BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 155

 Score =  319 bits (818), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK
Sbjct: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120
           ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP
Sbjct: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120

Query: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155
           NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN
Sbjct: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155


>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 898

 Score = 22.7 bits (47), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 36  LEKFNKIFIQEGNIYNVRVEKEIIKASEE 64
           LE+   +  ++ N Y++ + K +I+ASE+
Sbjct: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ 258


>gi|254780712|ref|YP_003065125.1| 30S ribosomal protein S16 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 116

 Score = 22.3 bits (46), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 123 LNLVIALCCATDVLIHHYGIVTS 145
           + L I L C      HHY IV +
Sbjct: 1   MTLKIRLACGGSKSRHHYRIVVA 23


>gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 126

 Score = 22.3 bits (46), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 31 NIRAILEKFNKIFIQEGNIYNVRVEKE 57
          NI +I+EK + + + E    + R+EKE
Sbjct: 3  NIESIVEKLSSLTLIEAAELSKRLEKE 29


>gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 167

 Score = 21.9 bits (45), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 107 NNYSAPVDFEKINPNPLNL 125
           +NYS PV  + +   P+NL
Sbjct: 5   SNYSYPVSVQAVFSTPMNL 23


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 21.9 bits (45), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 57  EIIKASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQ-KPESINNY 109
           E I+ + E+        + S   R L+++ N+ F  T+K  H+ + + E+I ++
Sbjct: 310 EYIRMNGEKIHGASIHDLISHNNRNLAQEINDKFSNTMKDFHILKDRAENIESF 363


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,034
Number of Sequences: 1233
Number of extensions: 4202
Number of successful extensions: 16
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 12
length of query: 155
length of database: 328,796
effective HSP length: 67
effective length of query: 88
effective length of database: 246,185
effective search space: 21664280
effective search space used: 21664280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 35 (18.1 bits)