RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)



>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
          subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 288

 Score = 27.3 bits (60), Expect = 0.56
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 11 IPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53
            + D++I  +  C       ++++ EK  +I  +E N+  VR
Sbjct: 2  TKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVR 44


>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white
          birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
          Length = 159

 Score = 25.6 bits (56), Expect = 1.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 37 EKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIK 75
           +  K FI +G+    +V  + I + E  + NG  G IK
Sbjct: 16 ARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIK 54


>d2b97a1 b.138.1.1 (A:1-70) Hydrophobin II, HfbII {Trichoderma
           reesei [TaxId: 51453]}
          Length = 70

 Score = 24.7 bits (54), Expect = 3.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 128 ALCCATDVL 136
            LCCAT+VL
Sbjct: 11  PLCCATNVL 19


>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 880

 Score = 24.3 bits (52), Expect = 5.1
 Identities = 12/104 (11%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 59  IKASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPE-------SINNYSA 111
           ++ +E+ +    K G+    +  LS  T  + +  L P    ++         S+ +   
Sbjct: 605 LRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDV 664

Query: 112 PVDFEKINPNPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155
              + + N + +    +     ++     G   ++R+    + +
Sbjct: 665 YRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVES 708


>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus
           subtilis [TaxId: 1423]}
          Length = 299

 Score = 24.2 bits (52), Expect = 5.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 71  KGGIKSSQMRILSKKTNNLFQGTLKPAHV 99
           +GGI+++Q  I   +++ +F  T+ P ++
Sbjct: 172 EGGIQNNQQTIQGPRSSQIFLPTIPPLYI 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,327
Number of extensions: 27361
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 15
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)