Query gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 631
No_of_seqs 167 out of 2728
Neff 8.8
Searched_HMMs 39220
Date Mon May 30 07:25:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781158.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10788 peptidyl-prolyl cis-t 100.0 0 0 807.2 50.8 602 1-624 1-622 (622)
2 PRK00059 prsA peptidylprolyl i 100.0 0 0 418.1 25.4 314 5-394 1-325 (336)
3 PRK10770 peptidyl-prolyl cis-t 100.0 2.4E-41 0 287.9 34.0 249 39-359 25-276 (428)
4 PRK04405 prsA peptidylprolyl i 100.0 4.5E-34 1.2E-38 240.4 19.6 228 38-382 26-260 (298)
5 PRK03002 prsA peptidylprolyl i 100.0 1.1E-33 2.7E-38 238.0 21.0 234 21-383 12-250 (285)
6 PRK03095 prsA peptidylprolyl i 100.0 2E-33 5E-38 236.3 20.1 231 37-391 21-257 (287)
7 PRK02998 prsA peptidylprolyl i 100.0 6.3E-33 1.6E-37 233.0 20.6 221 40-385 25-250 (283)
8 PRK01326 prsA foldase protein 100.0 6.6E-30 1.7E-34 213.2 18.5 243 23-382 14-264 (310)
9 PRK12450 foldase protein PrsA; 100.0 1.9E-28 4.7E-33 203.7 19.3 243 24-383 17-268 (309)
10 PRK10788 peptidyl-prolyl cis-t 99.9 3.6E-21 9.3E-26 156.1 31.2 323 204-611 171-507 (622)
11 COG0760 SurA Parvulin-like pep 99.8 1.4E-19 3.7E-24 145.7 15.2 264 10-374 3-279 (320)
12 PRK10770 peptidyl-prolyl cis-t 99.8 6.1E-18 1.6E-22 135.0 20.9 123 268-393 283-419 (428)
13 TIGR02933 nifM_nitrog nitrogen 99.8 1.5E-18 3.8E-23 139.0 17.1 234 73-378 17-256 (270)
14 pfam09312 SurA_N SurA N-termin 99.6 9.5E-15 2.4E-19 114.2 14.6 116 41-165 3-118 (118)
15 TIGR02925 cis_trans_EpsD pepti 99.6 1E-13 2.6E-18 107.4 18.4 223 15-358 3-231 (236)
16 pfam00639 Rotamase PPIC-type P 99.4 6.7E-14 1.7E-18 108.6 3.0 75 279-355 16-95 (95)
17 KOG3258 consensus 99.2 4.6E-12 1.2E-16 96.6 1.4 87 268-356 38-132 (133)
18 KOG3259 consensus 99.1 2.5E-11 6.5E-16 91.8 1.0 86 266-353 51-161 (163)
19 PRK00059 prsA peptidylprolyl i 99.0 1.5E-08 3.9E-13 73.6 12.6 111 392-509 214-325 (336)
20 PRK03095 prsA peptidylprolyl i 98.7 4.9E-06 1.3E-10 57.2 16.4 122 503-628 146-275 (287)
21 PRK03002 prsA peptidylprolyl i 98.6 3E-06 7.7E-11 58.6 14.1 122 503-628 150-278 (285)
22 PRK04405 prsA peptidylprolyl i 98.5 4.7E-06 1.2E-10 57.4 13.2 125 503-628 158-289 (298)
23 PRK02998 prsA peptidylprolyl i 98.5 1.1E-05 2.7E-10 55.1 14.4 114 512-628 156-278 (283)
24 PRK01326 prsA foldase protein 98.4 8.2E-05 2.1E-09 49.2 16.4 125 502-627 158-292 (310)
25 PRK12450 foldase protein PrsA; 98.3 0.00012 3.1E-09 48.1 16.3 126 502-628 161-296 (309)
26 PRK01490 tig trigger factor; P 96.7 0.043 1.1E-06 31.5 12.2 22 50-71 18-39 (435)
27 pfam00639 Rotamase PPIC-type P 95.8 0.062 1.6E-06 30.4 7.7 77 498-577 15-94 (95)
28 TIGR02933 nifM_nitrog nitrogen 95.4 0.12 3E-06 28.6 7.6 242 128-502 15-265 (270)
29 pfam05698 Trigger_C Bacterial 95.3 0.19 4.9E-06 27.2 12.9 119 89-261 20-142 (162)
30 pfam05698 Trigger_C Bacterial 94.6 0.29 7.4E-06 26.1 13.2 110 50-168 40-160 (162)
31 PRK00315 potassium-transportin 93.8 0.13 3.4E-06 28.3 4.9 54 1-54 1-54 (195)
32 pfam02669 KdpC K+-transporting 86.6 1.5 3.7E-05 21.5 4.7 53 2-54 1-53 (188)
33 PRK09510 tolA cell envelope in 82.9 2.8 7.2E-05 19.6 9.3 23 8-30 11-33 (402)
34 COG0544 Tig FKBP-type peptidyl 80.3 3.5 8.8E-05 19.0 12.9 34 316-351 190-224 (441)
35 COG2156 KdpC K+-transporting A 72.4 5.6 0.00014 17.6 4.1 54 1-54 1-55 (190)
36 COG3064 TolA Membrane protein 71.2 6 0.00015 17.5 8.2 22 9-30 12-33 (387)
37 PRK03427 cell division protein 69.9 5.4 0.00014 17.8 3.3 27 1-32 1-27 (331)
38 TIGR02794 tolA_full protein To 64.0 6.6 0.00017 17.2 2.8 20 10-29 2-21 (452)
39 PTZ00183 centrin; Provisional 62.4 8.9 0.00023 16.3 4.5 44 98-143 48-91 (168)
40 TIGR01843 type_I_hlyD type I s 59.8 9.8 0.00025 16.1 3.0 20 11-30 4-23 (434)
41 TIGR03076 near_not_gcvH Chlamy 58.9 10 0.00026 15.9 29.9 137 3-139 2-163 (686)
42 TIGR02081 metW methionine bios 55.7 6.9 0.00018 17.1 1.7 49 106-156 48-108 (205)
43 PRK08343 secD preprotein trans 54.2 12 0.00031 15.5 7.1 66 2-68 1-76 (414)
44 PRK03598 hypothetical protein; 53.3 13 0.00032 15.4 3.7 21 11-31 3-23 (331)
45 pfam04011 LemA LemA family. Th 50.1 12 0.0003 15.6 2.1 21 13-33 2-22 (186)
46 PRK10893 hypothetical protein; 49.6 10 0.00026 16.0 1.7 21 9-30 4-24 (190)
47 PRK09793 methyl-accepting prot 45.2 14 0.00036 15.0 1.9 13 1-13 1-13 (533)
48 cd01324 cbb3_Oxidase_CcoQ Cyto 43.5 18 0.00045 14.4 2.9 26 3-29 5-30 (48)
49 TIGR03061 pip_yhgE_Nterm YhgE/ 43.1 18 0.00046 14.3 4.3 44 5-49 3-52 (164)
50 COG5126 FRQ1 Ca2+-binding prot 42.2 19 0.00047 14.3 4.7 46 94-142 37-82 (160)
51 PRK11091 aerobic respiration c 41.2 9.1 0.00023 16.3 0.4 30 112-141 154-188 (779)
52 PRK04335 cell division protein 39.6 20 0.00052 14.0 2.8 22 12-33 6-27 (319)
53 PRK09029 O-succinylbenzoic aci 39.6 20 0.00052 14.0 2.7 32 39-70 17-48 (458)
54 PRK11633 hypothetical protein; 39.5 20 0.00052 14.0 2.6 29 1-29 1-29 (218)
55 TIGR00313 cobQ cobyric acid sy 39.3 11 0.00029 15.7 0.7 136 143-303 35-176 (502)
56 COG3480 SdrC Predicted secrete 39.3 21 0.00053 14.0 3.4 42 7-49 4-48 (342)
57 pfam10726 DUF2518 Protein of f 39.0 21 0.00053 13.9 2.5 18 12-29 16-34 (145)
58 KOG0031 consensus 36.8 22 0.00057 13.7 4.2 32 91-122 46-77 (171)
59 PRK03147 thiol-disulfide oxido 36.6 23 0.00058 13.7 3.5 15 43-57 47-61 (176)
60 pfam09494 Slx4 Slx4 endonuclea 34.7 24 0.00062 13.5 3.1 15 245-259 204-218 (627)
61 COG3630 OadG Na+-transporting 33.9 25 0.00064 13.4 2.2 24 13-36 18-41 (84)
62 pfam06571 consensus 33.8 19 0.00049 14.1 1.1 28 119-147 4-31 (119)
63 COG3266 DamX Uncharacterized p 33.3 25 0.00065 13.4 2.4 50 6-55 3-53 (292)
64 pfam10001 DUF2242 Uncharacteri 33.3 26 0.00065 13.4 3.3 24 39-62 92-115 (121)
65 TIGR01923 menE O-succinylbenzo 33.0 26 0.00066 13.3 2.1 58 541-598 399-460 (490)
66 PRK10733 hflB ATP-dependent me 31.9 27 0.00069 13.2 4.9 42 9-62 2-43 (644)
67 pfam03264 Cytochrom_NNT NapC/N 31.7 25 0.00064 13.4 1.4 21 13-33 8-28 (174)
68 KOG3605 consensus 31.7 27 0.00069 13.2 2.7 22 592-613 589-610 (829)
69 pfam11286 DUF3087 Protein of u 30.9 28 0.00071 13.1 3.2 46 4-49 10-56 (165)
70 PHA00350 putative assembly pro 30.3 29 0.00073 13.0 2.1 45 178-222 89-133 (402)
71 TIGR02156 PA_CoA_Oxy1 phenylac 29.9 29 0.00074 13.0 3.2 70 306-391 110-186 (297)
72 pfam04585 consensus 29.8 29 0.00074 13.0 4.1 46 2-48 20-66 (218)
73 TIGR01511 ATPase-IB1_Cu copper 29.7 29 0.00075 13.0 3.0 12 347-358 150-161 (545)
74 COG5341 Uncharacterized protei 28.3 31 0.00079 12.8 1.9 39 14-52 13-51 (132)
75 pfam09636 XkdW XkdW protein. T 28.0 31 0.0008 12.8 2.1 21 204-224 39-59 (106)
76 TIGR02090 LEU1_arch isopropylm 27.5 32 0.00081 12.7 4.1 26 69-110 13-38 (371)
77 TIGR02146 LysS_fung_arch homoc 27.5 32 0.00081 12.7 3.3 21 464-484 219-240 (355)
78 PRK13836 conjugal transfer pro 27.1 32 0.00082 12.7 4.1 45 2-48 22-68 (220)
79 pfam09851 DUF2078 Predicted me 27.1 32 0.00083 12.7 4.1 11 16-26 13-23 (73)
80 TIGR02318 phosphono_phnM phosp 26.3 34 0.00085 12.6 3.2 55 109-163 145-214 (391)
81 pfam11116 DUF2624 Protein of u 25.3 35 0.00089 12.5 4.7 42 99-143 20-62 (84)
82 COG4902 Uncharacterized protei 24.2 37 0.00093 12.3 8.9 49 5-57 1-52 (189)
83 PRK01749 disulfide bond format 24.1 37 0.00094 12.3 3.2 29 1-29 1-29 (175)
84 PRK08455 fliL flagellar basal 24.0 19 0.00049 14.1 -0.3 11 109-119 110-120 (180)
85 PRK13872 conjugal transfer pro 23.3 38 0.00097 12.2 4.0 50 2-52 31-83 (228)
86 PRK10461 thiamine biosynthesis 23.2 38 0.00097 12.2 8.5 62 18-79 8-84 (351)
87 TIGR01649 hnRNP-L_PTB hnRNP-L/ 22.9 39 0.00099 12.2 1.7 14 470-483 510-523 (557)
88 TIGR02362 dhaK1b probable dihy 22.6 39 0.001 12.1 3.0 152 162-348 65-222 (328)
89 cd03008 TryX_like_RdCVF Trypar 22.3 40 0.001 12.1 2.4 42 212-260 46-87 (146)
90 TIGR02161 napC_nirT periplasmi 22.3 40 0.001 12.1 2.2 32 2-33 6-37 (185)
91 TIGR01166 cbiO cobalt ABC tran 21.8 26 0.00066 13.3 0.0 95 452-554 70-168 (190)
92 COG3197 FixS Uncharacterized p 21.4 41 0.0011 12.0 2.7 21 13-33 9-29 (58)
93 KOG0144 consensus 20.6 43 0.0011 11.9 0.9 48 245-292 133-187 (510)
94 pfam04917 Shufflon_N Bacterial 20.3 44 0.0011 11.8 1.9 25 5-29 1-26 (356)
95 pfam07009 DUF1312 Protein of u 20.2 44 0.0011 11.8 1.4 17 37-53 24-40 (113)
96 PRK13887 conjugal transfer pro 20.1 44 0.0011 11.8 3.9 50 2-52 47-99 (252)
No 1
>PRK10788 peptidyl-prolyl cis-trans isomerase (rotamase D); Provisional
Probab=100.00 E-value=0 Score=807.22 Aligned_cols=602 Identities=20% Similarity=0.324 Sum_probs=537.7
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCC---H
Q ss_conf 9068876402268999999999999983131010367888428999987848999999999999999987088999---7
Q gi|254781158|r 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN---S 77 (631)
Q Consensus 1 Ml~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~---~ 77 (631)
||+.||++++||++++|+|||+++|++||++++++++ ++++||+|||++||..+|+++|+++++++++++|..++ .
T Consensus 1 ML~~iR~~~~~~~~killgliil~Fv~~Gv~~~~~~~-~~~~va~Vng~~Is~~e~~~~~~~~~~~~~~~~G~~~~~~~~ 79 (622)
T PRK10788 1 MMDNLRTAANSVVLKIILGLIILSFILTGVGGYLIGG-SNNYAAKVNGQEISRAQLEQAFQSERNRMQQQLGDQFSELAA 79 (622)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9288861660989999999999999982245236589-997489999998489999999999999999872755661121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89986013899999999999999999984982488999999963476554210239899999998611005677678887
Q gi|254781158|r 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 (631)
Q Consensus 78 ~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~ 157 (631)
++....+|++|||++||++.+|.|+|+++||.|||++|.+.|.++|+|| .+|+||+++|.++|+++|+|+++|++.+|+
T Consensus 80 ~e~~~~~l~~qvl~~LI~~~lL~q~A~~lGl~vsd~~v~~~I~~~p~Fq-~~G~Fd~~~y~~~L~~~g~t~~~f~~~~r~ 158 (622)
T PRK10788 80 NEGYMKQLRQQVLNRLIDEALLDQYARELGLGISDEQVKQAIFATPAFQ-TDGKFDNNRYNAILNQMGMTADQYAQALRN 158 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 3568999999999999999999999998699879999999998485643-269959999999999759999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75444555430145422002223345543211123332100001234567898899999765666555454433222211
Q gi|254781158|r 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 (631)
Q Consensus 158 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~ 237 (631)
++..+++...+.++.++++.+++.++++.+++|+++|+.++++.+.+.+.|||++|++||++|+++|+.||+|+++||.+
T Consensus 159 ~l~~~ql~~~i~~~~~~~~~e~~~~~~~~~q~R~v~~~~i~~~~~~~~~~vtd~el~~yY~~nk~~f~~pe~~~i~yv~l 238 (622)
T PRK10788 159 QLTTQQLINGVAGTDFMLPGETDELAALVLQQRVVREATIDVNALAAKQTVTDQEIQSYYDQNKNNFMAPEQFRVSYIKL 238 (622)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEECHHHHCCCCCCCHHHHHHHHHHCHHHHCCCCEEEEEEEEE
T ss_conf 99999999997642667999999999997421146889974677056689999999999995655406863488899983
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC----CCCCCC
Q ss_conf 0000000125788999875555455543321123788753000014788875303651478877520112----365245
Q gi|254781158|r 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313 (631)
Q Consensus 238 ~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~----~~~~lg 313 (631)
++..+.. .|||++|++||+.|+++|..|++|+++||+++++++|++++++|++|+||++||+++|.++ .||+||
T Consensus 239 ~~~~~~~--~vs~~ei~~~Y~~~~~~~~~pe~r~~~~I~~~~~~~A~~~~~~l~~G~dFa~lA~~~S~D~~Sa~~gGdLG 316 (622)
T PRK10788 239 DAATMQQ--TVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEDEAKAVLDELKKGADFATLAKEKSTDIISARNGGDMG 316 (622)
T ss_pred CHHHHCC--CCCHHHHHHHHHHHHHHCCCCHHEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 5667024--58999999999987775177411664301058999999999998769986999998378953212477313
Q ss_pred CCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31623226756777642023667225678617721121102333013445543223333456799998888865565776
Q gi|254781158|r 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 (631)
Q Consensus 314 ~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d 393 (631)
|++++.|| ++|++++|+ .+|+||+||+|+||||||||++++|+.++||++||++|+..|+.+++.+.+++..+++.+
T Consensus 317 ~~~~g~~~-~~f~~a~~~--~~GevS~pV~t~fG~hiikv~~i~~~~~~~~eevk~eI~~~l~~~~a~~~~~~~~~~~~d 393 (622)
T PRK10788 317 WLEDATTP-DELKNAGLK--EKGQLSGVIKSSVGFLIVRLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD 393 (622)
T ss_pred CCCCCCCH-HHHHHHHHH--CCCCCCCCEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42666442-899998874--679867847607823899983246677899899999999999999999999999999988
Q ss_pred HHHC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC------CCCCCCCCEECCCCEEEEE
Q ss_conf 5420-11001245540853200134441123456543221111168888753112------3467765111369749999
Q gi|254781158|r 394 FLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD------DPLSKDHTVALPDGSYMWV 466 (631)
Q Consensus 394 ~~~~-g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------~~~~~~~~~~~~~~~~~~~ 466 (631)
.... +.++..+++..++...++.++++.+. + .....+.+...+|+.. .++..+.+++++++.++++
T Consensus 394 ~~~~~~~~l~~~a~~~~l~~~~t~~~~~~~~---~----~~~~~~~~~~~~F~~~~~~~~~~~g~~sd~i~~~~~~~~v~ 466 (622)
T PRK10788 394 AASNDNESLAGAEQAAGVKAVQTGWFSRDNV---P----AELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466 (622)
T ss_pred HHHCCCCCHHHHHHHCCCEEEECCCCCCCCC---C----CCCCCHHHHHHHHCHHHHHHCCCCCCCCCCEEECCCEEEEE
T ss_conf 7632641148899865973574277576666---4----33453689998603566543036777787279669809999
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCH
Q ss_conf 98023223346678889999999999999999999999999999836999789898639814402562226554235798
Q gi|254781158|r 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546 (631)
Q Consensus 467 ~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~ 546 (631)
+|+++.|++++||++||++|+..|+.+++.+.++++|++++..+ +.|...+.+ +..++.+.+...++|... .
