Query gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 155
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 13730
Date Wed Jun 1 11:40:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781152.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hw1a1 a.4.5.6 (A:5-78) Fatty 82.0 1.6 0.00012 21.6 5.6 42 5-47 21-62 (74)
2 d1lvaa3 a.4.5.35 (A:511-574) C 80.8 0.81 5.9E-05 23.3 3.8 48 2-49 13-61 (64)
3 d1dpua_ a.4.5.16 (A:) C-termin 76.0 1.5 0.00011 21.7 4.0 32 13-44 24-56 (69)
4 d2hs5a1 a.4.5.6 (A:25-93) Puta 75.4 2.7 0.0002 20.3 5.1 42 4-47 19-60 (69)
5 d3bwga1 a.4.5.6 (A:5-82) Trans 72.1 3.3 0.00024 19.8 5.7 42 5-47 16-57 (78)
6 d3e5ua1 a.4.5.4 (A:148-227) Ch 61.6 5 0.00036 18.7 4.1 46 10-55 28-73 (80)
7 d2zcwa1 a.4.5.4 (A:118-199) Tr 61.2 5.5 0.0004 18.5 4.5 47 10-56 27-73 (82)
8 d1i5za1 a.4.5.4 (A:138-206) Ca 59.0 6 0.00044 18.3 4.8 41 10-50 27-67 (69)
9 d1v4ra1 a.4.5.6 (A:1-100) Tran 56.3 2.1 0.00015 21.0 1.4 42 5-47 27-68 (100)
10 d1ozha1 c.31.1.3 (A:188-366) C 50.5 7.1 0.00052 17.8 3.4 39 27-65 8-47 (179)
11 d2gaua1 a.4.5.4 (A:152-232) Tr 50.0 8.4 0.00062 17.4 6.1 47 10-56 27-73 (81)
12 d1biaa1 a.4.5.1 (A:1-63) Bioti 44.8 10 0.00074 16.9 3.5 39 4-44 13-51 (63)
13 d1zyba1 a.4.5.4 (A:148-220) Pr 44.5 10 0.00075 16.9 4.6 44 11-54 26-69 (73)
14 d2d1ha1 a.4.5.50 (A:1-109) Hyp 43.4 9 0.00066 17.2 3.0 40 2-43 28-67 (109)
15 d1q6za1 c.31.1.3 (A:182-341) B 43.3 7.2 0.00052 17.8 2.5 43 25-67 5-48 (160)
16 d2ji7a1 c.31.1.3 (A:195-369) O 42.8 7 0.00051 17.9 2.4 40 26-65 6-46 (175)
17 d1t9ba1 c.31.1.3 (A:290-460) A 42.3 11 0.00078 16.8 3.3 35 31-65 2-38 (171)
18 d1ft9a1 a.4.5.4 (A:134-213) CO 41.9 11 0.00083 16.7 4.1 40 11-50 29-69 (80)
19 d1vzya2 g.81.1.1 (A:234-290) H 35.6 5.7 0.00042 18.4 1.0 25 21-45 1-34 (57)
20 d1j5ya1 a.4.5.1 (A:3-67) Putat 32.3 16 0.0012 15.7 4.5 37 12-48 22-59 (65)
21 d1pvda1 c.31.1.3 (A:182-360) P 31.0 17 0.0012 15.7 2.7 40 27-66 18-58 (179)
22 d1ovma1 c.31.1.3 (A:181-341) I 28.2 13 0.00094 16.3 1.8 36 30-65 20-56 (161)
23 d1z6ra1 a.4.5.63 (A:12-81) Mlc 27.4 20 0.0014 15.2 4.6 41 3-45 12-52 (70)
24 d1z05a1 a.4.5.63 (A:10-80) Tra 27.2 20 0.0015 15.2 4.4 39 6-46 16-54 (71)
25 d1tw3a1 a.4.5.29 (A:14-98) Car 26.7 20 0.0015 15.2 5.2 43 7-51 31-73 (85)
26 d2ihta1 c.31.1.3 (A:198-374) C 25.8 19 0.0014 15.3 2.3 41 26-66 6-47 (177)
27 d2hoea1 a.4.5.63 (A:10-71) N-a 25.8 21 0.0015 15.1 3.8 37 8-46 10-46 (62)
28 d1xjha_ g.81.1.1 (A:) HSP33, C 25.7 11 0.00077 16.8 1.0 27 19-45 4-39 (62)
29 d1zpda1 c.31.1.3 (A:188-362) P 25.2 21 0.0015 15.1 2.4 36 30-65 13-49 (175)
30 d1vq0a2 g.81.1.1 (A:231-287) H 24.2 12 0.0009 16.5 1.1 32 22-53 1-43 (57)
31 d2v9va2 a.4.5.35 (A:438-510) C 20.9 27 0.0019 14.5 5.0 46 5-50 17-66 (73)
No 1
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=82.04 E-value=1.6 Score=21.63 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=35.2
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 0048987502799977719999999999999985391899389
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
|.-|..|| .++-||...|+|.-+.+.|++.|...|-|....|
T Consensus 21 ~~~G~~LP-s~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g 62 (74)
T d1hw1a1 21 FPPGTILP-AERELSELIGVTRTTLREVLQRLARDGWLTIQHG 62 (74)
T ss_dssp SCTTSBCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99949983-4999999989798999999999998891899808
No 2
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=80.82 E-value=0.81 Score=23.32 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCCE
Q ss_conf 210004898750279997771999999999999998539189-938924
Q gi|254781152|r 2 ISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIF-IQEGNI 49 (155)
Q Consensus 2 v~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~-l~DG~L 49 (155)
...|..+|=-|-..+-+|..+|++.+..+.++.+|.+.|.+. +.+..-
T Consensus 13 ~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~~d~y 61 (64)
