Query gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:31:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781153.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gh9a_ g.41.6.1 (A:) Hypothet 3.1 90 0.0066 13.9 -0.7 13 14-26 27-39 (71)
2 d1ejxb_ b.85.3.1 (B:) Urease, 2.8 1.5E+02 0.011 13.0 -0.0 13 3-15 27-39 (101)
3 d1x63a1 g.39.1.3 (A:8-44) Four 2.7 1.7E+02 0.012 12.7 0.3 15 7-21 15-29 (37)
4 d4ubpb_ b.85.3.1 (B:) Urease, 2.6 1.5E+02 0.011 12.9 -0.0 13 3-15 29-41 (122)
5 d1jlia_ a.26.1.2 (A:) Interleu 2.5 2E+02 0.014 12.4 0.4 14 14-27 24-37 (112)
6 d1u7za_ c.72.3.1 (A:) Coenzyme 2.3 85 0.0062 14.0 -1.7 18 10-27 11-28 (223)
7 d1e9ya1 b.85.3.1 (A:106-238) U 2.0 2.1E+02 0.015 12.3 -0.0 13 3-15 27-39 (133)
8 d1syya_ a.25.1.2 (A:) Ribonucl 1.9 2.6E+02 0.019 11.9 0.2 17 9-25 4-20 (317)
9 d2qkwa1 a.8.8.1 (A:29-129) Avi 1.5 2E+02 0.014 12.4 -0.9 20 5-24 63-83 (101)
10 d1tafa_ a.22.1.3 (A:) TAF(II)4 1.5 3.6E+02 0.026 11.3 0.5 16 11-26 48-63 (68)
No 1
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.12 E-value=90 Score=13.93 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=9.9
Q ss_pred CEECCCCHHHHHH
Q ss_conf 3020542466787
Q gi|254781153|r 14 EKRVNVDDKRILT 26 (30)
Q Consensus 14 ekrvnvddkrilt 26 (30)
.|.+||.+.||+.
T Consensus 27 GkT~nVK~RRIfk 39 (71)
T d1gh9a_ 27 GRTVNVKDRRIFG 39 (71)
T ss_dssp TEEEECCSSSCBS
T ss_pred CCEEEHHHHHHHH
T ss_conf 6520044665776
No 2
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=2.75 E-value=1.5e+02 Score=13.02 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=9.5
Q ss_pred CCCCCCHHHCCCE
Q ss_conf 6756770110430
Q gi|254781153|r 3 NNTGLSPIQAGEK 15 (30)
Q Consensus 3 nntglspiqagek 15 (30)
.|||--|||-|..
T Consensus 27 ~NtGDRpIQVGSH 39 (101)
T d1ejxb_ 27 ENHGDRPIQVGSH 39 (101)
T ss_dssp EECSSSCEEEETT
T ss_pred EECCCCCEEECCC
T ss_conf 7478862366162
No 3
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.70 E-value=1.7e+02 Score=12.72 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=10.5
Q ss_pred CCHHHCCCEECCCCH
Q ss_conf 770110430205424
Q gi|254781153|r 7 LSPIQAGEKRVNVDD 21 (30)
Q Consensus 7 lspiqagekrvnvdd 21 (30)
.-||.+|.|.|..-+
T Consensus 15 ~k~I~~G~k~veykg 29 (37)
T d1x63a1 15 FKAIVAGDQNVEYKG 29 (37)
T ss_dssp CCBCCSSSCEEECSS
T ss_pred CCCCCCCCEEEEECC
T ss_conf 981278985767178
No 4
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=2.65 E-value=1.5e+02 Score=12.93 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=8.7
Q ss_pred CCCCCCHHHCCCE
Q ss_conf 6756770110430
Q gi|254781153|r 3 NNTGLSPIQAGEK 15 (30)
Q Consensus 3 nntglspiqagek 15 (30)
-|||--|||-|..
