HHsearch alignment for GI: 254781158 and conserved domain: TIGR02933
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=95.35 E-value=0.12 Score=28.63 Aligned_cols=242 Identities=16% Similarity=0.160 Sum_probs=135.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHH---HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 210239899999998611005677678887754445554-3014542200222334---554321112333210000123
Q gi|254781158|r 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQA---KRFYFENRSVDYIVLNNRHVP 203 (631)
Q Consensus 128 ~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~---~~~~~~~r~i~~~~~~~~~~~ 203 (631)
T Consensus 15 ~~~~L~~~~~~~~~~~~~----------RQ~~~E~Av~~~~~~~~~~i~p~~le~~Wahiasryes~~~L~~~L~~~--- 81 (270)
T TIGR02933 15 EPAELSPDQLQQFEQAWQ----------RQRHIEQAVVEAADESAVDIPPSLLEEVWAHIASRYESAQALAAELDEQ--- 81 (270)
T ss_pred CCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH---
T ss_conf 867889877899999998----------7789999999736522464788889999999873156778999871330---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4567898899999765666555454433222----21100000001-257889998755554555433211237887530
Q gi|254781158|r 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISY----ILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 (631)
Q Consensus 204 ~~~~~td~el~~yy~~nk~~f~~pe~~~i~y----v~~~~~~~~~~-~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~ 278 (631)
T Consensus 82 -------------------~l~A~~~~a~l~h~~~l~~~L~~v~~q~p~p~~a~V~~wY~~Ha~~F~rPeQrltrHLLlT 142 (270)
T TIGR02933 82 -------------------ELAAAEREALLAHHVRLEAQLASVAEQAPQPDDAEVEAWYRRHAEQFVRPEQRLTRHLLLT 142 (270)
T ss_pred -------------------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEE
T ss_conf -------------------4893017999999999999999997058999603588998886740577134422233201
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCC
Q ss_conf 00014788875303651478877520112365245316232267567776420236672256786177211211023330
Q gi|254781158|r 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~F~~la~~~~~~~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~ 358 (631)
T Consensus 143 v~-------------------------------------edfPen-----------~---------------------~- 152 (270)
T TIGR02933 143 VN-------------------------------------EDFPEN-----------D---------------------R- 152 (270)
T ss_pred CC-------------------------------------CCCCCC-----------C---------------------C-
T ss_conf 15-------------------------------------877988-----------8---------------------1-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 13445543223333456799998888865565776542011001245540853200134441123456543221111168
Q gi|254781158|r 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 (631)
Q Consensus 359 ~~~~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d~~~~g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (631)
T Consensus 153 ------eAv~~ri~al~rrL~----------------~~~~~FA~~A~rhS~-----CPtAl-~gG~LGWv~RG~LY-p~ 203 (270)
T TIGR02933 153 ------EAVRERILALLRRLR----------------AKRAAFAELAERHSH-----CPTAL-EGGLLGWVSRGLLY-PQ 203 (270)
T ss_pred ------HHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHCC-----CCCHH-CCCCEEEECCCCCC-HH
T ss_conf ------789999999998746----------------885678999876277-----86202-27820443077666-00
Q ss_pred HHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887531123467765111369749999980232233466788899999999999999999999
Q gi|254781158|r 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 (631)
Q Consensus 439 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~ 502 (631)
T Consensus 204 Ld~aLF~L~~G-~LS~~~es~lGwHl-L~CE~irp~~pl~~~~aL~~~rd~L~~r~q~~~QRqW 265 (270)
T TIGR02933 204 LDAALFQLAEG-ELSAPIESELGWHL-LLCEAIRPARPLEKEEALERARDRLLLRQQKEYQRQW 265 (270)
T ss_pred HHHHHHHHHCC-CCCCCHHCHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999998606-88860111014677-8753048656789878989999999999988867799