RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781157|ref|YP_003065570.1| hypothetical protein
CLIBASIA_05320 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>gnl|CDD|177054 CHL00132, psaF, photosystem I subunit III; Validated.
          Length = 185

 Score = 24.6 bits (54), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 1  MSKFVVRIMFLLSAISSNPILAANEHS-------SVSEQKRKETTV 39
          M KF +  + L + +  NPI A  + +       S + QKR   +V
Sbjct: 1  MKKFNLLFLLLAALLLFNPIAAFADVAGLTPCSESPAFQKRLNNSV 46


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 916,029
Number of extensions: 34412
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 85
Length of database: 6,263,737
Length adjustment: 54
Effective length of query: 31
Effective length of database: 5,096,851
Effective search space: 158002381
Effective search space used: 158002381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)