RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
(155 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.0 bits (88), Expect = 9e-04
Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 88/187 (47%)
Query: 32 IRAILEKFNKIFIQEGNIYNV------------RVEKEIIK----ASEERQENGRKGGIK 75
+ L +F +++ +I+ + KE+IK A + K
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK-KSN 142
Query: 76 SSQMRILSKKTNNLF-----QG--------------TLKP-------------------- 96
S+ R + + L QG T
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 97 ---AHVFQK----------PESI--NNY--SAPVDFEKINPNPLNLVIALCCATDVLIHH 139
VF + P + +Y S P+ PL VI L H
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC------PLIGVIQLA--------H 248
Query: 140 YGIVTSR 146
Y +VT++
Sbjct: 249 Y-VVTAK 254
Score = 37.2 bits (86), Expect = 0.002
Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 83/190 (43%)
Query: 17 YIAGVCGCSIRRWRNIR--AILEKFNK-------IFIQEGNI-------------YNVRV 54
YI + R + A+ + IF +GN Y+V V
Sbjct: 126 YITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 55 EKEIIKASEER-QENGRKGGIKSSQMRILSKKTNN---LF-QGTLKPAHVFQKPESI--N 107
++IK S E E L + T + +F QG L + P +
Sbjct: 185 G-DLIKFSAETLSE--------------LIRTTLDAEKVFTQG-LNILEWLENPSNTPDK 228
Query: 108 NY--SAPVDFEKINPNPLNLVIALC-----C----------------ATDVLIHHYGIVT 144
+Y S P+ PL VI L AT H G+VT
Sbjct: 229 DYLLSIPISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG---HSQGLVT 279
Query: 145 SRRKNDTIIS 154
+ I+
Sbjct: 280 A-----VAIA 284
Score = 26.4 bits (58), Expect = 3.1
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 24/107 (22%)
Query: 17 YIAGVCGCSIRRWRNIRA-ILE-------KFNKIF--IQEGNI-YNVRVEKEIIKASEER 65
+ G G IR N A I E K KIF I E + Y R EK ++ A++
Sbjct: 1675 HFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 66 QENGRKGGIKSSQMRILSKKT-NNLFQGTLKPAHVFQKPESINNYSA 111
Q + ++ K +L L PA S+ Y+A
Sbjct: 1733 Q----------PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.1 bits (82), Expect = 0.004
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 25/86 (29%)
Query: 25 SIRRWR-NIRAILEKFN---KIFIQEGNIYNVRVEKEIIKASEERQE-NGRKGGIKSSQM 79
SIR+WR R L++ + K+ QE +E KA ++ +E N R +S Q+
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEW--------RE--KAKKDLEEWNQR----QSEQV 131
Query: 80 RILSKKTNNLFQGTLKPAHVFQKPES 105
K NN + +Q+P++
Sbjct: 132 E--KNKINN----RIADKAFYQQPDA 151
>2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose
utilization, blood group antigen; HET: A2G GAL FUC;
1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A*
2wmi_B*
Length = 606
Score = 31.0 bits (70), Expect = 0.12
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 28 RWRNIRAILEKFNKIFIQE--GNIYNVRVE 55
+ + +A E NK++ G+I+ +++
Sbjct: 423 EFSSTQARKEYLNKLYPMNYEGDIFAQKLD 452
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.0 bits (64), Expect = 0.44
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 43 FIQEGNIYNVRVEKEIIKASEERQE------------NGRKGGIKSSQMRILSKKTNNLF 90
F+ E + ++ KE+++ SE R+ NG +Q+ I + L
Sbjct: 733 FVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLD 792
Query: 91 QGTLKPAHVFQKPESINNYSAPVDFE 116
LKP +++ + I AP + E
Sbjct: 793 FPELKP---YKQVKQI----APAELE 811
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 28.4 bits (63), Expect = 0.81
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 26 IRRWRNIRAILEKFNKIFIQE--GNIYNVRVE 55
+ + + + N ++ + G+ Y RV
Sbjct: 397 TKNSEELSSKVNYLNSLYPKLYEGDGYAQRVG 428
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 685
Score = 27.6 bits (61), Expect = 1.2
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 39 FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75
N+I++ +GN+ + V++E E+ + G GI+
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 665
Score = 27.2 bits (60), Expect = 1.7
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 39 FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75
N+I++ +GN+ + V++E E+ + G GI+
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 648
Score = 26.9 bits (59), Expect = 1.9
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 39 FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75
N+I++ +GN+ + V++E E+ + G GI+
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 26.9 bits (59), Expect = 1.9
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 39 FNKIFIQEGNIYNVRVEKEIIKAS-EERQENGRKGGIKS 76
N+I++ +GN+ + + +K ++ E G+ G+ +
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVAT 482
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 26.3 bits (57), Expect = 3.5
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 8 GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47
GS P+ + Y V S R + + K ++ G
Sbjct: 83 EGSTPNGNDYDRDVVIISTLRLDKLHVL-GKGEQVLAYPG 121
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3c5w_C
2ie3_C* 3fga_C* 2iae_C* 2nym_C* 2nyl_C*
Length = 309
Score = 26.1 bits (57), Expect = 3.6
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 6 DRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53
D + D++I + C ++++ EK +I +E N+ VR
Sbjct: 2 DEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVR 49
>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A
{Pseudomonas putida}
Length = 311
Score = 25.6 bits (56), Expect = 4.5
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 22 CGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMR 80
G +R +L FN GN + + + ++ + R G + +
Sbjct: 108 AGFDDGEIEKVRRVLYAFN-----YGNPKYLLLITALSESMQMRPVGGAEVSSELRASI 161
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 25.7 bits (56), Expect = 5.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 39 FNKIFIQEGNIYNVRVEKEIIKASEE 64
N++ + +G+IY + K+ EE
Sbjct: 431 ANEVVVYKGDIYGIPKTKKWRSFFEE 456
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling,
oligomerization domain, DNA-binding protein; HET: DNA;
2.00A {Bacillus subtilis}
Length = 135
Score = 25.3 bits (55), Expect = 5.6
Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 13/83 (15%)
Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKF----------NKIFIQEGNIY 50
+ ++G P ++ + S+ N + + E
Sbjct: 41 IKMHLEKGSYFPTPNQ-LQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL 99
Query: 51 NVRVEK--EIIKASEERQENGRK 71
K E I+ ++ + + +
Sbjct: 100 QPLWGKLYEYIQLAQNQTQERKA 122
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 25.3 bits (55), Expect = 5.7
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 31 NIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
NIR L K N F E NVR E+ K
Sbjct: 90 NIRQGLNK-NLGFSPEDREENVRRIAEVAK 118
>2b97_A Hydrophobin II, hfbii; ultra-high resolution, surfactant,
amphiphilic, surface active protein; 0.75A {Hypocrea
jecorina} SCOP: b.138.1.1 PDB: 1r2m_A 2pl6_A* 2pl7_A*
Length = 71
Score = 25.1 bits (55), Expect = 7.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 128 ALCCATDVL 136
LCCAT+VL
Sbjct: 11 PLCCATNVL 19
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,392,758
Number of extensions: 62264
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 28
Length of query: 155
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 71
Effective length of database: 3,656,734
Effective search space: 259628114
Effective search space used: 259628114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)