BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781154|ref|YP_003065567.1| hypothetical protein
CLIBASIA_05305 [Candidatus Liberibacter asiaticus str. psy62]
(65 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 65
Score = 132 bits (331), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MTSWLKLQRDFGVVLIGDKAFNTYRSQLRILITDNLSALISSDKNITESGKEGIVKMDLS 60
MTSWLKLQRDFGVVLIGDKAFNTYRSQLRILITDNLSALISSDKNITESGKEGIVKMDLS
Sbjct: 1 MTSWLKLQRDFGVVLIGDKAFNTYRSQLRILITDNLSALISSDKNITESGKEGIVKMDLS 60
Query: 61 YVYTF 65
YVYTF
Sbjct: 61 YVYTF 65
>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 36.6 bits (83), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 2 TSWLKLQRDFGVVLIGDKAFNTYRSQLRILITD-------NLSALISS-DKNITESGKEG 53
T WL LQ DF + R Q + LITD N+SA+ ++ DKNI G
Sbjct: 148 TPWLILQSDFAIRHASSDVVVCMRYQAKFLITDSIGILYRNVSAVSAAVDKNI----GLG 203
Query: 54 IVKMDLSYVYTF 65
+ K+ L YVY F
Sbjct: 204 VTKIGLDYVYKF 215
>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
Length = 396
Score = 22.7 bits (47), Expect = 1.3, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 10 DFGVVLIGDKAFNTYRSQLR 29
+FGV LI D YR ++R
Sbjct: 339 EFGVYLISDGGNKPYRCKIR 358
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 20.4 bits (41), Expect = 5.5, Method: Composition-based stats.
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 6 KLQRDFGVVL 15
KLQ DFG++L
Sbjct: 287 KLQSDFGIIL 296
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 20.4 bits (41), Expect = 6.4, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 31 LITDNLSALISSDKNITESGKEGIVK 56
+IT +L+ LIS+ + K+GI+K
Sbjct: 206 MITHDLNNLISTCNRVAVIQKKGIMK 231
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,907
Number of Sequences: 1233
Number of extensions: 1210
Number of successful extensions: 7
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 328,796
effective HSP length: 36
effective length of query: 29
effective length of database: 284,408
effective search space: 8247832
effective search space used: 8247832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)