 0.0015 15.1 6.1 41 10-50 27-67 (75)
39 >3eet_A Putative GNTR-family t 25.7 52 0.0016 15.1 5.5 39 7-46 49-87 (96)
40 >2k9m_A RNA polymerase sigma f 25.4 53 0.0016 15.0 3.8 39 2-40 29-67 (72)
41 >2vn2_A DNAD, chromosome repli 25.3 53 0.0016 15.0 3.8 35 5-40 31-65 (65)
42 >2c31_A Oxalyl-COA decarboxyla 24.9 54 0.0016 15.0 2.7 42 24-65 5-47 (179)
43 >2wv0_A YVOA, HTH-type transcr 24.9 54 0.0016 15.0 5.3 40 6-46 29-68 (82)
44 >2htj_A P fimbrial regulatory 24.2 56 0.0017 14.9 4.4 33 14-46 16-48 (81)
45 >2e1c_A Putative HTH-type tran 24.1 56 0.0017 14.9 2.6 40 2-43 33-72 (77)
46 >3ic7_A Putative transcription 22.7 22 0.00065 17.3 0.1 33 14-46 8-40 (49)
47 >1u5t_A Appears to BE function 22.2 61 0.0018 14.7 2.7 31 15-45 21-51 (70)
48 >3ihu_A Transcriptional regula 22.1 62 0.0018 14.7 4.9 36 12-47 39-74 (82)
49 >2v9v_A Selenocysteine-specifi 21.6 63 0.0019 14.6 4.8 46 5-50 18-67 (75)
50 >2ia2_A Putative transcription 21.1 65 0.0019 14.5 5.3 43 8-50 32-74 (86)
51 >3fx3_A Cyclic nucleotide-bind 21.0 65 0.0019 14.5 3.7 35 10-44 25-59 (86)
No 1
>>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} (A:220-285)
Probab=95.30 E-value=0.032 Score=33.74 Aligned_cols=47 Identities=26% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 000489875027----99977719999999999999985391899389242
Q gi|254781152|r 4 LYDRGGSIPDND----KYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 4 MYdrGgPL~~N~----r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
|=++||-+|.++ +.+..+.|+|++.|-+|+-.|++.++|.+.+++++
T Consensus 14 L~~~gG~lpl~DKS~pe~I~~~fg~SKkaFKrAiG~L~K~~~I~i~~~gI~ 64 (66)
T 3go5_A 14 LESNGGFXTLNDKSSPDDIKATFGISKGQFKKALGGLXKAGKIKQDQFGTE 64 (66)
T ss_dssp HHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEETTEEE
T ss_pred HHHCCCEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCEEE
T ss_conf 997699213799999999999979079999999888865877999389799
No 2
>>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} (A:120-231)
Probab=85.67 E-value=1.6 Score=23.84 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHHHHH
Q ss_conf 48987502799977719999999999999985391899389242189999999
Q gi|254781152|r 7 RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEII 59 (155)
Q Consensus 7 rGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEeEL~ 59 (155)
.+-+++..-+-||..||.|..+.-.++..|.+.|.|....|.++=.+.+.=..
T Consensus 51 ~~~~i~lt~~~lA~~~g~sr~tvsr~l~~L~~~G~I~~~~~~i~i~d~~~L~~ 103 (112)
T 3e97_A 51 QPEVLPLGTQDIXARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDLAALEA 103 (112)
T ss_dssp STTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCHHHHHH
T ss_pred CCEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHH
T ss_conf 76021557999999969999999999999997898997299999898999999
No 3
>>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:133-198)
Probab=80.55 E-value=1.7 Score=23.72 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCCEE
Q ss_conf 210004898750279997771999999999999998539189-9389242
Q gi|254781152|r 2 ISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIF-IQEGNIY 50 (155)
Q Consensus 2 v~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~-l~DG~LW 50 (155)
...|..+|=-|-..+-++..+|++.+..+.++.+|.+.|.|. +.+...|
T Consensus 15 ~~~~~~ag~~PP~vrdl~~~l~~~e~~~r~ll~~l~~~G~lvkI~~D~y~ 64 (66)
T 1lva_A 15 EDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 64 (66)
T ss_dssp HHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEE
T ss_conf 99998679999889999988397999999999999977986882798899
No 4
>>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} (A:152-232)
Probab=80.14 E-value=4.3 Score=21.40 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 87502799977719999999999999985391899389242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
+++..-+.||..+|.|-.++-.++..|.+.|-|...++.++=.+.+.
