RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781154|ref|YP_003065567.1| hypothetical protein
CLIBASIA_05305 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)



>gnl|CDD|35960 KOG0741, KOG0741, KOG0741, AAA+-type ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 744

 Score = 24.2 bits (52), Expect = 7.2
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 18  DKAF-NTYRSQLRILITDNLSALI 40
            K F + Y+S L I++ D++  L+
Sbjct: 588 KKIFEDAYKSPLSIIVVDDIERLL 611


>gnl|CDD|153273 cd07589, BAR_DNMBP, The Bin/Amphiphysin/Rvs (BAR) domain of
          Dynamin Binding Protein.  BAR domains are dimerization,
          lipid binding and curvature sensing modules found in
          many different proteins with diverse functions. DyNamin
          Binding Protein (DNMBP), also called Tuba, is a
          Cdc42-specific Guanine nucleotide Exchange Factor (GEF)
          that binds dynamin and various actin regulatory
          proteins. It serves as a link between dynamin function,
          Rho GTPase signaling, and actin dynamics. It plays an
          important role in regulating cell junction
          configuration. DNMBP contains BAR and SH3 domains as
          well as a Dbl Homology domain (DH domain), which
          harbors GEF activity. BAR domains form dimers that bind
          to membranes, induce membrane bending and curvature,
          and may also be involved in protein-protein
          interactions. The BAR domain of DNMBP may be involved
          in binding to membranes. The gene encoding DNMBP is a
          candidate gene for late onset Alzheimer's disease.
          Length = 195

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 13 VVLIGDKAFNTYRSQLRILITDNLSALIS 41
          V  I  KA   ++S++R L+ + LS+L+ 
Sbjct: 71 VRGISSKALPEFKSRVRKLVIEPLSSLLK 99


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 711,373
Number of extensions: 25382
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 11
Length of query: 65
Length of database: 6,263,737
Length adjustment: 37
Effective length of query: 28
Effective length of database: 5,464,204
Effective search space: 152997712
Effective search space used: 152997712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)