T Consensus 467 rv~~~~p~~~~~l~eVk~~V~~~~~~~~~~~~a~~~a~~ll~~l-~~g~~~~~~-~~~~~~~~~~~~~~r~~~------~ 538 (622)
T PRK10788 467 RISEHKPEAVKPLADVRDQVTALVKHQKAEQQAKVDAEKLLVAL-KAGKGAEAM-KAAGLSFGEPKTLSRSSQ------D 538 (622)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHH-HHCCCCEECCCCCCCCCC------H
T ss_conf 98466878789999999999999999999999999999999998-679965568-863983421445576774------0
Q ss_pred HHHHHHHCCCCCCCE----EEECCCCCEEEEEEECCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 999998616888720----3451699569999970587889--8789999999999999999999999999882981368
Q gi|254781158|r 547 DGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 (631)
Q Consensus 547 ~~~~~iF~~~~g~~~----~~~~~~~~~~~v~~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~Lr~~a~I~iN~ 620 (631)
+++..+|+++.+... ......++.+++++++.+++++ .++.+.+..+|.+..+++.+++|+.+||++|+|+||+
T Consensus 539 ~~~~~~f~l~~~~~~~~~~~~~~~~~g~~vv~~l~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Lr~~a~I~In~ 618 (622)
T PRK10788 539 PLSQAAFALPLPAKDKPSYGMANDMQGNVVLIALDEVKPGKMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGD 618 (622)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECH
T ss_conf 68999970877767996235786488888999966658999999999999999999999999999999999868978676
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781158|r 621 NLIQ 624 (631)
Q Consensus 621 ~~l~ 624 (631)
+++.
T Consensus 619 ~~~~ 622 (622)
T PRK10788 619 ALEQ 622 (622)
T ss_pred HHCC
T ss_conf 6449
No 2
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=100.00 E-value=0 Score=418.10 Aligned_cols=314 Identities=19% Similarity=0.270 Sum_probs=256.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHH--HHHHHHHHHHHHCCCCCCHHH---
Q ss_conf 876402268999999999999983131010367888428999987848999999--999999999987088999789---
Q gi|254781158|r 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQELGMISQKIGFVVNSER--- 79 (631)
Q Consensus 5 iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~--~~~~~~~~~~~~~g~~~~~~~--- 79 (631)
|+++ +.+++++|+++++++|++||+.+...+++++++||+|||++||..+|++ ++++.++++++|+|..+++..
T Consensus 1 ~~~~-~ki~~~~ii~~~~~~~vg~~~~~~~~~~~~~~~VA~Vng~~It~~e~~~~~~~~~~~~~l~~q~g~~~~~~~~~~ 79 (336)
T PRK00059 1 MKSA-KKIVASLLVGVFIFSAVGCNMVEKTPEAIAKTTVATVGGEKITRGDLDSDPSMKQVLEQLKSQYGDKYEKNEQVK 79 (336)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 9507-999999999999999830253346766778964898999984899999999999999999987430135570018
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98601389999999999999999998498248899999996347655421023989999999861100567767888775
Q gi|254781158|r 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 (631)
Q Consensus 80 ~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l 159 (631)
.....++.|||++||+++|+.|+|+++||.|||++|...|...+.|...+|+||.++|.++|+++|+|++.|++.+|+.+
T Consensus 80 ~~~~~~r~qvL~~LI~~~Ll~q~A~~~gl~vsd~ev~~~I~~~~~~~~~~g~f~~~~y~~~L~~~g~t~~~~~~~~r~~l 159 (336)
T PRK00059 80 EQLKQQKKQILESLITEKVLLQKAKELKLIPSDEELNKEVDKQVNEIKKQYNNDEEKFEEALKQTGFTEETFKEYLKNQI 159 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999998699849999999999999999883799999999999986999999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44455543014542200222334554321112333210000123456789889999976566655545443322221100
Q gi|254781158|r 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 (631)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~ 239 (631)
..+++...+. ..+.|||+||++||++|++.|.
T Consensus 160 ~~~~l~~~v~----------------------------------~~v~Vsd~Ei~~yY~~nk~~f~-------------- 191 (336)
T PRK00059 160 IIEKVINEVV----------------------------------KDVKVTDKDAQKYYDENKSTFT-------------- 191 (336)
T ss_pred HHHHHHHHHH----------------------------------CCCCCCHHHHHHHHHHHHHHHC--------------
T ss_conf 9999999974----------------------------------5686588999999999788733--------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC----CCCCCCCC
Q ss_conf 00000125788999875555455543321123788753000014788875303651478877520112----36524531
Q gi|254781158|r 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF 315 (631)
Q Consensus 240 ~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~----~~~~lg~~ 315 (631)
..|++++++||+++++++|+++..++++|++|+++|+++|.++ .||+|||+
T Consensus 192 -------------------------~~p~~~~~~~Il~~~~~~A~~i~~~l~~G~dF~~lAk~~S~D~~s~~~gGdLG~~ 246 (336)
T PRK00059 192 -------------------------EKPNTVHLSHILVKTEEEAKKVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDV 246 (336)
T ss_pred -------------------------CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf -------------------------7866588998887899999999999877998899999848995310148866640
Q ss_pred C--HHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6--23226756777642023667225678617721121102333013445543223333456799998888865565776
Q gi|254781158|r 316 S--KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 (631)
Q Consensus 316 ~--~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d 393 (631)
. ++.|+ ++|++++|+| ++|+||+||+|++|||||||++++|+.++||++||++|+..|..+++.+.+.+.++++.+
T Consensus 247 ~~~~~~~~-~~f~~a~f~L-k~GeiS~pV~t~~GyhIIkl~~~~~~~~~~feevk~~I~~~L~~qK~~~~~~e~~~~l~~ 324 (336)
T PRK00059 247 PYSDSNYD-KEFMDAAKAL-KEGEISAPVKTQFGYHIIKAIKKKEYPVKPFDSVKEQIKKQLLQEKQSEVFKKKIEEWKK 324 (336)
T ss_pred CCCCCCCC-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26766556-6899999745-688868860668867999997215788999999999999999999999999999999997
Q ss_pred H
Q ss_conf 5
Q gi|254781158|r 394 F 394 (631)
Q Consensus 394 ~ 394 (631)
.
T Consensus 325 ~ 325 (336)
T PRK00059 325 D 325 (336)
T ss_pred H
T ss_conf 3
No 3
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=100.00 E-value=2.4e-41 Score=287.92 Aligned_cols=249 Identities=19% Similarity=0.212 Sum_probs=206.7
Q ss_pred CCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 88428999987848999999999999999987088999789986013899999999999999999984982488999999
Q gi|254781158|r 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 (631)
Q Consensus 39 ~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~ 118 (631)
-..+||.||++.|+.+|+.++++.....+.++ |..++.+. .|+.+||++||.+.|+.|.|+++||.|||++|...
T Consensus 25 iD~IvAvVn~~iIl~sdl~~~~~~~~~~~~~~-~~~~p~~~----~Lr~qvLd~LI~e~Ll~Q~A~~~gi~Vsd~evd~~ 99 (428)
T PRK10770 25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAQQA-GQQLPDDA----TLRHQILERLIMDQIILQMGQKMGVKISDEQLDQA 99 (428)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 38279999990544999999999999999855-89999668----99999999999999999999983998699999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 96347655421023989999999861100567767888775444555430145422002223345543211123332100
Q gi|254781158|r 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 (631)
Q Consensus 119 i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~ 198 (631)
|.++. .+++|+.+.|...|...|++...|++.+|+++..+++.+..
T Consensus 100 i~~ia----~~~~~s~~q~~~~L~~~G~s~~~~r~~ir~ell~~~l~~~~------------------------------ 145 (428)
T PRK10770 100 IANIA----KQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNE------------------------------ 145 (428)
T ss_pred HHHHH----HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_conf 99999----87488799999999976997899999999999999999998------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00123456789889999976566655545443322221100000001257889998755554555433211237887530
Q gi|254781158|r 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 (631)
Q Consensus 199 ~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~ 278 (631)
+...+.+|++|+..||+.+...+..+..++++++.+.. +...+++++..
T Consensus 146 ---v~~~i~Vs~~Ev~~~~~~~~~~~~~~~e~~l~~Ili~~-----~~~~~~~~~~~----------------------- 194 (428)
T PRK10770 146 ---VRRRITILPQEVESLAKQIGNQNDASTELNLSHILIPL-----PENPTSDQVNE----------------------- 194 (428)
T ss_pred ---HHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-----CCCCCHHHHHH-----------------------
T ss_conf ---65010247899999999866422688617899999737-----88889999999-----------------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 0001478887530365147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
.++.|+++..++++|++|+++|+.+|.+ ..||++||+..+.+| +.|.++++.| ++|+||+||+|++||||++|.+
T Consensus 195 ~~~~a~~i~~~i~~G~dF~~lA~~~S~~~~a~~GGdlGw~~~~~lp-~~f~~a~~~l-~~Geis~pi~s~~G~HIikl~d 272 (428)
T PRK10770 195 AESQARSIVDQARNGADFGKLAIAYSADQQALKGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKVND 272 (428)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCH-HHHHHHHHHC-CCCCCCCCEECCCCEEEEEEHH
T ss_conf 9999999999987589989999982657101116864421122130-7899999716-8987235364178359997244
Q ss_pred CCCH
Q ss_conf 3301
Q gi|254781158|r 356 IKPS 359 (631)
Q Consensus 356 ~~~~ 359 (631)
++..
T Consensus 273 ~r~~ 276 (428)
T PRK10770 273 LRGA 276 (428)
T ss_pred HHCC
T ss_conf 3256
No 4
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=100.00 E-value=4.5e-34 Score=240.42 Aligned_cols=228 Identities=20% Similarity=0.328 Sum_probs=177.7
Q ss_pred CCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 88842899998784899999999999999998708899978998601389999999999999999998498248899999
Q gi|254781158|r 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 (631)
Q Consensus 38 ~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~ 117 (631)
+++..||+++|..||..||...+... + .-+++|++||...+|.+++ |-.|++.+|..
T Consensus 26 s~~~~Vat~kg~~IT~~e~y~~~k~~------~--------------~g~~~l~~mi~~kvl~~~y---g~kVsdkeV~~ 82 (298)
T PRK04405 26 SNNKTVATYKGGKITESQYYKEMKQS------S--------------AGKQTLANMIIYRALEKQY---GKKVSTKKVNK 82 (298)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC------H--------------HHHHHHHHHHHHHHHHHHH---CCCCCHHHHHH
T ss_conf 99976998639872599999998644------2--------------3679999999999999987---46067999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99634765542102398999999986110056776788877544455543014542200222334554321112333210
Q gi|254781158|r 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 (631)
Q Consensus 118 ~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~ 197 (631)
.+...- ..-| ..|..+|.++|+|++.|.+.+|..+..+..+
T Consensus 83 ~~~~~k---~qyg----~~f~~~L~q~g~te~~~K~~ik~~~l~~~a~-------------------------------- 123 (298)
T PRK04405 83 QYNSYK---KQYG----SSFDSVLSQNGMTTSSFKQNLRTNLLSEAAL-------------------------------- 123 (298)
T ss_pred HHHHHH---HHHH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--------------------------------
T ss_conf 999999---9971----8899999985998799999999999999999--------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00012345678988999997656665554544332222110000000125788999875555455543321123788753
Q gi|254781158|r 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 (631)
Q Consensus 198 ~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~ 277 (631)
.+...|||+++++||+.|+ .+.+++||++
T Consensus 124 -----k~~~kvTd~~~k~~y~~~~----------------------------------------------p~v~~~hIlv 152 (298)
T PRK04405 124 -----KDLKKITTAQLKKAWKSYQ----------------------------------------------PKVTVQHILV 152 (298)
T ss_pred -----HHCCCCCHHHHHHHHHHCC----------------------------------------------CCEEEEEEEE
T ss_conf -----8548988899999998549----------------------------------------------8658899886
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCC--HHHCCCHHHHHHHHCCCCCCCE-EEEEEECCCCHH
Q ss_conf 00001478887530365147887752011----2365245316--2322675677764202366722-567861772112
Q gi|254781158|r 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS--KEYIPDVSLADSIFSLAKKGDF-TPVIHGSFGYVI 350 (631)
Q Consensus 278 ~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~--~~~~~~~~~~~a~f~l~~~G~i-s~pv~t~~G~~i 350 (631)
.+++.|+++..+|++|++|++||+++|.+ .+||+||||. .+.|+ |+|.+++|+| +.|++ +.||+|+|||||
T Consensus 153 ~~e~~A~~v~~~l~~G~dF~~lAk~~S~D~~sk~~GG~Lg~f~~~~~~m~-~~f~~aaf~L-k~geis~~PvkT~~GYhI 230 (298)
T PRK04405 153 SKKSTAETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLPAFDSTDTTLD-STFKTAAFKL-KNGEYTTTPVKTTYGYEV 230 (298)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCC-HHHHHHHHCC-CCCCCCCCCEECCCCEEE
T ss_conf 78999999999987899789999983889865556862540407998617-6999999748-899816884521673399
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11023330134455432233334567999988
Q gi|254781158|r 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 (631)
Q Consensus 351 ikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~ 382 (631)
|+|++..+- .+|++++++|+..|..++..+
T Consensus 231 IK~~~~~~k--~~~~~~K~~l~~~i~~~k~~D 260 (298)
T PRK04405 231 IKMIKHPAK--GKFTDHKKELTKQIYAKWASD 260 (298)
T ss_pred EEEECCCCC--CCHHHHHHHHHHHHHHHHHHC
T ss_conf 998345777--988999999999999987308
No 5
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=238.02 Aligned_cols=234 Identities=17% Similarity=0.324 Sum_probs=179.4
Q ss_pred HHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999983131010367888428999987848999999999999999987088999789986013899999999999999
Q gi|254781158|r 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 (631)
Q Consensus 21 ~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~ 100 (631)
++..|++.|++. .+++.+||+|||..||..||...+.. + ..+++|.+||.+.++.
T Consensus 12 ~~svl~LaaC~~----~~~~~~VAtv~g~~IT~~df~~~lk~-------~--------------~g~~~l~~mi~~kvl~ 66 (285)
T PRK03002 12 LISILMLSACGQ----KNSSATVATATDSTITKSDFEKQLKD-------R--------------YGKDMLYEMMAQDVIT 66 (285)
T ss_pred HHHHHHHHHHCC----CCCCCEEEEECCCEECHHHHHHHHHH-------H--------------HHHHHHHHHHHHHHHH
T ss_conf 999999998457----99997799868978739999999998-------8--------------7899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99998498248899999996347655421023989999999861100-56776788877544455543014542200222
Q gi|254781158|r 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN-EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 (631)
Q Consensus 101 ~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 179 (631)
+.+ .|++++|...+...-. .-| +.|.+.|.++|++ +.+|.+.++..+..++...
T Consensus 67 ~~y-----kvs~~ev~~e~~~~k~---qyg----~~f~~~L~q~glt~e~~~k~qi~~~l~~~~~~k------------- 121 (285)
T PRK03002 67 KKY-----KVSDDDVDKEVQKAKS---QYG----DQFKNVLENNGLKDEADFKNQIKFKLAMNEAIK------------- 121 (285)
T ss_pred HHH-----CCCHHHHHHHHHHHHH---HHH----HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-------------
T ss_conf 861-----2689999999999999---987----899999998699758999999999999999986-------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 33455432111233321000012345678988999997656665554544332222110000000125788999875555
Q gi|254781158|r 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 (631)
Q Consensus 180 ~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~ 259 (631)
..|||++++.||+
T Consensus 122 ------------------------------------------------------------------~~vtd~d~k~~Y~- 134 (285)
T PRK03002 122 ------------------------------------------------------------------KSVTEKDVKDHYK- 134 (285)
T ss_pred ------------------------------------------------------------------CCCCHHHHHHHCC-
T ss_conf ------------------------------------------------------------------3288999998618-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCC
Q ss_conf 45554332112378875300001478887530365147887752011----23652453162322675677764202366
Q gi|254781158|r 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK 335 (631)
Q Consensus 260 ~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~ 335 (631)
+..+++||++.++++|+++..+|++|+||++||+++|.+ .+||+|||+.++.|+ |+|.+++|+| ++
T Consensus 135 --------pev~~~hIlv~~e~~A~~v~~~l~~G~dF~~lAk~~S~D~~s~~~GG~lg~~~~~~~~-~ef~~aaf~L-~~ 204 (285)
T PRK03002 135 --------PEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KV 204 (285)
T ss_pred --------CCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCC-HHHHHHHHHC-CC
T ss_conf --------7638888777899999999999887999999999968993010048616635898766-7999999828-99
Q ss_pred CCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 722567861772112110233301344554322333345679999888
Q gi|254781158|r 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 (631)
Q Consensus 336 G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~~ 383 (631)
|+||+||+|++|||||||+++++ ..||+++|++|+..+..++..+.
T Consensus 205 GeiS~pv~t~~GyhIIk~~dk~~--~~~~~~~k~~i~~~i~~~k~~d~ 250 (285)
T PRK03002 205 GQISNPVKSPNGYHIIKLTDKKD--LKPYDEVKDSIRKNLEEERIADP 250 (285)
T ss_pred CCCCCCEEECCEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 88687877478169999841688--99989999999999999986677
No 6
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=100.00 E-value=2e-33 Score=236.27 Aligned_cols=231 Identities=21% Similarity=0.313 Sum_probs=182.9
Q ss_pred CCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 78884289999878489999999999999999870889997899860138999999999999999999849824889999
Q gi|254781158|r 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 (631)
Q Consensus 37 ~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~ 116 (631)
.++++.|+++.|..||.+||...+.. + ..+++|++||...+|.+.+ .||+.+|.
T Consensus 21 ~~~~~~vat~kgg~IT~~e~y~~~k~---~------------------~g~~~l~~mi~~kvl~~~y-----kVsdkeV~ 74 (287)
T PRK03095 21 TSSSDKIVTSKAGDITKDEFYEQMKT---Q------------------AGKQVLNNMVMEKVLIKNY-----KVEDKEVD 74 (287)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH---H------------------HHHHHHHHHHHHHHHHHHC-----CCCHHHHH
T ss_conf 89987589846982729999999998---8------------------8999999999999999964-----87899999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99963476554210239899999998611005677678887754445554301454220022233455432111233321
Q gi|254781158|r 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 (631)
Q Consensus 117 ~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~ 196 (631)
..+... ...-| +.|..+|.++|+|++.|.+.+|..+...+...