T Consensus 27 ~~~lt~~~lA~~lG~sr~tvsr~L~~l~~~g~I~~~~~~i~I~d~~~ 73 (81)
T 2gau_A 27 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDR 73 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred ECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH
T ss_conf 62878999998979999999999999998896997099999847999
No 5
>>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* (A:148-227)
Probab=78.67 E-value=4.2 Score=21.44 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 87502799977719999999999999985391899389242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
|++..-+-||.++|+|-.+.-.++.-|.+.|-|....|.+.-.+.+.
T Consensus 28 ~~~~t~~~la~~lg~sr~tvsr~L~~l~~~glI~~~~~~i~I~d~~~ 74 (80)
T 3d0s_A 28 THDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSER 74 (80)
T ss_dssp ECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH
T ss_conf 54789999999979999999999999998898996399999888999
No 6
>>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135)
Probab=78.53 E-value=2.4 Score=22.83 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=34.5
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 00048987502799977719999999999999985391899
Q gi|254781152|r 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI 44 (155)
Q Consensus 4 MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l 44 (155)
.|...|...-..+.||..+|+|.++...++..|++.|-|..
T Consensus 28 ~~~~~g~~~pS~~~iA~~~g~s~~tV~~~l~~L~~~Gli~~ 68 (120)
T 2v79_A 28 MHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 68 (120)
T ss_dssp HHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99876999989999999969899999999999998899799
No 7
>>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} (A:159-230)
Probab=78.27 E-value=4.3 Score=21.38 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECH
Q ss_conf 8750279997771999999999999998539189938924218
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNV 52 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~ 52 (155)
++|.+-+-||..+|+|--+.-.++.-|.+.|-|....|.++-.
T Consensus 27 ~~~~t~~~lA~~lG~sr~tvsr~l~~l~~~gli~~~~~~i~I~ 69 (72)
T 3iwz_A 27 QLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLY 69 (72)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEEE
T ss_conf 5177999999897988999999999999789899649999998
No 8
>>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus} (A:111-195)
Probab=77.84 E-value=3 Score=22.30 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 87502799977719999999999999985391899389242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
+++.+-+-||.++|+|-.+.-.++..|.+.|-|....+.++-.+.+.
T Consensus 27 ~~~~t~~~lA~~~g~sr~tvsr~L~~l~~~giI~~~~~~i~I~d~~~ 73 (85)
T 2zdb_A 27 YVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLAA 73 (85)
T ss_dssp EEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHHH
T ss_pred ECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEECCHHH
T ss_conf 23888999998879979999999999998898997099999878999
No 9
>>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} (A:136-207)
Probab=72.29 E-value=7.5 Score=19.99 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEC
Q ss_conf 875027999777199999999999999853918993892421
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYN 51 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN 51 (155)
+++..-+-||..+|+|--+.-.++.-|.+.|-|....|.++-
T Consensus 27 ~~~~t~~elA~~lg~sr~tvsr~l~~l~~~gli~~~~~~i~I 68 (72)
T 2oz6_A 27 QIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVV 68 (72)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 707789999999799999999999999988989976999999
No 10
>>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77)
Probab=68.56 E-value=9.7 Score=19.33 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=34.8
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 00489875027999777199999999999999853918993892
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGN 48 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~ 48 (155)
|.-|.+|| +++.||...|.|--..+.|+..|.+.|-|....|+
T Consensus 25 ~~~G~~lp-s~~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~ 67 (77)
T 1hw1_A 25 FPPGTILP-AERELSELIGVTRTTLREVLQRLARDGWLTIQHGK 67 (77)
T ss_dssp SCTTSBCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 99819890-69999999792999999999999986881542588
No 11
>>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ... (A:189-260)
Probab=68.49 E-value=9.6 Score=19.37 Aligned_cols=44 Identities=25% Similarity=0.230 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHH
Q ss_conf 87502799977719999999999999985391899389242189
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~R 53 (155)
+++..-+-||.++|.|--+.-.++.-|.+.|-|....+.++=.+
T Consensus 27 ~~~lt~~~lA~~lg~sr~tvsr~l~~l~~~GlI~~~~~~i~I~D 70 (72)
T 3kcc_A 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG 70 (72)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEEC-
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEEEE
T ss_conf 83689999999979989999999999996897997699999973
No 12
>>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} (A:118-202)
Probab=67.92 E-value=9.2 Score=19.47 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 87502799977719999999999999985391899389242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
++|.+-+.||..+|+|--+.-.++.-|.+.|.|....+.+-=.+.+.
