HHsearch results for GI: 254781158 and protein with PDBid: 1m5y_A

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=100.00  E-value=5.3e-37  Score=258.18  Aligned_cols=381  Identities=16%  Similarity=0.129  Sum_probs=238.1

Q ss_pred             CCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             84289999878489999999999999999870889997899860138999999999999999999849824889999999
Q gi|254781158|r   40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI  119 (631)
Q Consensus        40 ~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i  119 (631)
                      ..+||+|||++||..||+++++....++.+. +..+++++    .+++++|++||++.|+.++|+++||.|||++|.+.|
T Consensus         6 ~~ivA~Vng~~It~~d~~~~~~~~~~~~~~~-~~~~~~~~----~lr~qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~i   80 (408)
T 1m5y_A            6 DKVAAVVNNGVVLESDVDGLMQSVKLNAAQA-RQQLPDDA----TLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAI   80 (408)
T ss_dssp             CCEEEEESSSEEEHHHHHHHHHHHHHHHHTT-TCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CEEEEEECCEECCHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             7179999999628999999999999987632-46798459----999999999999999999999849997999999999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             63476554210239899999998611005677678887754445554301454220022233455432111233321000
Q gi|254781158|r  120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN  199 (631)
Q Consensus       120 ~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~  199 (631)
                      .+++.+    +.|+...|.++|...|+++..|++.++.++..+++......                             
T Consensus        81 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------------  127 (408)
T 1m5y_A           81 ANIAKQ----NNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVR-----------------------------  127 (408)
T ss_dssp             HHHHHH----TTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred             HHHHHH----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_conf             999987----14237889999997388878888878899999998866532-----------------------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01234567898899999765666555454433222211000000012578899987555545554332112378875300
Q gi|254781158|r  200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN  279 (631)
Q Consensus       200 ~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~  279 (631)
                          +.+.+++.++..||+.+...+..+....+.++.........      .....                      ..
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~----------------------~~  175 (408)
T 1m5y_A          128 ----RRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPT------SDQVN----------------------EA  175 (408)
T ss_dssp             ----HTCCCCTTHHHHHHHCC-------CCEEEEEEEEECCSSCC------HHHHH----------------------HH
T ss_pred             ----HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH------HHHHH----------------------HH
T ss_conf             ----10146635678999874310133103321111012333101------67899----------------------98


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCC
Q ss_conf             0014788875303651478877520112---3652453162322675677764202366722567861772112110233
Q gi|254781158|r  280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI  356 (631)
Q Consensus       280 ~~~A~~~~~~l~~g~~F~~la~~~~~~~---~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~  356 (631)
                      ...++......+.|.+|++++..++.+.   .++..||+..+.++ +.+...++.+ ++|++++|+....|||++++.+.
T Consensus       176 ~~~~~~~~~~~~~~~~F~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l-~~g~i~~~~~~~~~~~~~~~~~~  253 (408)
T 1m5y_A          176 ESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKVNDL  253 (408)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHTGGGTC-CTTCEEEEEEETTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHCC-HHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             877899999875100499998871236265526863323301100-1678887651-35764454235542799999987


Q ss_pred             CCHHHH-HHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             301344-554322--333345---67999988888655657765420110012455408532001344411234565432
Q gi|254781158|r  357 KPSFTV-SFQEVK--KDIANQ---MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV  430 (631)
Q Consensus       357 ~~~~~~-~~~evk--~~I~~~---l~~~~a~~~~~~~~~~i~d~~~~g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  430 (631)
                      ...... +.+.++  +.+...   -....+...+....   .+...++.+|.++|..++....+...    |.. .|...
T Consensus       254 ~~~~~~~~~~~v~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~F~~~a~~~s~d~~s~~~----gg~-lg~~~  325 (408)
T 1m5y_A          254 RGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIA---ADIKSGKTTFAAAAKEFSQDPGSANQ----GGD-LGWAT  325 (408)
T ss_dssp             CCCCCCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHH---HHHHTTSSCHHHHHHHHCCCTTTGGG----TTE-EEEEC
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHCCCCCCHHH----CCC-CCCCC
T ss_conf             62100133320203444414877633389999999999---99872632389999982889550420----575-66677


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21111168888753112346776511136974999998023223346678889999999999999999999999
Q gi|254781158|r  431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN  504 (631)
Q Consensus       431 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~a~  504 (631)
                      ++ ...++....+|+.+. +..+.++....| |.+++|.++.+.. .+++++|+.|...+..+++.+.......
T Consensus       326 ~~-~~~~~~~~ai~~l~~-G~is~pv~t~~G-~hii~v~~~~~~~-~~~~~~~~~i~~~l~~~k~~~~~~~~l~  395 (408)
T 1m5y_A          326 PD-IFDPAFRDALTRLNK-GQMSAPVHSSFG-WHLIELLDTRNVD-KTDAAQKDRAYRMLMNRKFSEEAASWMQ  395 (408)
T ss_dssp             GG-GSCHHHHHHHHTCCT-TCBCCCEECSSC-EEEEEEEEEEECC---------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHCCCC-CCCCCCEECCCE-EEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45-478899999981899-990874783884-8999998740688-8746579999999999999999999999