T Consensus 75 ~~~~~~---k~qyG----~~F~~~L~q~glt~e~~K~~ir~~l~~~~a~~------------------------------ 117 (287)
T PRK03095 75 KKYDEM---KKQYG----DQFDTLLKQQGIKEETLKTGVRAQLAQEKAIE------------------------------ 117 (287)
T ss_pred HHHHHH---HHHHH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH------------------------------
T ss_conf 999999---99987----99999999879998999999999999999986------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001234567898899999765666555454433222211000000012578899987555545554332112378875
Q gi|254781158|r 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 (631)
Q Consensus 197 ~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~ 276 (631)
..+||++++.| |. +..+++||+
T Consensus 118 ---------~~itd~e~k~~----------------------------------------y~---------p~v~~~hIl 139 (287)
T PRK03095 118 ---------KTITDKELKEN----------------------------------------YK---------PEIKASHIL 139 (287)
T ss_pred ---------CCCCHHHHHHH----------------------------------------CC---------CCEEEEEEE
T ss_conf ---------42889999986----------------------------------------49---------864899988
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC----CCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 3000014788875303651478877520112----365245316232267567776420236672256786177211211
Q gi|254781158|r 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 (631)
Q Consensus 277 ~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~----~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iik 352 (631)
+.+++.|+++..+|++|+||++||+++|.++ +||++||+..+.|+ |+|++++|.| +.|+||+||+|++|||||+
T Consensus 140 v~~e~~Ak~i~~~l~~G~dF~~lAk~~S~D~~s~~~GG~lg~~~~~~~~-~~f~~aaf~L-k~geiS~Pvkt~~GyhIIk 217 (287)
T PRK03095 140 VKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMV-KEFEDAAYKL-KKDEVSEPVKSQFGYHIIK 217 (287)
T ss_pred ECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCH-HHHHHHHHCC-CCCCCCCCEEECCEEEEEE
T ss_conf 8999999999999987998999999967996502039715657987625-9999999728-9998588676088359999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 0233301344554322333345679999888--88655657
Q gi|254781158|r 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEK--VKEDYKRL 391 (631)
Q Consensus 353 v~~~~~~~~~~~~evk~~I~~~l~~~~a~~~--~~~~~~~i 391 (631)
|+++++. ..+|+++|++|+..|..++..+. +...+.++
T Consensus 218 ~~~k~~k-~~~~~~~K~~lk~~i~~~k~~D~~~~~~vi~k~ 257 (287)
T PRK03095 218 VTDIKEP-EKSFEQSKADIKKELVQKKAQDGEFMNDLMMKE 257 (287)
T ss_pred EEECCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 8414788-999899999999999999864769999999999
No 7
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=100.00 E-value=6.3e-33 Score=232.95 Aligned_cols=221 Identities=18% Similarity=0.320 Sum_probs=172.7
Q ss_pred CCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 84289999878489999999999999999870889997899860138999999999999999999849824889999999
Q gi|254781158|r 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 (631)
Q Consensus 40 ~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i 119 (631)
++.|+++.|-.||.+||...+... ...++|.+||...+|.+.. .|||.+|...+
T Consensus 25 ~~~vat~kgg~IT~~e~y~~lk~~---------------------~g~~~l~~li~~kvl~~~y-----kVsdkev~~~~ 78 (283)
T PRK02998 25 SDNVVTSKVGNITEKELSKELRQK---------------------YGESTLYQMVLSKALLDKY-----KVSDEEAKKQV 78 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHH
T ss_conf 981798439928399999999999---------------------9999999999999999983-----68899999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6347655421023989999999861100-567767888775444555430145422002223345543211123332100
Q gi|254781158|r 120 ARSPLFHGKDNKFSHDVFVSRLAREGIN-EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 (631)
Q Consensus 120 ~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~ 198 (631)
...- ..-| +.|..+|.++|+| +.+|.+.++..+...+..
T Consensus 79 ~~~k---~qyG----~~F~~~L~q~g~t~e~~~k~~i~~~l~~~~a~--------------------------------- 118 (283)
T PRK02998 79 EEAK---DKMG----DNFKSTLEQVGLKNEDELKEKMKPEIAFEKAI--------------------------------- 118 (283)
T ss_pred HHHH---HHHH----HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_conf 9999---9997----89999999869982899999999999999987---------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00123456789889999976566655545443322221100000001257889998755554555433211237887530
Q gi|254781158|r 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 (631)
Q Consensus 199 ~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~ 278 (631)
...+||++++.+|. | ..+++||++.
T Consensus 119 ----------------------------------------------k~~vtd~~~k~~y~--------p-~~~~~hIlv~ 143 (283)
T PRK02998 119 ----------------------------------------------KATVTEKDVKDNYK--------P-EMKVSHILVK 143 (283)
T ss_pred ----------------------------------------------HCCCCHHHHHHHCC--------C-CEEEEEEEEC
T ss_conf ----------------------------------------------55188899998649--------8-6488998989
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCC----CCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHC
Q ss_conf 00014788875303651478877520112----36524531623226756777642023667225678617721121102
Q gi|254781158|r 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~F~~la~~~~~~~----~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~ 354 (631)
++++|+++..+|++|+||++||+++|.++ +||+|||+.++.|+ |+|++++|+| ++|+||+||+|++|||||+|+
T Consensus 144 ~e~~A~~v~~~L~~G~dF~~lAk~yS~D~~s~~~GG~Lg~~~~g~~~-~~f~~Aaf~L-~~G~vS~PVkt~~GyHIIkv~ 221 (283)
T PRK02998 144 DEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV-KEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVT 221 (283)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHCC-CCCCCCCCEEECCEEEEEEEE
T ss_conf 89999999999877998999999958996644358866767999807-8999999759-999948877878867999980
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3330134455432233334567999988888
Q gi|254781158|r 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 (631)
Q Consensus 355 ~~~~~~~~~~~evk~~I~~~l~~~~a~~~~~ 385 (631)
+.++ .+||+++|++|+..|..++..+...
T Consensus 222 dk~~--~~~~~~~K~~l~~~i~~~k~~d~~~ 250 (283)
T PRK02998 222 DKKE--LKPFDEVKDSIRKDLEQQRLQDTTG 250 (283)
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1688--9999999999999999999755478
No 8
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.97 E-value=6.6e-30 Score=213.20 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=183.1
Q ss_pred HHHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998313101036788842899998784899999999999999998708899978998601389999999999999999
Q gi|254781158|r 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 (631)
Q Consensus 23 ~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~ 102 (631)
..|++.|+++ .+++..|++..|-.||.+||...+.. ...-+|+|++||-..+|...
T Consensus 14 svl~LaaCs~----~~~~~~vat~kgg~IT~~e~Y~~~K~--------------------~~~g~q~l~~mi~~kvLe~~ 69 (310)
T PRK01326 14 SVATLAACSK----TNDNTKVISMKGDTITVSDFYNEVKN--------------------NEVAQQAMLNLVISRVFEKQ 69 (310)
T ss_pred HHHHHHHHCC----CCCCCEEEEECCCCEEHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHH
T ss_conf 9999987169----99880689824993429999999846--------------------64289999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99849824889999999634765542102398999999986110056776788877544455543014542200222334
Q gi|254781158|r 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 (631)
Q Consensus 103 a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 182 (631)
+|-.|||.+|...+...- ..-| +.|..+|.++|+|++.|.+.+|..++.+......
T Consensus 70 ---Yg~kVsdkeV~~~~~~~k---~qyG----~~F~~~L~q~g~T~e~~K~qir~~lL~e~A~k~~-------------- 125 (310)
T PRK01326 70 ---YGDKVSDKEVEKAYHKTA---KQYG----ASFSAALAQAGLTPETYKRQIRTSKLVEYAVKEA-------------- 125 (310)
T ss_pred ---HCCCCCHHHHHHHHHHHH---HHHH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--------------
T ss_conf ---626178999999999999---9986----8999999986998899999999989999999987--------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55432111233321000012345678988999997656665554544332222110000000125788999875555455
Q gi|254781158|r 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 (631)
Q Consensus 183 ~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~ 262 (631)
....+||++|++||+.++
T Consensus 126 ---------------------ak~~iTd~~lK~~y~~y~----------------------------------------- 143 (310)
T PRK01326 126 ---------------------AKKELTDEEYKKAYESYT----------------------------------------- 143 (310)
T ss_pred ---------------------HHCCCCHHHHHHHHHHCC-----------------------------------------
T ss_conf ---------------------534378899999997349-----------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHCC-CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 54332112378875300001478887530-365147887752011-2365245316232267567776420236672256
Q gi|254781158|r 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 (631)
Q Consensus 263 ~f~~pe~~~~~~i~~~~~~~A~~~~~~l~-~g~~F~~la~~~~~~-~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~ 340 (631)
+.++++||++.++++|+++..+|+ .|++|++||++++.+ ..||++||+..+.+++++|.+|+|.| +.|++|.
T Consensus 144 -----p~v~a~hIlv~~e~~Ak~vi~~l~a~G~dFa~lAKe~St~k~~GG~l~f~~~~~~~~~~f~~AAfkL-k~gevS~ 217 (310)
T PRK01326 144 -----PEVTVQIITLDNEDKAKSVLEEAKAEGADFAQIAKEKTTTKEKKVEYKFDSGATNVPTDVKKAAFSL-DEGGVSD 217 (310)
T ss_pred -----CCEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC-CCCCCCC
T ss_conf -----8537899872568889999999863787489998652578556973454789980769999998706-6898466
Q ss_pred EEEE------CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7861------77211211023330134455432233334567999988
Q gi|254781158|r 341 VIHG------SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 (631)
Q Consensus 341 pv~t------~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~ 382 (631)
|+.+ +||||||+|.+.. +....|++++++|+..|..++..+
T Consensus 218 ~v~t~~p~~~q~gYhIIK~~~k~-eK~~~~~~~K~~lk~~i~~~k~~D 264 (310)
T PRK01326 218 VISVLDPTSYQKKYYIVKVTKKT-EKKSDWQDYKKRLKAIILAQKSKD 264 (310)
T ss_pred CEECCCCCCCCCEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 11247876555406999973676-667778999999999999986227
No 9
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.97 E-value=1.9e-28 Score=203.74 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=177.8
Q ss_pred HHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99983131010367888428999987848999999999999999987088999789986013899999999999999999
Q gi|254781158|r 24 PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 (631)
Q Consensus 24 ~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a 103 (631)
.|++.|+|+ ++++..|++..|-.||.+||...+.. ...-+++|.+||-..+|..
T Consensus 17 vl~LaAC~s----~~~~~~v~t~kgg~IT~~efy~~~K~--------------------t~~gq~~L~~mi~~KvLe~-- 70 (309)
T PRK12450 17 VVTLSACQS----SHNNTKLVSMKGDTITVSDFYNETKN--------------------TELAQKAMLSLVISRVFET-- 70 (309)
T ss_pred HHHHHHHCC----CCCCCEEEEECCCCCCHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHH--
T ss_conf 999986058----99983689835992409999999853--------------------4158999999999999999--
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 98498248899999996347655421023989999999861100567767888775444555430145422002223345
Q gi|254781158|r 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 (631)
Q Consensus 104 ~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 183 (631)
++|-.|||.+|...+...- ..-| ..|..+|.++|+|++.|.+.+|..++........
T Consensus 71 -kYg~kVsdkeVd~~~~~~k---~qyG----~~F~~~L~q~GlT~e~~K~~ir~~ll~~~Avk~~--------------- 127 (309)
T PRK12450 71 -QYANKVSDKEVEKAYKQTA---DQYG----TSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQ--------------- 127 (309)
T ss_pred -HHCCCCCHHHHHHHHHHHH---HHHH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf -8535178899999999999---9986----8999999987998799999999988999999986---------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 54321112333210000123456789889999976566655545443322221100000001257889998755554555
Q gi|254781158|r 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 (631)
Q Consensus 184 ~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~ 263 (631)
.....+||++++.+|+..+
T Consensus 128 -------------------~k~~~vTdk~~K~~y~~y~------------------------------------------ 146 (309)
T PRK12450 128 -------------------AKNETISKKDYRQAYDAYT------------------------------------------ 146 (309)
T ss_pred -------------------HHHCCCCHHHHHHHHHHCC------------------------------------------
T ss_conf -------------------5302568299999998449------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHCCCCCC-CCCCCC-HHHCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 4332112378875300001478887530-3651478877520112365-245316-232267567776420236672256
Q gi|254781158|r 264 YFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDI-SLGSFS-KEYIPDVSLADSIFSLAKKGDFTP 340 (631)
Q Consensus 264 f~~pe~~~~~~i~~~~~~~A~~~~~~l~-~g~~F~~la~~~~~~~~~~-~lg~~~-~~~~~~~~~~~a~f~l~~~G~is~ 340 (631)
....++||++.+++.|+++..+|+ .|++|++||+++|.+...+ +.++.. .+.|| ++|.+|+|.| +.|++|.
T Consensus 147 ----p~v~a~hIlv~dE~tAk~V~~~l~a~G~dFa~LAKe~St~~~~k~~~~fd~~~~~~~-~ef~~AAfkL-k~GevS~ 220 (309)
T PRK12450 147 ----PTMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLP-AEVVRAASGL-KEGNRSE 220 (309)
T ss_pred ----CCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-HHHHHHHHCC-CCCCCCC
T ss_conf ----861465441342877999999986478658999877245655688767777897562-8999998716-6887144
Q ss_pred ------EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------7861772112110233301344554322333345679999888
Q gi|254781158|r 341 ------VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 (631)
Q Consensus 341 ------pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~~ 383 (631)
||+++||||||++++... .-+.|++.+++|+..|..++..+.
T Consensus 221 ~i~~~~Pvkt~~GYhIIK~t~k~e-K~~~~~~~K~~lk~~i~~~k~~d~ 268 (309)
T PRK12450 221 IITALDPATSKRTYHIIKVTKKAT-KKADWKAYQKRLKDIIVTGKLKDP 268 (309)
T ss_pred CCCCCCCCCCCCCEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 223688720157638999815755-456689999999999999871287
No 10
>PRK10788 peptidyl-prolyl cis-trans isomerase (rotamase D); Provisional
Probab=99.92 E-value=3.6e-21 Score=156.10 Aligned_cols=323 Identities=12% Similarity=0.143 Sum_probs=204.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45678988999997656665554544332222110000000125788999875555455543321123788753000014
Q gi|254781158|r 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 (631)
Q Consensus 204 ~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A 283 (631)
...-+++.++..++.-. -++|.+.|+.++++.+...+.|||++|++||++|+++|..|++|++.++.+.....+
T Consensus 171 ~~~~~~~~e~~~~~~~~------~q~R~v~~~~i~~~~~~~~~~vtd~el~~yY~~nk~~f~~pe~~~i~yv~l~~~~~~ 244 (622)
T PRK10788 171 GTDFMLPGETDELAALV------LQQRVVREATIDVNALAAKQTVTDQEIQSYYDQNKNNFMAPEQFRVSYIKLDAATMQ 244 (622)
T ss_pred HCCCCCHHHHHHHHHHH------HHHHEEEEEEECHHHHCCCCCCCHHHHHHHHHHCHHHHCCCCEEEEEEEEECHHHHC
T ss_conf 42667999999999997------421146889974677056689999999999995655406863488899983566702
Q ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf 78887530365147887752011236524531623226756777642023667225678617721121102333013445
Q gi|254781158|r 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 (631)
Q Consensus 284 ~~~~~~l~~g~~F~~la~~~~~~~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~ 363 (631)
.. .+=+++...|... ..-|..+....+ -|| .+..
T Consensus 245 ~~--------vs~~ei~~~Y~~~--------------------~~~~~~pe~r~~---------~~I-~~~~-------- 278 (622)
T PRK10788 245 QT--------VSDADIQAYYDQH--------------------QDQFTQPERKRY---------SII-QTKT-------- 278 (622)
T ss_pred CC--------CCHHHHHHHHHHH--------------------HHHCCCCHHEEE---------EEE-ECCC--------
T ss_conf 45--------8999999999987--------------------775177411664---------301-0589--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 54322333345679999888886556577654201100124554085320013---444112345654322111116888
Q gi|254781158|r 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP---LVDFAGKDVKGKEVAAIPYKEQLL 440 (631)
Q Consensus 364 ~~evk~~I~~~l~~~~a~~~~~~~~~~i~d~~~~g~~l~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 440 (631)
..+ ...+.+.+..|.+|.++|+.++....+.. ..+|++++. ..++.-
T Consensus 279 -------------~~~--------A~~~~~~l~~G~dFa~lA~~~S~D~~Sa~~gGdLG~~~~g~---------~~~~f~ 328 (622)
T PRK10788 279 -------------EDE--------AKAVLDELKKGADFATLAKEKSTDIISARNGGDMGWLEDAT---------TPDELK 328 (622)
T ss_pred -------------HHH--------HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC---------CHHHHH
T ss_conf -------------999--------99999998769986999998378953212477313426664---------428999
Q ss_pred HHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 87531123467765111369749999980232233466788899999999999999999999999999998369997898
Q gi|254781158|r 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 (631)
Q Consensus 441 ~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~a~~~~~~~~~~g~~l~~~ 520 (631)
.++|. .. ++.+.++....| |.+++|+++.|+..+||++||++|...++.+++.....+..+++.......+.+++.+
T Consensus 329 ~a~~~-~~-GevS~pV~t~fG-~hiikv~~i~~~~~~~~eevk~eI~~~l~~~~a~~~~~~~~~~~~d~~~~~~~~l~~~ 405 (622)
T PRK10788 329 NAGLK-EK-GQLSGVIKSSVG-FLIVRLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLAGA 405 (622)
T ss_pred HHHHH-CC-CCCCCCEEECCC-EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 98874-67-986784760782-3899983246677899899999999999999999999999999988763264114889
Q ss_pred HHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCC-------CCCCCEEEECCCCCEEEEEEECCCCCCCHHHH----HH
Q ss_conf 98639814402562226554235798999998616-------88872034516995699999705878898789----99
Q gi|254781158|r 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-------PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DK 589 (631)
Q Consensus 521 a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~-------~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~----~~ 589 (631)
++..|+++.+.+.+++...+...-.+.+...+|+. +.|..+.....+++.+++++|++..|+..... ++
T Consensus 406 a~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~g~~sd~i~~~~~~~~v~rv~~~~p~~~~~l~eVk~~ 485 (622)
T PRK10788 406 EQAAGVKAVQTGWFSRDNVPAELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEHKPEAVKPLADVRDQ 485 (622)
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCEEECCCEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 98659735742775766664334536899986035665430367777872796698099999846687878999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999
Q gi|254781158|r 590 FISYLTQMMNKDLLDSVIAYLK 611 (631)
Q Consensus 590 ~~~~l~~~~~~~~~~~~~~~Lr 611 (631)
++..+.............+.|.
T Consensus 486 V~~~~~~~~~~~~a~~~a~~ll 507 (622)
T PRK10788 486 VTALVKHQKAEQQAKVDAEKLL 507 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 11
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-19 Score=145.66 Aligned_cols=264 Identities=21% Similarity=0.249 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHCCCC-CCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 22689999999999999831310103678-88428999987848999999999999999987088999789986013899
Q gi|254781158|r 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88 (631)
Q Consensus 10 ~s~~~~ii~~l~~~~f~~~g~~~~~~~~~-~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~q 88 (631)
.+|++.+++++++.+|..|++......+. ....++.+++..++..++........ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (320)
T COG0760 3 NSAIAKILLGLIALAFAAFGVSASLVAGVVNAGAVAKVGAQEISAKEKLNAQQKER----------------------NI 60 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
T ss_conf 88999999999999999986100245543005789875477663268999873116----------------------66
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_conf 9999999999999999849824889999999634765542102398999999986110056776788877544455---5
Q gi|254781158|r 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV---V 165 (631)
Q Consensus 89 vl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l---~ 165 (631)
+..+++...+..+.+..++..++++.+...+.....+. .. ....+.......+.+...+....+........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (320)
T COG0760 61 ALEQLGEQLLLLQAAAELGIKISQQVVAQLIAEIAVLD-KL---AKELLLGLSDEQGKQLIAEKPAFQDVEGKFDARAYL 136 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987776777777777999998776689988-98---999999888765221454789999999989999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 43014542200222334554321112333210000123456789889999976566655545443322221100000001
Q gi|254781158|r 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 (631)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~ 245 (631)
..+.. ...+.
