BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (631 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040835|gb|ACT57631.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 1286 bits (3327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 631/631 (100%), Positives = 631/631 (100%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA Sbjct: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 >gi|315122544|ref|YP_004063033.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495946|gb|ADR52545.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 632 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/633 (59%), Positives = 486/633 (76%), Gaps = 3/633 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLEIIRKASRTWVAKIFLVVLFVPF++WG+SDA FS SG STVVSVG QK+P S+FI W Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFIVWGVSDAFFSFSGKSTVVSVGNQKIPLSAFIQIW 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 QEL +S++IGF V ERARS LDKKI ++LV+GA +DQFIED GLEA RV+ I Sbjct: 61 TQELDALSRQIGFAVPPERARSAELDKKITEHLVAGAAIDQFIEDTGLEAPDSRVFEFIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F+GKD KFSH+VF+S+LA+EG++EKEY++ Y KM+SR+D+ MF+GG + S L + Sbjct: 121 SQPIFYGKDGKFSHEVFLSKLAQEGVSEKEYVETYKKMISRSDIAEMFIGGDKSSRFLAE 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R Y ENR+++Y+VLN VPA+ DP+ VL +WF K+K NYRAPEYK SYI DV+ Sbjct: 181 QMMRHYSENRTIEYVVLNAHDVPAVVDPAPVVLAEWFAKFKGNYRAPEYKSFSYIALDVN 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EKEK + ++ EL++EYEKNK +YFSPEIRTVEQLVFPNQKEA+EA +SLKKGKKFIQLA Sbjct: 241 EKEKNVVVTESELRSEYEKNKNQYFSPEIRTVEQLVFPNQKEAEEALKSLKKGKKFIQLA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +E+GKSLSDISLGSFSKEYIPD SLAD IF+LAK+GD+T +IHGSFGYVIAHVS IKPSF Sbjct: 301 KEKGKSLSDISLGSFSKEYIPDPSLADPIFALAKEGDYTSLIHGSFGYVIAHVSRIKPSF 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F+++KK I +++R+ KAS+ V E+YK+ ++ L+ G +M +I+ +EK DLP +++ Sbjct: 361 TTPFEQIKKSIEHKVRLAKASQVVLEEYKKAQDLLSSGKTMKDIATKEKFSFGDLPPLNY 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D+K + V IPYK+ LL R+F ++D L D+T+ LPDGSY+ ++KE IPARDRKLE Sbjct: 421 LGMDMKNRPVQKIPYKDHLLSRIFNQEDALVTDNTIQLPDGSYVIFKVKEVIPARDRKLE 480 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM--D 538 EVLT+VKKDWK+++ E V +KA LVL +K GK+F D+ +L + + I RM + Sbjct: 481 EVLTEVKKDWKSIQQTEAVLNKAQNLVLACNK-GKSFADMASSLRKFISVKSNITRMTKE 539 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 +E DGIS+VFSGPV MVK FPI+NG VVFKV SK+ P+ +K KFI L +M+ Sbjct: 540 SEEGILENDGISRVFSGPVGMVKSFPIKNGAEQVVFKVVRSKINPMDDKKKFILSLEKMI 599 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 KD+LDS IAYL+ QY V V+++LI +Y D K Sbjct: 600 GKDMLDSSIAYLRQQYPVYVNESLITKYFDQNK 632 >gi|241204737|ref|YP_002975833.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858627|gb|ACS56294.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 630 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 214/635 (33%), Positives = 364/635 (57%), Gaps = 19/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ L++L V F WG+S L + S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLLLLLVVSFGAWGVSHQLLTGGNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++F+SRL I + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGRFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L N ++ I P++ VL WFE K YRAPEY++++Y+ Sbjct: 181 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLAYLKLQPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLATAAETALKSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F++++ G TPV+ GSFG VI V+NIK Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSRDGGTTPVVDGSFGSVILRVTNIKSET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + K+ ++ + VD Sbjct: 361 AKNFDEVKEDIRKQLSLSNASQEVINVHDRIEDLRAGGSTLEDIAGQLKLKAVTVDAVDM 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474 G D G+EV IP K+QLL F G D P LP G+ Y+W ++E P Sbjct: 421 TGADKDGQEVKDIPVKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 RDR + EV +DW + E++ KA+ L E +K+G DI LG ++ + + + Sbjct: 474 RDRPVAEVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGV 532 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ G G++ FSGP++ V + + ++ KVT P + +D Sbjct: 533 TR-STDDAVLGRAGVTAAFSGPLDTVASAVGADPSTQILMKVTEVNTQPTGDVLNNRDAQ 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 I+ + D+LD ++ L++QY ++ L ++ Sbjct: 592 ITAMANAAGDDILDQMVNLLQTQYGAEINHTLAEQ 626 >gi|86357790|ref|YP_469682.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CFN 42] gi|86281892|gb|ABC90955.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CFN 42] Length = 646 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/631 (33%), Positives = 362/631 (57%), Gaps = 11/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG QKV + F ++ Sbjct: 17 MFHLLRRAAQTWVAKLLLLLLVASFGIWGISRELISGGSSTTVVTVGDQKVGVTEFQLAY 76 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ I Q+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I Sbjct: 77 QRQVTSIGQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 136 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLID 196 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L N ++ I P++ VL WFE K YRAPEY+++ Y+ Sbjct: 197 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLASWFEGVKQRYRAPEYRKLIYLKLQPA 256 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ +EK K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 257 DIADAATVTDDQIREAFEKGKDSYRTPESRTIEQLTFASKDLATAAETALKGGTSFDQLL 316 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIKP Sbjct: 317 TDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKPET 376 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + K+ ++ + VD Sbjct: 377 VKNFDEVKEDIRKQLALSNASQEVINVHDRIEDMRAGGSTLEDIAGQLKLKAVTVDAVDA 436 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRK 478 G D GKEV +P K+QLL F + + D + LP G+ Y+W ++E P RDR Sbjct: 437 TGVDKDGKEVKDLPAKQQLLGEAFKTE--VGVDAS-PLPIGNDGYVWFNVREITPDRDRP 493 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 + EV +DW + E++ KA +L + K G DI LG ++ + + I R Sbjct: 494 IAEVREKAVEDWTAEQQKAELAKKAEELKAQAQK-GAALADIAAPLGIAVESKSGITR-S 551 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYL 594 ++ G + FSGPV+ V + + ++ KVT P + +D ++ + Sbjct: 552 TDDPVLGRAAVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTSDVLNNRDAQLTAM 611 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 D+LD ++ L++QY +++ L ++ Sbjct: 612 ANAAGDDILDQMVNLLQTQYGASINQTLAEQ 642 >gi|116252238|ref|YP_768076.1| peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv. viciae 3841] gi|115256886|emb|CAK07980.1| putative peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv. viciae 3841] Length = 630 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 215/635 (33%), Positives = 363/635 (57%), Gaps = 19/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ L++L F +WG+S L S S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLLLLLVASFGVWGVSHELLSGGNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++F+SRL GI + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGRFDRELFISRLQNAGIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RSV+Y++L N ++ I P++ VL WFE K YRAPEY+++ Y+ Sbjct: 181 ALKLYGDESRSVEYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLVYLKLQPG 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLAAAAETALKSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+++ +PD ++AD+ F++++ G TPV+ GSFG VI V+NIK Sbjct: 301 SDQGKTASDVLLGEFTEDKVPDQAVADAAFAVSRDGGTTPVVDGSFGPVILRVTNIKSET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + + ++ + VD Sbjct: 361 AKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGSTLEDIAGQLNLKAMTVDAVDM 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474 G D GKEV IP K+QLL F G D P LP G+ Y+W ++E P Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 RDR + EV +DW + E++ KA+ L E +K+G DI LG ++ + + + Sbjct: 474 RDRPVTEVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGV 532 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ G G++ FSGPV+ V + + ++ KVT P + +D Sbjct: 533 TR-STDDAVLGRAGVTAAFSGPVDTVASAVGADPSTQILLKVTEVNTQPTGDVLNNRDAQ 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 I+ + D+LD ++ L++QY ++ L ++ Sbjct: 592 ITAMANAAGDDILDQMVNLLQTQYGAQINQTLAEQ 626 >gi|209549414|ref|YP_002281331.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535170|gb|ACI55105.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 630 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/635 (33%), Positives = 362/635 (57%), Gaps = 19/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ +++L F IWG+S +L + S S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGSNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + Q+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVASLGQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + KF ++F+SRL I + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLID 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L N ++ I P++ VL WF+ K Y+APEY+++ Y+ Sbjct: 181 ALKLYGNESRSIDYLLLTNANIEPIKAPADDVLAAWFDGVKQRYQAPEYRKLVYLSLQPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFTSKDLAVAAETALKGGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIKP Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVEGSFGSVILRITNIKPET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T +F EVK+DI Q+ ++ AS++V + R+E+ A G ++++I+ + K+ ++ + VD Sbjct: 361 TKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLKAVTVDAVDM 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474 G D GKEV IP K+QLL F G D P LP G+ Y+W ++E P Sbjct: 421 TGADKDGKEVKDIPVKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPT 473 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R+R + EV +DW T + + +K + + + +G DI LG ++ + + + Sbjct: 474 RERPVAEVREKAVEDW-TAEQQKAELAKKAEALKAEAAKGTALADIATPLGIAVESKSGV 532 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKF 590 R ++ G G++ FSGPV+ V + + ++ KVT P + +D Sbjct: 533 TRA-TDDPVLGRAGVTAAFSGPVDAVASAVGADPSTQILMKVTEVNSEPTSDALNNRDAQ 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 I+ + D+LD ++ L++QY ++ L ++ Sbjct: 592 ITAMANAAGDDILDQMVNLLQTQYGAQINQTLAEQ 626 >gi|190891851|ref|YP_001978393.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 652] gi|190697130|gb|ACE91215.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 652] Length = 630 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/635 (34%), Positives = 359/635 (56%), Gaps = 19/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG Q V + F ++ Sbjct: 1 MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RSVDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+ Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIK Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T +F EVK +I Q+ ++ AS++V + +E+ A G ++++I+ + K+ ++ + VD Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDHIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474 G D GKEV IP K+QLL F G D P LP G+ Y+W ++E P Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 RDR + EV +DW + E++ KA++L E K G DI LG ++ + + I Sbjct: 474 RDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGI 532 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ G G+ FSGPV+ V + + ++ KVT P + +D Sbjct: 533 TR-STDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQ 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ + D+LD ++ L++QY V+ L ++ Sbjct: 592 LTAMANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626 >gi|327192898|gb|EGE59819.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CNPAF512] Length = 630 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 220/635 (34%), Positives = 361/635 (56%), Gaps = 19/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG Q V + F ++ Sbjct: 1 MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RSVDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+ Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPT 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +L G F QL Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALNSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G T V+ GSFG VI ++NIK Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTSVVDGSFGPVILRITNIKAET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T +F EVK +I Q+ ++ AS++V + R+E+ A G ++++I+ + K+ ++ + VD Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474 G D GKEV IP K+QLL F G D P LP G+ Y+W ++E P Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 473 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 RDR + EV +DW + E++ KA++L E K G DI LG ++ + + I Sbjct: 474 RDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGI 532 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT--NSK-VGPV-QEKDKF 590 R ++ G G+ FSGPV+ V + + ++ KVT NS+ G V +D Sbjct: 533 TR-STDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQSTGDVLNNRDAQ 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ + D+LD ++ L++QY V+ L ++ Sbjct: 592 LTAMANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626 >gi|222086022|ref|YP_002544554.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Agrobacterium radiobacter K84] gi|221723470|gb|ACM26626.