HHsearch alignment of GI: 254781158 and MMDB domain: 3gpk_A_

>3gpk_A (A:) PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444}
Probab=97.19  E-value=0.0019  Score=39.85  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             99999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN  578 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~  578 (631)
                      .+..|+++...+ +.|.+|+++|+.++..-...............+++++...+|++++|+++ .|...+.+|.|++|.+
T Consensus        25 ~~~~a~~i~~~l-~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~~~~~~~~~~l~~Gevs-~pi~~~~G~~Iikv~~  102 (112)
T 3gpk_A           25 VFANAEKIVEQL-KQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASXGPGQLA-GPVEIRGGFSILYLID  102 (112)
T ss_dssp             HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTTCEE-EEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE
T ss_conf             999999999999-86999899999856353323332100003441046999999818999818-6589899999999964


Q ss_pred             CCCCC
Q ss_conf             87889
Q gi|254781158|r  579 SKVGP  583 (631)
Q Consensus       579 ~~~~~  583 (631)
                      ..+..
T Consensus       103 ~~~~~  107 (112)
T 3gpk_A          103 KREGH  107 (112)
T ss_dssp             EECCS
T ss_pred             EECCC
T ss_conf             87673