T Consensus 137 ~~~~~-----------------------------------~~~~~----------------------------------- 146 (320)
T COG0760 137 KRLRI-----------------------------------KGLTE----------------------------------- 146 (320)
T ss_pred HHHHH-----------------------------------CCCCH-----------------------------------
T ss_conf 99876-----------------------------------03765-----------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHCCC----CCCCCCCCC
Q ss_conf 257889998755554555433211237887530000147888753036-----51478877520112----365245316
Q gi|254781158|r 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAEEQGKSL----SDISLGSFS 316 (631)
Q Consensus 246 ~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g-----~~F~~la~~~~~~~----~~~~lg~~~ 316 (631)
..+.+....+..+......+.+++.+||+++++..|.++...++.+ .+|+++|++++.++ .|+.+||..
T Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~ 224 (320)
T COG0760 147 --EQEAEALRDKLQNKQQGKKVTEVQARHILVKAEAKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNK 224 (320)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCC
T ss_conf --469999999998876310034554543103324656999999873242200347999998366825420576333245
Q ss_pred HHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2322675677764202366722567861772112110233301344554322333345
Q gi|254781158|r 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 (631)
Q Consensus 317 ~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~ 374 (631)
.+.++ |+|..++|.+ ++|++++|+++++||||+++.++++.... +++++..+...
T Consensus 225 ~~~~~-p~f~~a~~~~-~~g~~~~pv~t~~g~~ii~v~~~~~~~~~-~~~~~~~~~~~ 279 (320)
T COG0760 225 KGQLV-PEFRKAAFIL-KVGEVSAPVKTSFGYHIIKVEKKRDAKLD-FPEVKAVKEIS 279 (320)
T ss_pred CCCCC-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEEECCCCCCCC-CHHHHHHHHHH
T ss_conf 67667-8899999756-67871675567665899831034553345-34889999998
No 12
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.83 E-value=6.1e-18 Score=135.02 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHCCC-CHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCC
Q ss_conf 112378875300---------001478887530365-147887752011----236524531623226756777642023
Q gi|254781158|r 268 EIRTVEQLVFPN---------QKEADEAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLA 333 (631)
Q Consensus 268 e~~~~~~i~~~~---------~~~A~~~~~~l~~g~-~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~ 333 (631)
.+++++||++.. ++.++++++.+.+|. +|+++|+++|.| ..||+|||+.++.|+ |+|+.++++|
T Consensus 283 ~e~~~rHILi~~~~~~~~~~a~~~l~~i~~~i~~g~~~F~~~A~~~S~D~~Sa~~GGdLgw~~~~~~~-p~f~~~~~~l- 360 (428)
T PRK10770 283 TEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFD-PAFRDALTRL- 360 (428)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCC-HHHHHHHHCC-
T ss_conf 55766676337886657599999999999998767557999999862795245428836777845479-7899999708-
Q ss_pred CCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 667225678617721121102333013445543223333456799998888865565776
Q gi|254781158|r 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 (631)
Q Consensus 334 ~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d 393 (631)
++|+||+||+|+|||||++|++++.... +-+.-++.++..|...+..+.+.+-..++.+
T Consensus 361 ~~GeiS~Pv~t~~G~hii~l~~~R~~d~-~~~~~r~~~~~~l~~~k~~~~~~~wl~~lR~ 419 (428)
T PRK10770 361 NKGQISAPVHSSFGWHLIELLDTRQVDK-TDAAQKDRAYRMLFNRKFSEEAATWMQEQRA 419 (428)
T ss_pred CCCCCCCCEECCCEEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999165666587069999984036786-4255899999999999999999999999985
No 13
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=99.82 E-value=1.5e-18 Score=139.02 Aligned_cols=234 Identities=12% Similarity=0.236 Sum_probs=181.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 899978998601389999999999999999998498248899999996347655421023-9899999998611005677
Q gi|254781158|r 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEY 151 (631)
Q Consensus 73 ~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~F-d~~~~~~~L~~~g~t~~~~ 151 (631)
..+++++ ...+.++.-.|.+-+..+.+-+...++.|+.+.|...-..+ ..+| +.+.+...|...++++.+-
T Consensus 17 ~~L~~~~--~~~~~~~~~RQ~~~E~Av~~~~~~~~~~i~p~~le~~Wahi------asryes~~~L~~~L~~~~l~A~~~ 88 (270)
T TIGR02933 17 AELSPDQ--LQQFEQAWQRQRHIEQAVVEAADESAVDIPPSLLEEVWAHI------ASRYESAQALAAELDEQELAAAER 88 (270)
T ss_pred CCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------HHCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 7889877--89999999877899999997365224647888899999998------731567789998713304893017
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67888775444555430145422002223345543211123332100001234567898899999765666555454433
Q gi|254781158|r 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 (631)
Q Consensus 152 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~ 231 (631)
.+.+++.+.....+..|..++ +.|+++++..||-.|..+|+.||.|=
T Consensus 89 ~a~l~h~~~l~~~L~~v~~q~---------------------------------p~p~~a~V~~wY~~Ha~~F~rPeQrl 135 (270)
T TIGR02933 89 EALLAHHVRLEAQLASVAEQA---------------------------------PQPDDAEVEAWYRRHAEQFVRPEQRL 135 (270)
T ss_pred HHHHHHHHHHHHHHHHHHCCC---------------------------------CCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999999999997058---------------------------------99960358899888674057713442
Q ss_pred HHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH---CC
Q ss_conf 22221100-0000012578899987555545554332112378875300001478887530365-1478877520---11
Q gi|254781158|r 232 ISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG---KS 306 (631)
Q Consensus 232 i~yv~~~~-~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~-~F~~la~~~~---~~ 306 (631)
-.-+.++- ++|+... + + ......+.++.+|+++. -||.+|..+| ++
T Consensus 136 trHLLlTv~edfPen~--~-e--------------------------Av~~ri~al~rrL~~~~~~FA~~A~rhS~CPtA 186 (270)
T TIGR02933 136 TRHLLLTVNEDFPEND--R-E--------------------------AVRERILALLRRLRAKRAAFAELAERHSHCPTA 186 (270)
T ss_pred HHHHHEECCCCCCCCC--C-H--------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH
T ss_conf 2233201158779888--1-7--------------------------899999999987468856789998762778620
Q ss_pred CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 236524531623226756777642023667225678617721121102333013445543223333456799
Q gi|254781158|r 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 (631)
Q Consensus 307 ~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~ 378 (631)
..||-|||+++|-+- |++++++|.| ..|+.|.||+|+.|||++.+..|+|+.+-+.+++=..++..|...
T Consensus 187 l~gG~LGWv~RG~LY-p~Ld~aLF~L-~~G~LS~~~es~lGwHlL~CE~irp~~pl~~~~aL~~~rd~L~~r 256 (270)
T TIGR02933 187 LEGGLLGWVSRGLLY-PQLDAALFQL-AEGELSAPIESELGWHLLLCEAIRPARPLEKEEALERARDRLLLR 256 (270)
T ss_pred HCCCCEEEECCCCCC-HHHHHHHHHH-HCCCCCCCHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 227820443077666-0078999998-606888601110146778753048656789878989999999999
No 14
>pfam09312 SurA_N SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.
Probab=99.65 E-value=9.5e-15 Score=114.18 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=101.3
Q ss_pred CEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42899998784899999999999999998708899978998601389999999999999999998498248899999996
Q gi|254781158|r 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 (631)
Q Consensus 41 ~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~ 120 (631)
.+||.|||++||.+||.++++.....+..+ |.+.+++. .++.++|++||++.|+.|+|+++||.|||++|...|.
T Consensus 3 ~IvAiVN~~iIt~~el~~~~~~~~~~~~~~-~~~~~~~~----~l~~~vL~~LI~~~L~~q~A~~~gi~vsd~evd~~i~ 77 (118)
T pfam09312 3 RIVAVVNDGVILQSELDRRVKTVKRQLAKQ-GTQLPPDA----VLRRQVLERLILERIQLQMAERTGIRVDDEQLNQAIA 77 (118)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 268888992648999999999999999865-89999289----9999999999999999999998599998999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 347655421023989999999861100567767888775444555
Q gi|254781158|r 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 (631)
Q Consensus 121 ~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~ 165 (631)
++. ..++++.+.|...|.+.|+|.+.|.+.+|.++..+++.
T Consensus 78 ~ia----~~n~~s~~~~~~~L~~~G~~~~~~r~~ir~qil~~klr 118 (118)
T pfam09312 78 RIA----QQNNMTLDQLRAALAADGLSYDEFREQIRKEMLISRLR 118 (118)
T ss_pred HHH----HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999----88598999999999984999999999999999999709
No 15
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family; InterPro: IPR014274 Proteins in this entry include EpsD from Methylobacillus sp. 12S and belong to the peptidyl-prolyl cis-trans isomerase family. They are located at loci associated with exopolysaccharide biosynthesis and are encoded near a homologue of EpsH (IPR013426 from INTERPRO)..
Probab=99.63 E-value=1e-13 Score=107.44 Aligned_cols=223 Identities=16% Similarity=0.234 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998313101036788842899998784899999999999999998708899-978998601389999999
Q gi|254781158|r 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-NSERARSVGLDKKILDNL 93 (631)
Q Consensus 15 ~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~-~~~~~~~~~l~~qvl~~l 93 (631)
.+|+++++++++ |++.---..+.+.++|+|||.+||.++.+..|++.- .... +|+++ ..++.++|++|
T Consensus 3 ~~~~~ll~~~La--~C~~~~~~~~asQVAA~VNG~EIsv~QlNy~l~r~p-------~~~~~~PEda--~~~r~~~Ld~L 71 (236)
T TIGR02925 3 SVLLVLLVGALA--ACGEKEAKESASQVAAKVNGKEISVHQLNYALQRIP-------NLGADSPEDA--ARARRQVLDRL 71 (236)
T ss_pred HHHHHHHHHHHH--CCCCHHCCCCCCCEEEEECCEECCHHHHHHHHHHCC-------CCCCCCCHHH--HHHHHHHHHHH
T ss_conf 578769998751--244001027888538888682111889999997144-------6788870215--89999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999849824889999999634765542102398999999986110056776788877544455543014542
Q gi|254781158|r 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 (631)
Q Consensus 94 i~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~ 173 (631)
|++.|+.+.|.++++.=|. +|...|.+. |+++...-+...+
T Consensus 72 Vdqel~~~kA~E~KLDRsP-~V~~A~~~A---------------------------------~r~IlArAYl~~~----- 112 (236)
T TIGR02925 72 VDQELVVEKALEEKLDRSP-DVVMALEAA---------------------------------KREILARAYLEQL----- 112 (236)
T ss_pred HHHHHHHHHHHHHCCCCCH-HHHHHHHHH---------------------------------HHHHHHHHHHHHH-----
T ss_conf 9999999998860046785-789999998---------------------------------8989999999987-----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 20022233455432111233321000012345678988999997656665554544332222110000000125788999
Q gi|254781158|r 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 (631)
Q Consensus 174 ~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei 253 (631)
..+...||++|+++||++|+..|-.-.-+.
T Consensus 113 ----------------------------~g~~~~Ps~~e~~~Y~~~HP~LFA~RK~Y~---------------------- 142 (236)
T TIGR02925 113 ----------------------------VGAQSKPSPEEIKEYFQEHPELFAERKLYN---------------------- 142 (236)
T ss_pred ----------------------------HCCCCCCCHHHHHHHHHHHHHHHHHCCCCC----------------------
T ss_conf ----------------------------447988788889888610056676066311----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHH-CCCC-CCCCCCCCHHHCCCHHHHHHH
Q ss_conf 8755554555433211237887530--00014788875303651478877520-1123-652453162322675677764
Q gi|254781158|r 254 QAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQG-KSLS-DISLGSFSKEYIPDVSLADSI 329 (631)
Q Consensus 254 ~~~Y~~~~~~f~~pe~~~~~~i~~~--~~~~A~~~~~~l~~g~~F~~la~~~~-~~~~-~~~lg~~~~~~~~~~~~~~a~ 329 (631)
+..|.|+ .....+++.+.+.+|....++++..- .+.. ....-..+-+++| .++...+
T Consensus 143 ------------------lqEi~~pG~~~~~~d~Lr~~~~~~k~L~d~~~WLKa~~~~f~~~~~~r~AEQ~P-~~~L~~l 203 (236)
T TIGR02925 143 ------------------LQEIALPGPDKELLDELRAMVENSKPLEDILAWLKAKNVKFKASSAARSAEQLP-AEILAKL 203 (236)
T ss_pred ------------------HHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHCCC-HHHHHHH
T ss_conf ------------------111441597820358999997538887789999704898302353236601146-5665784
Q ss_pred HCCCCCCCEEEEEEECCCC-HHHHHCCCCC
Q ss_conf 2023667225678617721-1211023330
Q gi|254781158|r 330 FSLAKKGDFTPVIHGSFGY-VIAHVSNIKP 358 (631)
Q Consensus 330 f~l~~~G~is~pv~t~~G~-~iikv~~~~~ 358 (631)
-.| ++|.. -++.++.++ ||++|.+-.+
T Consensus 204 ~~l-k~G~~-l~~~~p~~~s~~~~~~~aq~ 231 (236)
T TIGR02925 204 AKL-KDGAV-LVVQGPNNVSLILRVADAQA 231 (236)
T ss_pred HCC-CCCCE-EEEECCCCEEEEEEEECCCC
T ss_conf 428-97824-88877887379877400002
No 16
>pfam00639 Rotamase PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalysing the interconversion of cis-proline and trans-proline.
Probab=99.42 E-value=6.7e-14 Score=108.61 Aligned_cols=75 Identities=31% Similarity=0.607 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHCCCC-HHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 00014788875303651-47887752011----23652453162322675677764202366722567861772112110
Q gi|254781158|r 279 NQKEADEAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~-F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv 353 (631)
+++.|++++.+|++|++ |+++|+++|.+ .+||++||+..+.++ ++|.+++|++ ++|+||+||+|++||||+||
T Consensus 16 a~~~a~~i~~~i~~g~~~F~~la~~~S~d~~s~~~gG~lG~~~~~~l~-~~~~~~~~~l-~~G~is~pi~s~~G~hIikl 93 (95)
T pfam00639 16 AKAKAEEILEQLQSGEDTFAELAREYSDDCPSAANGGDLGWFTRGQLP-PEFEDAVFSL-KEGEISGPVKTPFGYHIIKV 93 (95)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCC-HHHHHHHHCC-CCCCCCCCEEECCEEEEEEE
T ss_conf 999999999999919207999999838874532458662211588886-5699997346-76537888897998899999
Q ss_pred CC
Q ss_conf 23
Q gi|254781158|r 354 SN 355 (631)
Q Consensus 354 ~~ 355 (631)
.+
T Consensus 94 ~d 95 (95)
T pfam00639 94 TD 95 (95)
T ss_pred EC
T ss_conf 69
No 17
>KOG3258 consensus
Probab=99.19 E-value=4.6e-12 Score=96.60 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCCCCCCHHHCCCHHHHHHHHCCCCCC------CEE
Q ss_conf 1123788753000014788875303651478877520112--36524531623226756777642023667------225
Q gi|254781158|r 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKG------DFT 339 (631)
Q Consensus 268 e~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~--~~~~lg~~~~~~~~~~~~~~a~f~l~~~G------~is 339 (631)
.-++++||+-...-.+.+++++|++|..|+++|.+||.+. ++|||||++++.|..| |.+++|+|+ ++ ..+
T Consensus 38 taVKvRHiLCEKqGKi~EA~eKLk~G~~F~evAA~YSEdkar~GGDLGW~~RG~MvGP-FQdaAFalp-vs~~~~pv~Td 115 (133)
T KOG3258 38 TAVKVRHILCEKQGKINEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQDAAFALP-VSTVDKPVYTD 115 (133)
T ss_pred CEEEEEEEEEHHHCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCC-HHHHHHCCC-CCCCCCCCCCC
T ss_conf 3688777521110669999999873350689999863172003785353455632362-254453166-56567763148
Q ss_pred EEEEECCCCHHHHHCCC
Q ss_conf 67861772112110233
Q gi|254781158|r 340 PVIHGSFGYVIAHVSNI 356 (631)
Q Consensus 340 ~pv~t~~G~~iikv~~~ 356 (631)
+||+|.||||||.|..+
T Consensus 116 pP~KtkfGYHiImvEGr 132 (133)
T KOG3258 116 PPVKTKFGYHIIMVEGR 132 (133)
T ss_pred CCCCCCCCEEEEEECCC
T ss_conf 98312332589985266
No 18
>KOG3259 consensus
Probab=99.08 E-value=2.5e-11 Score=91.79 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHH-----------------HHHHHH----HHHHHHHCC-CCHHHHHHHHH---CCCCCCCCCCCCHHHC
Q ss_conf 3211237887530-----------------000147----888753036-51478877520---1123652453162322
Q gi|254781158|r 266 SPEIRTVEQLVFP-----------------NQKEAD----EAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYI 320 (631)
Q Consensus 266 ~pe~~~~~~i~~~-----------------~~~~A~----~~~~~l~~g-~~F~~la~~~~---~~~~~~~lg~~~~~~~ 320 (631)
.|++++.+||+++ ++++|- .....|..| .+|.+||+++| ++-.||+||+|.+++|
T Consensus 51 ~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgqM 130 (163)
T KOG3259 51 EPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQM 130 (163)
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCC
T ss_conf 85202677788724667787532343220139999999987688760574328999875347133234776554354232
Q ss_pred CCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 675677764202366722567861772112110
Q gi|254781158|r 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 (631)
Q Consensus 321 ~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv 353 (631)
-. +|++|+|+| ++|++|+||.|+.|+|||+-
T Consensus 131 qk-~FEdaafaL-~~ge~SgiV~t~SG~HiI~R 161 (163)
T KOG3259 131 QK-PFEDAAFAL-KVGEMSGIVDTDSGVHIIYR 161 (163)
T ss_pred CC-CCHHHHHHC-CCCCCCCCEECCCCEEEEEE
T ss_conf 45-301012202-55641672216985389885
No 19
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.00 E-value=1.5e-08 Score=73.58 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEEEEC
Q ss_conf 7654201100124554085320013444112345654-322111116888875311234677651113697499999802
Q gi|254781158|r 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK-EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 (631)
Q Consensus 392 ~d~~~~g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~ 470 (631)
...+..|.+|.++|+.+..-..... .|.+ .|. ........++....+|+...+ +.+.|+.++.| |.+++|++
T Consensus 214 ~~~l~~G~dF~~lAk~~S~D~~s~~----~gGd-LG~~~~~~~~~~~~f~~a~f~Lk~G-eiS~pV~t~~G-yhIIkl~~ 286 (336)
T PRK00059 214 KKRLDKGEDFAKVAKEVSQDPGSKD----KGGD-LGDVPYSDSNYDKEFMDAAKALKEG-EISAPVKTQFG-YHIIKAIK 286 (336)
T ss_pred HHHHHCCCCHHHHHHHHCCCCCCCC----CCCC-CCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCEEECCE-EEEEEEEE
T ss_conf 9998779988999998489953101----4886-6640267665566899999745688-86886066886-79999972
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322334667888999999999999999999999999999
Q gi|254781158|r 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 (631)
Q Consensus 471 ~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~a~~~~~~ 509 (631)
+.|+..+||++||++|...+..+++.+...+.++++..+
T Consensus 287 ~~~~~~~~feevk~~I~~~L~~qK~~~~~~e~~~~l~~~ 325 (336)
T PRK00059 287 KKEYPVKPFDSVKEQIKKQLLQEKQSEVFKKKIEEWKKD 325 (336)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 157889999999999999999999999999999999973
No 20
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=98.67 E-value=4.9e-06 Score=57.24 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=80.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf 99999999836999789898639814402---562226554235798999998616888720345169956999997058
Q gi|254781158|r 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 (631)
Q Consensus 503 a~~~~~~~~~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~ 579 (631)
|.++..++ ..|.+|+++|+.+.....+. +.+.+. ..+.+++++..++|.++.|+++ .|+....+|.|+++++.