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Agrobacterium radiobacter K84] Length = 630 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/631 (32%), Positives = 348/631 (55%), Gaps = 7/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +++RK ++TWVAK V+L F IWG+ + + S+ VV+VG QK+ + F ++ Sbjct: 1 MFDVLRKLAKTWVAKGIFVLLIAAFSIWGIESRMVTGGSSNAVVTVGDQKIDTNEFRLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ISQ++ + E+AR+ G+ ++ + LV+GA+LDQ D+ L R+ I Sbjct: 61 RRQIQAISQQLRMQITPEQARAFGIAQQTVAQLVAGASLDQLASDMNLGLSQDRLAQLIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + F F S L IN +YI +K+ R+ +V G L+D Sbjct: 121 DDPAFKALNGTFDRQKFESLLRNSNINPDDYIKERSKVAVRSQIVEAVSNGFVAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K+++ E+RS+DY++L N ++ I P++ VL++WF+ K +RAPEY++ SY+ Sbjct: 181 AVKQYHDESRSIDYLLLTNANIDPIKAPADDVLSKWFDGVKSKFRAPEYRKFSYVKLQAE 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D +AE+EK K + +P RT+EQL F N+ A+ A +LK G F QL Sbjct: 241 DIADPASVTDDAARAEFEKRKNSFTTPATRTIEQLTFANKDLANAASDALKTGTTFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK +D+ LG+F+KE +PD +LA + F++AK+G TPV+ GSFG VI V+N+K Sbjct: 301 TDQGKKPADVLLGTFTKEQVPDQTLAQAAFAVAKEGGTTPVVDGSFGPVILRVTNVKDET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F +VK+DI Q+ + A+ + + + E+ G S+ E +++ + +I + +D Sbjct: 361 AKNFDDVKEDIRKQIALNAAASDITSIHDKFEDLRGSGVSLQEAAQQLNLKAITVDAIDS 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D G E+ +P ++QLL VF K D S + + + Y+W + P RDR L Sbjct: 421 TGLDQAGNEIKDLPARQQLLGEVF-KADQGSNAAPLTVGNDGYVWYDVLGLTPDRDRPLA 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV DW + +++KAN+L E K GK+ DI LG ++ + + R + Sbjct: 480 EVREKAVVDWTAEQQKIALAAKANELKQEAQK-GKSLADIATPLGIAVESKADVTRT-TD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596 + G G++ FSGP++ + + ++ KVT+ P + +D+ + + Sbjct: 538 DPVLGRAGVAAAFSGPIDTAANAIGADDTTQILLKVTDVNNNPTTDALSNQDQQATQIAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD ++A L+S+Y+VTV+ NL ++ + Sbjct: 598 AAGDDILDQIVADLQSKYTVTVNQNLAEQAM 628 >gi|222148891|ref|YP_002549848.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4] gi|221735877|gb|ACM36840.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4] Length = 629 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 206/634 (32%), Positives = 345/634 (54%), Gaps = 14/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML I+RKA+ TWVAK L++L F IWG+S ++ S + S V+ VG Q V + F ++ Sbjct: 1 MLVILRKAAGTWVAKGLLLLLVASFAIWGISSSIMSDT-SDKVIKVGSQSVNSNEFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S++ G + SE+ARS+G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 QRQISDLSRRFGTQLTSEQARSLGIESQVYQQLVAGAALDQLASDMNLGLSQDRLAQLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F +F SRL GI E++YI +K+ R+ +V G P +L+D Sbjct: 120 DDPAFKNTNGQFDRQLFTSRLRNSGIREQDYITERSKVAVRSQIVDATAEGFVPPKVLID 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L ++ I P VL WF K YRAPEY+ SY+ + Sbjct: 180 ALKLYRQESRSIDYLLLTTANIDPIKAPDETVLKTWFNTMKSRYRAPEYRSFSYVKLEPA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++++++ EY+ N +K+ RT+EQL FP ++ A+ A QSLK GK F QL Sbjct: 240 DIADPKAVTDEQVKQEYDANLKKFEVAGTRTLEQLTFPTKELAETAAQSLKNGKTFDQLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ +D+ LG F++ IPD LAD+ F++AK D TPV+ G+FG VI VSNIKPS Sbjct: 300 ADQGKTATDVLLGDFTRADIPDQKLADAAFAVAKDSDTTPVVEGAFGPVILRVSNIKPSH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T + EVK I + A++++ + + R E+ A G+S++E + + + +I + +D Sbjct: 360 TKTLDEVKDQIRADLAANAAAQQINDVHDRFEDMRASGSSLEEAATKAGLKAIKIDGIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD---DPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G+D GK+ +P K LL VF + +PL + + Y+W + +R+R Sbjct: 420 QGQDKTGKQAENLPEKANLLKSVFETEAGAEPLP----LNIGRNGYLWFDVTSIDASRER 475 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L+EV DW T + + + +K QL + + G D+ L + T + R Sbjct: 476 TLDEVKDKAVSDWTTEQQKQALGAKVEQLKAK-ADTGVALADLATELAIGVETKAGLRR- 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593 D E+ G + F GP + + ++ ++ KVT+ P V +++ I+ Sbjct: 534 DTEDPVLGPAAVQAAFRGPSGTIGSAVGADPMTQILLKVTDVNTQPTGDVVDQQESQITA 593 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+LD ++ L+++Y VT++ L Q+ + Sbjct: 594 LAKSAGDDILDQMVNQLQTKYGVTINQALAQQAI 627 >gi|218675330|ref|ZP_03524999.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli GR56] Length = 579 Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 197/566 (34%), Positives = 328/566 (57%), Gaps = 15/566 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +R+A++TWVAK+ L++L F +WG+S L S S+TVV+VG Q+V + F ++ Sbjct: 17 MFHFLRRAAQTWVAKLLLLLLVASFGVWGVSRELISGGNSTTVVTVGDQRVGVNEFHLAY 76 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + Q+ G + E+AR+ G+++++L L++GA+LDQ D+ L R+ I Sbjct: 77 QRQVASLGQQFGMRLTPEQARAFGVEQQVLSQLIAGASLDQLAADMNLGLSEDRLAQLIG 136 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL I++ +YI +K+ R+ +V G L+D Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNANIHQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 196 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+R+VDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+ Sbjct: 197 AMKLYGDESRAVDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKIAYLKLQPA 256 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 257 DIADVASVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 316 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIK Sbjct: 317 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 376 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK++I Q+ ++ AS++V + ++E+ A G ++++I+ + K+ ++ + VD Sbjct: 377 VKNFDEVKEEIRKQLALSNASQEVINVHDQIEDLRAGGATLEDIAAQLKLKAMTVDAVDA 436 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESIPA 474 G D GKEV P K+QLL F G D P LP G+ Y+W ++E P Sbjct: 437 TGADKDGKEVKDTPVKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREITPD 489 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 RDR + EV +DW + E++ KA++L E K G DI LG ++ + + I Sbjct: 490 RDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIAAPLGIAVESKSSI 548 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV 560 R ++ G G+ FSGPV+ V Sbjct: 549 TR-STDDAVLGRAGVKAAFSGPVDTV 573 >gi|15965412|ref|NP_385765.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti 1021] gi|15074593|emb|CAC46238.1| Putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium meliloti 1021] Length = 630 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 206/634 (32%), Positives = 352/634 (55%), Gaps = 14/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++ Sbjct: 1 MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ++S+++G ++ ++A++ G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L+D Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R++DY++L+N ++ A+ P + VL WFE K NYRAPEY++ISYI + Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++++EL+A+YEK KE Y +P RTVEQL FP+++ AD A L G F L Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G+FG VI V+NI+P Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF EVK+++ ++ + A E++ + ++E+ A G S+ EI+ + K+ + + VD Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWVQIKESIPARDR 477 +GKD G EV +P LL VF D + D T+A+ DGS W ++E IPARDR Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKAD--VGTD-TLAVNIGRDGS-AWFDVEEIIPARDR 475 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L+EV +V DW T + + + + E ++G DI LG + + + R Sbjct: 476 TLDEVRDEVAADW-TAEQQRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRA 534 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISY 593 N+ I+ F+GP V P G V+ +VT + + I Sbjct: 535 TNDATLSPAAVIA-AFAGPNGHVANAPGIGGDGQVLMQVTAVEDQAPADALDNDSSQIEA 593 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + D+LD +++ L++ Y V+++ +L + L Sbjct: 594 IARASGDDILDQMVSTLQTAYGVSINQSLAETAL 627 >gi|307310586|ref|ZP_07590233.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti BL225C] gi|307320968|ref|ZP_07600375.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti AK83] gi|306893342|gb|EFN24121.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti AK83] gi|306899696|gb|EFN30322.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti BL225C] Length = 630 Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 206/634 (32%), Positives = 352/634 (55%), Gaps = 14/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++ Sbjct: 1 MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ++S+++G ++ ++A++ G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L+D Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R++DY++L+N ++ A+ P + VL WFE K NYRAPEY++ISYI + Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++++EL+A+YEK KE Y +P RTVEQL FP+++ AD A L G F L Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G+FG VI V+NI+P Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF EVK+++ ++ + A E++ + ++E+ A G S+ EI+ + K+ + + VD Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWVQIKESIPARDR 477 +GKD G EV +P LL VF D + D T+A+ DGS W ++E IPARDR Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKAD--VGTD-TLAVNIGRDGS-AWFDVEEIIPARDR 475 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L+EV +V DW T + + + + E ++G DI LG + + + R Sbjct: 476 TLDEVRDEVAADW-TAEQQRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRA 534 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISY 593 N+ I+ F+GP V P G V+ +VT + + I Sbjct: 535 TNDATLSPAAVIA-AFAGPNGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSSQIEA 593 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + D+LD +++ L++ Y V+++ +L + L Sbjct: 594 IARASGDDILDQMVSTLQTAYGVSINQSLAETAL 627 >gi|15888991|ref|NP_354672.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens str. C58] gi|15156777|gb|AAK87457.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens str. C58] Length = 630 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 193/634 (30%), Positives = 350/634 (55%), Gaps = 10/634 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R ASRT AK+ L++L V F +WG+S +L + + S V++VG Q V F ++ Sbjct: 1 MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVTAN-SHAVMTVGDQTVSPQEFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S++ G + +E+A++ G+D+++ L +GA LD+ + L R+ IA Sbjct: 60 QRQVSDLSRQFGTRLTTEQAKAFGIDRQVFSQLAAGAALDELASKMNLGLSENRLANLIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++F RL G E +YI +K+ R+ +V G +L+D Sbjct: 120 EDPAFKSVNGQFDRNLFSERLRNSGFREDDYIKERSKVAVRSQIVEAVSDGFAAPQVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K++ E R+VDY++L+N +P + P + VLT WFE K YRAPE+++ +Y+ + Sbjct: 180 ALKQYRNEQRAVDYVILSNAVIPPVKAPGDDVLTPWFETNKSKYRAPEFRKFTYVKLEPS 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299 + + +++ ++ Y +K+ + + RTVEQL FP+++ A A + ++ G + Q+ Sbjct: 240 DIAEPASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPDKEMAAAAAEQIRLGNTTYDQV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G +PV+ GSFG ++ V+ IKP Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAIQKDGGVSPVVDGSFGPILLRVTGIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T + E K+DI + A+E++ + R E+ A G+S+ + +++ + + + +D Sbjct: 360 TTRTLDEAKEDIRKDLATAAAAEEITNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 AG + KG + +P QL VF K +P + + L Y+W +++ IPARDR L Sbjct: 420 AAGLNEKGDAIEGLP-SPQLAQDVF-KTEPGTDALPINLGREGYIWFDVEQIIPARDRTL 477 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV DV DW + +++KA++L K G+ + L ++ + + R + Sbjct: 478 AEVRDDVVADWTAEQQRTALAAKADELKARVEK-GETLEAVAGELSLAVEQKSGLRRT-S 535 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYLT 595 E+ FG I+ VFSG +V +G S ++FKVT N+ + D+ + + Sbjct: 536 EDAIFGRQTIAAVFSGAEGVVGTAADADGSSRILFKVTSVDANAPADALANDDQQFTAIA 595 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + D+LD ++ L++ Y VT++ L + + G Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629 >gi|325293071|ref|YP_004278935.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3] gi|325060924|gb|ADY64615.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3] Length = 630 Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 197/634 (31%), Positives = 351/634 (55%), Gaps = 10/634 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R ASRT AK+ L++L V F +WG+S +L + S S V++VG Q V F ++ Sbjct: 1 MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVT-SNSHAVMTVGDQTVSPQEFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S++ G + +E+A++ G+D+++ L +GA+LD+ + L R+ IA Sbjct: 60 QRQVSDLSRQFGARLTTEQAKAFGIDRQVFSQLAAGASLDELASKMNLGLSEDRLANLIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F +F RL G+ E +YI +K+ R+ +V G + +L+D Sbjct: 120 EDPAFKSVNGQFDRTLFTERLRNSGLREDDYIKERSKVAVRSQIVEAVSDGFKAPQVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K++ E RSVDY++L+N + + P + VL WFE K YRAPE+++ +Y+ + Sbjct: 180 ALKQYRNEQRSVDYVILSNAVIAPVKAPGDDVLAPWFETNKAKYRAPEFRKFTYVKLEPS 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299 + + +++ ++ Y +K+ + + RTVEQL FP ++ A+ A + ++ G + Q+ Sbjct: 240 DIADQASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPEKEMAEAAAEQIRLGNTTYDQV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G +PV+ GSFG VI ++ IKP Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAVQKDGGVSPVVAGSFGPVILRITGIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T + +E K+DI + A+E+V + R E+ A G+S+ + +++ + + + +D Sbjct: 360 TTRTLEEAKEDIRKDLATAAAAEEVTNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 AG D KG + +P QL VF K +P ++ + L Y+W + + IPARDR L Sbjct: 420 AAGLDEKGDAIQDLP-SPQLAQEVF-KTEPGTEALPINLGREGYIWFDVDQIIPARDRTL 477 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV DV DW + +++KA++L K G+ + LG ++ + + R + Sbjct: 478 AEVRDDVVADWTAEQQRTALATKADELKARVEK-GETLAAVAGELGLAVEQKSGLRRT-S 535 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV----TNSKVGPVQEKDKFISYLT 595 E+ FG I+ VFSG M +G S ++FKV TN+ + D+ + + Sbjct: 536 EDAIFGRQTITAVFSGAEGMTGTAADADGSSRILFKVTAVDTNAPADALANDDQQFAAIA 595 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + D+LD ++ L++ Y VT++ L + + G Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629 >gi|163760078|ref|ZP_02167161.