T d1lvaa3 13 EDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFY 61 (64)
T ss_dssp HHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBE
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999986999995999998919999999999999997897798536540
No 3
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.02 E-value=1.5 Score=21.75 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=26.1
Q ss_pred CHHHHH-HHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 027999-77719999999999999985391899
Q gi|254781152|r 13 DNDKYI-AGVCGCSIRRWRNIRAILEKFNKIFI 44 (155)
Q Consensus 13 ~N~r~L-Ag~CGCSvKkFr~aLd~Ll~~GKI~l 44 (155)
.+.+-| +.+.|.|....+.|+|+|...|+|+-
T Consensus 24 i~~~el~~~l~~~~~~~i~~aid~L~~eG~IYs 56 (69)
T d1dpua_ 24 LNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYS 56 (69)
T ss_dssp EEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEC
T ss_conf 389999988169999999999999983785551
No 4
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=75.39 E-value=2.7 Score=20.31 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 00048987502799977719999999999999985391899389
Q gi|254781152|r 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 4 MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
-|.-|..|+ ++-||...|+|.-..+.|+..|...|-|....|
T Consensus 19 ~~~~G~~l~--~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~ 60 (69)
T d2hs5a1 19 TFRPGARLS--EPDICAALDVSRNTVREAFQILIEDRLVAHELN 60 (69)
T ss_dssp SSCTTCEEC--HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999929669--999999989798999999999998896899759
No 5
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=72.09 E-value=3.3 Score=19.79 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=35.0
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 0048987502799977719999999999999985391899389
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
|.-|..||. ++-||...|+|.-+-+.|+..|...|-|.-..|
T Consensus 16 l~~G~~LPs-e~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 57 (78)
T d3bwga1 16 LQQGDKLPV-LETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 57 (78)
T ss_dssp CCTTCBCCC-HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999399937-999999988798999999999998893899718
No 6
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=61.59 E-value=5 Score=18.74 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHH
Q ss_conf 8750279997771999999999999998539189938924218999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE 55 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVE 55 (155)
|++..-+-||..+|+|.-+.-+++.-|.+.|-|....+.+.=.+.+
T Consensus 28 ~~~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~~~~i~I~d~~ 73 (80)
T d3e5ua1 28 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLG 73 (80)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----CEESCHH
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHH
T ss_conf 6379999999998877889999999999899699639999986899
No 7
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=61.25 E-value=5.5 Score=18.51 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 87502799977719999999999999985391899389242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
.++.+-+-||..+|.|-.+.-..+.-|.+.|.|...++.+--.+.+.
T Consensus 27 ~i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~~~~~i~I~d~~~ 73 (82)
T d2zcwa1 27 VLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKG 73 (82)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH
T ss_conf 60589999999989889999999999998998896499999848999
No 8
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=59.01 E-value=6 Score=18.28 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 87502799977719999999999999985391899389242
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
+++..-+-||..+|+|--+.-.++.-|.+.|-|...++.+.