T Consensus 146 Ak~i~~~l-~~G~dF~~lAk~~S~D~~s~~~GG~lg~~--~~~~~~~~f~~aaf~Lk~geiS-~Pvkt~~GyhIIk~~~k 221 (287)
T PRK03095 146 AKKVKEEL-GQGKSFEELAKQYSEDTGSKEKGGDLGFF--GPGKMVKEFEDAAYKLKKDEVS-EPVKSQFGYHIIKVTDI 221 (287)
T ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCCHHHCCCCCCCC--CCCCCHHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEEEC
T ss_conf 99999999-87998999999967996502039715657--9876259999999728999858-86760883599998414
Q ss_pred CCC--CHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 788--9878-999999999999999--999999999988298136899988645
Q gi|254781158|r 580 KVG--PVQE-KDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLD 628 (631)
Q Consensus 580 ~~~--~~~~-~~~~~~~l~~~~~~~--~~~~~~~~Lr~~a~I~iN~~~l~~~~~ 628 (631)
... +.++ ..+++.++.+...++ ..+..+..+.++|+|+|+.+-|..+|.
T Consensus 222 ~~k~~~~~~~K~~lk~~i~~~k~~D~~~~~~vi~k~lkkanV~ikD~~lk~~~~ 275 (287)
T PRK03095 222 KEPEKSFEQSKADIKKELVQKKAQDGEFMNDLMMKEIKKADVKVDDKDLKDLFE 275 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 788999899999999999999864769999999999997798615389999998
No 21
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=98.62 E-value=3e-06 Score=58.61 Aligned_cols=122 Identities=16% Similarity=0.262 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf 99999999836999789898639814402---562226554235798999998616888720345169956999997058
Q gi|254781158|r 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 (631)
Q Consensus 503 a~~~~~~~~~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~ 579 (631)
|+++..++ +.|.+|..+|+.+.....+. +.+.+. ..+.+++++..++|+++.|+++. |.....+|.|+++++.
T Consensus 150 A~~v~~~l-~~G~dF~~lAk~~S~D~~s~~~GG~lg~~--~~~~~~~ef~~aaf~L~~GeiS~-pv~t~~GyhIIk~~dk 225 (285)
T PRK03002 150 AKEIKKKL-DAGASFEELAKQESQDLLSKEKGGDLGYF--NSGRMAPEFETAAYKLKVGQISN-PVKSPNGYHIIKLTDK 225 (285)
T ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCCHHHCCCCCCCC--CCCCCCHHHHHHHHHCCCCCCCC-CEEECCEEEEEEEEEC
T ss_conf 99999998-87999999999968993010048616635--89876679999998289988687-8774781699998416
Q ss_pred CC-CCHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 78-89878-999999999999999--999999999988298136899988645
Q gi|254781158|r 580 KV-GPVQE-KDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLD 628 (631)
Q Consensus 580 ~~-~~~~~-~~~~~~~l~~~~~~~--~~~~~~~~Lr~~a~I~iN~~~l~~~~~ 628 (631)
.. .+.++ +++++.++.+....+ ..+.++..|.++|+|+|+.+-|..++.
T Consensus 226 ~~~~~~~~~k~~i~~~i~~~k~~d~~~~~~~i~k~~kkanV~ikD~~lk~~~~ 278 (285)
T PRK03002 226 KDLKPYDEVKDSIRKNLEEERIADPIFGKKLLQKELKKANIKINDSELKDTFT 278 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 88999899999999999999866779999999999987898436478888988
No 22
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=98.54 E-value=4.7e-06 Score=57.39 Aligned_cols=125 Identities=17% Similarity=0.294 Sum_probs=86.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEECC---CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf 999999998369997898986398144025---62226554235798999998616888720345169956999997058
Q gi|254781158|r 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTN---QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 (631)
Q Consensus 503 a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~---~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~ 579 (631)
|++++.++ +.|.+|..+|+.+.....+.. .+.+-+...+.+++++..++|+++.|+++..|+....+|.|+++++.
T Consensus 158 A~~v~~~l-~~G~dF~~lAk~~S~D~~sk~~GG~Lg~f~~~~~~m~~~f~~aaf~Lk~geis~~PvkT~~GYhIIK~~~~ 236 (298)
T PRK04405 158 AETVIKKL-KDGKDFAKLAKKYSTDTATKNKGGKLPAFDSTDTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIKH 236 (298)
T ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEECC
T ss_conf 99999998-78997899999838898655568625404079986176999999748899816884521673399998345
Q ss_pred CC-CCHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 78-89878-9999999999999--99999999999988298136899988645
Q gi|254781158|r 580 KV-GPVQE-KDKFISYLTQMMN--KDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 (631)
Q Consensus 580 ~~-~~~~~-~~~~~~~l~~~~~--~~~~~~~~~~Lr~~a~I~iN~~~l~~~~~ 628 (631)
.. ++.++ .++++.++.+... ....+..+..+.++|+|+|...-|..+|+
T Consensus 237 ~~k~~~~~~K~~l~~~i~~~k~~D~~~~~~vi~k~lk~anVkikD~~lk~~l~ 289 (298)
T PRK04405 237 PAKGKFTDHKKELTKQIYAKWASDSTVMQNVISKVLKKANVSIKDKDLKDALS 289 (298)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 77798899999999999998730879999999999997798715689999999
No 23
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=98.51 E-value=1.1e-05 Score=55.06 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=60.8
Q ss_pred HCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCCCCC-CHHH-
Q ss_conf 36999789898639814402---562226554235798999998616888720345169956999997058788-9878-
Q gi|254781158|r 512 KEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQE- 586 (631)
Q Consensus 512 ~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~- 586 (631)
+.|.+|+.+|+.+.....+. +.+.+. ..+.+.+++-.++|.++.|.++ .|+....+|.|++|++.... +.++
T Consensus 156 ~~G~dF~~lAk~yS~D~~s~~~GG~Lg~~--~~g~~~~~f~~Aaf~L~~G~vS-~PVkt~~GyHIIkv~dk~~~~~~~~~ 232 (283)
T PRK02998 156 NNGEDFAALAKQYSEDTGSKEQGGEISGF--APGQTVKEFEEAAYKLDAGQVS-EPVKTTYGYHIIKVTDKKELKPFDEV 232 (283)
T ss_pred HCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEECCCCCCCHHHH
T ss_conf 77998999999958996644358866767--9998078999999759999948-87787886799998016889999999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 999999999999999----999999999988298136899988645
Q gi|254781158|r 587 KDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRYLD 628 (631)
Q Consensus 587 ~~~~~~~l~~~~~~~----~~~~~~~~Lr~~a~I~iN~~~l~~~~~ 628 (631)
.++++.+|.+...++ +.+..+..+.++|+|+|..+-|..+|.
T Consensus 233 K~~l~~~i~~~k~~d~~~~~~~~vi~~~lkkanV~ikD~~lk~~~~ 278 (283)
T PRK02998 233 KDSIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKDTFK 278 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999999997554789999999999987798766388899999
No 24
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=98.39 E-value=8.2e-05 Score=49.25 Aligned_cols=125 Identities=22% Similarity=0.226 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEE-----ECCCCCEEEEEEE
Q ss_conf 99999999983699978989863981440256222655423579899999861688872034-----5169956999997
Q gi|254781158|r 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKV 576 (631)
Q Consensus 502 ~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~-----~~~~~~~~~v~~v 576 (631)
.|.+++.++...|.+|..+|+........-+.+.+ +.....+|.++..++|.+..|+++.+ |.....+|.|+++
T Consensus 158 ~Ak~vi~~l~a~G~dFa~lAKe~St~k~~GG~l~f-~~~~~~~~~~f~~AAfkLk~gevS~~v~t~~p~~~q~gYhIIK~ 236 (310)
T PRK01326 158 KAKSVLEEAKAEGADFAQIAKEKTTTKEKKVEYKF-DSGATNVPTDVKKAAFSLDEGGVSDVISVLDPTSYQKKYYIVKV 236 (310)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEE
T ss_conf 89999999863787489998652578556973454-78998076999999870668984661124787655540699997
Q ss_pred CCCCC--CCHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 05878--89878-999999999999999--99999999998829813689998864
Q gi|254781158|r 577 TNSKV--GPVQE-KDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 (631)
Q Consensus 577 ~~~~~--~~~~~-~~~~~~~l~~~~~~~--~~~~~~~~Lr~~a~I~iN~~~l~~~~ 627 (631)
++... ++.++ .++++.++.+....+ ..+..+..+.++++|+|...-|..+|
T Consensus 237 ~~k~eK~~~~~~~K~~lk~~i~~~k~~D~~~~~~vi~k~lKkanVkIkDkdlk~~l 292 (310)
T PRK01326 237 TKKTEKKSDWQDYKKRLKAIILAQKSKDMNFQNKVIAKALDKANVKIKDKAFANIL 292 (310)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 36766677789999999999999862277999999999999769873618899999
No 25
>PRK12450 foldase protein PrsA; Reviewed
Probab=98.33 E-value=0.00012 Score=48.10 Aligned_cols=126 Identities=16% Similarity=0.142 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEE-----ECCCCCEEEEEEE
Q ss_conf 99999999983699978989863981440256222655423579899999861688872034-----5169956999997
Q gi|254781158|r 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKV 576 (631)
Q Consensus 502 ~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~-----~~~~~~~~~v~~v 576 (631)
.|+++..++...|.+|..+|+.......+-+.... +...+.++.++..++|.+..|+++.. |+....+|.|+++
T Consensus 161 tAk~V~~~l~a~G~dFa~LAKe~St~~~~k~~~~f-d~~~~~~~~ef~~AAfkLk~GevS~~i~~~~Pvkt~~GYhIIK~ 239 (309)
T PRK12450 161 DAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTF-DSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKV 239 (309)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 79999999864786589998772456556887677-77897562899999871668871442236887201576389998
Q ss_pred CCCC-C-CC-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 0587-8-89-878999999999999999--999999999988298136899988645
Q gi|254781158|r 577 TNSK-V-GP-VQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLD 628 (631)
Q Consensus 577 ~~~~-~-~~-~~~~~~~~~~l~~~~~~~--~~~~~~~~Lr~~a~I~iN~~~l~~~~~ 628 (631)
++.. . ++ .+..+.++.++.+...++ +.+..+..+.++++|+|...-|..+|.
T Consensus 240 t~k~eK~~~~~~~K~~lk~~i~~~k~~d~~~~~~vi~k~lKkanVkIkDkdlk~~l~ 296 (309)
T PRK12450 240 TKKATKKADWKAYQKRLKDIIVTGKLKDPDFQNKVIAKALDKANVKIKDKAFANILA 296 (309)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 157554566899999999999998712879999999999997798767588999999
No 26
>PRK01490 tig trigger factor; Provisional
Probab=96.71 E-value=0.043 Score=31.50 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=16.5
Q ss_pred ECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8489999999999999999870
Q gi|254781158|r 50 KVPFSSFINSWKQELGMISQKI 71 (631)
Q Consensus 50 ~I~~~~f~~~~~~~~~~~~~~~ 71 (631)
.|+..++...++..+..++.+.
T Consensus 18 ~v~~~~~~~~~~~~~~~~~k~~ 39 (435)
T PRK01490 18 TVPAEEIEKAVDKALKKLAKTV 39 (435)
T ss_pred EECHHHHHHHHHHHHHHHHCCC
T ss_conf 9989999999999999986528
No 27
>pfam00639 Rotamase PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalysing the interconversion of cis-proline and trans-proline.
Probab=95.84 E-value=0.062 Score=30.42 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEE
Q ss_conf 9999999999999836999789898639814402---5622265542357989999986168887203451699569999
Q gi|254781158|r 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 (631)
Q Consensus 498 ~~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~ 574 (631)
.++.+|+++...+.++..+|+.+|..+.....+. +.+.+.. ...+++++...+|.+++|+++ .|.....+|.|+
T Consensus 15 ~a~~~a~~i~~~i~~g~~~F~~la~~~S~d~~s~~~gG~lG~~~--~~~l~~~~~~~~~~l~~G~is-~pi~s~~G~hIi 91 (95)
T pfam00639 15 AAKAKAEEILEQLQSGEDTFAELAREYSDDCPSAANGGDLGWFT--RGQLPPEFEDAVFSLKEGEIS-GPVKTPFGYHII 91 (95)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEECCCC--CCCCCHHHHHHHHCCCCCCCC-CCEEECCEEEEE
T ss_conf 99999999999999192079999998388745324586622115--888865699997346765378-888979988999
Q ss_pred EEC
Q ss_conf 970
Q gi|254781158|r 575 KVT 577 (631)
Q Consensus 575 ~v~ 577 (631)
+|.
T Consensus 92 kl~ 94 (95)
T pfam00639 92 KVT 94 (95)
T ss_pred EEE
T ss_conf 996
No 28
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=95.35 E-value=0.12 Score=28.63 Aligned_cols=242 Identities=16% Similarity=0.160 Sum_probs=135.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHH---HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 210239899999998611005677678887754445554-3014542200222334---554321112333210000123
Q gi|254781158|r 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQA---KRFYFENRSVDYIVLNNRHVP 203 (631)
Q Consensus 128 ~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~---~~~~~~~r~i~~~~~~~~~~~ 203 (631)
..++.+.+.+.++-+.-+ |+....+-+.. .-..++.++|..++.. ....++.+.---..++..
T Consensus 15 ~~~~L~~~~~~~~~~~~~----------RQ~~~E~Av~~~~~~~~~~i~p~~le~~Wahiasryes~~~L~~~L~~~--- 81 (270)
T TIGR02933 15 EPAELSPDQLQQFEQAWQ----------RQRHIEQAVVEAADESAVDIPPSLLEEVWAHIASRYESAQALAAELDEQ--- 81 (270)
T ss_pred CCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH---
T ss_conf 867889877899999998----------7789999999736522464788889999999873156778999871330---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4567898899999765666555454433222----21100000001-257889998755554555433211237887530
Q gi|254781158|r 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISY----ILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 (631)
Q Consensus 204 ~~~~~td~el~~yy~~nk~~f~~pe~~~i~y----v~~~~~~~~~~-~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~ 278 (631)
.|..+++..+=- +..-.+.+... -.+++.+|..||-.|-..|..||+|--+||++.
T Consensus 82 -------------------~l~A~~~~a~l~h~~~l~~~L~~v~~q~p~p~~a~V~~wY~~Ha~~F~rPeQrltrHLLlT 142 (270)
T TIGR02933 82 -------------------ELAAAEREALLAHHVRLEAQLASVAEQAPQPDDAEVEAWYRRHAEQFVRPEQRLTRHLLLT 142 (270)
T ss_pred -------------------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEE
T ss_conf -------------------4893017999999999999999997058999603588998886740577134422233201
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCC
Q ss_conf 00014788875303651478877520112365245316232267567776420236672256786177211211023330
Q gi|254781158|r 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~F~~la~~~~~~~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~ 358 (631)
+. +++|+. + +
T Consensus 143 v~-------------------------------------edfPen-----------~---------------------~- 152 (270)
T TIGR02933 143 VN-------------------------------------EDFPEN-----------D---------------------R- 152 (270)
T ss_pred CC-------------------------------------CCCCCC-----------C---------------------C-
T ss_conf 15-------------------------------------877988-----------8---------------------1-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 13445543223333456799998888865565776542011001245540853200134441123456543221111168
Q gi|254781158|r 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 (631)
Q Consensus 359 ~~~~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d~~~~g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (631)
+.|+.+|...++.=+ .+..-|-..|.++.. .|+-. +.+..|....|+.+ ++
T Consensus 153 ------eAv~~ri~al~rrL~----------------~~~~~FA~~A~rhS~-----CPtAl-~gG~LGWv~RG~LY-p~ 203 (270)
T TIGR02933 153 ------EAVRERILALLRRLR----------------AKRAAFAELAERHSH-----CPTAL-EGGLLGWVSRGLLY-PQ 203 (270)
T ss_pred ------HHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHCC-----CCCHH-CCCCEEEECCCCCC-HH
T ss_conf ------789999999998746----------------885678999876277-----86202-27820443077666-00
Q ss_pred HHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887531123467765111369749999980232233466788899999999999999999999
Q gi|254781158|r 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 (631)
Q Consensus 439 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~ 502 (631)
+=..+|....+ ..|.+++.+-|..+ ..=..|-|+.+++.+++=..+...+...+.+..=+.-
T Consensus 204 Ld~aLF~L~~G-~LS~~~es~lGwHl-L~CE~irp~~pl~~~~aL~~~rd~L~~r~q~~~QRqW 265 (270)
T TIGR02933 204 LDAALFQLAEG-ELSAPIESELGWHL-LLCEAIRPARPLEKEEALERARDRLLLRQQKEYQRQW 265 (270)
T ss_pred HHHHHHHHHCC-CCCCCHHCHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999998606-88860111014677-8753048656789878989999999999988867799
No 29
>pfam05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus. In the E. coli cytosol, a fraction of the newly synthesized proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent p
Probab=95.30 E-value=0.19 Score=27.24 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998498248899999996347-6554---2102398999999986110056776788877544455
Q gi|254781158|r 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP-LFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 (631)
Q Consensus 89 vl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p-~Fq~---~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l 164 (631)
.....+...++....+...+.+++..|...+.++- .+.. ..| .+ +..++...|.+++.|.+.++......-.
T Consensus 20 ~~~~~~~~~i~~~L~~~~~~evP~~~v~~e~~~~~~~~~~~~~~~g-~~---~e~~~~~~~~~~e~~~~~~~~~A~~~vk 95 (162)
T pfam05698 20 ATAEELKEAILDKLVENAEIELPESLVEEEIDRLLRQFLQQLQGQG-LD---LEEYLSLSGSSEEELREEFKEEAEKRVK 95 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CC---HHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998788999999999999999999999987669-98---8888765256478887888999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 54301454220022233455432111233321000012345678988999997656665554544332222110000000
Q gi|254781158|r 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 (631)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~ 244 (631)
...+...+ .-...+.||++++.+++.+....|..