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43] gi|162282477|gb|EDQ32765.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43] Length = 651 Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 189/634 (29%), Positives = 354/634 (55%), Gaps = 14/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++WVA+ LV+L F +WG+S ++ + GS+ VV+VG +V + F ++ Sbjct: 23 MLDTLRKGAKSWVAQFLLVLLVASFAVWGISGSILNAGGSA-VVTVGDTEVSPNEFRLAY 81 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q++G + E+AR+ G++ ++ L++GA LD+ ++ L R+ IA Sbjct: 82 DRQMAAVGQQLGTRLTQEQARAFGIENQVYSQLIAGALLDEQAREMNLGLSDSRLAALIA 141 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + FH +++F +F L G++E++YI +++ RT +V G + ++ Sbjct: 142 QDAAFHDFNSRFDRSIFRRVLNSVGMSEEDYIRSRSQVAVRTQIVEAVAEGFDAPDAMIS 201 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R V+Y++L ++ + PS+ L+ +FE K Y APEY++ +Y+ + Sbjct: 202 ALAQYEAETRDVNYLLLTKANIDPVPAPSDDELSAFFESNKTRYAAPEYRKFTYVKLESE 261 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + IS++ +A+YE K +Y + E RT++QLVF +++ A+ A L GK F L Sbjct: 262 DIADPAAISDEMARADYEARKNRYTTAETRTIDQLVFADREAAEAAEAELASGKSFDTLI 321 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QG++ +D+ LGSF++E +PD SLAD+ F++ G +PV+ G FG VI V+ I P Sbjct: 322 TDQGRTAADVRLGSFTEETVPDQSLADAAFAITDAGGVSPVVDGQFGPVILRVAEITPES 381 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + SF+EV+ +I +++ + +A++ + + + E+ A G ++ E + ++K+ + + D Sbjct: 382 SRSFEEVQTEIRDELALAEAAQVLLDVHDAYEDARAGGMTLMEAATQQKLTPVTIEAADR 441 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +G+ G ++ +P +QLL VF + +P + ++L ++W ++++ PARDR L+ Sbjct: 442 SGQTPDGTVLSELPQSQQLLRDVF-ETEPGVEAPPISLGVEGFVWFEVEDVTPARDRTLD 500 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DW + + E + +KA L E + G + I L ++ T +NR D Sbjct: 501 EVREQVVADWSSEQELEALGAKATAL-QERLERGADLSAIAAELSIAVETKFSLNRTDT- 558 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT--NSKVGPV-----QEKDKFISY 593 + FG ++ FSGP +V +G + ++ +VT N G QE+ IS Sbjct: 559 DPVFGEAAVAAAFSGPQGLVTVANDTSGDNKILIQVTSVNDASGTTADSVSQEQRDQIS- 617 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 Q + D+LD V+A L+++Y V+V+ L +R L Sbjct: 618 --QQIADDILDQVVAQLQAEYGVSVNRELAERAL 649 >gi|227822015|ref|YP_002825986.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234] gi|227341015|gb|ACP25233.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234] Length = 630 Score = 330 bits (846), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 194/633 (30%), Positives = 341/633 (53%), Gaps = 12/633 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T + K L +L + F++WG L S VV+VG KV S + ++ Sbjct: 1 MLDSLRNAAQTRIVKGLLAILILSFMVWG-GQTLMVTGTSDAVVTVGDVKVSTSDYRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++L ++S+++G + ++AR+ G++ ++ LV+GA LDQ ED+ L R+ I Sbjct: 60 ERQLSLLSRQLGTPLTRQQARAFGVEAQVYSQLVAGAALDQLAEDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI + +++ R+ +V G +L+D Sbjct: 120 EDPAFHGANGQFDRMTFSSVLRNAGLTEQDYIKNRSQVAVRSQIVDALSDGFAAPAILVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R++DY++L+N ++ A+ P + VL WFE +K NYRAPEY++ SYI + Sbjct: 180 AVGKYRHETRTIDYLLLSNANIDAVKAPGDDVLAPWFESHKANYRAPEYRKFSYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++++EL+A+YEK KE + + RT+EQL FP+++ AD L G F L Sbjct: 240 DLVVNDAVTDEELRADYEKRKESFRTAATRTIEQLAFPSREAADAGAAKLSAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GKS +D+ LG F+KE +PD A++ F++A G TPV+ G+FG VI V+NI+ Sbjct: 300 KAEGKSAADVLLGDFTKERMPDQKAAEAAFAVASDGGVTPVVEGAFGPVILRVTNIRQET 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF EVK+++ + ++ A +++ + ++E+ A G ++ E++ + K+ + +D Sbjct: 360 VRSFDEVKEELRKDIALSVARDQLVGLHDKIEDERAAGATVKEVADQLKLKLATVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKESIPARDRK 478 GKD G +V +P + LL VF + L T+A+ G Y W ++E IPARDR Sbjct: 420 TGKDQNGDDVTGLPEQRALLQDVFKAEVGL---ETLAVHIGRDGYAWFDLEEVIPARDRT 476 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L+EV +V DW T + + + + K+G DI LG + T ++R Sbjct: 477 LDEVRDEVAADW-TAEQQRVALAAKAAELKDRVKKGAKLADIAGELGLVVETKTGLSR-S 534 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYL 594 ++ I+ F GP V ++ +VT ++ + + I + Sbjct: 535 TQDAALSEAAIAAAFGGPNGHVANAAGMGSEGQILMQVTAVDDSAPANALDNDSRQIEAI 594 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+LD ++A L+S Y V+++ L ++ L Sbjct: 595 ARASGDDILDQMVATLQSVYGVSINQTLAEQAL 627 >gi|150396621|ref|YP_001327088.1| putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae WSM419] gi|150028136|gb|ABR60253.1| putative peptidyl-prolyl CIS-trans isomerase protein [Sinorhizobium medicae WSM419] Length = 630 Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 193/631 (30%), Positives = 341/631 (54%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++ Sbjct: 1 MLDSLRNAAQTRVVKALLALLILSFMVWG-GQTLMVPNTPNAVVTVGDIKVSPSDFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ++S+++G + ++A++ G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 ERQVALLSRQLGTPLTRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L++ Sbjct: 120 EDPAFHGVNGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R+VDY++L+N ++ A+ P + VL WFE K NYRAPEY++ SYI + Sbjct: 180 AVDKYRHETRTVDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKFSYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ +EL+A+Y+K KE + +P RTVEQL FP+++ AD A L G F L Sbjct: 240 DLAASDSVTEEELRADYDKRKESFRTPATRTVEQLAFPSREAADAAAAKLSAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G FG VI V+NI+ Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVDGPFGPVILRVTNIRSEA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 S+ EVK+++ ++ + A +++ + ++E+ A G ++ EI+ + K+ + + VD Sbjct: 360 VRSYDEVKEELRKEIALDAARDQLVGLHDKIEDERAGGVTVKEIAEQLKLKLVTVVAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G +V +P LL VF K D + +V + +W ++E IP RDR L+ Sbjct: 420 SGKDQNGDDVKDLPEPRALLQEVF-KADVGTDTLSVNIGRDGSVWFDVEEIIPGRDRTLD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +V DW T + + + + E ++G DI LG + T + R N+ Sbjct: 479 EVRDEVAADW-TAEQQRAALAAKAKELKERVEKGAKLADIASELGLVVETKTGLTRSTND 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYLTQ 596 I+ F G V P G V+ +VT + + + I + + Sbjct: 538 ATLSPAAVIA-AFGGANGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSRQIEAIAR 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD +++ L++ Y V+++ L + L Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQTLAETAL 627 >gi|148560591|ref|YP_001259060.1| rotamase family protein [Brucella ovis ATCC 25840] gi|148371848|gb|ABQ61827.1| rotamase family protein [Brucella ovis ATCC 25840] Length = 628 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 187/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 S EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKSLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|256061222|ref|ZP_05451373.1| rotamase family protein [Brucella neotomae 5K33] gi|261325229|ref|ZP_05964426.1| rotamase [Brucella neotomae 5K33] gi|261301209|gb|EEY04706.1| rotamase [Brucella neotomae 5K33] Length = 628 Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 187/634 (29%), Positives = 323/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++TW+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQTWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQKRSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|306844003|ref|ZP_07476598.1| rotamase family protein [Brucella sp. BO1] gi|306275758|gb|EFM57482.1| rotamase family protein [Brucella sp. BO1] Length = 628 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 187/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ GSFG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGSFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDVLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|225627608|ref|ZP_03785645.1| rotamase family protein [Brucella ceti str. Cudo] gi|256159868|ref|ZP_05457597.1| rotamase family protein [Brucella ceti M490/95/1] gi|256255110|ref|ZP_05460646.1| rotamase family protein [Brucella ceti B1/94] gi|260168841|ref|ZP_05755652.1| rotamase family protein [Brucella sp. F5/99] gi|261222305|ref|ZP_05936586.1| rotamase [Brucella ceti B1/94] gi|261758329|ref|ZP_06002038.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99] gi|265998269|ref|ZP_06110826.1| rotamase [Brucella ceti M490/95/1] gi|225617613|gb|EEH14658.1| rotamase family protein [Brucella ceti str. Cudo] gi|260920889|gb|EEX87542.1| rotamase [Brucella ceti B1/94] gi|261738313|gb|EEY26309.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99] gi|262552737|gb|EEZ08727.1| rotamase [Brucella ceti M490/95/1] Length = 628 Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 186/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT ++ GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTESAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|306841864|ref|ZP_07474544.1| rotamase family protein [Brucella sp. BO2] gi|306287994|gb|EFM59396.1| rotamase family protein [Brucella sp. BO2] Length = 628 Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 188/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEVHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q +K G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIKAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ V E K G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRVEELKKRLEGGTTLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDVLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|23502017|ref|NP_698144.1| rotamase family protein [Brucella suis 1330] gi|161619091|ref|YP_001592978.1| rotamase family protein [Brucella canis ATCC 23365] gi|254704427|ref|ZP_05166255.1| rotamase family protein [Brucella suis bv. 3 str. 686] gi|254710215|ref|ZP_05172026.1| rotamase family protein [Brucella pinnipedialis B2/94] gi|256031709|ref|ZP_05445323.1| rotamase family protein [Brucella pinnipedialis M292/94/1] gi|256369565|ref|YP_003107075.1| rotamase family protein [Brucella microti CCM 4915] gi|260566326|ref|ZP_05836796.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40] gi|261317773|ref|ZP_05956970.1| rotamase [Brucella pinnipedialis B2/94] gi|261755104|ref|ZP_05998813.1| rotamase [Brucella suis bv. 3 str. 686] gi|265988804|ref|ZP_06101361.1| rotamase [Brucella pinnipedialis M292/94/1] gi|23347969|gb|AAN30059.1| rotamase family protein [Brucella suis 1330] gi|161335902|gb|ABX62207.1| rotamase family protein [Brucella canis ATCC 23365] gi|255999727|gb|ACU48126.1| rotamase family protein [Brucella microti CCM 4915] gi|260155844|gb|EEW90924.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40] gi|261296996|gb|EEY00493.1| rotamase [Brucella pinnipedialis B2/94] gi|261744857|gb|EEY32783.1| rotamase [Brucella suis bv. 3 str. 686] gi|264661001|gb|EEZ31262.1| rotamase [Brucella pinnipedialis M292/94/1] Length = 628 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 186/634 (29%), Positives = 323/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|254714212|ref|ZP_05176023.1| rotamase family protein [Brucella ceti M644/93/1] gi|254717648|ref|ZP_05179459.1| rotamase family protein [Brucella ceti M13/05/1] gi|261219487|ref|ZP_05933768.1| rotamase [Brucella ceti M13/05/1] gi|261321982|ref|ZP_05961179.1| rotamase [Brucella ceti M644/93/1] gi|260924576|gb|EEX91144.1| rotamase [Brucella ceti M13/05/1] gi|261294672|gb|EEX98168.1| rotamase [Brucella ceti M644/93/1] Length = 628 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 185/634 (29%), Positives = 324/634 (51%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G L++ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLNEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G+FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGNFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|62290052|ref|YP_221845.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941] gi|82699979|ref|YP_414553.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar Abortus 2308] gi|189024292|ref|YP_001935060.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19] gi|237815561|ref|ZP_04594558.1| rotamase family protein [Brucella abortus str. 2308 A] gi|254689364|ref|ZP_05152618.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 6 str. 870] gi|254697497|ref|ZP_05159325.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 2 str. 86/8/59] gi|254730394|ref|ZP_05188972.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 4 str. 292] gi|256257610|ref|ZP_05463146.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 9 str. C68] gi|260546604|ref|ZP_05822343.