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~~~~I~ 67 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIV 67 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred ECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 61789999998979979999999999998898897699999
No 9
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=56.30 E-value=2.1 Score=20.95 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred HCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 0048987502799977719999999999999985391899389
Q gi|254781152|r 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 (155)
Q Consensus 5 YdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG 47 (155)
|.-|..|| +++.||...|+|.-+-+.|++.|.+.|-|....|
T Consensus 27 l~~G~~LP-s~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 68 (100)
T d1v4ra1 27 LAPGDTLP-SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA 68 (100)
T ss_dssp CCTTSBCC-CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred CCCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99939883-6999999988798999999999998896899648
No 10
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=50.54 E-value=7.1 Score=17.84 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHH
Q ss_conf 999999999985391-899389242189999999756778
Q gi|254781152|r 27 RRWRNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEER 65 (155)
Q Consensus 27 KkFr~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer 65 (155)
..-..+++.|.+.-+ +++.+++.|.+++.+|+.++.|+-
T Consensus 8 ~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~ 47 (179)
T d1ozha1 8 DAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETS 47 (179)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHCHHHHHHHHHHHHHHC
T ss_conf 9999999999967997999851127130899999999743
No 11
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=50.03 E-value=8.4 Score=17.41 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHH
Q ss_conf 87502799977719999999999999985391899389242189999
Q gi|254781152|r 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK 56 (155)
Q Consensus 10 PL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEe 56 (155)
+++..-+-||..+|+|--+.-.++.-|.+.|-|....+.+.=.+.+.
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~~~i~I~d~~~ 73 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDR 73 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred EECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHH
T ss_conf 60689999999979989999999999998997896399999838999
No 12
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.79 E-value=10 Score=16.92 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=30.9
Q ss_pred HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 00048987502799977719999999999999985391899
Q gi|254781152|r 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI 44 (155)
Q Consensus 4 MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l 44 (155)
+...++. .+-+.||..+|+|.++.++-++.|.+.|.++.
T Consensus 13 ~L~~~~~--~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~ 51 (63)
T d1biaa1 13 LLANGEF--HSGEQLGETLGMSRAAINKHIQTLRDWGVDVF 51 (63)
T ss_dssp HHTTSSC--BCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9997895--87999999989399999999999998799379
No 13
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=44.49 E-value=10 Score=16.90 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHH
Q ss_conf 75027999777199999999999999853918993892421899
Q gi|254781152|r 11 IPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRV 54 (155)
Q Consensus 11 L~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RV 54 (155)
++..-+-||..+|+|--+.-.++..|.+.|-|...+|.+.=.+.
T Consensus 26 i~lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~i~I~d~ 69 (73)
T d1zyba1 26 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDA 69 (73)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEESCG
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCH
T ss_conf 50699999989798899999999999988989962999998567
No 14
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=43.44 E-value=9 Score=17.25 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 210004898750279997771999999999999998539189
Q gi|254781152|r 2 ISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIF 43 (155)
Q Consensus 2 v~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~ 43 (155)
..++..+||+. ..-||..+|.|.-.-..+++-|.+.|-|.
T Consensus 28 ~~L~~~~~~~t--~~eLa~~~~i~~~tvs~~l~~L~~~GlV~ 67 (109)
T d2d1ha1 28 LKMVEIEKPIT--SEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHCSCEE--HHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHCCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99997698988--99999998856769999999999789979
No 15
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=43.29 E-value=7.2 Score=17.83 Aligned_cols=43 Identities=5% Similarity=0.061 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985391-89938924218999999975677887
Q gi|254781152|r 25 SIRRWRNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEERQE 67 (155)
Q Consensus 25 SvKkFr~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer~~ 67 (155)
|.+...++++.|....+ +++.+++.++.++.+|+.++.|+-.-
T Consensus 5 ~~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~ 48 (160)
T d1q6za1 5 NDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKA 48 (160)
T ss_dssp CHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf 99999999999981899799989581413251689999986595
No 16
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=42.76 E-value=7 Score=17.88 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHH
Q ss_conf 9999999999985391-899389242189999999756778
Q gi|254781152|r 26 IRRWRNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEER 65 (155)
Q Consensus 26 vKkFr~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer 65 (155)
...-..++++|.+..+ +++.+++.|..++.+|+.++.|+-
T Consensus 6 ~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~ 46 (175)
T d2ji7a1 6 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEET 46 (175)
T ss_dssp HHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 99999999999848998999887924110279999976530
No 17
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.32 E-value=11 Score=16.80 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=27.1
Q ss_pred HHHHHHHHCCC-EEEECCC-EECHHHHHHHHHHHHHH
Q ss_conf 99999985391-8993892-42189999999756778
Q gi|254781152|r 31 NIRAILEKFNK-IFIQEGN-IYNVRVEKEIIKASEER 65 (155)
Q Consensus 31 ~aLd~Ll~~GK-I~l~DG~-LWN~RVEeEL~n~sEer 65 (155)
+|.++|.+.-+ +++.+++ .|....++|+.++.|+-
T Consensus 2 kaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~ 38 (171)
T d1t9ba1 2 KAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRA 38 (171)
T ss_dssp HHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 8899999779949998957322005899999999956
No 18
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=41.86 E-value=11 Score=16.65 Aligned_cols=40 Identities=23% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CCEE
Q ss_conf 750279997771999999999999998539189938-9242
Q gi|254781152|r 11 IPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE-GNIY 50 (155)
Q Consensus 11 L~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D-G~LW 50 (155)
++..-+-||..+|+|--+.-.++..|.+.|.|...+ |.+-
T Consensus 29 ~~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~~~~i~ 69 (80)
T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYT 69 (80)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEE
T ss_conf 37899999999798899999999999988988978999599
No 19
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=35.64 E-value=5.7 Score=18.38 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=18.1
Q ss_pred HHCCCHHHHHHHHHHH---------HHCCCEEEE
Q ss_conf 7199999999999999---------853918993
Q gi|254781152|r 21 VCGCSIRRWRNIRAIL---------EKFNKIFIQ 45 (155)
Q Consensus 21 ~CGCSvKkFr~aLd~L---------l~~GKI~l~ 45 (155)
+|+||..|+.++|..| .+.|+|.+.
