HHsearch alignment for GI: 254781158 and conserved domain: PRK10770
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional.
Probab=100.00 E-value=2.4e-41 Score=287.92 Aligned_cols=249 Identities=19% Similarity=0.212 Sum_probs=206.7
Q ss_pred CCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 88428999987848999999999999999987088999789986013899999999999999999984982488999999
Q gi|254781158|r 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 (631)
Q Consensus 39 ~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~ 118 (631)
T Consensus 25 iD~IvAvVn~~iIl~sdl~~~~~~~~~~~~~~-~~~~p~~~----~Lr~qvLd~LI~e~Ll~Q~A~~~gi~Vsd~evd~~ 99 (428)
T PRK10770 25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAQQA-GQQLPDDA----TLRHQILERLIMDQIILQMGQKMGVKISDEQLDQA 99 (428)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 38279999990544999999999999999855-89999668----99999999999999999999983998699999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 96347655421023989999999861100567767888775444555430145422002223345543211123332100
Q gi|254781158|r 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 (631)
Q Consensus 119 i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~ 198 (631)
T Consensus 100 i~~ia----~~~~~s~~q~~~~L~~~G~s~~~~r~~ir~ell~~~l~~~~------------------------------ 145 (428)
T PRK10770 100 IANIA----KQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNE------------------------------ 145 (428)
T ss_pred HHHHH----HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_conf 99999----87488799999999976997899999999999999999998------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00123456789889999976566655545443322221100000001257889998755554555433211237887530
Q gi|254781158|r 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 (631)
Q Consensus 199 ~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~ 278 (631)
T Consensus 146 ---v~~~i~Vs~~Ev~~~~~~~~~~~~~~~e~~l~~Ili~~-----~~~~~~~~~~~----------------------- 194 (428)
T PRK10770 146 ---VRRRITILPQEVESLAKQIGNQNDASTELNLSHILIPL-----PENPTSDQVNE----------------------- 194 (428)
T ss_pred ---HHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-----CCCCCHHHHHH-----------------------
T ss_conf ---65010247899999999866422688617899999737-----88889999999-----------------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 0001478887530365147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
T Consensus 195 ~~~~a~~i~~~i~~G~dF~~lA~~~S~~~~a~~GGdlGw~~~~~lp-~~f~~a~~~l-~~Geis~pi~s~~G~HIikl~d 272 (428)
T PRK10770 195 AESQARSIVDQARNGADFGKLAIAYSADQQALKGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKVND 272 (428)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCH-HHHHHHHHHC-CCCCCCCCEECCCCEEEEEEHH
T ss_conf 9999999999987589989999982657101116864421122130-7899999716-8987235364178359997244
Q ss_pred CCCH
Q ss_conf 3301
Q gi|254781158|r 356 IKPS 359 (631)
Q Consensus 356 ~~~~ 359 (631)
T Consensus 273 ~r~~ 276 (428)
T PRK10770 273 LRGA 276 (428)
T ss_pred HHCC
T ss_conf 3256