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038] gi|260754881|ref|ZP_05867229.1| rotamase [Brucella abortus bv. 6 str. 870] gi|260758098|ref|ZP_05870446.1| rotamase [Brucella abortus bv. 4 str. 292] gi|260761922|ref|ZP_05874265.1| rotamase [Brucella abortus bv. 2 str. 86/8/59] gi|260883893|ref|ZP_05895507.1| rotamase [Brucella abortus bv. 9 str. C68] gi|297248452|ref|ZP_06932170.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str. B3196] gi|62196184|gb|AAX74484.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941] gi|82616080|emb|CAJ11118.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar Abortus 2308] gi|189019864|gb|ACD72586.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19] gi|237788859|gb|EEP63070.1| rotamase family protein [Brucella abortus str. 2308 A] gi|260095654|gb|EEW79531.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038] gi|260668416|gb|EEX55356.1| rotamase [Brucella abortus bv. 4 str. 292] gi|260672354|gb|EEX59175.1| rotamase [Brucella abortus bv. 2 str. 86/8/59] gi|260674989|gb|EEX61810.1| rotamase [Brucella abortus bv. 6 str. 870] gi|260873421|gb|EEX80490.1| rotamase [Brucella abortus bv. 9 str. C68] gi|297175621|gb|EFH34968.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str. B3196] Length = 628 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 185/630 (29%), Positives = 322/630 (51%), Gaps = 15/630 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L + D+L ++ L+ QY V V+ +I Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVI 622 >gi|254701881|ref|ZP_05163709.1| rotamase family protein [Brucella suis bv. 5 str. 513] gi|261752444|ref|ZP_05996153.1| rotamase [Brucella suis bv. 5 str. 513] gi|261742197|gb|EEY30123.1| rotamase [Brucella suis bv. 5 str. 513] Length = 628 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 186/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAACNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGLAATEQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|294852479|ref|ZP_06793152.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026] gi|294821068|gb|EFG38067.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026] Length = 628 Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 185/634 (29%), Positives = 323/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + I ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSSIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAKKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|110633989|ref|YP_674197.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium sp. BNC1] gi|110284973|gb|ABG63032.1| peptidyl-prolyl cis-trans isomerase D [Chelativorans sp. BNC1] Length = 628 Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 183/631 (29%), Positives = 327/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RKA+ TWVAK+ LVVL V F +WG+S ++ + + S V++ G V + ++ Sbjct: 1 MLDSLRKAATTWVAKLLLVVLVVSFAVWGISGSMLTGT-SGDVITAGGTSVSALDYRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +S++ G + E+A + G+D+++L L +GA LD+ +IGL ++ A Sbjct: 60 DRRIAELSRQFGTRLTREQAVAFGIDEQVLSQLSAGAVLDETAREIGLGVSKDKLAELTA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G D +F F L+R G+ ++Y+ + + R ++ G+ + LL Sbjct: 120 SDPAFRGLDGRFDRSQFEFVLSRIGMRPEDYLKNREQAAVRQQIIDAVASGVSAPDELLR 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R+ E+R+++Y+ L V + PS+ L WFE+ KDNY APEY++I Y+ + Sbjct: 180 SLARYRGEDRTIEYVALPRSAVEPVEPPSDEQLQTWFEERKDNYAAPEYRKIEYVKLEAE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + IS++++++ Y++N+ +Y +PE R VEQL F + +EA A +S++ G F L Sbjct: 240 DIADPSVISDEQVESYYQQNQAQYTTPERRQVEQLTFASAEEATAARESMRTGTTFEDLI 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E QGK L D+SLG+ ++ IPD +AD++FSL + + V+ G+FG V+ V+ I P Sbjct: 300 ERQGKKLQDVSLGTLTRADIPDQVIADAVFSLTED-QVSDVVQGTFGPVLLRVTEITPEA 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +VK++I Q+ + +A+ + + Y + E+ A G ++ E + R + + VD Sbjct: 359 VTPLDQVKEEIRQQLALDEANRLLLDTYDQYEDARAGGDTLQEAAERLSLTVGTIDAVDR 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G G V +P LL F + + ++ + L +++ ++ E +PARDR+ Sbjct: 419 DGNKPDGTRVEDVPNLPALLAEAFQTEVGV-ENAPINLTGSGFLFYEVAEIVPARDREFS 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V +DW + + ++A L E K GK +I LG + + R + Sbjct: 478 EVRDRVLEDWTEAEVTSRLDARAKALQEEI-KNGKTLDEISTELGQEKMVKRGLKR-EAS 535 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQ 596 + G G++ VFS G + +F+VT + D + + Q Sbjct: 536 DADLGQTGVAAVFSVAKGETGTVANPAGDARFIFQVTEVFEPASATAESLPDDIKTAVNQ 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + DLLD ++ L++++ VTV+ +Q+ L Sbjct: 596 GLENDLLDQLVTRLQAEHGVTVNRTAMQQAL 626 >gi|254719202|ref|ZP_05181013.1| rotamase family protein [Brucella sp. 83/13] gi|265984198|ref|ZP_06096933.1| rotamase [Brucella sp. 83/13] gi|306837950|ref|ZP_07470808.1| rotamase family protein [Brucella sp. NF 2653] gi|264662790|gb|EEZ33051.1| rotamase [Brucella sp. 83/13] gi|306406874|gb|EFM63095.1| rotamase family protein [Brucella sp. NF 2653] Length = 628 Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 186/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++ ++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAISVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + I PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADTIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ GSFG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGSFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + VD Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDVLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|163843404|ref|YP_001627808.1| rotamase family protein [Brucella suis ATCC 23445] gi|163674127|gb|ABY38238.1| rotamase family protein [Brucella suis ATCC 23445] Length = 628 Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 185/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G + +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATTADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|17987128|ref|NP_539762.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1 str. 16M] gi|225852638|ref|YP_002732871.1| rotamase family protein [Brucella melitensis ATCC 23457] gi|256044795|ref|ZP_05447699.1| rotamase family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113701|ref|ZP_05454505.1| rotamase family protein [Brucella melitensis bv. 3 str. Ether] gi|256263869|ref|ZP_05466401.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2 str. 63/9] gi|260565602|ref|ZP_05836086.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1 str. 16M] gi|265991219|ref|ZP_06103776.1| rotamase [Brucella melitensis bv. 1 str. Rev.1] gi|265995055|ref|ZP_06107612.1| rotamase [Brucella melitensis bv. 3 str. Ether] gi|17982791|gb|AAL52026.1| peptidyl-prolyl cis-trans isomerase d [Brucella melitensis bv. 1 str. 16M] gi|225641003|gb|ACO00917.1| rotamase family protein [Brucella melitensis ATCC 23457] gi|260151670|gb|EEW86764.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1 str. 16M] gi|262766168|gb|EEZ11957.1| rotamase [Brucella melitensis bv. 3 str. Ether] gi|263002003|gb|EEZ14578.1| rotamase [Brucella melitensis bv. 1 str. Rev.1] gi|263094000|gb|EEZ17934.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2 str. 63/9] gi|326409157|gb|ADZ66222.1| rotamase family protein [Brucella melitensis M28] gi|326538867|gb|ADZ87082.1| rotamase family protein [Brucella melitensis M5-90] Length = 628 Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 184/630 (29%), Positives = 322/630 (51%), Gaps = 15/630 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +P+ RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPKTRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L + D+L ++ L+ QY V V+ +I Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVI 622 >gi|254706677|ref|ZP_05168505.1| rotamase family protein [Brucella pinnipedialis M163/99/10] gi|261314138|ref|ZP_05953335.1| rotamase [Brucella pinnipedialis M163/99/10] gi|261303164|gb|EEY06661.1| rotamase [Brucella pinnipedialis M163/99/10] Length = 628 Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 185/634 (29%), Positives = 322/634 (50%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + N + E K +G I LG T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNPRMEELKKRVEDGATLDTIASELGLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L + D+L ++ L+ QY V V+ +I L Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|254693848|ref|ZP_05155676.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 3 str. Tulya] gi|261214133|ref|ZP_05928414.1| rotamase [Brucella abortus bv. 3 str. Tulya] gi|260915740|gb|EEX82601.1| rotamase [Brucella abortus bv. 3 str. Tulya] Length = 628 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 184/630 (29%), Positives = 321/630 (50%), Gaps = 15/630 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L +G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALG-EGAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLLTTNQINRM 537 EV V WK EE + NQ + E K +G I L T I R Sbjct: 478 EVKDKVVAAWK----GEEAVKRLNQRMEELKKRVEDGATLDTIASELDLEKQTKRGITRT 533 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISY 593 N+ G +Q+F G +V + + ++FKVT + GP + Y Sbjct: 534 TNDAD-IGSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKY 592 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L + D+L ++ L+ QY V V+ +I Sbjct: 593 LATALADDMLQQLVGELQKQYPVKVNQAVI 622 >gi|260459244|ref|ZP_05807499.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum WSM2075] gi|259034798|gb|EEW36054.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum WSM2075] Length = 630 Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 183/625 (29%), Positives = 314/625 (50%), Gaps = 13/625 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59 ML +R A+ TWVAK L +L V F WG+S L +G +V++ G KV + + + Sbjct: 1 MLGTLRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVITAGGTKVSINEYRLA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++L ++SQ+ G + E+A+ +G+D +IL LVSGA LD+ +GL R+ Sbjct: 61 YDRQLAVMSQQFGQRLTHEQAKGLGIDNQILAQLVSGAVLDEQARKLGLGLSKDRLAELT 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F G +F F L G+ ++Y+ + ++ R +V G++ + Sbjct: 121 REDPAFKGPSGQFDRRTFEYMLHEVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E+R+VDY+ L V + PS++VL +FE K Y APEY++ SY+ + Sbjct: 181 KAVALYRGEDRTVDYLTLPKALVEPVEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L Sbjct: 241 VDIMDTTAVTDQQVSDDYNKNKARYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +GK+ +D LG+ +K+ I D ++AD+ F+L + +PV+ G+FG V+ V+ IKP Sbjct: 301 VAAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSPVVQGAFGPVLLRVTEIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 EV I + + +AS + + + E+ A G+S+ + + + K+ I + +D Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDITIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G G V +P +L+ VF +P +++ + D +++ ++ PARDR L Sbjct: 420 RSGLRPDGSIVKDLPESPELIKAVFDA-EPNTENDGLTTADNGFIFYEVGSVTPARDRTL 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V DW +T + +++KA++L K G I L T + R + Sbjct: 479 DEVRKKVVADWTAAETTKRLAAKADELEKRL-KAGATLDVIAGELKLEKQTKRGLRR-EA 536 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV------TNSKVGPVQEKDKFISY 593 ++ FG +G + +F P G ++FKV + V E + Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQ--KS 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618 T M+ DLLD ++A L++QY V V Sbjct: 595 FTSGMSDDLLDQLVAQLQTQYDVRV 619 >gi|13470813|ref|NP_102382.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti MAFF303099] gi|14021556|dbj|BAB48168.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti MAFF303099] Length = 630 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 181/625 (28%), Positives = 317/625 (50%), Gaps = 13/625 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59 ML I+R A+ TWVAK L +L V F WG+S L +G +V+ G KV + + + Sbjct: 1 MLGILRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVIIAGGTKVSINEYRLA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++L ++SQ+ G + E+A+++G+D ++L LVSGA LD+ +GL R+ Sbjct: 61 YDRQLAVMSQQFGQRLTHEQAKALGIDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F G +F F L + G+ ++Y+ + ++ R +V G++ + Sbjct: 121 REDPAFKGPGGEFDRRTFEYMLRQVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDAFF 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E+R+VDY++L + V I PS++VL +FE K Y APEY++ SY+ + Sbjct: 181 KAVALYRGEDRTVDYLLLPKKLVEPIEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + ++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L Sbjct: 241 VDIMDPTAVTEQQVSDDYNKNKTRYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFEKL 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +GK+ +D LG+ +K+ I D ++AD+ F+L + + V+ G+FG V+ V+ IKP Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 EV I + + +AS + + + E+ A G+S+ + + + K+ + + +D Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G G V +P L+ VF +P +++ + D +++ ++ PARDR L Sbjct: 420 RSGLRPDGSIVKDLPESPALIKAVFDA-EPKTENEALTTADNGFIFYEVASITPARDRTL 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V DW +T + +++KA++L + K G I +L T + R + Sbjct: 479 DEVRQKVVADWTAAETTKRLAAKASELD-KRLKAGATLDVIAGDLKLEKQTKRGLKR-EA 536 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV------TNSKVGPVQEKDKFISY 593 ++ FG +G + +F P G ++FKV + V E + Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQ--KS 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618 T M+ DLLD ++A L++QY V + Sbjct: 595 FTSGMSDDLLDQLVAQLQTQYDVRI 619 >gi|118589929|ref|ZP_01547333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata IAM 12614] gi|118437426|gb|EAV44063.