T Consensus 1 ~C~Cs~er~~~~L~~l~~~el~~~~~e~g~iev~ 34 (57)
T d1vzya2 1 HCPCSKERFETAILGLGKKEIQDMIEEDGQAEAV 34 (57)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHSEEEEE
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEE
T ss_conf 9989889999999936999999999739978998
No 20
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=32.30 E-value=16 Score=15.75 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEEECCC
Q ss_conf 502799977719999999999999985391-8993892
Q gi|254781152|r 12 PDNDKYIAGVCGCSIRRWRNIRAILEKFNK-IFIQEGN 48 (155)
Q Consensus 12 ~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GK-I~l~DG~ 48 (155)
+..-+-||..+|+|.++.+.-++.|.+.|. |.-..|+
T Consensus 22 ~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~gG 59 (65)
T d1j5ya1 22 PVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRG 59 (65)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 78599999997989999999999999879927996798
No 21
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.98 E-value=17 Score=15.69 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHHH
Q ss_conf 999999999985391-8993892421899999997567788
Q gi|254781152|r 27 RRWRNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEERQ 66 (155)
Q Consensus 27 KkFr~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer~ 66 (155)
..-..+++.|.+.-+ +++.+++++...+++|+.++.|+-.
T Consensus 18 ~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~ 58 (179)
T d1pvda1 18 EVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQ 58 (179)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999998578978998555014340799999999627
No 22
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}
Probab=28.22 E-value=13 Score=16.33 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHH
Q ss_conf 999999985391-899389242189999999756778
Q gi|254781152|r 30 RNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEER 65 (155)
Q Consensus 30 r~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer 65 (155)
.++++.|-...+ +++.|++.|...+++|+.++.|+-
T Consensus 20 ~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~ 56 (161)
T d1ovma1 20 DAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEV 56 (161)
T ss_dssp HHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999828996899895937550699999999964
No 23
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.39 E-value=20 Score=15.25 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=33.8
Q ss_pred CHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 1000489875027999777199999999999999853918993
Q gi|254781152|r 3 SLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQ 45 (155)
Q Consensus 3 ~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~ 45 (155)
++.-+.+|+.. .-||..+|-|.-+-..+++.|++.|.|.+.
T Consensus 12 ~~i~~~g~~sr--~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 12 RLIDQLGPVSR--IDLSRLAQLAPASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHSSCSCCH--HHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHCCCCCH--HHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999499289--999999894999999999999988997860
No 24
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=27.17 E-value=20 Score=15.22 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 04898750279997771999999999999998539189938
Q gi|254781152|r 6 DRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 6 drGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
...+|+.. .-||..+|.|..+-..+++.|++.|.|...+
T Consensus 16 ~~~g~~sr--~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 16 DQKGPISR--IDLSKESELAPASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHCSBCH--HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHCCCCCH--HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 98599489--9999998878878999999999889879716
No 25
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=26.72 E-value=20 Score=15.18 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEC
Q ss_conf 489875027999777199999999999999853918993892421
Q gi|254781152|r 7 RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYN 51 (155)
Q Consensus 7 rGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN 51 (155)
.+|| .+.+-||..||++....+.++.+|...|-+...+.+.|.