T Consensus 27 ~~~lt~~~lA~~lg~sr~tvsr~L~~L~~~glI~~~~~~i~I~d~~~ 73 (85)
T 2zcw_A 27 VLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKG 73 (85)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred ECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH
T ss_conf 43898999998879889999999999998899996599999888999
No 13
>>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} (C:148-250)
Probab=64.50 E-value=12 Score=18.86 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHHH
Q ss_conf 875027999777199999999999999853918993892421899999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEeE 57 (155)
|++..-+.||.++|+|-.+--.++..|.+.|-|....+.+.=.+.+.=
T Consensus 28 ~~~lt~~~LA~~lG~sr~tvsr~l~~L~~~giI~~~~~~i~I~d~~~L 75 (103)
T 3e6c_C 28 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGEL 75 (103)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHH
T ss_conf 788689999989799899999999999988989964999998689999
No 14
>>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77)
Probab=64.25 E-value=12 Score=18.83 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=36.3
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 0048987502799977719999999999999985391899389242
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
|.-|.+|| +++-||...|+|.-+.+.++..|.+.|-|.--.-+-|
T Consensus 30 ~~~G~~lP-ser~La~~~~VSr~tvr~Al~~L~~~Gli~~~g~G~~ 74 (77)
T 3f8m_A 30 MRIGDPFP-AEREIAEQFEVARETVRQALRELLIDGRVERRGRTTV 74 (77)
T ss_dssp CCTTCBCC-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCEEE
T ss_conf 99978684-6999999979699999999999997077620485169
No 15
>>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} (A:133-222)
Probab=61.06 E-value=12 Score=18.78 Aligned_cols=47 Identities=21% Similarity=0.056 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCCEECHHHHH
Q ss_conf 875027999777199999999999999853918993-89242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQ-EGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~-DG~LWN~RVEe 56 (155)
|++..-+-||..+|+|--+--.++..|.+.|-|... .|.++-.+++.
T Consensus 29 ~~~lt~~~lA~~lg~sr~tvsr~l~~l~~~g~I~~~~r~~i~I~d~~~ 76 (90)
T 1ft9_A 29 SVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNLVR 76 (90)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSHHH
T ss_pred ECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCHHH
T ss_conf 542889999998499899999999999988989987998599889999
No 16
>>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78)
Probab=59.89 E-value=14 Score=18.37 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=33.9
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 004898750279997771999999999999998539189938
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
|..|..|| .++-||...|+|.-+-+.+++.|.+.|-|....
T Consensus 22 ~~~G~~LP-se~~La~~~~vSr~tvr~al~~L~~~G~i~~~~ 62 (78)
T 2di3_A 22 LKIGDHLP-SERALSETLGVSRSSLREALRVLEALGTISTAT 62 (78)
T ss_dssp SCTTCBCC-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCS
T ss_pred CCCCCCCH-HHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEC
T ss_conf 99819991-099999998959999999999988608034167
No 17
>>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82)
Probab=57.84 E-value=15 Score=18.16 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 00048987502799977719999999999999985391899389
Q gi|254781152|r 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 4 MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
.|..|.+|| .++-||...|+|.-+-+.|+..|...|-|...-|
T Consensus 22 ~~~~G~~LP-s~~~la~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 64 (82)
T 3bwg_A 22 QLQQGDKLP-VLETLXAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (82)
T ss_dssp TCCTTCBCC-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999929990-6999999989399999999999998612151488
No 18
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:1-149)
Probab=54.35 E-value=13 Score=18.57 Aligned_cols=44 Identities=5% Similarity=0.038 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHH
Q ss_conf 87502799977719999999999999985391899389242189
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~R 53 (155)
|...=.+..+.+++++......+++.+++.|+++..++++|-.+
T Consensus 95 ~~~~L~~~~~~lL~~~~~~i~~~l~~l~~~~~iv~~~~~iyl~~ 138 (149)
T 3e1s_A 95 PRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAAE 138 (149)
T ss_dssp EHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTSSEEECCCCSCC-