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata IAM 12614] Length = 630 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 179/613 (29%), Positives = 312/613 (50%), Gaps = 8/613 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + TWVAK+F+ +L + F +WG+S L V G +T VG +V F ++ Sbjct: 1 MLDALRKGAGTWVAKLFIALLIMSFAVWGISGFLTGV-GQNTAAKVGDTEVSLFDFDRAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+LG ++Q+ G + ++G+ ++ L LV+ A ++ +++ L R+ I Sbjct: 60 RQDLGRLAQQFGRQLTPAEGAALGVPQQTLGKLVAEAAMNNTAQNMKLGVSDERLATIIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G ++ + L G E EY+ K+ R + G M+ L+ Sbjct: 120 SDPAFQGPGGRYDKNRLQQVLRASGYREDEYVVERRKVAERAQLAEGIAGSMKAPMTYLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E RS DY+++ + I DP+ VLT +FE+ K+++RAPE++ I Y+ Sbjct: 180 VLDTYQGETRSADYLMVTPEFIGEIEDPAEDVLTTYFEEKKEDFRAPEFREIKYVTLTPA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+D+ +AEYE+ E +F PE R + Q+ FP+Q+ A+EA Q L GK F +L Sbjct: 240 SLARPDDISDDDARAEYERRSEDFFQPERRKIRQMSFPSQQAAEEAAQELANGKTFDELM 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ + +D++LG +K D ++ D+ FS ++G + + G F VI +V I P Sbjct: 300 GERNLTDNDVTLGVMAKADFLDEAIGDAAFS-QEEGATSGAVEGRFSTVIVNVEEILPES 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV-D 419 T F++VK +I + +A ++ + +E+ A G +DE+ R + +++ P D Sbjct: 359 TKPFEDVKDEIVQSLAKEQAEREILDLLDEVEDARAGGALLDEVGERFSL-TVETPAAFD 417 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G GK AA+P E L+ F D + D + + ++W + + IP+R+R L Sbjct: 418 ASGNGEDGKP-AALPEAEGLVAGTFDSDIGIEND-VLQFGEQGFLWYDVVKVIPSRERTL 475 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV DV WK + A+ +S A L L ++ G F + G + + ++ R + Sbjct: 476 DEVRADVIAAWKKDELAKRLSDTAADL-LAKTEGGTPFIALSAETGLEVKSATELKR-NT 533 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599 FG D +S VFSGP+ +G VV KVT S V Q+ ++ L Q ++ Sbjct: 534 PAGDFGRDAVSAVFSGPIGTTAIAEANDGEGRVVLKVTGSNVPEFQKDAPQVAALGQQLS 593 Query: 600 KDLLDSVIAYLKS 612 + + D+++ S Sbjct: 594 QQIQDTLLGQFIS 606 >gi|90419613|ref|ZP_01227523.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas manganoxydans SI85-9A1] gi|90336550|gb|EAS50291.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas manganoxydans SI85-9A1] Length = 629 Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 175/630 (27%), Positives = 310/630 (49%), Gaps = 12/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R + W AKI L +L + F +WG+ D +F ++ V++ G +V + ++ Sbjct: 1 MLNTLRGSISGWTAKILLGLLVLSFAVWGIGD-VFRGGVANAVLTAGETEVSLQDYALAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++Q+IG +E A G+ + ++ LV+GA LD+ I L R+ IA Sbjct: 60 NRAQSRLAQQIGRRPTAEEAEMFGVGQSVISQLVAGAVLDEQGRRIDLGLSQDRLAQVIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F FS F + L I+E +YI R+ +V G+ + Sbjct: 120 EDPTFQDASGNFSRAQFQNALYNARISETDYIRGQENQAVRSQIVDAVSEGIAIPDAFST 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R+++Y+ L +P +ADPS+ VLT +F++ + Y APEY+ ++Y + Sbjct: 180 ALGLYNGERRTIEYVTLTPATIPPVADPSDEVLTTYFQENIETYAAPEYRSVAYAVLTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 I+++ + A+YE+ KE+Y + E R V+Q+ FP++ A L+ G F +A Sbjct: 240 AMADPTTITDEAVAADYEQYKERYTTAEQRRVQQIAFPDEAAAQAGKAKLEAGTSFADVA 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E G+S +DI LG ++ IPD ++A++ FSLA +GD + V+ G+FG V+ V+ I+P Sbjct: 300 SEAGRSPTDIDLGLVTRSQIPDATVAEAAFSLA-EGDVSDVVSGAFGPVLLQVTEIQPET 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + +EV +I + + + AS+ Y E+ A G + E ++ + +P VD Sbjct: 359 VQTLEEVSDEIRSALALVAASDTANSAYNAFEDARAGGATFAEGAQSAGLTVQTIPAVDR 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G G+ VA P ++ L VF + +P + + Y++ + PARDR L+ Sbjct: 419 EGNGPDGQPVAEQPSAQEFLPGVF-ETEPGLDNVPINFQSNGYVFYDVISIDPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DWK +T +++ +A Q+ E + G++ D GA T ++R Sbjct: 478 EVRDRVLADWKAAETDRQLAERAEQMKTEL-QAGRSMADAAAAAGAEARTAAAVSRQSGV 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI-----SYLT 595 ++ G G++ FSG V S +V +V +V P + + S +T Sbjct: 537 SE-LGQAGVNAAFSGGTGTVATAAGREAGSQIVLRVV--EVAPPADPAANVAANERSQMT 593 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 M+ D+L++ ++ L++ ++ VH I+R Sbjct: 594 GMLENDILETYVSLLQNDTAIAVHPAGIER 623 >gi|90423968|ref|YP_532338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] gi|90105982|gb|ABD88019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] Length = 662 Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 177/631 (28%), Positives = 299/631 (47%), Gaps = 15/631 (2%) Query: 1 MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IRKAS WV K ++ VL + F +WG++D +F G ST+ +G ++ F Sbjct: 30 MLRGIRKASSNWVGKTIMIIVMSVLILSFAVWGIAD-IFKGFGQSTLAKIGSTEISTEQF 88 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + L I ++ G + ++AR+ G+D+++L V+ A LD+ IGL Sbjct: 89 RQLYTERLQQIGRQFGRPLTQDQARAFGIDRQVLQQAVAEAALDEDARRIGLGQSDAETM 148 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ YI K+ R + G + P Sbjct: 149 RTIVSDPNFRGTNGGFDRARFAQAIRQFGYTEQRYIAEQRKVSLRRQIAGTLTAELEPPK 208 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LLD RF E RS+DY+ L+ H IA PS VL ++ +K +RAPEY++IS++ Sbjct: 209 TLLDALTRFQNEQRSIDYVKLDANHAGTIAPPSPEVLAAYYADHKTQFRAPEYRKISFVA 268 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +S+++ + YE ++K+ +PE R + Q+VFPN +EA A + G F Sbjct: 269 LTPEAVAKWTTVSDEDAKKVYEARRDKFSTPERRQITQIVFPNAEEAQAARAKITGGLSF 328 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+G S +D LG SK I D ++AD+ F+L D + I G FG + V I Sbjct: 329 DDLAKERGLSPADADLGLVSKAEILDPAVADAAFALPAN-DVSQPIPGRFGVTLLKVGKI 387 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P SF+ V + + I KA + + + ++E+ G S+ E +++ + ++ + Sbjct: 388 EPGSQQSFESVAPALKRDIAIDKARASIADLHNKMEDARGGGASVVEAAQKLGLAAVTIE 447 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D +G+ G AIP L F D + D+ G Y+W + P+R+ Sbjct: 448 ALDRSGRAPDGNPT-AIPQGLDLASAAFSSD--VGVDNDALAFGGGYVWFDVLGVTPSRE 504 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R LEEV V+ W+ + + + +A +V + GK D+ G T R Sbjct: 505 RSLEEVKPQVEARWRDEQISTRLRDQATDMVQKVEAGGK-LADVAAAAGLKTETATAFKR 563 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592 D + F + V P +G ++VF+VT+ V PV ++ K Sbjct: 564 -DGSVAGLPSSVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKD 622 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L + + +LL +A L+++ ++++ + Sbjct: 623 TLQRRLADELLAQYVARLETEIGTKINESAV 653 >gi|319783646|ref|YP_004143122.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169534|gb|ADV13072.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 630 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 179/623 (28%), Positives = 320/623 (51%), Gaps = 9/623 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59 ML I+R A+ TWVAK LV+L + FL+WG+S L ++G +V++ G KV + + + Sbjct: 1 MLGILRSAAGTWVAKGLLVLLVLSFLVWGVSGRLMGGLAGHDSVITAGGTKVSINEYRLA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++L ++SQ+ G ++ E+A+++G+D ++L LVSGA LD+ +GL R+ Sbjct: 61 YDRQLAVMSQQFGQRLSHEQAKALGVDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F G +F F L + G+ ++Y+ + ++ R +V G++ + Sbjct: 121 REDPAFKGPGGQFDRRTFEYMLQQIGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E+R++DY+ L V IA PS++VL+ +FE K Y APEY++ SY+ + Sbjct: 181 KAVALYRGEDRTIDYLTLPKALVEPIAAPSDSVLSAYFEANKKTYAAPEYRKFSYVRLEP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L Sbjct: 241 VDIMDPTAVTDQQVSDDYNKNKARYTTPELRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +GK+ +D LG+ +K+ I D ++AD+ F+L + + V+ G+FG V+ V+ IKP Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 EV I + + +AS + + ++ A G+S+ + + + K+ + + +D Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVRDNYDDTRAAGSSLADAAAKLKLKVVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G V +P +L+ VF +P +++ + D +++ ++ PARDR L Sbjct: 420 RSGLRPDASIVKDLPQSPELIKAVFDA-EPNTENDALTTADNGFVFYEVASITPARDRTL 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V DW +T++ +++KA++L K G I L T + R + Sbjct: 479 DEVRQKVVADWTAAETSKRLAAKADELEKRL-KAGATLDVIASELKLEKQTKRGVKR-EA 536 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLT 595 ++ FG +G + +F P G +++KV + D T Sbjct: 537 DDVDFGKEGAAAMFGVGEGGTGLIPSPTGDGQILYKVAEVFEPAGADASSVPDDAQKSFT 596 Query: 596 QMMNKDLLDSVIAYLKSQYSVTV 618 M+ DLLD ++A L++QY V V Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRV 619 >gi|239832027|ref|ZP_04680356.1| rotamase family protein [Ochrobactrum intermedium LMG 3301] gi|239824294|gb|EEQ95862.1| rotamase family protein [Ochrobactrum intermedium LMG 3301] Length = 628 Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 185/637 (29%), Positives = 320/637 (50%), Gaps = 21/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++WVAK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED--IGLEADH-GRVWG 117 +Q++ +SQ+ + E+A+++G++ ++L L +G LD+ + +GL D R+ G Sbjct: 61 EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E P FH F+ F + L + GI ++Y+D+ K+ R +V G++ + Sbjct: 121 E---DPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPDA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + E RSVDY+ + A+ PS+ L +FE KD Y+APEY++++Y+ Sbjct: 178 ALKALALYQGETRSVDYVTIQAEKADAVPAPSDDALKTYFEARKDEYKAPEYRKVTYVKL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + ++ DE+ YEKNK+++ + E R +EQL F + A+ A Q + G F+ Sbjct: 238 EPADIADPSAVTQDEISEYYEKNKDRFGTIEKRAIEQLNFADDAAAEAAQQKIAAGTSFV 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + +EQGK+ D+ LG+F K IPD ++AD+ F+LA+ G +PV+ GSFG VI V+ I+ Sbjct: 298 DIGKEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGSFGPVILRVTQIE 356 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P+ EV+ +I + A+ + + E+ + G SM +++++ + ++ + Sbjct: 357 PAHVKPLAEVEGEIRTTLANNIAASSISGIHDSYEQERSDGASMADVAKKLSLKTVTVEA 416 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 VD G D G V +P E LL F D D + + + Y+W Q+ PARDR Sbjct: 417 VDAGGNDPSGNPV-QLPNSEALLAAAFQADQGFDND-ALTMGNVGYLWYQVDGITPARDR 474 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQI 534 L+EV V WK EE + NQ V E K G I LG T + Sbjct: 475 TLDEVKDKVVAAWK----GEEAVKRLNQRVEELKKRLDGGATLDTIASELGVEKQTKRGV 530 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKF 590 R N+ G +Q+F G + + ++FKVT + GP ++ Sbjct: 531 VRTTNDAD-IGTAAAAQIFRGANGFTGSAAAPSDDAQILFKVTEVTEPAAAGPEAIPEQQ 589 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 Y ++ D+L+ ++ L+ QY V ++ +I L Sbjct: 590 QKYQATSLSDDILEQLVGELQKQYPVKINQTVINNAL 626 >gi|218461733|ref|ZP_03501824.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli Kim 5] Length = 432 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/438 (34%), Positives = 247/438 (56%), Gaps = 15/438 (3%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I + +YI +K+ R+ +V G L+D K + E+RSVDY++L N ++ I Sbjct: 1 IRQDDYIQERSKVAVRSQIVDAVSNGFTAPKTLVDAMKLYGGESRSVDYLLLTNANIEPI 60 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 P++ VL WFE K YRAPEY++I+Y+ + +++D+++ ++K K+ Y Sbjct: 61 KAPADDVLASWFEGVKQRYRAPEYRKIAYLKLQPADIADAATVTDDQVREAFDKGKDSYR 120 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 +PE RT+EQL F ++ A A +LK G F QL +QGK+ SD+ LG F+K+ +PD ++ Sbjct: 121 TPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAV 180 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 A++ F+++K G TPV+ GSFG VI ++NIK +F EVK++I Q+ ++ AS++V Sbjct: 181 AEAAFAVSKDGGTTPVVDGSFGPVILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVI 240 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF- 444 + ++E+ A G ++++I+ + K+ ++ + VD G D GKEV IP K+QLL F Sbjct: 241 NVHDQIEDLRAGGATLEDIASQLKLNAVTIDAVDATGADKDGKEVKDIPVKQQLLGEAFK 300 Query: 445 ---GKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 G D P LP G+ Y+W ++E P RDR + EV +DW + E+ Sbjct: 301 TEVGVDAP-------PLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKAEL 353 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 + KA++L + K G DI LG ++ + + I R ++ G G+ FSGP++ Sbjct: 354 AKKADELKAQAQK-GTALADIATPLGIAVESKSGITRS-TDDPVLGRAGVKAAFSGPLDT 411 Query: 560 VKCFPIENGLSYVVFKVT 577 V + + ++ KVT Sbjct: 412 VASAVGADPSTQILMKVT 429 >gi|153009380|ref|YP_001370595.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561268|gb|ABS14766.