RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781157|ref|YP_003065570.1| hypothetical protein CLIBASIA_05320 [Candidatus Liberibacter asiaticus str. psy62] (85 letters) >gnl|CDD|177054 CHL00132, psaF, photosystem I subunit III; Validated. Length = 185 Score = 24.6 bits (54), Expect = 5.9 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Query: 1 MSKFVVRIMFLLSAISSNPILAANEHS-------SVSEQKRKETTV 39 M KF + + L + + NPI A + + S + QKR +V Sbjct: 1 MKKFNLLFLLLAALLLFNPIAAFADVAGLTPCSESPAFQKRLNNSV 46 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.130 0.365 Gapped Lambda K H 0.267 0.0551 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 916,029 Number of extensions: 34412 Number of successful extensions: 60 Number of sequences better than 10.0: 1 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 2 Length of query: 85 Length of database: 6,263,737 Length adjustment: 54 Effective length of query: 31 Effective length of database: 5,096,851 Effective search space: 158002381 Effective search space used: 158002381 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.8 bits)