RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781156|ref|YP_003065569.1| hypothetical protein
CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside
           deacetylase (MSHB); rossmann fold, zinc aminohydrolase;
           HET: PE4; 1.70A {Mycobacterium tuberculosis} (A:)
          Length = 303

 Score = 26.0 bits (56), Expect = 2.2
 Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 2/34 (5%)

Query: 117 KHISRTRIDS--SPPPGHIDPHPDHIRNTLALHR 148
             I   R     +  P     HPDH+        
Sbjct: 123 AIIRELRPHVVVTYDPNGGYGHPDHVHTHTVTTA 156


>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain,
           hydrolase; 2.10A {} (A:)
          Length = 270

 Score = 26.0 bits (56), Expect = 2.3
 Identities = 7/32 (21%), Positives = 8/32 (25%)

Query: 117 KHISRTRIDSSPPPGHIDPHPDHIRNTLALHR 148
             I+            I  HPDH     A   
Sbjct: 139 SMIAECDPTLVLTCVAIGKHPDHKATRDATLL 170


>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2;
           lipoglycopeptide, zinc dependent, hydrolase; HET: MSE
           PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 3dfk_A*
           3dfm_A (A:)
          Length = 273

 Score = 26.0 bits (56), Expect = 2.6
 Identities = 6/24 (25%), Positives = 6/24 (25%)

Query: 117 KHISRTRIDSSPPPGHIDPHPDHI 140
             I             I  HPDH 
Sbjct: 142 SIIDEFDPTLVVTCAAIGEHPDHE 165


>1y2i_A Hypothetical protein S0862; structural genomics, pentamer,
           protein structure initiative, PSI, midwest center for
           structural genomics; 2.30A {Shigella flexneri 2a str}
           (A:)
          Length = 133

 Score = 25.9 bits (57), Expect = 2.8
 Identities = 5/31 (16%), Positives = 7/31 (22%), Gaps = 3/31 (9%)

Query: 113 HFEQKHISRTRIDSSPPPGHIDPHPDHIRNT 143
           H    H S   +D                +T
Sbjct: 2   HHHHHHSS--GVDLGTEN-LYFQSNAXQFST 29


>1uan_A Hypothetical protein TT1542; rossmann-like, structural
           genomics, riken structural genomics/proteomics
           initiative, RSGI, unknown function; 2.00A {Thermus
           thermophilus} (A:)
          Length = 227

 Score = 25.5 bits (55), Expect = 4.0
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 116 QKHISRTRIDSSPPPGHIDPHPDHIRNTLA 145
            + + R R      P   D HPDH   +  
Sbjct: 88  AQALRRLRPRVVFAPLEADRHPDHTAASRL 117


>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold,
           zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus
           cereus} (A:)
          Length = 242

 Score = 25.1 bits (54), Expect = 4.2
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 117 KHISRTRIDSSPPPGHIDPHPDHIRNTLALHR 148
           K I   +      P + D HPDH      +  
Sbjct: 91  KVIRTYKPKLVFAPYYEDRHPDHANCAKLVEE 122


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.311    0.124    0.365 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,144,628
Number of extensions: 45729
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 47
Length of query: 154
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 73
Effective length of database: 2,217,844
Effective search space: 161902612
Effective search space used: 161902612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)