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188] Length = 628 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 188/637 (29%), Positives = 319/637 (50%), Gaps = 21/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++WVAK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED--IGLEADH-GRVWG 117 +Q++ +SQ+ + E+A+++G++ ++L L +G LD+ + +GL D R+ G Sbjct: 61 EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E P FH F+ F + L + GI ++Y+D+ K+ R +V G++ N Sbjct: 121 E---DPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPNT 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + E RSVDY+ + A+ PS L +F+ +KD Y+APEY++I+Y+ Sbjct: 178 ALKALALYQGETRSVDYVTIQAEKADAVPAPSEDALKTYFDAHKDEYKAPEYRKITYVKL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + ++ DE+ YEKNK+++ + E RT+EQL F + A+ A Q + G FI Sbjct: 238 EPTDIADPSAVTQDEINEYYEKNKDRFSTIEKRTIEQLNFADDAAAEAAQQKIAAGTSFI 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + +EQGK+ D+ LG+F K IPD ++AD+ F+LA+ G +PV+ G FG VI V+ I+ Sbjct: 298 DIGKEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGGFGPVILRVTQIE 356 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P+ EV+ +I + A+ + + E+ + G SM +++++ + S+ + Sbjct: 357 PAHVKPQAEVEGEIRTTLANNIAASSISGIHDSYEQDRSDGASMADVAKKLSLKSVIVEA 416 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 VD G D G V +P E LL F D D + + + Y+W Q+ PARDR Sbjct: 417 VDAEGNDPSGNPV-QLPNSEALLSAAFQADQGFDND-ALTMGNIGYLWYQVDGVTPARDR 474 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQI 534 L+EV V WK EE + NQ V E K G I G T I Sbjct: 475 TLDEVKDKVAAAWK----GEEAVKRLNQRVDELQKRLDGGATLDAIATEQGVEKQTKRGI 530 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKF 590 R N+ G +Q+F G + + ++FKV + GP ++ Sbjct: 531 VRTTNDAD-IGTAAAAQIFRGANGFTGSAAAPSDDAQILFKVVEVTEPAGAGPEAIPEQQ 589 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 YL ++ D+L+ ++ L+ QY V ++ +I L Sbjct: 590 QKYLATSLSDDVLEQLVGELQKQYPVKINQTVINNAL 626 >gi|158423833|ref|YP_001525125.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Azorhizobium caulinodans ORS 571] gi|158330722|dbj|BAF88207.1| PPIC-type PPIASE domain protein [Azorhizobium caulinodans ORS 571] Length = 638 Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 162/628 (25%), Positives = 311/628 (49%), Gaps = 6/628 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 +L+ +RK + +AK+FL+VL V F++WG+S +F+ + TV +G ++ ++ + Sbjct: 10 VLQNLRKGASGLIAKVFLLVLTVSFVLWGIS-GVFTNYSTGTVAEIGGTQISTDAYRQQY 68 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ I ++ G + ++AR+ G D+++L+ +++ ATLD+ +GL + I Sbjct: 69 LDQIQRIGRQAGRAITPDQARAFGFDRQVLNQMITEATLDEAARKLGLGMSDALIADSIR 128 Query: 121 RSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P F F L G+ E+ ++ K + R ++ +GG R +L Sbjct: 129 DNPALRPPGATAFDPAYFQQLLQANGLTEQRFLASERKRVLRQQLI-ESLGGARAPEVLK 187 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 F E R+V Y+ + + VPA A P++ L +++ +K +RAPEY++++ ++ Sbjct: 188 TAVHSFENEERAVSYLDVTSSSVPAPAAPTDEQLKAYYDGHKVVFRAPEYRKLTLLVLTP 247 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 I+IS+ + +A Y++N ++ +PE R V+Q+VFP++ +A A +K G F + Sbjct: 248 ATLAPWIQISDADAKAAYDRNAARFGTPEQRDVQQIVFPSEADAKAALDKIKGGTSFADI 307 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A+ +G S D +LG +K I D +AD+ F+L G PV G FGY + HV+ I P+ Sbjct: 308 AKARGLSDKDTNLGLVAKSAIIDPKVADAAFALPADGTSDPV-QGRFGYALVHVTTIVPA 366 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 F EV+ + + + +A ++ + + +E+ + G S+ E +++ + + VD Sbjct: 367 TVKPFAEVEAGLRRDLALERARRELLDKHDAIEDERSSGASLSETAQKLGLTPEVVDAVD 426 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G++ G EV IP + +L F + D +G Y+W + E P+R+R Sbjct: 427 RSGREPSGAEVTDIPDRVNVLSAAFSSRPGVDNDPIQLAQNGGYVWFDVNEVTPSRERPF 486 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V W + V +KA L+ E + GK+ D+ G + T + + R Sbjct: 487 DEVREQVASRWSEDEVVRAVEAKAKGLLTEL-EAGKSMADVASANGLEVKTASGLKRGRA 545 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599 E F + +++VF + +VF+VT + P + + L Q + Sbjct: 546 EGDFT-TEAVAKVFGVALNGYGVALGTANAEQLVFQVTKVESPPSANDIRIDNQLQQQVE 604 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+L + L+ Q +T++ +Q+ + Sbjct: 605 NDILQQYLTALQGQIGLTINQRAVQQAV 632 >gi|146341037|ref|YP_001206085.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] gi|146193843|emb|CAL77860.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] Length = 636 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 175/638 (27%), Positives = 308/638 (48%), Gaps = 15/638 (2%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K + V L V F IWG++D +F G ST +VGR ++ + F Sbjct: 1 MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L I ++IG + +++AR GLD+ +L ++ A LD+ IGL Sbjct: 60 RQIYTDRLQQIGRQIGRPLTTDQARMFGLDRSVLQQTIAEAALDEQARRIGLGQSDAETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ Y+ + R + G G+ PSN Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRQSLRRQITGTIAAGLEPSN 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LLD RF E RS+DY+ L+ I P+ VL +F+++K ++APEY++IS++L Sbjct: 180 TLLDALSRFQNEQRSIDYVKLDAAQAGTIETPAPEVLATYFDEHKAQFKAPEYRKISFVL 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 E K +S+++ + +++ K +PE R V+Q+ FP +EA A + G+ Sbjct: 240 VTPEEIGKWTTVSDEDARKVFDQRKALMGTPEKRQVQQMTFPTMEEAQAARARIASGEVT 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +LA+E+ + +D+ LG +K I D ++AD+ FSL G+ + + G+F + VS Sbjct: 300 FDELAKERNLNPADLDLGLVTKSAILDPAVADTAFSL-PTGEVSQPVKGAFNVALVKVSA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P +++ V DI ++ +A +V ++E+ G S+ E +++ + ++ + Sbjct: 359 IQPGQEPAYESVAADIKKEIAAERAKSEVATLRDKMEDERGGGASVAEAAKKLGLNAVTV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD +GK G+ V IP ++ + F D + D+ G Y+W ++ P R Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFASD--VGVDNEPISFRGGYVWFEVLGITPPR 476 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 +R L+EV V W+ + A+ + +A +LV + + EG D LG + T + Sbjct: 477 ERTLDEVKDQVAAKWRDDEIAKRLRDRATELVKKLN-EGGKLADEAAALGVKVETASAFK 535 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 R D I+ F + V + G ++VF+VT+ V + + L Sbjct: 536 R-DASLPGVPTGAITATFRTAKDGVGQTEADGGRQWIVFRVTDIVDPKVDLASEDVKKLK 594 Query: 596 QMMNKDLLD----SVIAYLKSQYSVTVHDNLIQRYLDG 629 + + L D S + L+ T+++ + + + G Sbjct: 595 DQLQRALADEQGTSYVLKLEKDIGTTINEAAVAQVVGG 632 >gi|148255838|ref|YP_001240423.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1] gi|146408011|gb|ABQ36517.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1] Length = 636 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 176/638 (27%), Positives = 307/638 (48%), Gaps = 15/638 (2%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K + V L V F IWG++D +F G ST +VGR ++ + F Sbjct: 1 MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L I +++G + E+AR GLD+ +L ++ A LD+ +GL Sbjct: 60 RQIYTDRLQQIGRQLGRPLTQEQARMFGLDRTVLQQTIAEAALDEDARRLGLGQSDAETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ Y+ ++ R + G G+ P N Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRVSLRRQITGTIAAGLEPPN 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +LD RF E RS+DY+ L+ I PS VL +F+++K ++APEY++IS++L Sbjct: 180 TMLDALSRFQNEQRSIDYLKLDAAQAGPIDAPSPEVLASYFDEHKAQFKAPEYRKISFVL 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 + K ++S+++ + +++ K + +PE R V+Q+ FP +EA A + G+ Sbjct: 240 VTPEDIGKWTDVSDEDARKLFDQRKAQMGTPEKRQVQQMTFPTMEEAQAARARIASGEVS 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +LA+E+ + +D+ LG +K I D ++AD FSL G+ + + G+F + VS Sbjct: 300 FDELAKERNLNPADLDLGLVTKTAILDPAVADMAFSL-PTGEVSQPVKGAFNVALVKVSA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P +++ V DI ++ +A +V ++E+ G S+ E +++ + +I + Sbjct: 359 IQPGQQPAYESVATDIKKEIAADRAKSQVANLRDKMEDERGGGASVAEAAKKLGLNAITV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD +GK G+ V IP ++ + F D + D+ G Y+W ++ P R Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFNSD--VGVDNEPISFRGGYVWYEVLGITPPR 476 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 DR L+EV V W+ + A ++ +KA LV + + EG D LG + T + Sbjct: 477 DRSLDEVKDQVAAKWRDDEVAAKLRAKATDLVKKLN-EGGKLADEAAMLGVKVETASAFK 535 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 R D I F + V E G ++VF+VT+ V + I L Sbjct: 536 R-DATVPGVPAGAIVAAFRTAKDGVGQTEAEGGRQWIVFRVTDITEPKVDLASEDIKKLK 594 Query: 596 QMMNKDLLD----SVIAYLKSQYSVTVHDNLIQRYLDG 629 + + L D + + L+ T+++ + + + G Sbjct: 595 DQLQRALADEQGTAYVMKLEKDIGTTINEAAVAQVVGG 632 >gi|27379919|ref|NP_771448.1| peptidyl-prolyl cis-trans isomerse [Bradyrhizobium japonicum USDA 110] gi|27353072|dbj|BAC50073.1| blr4808 [Bradyrhizobium japonicum USDA 110] Length = 632 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 162/582 (27%), Positives = 289/582 (49%), Gaps = 11/582 (1%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K + V L + F IWG++D +F G STV +GR ++ + F Sbjct: 1 MLRGMRKASSNWLGKTIMAVVMGVLIISFGIWGIAD-IFRGFGQSTVAKIGRTEISLNEF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L IS++ G + ++AR+ GLD+++L ++ A LD+ +GL ++ Sbjct: 60 RQIYTDRLQQISRQFGRPLTPDQARAFGLDRQVLQQTIAEAALDEEARRLGLGQSDDQIR 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G F + F + + G E+ Y+ K+ R + G G+ P Sbjct: 120 QVIMNDPNFKGVGGSFDANRFQAVIRNFGYTEQRYVSEQRKVSLRRQLTGTIGAGLEPPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++D RF E R++++ L+ I PS L +FE +K +RAPEY++I++++ Sbjct: 180 AMIDVLTRFQNEQRAIEFARLDAAQAGTIDAPSPEALAAYFEDHKVQFRAPEYRKIAFVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 E K E+S+++ + +++ K++ +PE R + Q+VFPN EA A + L G F Sbjct: 240 ISPEEIGKWSEVSDEDAKKLFDQRKDRLGTPEKRQIHQIVFPNAAEAQTARERLAGGMSF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 L +E+G S SD+ LG +K + D ++ D+ F+L G+ + I G G I V I Sbjct: 300 EDLGKERGLSASDVDLGLVTKSSL-DPAVGDAAFAL-PAGEISQPIQGRLGTAIVKVDKI 357 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P ++ + DI ++ +A KV + ++E+ G S+ + +++ + ++ + Sbjct: 358 EPGVEANYASLVGDIKREIATERARVKVADLRDKMEDERGGGASVIDAAQKLGLTAVTID 417 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ G+ VA IP ++ + F D + D+ G Y+W + P+RD Sbjct: 418 AVDRSGRAPNGQPVANIPPGLDVVSQAFNTD--VGVDNDAISFKGGYVWYDVLAITPSRD 475 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + A ++ +KA ++V + GK D +GA + T R Sbjct: 476 RNLDEVRDQVEARWRQDQIATKLKAKATEMVQKLEAGGK-LADEAAAVGAKVETATGFKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 D+ ++ F + V P+ G +VF+VT+ Sbjct: 535 -DDSPAGVPATVVAAAFRTAKDGVGQTPVSGGSEVIVFRVTD 575 >gi|154253607|ref|YP_001414431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum lavamentivorans DS-1] gi|154157557|gb|ABS64774.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum lavamentivorans DS-1] Length = 631 Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 171/631 (27%), Positives = 316/631 (50%), Gaps = 14/631 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ + WVAK+ + +L + F +WG++D +F+ G TV VG QK+ +++ Sbjct: 1 MLDSLRRNASGWVAKVLIGLLALSFAVWGIAD-IFTGFGGDTVAEVGDQKIDAATYQVEL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ SQ++G ++ ++AR G+D+ L L+S A LD D+GL V +I Sbjct: 60 RNEMNQFSQRLGQPLSLDQARQFGIDRAALSRLISLAALDGAASDLGLAVGDEAVGIDIT 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P G +F D+F L + GI+E+ +I+ + +SR V+ + G+ L++ Sbjct: 120 TDPNLQGPFGRFDRDLFRQSLQQNGISEERFIEQRRRAMSRKQVIEVIQVGVAAPEALIE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 RF E R Y++L V IADP + +++E + PE + S ++ + Sbjct: 180 MVSRFQEETRVAGYVILPQSLVGEIADPDEETVQKFYEAGASAFTLPETRDFSIMVLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + + + +S ++LQA YE+ + +Y PE R V Q+ F +++EA+EA L+ G+ + Sbjct: 240 DVTRTMAVSEEDLQAAYEQRRGEYDVPERRDVHQITFASEEEANEALTKLRGGENVETVV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + G ++ D+ LG S++ + LAD+ FSL G PV G G+ I HV+ I+P Sbjct: 300 KGLGLTMKDVDLGKVSRDDMLSPELADAAFSLEGTGYSEPV-RGPLGWSILHVTGIEPGK 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++++VK+++ + + A +++ + +E+ A G + ++++R + + + Sbjct: 359 PSTYEDVKEELRAAIELELARDQIYDIQNTIEDARAGGEPLADVAKRYNLTVRSIDGITA 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKESIPARDRK 478 GK G V +P LL V+ + D L G Y WV+I PA + Sbjct: 419 DGKTRNGDTV-ELPELPDLLNTVY---ENQQGDQIPPLDSGKDGYYWVEIDAVNPAELQP 474 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L+EV V WK K A+++ + A LV E G++F I G S+L+T + R Sbjct: 475 LDEVRDRVVSIWKQQKRADDLEALATSLV-ERGNAGESFEKIAAEYGRSVLSTPPLQRY- 532 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQM 597 +N F ++++F+ P P+ G S +V +V + + + DK+ T + Sbjct: 533 AQNDTFSRTAVTRLFAAPEGGFTFGPVGLGDSLIVMQVKDVRSPQLDANSDKYKETRTTL 592 Query: 598 MN---KDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ D+L + + + + V V++ L Q+ Sbjct: 593 VDAIQADMLQTFVVGYQQELGVEVNNTLFQQ 623 >gi|220925415|ref|YP_002500717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] gi|219950022|gb|ACL60414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] Length = 632 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 171/642 (26%), Positives = 328/642 (51%), Gaps = 23/642 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ R AS++W+ KI + V+F I+G+ D +F SGSSTV +VG K+ + Sbjct: 1 MLQGFRAASQSWLGKIVITVVFGLLIAGLAIFGIGD-IFRGSGSSTVATVGSTKISAEAV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++++ ++ +++++ + ++AR++GLD+++L LV+ ATLDQ D+GL V Sbjct: 60 RSAYQNQIQRLARQVRRPITPDQARALGLDREVLSALVTEATLDQKTRDLGLRVSDDTVI 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F +F L + G++E ++ + +R + + P Sbjct: 120 RLIKEEPAFKGANGAFDIALFNDTLRQAGLSEAAFVQEQRAVAARLQLAEAITADL-PVP 178 Query: 177 LLLDQA-KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +A R+ E R+ +I+L I P++ + ++++++ +RAPEY+ ++ + Sbjct: 179 LAVREAIHRYTAERRAAAFILLPESAAGEIPAPTDEEVKTYYDEHRSAFRAPEYRSVNLL 238 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + D K +++ E +A Y+ +K +Y +PE RT++Q+VFPN+ +A A ++ G+ Sbjct: 239 VLDPATLAKPDAVTDAEARARYDADKSRYGTPERRTIQQIVFPNEADAAAALARIRSGEA 298 Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +A E+G + LG+FS+ + D ++AD+ F L ++G + + G FG V+ V+ Sbjct: 299 PFESIAGERGLDPKSLDLGTFSRSELFDPAVADAAFGL-QQGVVSEPVKGRFGTVLLRVT 357 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I+P ++EV I ++ +A + +++ + +E+ A + EI+R ++ I Sbjct: 