T Consensus 31 ~~gp--~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~ 73 (85)
T d1tw3a1 31 LAGA--RTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFV 73 (85)
T ss_dssp HTTC--CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred CCCC--CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEE
T ss_conf 5499--999999988492926999999999877975746999385
No 26
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=25.77 E-value=19 Score=15.31 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHHH
Q ss_conf 9999999999985391-8993892421899999997567788
Q gi|254781152|r 26 IRRWRNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEERQ 66 (155)
Q Consensus 26 vKkFr~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer~ 66 (155)
.+....+++.|.+.-+ +++.+++.|+..+.+|+..+.|+-.
T Consensus 6 ~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~ 47 (177)
T d2ihta1 6 QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLN 47 (177)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCE
T ss_conf 999999999998079979999968253426999999753155
No 27
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=25.76 E-value=21 Score=15.07 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 898750279997771999999999999998539189938
Q gi|254781152|r 8 GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE 46 (155)
Q Consensus 8 GgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~D 46 (155)
.+|+ .-.-||..+|-|.-+-..+++.|++.|.|.+.+
T Consensus 10 ~~pi--sr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~~ 46 (62)
T d2hoea1 10 KSPV--SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 46 (62)
T ss_dssp HSCB--CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HCCC--CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 7896--999999998939999999999999889878779
No 28
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.68 E-value=11 Score=16.82 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=18.6
Q ss_pred HHHHCCCHHHHHHHHHHH---------HHCCCEEEE
Q ss_conf 777199999999999999---------853918993
Q gi|254781152|r 19 AGVCGCSIRRWRNIRAIL---------EKFNKIFIQ 45 (155)
Q Consensus 19 Ag~CGCSvKkFr~aLd~L---------l~~GKI~l~ 45 (155)
.-.|+||..|+..+|..| .+.|+|.+.
T Consensus 4 ~f~C~CS~er~~~~L~~l~~~El~~~~~e~g~iev~ 39 (62)
T d1xjha_ 4 EFKCTCSRERCADALKTLPDEEVDSILAEDGEIDMH 39 (62)
T ss_dssp SCCCSSCHHHHHHHHHTSCHHHHHHHHHHHSEEEEE
T ss_pred CEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEE
T ss_conf 677799989999999936999999999628978998
No 29
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}
Probab=25.21 E-value=21 Score=15.09 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCC-EEEECCCEECHHHHHHHHHHHHHH
Q ss_conf 999999985391-899389242189999999756778
Q gi|254781152|r 30 RNIRAILEKFNK-IFIQEGNIYNVRVEKEIIKASEER 65 (155)
Q Consensus 30 r~aLd~Ll~~GK-I~l~DG~LWN~RVEeEL~n~sEer 65 (155)
..+++.|-...+ +++.++++|...+.+|+.++.|+-
T Consensus 13 ~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~ 49 (175)
T d1zpda1 13 DETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDAL 49 (175)
T ss_dssp HHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999828997999896833220299999999862
No 30
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.24 E-value=12 Score=16.45 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=20.6
Q ss_pred HCCCHHHHHHHHH--------HHHHCCCEEEEC---CCEECHH
Q ss_conf 1999999999999--------998539189938---9242189
Q gi|254781152|r 22 CGCSIRRWRNIRA--------ILEKFNKIFIQE---GNIYNVR 53 (155)
Q Consensus 22 CGCSvKkFr~aLd--------~Ll~~GKI~l~D---G~LWN~R 53 (155)
|.||..++..+|. .+++.|+|.+.= |.-|.-.
T Consensus 1 C~CS~er~~~~L~~l~~~el~~m~~eg~iev~C~FC~~~Y~f~ 43 (57)
T d1vq0a2 1 CDCNREKAKNALLVLDKKELEDMRKEGKGEVVCKWCNTRYVFS 43 (57)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHHHHHTCEEEECTTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCEEEEC
T ss_conf 9698899999999389999999998598699847889988789
No 31
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=20.92 E-value=27 Score=14.51 Aligned_cols=46 Identities=2% Similarity=0.067 Sum_probs=31.9
Q ss_pred HCCCCCCCC--HHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf 004898750--279997771--9999999999999985391899389242
Q gi|254781152|r 5 YDRGGSIPD--NDKYIAGVC--GCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155)
Q Consensus 5 YdrGgPL~~--N~r~LAg~C--GCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155)
|++.-|+.. .-+.|-... +.+-+-|..+++.|++.|.|...++.+.
T Consensus 17 fH~~~P~~~G~~keeLr~~l~~~~~~~~f~~lL~~l~~~g~l~~~g~~v~ 66 (73)
T d2v9va2 17 FHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVA 66 (73)
T ss_dssp HHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred HHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHEECCEEE
T ss_conf 99878433287999999771234999999999999997897000089878
Done!