Query gi|254781155|ref|YP_003065568.1| hypothetical protein CLIBASIA_05310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 33803
Date Wed Jun 1 22:25:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781155.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2crn_A Ubash3A protein; compa 31.5 35 0.001 16.9 2.5 26 1-26 19-47 (64)
2 >1whc_A RSGI RUH-027, UBA/UBX 24.8 54 0.0016 16.0 2.5 26 1-26 19-47 (64)
3 >2cpw_A CBL-interacting protei 18.7 62 0.0018 15.7 1.8 25 1-25 29-56 (64)
4 >3eh2_A Protein transport prot 18.6 70 0.0021 15.5 2.0 18 14-31 121-138 (143)
5 >3ihp_A Ubiquitin carboxyl-ter 17.8 68 0.002 15.5 1.8 26 1-26 26-54 (70)
6 >2v1x_A ATP-dependent DNA heli 17.6 77 0.0023 15.3 2.0 30 1-30 40-83 (235)
7 >1vek_A UBP14, ubiquitin-speci 12.9 1.1E+02 0.0032 14.5 1.7 25 1-25 39-66 (84)
8 >2dag_A Ubiquitin carboxyl-ter 12.8 1.1E+02 0.0033 14.5 1.8 26 1-26 19-47 (74)
9 >2i5e_A Hypothetical protein M 11.9 53 0.0016 16.1 -0.1 17 13-29 12-28 (41)
10 >3iuy_A Probable ATP-dependent 10.3 1.6E+02 0.0046 13.8 2.4 30 1-30 38-81 (228)
No 1
>>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=31.49 E-value=35 Score=16.88 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHCCC---HHHHHHHH
Q ss_conf 976640356667642543---26999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGGR---KTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg~---~~t~wlvh 26 (35)
|||-+-.-.+--++-|.. ++++||.-
T Consensus 19 MGF~~~~a~kAL~~t~n~~ve~A~~Wl~~ 47 (64)
T 2crn_A 19 MGFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp TSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 36738999999998551109999999997
No 2
>>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} (A:)
Probab=24.77 E-value=54 Score=15.99 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHCCC---HHHHHHHH
Q ss_conf 976640356667642543---26999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGGR---KTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg~---~~t~wlvh 26 (35)
|||-+..-.+--++-|.. ++++||.-
T Consensus 19 MGF~~~~a~kAL~~t~n~~ve~A~~Wl~~ 47 (64)
T 1whc_A 19 MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59999999999999769999999999998
No 3
>>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=18.71 E-value=62 Score=15.69 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHH
Q ss_conf 97664035666764254---32699999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLV 25 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlv 25 (35)
|||-+..--+--++.++ -++++||.
T Consensus 29 MGF~~~~a~kAL~~t~n~~ve~A~~Wll 56 (64)
T 2cpw_A 29 MGFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6998999999999975999999999999
No 4
>>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} (A:511-620,A:734-766)
Probab=18.61 E-value=70 Score=15.47 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=13.1
Q ss_pred HHCCCHHHHHHHHHHHHH
Q ss_conf 425432699999999976
Q gi|254781155|r 14 AQGGRKTTAWLVHIFKKN 31 (35)
Q Consensus 14 a~gg~~~t~wlvhifk~n 31 (35)
.-|+---+||||||-+.-
T Consensus 121 ~~~~~sy~~~l~~~h~~~ 138 (143)
T 3eh2_A 121 LSGGASYVDFLCHMHKEI 138 (143)
T ss_dssp TTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 899979999999999999
No 5
>>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:637-706)
Probab=17.78 E-value=68 Score=15.53 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHCCC---HHHHHHHH
Q ss_conf 976640356667642543---26999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGGR---KTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg~---~~t~wlvh 26 (35)
|||-+-.-.+--.+.|+. ++++||.-
T Consensus 26 MGF~~~~a~kAL~~t~n~~ve~A~~Wl~~ 54 (70)
T 3ihp_A 26 MGFPMDACRKAVYYTGNSGAEAAMNWVMS 54 (70)
T ss_dssp HTCCHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 38887875666652267666665303332
No 6
>>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:1-235)
Probab=17.63 E-value=77 Score=15.25 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHH---H-----------HHCCCHHHHHHHHHHHH
Q ss_conf 976640356667---6-----------42543269999999997
Q gi|254781155|r 1 MGFKKPYQNQIE---H-----------AQGGRKTTAWLVHIFKK 30 (35)
Q Consensus 1 ~gfkkp~q~qi~---~-----------a~gg~~~t~wlvhifk~ 30 (35)
.||++|+..|.+ . .-|.|||.+++.-++.+
T Consensus 40 ~g~~~~~~~Q~~ai~~i~~g~dviv~apTGsGKT~~~~~~~~~~ 83 (235)
T 2v1x_A 40 FKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS 83 (235)
T ss_dssp SCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 69999898999999999809988998289756999999999968
No 7
>>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=12.86 E-value=1.1e+02 Score=14.52 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHH
Q ss_conf 97664035666764254---32699999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLV 25 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlv 25 (35)
|||-+-.-.+--++-|+ -++++||.
T Consensus 39 MGF~~~~a~kAL~~t~n~~ve~A~~Wll 66 (84)
T 1vek_A 39 MGFSQLHCQKAAINTSNAGVEEAMNWLL 66 (84)
T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 5999999999999986999999999999
No 8
>>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=12.76 E-value=1.1e+02 Score=14.46 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHHH
Q ss_conf 97664035666764254---326999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlvh 26 (35)
|||-+..-.+--++.|+ -.+++||.-
T Consensus 19 MGF~~~~a~kAL~~t~n~~~e~A~~Wl~~ 47 (74)
T 2dag_A 19 MGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59999999999999769999999999998
No 9
>>2i5e_A Hypothetical protein MM_2497; APC86122, hypothetic protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei GO1} (A:171-211)
Probab=11.90 E-value=53 Score=16.05 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=14.2
Q ss_pred HHHCCCHHHHHHHHHHH
Q ss_conf 64254326999999999
Q gi|254781155|r 13 HAQGGRKTTAWLVHIFK 29 (35)
Q Consensus 13 ~a~gg~~~t~wlvhifk 29 (35)
.-||-|.+.+||-+.|.
T Consensus 12 liHG~G~a~~~l~~gf~ 28 (41)
T 2i5e_A 12 LIHGKGAAKDYIESKFR 28 (41)
T ss_dssp HHHCCSHHHHHHHTTEE
T ss_pred HHHCCCHHHHHHHHCCC
T ss_conf 98478578999995177
No 10
>>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} (A:)
Probab=10.31 E-value=1.6e+02 Score=13.75 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHH--------------HHCCCHHHHHHHHHHHH
Q ss_conf 9766403566676--------------42543269999999997
Q gi|254781155|r 1 MGFKKPYQNQIEH--------------AQGGRKTTAWLVHIFKK 30 (35)
Q Consensus 1 ~gfkkp~q~qi~~--------------a~gg~~~t~wlvhifk~ 30 (35)
+||++|..-|-.- -.|-|||.+.++-++-.
T Consensus 38 ~g~~~Pt~IQ~~~ip~il~g~dvi~~A~TGSGKT~af~ip~l~~ 81 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH 81 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 79999999999999999779988998889998650147778998
Done!