T ss_pred EHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 49999999999867996789999999988524665420000122
No 19
>>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone; 2.70A {Escherichia coli} (A:179-292)
Probab=52.92 E-value=1.3 Score=24.49 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=30.6
Q ss_pred CHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 100048987502799977719999999999999985391
Q gi|254781152|r 3 SLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNK 41 (155)
Q Consensus 3 ~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GK 41 (155)
.+|+..++-....+.+...|+||..++.++|..|-+..-
T Consensus 33 ~lf~~~~~~il~~~~v~f~C~CS~er~~~~L~~L~~~El 71 (114)
T 1i7f_A 33 RLYHEEEVTVYDPQDVEFKCTCSRERSADALKTLPDEEV 71 (114)
T ss_dssp HHHTTSCCCCCCCCCCCCCCC------------------
T ss_pred HHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCHHHH
T ss_conf 750558847844634687899998999999983699999
No 20
>>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} (A:)
Probab=52.51 E-value=19 Score=17.64 Aligned_cols=50 Identities=10% Similarity=-0.079 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCE-ECHHHHHHHHHH
Q ss_conf 50279997771999999999999998539189938924-218999999975
Q gi|254781152|r 12 PDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNI-YNVRVEKEIIKA 61 (155)
Q Consensus 12 ~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~L-WN~RVEeEL~n~ 61 (155)
|-..+.|+..||.|-+.|+..++.|.+.|-|...+++. -...=++-|..+
T Consensus 20 ~i~rt~L~~~~nLs~~~~~~~l~~L~~~GLI~~~~~~y~lT~kG~~~l~~l 70 (95)
T 1r7j_A 20 GSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLEDI 70 (95)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHH
T ss_conf 998648899809999999999999998889252698479875189999999
No 21
>>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91)
Probab=50.05 E-value=21 Score=17.41 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=31.8
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 027999777199999999999999853918993892
Q gi|254781152|r 13 DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGN 48 (155)
Q Consensus 13 ~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~ 48 (155)
..++.||...|+|.-..+.|+..|...|-|....|+
T Consensus 50 l~e~~La~~~gvSr~tvr~Al~~L~~~Glv~~~~~~ 85 (91)
T 3c7j_A 50 LRQQELATLFGVSRXPVREALRQLEAQSLLRVETHK 85 (91)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 389999999886954999999999996423112333
No 22
>>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* (A:137-220)
Probab=49.48 E-value=21 Score=17.36 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCCEECHHHH
Q ss_conf 875027999777199999999999999853918993-8924218999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQ-EGNIYNVRVE 55 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~-DG~LWN~RVE 55 (155)
|++.+-+-||...|+|-.+.-.++..|.+.|-|... .+.++=.+.+
T Consensus 29 ~~~~t~~eLA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~~i~I~d~~ 75 (84)
T 2fmy_A 29 ELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQ 75 (84)
T ss_dssp ECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESCHH
T ss_pred ECCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCHH
T ss_conf 02316999999979989999999999998899997699979988999
No 23
>>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} (A:42-232)
Probab=48.79 E-value=22 Score=17.29 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHH
Q ss_conf 8987502799977719999999999999985391899389242189
Q gi|254781152|r 8 GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53 (155)
Q Consensus 8 GgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~R 53 (155)
..+++...+.+|..+|+|..+...++..|.+.|.|...++.++-.+
T Consensus 141 ~~~~~~~~~~la~~l~~sr~~v~r~l~~L~~~g~i~~~~~~i~i~d 186 (191)
T 1zyb_A 141 EKTFKVKXDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPD 186 (191)
T ss_dssp CEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEESC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECC
T ss_conf 5557769999998979899999999999998898997299999867
No 24
>>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:147-220)
Probab=48.76 E-value=22 Score=17.29 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 8987502799977719999999999999985391899389242189999
Q gi|254781152|r 8 GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 8 GgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
.-.++..-+-||...|+|-.+.-.++..|.+.|-|...++.+-=.+.+.