358 AIEPGSVKPYEEVAGQIRTEIARERAGDNLEKVHDAIEDQRAGAKPLAEIARERELPLIT 417 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGSYMWVQIKE 470 + VD G+D +GK V +P K+ +L +F G D + + G Y+W I + Sbjct: 418 VASVDAQGRDPQGKPVEGLPDKDAVLPALFRAEMGADSEALRTRS-----GGYVWYDIVK 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 PA DR L EV DV WK + +S+KA + K G+ + +LG T Sbjct: 473 VDPAHDRPLPEVRDDVVAQWKAEEVERRLSAKAREAAERLDK-GEAIEAVASSLGLEAKT 531 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ--EKD 588 + + R ++ + I ++F+ PV+ + + V FKVT++ V P+ + Sbjct: 532 ASDLARGRAKDGLT-PESIGRIFATPVDKTGSASAGDKV-RVAFKVTSATVPPLAAGSQG 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 + D+L IA + + V+++++ +R + GE Sbjct: 590 NVEQQFRSALADDILAQYIADARKEAGVSINESAFRRAIGGE 631 >gi|92117281|ref|YP_577010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis X14] gi|91800175|gb|ABE62550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis X14] Length = 635 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 167/627 (26%), Positives = 308/627 (49%), Gaps = 13/627 (2%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W+ KI + + L V F IWG++D +F G S + +VG ++ F Sbjct: 1 MLRGIRNASSNWLGKILMSIVMGLLIVAFGIWGIAD-IFHGFGQSNLATVGSTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L ++++ G ++ ++ R++GLD+++L +++ A LD+ GL A + Sbjct: 60 RQIYNDRLQQLARQFGRSLSPDQVRALGLDRQVLQQVIAEAALDEDARRKGLNASDDEIR 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +I P F G ++ F F + + G E+ Y+ R ++ G G+ PS Sbjct: 120 RQIMSDPNFKGANDAFDPARFAGLIRQMGYTEQRYVTEQRHTTLRREIAGTVAAGVEPSK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LL+ F E R++DY+ L I P+ L +F+ +K +RAPE+++I++++ Sbjct: 180 TLLEMLNHFQNEQRTIDYVKLGVPQAGTIDPPTPEQLASYFDAHKVQFRAPEFRKIAFVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +S+++ + YE+ K+K +PE R + Q+VFPN EA A + G F Sbjct: 240 MTPEGIAKTTAVSDEDAKKAYEQQKDKLSTPEKRQLWQIVFPNVTEAQAARSKIAGGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + SD+ LG SK I D ++A++ FSL K + + I G FG + V I Sbjct: 300 DDIAKERNLAASDVDLGIISKSEIIDPAVAEAAFSL-KADEVSQPIQGRFGVALVKVGKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P ++ V + + + + +A +V + + ++E+ G S+ E +++ + ++ + Sbjct: 359 EPGNQPTYDSVAAKLKHDIAVDRARAEVNDLHNKMEDERGGGASVLEAAKKLGLTAVTID 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ GK V IP + L+ + F D + + T+ + D ++W + P+RD Sbjct: 419 AVDRSGRTPDGKPVTGIPPQVDLIAQAFASDVGVD-NETLQVGDNGFVWFDVLGVTPSRD 477 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + + + +KA +V + + GK D LG + + + R Sbjct: 478 RTLDEVKDKVETGWRDEQISSRLMTKATDMVHKLDQGGK-LADEAAGLGLKVENASALKR 536 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592 D I+ VF P G +VVF+VT+ KV + E K Sbjct: 537 -DATAAGLPAAVIAAVFRTAKGGAGQAPGAGGEEWVVFRVTDVKVPSLDLASDEMKKLKD 595 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + + ++ + + IA L+++ TV+ Sbjct: 596 SIQRSLSDEDIGQYIARLETEIGTTVN 622 >gi|115524599|ref|YP_781510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] gi|115518546|gb|ABJ06530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] Length = 633 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 172/631 (27%), Positives = 299/631 (47%), Gaps = 15/631 (2%) Query: 1 MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IRKAS W+ KI L VL + F +WG+ D +F G ST ++G ++ F Sbjct: 1 MLRGIRKASSNWIGKIILSTVMGVLILSFAVWGIGD-IFKGFGRSTAATIGSTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + L I ++ G + ++AR+ G+D+++L V+ A LD+ GL Sbjct: 60 RQLYTERLQQIGRQFGKPLTPDQARAFGIDRQVLQQAVAEAALDEDARRKGLGQSDAETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G KF F L + G E+ YI ++ R + G G+ P Sbjct: 120 RTILSDPNFKGTAGKFDPARFGQVLRQFGYTEQRYIAEQRRVSLRRQIAGTLTAGLIPPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+D R+ E R++DY+ L+ H I PS L +F +K+ +RAPEY++ S++ Sbjct: 180 TLIDALGRYQNEQRTIDYVKLDAAHAGPIEPPSPEALAAYFADHKNQFRAPEYRKASFVA 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +S+++ + YE +EK+ +PE R V Q+VFP +A A + G F Sbjct: 240 LTPDAVAKWTTVSDEDAKKAYEDRREKFATPERRQVSQIVFPTSADAQAARSKIDGGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+G S +DI LG +K I D ++A + F+L PV +G FG +A V I Sbjct: 300 EDIAKERGLSATDIDLGLVAKAGILDPAVAAAAFALPANQVSQPV-NGRFGVALAKVGAI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P SF+ V D+ + I +A + + + ++E+ G S+ E +++ + ++ + Sbjct: 359 EPGSQQSFESVAADLKRDIAIERARASISDLHNKMEDDRGGGASVVEAAQKLGLAAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ G A IP +L+ +F D + D+ G Y+W + P+R+ Sbjct: 419 AVDRSGRTSDGT-AAPIPQGLELVPALFSSD--VGVDNDALAFGGGYVWFDVLGITPSRE 475 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + + S+A ++V + + G + D G + T R Sbjct: 476 RSLDEVKPQVEARWRDEQIGNRLRSQATEMVQQVNA-GTSLADAAAKAGLKVETAASFKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592 D + F + V P G ++V++VT+ V P+ E + Sbjct: 535 -DATVAGLPPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRD 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L + +N + L +A L++ T++++ + Sbjct: 594 NLERRLNDEQLAQYVAKLETDLGTTINESAV 624 >gi|75676027|ref|YP_318448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter winogradskyi Nb-255] gi|74420897|gb|ABA05096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter winogradskyi Nb-255] Length = 636 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 148/540 (27%), Positives = 275/540 (50%), Gaps = 8/540 (1%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W+ K + + L V F IWG++D +F G S + +VG ++ F Sbjct: 1 MLRGIRNASSNWLGKTLMTIVMGLLIVAFGIWGIAD-IFHGFGQSALATVGGTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L I ++ G + ++ R++GLD++IL +++ A LD+ + GL+ + Sbjct: 60 RQIYNDRLQQIGRQFGRPLPPDQVRALGLDRQILQQVIAEAALDEDAQRKGLKVSDEEIG 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +I P F G +N F F + + G E+ Y+ M R +VG G+ PS Sbjct: 120 RQIKSDPNFKGANNAFDAARFAGLIRQLGYTEQRYVAEQRNMALRRQIVGTMTAGVEPSK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LL+ RF E R++DY+ L I P+ L+ +F+ +K +RAPEY+++++++ Sbjct: 180 TLLEALNRFQNEQRTIDYVKLGAAQAGTIDPPTADQLSGYFDAHKVQFRAPEYRKVAFVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 E K +S+D+ + YE+ K+K +PE R + Q++FP+ +A A + + G F Sbjct: 240 LTPEEVAKWTAVSDDDARKIYEERKDKLSTPERRQLRQIMFPSVTDAQAAREKIAGGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A E+G + SDI LG+ SK I D ++A++ FS+ + + G FG + V I Sbjct: 300 DDIARERGLATSDIDLGTISKAEIIDPAIANAAFSI-NSDEVSQPTQGRFGVALIKVGRI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P +++ V + + + + +A ++ + ++E+ G S+ E +++ + ++ + Sbjct: 359 EPGNQPTYESVAEKLKRDVALDRARAEINNLHNKMEDERGGGASVVEAAKKVGLSAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 D +G+ GK V+ IP L+ + F D + D T+ L + ++W + P+RD Sbjct: 419 ATDRSGRAPDGKPVSGIPQGVDLIAQAFASDVGVDND-TLQLGNNGFIWFDVIGVTPSRD 477 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + + + +KA + + + GK D +LG + + + I R Sbjct: 478 RTLDEVKDKVEARWREDQISSRLMTKATDTIRKLEQGGK-LADEAASLGLKVESASAIKR 536 >gi|254469828|ref|ZP_05083233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp. JE062] gi|211961663|gb|EEA96858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp. JE062] Length = 628 Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 170/629 (27%), Positives = 303/629 (48%), Gaps = 24/629 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + +W AKI + +L + F +WG++D +F+ GS++V SVG +++ F ++ Sbjct: 1 MLDALRNSVGSWFAKILIGLLVLSFAVWGIAD-VFTGIGSTSVASVGDKEISAQDFQRAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +EL +S+++G V E+A + G+ ++L LV+ A LD + + + I Sbjct: 60 SRELDQLSRRVGQPVTQEQAAAFGVPAQVLGRLVAEAALDNEASKLRIGVSDEAIIKTIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G N + + L G++E E++ + R + +GG+ +L+ Sbjct: 120 ETPAFQGV-NGYDRNRLGQVLYNLGMSEDEFVMQQQLVAERQQLAEAVIGGIVVPETMLE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R+V+Y+VL + + P++ L +FE+ K NY+APEY+ + I Sbjct: 179 AFDKYAMEERTVEYLVLPKSSLTDVPAPTDEELNAFFEENKGNYKAPEYRSATIIELTSD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K ++++E+ EYE+ K +Y S E R + Q+ FP ++EA+ A + GK F L Sbjct: 239 KIAKPENVTDEEIAQEYERTKNRYQSQEQRRIYQISFPTKQEAEAAVVEMDSGKTFEDLM 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ + D+ LG +K D +AD+ F+L ++G + V+ G F I +KP+ Sbjct: 299 NERDLTEKDVDLGLMNKAGFLDQKIADAAFAL-QEGQASNVVEGQFTNAILFAKEVKPAA 357 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++VK ++ + A+++V++ + +E+ A G++ +EI+ R + I+ P D Sbjct: 358 VQPLEDVKDELRTVVAQANAADEVEDLFNEVEDARAGGSTFEEIAERFDLELINTPAFDA 417 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKESIPAR 475 +G + G E +P +L VF D DPL T ++W ++KE P+R Sbjct: 418 SGNNEAG-ETVELPIANELTTAVFSTDVGVENDPLEIGRT------GHLWYEVKEVTPSR 470 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 DR+L EV V DW +T E + KA L+ E + GK+ +I G + T+ Sbjct: 471 DRELSEVKEAVTADWTANRTGELLEEKAKTLIAEV-EAGKSLSEIAAAEGLTTTTSQPFT 529 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-----QEKDKF 590 R G I+ FSGP P N + V P + + Sbjct: 530 RNGGVQGLSG-SAITAAFSGPKGTAAQVPGNN--EDRILLVLTDTTAPAFMTESENAQRI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + LT + LL+ I L+ V V+ Sbjct: 587 NTQLTGALESSLLNQFINQLEQTEGVLVN 615 >gi|307942204|ref|ZP_07657555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp. TrichSKD4] gi|307774490|gb|EFO33700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp. TrichSKD4] Length = 635 Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 171/631 (27%), Positives = 305/631 (48%), Gaps = 10/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + TWVAKIF+ +L F +WG++D +FS G +TV VG ++ +F ++ Sbjct: 1 MLDALRKGAGTWVAKIFIALLVFSFAVWGVAD-VFSGFGQNTVAKVGETEIATVAFDRAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +++G +++ G+ ++ L +++ A L++ ++ L + G I Sbjct: 60 RQDLNRFGRQLGRPLSTTEGAQFGIPQQTLGRMIAEAALNETGRELNLGISDDHLAGIIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + + L G++E EY+ + R + G M L+ Sbjct: 120 NDPNFRRAGGGYDRALLAQVLRNIGMSEDEYVIQQREFAERQQIAQAVSGDMPAPTAYLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + IVL V I DP A L +FE+ K +RAPEY++++ + Sbjct: 180 VLNAYENETRDISLIVLTAEQVGEIEDPDQAALEAYFEENKVAFRAPEYRKVTLLELTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+D EYE++K +YF E R Q+VF + EA EA Q L G F +L Sbjct: 240 ALARPEDISDDMALDEYERDKSRYFEAEKRRARQIVFQDPAEAAEASQRLSDGTTFEELM 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ S +D++LG ++E D ++ ++ FSL+ G PV G F I +V I+P Sbjct: 300 AERNLSDNDVNLGLMAQEDFLDTAVGEAAFSLSVGGTSEPV-DGRFSTAIVNVLEIQPEA 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F +VK DI + +A +V + +E+ A G + E++ R ++ + D Sbjct: 359 TQPFDDVKADIKALLAAEQAEREVLDLLDEIEDARAGGDLLAEVAERLQLTTTMPDAFDH 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AGK + V ++P +L+ VF D + D V L + ++W ++ E IPAR+R L+ Sbjct: 419 AGKGLDENSV-SLPDAVELISGVFSSDVGVEND-PVQLGNRGFLWYEVSEVIPARERTLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + A+ + + A+ E K G+ + + + G ++ T + + R Sbjct: 477 EVTQKVIDAWKEAELAKRLENMADDYA-ERVKNGETMQALAETAGLTVQTNDGVKRTAT- 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQ 596 + +G++Q+F+GP +V + + VV KV + +++ I L Sbjct: 535 SLAVSRNGLTQLFAGPEGLVAAVEAADSAARVVAKVNKVNIPAFFAEEQGIQALGMQLAN 594 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 M LL ++ ++ + V ++D + L Sbjct: 595 QMQDSLLSQYVSGIEERAGVEINDGAVALVL 625 >gi|163868048|ref|YP_001609252.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP 105476] gi|161017699|emb|CAK01257.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP 105476] Length = 628 Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/609 (26%), Positives = 314/609 (51%), Gaps = 17/609 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML++IR A+ +W+ +IFL +L + F L+WG+ +++ G+ + + + Sbjct: 1 MLDVIRSAANSWIFRIFLAILLLCFILLWGIPQ--LHTKSERDLITSGKSIITIDDYRLA 58 Query: 60 WKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++Q +G + + + + + L LD+ + + + Sbjct: 59 LADQSARLAQAAHLGRMFTPNEMQQYQIPAFVFNQLQQNVLLDEQARKMKISLSKDTIAH 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F + F+ D+F + L I E ++++YTK R ++ + M+ NL Sbjct: 119 TIGSDKMFQ-INGTFNKDLFYNYLQHLRIGESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E RS DY++++ + IADP + L +WFE ++ +RAPEY+ +S + Sbjct: 178 FYKALALYQEEKRSADYLIIDLKE-QTIADPDHETLQKWFETHQSEFRAPEYRTVSLLSM 236 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++++ K +IS DE +A Y +N + +PE RT E+L FP ++EAD A + + G F Sbjct: 237 ELNDFVKPKDISTDEAKAYYTQNTSHFVTPEKRTFEELRFPTREEADNAAKKIADGLSFD 296 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +L + + K+L+DI G ++ +P+ LA IF L ++G +PVI+ G V+ V++I+ Sbjct: 297 ELVKAEKKTLNDIKKGPLAENELPN-HLASEIFEL-QQGQVSPVINDLQGPVLIRVTHIE 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS ++ F+ V++ I + +A++ ++ +Y +E G S+ E++ + K+ S+ Sbjct: 355 PSSSLPFESVEESIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKL-SLRTIT 413 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK ++G+ + +P K+ LL ++ ++ + D ++ +G Y+W ++ + IPARD+ Sbjct: 414 LDKTGKTLEGETLTDLPQKDALLDAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 472 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 LEE DV WK+ +T + KA Q L+ EGK+ D+ + LG + TT + R Sbjct: 473 TLEEAELDVLSQWKSEETQRLLDEKA-QNALKQFMEGKSLVDLARTLGVTKQTTPPLRRQ 531 Query: 538 DNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSK-VGPVQEKDKFISY 593 D + G +G+ +FSGP ++K N + Y + VT K + P + + Sbjct: 532 D-PFEILGVEGVKALFSGPKGHYGIIKGPVATNRIIYQINSVTMPKDITPHTLSPEVRTN 590 Query: 594 LTQMMNKDL 602 + M+ +DL Sbjct: 591 IDMMIREDL 599 >gi|49475360|ref|YP_033401.