Query gi|254781156|ref|YP_003065569.1| hypothetical protein CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 154
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 05:22:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781156.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02005 PTS-IIBC-alpha PTS s 78.2 0.96 2.4E-05 24.2 1.1 29 4-32 263-293 (533)
2 TIGR02810 agaZ_gatZ D-tagatose 35.8 29 0.00074 16.1 2.3 19 135-153 197-215 (430)
3 COG4573 GatZ Predicted tagatos 34.6 31 0.00079 15.9 2.3 20 135-154 191-210 (426)
4 TIGR01472 gmd GDP-mannose 4,6- 27.0 20 0.00051 16.9 0.3 75 10-95 14-104 (365)
5 TIGR00033 aroC chorismate synt 26.1 22 0.00056 16.7 0.3 18 118-135 98-115 (391)
6 pfam08013 Tagatose_6_P_K Tagat 20.5 70 0.0018 14.0 2.8 26 128-153 176-209 (424)
7 PRK04406 hypothetical protein; 16.4 66 0.0017 14.1 1.1 16 99-114 60-75 (75)
8 pfam07829 Toxin_14 Alpha-A con 14.1 54 0.0014 14.6 0.1 13 29-41 1-13 (26)
9 PRK02119 hypothetical protein; 12.7 99 0.0025 13.1 1.2 10 105-114 64-73 (73)
10 PRK02793 hypothetical protein; 12.4 1E+02 0.0026 13.1 1.1 19 96-114 54-72 (72)
No 1
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component; InterPro: IPR010975 This entry represents the fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterised as a maltose transporter, while genes from Fusobacterium and Klebsiella , have been proposed to transport the five non-standard isomers of sucrose.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=78.23 E-value=0.96 Score=24.25 Aligned_cols=29 Identities=41% Similarity=0.809 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHCCEECCCCC--CCCHH
Q ss_conf 021001367888652780003776--31004
Q gi|254781156|r 4 NLLTSTSSLMFFFLSSGYALSGSS--FGCCG 32 (154)
Q Consensus 4 nlltstsslmffflssgyalsgss--fgccg 32 (154)
|.-+||.+|-=.|=.-|+||.|+| |||.|
T Consensus 263 ~FA~Sa~pLK~lFP~GGFaLhGnsKvFGc~G 293 (533)
T TIGR02005 263 EFAKSAKPLKELFPEGGFALHGNSKVFGCVG 293 (533)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHH
T ss_conf 8876300367647887616407850236789
No 2
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=35.85 E-value=29 Score=16.07 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHC
Q ss_conf 9757777789999998731
Q gi|254781156|r 135 PHPDHIRNTLALHRKMLEQ 153 (154)
Q Consensus 135 phpdhirntlalhrkmleq 153 (154)
.+|+-+|+||..||+-.++
T Consensus 197 T~PeaA~~Tl~~HR~AF~~ 215 (430)
T TIGR02810 197 TTPEAARETLEAHRKAFAA 215 (430)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8888899999999999987
No 3
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=34.64 E-value=31 Score=15.90 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 97577777899999987319
Q gi|254781156|r 135 PHPDHIRNTLALHRKMLEQS 154 (154)
Q Consensus 135 phpdhirntlalhrkmleqs 154 (154)
.+|+-.||||..||+..+++
T Consensus 191 T~peaa~~Tl~~Hr~aF~~~ 210 (426)
T COG4573 191 TTPEAARNTLRAHRKAFEAR 210 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHC
T ss_conf 88567999999999999972
No 4
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=26.98 E-value=20 Score=16.94 Aligned_cols=75 Identities=35% Similarity=0.428 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCEECCC-----CCCCCHH------HHHHC-C--CCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCHHHHH
Q ss_conf 3678886527800037-----7631004------44310-2--6872364014456876431011004888787666620
Q gi|254781156|r 10 SSLMFFFLSSGYALSG-----SSFGCCG------EFKKK-A--SSPRIHMRPFTKSSPYNNSVSNTVNNTPRVPDVSEMN 75 (154)
Q Consensus 10 sslmffflssgyalsg-----ssfgccg------efkkk-a--ssprihmrpftksspynnsvsntvnntprvpdvsemn 75 (154)
|-|-=|.|..||..-| |||-.-- |-.+. . ..-.+|---.|.|+-.+.-+..+- |+ |
T Consensus 14 SYLAE~LL~~GYeVHG~~RRSSSfNT~Ri~hiY~~~h~~~~r~A~~fLHYGDlTDs~~L~~~i~~~k------P~--E-- 83 (365)
T TIGR01472 14 SYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHKEEKRRALMFLHYGDLTDSSNLVKLIDEIK------PT--E-- 83 (365)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC------CC--E--
T ss_conf 8999998726968764586255425224567640535410166135420442106899999974048------86--3--
Q ss_pred CCCCCCCCCCEECCC--CCCCC
Q ss_conf 012668600010378--42000
Q gi|254781156|r 76 SSRGSAPQSHVNVSS--PHYKH 95 (154)
Q Consensus 76 ssrgsapqshvnvss--phykh 95 (154)
----|.||||.||= |.|.-
T Consensus 84 -iYNLAAQSHV~VSFe~PeYTa 104 (365)
T TIGR01472 84 -IYNLAAQSHVKVSFEIPEYTA 104 (365)
T ss_pred -EECCCCCCCEEEECCCCCCHH
T ss_conf -420202371035416520000
No 5
>TIGR00033 aroC chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows , a high degree of sequence conservation. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=26.11 E-value=22 Score=16.75 Aligned_cols=18 Identities=39% Similarity=0.687 Sum_probs=14.3
Q ss_pred HHHHHHCCCCCCCCCCCC
Q ss_conf 222220368968877789
Q gi|254781156|r 118 HISRTRIDSSPPPGHIDP 135 (154)
Q Consensus 118 hisrtridsspppghidp 135 (154)
...|.|+++.|-|||.|-
T Consensus 98 ~~~~~~~~~~pRPGHaDy 115 (391)
T TIGR00033 98 LLKRKAIRTVPRPGHADY 115 (391)
T ss_pred HHHHHHHHCCCCCCHHHH
T ss_conf 986521221677862677
No 6
>pfam08013 Tagatose_6_P_K Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases.