T Consensus 19 ~~~i~~t~~~lA~~lg~sr~tvsr~L~~l~~~g~I~~~~~~i~I~d~~~ 67 (74)
T 3dv8_A 19 TNELKITHETIANHLGSHREVITRXLRYFQVEGLVKLSRGKITILDSKR 67 (74)
T ss_dssp SSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH
T ss_conf 8766644999999979899999999999998898996299999889999
No 25
>>1hw7_A Heat shock protein HSP33; dimerization, oxidative stress, chaperone; HET: MES; 2.20A {Escherichia coli} (A:181-255)
Probab=46.02 E-value=2 Score=23.31 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 000489875027999777199999999999999853
Q gi|254781152|r 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKF 39 (155)
Q Consensus 4 MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~ 39 (155)
+|..-++-....+-++..|.||..||.+++-.|=+.
T Consensus 34 lf~~~~~~il~~~~~~f~C~CSrer~~~~L~sLg~~ 69 (75)
T 1hw7_A 34 LYHEEEVTVYDPQDVEFKCTCSRERCADALKTLPDE 69 (75)
T ss_dssp HHTTSCCCCCCCCCCCCCCCC---------------
T ss_pred HHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCHH
T ss_conf 728688558656437858999999999999839999
No 26
>>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} (A:17-95)
Probab=41.34 E-value=29 Score=16.61 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHHHHH
Q ss_conf 502799977719999999999999985391899389242189999999
Q gi|254781152|r 12 PDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEII 59 (155)
Q Consensus 12 ~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEeEL~ 59 (155)
|.+.+-||..||++-+..+.++.+|...|-+...+|+.-|.+.-+.+-
T Consensus 23 p~t~~~La~~~g~~~~~~~~lLr~L~~~g~~~~~~~~y~~t~~s~~~l 70 (79)
T 2r3s_A 23 IESSQSLAQKCQTSERGXRXLCDYLVIIGFXTKQAEGYRLTSDSAXFL 70 (79)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHT
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHC
T ss_conf 999999998729898999999999997791484188764598788434
No 27
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=36.52 E-value=34 Score=16.16 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=31.4
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 02799977719999999999999985391899389
Q gi|254781152|r 13 DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 13 ~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
..++-||...|+|.-..|.++..|...|-|....|
T Consensus 52 l~e~~La~~~~vSr~tvR~al~~L~~~Gli~~~~~ 86 (94)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (94)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999979599999999999998878631226
No 28
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=35.66 E-value=35 Score=16.07 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 2799977719999999999999985391899389
Q gi|254781152|r 14 NDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 14 N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
.++.||...|+|.-.-+.++..|.+.|-|....|
T Consensus 35 se~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~ 68 (76)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCC
T ss_conf 8999999979499999999999997416130688
No 29
>>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} (A:)
Probab=33.65 E-value=10 Score=19.23 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=20.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99977719999999999999985391899
Q gi|254781152|r 16 KYIAGVCGCSIRRWRNIRAILEKFNKIFI 44 (155)
Q Consensus 16 r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l 44 (155)
+.++.+.+++...++.+++.|.+.|+|+-
T Consensus 229 ~I~~~l~~~~~~~i~~al~~L~~~G~IY~ 257 (270)
T 2pi2_A 229 DLKNQLKHMSVSSIKQAVDFLSNEGHIYS 257 (270)
T ss_dssp -----------------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 99998349999999999999975988981
No 30
>>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} (A:107-238)
Probab=33.17 E-value=39 Score=15.84 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEECCCEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 875027999777199999-99999999985391899389242189999999756778874220
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIR-RWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRK 71 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvK-kFr~aLd~Ll~~GKI~l~DG~LWN~RVEeEL~n~sEer~~agRk 71 (155)
+++..-+-||..||.|.+ +.-.++.-|.+.|.|....+.+-=.+.+. |....+...+-++.
