HHsearch results for GI: 254781158 and protein with PDBid: 1m5y_A
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=100.00 E-value=5.3e-37 Score=258.18 Aligned_cols=381 Identities=16% Similarity=0.129 Sum_probs=238.1
Q ss_pred CCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 84289999878489999999999999999870889997899860138999999999999999999849824889999999
Q gi|254781158|r 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 (631)
Q Consensus 40 ~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i 119 (631)
..+||+|||++||..||+++++....++.+. +..+++++ .+++++|++||++.|+.++|+++||.|||++|.+.|
T Consensus 6 ~~ivA~Vng~~It~~d~~~~~~~~~~~~~~~-~~~~~~~~----~lr~qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~i 80 (408)
T 1m5y_A 6 DKVAAVVNNGVVLESDVDGLMQSVKLNAAQA-RQQLPDDA----TLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAI 80 (408)
T ss_dssp CCEEEEESSSEEEHHHHHHHHHHHHHHHHTT-TCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CEEEEEECCEECCHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 7179999999628999999999999987632-46798459----999999999999999999999849997999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 63476554210239899999998611005677678887754445554301454220022233455432111233321000
Q gi|254781158|r 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 (631)
Q Consensus 120 ~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~ 199 (631)
.+++.+ +.|+...|.++|...|+++..|++.++.++..+++......
T Consensus 81 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------- 127 (408)
T 1m5y_A 81 ANIAKQ----NNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVR----------------------------- 127 (408)
T ss_dssp HHHHHH----TTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHH----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_conf 999987----14237889999997388878888878899999998866532-----------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01234567898899999765666555454433222211000000012578899987555545554332112378875300
Q gi|254781158|r 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 (631)
Q Consensus 200 ~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~ 279 (631)
+.+.+++.++..||+.+...+..+....+.++......... ..... ..
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~----------------------~~ 175 (408)
T 1m5y_A 128 ----RRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPT------SDQVN----------------------EA 175 (408)
T ss_dssp ----HTCCCCTTHHHHHHHCC-------CCEEEEEEEEECCSSCC------HHHHH----------------------HH
T ss_pred ----HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH------HHHHH----------------------HH
T ss_conf ----10146635678999874310133103321111012333101------67899----------------------98
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCC
Q ss_conf 0014788875303651478877520112---3652453162322675677764202366722567861772112110233
Q gi|254781158|r 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 (631)
Q Consensus 280 ~~~A~~~~~~l~~g~~F~~la~~~~~~~---~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~ 356 (631)
...++......+.|.+|++++..++.+. .++..||+..+.++ +.+...++.+ ++|++++|+....|||++++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~F~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l-~~g~i~~~~~~~~~~~~~~~~~~ 253 (408)
T 1m5y_A 176 ESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKVNDL 253 (408)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHTGGGTC-CTTCEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHCC-HHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 877899999875100499998871236265526863323301100-1678887651-35764454235542799999987
Q ss_pred CCHHHH-HHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 301344-554322--333345---67999988888655657765420110012455408532001344411234565432
Q gi|254781158|r 357 KPSFTV-SFQEVK--KDIANQ---MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 (631)
Q Consensus 357 ~~~~~~-~~~evk--~~I~~~---l~~~~a~~~~~~~~~~i~d~~~~g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (631)
...... +.+.++ +.+... -....+...+.... .+...++.+|.++|..++....+... |.. .|...
T Consensus 254 ~~~~~~~~~~~v~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~F~~~a~~~s~d~~s~~~----gg~-lg~~~ 325 (408)
T 1m5y_A 254 RGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIA---ADIKSGKTTFAAAAKEFSQDPGSANQ----GGD-LGWAT 325 (408)
T ss_dssp CCCCCCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHH---HHHHTTSSCHHHHHHHHCCCTTTGGG----TTE-EEEEC
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHCCCCCCHHH----CCC-CCCCC
T ss_conf 62100133320203444414877633389999999999---99872632389999982889550420----575-66677
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21111168888753112346776511136974999998023223346678889999999999999999999999
Q gi|254781158|r 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 (631)
Q Consensus 431 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~a~ 504 (631)
++ ...++....+|+.+. +..+.++....| |.+++|.++.+.. .+++++|+.|...+..+++.+.......
T Consensus 326 ~~-~~~~~~~~ai~~l~~-G~is~pv~t~~G-~hii~v~~~~~~~-~~~~~~~~~i~~~l~~~k~~~~~~~~l~ 395 (408)
T 1m5y_A 326 PD-IFDPAFRDALTRLNK-GQMSAPVHSSFG-WHLIELLDTRNVD-KTDAAQKDRAYRMLMNRKFSEEAASWMQ 395 (408)
T ss_dssp GG-GSCHHHHHHHHTCCT-TCBCCCEECSSC-EEEEEEEEEEECC---------HHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHCCCC-CCCCCCEECCCE-EEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45-478899999981899-990874783884-8999998740688-8746579999999999999999999999