T Consensus 96 ~~lil~~I----------------------------a~~e~i~vs~eev~~~i~~~a~~~~~------------------ 129 (162)
T pfam05698 96 LGLILEEI----------------------------AKEEKIEVTDEEIKEEIEELASQYGM------------------ 129 (162)
T ss_pred HHHHHHHH----------------------------HHHCCCCCCHHHHHHHHHHHHHHCCC------------------
T ss_conf 99999999----------------------------98808998999999999999988699------------------
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 12578899987555545
Q gi|254781158|r 245 KIEISNDELQAEYEKNK 261 (631)
Q Consensus 245 ~~~vt~~ei~~~Y~~~~ 261 (631)
+.++++.+|..+.
T Consensus 130 ----~~~~i~~~~~~~~ 142 (162)
T pfam05698 130 ----EPEEVKEFYKKNE 142 (162)
T ss_pred ----CHHHHHHHHHCCH
T ss_conf ----9999999997555
No 30
>pfam05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus. In the E. coli cytosol, a fraction of the newly synthesized proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent p
Probab=94.63 E-value=0.29 Score=26.06 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=71.0
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCCC-CCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 848999999999999999987088-999789----------986013899999999999999999984982488999999
Q gi|254781158|r 50 KVPFSSFINSWKQELGMISQKIGF-VVNSER----------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 (631)
Q Consensus 50 ~I~~~~f~~~~~~~~~~~~~~~g~-~~~~~~----------~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~ 118 (631)
+|+..-....++.....+.+++++ +.+++. .....++.++-.++-...++..-|+.-+|.||+++|...
T Consensus 40 evP~~~v~~e~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~e~~~~~~~~~A~~~vk~~lil~~Ia~~e~i~vs~eev~~~ 119 (162)
T pfam05698 40 ELPESLVEEEIDRLLRQFLQQLQGQGLDLEEYLSLSGSSEEELREEFKEEAEKRVKLGLILEEIAKEEKIEVTDEEIKEE 119 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999999999999987669988888765256478887888999999999999999999880899899999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96347655421023989999999861100567767888775444555430
Q gi|254781158|r 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 (631)
Q Consensus 119 i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~ 168 (631)
|..+- .....+.+.+..++..+|. ...++..+...+....+
T Consensus 120 i~~~a----~~~~~~~~~i~~~~~~~~~-----l~~l~~~ll~~K~~d~l 160 (162)
T pfam05698 120 IEELA----SQYGMEPEEVKEFYKKNEQ-----LSALKEDLLEEKAVDLL 160 (162)
T ss_pred HHHHH----HHCCCCHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHH
T ss_conf 99999----8869999999999975556-----99999999999999997
No 31
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=93.80 E-value=0.13 Score=28.29 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHH
Q ss_conf 906887640226899999999999998313101036788842899998784899
Q gi|254781158|r 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54 (631)
Q Consensus 1 Ml~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~ 54 (631)
|+..||...+-.++..++.-++-++++||++..+|.....-.+.+++|+.|--+
T Consensus 1 M~k~l~~al~~~l~~~vl~G~~YPl~vtgiaq~~fp~qAnGSli~~~G~vvGS~ 54 (195)
T PRK00315 1 MMKGLRPALVLFLFLLLITGGAYPLLTTGLGQWWFPWQANGSLIRDDGKVRGSA 54 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEHHHH
T ss_conf 958899999999999999999999999999998675658887570799972138
No 32
>pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.
Probab=86.57 E-value=1.5 Score=21.47 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=32.4
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHH
Q ss_conf 06887640226899999999999998313101036788842899998784899
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~ 54 (631)
|..+|...+..++..++--++-++++||++..+|.....-.+.+++|+.|.-.
T Consensus 1 mk~l~~al~~~~~~~vl~G~~YPl~vtgiaq~~fp~qAnGSli~~~g~vvGS~ 53 (188)
T pfam02669 1 IRNLVPALRSTALLWIITGLVYPLIVTVIGQLVFPYQANGSLITDSGQVVGSA 53 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEH
T ss_conf 91589999999999999999999999999977563558867683899996543
No 33
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=82.93 E-value=2.8 Score=19.62 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=18.7
Q ss_pred HCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 40226899999999999998313
Q gi|254781158|r 8 ASRTWVAKIFLVVLFVPFLIWGL 30 (631)
Q Consensus 8 ~~~s~~~~ii~~l~~~~f~~~g~ 30 (631)
..+++++.|+|-+|++++++||.
T Consensus 11 l~raiiiSv~LHiiLi~lLIwgS 33 (402)
T PRK09510 11 LKRAIIISAVLHIILFALLIWSS 33 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78899999999999999999800
No 34
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=80.34 E-value=3.5 Score=19.03 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=23.6
Q ss_pred CHHHCCCHHHHHHHHCCCCCCCEEEE-EEECCCCHHH
Q ss_conf 62322675677764202366722567-8617721121
Q gi|254781158|r 316 SKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIA 351 (631)
Q Consensus 316 ~~~~~~~~~~~~a~f~l~~~G~is~p-v~t~~G~~ii 351 (631)
..+.|. |.|++.+-++ +.|+.-.+ +.-+-.||--
T Consensus 190 Gs~~fi-pgFe~~LvG~-k~Ge~k~i~vtFP~~y~a~ 224 (441)
T COG0544 190 GSGRFI-PGFEDQLVGM-KAGEEKDIKVTFPEDYHAE 224 (441)
T ss_pred CCCCCH-HHHHHHHCCC-CCCCEEEEEEECCCCCCHH
T ss_conf 078744-4288641368-5797568988716653066
No 35
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=72.40 E-value=5.6 Score=17.64 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=31.2
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEE-ECCEECCHH
Q ss_conf 906887640226899999999999998313101036788842899-998784899
Q gi|254781158|r 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFS 54 (631)
Q Consensus 1 Ml~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~-V~g~~I~~~ 54 (631)
|+..+|......++..++--++-+++..|++..+|.....-...+ .+|+.+.-.
T Consensus 1 m~~~lr~Al~~~~~l~li~G~iYPl~~t~igq~~Fp~QAnGSli~~~dg~vvGS~ 55 (190)
T COG2156 1 MMRQLRPALVLTLVLLLITGLIYPLLVTGIGQAAFPNQANGSLIRDGDGKVVGSA 55 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEHH
T ss_conf 9236789999999999999998889999999885723368976676899484045
No 36
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=71.19 E-value=6 Score=17.46 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 0226899999999999998313
Q gi|254781158|r 9 SRTWVAKIFLVVLFVPFLIWGL 30 (631)
Q Consensus 9 ~~s~~~~ii~~l~~~~f~~~g~ 30 (631)
.+++++.++|-+|++++++||-
T Consensus 12 ~~AiiiS~vLH~iLfalLIwgS 33 (387)
T COG3064 12 KRAIIISAVLHIILFALLIWGS 33 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2377699999999999999830
No 37
>PRK03427 cell division protein ZipA; Provisional
Probab=69.90 E-value=5.4 Score=17.75 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.8
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 90688764022689999999999999831310
Q gi|254781158|r 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD 32 (631)
Q Consensus 1 Ml~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~ 32 (631)
||+-||- ++.||-+|+|++.++-|+|.
T Consensus 1 mMqdLRl-----iLIIvGaIAIiALL~HGlWt 27 (331)
T PRK03427 1 MMQDLRL-----ILIIVGAIAIIALLVHGFWT 27 (331)
T ss_pred CCHHHHH-----HHHHHHHHHHHHHHHHHCEE
T ss_conf 9358899-----99999999999999852022
No 38
>TIGR02794 tolA_full protein TolA; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB..
Probab=63.97 E-value=6.6 Score=17.18 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHC
Q ss_conf 22689999999999999831
Q gi|254781158|r 10 RTWVAKIFLVVLFVPFLIWG 29 (631)
Q Consensus 10 ~s~~~~ii~~l~~~~f~~~g 29 (631)
+++++-|+|-+++|.|++||
T Consensus 2 ~a~~~s~~lH~~l~~~L~~~ 21 (452)
T TIGR02794 2 RAFLLSVLLHILLLGLLILG 21 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999971
No 39
>PTZ00183 centrin; Provisional
Probab=62.41 E-value=8.9 Score=16.34 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999849824889999999634765542102398999999986
Q gi|254781158|r 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631)
Q Consensus 98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631)
=+.+..+.+|+.+++.+|...+...- .+.+|..+-+.|..++..
T Consensus 48 El~~~L~~lG~~~t~~el~~i~~~~D--~d~~g~I~f~eF~~~~~~ 91 (168)
T PTZ00183 48 ELKVAMRALGFEPKKEEIKRMIADVD--KDGSGSIDFNEFLEIMTK 91 (168)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCC--CCCCCCEEHHHHHHHHHH
T ss_conf 99999999089999999999998628--789984519999999999
No 40
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=59.80 E-value=9.8 Score=16.08 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 26899999999999998313
Q gi|254781158|r 11 TWVAKIFLVVLFVPFLIWGL 30 (631)
Q Consensus 11 s~~~~ii~~l~~~~f~~~g~ 30 (631)
.|+++.++.+++++|++|..
T Consensus 4 ~r~~~~~~~~~v~~~~~WA~ 23 (434)
T TIGR01843 4 ARLITWLIALLVVIFLLWAA 23 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 79889999999999999888
No 41
>TIGR03076 near_not_gcvH Chlamydial GcvH homolog upstream region protein. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed so far only in the Chlamydiae, always as part of a two-gene operon, upstream of the homolog of GcvH. Its function is unknown.
Probab=58.87 E-value=10 Score=15.95 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=65.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH-HCCCHH-HC-CCCCCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 6887640226899999999999998-313101-03-67888428999987848999999999999999987088999789
Q gi|254781158|r 3 EIIRKASRTWVAKIFLVVLFVPFLI-WGLSDA-LF-SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 (631)
Q Consensus 3 ~~iR~~~~s~~~~ii~~l~~~~f~~-~g~~~~-~~-~~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~ 79 (631)
..+-+|.+-+++.+|.++++.++-+ ||-... .. +|++..+.-++.|.+.|..||....+-..+....-.|.+-.=.-
T Consensus 2 afF~khqkkfiglVI~gVcvsgigvg~G~~~~~~s~~gs~ktvf~tp~Gkkyse~ef~~ik~F~sneaypftgnp~~WNF 81 (686)
T TIGR03076 2 AFFYKHQKKFIGLVIAGVCVSGIGVGWGRTFKKTSKFGSNKTVFKTPSGKKYSEKEFFALKRFFSNEAYPFTGNPKAWNF 81 (686)
T ss_pred CHHHHHHHHEEEEEEEEEEEEECEECCCCCCCHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 34666264524689999997300001125651210488786479767876212999999999982466656799413433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------CCC------CCCHHHHHHHH-----HHHHHHHHHHCCCCHHHH
Q ss_conf 98601389999999999999999998-----------498------24889999999-----634765542102398999
Q gi|254781158|r 80 ARSVGLDKKILDNLVSGATLDQFIED-----------IGL------EADHGRVWGEI-----ARSPLFHGKDNKFSHDVF 137 (631)
Q Consensus 80 ~~~~~l~~qvl~~li~~~ll~~~a~~-----------~gi------~vsd~~v~~~i-----~~~p~Fq~~~G~Fd~~~~ 137 (631)
...--|+...|.+=+.++|++..... -+. -+|.++|+... ..-..||..+..-|++.|
T Consensus 82 LNeGllte~FLt~~lgEkLfl~vY~~~~~~f~KEK~y~~YrrfdapFissEevWkssAP~l~~~f~~lq~~~~pVsPegf 161 (686)
T TIGR03076 82 LNEGLLTERFLTNKLGEKLFLKVYKSGFPAFDKEKSYQGYRRFDAPFISSEEVWKSSAPQLRDALHIFQQIENPVSPEGF 161 (686)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 12314589888612425652476537754454442356534789864458988740377789999999973389987889
Q ss_pred HH
Q ss_conf 99
Q gi|254781158|r 138 VS 139 (631)
Q Consensus 138 ~~ 139 (631)
.+
T Consensus 162 ~a 163 (686)
T TIGR03076 162 AA 163 (686)
T ss_pred HH
T ss_conf 99
No 42
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=55.68 E-value=6.9 Score=17.06 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHH------------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4982488999999963------------47655421023989999999861100567767888
Q gi|254781158|r 106 IGLEADHGRVWGEIAR------------SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 (631)
Q Consensus 106 ~gi~vsd~~v~~~i~~------------~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~ 156 (631)
+||.++++-|...++. .+.|+ |-.||--...|.|.....+..-+.+++|
T Consensus 48 ~G~Eid~~~v~Ac~~RGv~VIq~Dld~GL~~F~--D~~FD~ViLsQTLQa~~Np~~iL~EmLR 108 (205)
T TIGR02081 48 YGIEIDQDGVLACVARGVSVIQGDLDEGLEAFP--DKSFDYVILSQTLQATRNPEEILDEMLR 108 (205)
T ss_pred EEEEECHHHHHHHHHCCCCEECCCCCCCCCCCC--CCCCCEEEECHHHHHHHCHHHHHHHHHH
T ss_conf 102345445999986252013006003401167--8876625421356642256899988776
No 43
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=54.19 E-value=12 Score=15.45 Aligned_cols=66 Identities=11% Similarity=0.195 Sum_probs=34.2
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH-------HCC---CCCCCEEEEECCEECCHHHHHHHHHHHHHHHH
Q ss_conf 06887640226899999999999998313101-------036---78884289999878489999999999999999
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA-------LFS---VSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~-------~~~---~~~~~~va~V~g~~I~~~~f~~~~~~~~~~~~ 68 (631)
|..|-+..+.|-...++++++++.+.+..+.. -++ .+|...+.++.+ +++.++.++...-..+|+.
T Consensus 1 ~~~~~~~~~nwr~~~~~~~~~~s~~~~~~~~~~~~~~~i~lGLDLqGG~~v~l~~~~-~~~~~~~~~~~~ii~~Rvn 76 (414)
T PRK08343 1 MSKMKKLLKNWRVILLIVLVIASIVAIAPGGDAAGTTGLQFGLDLSGGSWIQLKLEG-PVSADTMDTVVEILESRLN 76 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHH
T ss_conf 932778786479999999999999997355554677786346775896699998179-9999999999999998676
No 44
>PRK03598 hypothetical protein; Provisional
Probab=53.25 E-value=13 Score=15.36 Aligned_cols=21 Identities=24% Similarity=-0.036 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCC
Q ss_conf 268999999999999983131
Q gi|254781158|r 11 TWVAKIFLVVLFVPFLIWGLS 31 (631)
Q Consensus 11 s~~~~ii~~l~~~~f~~~g~~ 31 (631)
-|++..+++++++++++||..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~ 23 (331)
T PRK03598 3 KPVVIGLAVVALVAVGAGGWW 23 (331)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 338999999999999999765
No 45
>pfam04011 LemA LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.
Probab=50.08 E-value=12 Score=15.59 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHH
Q ss_conf 899999999999998313101
Q gi|254781158|r 13 VAKIFLVVLFVPFLIWGLSDA 33 (631)
Q Consensus 13 ~~~ii~~l~~~~f~~~g~~~~ 33 (631)
+..|+++++++.+++|+++.|
T Consensus 2 ~~~iil~~i~v~l~~~~i~~Y 22 (186)
T pfam04011 2 VTGIILALVLIVLALLAGCSY 22 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999999999
No 46
>PRK10893 hypothetical protein; Provisional
Probab=49.59 E-value=10 Score=15.99 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 0226899999999999998313
Q gi|254781158|r 9 SRTWVAKIFLVVLFVPFLIWGL 30 (631)
Q Consensus 9 ~~s~~~~ii~~l~~~~f~~~g~ 30 (631)
++.|+. +|+++++++|+.|-.
T Consensus 4 ~~~w~~-~~l~~~a~~l~~w~~ 24 (190)
T PRK10893 4 TRRWVI-IVLSLAALVLIGWNM 24 (190)
T ss_pred HHHHHH-HHHHHHHHHHHEEEE
T ss_conf 577999-999999999850551
No 47
>PRK09793 methyl-accepting protein IV; Provisional
Probab=45.16 E-value=14 Score=15.02 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=8.6
Q ss_pred CCHHHHHHCCCHH
Q ss_conf 9068876402268
Q gi|254781158|r 1 MLEIIRKASRTWV 13 (631)
Q Consensus 1 Ml~~iR~~~~s~~ 13 (631)
||.+||=.++-|+
T Consensus 1 Ml~nikI~t~L~~ 13 (533)
T PRK09793 1 MFNRIRISTTLFL 13 (533)
T ss_pred CCCCCCHHHHHHH
T ss_conf 9976248999999
No 48
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=43.50 E-value=18 Score=14.38 Aligned_cols=26 Identities=23% Similarity=0.669 Sum_probs=17.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 688764022689999999999999831
Q gi|254781158|r 3 EIIRKASRTWVAKIFLVVLFVPFLIWG 29 (631)
Q Consensus 3 ~~iR~~~~s~~~~ii~~l~~~~f~~~g 29 (631)
+.+|..++||.... +.++.++.++|-
T Consensus 5 ~~lr~~AdsWgLl~-~~~~Figvv~wa 30 (48)
T cd01324 5 ETLRGLADSWGLLY-LALFFLGVVVWA 30 (48)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 99999999999999-999999998750
No 49
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=43.05 E-value=18 Score=14.34 Aligned_cols=44 Identities=14% Similarity=0.405 Sum_probs=20.6
Q ss_pred HHHHCCCHHHH-HHHHHHHHHHHH-----HCCCHHHCCCCCCCEEEEECCE
Q ss_conf 87640226899-999999999998-----3131010367888428999987
Q gi|254781158|r 5 IRKASRTWVAK-IFLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQ 49 (631)
Q Consensus 5 iR~~~~s~~~~-ii~~l~~~~f~~-----~g~~~~~~~~~~~~~va~V~g~ 49 (631)
+|+..++++.+ +++++++++.++ |++++... ..+.=.||.||..
T Consensus 3 ~k~~~~~~~~~~~~~~~~liP~ly~~~~l~a~wdPy~-~~~~lpvAVVN~D 52 (164)
T TIGR03061 3 LKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYG-NLDNLPVAVVNED 52 (164)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECC
T ss_conf 7887638289999999999999999999846368755-6578718999778
No 50
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=42.23 E-value=19 Score=14.26 Aligned_cols=46 Identities=7% Similarity=0.237 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999999984982488999999963476554210239899999998
Q gi|254781158|r 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 (631)
Q Consensus 94 i~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~ 142 (631)
|.+.=|....+-+|..+|++++.+.+..++. -+|..|-..|..++.
T Consensus 37 I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~---~~~~idf~~Fl~~ms 82 (160)
T COG5126 37 IDRNELGKILRSLGFNPSEAEINKLFEEIDA---GNETVDFPEFLTVMS 82 (160)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC---CCCCCCHHHHHHHHH
T ss_conf 7389999999983899968999999985468---887607999999997
No 51
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=41.17 E-value=9.1 Score=16.27 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHH---HHHHHHCCCC--HHHHHHHH
Q ss_conf 899999996347---6554210239--89999999
Q gi|254781158|r 112 HGRVWGEIARSP---LFHGKDNKFS--HDVFVSRL 141 (631)
Q Consensus 112 d~~v~~~i~~~p---~Fq~~~G~Fd--~~~~~~~L 141 (631)
..-++..|-++| +|+|++|.|. +..|..+.
