HHsearch alignment for GI: 254781158 and conserved domain: pfam05698
>pfam05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus. In the E. coli cytosol, a fraction of the newly synthesized proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent p
Probab=95.30 E-value=0.19 Score=27.24 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998498248899999996347-6554---2102398999999986110056776788877544455
Q gi|254781158|r 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP-LFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 (631)
Q Consensus 89 vl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p-~Fq~---~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l 164 (631)
T Consensus 20 ~~~~~~~~~i~~~L~~~~~~evP~~~v~~e~~~~~~~~~~~~~~~g-~~---~e~~~~~~~~~~e~~~~~~~~~A~~~vk 95 (162)
T pfam05698 20 ATAEELKEAILDKLVENAEIELPESLVEEEIDRLLRQFLQQLQGQG-LD---LEEYLSLSGSSEEELREEFKEEAEKRVK 95 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CC---HHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998788999999999999999999999987669-98---8888765256478887888999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 54301454220022233455432111233321000012345678988999997656665554544332222110000000
Q gi|254781158|r 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 (631)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~ 244 (631)
T Consensus 96 ~~lil~~I----------------------------a~~e~i~vs~eev~~~i~~~a~~~~~------------------ 129 (162)
T pfam05698 96 LGLILEEI----------------------------AKEEKIEVTDEEIKEEIEELASQYGM------------------ 129 (162)
T ss_pred HHHHHHHH----------------------------HHHCCCCCCHHHHHHHHHHHHHHCCC------------------
T ss_conf 99999999----------------------------98808998999999999999988699------------------
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 12578899987555545
Q gi|254781158|r 245 KIEISNDELQAEYEKNK 261 (631)
Q Consensus 245 ~~~vt~~ei~~~Y~~~~ 261 (631)
T Consensus 130 ----~~~~i~~~~~~~~ 142 (162)
T pfam05698 130 ----EPEEVKEFYKKNE 142 (162)
T ss_pred ----CHHHHHHHHHCCH
T ss_conf ----9999999997555