RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)



>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (D:363-647)
          Length = 285

 Score = 30.2 bits (68), Expect = 0.13
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 17/66 (25%)

Query: 27  RRWRNIRAILEK------------FNKIFIQEGNIYNV-----RVEKEIIKASEERQENG 69
           +  +N++  + +             N+I++ +GN+  +      V++E     E+ +  G
Sbjct: 58  KTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEG 117

Query: 70  RKGGIK 75
              GI+
Sbjct: 118 VATGIR 123


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (C:359-648)
          Length = 290

 Score = 30.2 bits (68), Expect = 0.14
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 17/66 (25%)

Query: 27  RRWRNIRA-ILEK-----------FNKIFIQEGNIYNV-----RVEKEIIKASEERQENG 69
           +  +N++  I EK            N+I++ +GN+  +      V++E     E+ +  G
Sbjct: 62  KTKKNVKINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEG 121

Query: 70  RKGGIK 75
              GI+
Sbjct: 122 VATGIR 127


>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
           {Pseudomonas putida} (A:1-165,A:341-398)
          Length = 223

 Score = 26.3 bits (57), Expect = 2.2
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 11  IPDNDKYIAGVCGCSIRRWRNI-RAILEKFNKIFIQEGNIYNVRV 54
           +PD DK +  +   +++  R + +AI+  +++I I E  +  V+V
Sbjct: 151 LPDRDKAMEKIRDLTMKYNRALMQAIM--WDRINIAE--VVGVQV 191


>2fz6_A Hydrophobin-1; beta barrel, pseudo-merohedral twinning,
           amphiphIle, surface active protein; 2.10A {Hypocrea
           jecorina} PDB: 2gvm_A* (A:)
          Length = 75

 Score = 25.1 bits (55), Expect = 4.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 128 ALCCATDVL 136
             CCAT VL
Sbjct: 16  PQCCATQVL 24


>3go5_A Multidomain protein with S1 RNA-binding domains;
          structural genomics, joint center for structural
          genomics, JCSG; HET: MSE; 1.40A {Streptococcus
          pneumoniae TIGR4} (A:220-285)
          Length = 66

 Score = 25.3 bits (56), Expect = 4.2
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 4  LYDRGGSIPDNDK----YIAGVCGCSIRRWRNIRAI--LEKFNKIFIQEGNIY 50
          L   GG    NDK     I    G S  +++  +A+  L K  KI   +    
Sbjct: 14 LESNGGFXTLNDKSSPDDIKATFGISKGQFK--KALGGLXKAGKIKQDQFGTE 64


>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A
          catalytic subunit alpha isoform; protein-protein
          complex, heat repeat, signaling protein; HET: OKA;
          2.60A {Homo sapiens} (C:)
          Length = 309

 Score = 25.3 bits (54), Expect = 4.4
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASE 63
             + D++I  +  C       ++++ EK  +I  +E N+    V   +    +
Sbjct: 6  FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNV--QEVRCPVTVCGD 57


>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
          immunosuppression; 2.10A {Homo sapiens} (A:1-344)
          Length = 344

 Score = 24.9 bits (53), Expect = 5.1
 Identities = 8/44 (18%), Positives = 14/44 (31%)

Query: 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53
            P  D   A +             I+ +   I  QE N+ ++ 
Sbjct: 39 GKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDID 82


>2b97_A Hydrophobin II, hfbii; ultra-high resolution, surfactant,
           amphiphilic, surface active protein; 0.75A {Hypocrea
           jecorina} (A:)
          Length = 71

 Score = 25.1 bits (55), Expect = 5.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 128 ALCCATDVL 136
            LCCAT+VL
Sbjct: 11  PLCCATNVL 19


>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
           complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
           2du4_A 2du5_A* 2du6_A* (A:349-534)
          Length = 186

 Score = 24.7 bits (54), Expect = 5.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 39  FNKIFIQEGNIYNVRVEKEIIKASEE 64
            N++ + +G+IY +   K+     EE
Sbjct: 83  ANEVVVYKGDIYGIPKTKKWRSFFEE 108


>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR
           {Morganella morganii} (A:)
          Length = 61

 Score = 24.7 bits (54), Expect = 5.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 125 LVIALCCATDVLIHHYGIV 143
            ++AL   T VL+   G+V
Sbjct: 5   TLVALSSFTPVLVILLGVV 23


>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active
           site calcium IONS, alpha/beta structure; HET: DNA; 2.20A
           {Bacillus subtilis} (A:)
          Length = 299

 Score = 24.2 bits (52), Expect = 9.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 72  GGIKSSQMRILSKKTNNLFQGTLKPAHV 99
           GGI+++Q  I   +++ +F  T+ P ++
Sbjct: 173 GGIQNNQQTIQGPRSSQIFLPTIPPLYI 200


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,210,022
Number of extensions: 50965
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 20
Length of query: 155
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 74
Effective length of database: 2,217,844
Effective search space: 164120456
Effective search space used: 164120456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)