T Consensus 154 ~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~ 188 (779)
T PRK11091 154 SSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLT 188 (779)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 89999885028751578779876534109999880
No 52
>PRK04335 cell division protein ZipA; Provisional
Probab=39.59 E-value=20 Score=14.00 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 6899999999999998313101
Q gi|254781158|r 12 WVAKIFLVVLFVPFLIWGLSDA 33 (631)
Q Consensus 12 ~~~~ii~~l~~~~f~~~g~~~~ 33 (631)
||+.||-+|+|+++++-|+|..
T Consensus 6 lILIIvGaIAIiALL~HGlWts 27 (319)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTS 27 (319)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 2999999999999998401100
No 53
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=39.56 E-value=20 Score=13.99 Aligned_cols=32 Identities=3% Similarity=0.083 Sum_probs=23.9
Q ss_pred CCCEEEEECCEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 88428999987848999999999999999987
Q gi|254781158|r 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 (631)
Q Consensus 39 ~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~ 70 (631)
....+..-+++.+|+.|+..+.++....+..+
T Consensus 17 Pd~~Al~~~~~~lTY~el~~~~~~~A~~L~~~ 48 (458)
T PRK09029 17 PQAIALRLNDEVLTWQQLCARIDELAAGFQQQ 48 (458)
T ss_pred CCCEEEEECCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 99839998998786999999999999999974
No 54
>PRK11633 hypothetical protein; Provisional
Probab=39.54 E-value=20 Score=13.99 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=15.2
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 90688764022689999999999999831
Q gi|254781158|r 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWG 29 (631)
Q Consensus 1 Ml~~iR~~~~s~~~~ii~~l~~~~f~~~g 29 (631)
|=+.++++.=|-++.+.+++|+++++|-|
T Consensus 1 M~s~~k~RLVGaiVLValaVIfLP~l~Dg 29 (218)
T PRK11633 1 MASKFQNRLVGTIVLVALGVIVLPGLLDG 29 (218)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 93788888897999999999932165269
No 55
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=39.29 E-value=11 Score=15.65 Aligned_cols=136 Identities=8% Similarity=0.116 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCHHHHHHHH
Q ss_conf 6110056776788877544455543014542200222334554321112333210000123456-----78988999997
Q gi|254781158|r 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-----DPSNAVLTQWF 217 (631)
Q Consensus 143 ~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~-----~~td~el~~yy 217 (631)
.|+|+=..|...=-+++...|..+++.+|+-....+-- .+--|..++.+++ ++.|-.-++||
T Consensus 35 sQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNP-------------vLLKPkgdf~SQviv~G~a~g~~~~~~Y~ 101 (502)
T TIGR00313 35 SQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNP-------------VLLKPKGDFTSQVIVHGRAVGDMNAQEYY 101 (502)
T ss_pred HHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCC-------------CCCCCCCCCEEEEEEEEECCCCCCHHHHH
T ss_conf 11010133311378755137689998638788623487-------------10167888466789841124667615677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCH
Q ss_conf 656665554544332222110000000125788999875555455543321123788753000014788-8753036514
Q gi|254781158|r 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-FQSLKKGKKF 296 (631)
Q Consensus 218 ~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~-~~~l~~g~~F 296 (631)
.+..+.+...=+=+++++.-..+-+.=+=.=|-+||.- ..|++..+.+..-..|+.+ .+.+..|.-|
T Consensus 102 ~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL------------~~rDLaN~~iA~~~~A~~iLvADIDRGGVF 169 (502)
T TIGR00313 102 KNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINL------------KERDLANMRIAELADADVILVADIDRGGVF 169 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC------------CCCCCHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 79999999999999987520288899826887100053------------315722478986439767999750777432
Q ss_pred HHHHHHH
Q ss_conf 7887752
Q gi|254781158|r 297 IQLAEEQ 303 (631)
Q Consensus 297 ~~la~~~ 303 (631)
|.++--.
T Consensus 170 Asi~GTl 176 (502)
T TIGR00313 170 ASIYGTL 176 (502)
T ss_pred HHHHHHH
T ss_conf 4337466
No 56
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=39.25 E-value=21 Score=13.96 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=20.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCHHHCC-CC--CCCEEEEECCE
Q ss_conf 640226899999999999998313101036-78--88428999987
Q gi|254781158|r 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFS-VS--GSSTVVSVGRQ 49 (631)
Q Consensus 7 ~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~-~~--~~~~va~V~g~ 49 (631)
.+...|....++++.+++|++. ++-+... |+ .-..|.+|+|.
T Consensus 4 ~kk~~~~lv~ili~~~l~~~~~-vPyy~~~PGg~~d~~~vv~V~g~ 48 (342)
T COG3480 4 IKKIKWALVPILILAVLAFFVP-VPYYIEGPGGEEDLKQVVKVEGH 48 (342)
T ss_pred CEEEHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCEEEEECCC
T ss_conf 1020366899999999998526-74599469986222026886584
No 57
>pfam10726 DUF2518 Protein of function (DUF2518). This family is conserved in Cyanobacteria. Several members are annotated as the protein Ycf51. The function is not known.
Probab=38.95 E-value=21 Score=13.93 Aligned_cols=18 Identities=28% Similarity=0.866 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH-HC
Q ss_conf 6899999999999998-31
Q gi|254781158|r 12 WVAKIFLVVLFVPFLI-WG 29 (631)
Q Consensus 12 ~~~~ii~~l~~~~f~~-~g 29 (631)
|.+.++.++.+++|++ ||
T Consensus 16 ~~~i~l~~lTilaFi~~Wg 34 (145)
T pfam10726 16 WATLGLAVLTVLAFIFRWG 34 (145)
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999996247
No 58
>KOG0031 consensus
Probab=36.83 E-value=22 Score=13.72 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999849824889999999634
Q gi|254781158|r 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 (631)
Q Consensus 91 ~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~ 122 (631)
+..|.+.=|......+|=.++++++..++...
T Consensus 46 DG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea 77 (171)
T KOG0031 46 DGFIDKEDLRDMLASLGKIASDEELDAMMKEA 77 (171)
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 77666889999999807999779999999737
No 59
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=36.65 E-value=23 Score=13.70 Aligned_cols=15 Identities=7% Similarity=0.270 Sum_probs=10.5
Q ss_pred EEEECCEECCHHHHH
Q ss_conf 899998784899999
Q gi|254781158|r 43 VVSVGRQKVPFSSFI 57 (631)
Q Consensus 43 va~V~g~~I~~~~f~ 57 (631)
+-.++|++++.++|.
T Consensus 47 l~~l~G~~v~lsd~k 61 (176)
T PRK03147 47 LTDLEGKKIELKDLK 61 (176)
T ss_pred EECCCCCEEEHHHHC
T ss_conf 278998987189969
No 60
>pfam09494 Slx4 Slx4 endonuclease. The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates.
Probab=34.68 E-value=24 Score=13.50 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 125788999875555
Q gi|254781158|r 245 KIEISNDELQAEYEK 259 (631)
Q Consensus 245 ~~~vt~~ei~~~Y~~ 259 (631)
....++++++-.|+-
T Consensus 204 e~~~t~ed~~~lydl 218 (627)
T pfam09494 204 DTELTDEDLQWLYDL 218 (627)
T ss_pred CCCCCHHHHHHHHCC
T ss_conf 865314567655235
No 61
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=33.93 E-value=25 Score=13.42 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 899999999999998313101036
Q gi|254781158|r 13 VAKIFLVVLFVPFLIWGLSDALFS 36 (631)
Q Consensus 13 ~~~ii~~l~~~~f~~~g~~~~~~~ 36 (631)
++.+++.|+++.++.||+|....+
T Consensus 18 mg~VflfL~iLi~~~~~m~~~v~r 41 (84)
T COG3630 18 MGFVFLFLSILIYAMRGMGAVVRR 41 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999886
No 62
>pfam06571 consensus
Probab=33.81 E-value=19 Score=14.13 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 96347655421023989999999861100
Q gi|254781158|r 119 IARSPLFHGKDNKFSHDVFVSRLAREGIN 147 (631)
Q Consensus 119 i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t 147 (631)
|++.|.-+ ..|+|+++.+...|...|+.
T Consensus 4 VR~~P~Sr-~~p~Fnk~~L~~~L~~~GI~ 31 (119)
T pfam06571 4 VRSVPRSR-RNPQFNKEALAEALAEAGIG 31 (119)
T ss_pred CCCCCCCC-CCCCCCHHHHHHHHHHCCCE
T ss_conf 08897667-78986889999999986985
No 63
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.32 E-value=25 Score=13.36 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=29.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCE-EEEECCEECCHHH
Q ss_conf 7640226899999999999998313101036788842-8999987848999
Q gi|254781158|r 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSS 55 (631)
Q Consensus 6 R~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~-va~V~g~~I~~~~ 55 (631)
|+.+-+|.+.+.++++++.+++.|++..++..+.+.. .-.-+...|+++.
T Consensus 3 ~k~~~~~~~~~~~~~~vl~l~~i~i~sa~~~~~~s~~e~~~~~e~~~~~~~ 53 (292)
T COG3266 3 RKKAASQYMMMGVGILVLLLLIIGIGSALKAPSTSSSEAPASAEKSIDLNG 53 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 122212344578899999999999888760865466677744220102246
No 64
>pfam10001 DUF2242 Uncharacterized protein conserved in bacteria (DUF2242). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=33.29 E-value=26 Score=13.35 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=12.1
Q ss_pred CCCEEEEECCEECCHHHHHHHHHH
Q ss_conf 884289999878489999999999
Q gi|254781158|r 39 GSSTVVSVGRQKVPFSSFINSWKQ 62 (631)
Q Consensus 39 ~~~~va~V~g~~I~~~~f~~~~~~ 62 (631)
+.+..+||++|.|+-..|..++-+
T Consensus 92 s~DslVKV~sETI~~~~FY~rFF~ 115 (121)
T pfam10001 92 SDDSLVKVGSETITSAKFYDRFFQ 115 (121)
T ss_pred CCCCEEEEEEEEECCHHHHHHHHH
T ss_conf 886378871026425128999999
No 65
>TIGR01923 menE O-succinylbenzoate-CoA ligase; InterPro: IPR010192 This entry represents the enzyme O-succinylbenzoate-CoA ligase (MenE), which is involved in the fourth step of the menaquinone (vitamin K2) biosynthesis pathway. In bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In green sulphur bacteria and heliobacteria, menaquinones are thought to be used as a loosely bound secondary electron acceptor in the photosynthetic reaction centre. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem (PS) I. .; GO: 0008756 o-succinylbenzoate-CoA ligase activity, 0009234 menaquinone biosynthetic process.
Probab=33.04 E-value=26 Score=13.33 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCCC--CCEEEECCCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 235798999998616888--72034516995--69999970587889878999999999999
Q gi|254781158|r 541 NKFFGYDGISQVFSGPVE--MVKCFPIENGL--SYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 (631)
Q Consensus 541 ~~~~~~~~~~~iF~~~~g--~~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~~~~~~l~~~~ 598 (631)
.+..-++-+..+...-++ +....+.+|.. -.-+.-+...+.++.....++.+.+++.+
T Consensus 399 GENIyP~EIE~v~~s~p~v~~a~vvp~~D~~wG~vP~a~i~~~~Gd~~~~~~~l~~~l~~kL 460 (490)
T TIGR01923 399 GENIYPEEIEKVLYSHPGVQEAVVVPKPDAEWGQVPVAYIVSESGDDEISQAKLTAYLKEKL 460 (490)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 85668799999985387626888847847001786569998617898643688888887646
No 66
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=31.87 E-value=27 Score=13.20 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECCHHHHHHHHHH
Q ss_conf 022689999999999999831310103678884289999878489999999999
Q gi|254781158|r 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62 (631)
Q Consensus 9 ~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~~~~f~~~~~~ 62 (631)
+|+|++|++++++++. +++.++ .+. .+.++|++++|...++.
T Consensus 2 ~kn~~~~~~i~~~~~~-~~~~~~-----~~~------~~~~~i~ys~f~~~~~~ 43 (644)
T PRK10733 2 AKNLILWLVIAVVLMS-VFQSFG-----PSE------SNGRKVDYSTFLQEVNQ 43 (644)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHC-----CCC------CCCEEECHHHHHHHHHC
T ss_conf 6022999999999999-999836-----788------88706539999999984
No 67
>pfam03264 Cytochrom_NNT NapC/NirT cytochrome c family, N-terminal region. Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC and NirT, bind four haem groups, while others, such as TorC, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.
Probab=31.71 E-value=25 Score=13.42 Aligned_cols=21 Identities=19% Similarity=0.524 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHH
Q ss_conf 899999999999998313101
Q gi|254781158|r 13 VAKIFLVVLFVPFLIWGLSDA 33 (631)
Q Consensus 13 ~~~ii~~l~~~~f~~~g~~~~ 33 (631)
++.++++.+++++++|+...+
T Consensus 8 ~~~~~~~g~~~G~~~~~~~~~ 28 (174)
T pfam03264 8 LGVLLLVGFLLGVVFWGGFNT 28 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 68
>KOG3605 consensus
Probab=31.71 E-value=27 Score=13.19 Aligned_cols=22 Identities=9% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999988
Q gi|254781158|r 592 SYLTQMMNKDLLDSVIAYLKSQ 613 (631)
Q Consensus 592 ~~l~~~~~~~~~~~~~~~Lr~~ 613 (631)
+.+.|.+++.+.-+|.+.||.+
T Consensus 589 QfIAQSIGQAFqVAY~EFLrAN 610 (829)
T KOG3605 589 QFIAQSIGQAFQVAYMEFLRAN 610 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8999988899999999999872
No 69
>pfam11286 DUF3087 Protein of unknown function (DUF3087). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.90 E-value=28 Score=13.10 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=22.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCC-CCCCEEEEECCE
Q ss_conf 8876402268999999999999983131010367-888428999987
Q gi|254781158|r 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQ 49 (631)
Q Consensus 4 ~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~-~~~~~va~V~g~ 49 (631)
.-|++++-.++.++..++++++++...--.+||+ ++++-.--+.|-
T Consensus 10 ~YRk~~n~v~v~~va~lailsl~~s~~lI~lFG~~s~~Nf~~NL~GV 56 (165)
T pfam11286 10 RYRKHLNRVIVGFVASLAVLSLAFGQLLIALFGGESGGNFHLNLLGV 56 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHH
T ss_conf 99998519999999999999999999999981899999654425999
No 70
>PHA00350 putative assembly protein
Probab=30.32 E-value=29 Score=13.04 Aligned_cols=45 Identities=2% Similarity=-0.144 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 223345543211123332100001234567898899999765666
Q gi|254781158|r 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 (631)
Q Consensus 178 ~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~ 222 (631)
|...++-.....+.......|...+.+...-.+..+..+|..|+-
T Consensus 89 E~q~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~HRh 133 (402)
T PHA00350 89 EAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRH 133 (402)
T ss_pred CHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 313324654330023321266642000267884569999997321
No 71
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit; InterPro: IPR011881 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=29.86 E-value=29 Score=12.99 Aligned_cols=70 Identities=17% Similarity=0.369 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCH---HHHHCCCCCHHHHHHHHHH-HHHHHHHHH---H
Q ss_conf 12365245316232267567776420236672256786177211---2110233301344554322-333345679---9
Q gi|254781158|r 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV---IAHVSNIKPSFTVSFQEVK-KDIANQMRI---T 378 (631)
Q Consensus 306 ~~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~---iikv~~~~~~~~~~~~evk-~~I~~~l~~---~ 378 (631)
+.++.|.|.+ |.|+|-+ |+. .++ ....+++|+| ++||+.-. +|..-. .+|.-.|.. +
T Consensus 110 TltWAD~G~i--GWLVDGA---AI~-----nQ~-~L~~~SYGPY~RAm~RiC~EE-----~FH~~qG~~i~l~~~~~Gt~ 173 (297)
T TIGR02156 110 TLTWADIGVI--GWLVDGA---AII-----NQI-PLLRCSYGPYSRAMVRICKEE-----SFHQRQGYEILLTLARHGTQ 173 (297)
T ss_pred CCCHHHCCCC--CHHHHHH---HHH-----HHH-HHHCCCCCHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHCCCH
T ss_conf 5454220520--0033567---999-----889-873068972358887670211-----12577579999999861788
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9988888655657
Q gi|254781158|r 379 KASEKVKEDYKRL 391 (631)
Q Consensus 379 ~a~~~~~~~~~~i 391 (631)
..++.+.+++|..
T Consensus 174 ~Qr~M~QdAlNRw 186 (297)
T TIGR02156 174 EQRQMVQDALNRW 186 (297)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7999999887643
No 72
>pfam04585 consensus
Probab=29.81 E-value=29 Score=12.98 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=23.4
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCC-CCCCEEEEECC
Q ss_conf 068876402268999999999999983131010367-88842899998
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGR 48 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~-~~~~~va~V~g 48 (631)
+.+.|...+.|-+..|+.|++....+.|+- +..+. .-..+|+.|+.
T Consensus 20 ~Gs~~~qa~nWrl~a~~~L~ia~~~~~g~v-~~~~qskivPYVVevD~ 66 (218)
T pfam04585 20 VGSAVVQAQNWRFVGLLSLLIALALVGGLV-YQSSQSKFVPYVVEVDK 66 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EECCCCCEEEEEEEECC
T ss_conf 779999998899999999999999998864-05157807769999858
No 73
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=29.69 E-value=29 Score=12.97 Aligned_cols=12 Identities=8% Similarity=0.396 Sum_probs=5.3
Q ss_pred CCHHHHHCCCCC
Q ss_conf 211211023330
Q gi|254781158|r 347 GYVIAHVSNIKP 358 (631)
Q Consensus 347 G~~iikv~~~~~ 358 (631)
|--.+|++..-.
T Consensus 150 G~L~~~~t~~g~ 161 (545)
T TIGR01511 150 GSLVVKATKVGE 161 (545)
T ss_pred CEEEEEEEECCC
T ss_conf 489999984177
No 74
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.33 E-value=31 Score=12.82 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEECCEECC
Q ss_conf 999999999999983131010367888428999987848
Q gi|254781158|r 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP 52 (631)
Q Consensus 14 ~~ii~~l~~~~f~~~g~~~~~~~~~~~~~va~V~g~~I~ 52 (631)
..|++.|++++|+..-+.++.-...|-.....|+|+.+.
T Consensus 13 ~vIiv~LiI~sf~~i~~f~~a~~~kG~~A~i~v~Gk~~r 51 (132)
T COG5341 13 FVIIVMLIILSFLPILLFSLAKAKKGAVAEISVDGKVIR 51 (132)
T ss_pred EEEEHHHHHHHHHHHHHHEEEECCCCCEEEEEECCEEEE
T ss_conf 773248999999999852144025782799998778999
No 75
>pfam09636 XkdW XkdW protein. This protein of approx. 100 residues contains two alpha helices and two beta strands and is probably monomeric. It is expressed in bacteria but is probably viral in origin. Its function is unknown.
