RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] (30 letters) >d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Score = 25.5 bits (55), Expect = 1.4 Identities = 6/16 (37%), Positives = 12/16 (75%) Query: 10 IQAGEKRVNVDDKRIL 25 + +KRVN++ KR++ Sbjct: 5 LDGKQKRVNLNSKRLV 20 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.312 0.132 0.353 Gapped Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 93,723 Number of extensions: 1609 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 30 Length of database: 2,407,596 Length adjustment: 4 Effective length of query: 26 Effective length of database: 2,352,676 Effective search space: 61169576 Effective search space used: 61169576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 47 (22.4 bits)