RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781153|ref|YP_003065566.1| hypothetical protein
CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
         (30 letters)



>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
          activation, iron coupled radical, immune evasion,
          replication; 1.70A {Chlamydia trachomatis} SCOP:
          a.25.1.2 PDB: 2ani_A
          Length = 346

 Score = 25.5 bits (55), Expect = 3.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 10 IQAGEKRVNVDDKRIL 25
          +   +KRVN++ KR++
Sbjct: 6  LDGKQKRVNLNSKRLV 21


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 5   TGLSPIQAGEKRVNVDD 21
           TG+  I AG   +N DD
Sbjct: 523 TGVRVIVAGTLDINPDD 539


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.312    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 219,764
Number of extensions: 3732
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 2
Length of query: 30
Length of database: 5,693,230
Length adjustment: 5
Effective length of query: 25
Effective length of database: 5,572,010
Effective search space: 139300250
Effective search space used: 139300250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.4 bits)