Probab=28.01 E-value=31 Score=12.78 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 456789889999976566655
Q gi|254781158|r 204 AIADPSNAVLTQWFEKYKDNY 224 (631)
Q Consensus 204 ~~~~~td~el~~yy~~nk~~f 224 (631)
+.+.||++||++|+++...+=
T Consensus 39 ~aP~PTe~EL~twWee~q~np 59 (106)
T pfam09636 39 RAPQPTEKELKTWWEELQSNP 59 (106)
T ss_pred CCCCCCHHHHHHHHHHHHHCC
T ss_conf 799986899999999985288
No 76
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=27.54 E-value=32 Score=12.73 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=14.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 870889997899860138999999999999999999849824
Q gi|254781158|r 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 (631)
Q Consensus 69 ~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~v 110 (631)
|..|-.+|+++.-. +...-++||+.+
T Consensus 13 QTPGVsLT~EqK~~----------------IA~KLDeLGVDv 38 (371)
T TIGR02090 13 QTPGVSLTVEQKVE----------------IARKLDELGVDV 38 (371)
T ss_pred CCCCCCCCHHHHHH----------------HHHHHHHCCCCE
T ss_conf 18695688656899----------------999997469828
No 77
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=27.45 E-value=32 Score=12.72 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=8.9
Q ss_pred EEEEEECCC-CCCCCCHHHHHH
Q ss_conf 999980232-233466788899
Q gi|254781158|r 464 MWVQIKESI-PARDRKLEEVLT 484 (631)
Q Consensus 464 ~~~~v~~~~-~~~~~~l~evk~ 484 (631)
+-..|...= -.++-||.-.-.
T Consensus 219 vdtTVnGlGER~GItPL~~~~A 240 (355)
T TIGR02146 219 VDTTVNGLGERAGITPLGGIAA 240 (355)
T ss_pred EEEEECCCCCCCCCCCHHHHHH
T ss_conf 9875415324444366589999
No 78
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=27.15 E-value=32 Score=12.68 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=22.5
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHH-HCCCHHHCCCCC-CCEEEEECC
Q ss_conf 06887640226899999999999998-313101036788-842899998
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSG-SSTVVSVGR 48 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~-~g~~~~~~~~~~-~~~va~V~g 48 (631)
+...|...+.|-+..|+.|++ ++++ .|+- +..+.+. ..+|+.|+.
T Consensus 22 ~Gs~~~qa~nWrl~a~~~L~l-a~~~~~g~i-~~~sqskvvPYVVeVD~ 68 (220)
T PRK13836 22 YGSYVKAAAAWRIVGILGLTM-AVIGFSYAL-YLSTQVKLVPYIVEVDK 68 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-EECCCCCEEEEEEEECC
T ss_conf 899999998889999999999-999998861-14047818759999869
No 79
>pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.11 E-value=32 Score=12.68 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=3.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254781158|r 16 IFLVVLFVPFL 26 (631)
Q Consensus 16 ii~~l~~~~f~ 26 (631)
.++.++++.++
T Consensus 13 ~i~~~lli~~v 23 (73)
T pfam09851 13 LLFWLLLIAGV 23 (73)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 80
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM; InterPro: IPR012696 This family consists of proteins from in the PhnM family. PhnM is a protein associated with phosphonate utilization in a number of bacterial species. Pseudomonas stutzeri WM88, has a related protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound), which is not contained in this entry..
Probab=26.26 E-value=34 Score=12.58 Aligned_cols=55 Identities=15% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHH---H-----HHHH--H-HCCC-CHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 24889999999634---7-----6554--2-1023-989999999-8611--005677678887754445
Q gi|254781158|r 109 EADHGRVWGEIARS---P-----LFHG--K-DNKF-SHDVFVSRL-AREG--INEKEYIDHYTKMLSRTD 163 (631)
Q Consensus 109 ~vsd~~v~~~i~~~---p-----~Fq~--~-~G~F-d~~~~~~~L-~~~g--~t~~~~~~~~~~~l~~~~ 163 (631)
.++..++...+... | .|-| + +|+| +.++|+.++ ...| +|++++-+.+.+....++
T Consensus 145 E~~~~~~~~~~~~~~~~~~v~L~SlMDHtPGQrQ~~~~~~yr~~~~~k~grvlsd~~~~~~~~~r~~~~~ 214 (391)
T TIGR02318 145 ELPNEEVLPELEELIDDPRVDLISLMDHTPGQRQFRDLEKYREYYQKKRGRVLSDDEFDEIVEERIARSA 214 (391)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 0688768999999717997018886068870110112578999872452674589999999999999735
No 81
>pfam11116 DUF2624 Protein of unknown function (DUF2624). This family is conserved in the Bacillaceae family. Several members are named as YqfT. The function is not known.
Probab=25.31 E-value=35 Score=12.47 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHH
Q ss_conf 999999849824889999999634765542-102398999999986
Q gi|254781158|r 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGK-DNKFSHDVFVSRLAR 143 (631)
Q Consensus 99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~-~G~Fd~~~~~~~L~~ 143 (631)
|.++++++|+.++.++-.+.+.=+ ++. -.-||.+.-..+|+.
T Consensus 20 LlkYakqy~i~iT~~QA~~I~~~l---rgk~inifn~~eR~k~lk~ 62 (84)
T pfam11116 20 LLKYAKQYGIPITRAQAKQIAKLL---RGKNINIFNESERSKLLKE 62 (84)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH---HCCCCCCCCHHHHHHHHHH
T ss_conf 999999918887889999999998---5267898998999999999
No 82
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.19 E-value=37 Score=12.33 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=26.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC---EEEEECCEECCHHHHH
Q ss_conf 8764022689999999999999831310103678884---2899998784899999
Q gi|254781158|r 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFI 57 (631)
Q Consensus 5 iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~~~~---~va~V~g~~I~~~~f~ 57 (631)
||++. ....++++++++.|+.|++.+- +..+.. ...+.-..+++-.+..
T Consensus 1 ~r~~i---~~~~~~~l~l~t~v~~~~~~~~-gt~~~s~~~~~~~l~~~plsdeE~n 52 (189)
T COG4902 1 IRENI---SSLTFFVLLLITAVVGISGCQE-GTNSESTDTSGVTLQDSPLSDEEIN 52 (189)
T ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHCCCCCCCCHHHHH
T ss_conf 94124---4459999999999973355135-8999870003100467888867875
No 83
>PRK01749 disulfide bond formation protein B; Provisional
Probab=24.10 E-value=37 Score=12.32 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=21.9
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 90688764022689999999999999831
Q gi|254781158|r 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWG 29 (631)
Q Consensus 1 Ml~~iR~~~~s~~~~ii~~l~~~~f~~~g 29 (631)
||+.+++.+++-..+.++++..++++...
T Consensus 1 m~~~l~~~~~~R~~wlll~~~~~~L~~~A 29 (175)
T PRK01749 1 MLRFLNQCSRGRGAWLLLAFTALALELTA 29 (175)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95899988875599999999999999999
No 84
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.03 E-value=19 Score=14.15 Aligned_cols=11 Identities=18% Similarity=0.130 Sum_probs=4.7
Q ss_pred CCCHHHHHHHH
Q ss_conf 24889999999
Q gi|254781158|r 109 EADHGRVWGEI 119 (631)
Q Consensus 109 ~vsd~~v~~~i 119 (631)
.++|+++...+
T Consensus 110 ~~~~~~~~~~~ 120 (180)
T PRK08455 110 ELSNELLKPEL 120 (180)
T ss_pred EECCHHHHHHH
T ss_conf 98688889999
No 85
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=23.28 E-value=38 Score=12.22 Aligned_cols=50 Identities=22% Similarity=0.126 Sum_probs=25.1
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCC-CCCEEEEEC--CEECC
Q ss_conf 0688764022689999999999999831310103678-884289999--87848
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVG--RQKVP 52 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~-~~~~va~V~--g~~I~ 52 (631)
+...|...+.|-+..|..|++.+..+.|+-- ..+.+ =..+|+.|+ |+...
T Consensus 31 ~Gs~~~qa~nWrl~af~~L~la~~~~~glv~-~ssqskivPyVVeVD~lG~a~a 83 (228)
T PRK13872 31 IGSARVQARNWRLMAFGCLALSAGLAGGLVW-QSARGTVVPWVVEVDRLGQAQA 83 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-ECCCCEEEEEEEEECCCCCEEE
T ss_conf 7699999987899999999999999857178-7057748879999858998777
No 86
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=23.20 E-value=38 Score=12.21 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHCCCHHH------------CC--CCCCCEEEEE-CCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99999999983131010------------36--7888428999-987848999999999999999987088999789
Q gi|254781158|r 18 LVVLFVPFLIWGLSDAL------------FS--VSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 (631)
Q Consensus 18 ~~l~~~~f~~~g~~~~~------------~~--~~~~~~va~V-~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~ 79 (631)
+.||++.|++.|++... .. ..|..+-.+| +.......+...+...+++++.+++..-.+..+
T Consensus 8 ~~ll~~~~~l~gC~~~~~~~~~~~~~~~~l~G~amGT~~~I~~~~~~~~~~~~~~~~i~~~l~~id~~~S~y~~~Se 84 (351)
T PRK10461 8 VALLAAALLLVGCDQAPQPAKTHATEATVLEGKTMGTFWRVSVPGIDAKRSAELQEKIQTQLDADDQLLSTYKNDSA 84 (351)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 99999999998724888775557766337787636808999997388030899999999999999997089888089
No 87
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family; InterPro: IPR006536 Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L . These proteins contain four RNA recognition motifs. ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=22.89 E-value=39 Score=12.17 Aligned_cols=14 Identities=29% Similarity=0.067 Sum_probs=4.8
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 23223346678889
Q gi|254781158|r 470 ESIPARDRKLEEVL 483 (631)
Q Consensus 470 ~~~~~~~~~l~evk 483 (631)
+....++..|+.|.
T Consensus 510 er~~~gL~e~~~ve 523 (557)
T TIGR01649 510 ERSKMGLLELESVE 523 (557)
T ss_pred HHHHHHHCCCCCHH
T ss_conf 46465320210478
No 88
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit; InterPro: IPR012735 Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex..
Probab=22.60 E-value=39 Score=12.13 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=80.3
Q ss_pred HHHHHHHCCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45554301454220022233--4554321112333210000123456789889999976566655545443322221100
Q gi|254781158|r 162 TDVVGMFVGGMRPSNLLLDQ--AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 (631)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~--~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~ 239 (631)
..|--++.+.+|+||.-.+- ..++.++.|-|=++ ++-=+++|.+|-.+.. -.+.|-|.+.||..
T Consensus 65 GML~AAi~G~vF~PP~A~~il~~~r~~~~gkGVf~I----------iKNF~AD~~~F~~A~~--qar~EG~~~~~~iv-- 130 (328)
T TIGR02362 65 GMLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVI----------IKNFEADLSEFSQAIE--QARQEGRDIKYIIV-- 130 (328)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEE----------EECCHHHHHHHHHHHH--HHHHCCCCEEEEEE--
T ss_conf 043331006747999858999999875249768999----------7176777899999999--99863895037997--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCCCCCCCCH
Q ss_conf 00000125788999875555455543321123788-753000014788875303651478877-5201123652453162
Q gi|254781158|r 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGKKFIQLAE-EQGKSLSDISLGSFSK 317 (631)
Q Consensus 240 ~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~-i~~~~~~~A~~~~~~l~~g~~F~~la~-~~~~~~~~~~lg~~~~ 317 (631)
.|++.|..+. .|+. .+|-++= |++- +=+-++-++|++.++|-. -.....+=..+|.-++
T Consensus 131 ---~DDiSVe~~~---~f~~--------R~RGvAGtvLvH-----KIlGaAA~~GaSL~~L~~la~~l~~~~aTlGvA~~ 191 (328)
T TIGR02362 131 ---HDDISVESES---SFKK--------RRRGVAGTVLVH-----KILGAAAKEGASLDELEHLAAALVTNIATLGVAAK 191 (328)
T ss_pred ---CCCCCCCCHH---HHHH--------CCCCCHHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---2753317645---5633--------035632577998-----99999852376678999999998633676766741
Q ss_pred HHCCCHHHHHHHHCCCCCCCEE-EE-EEECCCC
Q ss_conf 3226756777642023667225-67-8617721
Q gi|254781158|r 318 EYIPDVSLADSIFSLAKKGDFT-PV-IHGSFGY 348 (631)
Q Consensus 318 ~~~~~~~~~~a~f~l~~~G~is-~p-v~t~~G~ 348 (631)
+... |.-....|.| ++|+|+ |+ |.++-||
T Consensus 192 ~A~l-P~~~~p~F~L-~~G~iyyGiGIHGE~GY 222 (328)
T TIGR02362 192 SADL-PGQSEPLFDL-EEGEIYYGIGIHGEPGY 222 (328)
T ss_pred CCCC-CCCCCCCCCC-CCCCEEEEEEEECCCCC
T ss_conf 3665-3213766458-99607860156368884
No 89
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=22.35 E-value=40 Score=12.10 Aligned_cols=42 Identities=10% Similarity=0.291 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999976566655545443322221100000001257889998755554
Q gi|254781158|r 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 (631)
Q Consensus 212 el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~ 260 (631)
.|.++|++.++.+.......++.|.++.+. ++++-..||...
T Consensus 46 ~L~~fY~~l~~~~~~~~~~~fEIVfVS~Dr-------se~~f~~y~~~M 87 (146)
T cd03008 46 KLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFLKDM 87 (146)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCC-------CHHHHHHHHHHC
T ss_conf 999999999876544037877999983689-------999999999977
No 90
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; InterPro: IPR011885 This entry contains NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases .; GO: 0020037 heme binding, 0006118 electron transport, 0016021 integral to membrane.
Probab=22.29 E-value=40 Score=12.09 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=21.0
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 06887640226899999999999998313101
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA 33 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~ 33 (631)
+..+|+=++.-++.++++.++.+.++||--++
T Consensus 6 ~~~~~~PS~~~~G~l~~~~~~~g~~~W~gFN~ 37 (185)
T TIGR02161 6 WKVLRRPSRLALGLLLLVGFVGGIVFWGGFNT 37 (185)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99850734688999999999999987656877
No 91
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=21.83 E-value=26 Score=13.33 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCCCEECCCCEEEEEEEECCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
Q ss_conf 7651113697499999802322334667----888999999999999999999999999999983699978989863981
Q gi|254781158|r 452 KDHTVALPDGSYMWVQIKESIPARDRKL----EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 (631)
Q Consensus 452 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l----~evk~~V~~~~~~~k~~~~~~~~a~~~~~~~~~~g~~l~~~a~~~~~~ 527 (631)
..-++..++++.|...|.+-..=+++.+ +||+..|.+.+..--.... +++... -+...-+.--++|.+.
T Consensus 70 V~~VfQdPDDQlF~a~V~~DVaFGPlNLGL~e~Ev~~RV~eAL~~vg~~~~-~~rp~h---~LS~GekkRvAIAGAv--- 142 (190)
T TIGR01166 70 VGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGISGL-EERPTH---LLSGGEKKRVAIAGAV--- 142 (190)
T ss_pred EEEEEECHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH-HHCCHH---HCCCCCHHHHHHHHHH---
T ss_conf 003762634420267622100335456733715767878999986063224-412241---1558613577777588---
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 440256222655423579899999861
Q gi|254781158|r 528 LLTTNQINRMDNENKFFGYDGISQVFS 554 (631)
Q Consensus 528 ~~~~~~i~r~~~~~~~~~~~~~~~iF~ 554 (631)
.-..+.+ -.+.++.++-+.-..++..
T Consensus 143 AM~Pd~l-~LDEPTAGLDp~G~~q~~~ 168 (190)
T TIGR01166 143 AMRPDVL-LLDEPTAGLDPAGAEQLLA 168 (190)
T ss_pred HHCCCEE-EEECCCCCCCHHHHHHHHH
T ss_conf 6166346-6427888978747999999
No 92
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=21.40 E-value=41 Score=11.98 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHH
Q ss_conf 899999999999998313101
Q gi|254781158|r 13 VAKIFLVVLFVPFLIWGLSDA 33 (631)
Q Consensus 13 ~~~ii~~l~~~~f~~~g~~~~ 33 (631)
.+.++++.+++...+|++.+.
T Consensus 9 pvsi~l~~v~l~~flWavksg 29 (58)
T COG3197 9 PVSILLGAVGLGAFLWAVKSG 29 (58)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999851357
No 93
>KOG0144 consensus
Probab=20.55 E-value=43 Score=11.86 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHH--HH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1257889998755554--55-543----321123788753000014788875303
Q gi|254781158|r 245 KIEISNDELQAEYEKN--KE-KYF----SPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 245 ~~~vt~~ei~~~Y~~~--~~-~f~----~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
....||.||+..|-.. ++ -|. ..-+|-...+.|.+++.|-.+.+.++.
T Consensus 133 sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144 133 SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCEEEEEEEHHHHHHHHHHHHCC
T ss_conf 2102388899999860762122210064334564169997568989999986246
No 94
>pfam04917 Shufflon_N Bacterial shufflon protein, N-terminal constant region. This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.
Probab=20.31 E-value=44 Score=11.83 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHCCCHH-HHHHHHHHHHHHHHHC
Q ss_conf 876402268-9999999999999831
Q gi|254781158|r 5 IRKASRTWV-AKIFLVVLFVPFLIWG 29 (631)
Q Consensus 5 iR~~~~s~~-~~ii~~l~~~~f~~~g 29 (631)
||++.|+|. +-++++|+++.++..+
T Consensus 1 ~r~~~kGf~LlE~~~~L~I~~~~~~~ 26 (356)
T pfam04917 1 MKKTDKGVSLLEVGAVLLIVVMVIPK 26 (356)
T ss_pred CCEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 91203443089999999999999999
No 95
>pfam07009 DUF1312 Protein of unknown function (DUF1312). This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.16 E-value=44 Score=11.81 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=9.9
Q ss_pred CCCCCEEEEECCEECCH
Q ss_conf 78884289999878489
Q gi|254781158|r 37 VSGSSTVVSVGRQKVPF 53 (631)
Q Consensus 37 ~~~~~~va~V~g~~I~~ 53 (631)
..+...+.+++|+.+-.
T Consensus 24 ~~~~~avI~~dGk~~~~ 40 (113)
T pfam07009 24 GNNKKAVIKVDGKVVKT 40 (113)
T ss_pred CCCCEEEEEECCEEEEE
T ss_conf 89819999999999999
No 96
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=20.08 E-value=44 Score=11.80 Aligned_cols=50 Identities=24% Similarity=0.175 Sum_probs=23.3
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCC-CCCEEEEEC--CEECC
Q ss_conf 0688764022689999999999999831310103678-884289999--87848
Q gi|254781158|r 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVG--RQKVP 52 (631)
Q Consensus 2 l~~iR~~~~s~~~~ii~~l~~~~f~~~g~~~~~~~~~-~~~~va~V~--g~~I~ 52 (631)
+...|...+.|-+..|+.|++....+.|+- +..+.+ =..+|+.|+ |+...
T Consensus 47 ~Gs~~~qArnWRl~af~sL~la~~~~~glv-~~ssqskivPyVVeVD~lG~a~a 99 (252)
T PRK13887 47 VGGVVSQRQTWQVVGILSLLIALAAVGGVI-HIGSQSKFIPYVVQVDKLGQTVA 99 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEE-EECCCCEEEEEEEEECCCCCEEE
T ss_conf 779999999999999999999999886658-98257748768999889997688
Done!