Probab=20.46 E-value=70 Score=13.96 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=19.2
Q ss_pred CCCCCCC--------CCHHHHHHHHHHHHHHHHC
Q ss_conf 6887778--------9757777789999998731
Q gi|254781156|r 128 PPPGHID--------PHPDHIRNTLALHRKMLEQ 153 (154)
Q Consensus 128 pppghid--------phpdhirntlalhrkmleq 153 (154)
|+||--+ ..|+.+++||+.||+-.++
T Consensus 176 PvPGGa~e~~~~l~vT~~~~a~~Tl~~hr~aF~~ 209 (424)
T pfam08013 176 PVPGGAAEELEELQVTTPEAARATLEAHRQAFAA 209 (424)
T ss_pred CCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999520013577789999999999999999997
No 7
>PRK04406 hypothetical protein; Provisional
Probab=16.42 E-value=66 Score=14.11 Aligned_cols=16 Identities=38% Similarity=0.914 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCHH
Q ss_conf 4434444557988602
Q gi|254781156|r 99 SSSASSSTHASPPPHF 114 (154)
Q Consensus 99 sssasssthasppphf 114 (154)
+|...+...-.||||+
T Consensus 60 ~s~~a~~~eEtPPPHY 75 (75)
T PRK04406 60 SSNMADPSEETPPPHY 75 (75)
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 5578984558973787
No 8
>pfam07829 Toxin_14 Alpha-A conotoxin PIVA-like protein. Alpha-A conotoxin PIVA is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine binding site of the nicotinic acetylcholine receptor at the neuromuscular junction. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor.
Probab=14.12 E-value=54 Score=14.60 Aligned_cols=13 Identities=46% Similarity=1.336 Sum_probs=9.0
Q ss_pred CCHHHHHHCCCCC
Q ss_conf 1004443102687
Q gi|254781156|r 29 GCCGEFKKKASSP 41 (154)
Q Consensus 29 gccgefkkkassp 41 (154)
||||.+-..|-.|
T Consensus 1 gccg~ypnaachp 13 (26)
T pfam07829 1 GCCGKYPNAACHP 13 (26)
T ss_pred CCCCCCCCCCCCC
T ss_conf 9656678744245
No 9
>PRK02119 hypothetical protein; Provisional
Probab=12.66 E-value=99 Score=13.12 Aligned_cols=10 Identities=40% Similarity=1.218 Sum_probs=5.8
Q ss_pred CCCCCCCCHH
Q ss_conf 4557988602
Q gi|254781156|r 105 STHASPPPHF 114 (154)
Q Consensus 105 sthasppphf 114 (154)
...-.||||+
T Consensus 64 ~~eE~PPPHY 73 (73)
T PRK02119 64 QAEETPPPHY 73 (73)
T ss_pred CCCCCCCCCC
T ss_conf 7779884787
No 10
>PRK02793 hypothetical protein; Provisional
Probab=12.42 E-value=1e+02 Score=13.07 Aligned_cols=19 Identities=32% Similarity=0.718 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCHH
Q ss_conf 1244434444557988602
Q gi|254781156|r 96 EYSSSSASSSTHASPPPHF 114 (154)
Q Consensus 96 eyssssasssthasppphf 114 (154)
+-.+|...+...-.||||+
T Consensus 54 ~~~~s~~a~~~eE~PPPHY 72 (72)
T PRK02793 54 ASQPSNIASQAEETPPPHY 72 (72)
T ss_pred HCCCCCCCCCCCCCCCCCC
T ss_conf 5287778984558984787
Done!