T Consensus 61 ~i~lt~~elA~~~G~s~retvsr~l~~l~~~G~I~~~~~~i~I~d~~~-L~~~~~~~~~~~~~ 122 (132)
T 2bgc_A 61 LDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDY-LKRYAPKLDEWFYL 122 (132)
T ss_dssp CSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH-HHHHCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH-HHHHHHHCCHHHHC
T ss_conf 357679999999589827799999999998898996399999968999-99986525033322
No 31
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=32.37 E-value=40 Score=15.76 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EECHHH
Q ss_conf 27999777199999999999999853918993892--421899
Q gi|254781152|r 14 NDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGN--IYNVRV 54 (155)
Q Consensus 14 N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~--LWN~RV 54 (155)
.-..||+-.|-++|.--.+|=-|.+.|++.-.+|. +|..-|
T Consensus 31 tA~~lAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~~PP~W~l~~ 73 (75)
T 1sfu_A 31 TAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWFKNY 73 (75)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEEECT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCC
T ss_conf 1999998863008788899999986896544249993676507
No 32
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=31.71 E-value=41 Score=15.69 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCC
Q ss_conf 279997771999999999999998539189-93892
Q gi|254781152|r 14 NDKYIAGVCGCSIRRWRNIRAILEKFNKIF-IQEGN 48 (155)
Q Consensus 14 N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~-l~DG~ 48 (155)
+.+-||..+|.|.++-++-++.|.+.|.++ ..+|.
T Consensus 21 s~~ela~~l~vS~~Ti~rdi~~L~~~G~~i~~~~g~ 56 (64)
T 1bia_A 21 SGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGK 56 (64)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 899999997989999999999999769619996897
No 33
>>3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} (G:)
Probab=29.22 E-value=45 Score=15.44 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHHH
Q ss_conf 99999999985391-8993892421899999997567788
Q gi|254781152|r 28 RWRNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEERQ 66 (155)
Q Consensus 28 kFr~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer~ 66 (155)
.-.++++.|.+..+ +++.+++.|+.+..+++.++.|+..
T Consensus 23 ~i~~~~~~L~~AkrPvii~G~~~~~~~~~~~l~~lae~~g 62 (170)
T 3cf4_G 23 SPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAAN 62 (170)
T ss_dssp CHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999669988996888643268999999999849
No 34
>>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79)
Probab=28.81 E-value=46 Score=15.40 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=32.0
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEEECCC
Q ss_conf 048987502799977719999999999999985391-8993892
Q gi|254781152|r 6 DRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNK-IFIQEGN 48 (155)
Q Consensus 6 drGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GK-I~l~DG~ 48 (155)
...+|+ ..+-||..+|.|.++-+.-++.|.+.|. |.-..|+
T Consensus 32 ~~~~~v--t~~eLa~~l~VS~~Ti~rdl~~L~~~G~~i~~~~gG 73 (79)
T 1j5y_A 32 RSKEPV--SGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRG 73 (79)
T ss_dssp HCSSCB--CHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTE
T ss_pred HCCCCC--CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 869977--699999997979999999999999779978973798
No 35
>>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583)
Probab=28.11 E-value=14 Score=18.35 Aligned_cols=29 Identities=10% Similarity=-0.105 Sum_probs=20.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Q ss_conf 27999777199999999999999853918
Q gi|254781152|r 14 NDKYIAGVCGCSIRRWRNIRAILEKFNKI 42 (155)
Q Consensus 14 N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI 42 (155)
....++..++.+..+-+..+..|.+.+-+
T Consensus 37 ~~~~i~~~l~~~~~~~r~~~~~l~~~~~~ 65 (174)
T 3lmm_A 37 TIDVVARGLQSGKEAARNALEAARQTTVA 65 (174)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHTCEET
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 79999988589999999999999977982
No 36
>>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:)
Probab=27.10 E-value=29 Score=16.58 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=34.0
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 0048987502799977719999999999999985391899389
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
|.-|.+|| ..+-||...|+|.-+-|.|+..|.+.|-|....|
T Consensus 29 l~~G~~LP-s~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~ 70 (102)
T 1v4r_A 29 LAPGDTLP-SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp CCTTSBCC-CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred CCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99969986-8999999979799999999999998896799748
No 37
>>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} (A:)
Probab=26.96 E-value=17 Score=17.96 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8898776556787664100
Q gi|254781152|r 125 LVIALCCATDVLIHHYGIV 143 (155)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (155)
.+.||||.|.+|.--.|.|
T Consensus 5 vi~ALCCFTPvLViL~g~v 23 (61)
T 2h3o_A 5 TLVALSSFTPVLVILLGVV 23 (61)
T ss_dssp -----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999319999999984
No 38
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=26.03 E-value=52 Score=15.10 Aligned_cols=41 Identities=20% Similarity=0.048 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 87502799977719999999999999985391899389242
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
+-+....-||..+|.+.-+-..++..|.+.|-+..++|+-+
T Consensus 27 ~~~~t~~eia~~~glp~stv~Rll~tL~~~g~l~~~~g~Y~ 67 (75)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWS 67 (75)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEE
T ss_conf 99989999999979199999999999997996994287434
No 39
>>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96)
Probab=25.72 E-value=52 Score=15.07 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=32.0
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 4898750279997771999999999999998539189938
Q gi|254781152|r 7 RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 7 rGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
-|..|| .++-||...|+|.-..+.++..|...|-|....