T Consensus 29 ~NtGDRpIQVGSH 41 (122)
T d4ubpb_ 29 SNTGDRPIQVGSH 41 (122)
T ss_dssp EECSSSCEEEETT
T ss_pred EECCCCCEEECCC
T ss_conf 7479863255263
No 5
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.52 E-value=2e+02 Score=12.42 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=10.0
Q ss_pred CEECCCCHHHHHHH
Q ss_conf 30205424667876
Q gi|254781153|r 14 EKRVNVDDKRILTN 27 (30)
Q Consensus 14 ekrvnvddkriltn 27 (30)
+.-.|-|||+||.+
T Consensus 24 ~~~lNs~dk~~L~~ 37 (112)
T d1jlia_ 24 PNNLNSEDMDILME 37 (112)
T ss_dssp SCCCCHHHHHHHHS
T ss_pred CCCCCHHHHHHHHH
T ss_conf 78767388999988
No 6
>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}
Probab=2.27 E-value=85 Score=14.03 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=8.9
Q ss_pred HHCCCEECCCCHHHHHHH
Q ss_conf 110430205424667876
Q gi|254781153|r 10 IQAGEKRVNVDDKRILTN 27 (30)
Q Consensus 10 iqagekrvnvddkriltn 27 (30)
|-+|--+...|+-|.+||
T Consensus 11 ITaG~T~E~ID~VR~ItN 28 (223)
T d1u7za_ 11 ITAGPTREPLDPVRYISD 28 (223)
T ss_dssp EEESBCEEESSSSEEEEE
T ss_pred EECCCCCCCCCCCCEECC
T ss_conf 977887556788235262
No 7
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=2.00 E-value=2.1e+02 Score=12.29 Aligned_cols=13 Identities=38% Similarity=0.693 Sum_probs=8.5
Q ss_pred CCCCCCHHHCCCE
Q ss_conf 6756770110430
Q gi|254781153|r 3 NNTGLSPIQAGEK 15 (30)
Q Consensus 3 nntglspiqagek 15 (30)
-|||--|||-|..
T Consensus 27 ~NtGDRpIQVGSH 39 (133)
T d1e9ya1 27 KNVGDRPVQIGSH 39 (133)
T ss_dssp EECSSSCEEEETT
T ss_pred EECCCCCEEECCC
T ss_conf 7378863255263
No 8
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]}
Probab=1.87 E-value=2.6e+02 Score=11.94 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=12.6
Q ss_pred HHHCCCEECCCCHHHHH
Q ss_conf 01104302054246678
Q gi|254781153|r 9 PIQAGEKRVNVDDKRIL 25 (30)
Q Consensus 9 piqagekrvnvddkril 25 (30)
-+++|.+|+++.++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (317)
T d1syya_ 4 ILDGKQKRVNLNSKRLV 20 (317)
T ss_dssp SGGGGGGSCCGGGCCSS
T ss_pred HHHCCCCCCCCCCCEEE
T ss_conf 32153445671114026
No 9
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=1.55 E-value=2e+02 Score=12.44 Aligned_cols=20 Identities=50% Similarity=0.572 Sum_probs=12.8
Q ss_pred CCCCHHHCCC-EECCCCHHHH
Q ss_conf 5677011043-0205424667
Q gi|254781153|r 5 TGLSPIQAGE-KRVNVDDKRI 24 (30)
Q Consensus 5 tglspiqage-krvnvddkri 24 (30)
||-|-|..|- .+-||||-|-
T Consensus 63 tgasginpgmlp~envddmrs 83 (101)
T d2qkwa1 63 TGASGINPGMLPHENVDDMRS 83 (101)
T ss_dssp HTSCEEECSSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHH
T ss_conf 065678987687412488999
No 10
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=1.54 E-value=3.6e+02 Score=11.29 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=11.5
Q ss_pred HCCCEECCCCHHHHHH
Q ss_conf 1043020542466787
Q gi|254781153|r 11 QAGEKRVNVDDKRILT 26 (30)
Q Consensus 11 qagekrvnvddkrilt 26 (30)
.||.+.+++||-|+-.
T Consensus 48 HA~k~~id~dDVkLAi 63 (68)
T d1tafa_ 48 HARKKTIDLDDVRLAT 63 (68)
T ss_dssp HTTCSSBCHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHH
T ss_conf 1288989899999999
Done!