HHsearch alignment of GI: 254781158 and MMDB domain: 1j6y_A_

>1j6y_A (A:) Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana}
Probab=99.69  E-value=3.3e-19  Score=142.88  Aligned_cols=129  Identities=14%  Similarity=0.243  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q ss_conf             9997656665554544332222110000000125788999875555455543321123788753000014----788875
Q gi|254781158|r  214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQS  289 (631)
Q Consensus       214 ~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A----~~~~~~  289 (631)
                      ++||+.++.++..++.+...+        .+.+.|||+||++||++|+++|..++   ++||.+++.++|    +++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--------~~~i~vtd~ei~~~y~~~~~~~~~~~---~~~I~~~~~~~a~~~~~~~~~~   71 (139)
T 1j6y_A            3 SSHHHHHHSSGLVPRGSHMAS--------RDQVKASHILIKHQGSRRKASWKDPE---GKIILTTTREAAVEQLKSIRED   71 (139)
T ss_dssp             -----------------CCSS--------CCSCEEECCEECSCTTSSSSSCSCCC---SCCCSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--------CCEEEEEEEEECCCCCCCCHHCCCCC---CCCCCCCCHHHHHHHHHHHHHH
T ss_conf             654433212576777655478--------01289998998157755520002432---1111202299999999999999


Q ss_pred             HHC-CCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf             303-65147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r  290 LKK-GKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN  355 (631)
Q Consensus       290 l~~-g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~  355 (631)
                      +++ |.+|+++|+.+|.+   ..+|..||+..+.++ ++|++++|+| ++|++|+|++++.|||||||+.
T Consensus        72 ~~~~~~~F~~~a~~~s~~~~~~~~g~~~~~~~~~l~-~~~~~~~~~l-~~Geis~pi~~~~g~~Iikv~a  139 (139)
T 1j6y_A           72 IVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQ-KPFEEATYAL-KVGDISDIVDTDSGVHIIKRTA  139 (139)
T ss_dssp             HHSSCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSC-THHHHHHHHC-CSSSCCSCEEETTEEECCCSCC
T ss_pred             HHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEEEC
T ss_conf             874842799999995841002568612046124167-8999999848-8998476579599079999939