T Consensus 49 pG~~LP-s~~~La~~~gvsr~tvr~Al~~L~~~Gli~~~~ 87 (96)
T 3eet_A 49 PHTRLP-SQARIREEYGVSDTVALEARKVLXAEGLVEGRS 87 (96)
T ss_dssp TTSBCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECC
T ss_conf 939991-799999998959999999999999836606158
No 40
>>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus} (A:1-72)
Probab=25.39 E-value=53 Score=15.03 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 210004898750279997771999999999999998539
Q gi|254781152|r 2 ISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFN 40 (155)
Q Consensus 2 v~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~G 40 (155)
|.-.|..|=+..+..-+|-.+|||......+++.+++..
T Consensus 29 I~~LD~~GyL~~~~~eia~~l~~~~~~ve~~l~~iq~le 67 (72)
T 2k9m_A 29 LNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLRLE 67 (72)
T ss_dssp TTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHHTSS
T ss_pred HHCCCCCCEECCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 970898982567889999884788878999999997679
No 41
>>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} (A:15-79)
Probab=25.32 E-value=53 Score=15.02 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=28.7
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 004898750279997771999999999999998539
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFN 40 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~G 40 (155)
-++|.+-| +.+.||.+.|.|.+.-...+.-|++.|
T Consensus 31 ~~~g~~fP-s~~~La~~m~~s~~~i~~~l~~Li~kG 65 (65)
T 2vn2_A 31 FEEGVLFP-TPAELAERMTVSAAECMEMVRRLLQKG 65 (65)
T ss_dssp HTTTCSSC-CHHHHHHTSSSCHHHHHHHHHHHHHTT
T ss_pred HHCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 87699999-999999896979999999999999889
No 42
>>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:194-372)
Probab=24.94 E-value=54 Score=14.98 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHCCCE-EEECCCEECHHHHHHHHHHHHHH
Q ss_conf 9999999999999853918-99389242189999999756778
Q gi|254781152|r 24 CSIRRWRNIRAILEKFNKI-FIQEGNIYNVRVEKEIIKASEER 65 (155)
Q Consensus 24 CSvKkFr~aLd~Ll~~GKI-~l~DG~LWN~RVEeEL~n~sEer 65 (155)
.+....+.+.+.|.+.-+. ++.+++.++.+..+++..+.|+-
T Consensus 5 p~~~~i~~~~~~L~~A~rPvIi~G~~~~~~~a~~~l~~lae~~ 47 (179)
T 2c31_A 5 PAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEET 47 (179)
T ss_dssp CCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9999999999998616895899962311344789998878741
No 43
>>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82)
Probab=24.91 E-value=54 Score=14.98 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 04898750279997771999999999999998539189938
Q gi|254781152|r 6 DRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 6 drGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
.-|..|| +++-||...|+|.-+.+.|+..|...|-|....
T Consensus 29 ~~G~~LP-s~~~La~~~~vSr~tvr~Al~~L~~~gli~~~~ 68 (82)
T 2wv0_A 29 QPDMPLP-SEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (82)
T ss_dssp CTTCBCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9939993-699999997969999999999999779889988
No 44
>>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} (A:)
Probab=24.17 E-value=56 Score=14.89 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 279997771999999999999998539189938
Q gi|254781152|r 14 NDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 14 N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
.-|-+|-.|+.|+=+.|-.|--|.+.|+|...-
T Consensus 16 ~TRdIAd~~~lSIYqAR~yLlkLekeG~V~~~p 48 (81)
T 2htj_A 16 KTAEIAEALAVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 288999996528999999999986706701584
No 45
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77)
Probab=24.13 E-value=56 Score=14.89 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 210004898750279997771999999999999998539189
Q gi|254781152|r 2 ISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIF 43 (155)
Q Consensus 2 v~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~ 43 (155)
+.++.+.++++ ..-||..+|.|..+.+.-++-|.+.|-|.
