HHSEARCH alignment of GI: 254781158 and SCOP domain: d1m5ya3

Alignment
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=99.50  E-value=2.2e-15  Score=115.40  Aligned_cols=87  Identities=17%  Similarity=0.345  Sum_probs=71.4

Q ss_pred             HHHHHHHHH---------HHHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCC
Q ss_conf             237887530---------000147888753036-5147887752011----23652453162322675677764202366
Q gi|254781158|r  270 RTVEQLVFP---------NQKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK  335 (631)
Q Consensus       270 ~~~~~i~~~---------~~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~  335 (631)
                      .+++||+++         .++.++++..++..| .+|+++|+++|.+    ..||++||+..+.|+ ++|.+++|+| ++
T Consensus         7 v~vrHILi~~~~~~~~~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~-~~~~~~~~~l-~~   84 (108)
T d1m5ya3           7 VHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFD-PAFRDALTRL-NK   84 (108)
T ss_dssp             EEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSC-HHHHHHHHTC-CT
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHC-CC
T ss_conf             999999982899999999999999999999838552999998717587644333211212211024-7999999857-99


Q ss_pred             CCEEEEEEECCCCHHHHHCCCCC
Q ss_conf             72256786177211211023330
Q gi|254781158|r  336 GDFTPVIHGSFGYVIAHVSNIKP  358 (631)
Q Consensus       336 G~is~pv~t~~G~~iikv~~~~~  358 (631)
                      |++|+||+|++||||++|.+++.
T Consensus        85 GeiS~pi~t~~G~hIikl~~~r~  107 (108)
T d1m5ya3          85 GQMSAPVHSSFGWHLIELLDTRN  107 (108)
T ss_dssp             TCBCCCEECSSCEEEEEEEEEEE
T ss_pred             CCCCCCEEECCEEEEEEEEEEEC
T ss_conf             98786289599889999977843


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]