BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781156|ref|YP_003065569.1| hypothetical protein
CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781156|ref|YP_003065569.1| hypothetical protein CLIBASIA_05315 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 154

 Score =  310 bits (794), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MRKNLLTSTSSLMFFFLSSGYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSN 60
           MRKNLLTSTSSLMFFFLSSGYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSN
Sbjct: 1   MRKNLLTSTSSLMFFFLSSGYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSN 60

Query: 61  TVNNTPRVPDVSEMNSSRGSAPQSHVNVSSPHYKHEYSSSSASSSTHASPPPHFEQKHIS 120
           TVNNTPRVPDVSEMNSSRGSAPQSHVNVSSPHYKHEYSSSSASSSTHASPPPHFEQKHIS
Sbjct: 61  TVNNTPRVPDVSEMNSSRGSAPQSHVNVSSPHYKHEYSSSSASSSTHASPPPHFEQKHIS 120

Query: 121 RTRIDSSPPPGHIDPHPDHIRNTLALHRKMLEQS 154
           RTRIDSSPPPGHIDPHPDHIRNTLALHRKMLEQS
Sbjct: 121 RTRIDSSPPPGHIDPHPDHIRNTLALHRKMLEQS 154


>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 22.3 bits (46), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 38  ASSPRIHMRPFTKSSPYNN 56
           ASS   H+ PF +  PY N
Sbjct: 347 ASSNAKHLVPFAEYLPYRN 365


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.311    0.124    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,069
Number of Sequences: 1233
Number of extensions: 3471
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 328,796
effective HSP length: 67
effective length of query: 87
effective length of database: 246,185
effective search space: 21418095
effective search space used: 21418095
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 35 (18.1 bits)