Query gi|254781155|ref|YP_003065568.1| hypothetical protein CLIBASIA_05310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 35
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 23785
Date Wed Jun 1 01:12:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781155.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z0m_A 337AA long hypothetical 20.3 56 0.0024 15.2 3.1 30 1-30 12-55 (337)
2 1whc_A RSGI RUH-027, UBA/UBX 3 17.5 66 0.0028 14.8 2.5 26 1-26 19-47 (64)
3 2cpw_A CBL-interacting protein 16.3 54 0.0023 15.2 1.8 25 1-25 29-56 (64)
4 3if4_A Integron cassette prote 7.4 1.5E+02 0.0063 13.1 1.6 12 20-31 76-87 (119)
5 1vek_A UBP14, ubiquitin-specif 7.3 1.5E+02 0.0063 13.1 1.9 26 1-26 39-67 (84)
6 3fmo_B ATP-dependent RNA helic 7.3 1.5E+02 0.0063 13.1 3.1 30 1-30 110-155 (300)
7 2p09_A A non-biological ATP bi 5.9 1.6E+02 0.0066 13.0 1.1 19 12-30 4-22 (81)
8 1vec_A ATP-dependent RNA helic 5.8 1.8E+02 0.0077 12.7 1.9 30 1-30 21-64 (206)
9 2dag_A Ubiquitin carboxyl-term 5.5 1.9E+02 0.0081 12.6 1.8 26 1-26 19-47 (74)
10 2k37_A Chlorosome protein A; b 5.3 2E+02 0.0083 12.5 1.4 13 15-27 2-14 (59)
No 1
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.27 E-value=56 Score=15.17 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHH---HH-----------HCCCHHHHHHHHHHHH
Q ss_conf 976640356667---64-----------2543269999999997
Q gi|254781155|r 1 MGFKKPYQNQIE---HA-----------QGGRKTTAWLVHIFKK 30 (35)
Q Consensus 1 ~gfkkp~q~qi~---~a-----------~gg~~~t~wlvhifk~ 30 (35)
|||.+|..-|.+ .. .|.|||.++++-+.+.
T Consensus 12 ~g~~~~~p~Q~~ai~~~l~g~dviv~apTGsGKT~~~~lp~l~~ 55 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 79999999999999999849989998999956999999999985
No 2
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=17.48 E-value=66 Score=14.84 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHCCC---HHHHHHHH
Q ss_conf 976640356667642543---26999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGGR---KTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg~---~~t~wlvh 26 (35)
|||-+-.-.+--++-+.. .+.+||.-
T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~ 47 (64)
T 1whc_A 19 MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59999999999999479999999999998
No 3
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=16.27 E-value=54 Score=15.24 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHH
Q ss_conf 97664035666764254---32699999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLV 25 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlv 25 (35)
|||....-..--.+-++ -.+.+||.
T Consensus 29 MGF~~~~a~~AL~~t~n~~ve~A~~Wll 56 (64)
T 2cpw_A 29 MGFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6998999999999965999999999999
No 4
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=7.37 E-value=1.5e+02 Score=13.12 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 699999999976
Q gi|254781155|r 20 TTAWLVHIFKKN 31 (35)
Q Consensus 20 ~t~wlvhifk~n 31 (35)
-.+|+-|||+-.
T Consensus 76 ys~W~~qI~~aA 87 (119)
T 3if4_A 76 YAQWLQQIFAAA 87 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 5
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=7.33 E-value=1.5e+02 Score=13.10 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHHH
Q ss_conf 97664035666764254---326999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlvh 26 (35)
|||-+..-.+--++.+. -+++.||..
T Consensus 39 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~ 67 (84)
T 1vek_A 39 MGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59999999999999869999999999998
No 6
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 2.51A {Homo sapiens}
Probab=7.30 E-value=1.5e+02 Score=13.09 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHH---H-------------HHCCCHHHHHHHHHHHH
Q ss_conf 976640356667---6-------------42543269999999997
Q gi|254781155|r 1 MGFKKPYQNQIE---H-------------AQGGRKTTAWLVHIFKK 30 (35)
Q Consensus 1 ~gfkkp~q~qi~---~-------------a~gg~~~t~wlvhifk~ 30 (35)
+||++|..-|.+ . ..|.|||.++++-|..+
T Consensus 110 ~g~~~pt~iQ~~aIp~il~~~g~dviv~a~TGSGKTlaf~lpi~~~ 155 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCHHHC
T ss_conf 7999999999999999983689729998689982788862201212
No 7
>2p09_A A non-biological ATP binding protein with two mutations N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=5.93 E-value=1.6e+02 Score=12.99 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=13.6
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q ss_conf 7642543269999999997
Q gi|254781155|r 12 EHAQGGRKTTAWLVHIFKK 30 (35)
Q Consensus 12 ~~a~gg~~~t~wlvhifk~ 30 (35)
.|.....+.|.||-.||.-
T Consensus 4 dykddddkktnwlkri~rv 22 (81)
T 2p09_A 4 DYKDDDDKKTNWLKRIYRV 22 (81)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC
T ss_conf 5445510462799888400
No 8
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=5.80 E-value=1.8e+02 Score=12.67 Aligned_cols=30 Identities=33% Similarity=0.601 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHH--------------HHHCCCHHHHHHHHHHHH
Q ss_conf 976640356667--------------642543269999999997
Q gi|254781155|r 1 MGFKKPYQNQIE--------------HAQGGRKTTAWLVHIFKK 30 (35)
Q Consensus 1 ~gfkkp~q~qi~--------------~a~gg~~~t~wlvhifk~ 30 (35)
+||+.|..-|-+ --.|.|||.++++-+..+
T Consensus 21 ~g~~~pt~iQ~~aip~il~G~dvi~~a~tGsGKTlayllp~l~~ 64 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHH
T ss_conf 79999999999999999879988999307998401564342430
No 9
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.49 E-value=1.9e+02 Score=12.57 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHHH
Q ss_conf 97664035666764254---326999999
Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLVH 26 (35)
Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlvh 26 (35)
|||-+-.-..--++-+. -.+++||..
T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~ 47 (74)
T 2dag_A 19 MGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 69999999999999869999999999998
No 10
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=5.32 E-value=2e+02 Score=12.51 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=9.8
Q ss_pred HCCCHHHHHHHHH
Q ss_conf 2543269999999
Q gi|254781155|r 15 QGGRKTTAWLVHI 27 (35)
Q Consensus 15 ~gg~~~t~wlvhi 27 (35)
.||++-|+|++-+
T Consensus 2 ~ggGaft~~a~a~ 14 (59)
T 2k37_A 2 SGGGVFTDILAAA 14 (59)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 9750567999972
Done!