T Consensus 33 l~~Lq~d~r~s--~~ela~~lgis~~tv~~ri~rL~~~gvI~ 72 (77)
T 2e1c_A 33 IKILQNDGKAP--LREISKITGLAESTIHERIRKLRESGVIK 72 (77)
T ss_dssp HHHHHHCTTCC--HHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHCCCCE
T ss_conf 99999838989--99999998819899999999985245503
No 46
>>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} (A:30-78)
Probab=22.72 E-value=22 Score=17.25 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 279997771999999999999998539189938
Q gi|254781152|r 14 NDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 14 N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
..+-||...|+|.-+-+.|++.|.+.|-|.-.-
T Consensus 8 s~r~la~~~~vsr~Tv~~a~~~L~~~G~i~~~~ 40 (49)
T 3ic7_A 8 SVREYASIVEVNANTVXRSYEYLQSQEVIYNKR 40 (49)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEET
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 899999875939999999999999889679963
No 47
>>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} (A:164-233)
Probab=22.25 E-value=61 Score=14.67 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=26.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 7999777199999999999999853918993
Q gi|254781152|r 15 DKYIAGVCGCSIRRWRNIRAILEKFNKIFIQ 45 (155)
Q Consensus 15 ~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~ 45 (155)
..-|...+|.+..|++.+++.|++.|-.-+.
T Consensus 21 ~s~L~~~l~W~~~Ra~~aLe~li~eGl~WvD 51 (70)
T 1u5t_A 21 ISLLKANLGWEAVRSKSALDEMVANGLLWID 51 (70)
T ss_dssp HHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999988796999999999999977998997
No 48
>>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82)
Probab=22.10 E-value=62 Score=14.65 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 502799977719999999999999985391899389
Q gi|254781152|r 12 PDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 12 ~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
...++-||...|+|.-..|.|+..|...|-|....|
T Consensus 39 ~l~e~~La~~~~vSr~~vr~Al~~L~~~Gli~~~~~ 74 (82)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (82)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 669999999989888999999999997898476358
No 49
>>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} (A:61-135)
Probab=21.64 E-value=63 Score=14.60 Aligned_cols=46 Identities=2% Similarity=0.067 Sum_probs=33.1
Q ss_pred HCCCCCCCC--HHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 004898750--279997771--9999999999999985391899389242
Q gi|254781152|r 5 YDRGGSIPD--NDKYIAGVC--GCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 5 YdrGgPL~~--N~r~LAg~C--GCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
|++.-|+.. .-..|-... +-+.+-|..+++.|++.|.|...++-+-
T Consensus 18 fH~~~Pl~~G~~keeLr~~~~~~~~~~~f~~lL~~l~~~g~i~~~~~~v~ 67 (75)
T 2v9v_A 18 FHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVA 67 (75)
T ss_dssp HHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred HHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 99979500098999999885123899999999999997899687589988
No 50
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=21.08 E-value=65 Score=14.53 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 8987502799977719999999999999985391899389242
Q gi|254781152|r 8 GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 8 GgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
..+-+....-||..+|.+.-+.-.+|..|++.|-+...+|+.+
T Consensus 32 ~~~~~~tl~eia~~lg~~~st~~RlL~tL~~~g~v~~~~~~y~ 74 (86)
T 2ia2_A 32 HRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFW 74 (86)
T ss_dssp SSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSSEEE
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 3799969999999979399999999999997799665597035
No 51
>>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* (A:152-237)
Probab=21.05 E-value=65 Score=14.52 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 87502799977719999999999999985391899
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI 44 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l 44 (155)
+++..-+-||..+|+|..+.-.++..|.+.|-|..
T Consensus 25 ~~~~s~~~lA~~lG~sr~tvsr~l~~l~~~gli~~ 59 (86)
T 3fx3_A 25 TLPYDKXLIAGRLGXKPESLSRAFSRLKAAGVTVK 59 (86)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 78989999998979989999999999997897997
Done!