RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781157|ref|YP_003065570.1| hypothetical protein
CLIBASIA_05320 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr;
           Provisional.
          Length = 1490

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 16  SSNPILAANEHSSVSEQKRKET 37
           SS+  +A + H SVS+++R  T
Sbjct: 298 SSDVFIARSHHGSVSKEQRAIT 319


>gnl|CDD|184974 PRK15012, PRK15012, menaquinone-specific isochorismate synthase;
           Provisional.
          Length = 431

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 26  HSSVSEQKRKETTVGFISRLVNKRPVANKRCPNATKQTPPD 66
            S  S Q        F++ LV+ +P+         +Q  PD
Sbjct: 128 FSESSLQHDAIQAKEFLATLVSIKPLPGLHLTTTREQHWPD 168


>gnl|CDD|177467 PHA02685, PHA02685, ORF065 virion protein; Provisional.
          Length = 155

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 59  ATKQTPPDHGSKYDTRE 75
           A ++ PPD GS  D RE
Sbjct: 102 AAREPPPDDGSPIDARE 118


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,246,531
Number of extensions: 57420
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 6
Length of query: 85
Length of database: 5,994,473
Length adjustment: 54
Effective length of query: 31
Effective length of database: 4,827,641
Effective search space: 149656871
Effective search space used: 149656871
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)