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae str. Houston-1] gi|49238166|emb|CAF27375.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae str. Houston-1] Length = 629 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 173/619 (27%), Positives = 309/619 (49%), Gaps = 36/619 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--- 56 ML+IIR A+ +W+A+IFL +L + F L+WG+ ++S G + + Sbjct: 1 MLDIIRNATNSWIARIFLAILLLCFILLWGIPQ--LHTKSERDLISSGESIITIDDYRLA 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L + S ++G + + + + + L D+ + + + Sbjct: 59 LADQSARLALAS-RLGRMFTPNEMQQYQIPAFVFNQLQQDVLFDEQTRQMKINLSKDAIA 117 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +I +F + F HD+F + L + I+E ++D+YTK R ++ + GM+ + Sbjct: 118 RKIGADNMFQ-INGVFKHDLFRNYLQQLHISESNFLDYYTKKEKRNQLISASLSGMKAPD 176 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + E R DY+VL+ + I++P L +WFE +++ +R PEY+ IS++ Sbjct: 177 LFYKALAFYQRETRIADYLVLDLKEKEIISEPHQETLQKWFETHRNKFRVPEYRTISFLS 236 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 ++ + K +IS DE++ Y +N ++ +PE RT+E+L FP ++ AD A + + G F Sbjct: 237 MELADFIKPKDISEDEVKNYYTQNSSRFITPEKRTIEELRFPTREAADNAVKKIADGLSF 296 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 L + + K+L+DI G F++ +P L+ IF L K+G + VI+ G VI V++I Sbjct: 297 DDLVKAENKTLNDIKKGPFTENELPSY-LSSEIFEL-KQGQISAVINDLQGPVIIRVTDI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 P+ + F++V+ +I + +A++ ++ Y +E G S E++ + K LP Sbjct: 355 TPAGPIPFEKVEDNIRQTLAQNRAADDIRNSYTEIENARFEGASFKELADQYK-----LP 409 Query: 417 L----VDFAGKDVKGKEVAAIPYKEQLLFRVF----GKD-DPLSKDHTVALPDGSYMWVQ 467 L +D GK ++G + +P K+ LL ++ G D DPLS LP+G Y+W + Sbjct: 410 LRTITLDKTGKTIEGTILTDLPQKDLLLNSIYQSNEGADLDPLS------LPNGGYLWYK 463 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I IPARD+ EE +V WK + + KA L+ EGK+ + LG + Sbjct: 464 INTIIPARDKTFEEAKQEVIAQWKKEEIQRLLDEKAKD-ALKQLTEGKSLVSLAHILGVT 522 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSK-VGP 583 TT + R D+ ++ G++G+ +FSGP +VK +N + Y + +VT K + P Sbjct: 523 KQTTQPLRRQDS-SEILGFEGVKALFSGPKGHYGIVKGPIAKNRILYQIKEVTTPKDISP 581 Query: 584 VQEKDKFISYLTQMMNKDL 602 S + M+ +DL Sbjct: 582 HTLSSDIRSNIDMMIREDL 600 >gi|319405521|emb|CBI79140.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. AR 15-3] Length = 629 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 166/592 (28%), Positives = 295/592 (49%), Gaps = 32/592 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE IR A +WVAKIFL L + F+ +WG+ + +++ G+ + ++ Sbjct: 1 MLETIRNAVNSWVAKIFLTTLLLCFIFLWGVPQ--LHIMNEKELLTSGKSTITIDNY--- 55 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIEDIGLEAD 111 L + Q + + S R D+ +L+ L D+ + + Sbjct: 56 ---RLALADQSLRLAITSHLGRMFTPDEIQRYKIPVFVLNQLQQDVLFDEQARKMKINLS 112 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 + I+ +F ++ F+ D+F++ L R NE+ ++++YTK R ++ + G Sbjct: 113 KDMLARIISNDNIFQ-RNRAFNRDLFLNYLQRLHTNERNFLNYYTKKEKRKQLILASLSG 171 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 M+ N+ ++ E R DY+V++ + +ADP+ +L +WF +K +RAPEY+ Sbjct: 172 MKAPNIFYKALATYHEEKRIADYLVIDLKKEEKVADPNQEILEKWFNTHKKKFRAPEYRT 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +S + E K ++S +E+Q Y +N ++ PE RT+E+L F ++ AD A + + Sbjct: 232 VSLLSITSEEFLKPQDVSVNEIQTYYTQNASRFIIPEKRTIEELRFSTREAADNAAKKIA 291 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 +G F L +E+ K LSDI+ G ++ +P+ LA IF L KKG + VI+ G VI Sbjct: 292 EGLSFDALVKEEKKKLSDITKGPLAENELPN-HLASEIFEL-KKGQISAVINDLQGPVII 349 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V++I PS + Q+V+K+I + A+ V+ Y +E G S+ E++++ K Sbjct: 350 RVAHITPSTQIPLQKVEKEIRQILAKNYATTHVRNKYTEIENARFEGASLAELAKQYK-- 407 Query: 412 SIDLPL----VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 LPL +D GK +G + +P K+ LL ++ + + D ++LP+G Y+W Q Sbjct: 408 ---LPLRKITIDKTGKTTEGISLTDLPQKDILLNAIYQSRENIDMD-PLSLPEGGYLWYQ 463 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + IPARDR L E +V W+ + + KA Q +L+ GK+ + LG Sbjct: 464 VDTIIPARDRTLSEAKQNVIIQWREEEIQRLLDEKA-QDILKQLANGKSLDALATELGII 522 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 TT + R D+ ++ FG +G+ +F P + N + +++K+T S Sbjct: 523 KQTTPALRRQDS-SQIFGVEGVKALFYDPQDHYGVVKGVNAENRIIYKITTS 573 >gi|85716537|ref|ZP_01047508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp. Nb-311A] gi|85696726|gb|EAQ34613.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp. Nb-311A] Length = 582 Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 155/569 (27%), Positives = 284/569 (49%), Gaps = 5/569 (0%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 I + +L V F IWG++D +F G S + +VG ++ F + L I ++ G + Sbjct: 3 IVMGLLIVAFGIWGIAD-IFQGFGQSALATVGNTEISTEQFRQIYTDRLQQIGRQFGRTL 61 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 ++ R++G+D++IL +++ A LD+ GLE + +I P F G + F Sbjct: 62 PPDQVRALGIDRQILQQVIAEAALDEDARRKGLEVSDKEISRQIMSDPNFKGANGAFDPA 121 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F + + G E+ Y+ + R +VG G+ PS LL+ RF E R++DY+ Sbjct: 122 RFAGLIRQLGYTEQRYVTEQRNLALRRQIVGTVTAGVEPSTKLLEALNRFQNEQRTIDYV 181 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 L +I P+ A L+ +F+ +K +RAPEY++I++++ E K +S+D+ + Sbjct: 182 KLGAAQAGSIDPPTEAQLSGYFDAHKVQFRAPEYRKIAFVVLTPEEVAKWTTVSDDDAKK 241 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 YE+ K+K +PE R + Q++FP+ +A A + + G F +A+E+ + SDI LG+ Sbjct: 242 VYEQRKDKLSTPERRKIWQIIFPSVADAQAAREKIASGASFDDIAKERNLATSDIDLGTI 301 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S+ I D ++A++ FSL K D + I G FG + VS I+P ++ V + + + Sbjct: 302 SRPEIVDPAVAEAAFSL-KTDDVSQPIQGKFGVALVKVSKIEPGNQPTYDSVATKLKHDI 360 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + + +V + ++E+ G S+ E +++ + ++ + D +G+ GK V IP Sbjct: 361 AVDRGRAEVNNLHNKMEDERGGGASVVEAAKKVGLSAVTIEATDRSGRAPDGKPVTEIPQ 420 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 L+ + F D + D T+ L + ++W + P+RDR L EV V+ W+ + Sbjct: 421 GVDLIAQAFASDVGVDND-TLQLGNNGFVWFDVLGVTPSRDRTLAEVKDKVEAGWRKDQI 479 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 + + +KA +V + GK + +LG + + + I R D ++ VF Sbjct: 480 SGRLMTKATDIVRNLEQGGK-IAEESSSLGLKVESASAIKR-DATTGELPAAVVAAVFRV 537 Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 P + + VF+VT+ KV P+ Sbjct: 538 VKGAAGQAPGADNDEWFVFRVTDVKVPPL 566 >gi|86749913|ref|YP_486409.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris HaA2] gi|86572941|gb|ABD07498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris HaA2] Length = 633 Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 162/633 (25%), Positives = 307/633 (48%), Gaps = 19/633 (3%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS WV K I + VL + F +WG++D +F G ST+ ++G ++ F Sbjct: 1 MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIAD-IFRGFGRSTLATIGGTEITTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I ++ G + ++AR+ G+D+++L +++ A LD+ +GL Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G F + F + + G E+ YI K+ R + G G+ PS+ Sbjct: 120 KSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSS 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L A +F E R+++Y+ L + V I PS L ++E +K +RAPEY++++++ Sbjct: 180 TMLQVASQFQNEQRAIEYLKLTDAQVGTIDPPSPEALAAYYEDHKTQFRAPEYRKLAFVT 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K ++S+ + + +++ K+K +PE R V Q+VFP+ +EA A + +G F Sbjct: 240 VTPDSIAKWTDVSDADARKLFDQRKDKLSTPEKRQVSQIVFPSGEEAQAARTKIAEGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A ++G +D+ LG SK + D ++A++ F+L P I G+FG + VS + Sbjct: 300 DDIATQRGLKPADVELGMVSKAEMLDPAVANAAFALPLNEVSQP-IQGAFGTALVRVSKV 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P S++ + I + + +A +V+E + ++E+ A G ++ E ++ + ++ + Sbjct: 359 EPGVQPSYESLASTIKRDVSLERARAQVQELHDKMEDARAGGANVIEAAKTLGLNAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D +G+ G+ V IP +L F D + + ++ +G Y+W + P+R+ Sbjct: 419 AIDRSGRGPDGQPVKDIPQGLELATAAFNSDVGVDTE-SINYQNG-YVWFDVLGVTPSRE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+T + + + A ++V + GK ++ G + T + R Sbjct: 477 RSLDEVKDQVEARWRTEQVTSRLRTMAAEMVQKLGTAGK-LAEVAPQ-GVKVETATGLKR 534 Query: 537 MDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKF 590 E G + VF + G + V++VT+ + PV E K Sbjct: 535 ---EGASAGVPDTVVEAVFRTQKDAFGQSQGGTGNEWFVYRVTDVTIPPVDLASAETKKL 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L Q MN + + IA+++ Q ++ + Sbjct: 592 KDALVQRMNDEQVGEYIAWVEKQIGTKINQQAV 624 >gi|319407091|emb|CBI80728.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. 1-1C] Length = 629 Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 166/590 (28%), Positives = 299/590 (50%), Gaps = 28/590 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R + +WVAKIFL L + F L+WG+ + + +++ G+ + ++ Sbjct: 1 MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTY--- 55 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 L + Q + + S R D+ I + L+Q +D+ + ++ + Sbjct: 56 ---HLALADQSLRLALTSHLGRMFTPDE-IQKYKIPFFVLNQLQQDVLFDEQARKMKINL 111 Query: 120 ARSPLFH--GKDNKFSH------DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 ++ + G D+ F H D+F++ L + NE ++ +YTK R ++ + G Sbjct: 112 SKDMIARIIGNDDIFQHNRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAG 171 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 MR ++ ++ E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ Sbjct: 172 MRAPDIFYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRT 231 Query: 232 ISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 +S LF + +E K IS +E+Q Y +N ++ +PE R +E+L F ++ AD A + Sbjct: 232 VS--LFSITSEEFLKPQNISVNEIQTYYTQNASRFITPEKRIIEELRFSTREAADNAAKK 289 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + +G F L +E+ K+LSDI+ G + +P+ LA IF L KKG+ + VI+ G V Sbjct: 290 IAEGLNFDALVKEEKKNLSDITRGPLEENELPN-HLASEIFEL-KKGEISAVINDLQGPV 347 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I V++I PS + Q+V+ DI + A ++ Y +E G S+ E++++ K Sbjct: 348 IIRVAHITPSTQIPLQKVENDIRQTLAKNYAVTHLRNKYTEIENARFEGASLKELAKQYK 407 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + +D GK +G + +P KE LL ++ + + D ++LP+G Y+W Q+ Sbjct: 408 LPHRKIT-IDKTGKTTEGITLTDLPEKEVLLNAIYQSREGIDMD-PLSLPEGGYLWYQVD 465 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 IPARDR L EV + WK + + KA ++ + +K GK+ + LG Sbjct: 466 TIIPARDRTLSEVKQNAIFQWKEEEIQRLLDEKAQNILKQLAK-GKSLDALATELGIIKQ 524 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 TT + R N ++ FG +G+ +F G + N + +V+K+T S Sbjct: 525 TTPALQR-QNRSQIFGVEGVKALFYGTKDHYGVVKSVNAANRIVYKITAS 573 >gi|323138293|ref|ZP_08073365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp. ATCC 49242] gi|322396545|gb|EFX99074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp. ATCC 49242] Length = 635 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 182/643 (28%), Positives = 320/643 (49%), Gaps = 22/643 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 MLE +R AS+ W+ + + V+ V F IWG+ D +F +S +V VG +V SF Sbjct: 1 MLEGLRVASQNWIGRTIMAVVMGVIVVSFAIWGVGD-VFRGMTTSRLVKVGSGEVSVDSF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N+++ EL I Q++ V ++ AR GLD ++L+ L++ LDQ +GL + Sbjct: 60 RNAYQNELRRIQQRLRRAVTNQEARQAGLDLQVLERLITEVALDQKARQLGLASSDETTQ 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 +A+ + G D KF + F ++AR+ G E+ ++ R + + G+ P Sbjct: 120 QLLAKEKVLQGPDGKFDVERF-KQIARDAGFTERGFVADQKSAYLRKLLTDLVTNGVEPP 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+++ RF E+R++DY VL + PS+ L ++F++ + +RA EY++++ + Sbjct: 179 RLMIEAIHRFRNESRTIDYFVLPVSAAGPASTPSDEELKKYFDEREQTFRAKEYRKLTAL 238 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + K E++ DE++ YE++K + F +PE R V Q+V KEA++A LK G Sbjct: 239 VVSPTSVGKPGEVTEDEVRKLYEESKARRFGTPEKRDVRQIVLKTDKEAEDALARLKGGM 298 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA E + D++LG + D + ++F+LAK G PV +FG VI+ V Sbjct: 299 DIDALAAELKLNPKDVNLGLVEQRDFGDAKVGAAVFALAKPGLAEPV-KTAFGTVISQVK 357 Query: 355 NIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I P+ +T +F++ ++ ++ KA +V+ + +E+ A G ++ E + K V + Sbjct: 358 SIAPAVYTKTFEQAAPELRVEIAAQKAGPEVRRLHDAIEDQRAAGKTLAETA---KGVGL 414 Query: 414 DLPL---VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 D+ + VD AG D GK +A +P LL F D + D TVA DG Y+W ++ Sbjct: 415 DVRVIEAVDDAGHDKDGKAIADLPAGPDLLKAAFASDVGVDND-TVATRDGGYVWFEVNA 473 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 PAR + EEV V + + + ++ KA++LV + + G+ D+ K++ A + Sbjct: 474 VEPARQKTFEEVKGAVLEAMRNEAAQKALAEKADELVGKL-RSGQPIEDVAKSVNAEVKR 532 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-LSYVVFKVTNSKVGPVQEKDK 589 + R + F I Q F P P + G L + V T P+ + K Sbjct: 533 ATDVKRAARPD--FNNPTIVQFFDVPPRGAGSLPGDAGRLVFFVKDSTAPAFDPLSIESK 590 Query: 590 FIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 I+ L ++ DLL+ + L+ +V ++ ++ EK Sbjct: 591 TIAEQLRPALHNDLLEQFVGGLEKALNVEINQKALEAATGTEK 633 >gi|240850253|ref|YP_002971646.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup] gi|240267376|gb|ACS50964.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup] Length = 629 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 156/569 (27%), Positives = 297/569 (52%), Gaps = 32/569 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGL------SDALFSVSGSSTVVSVGRQKVPF 53 ML+IIR A+ +W+ +IFL +L + F L+WG+ S+ SG STV Sbjct: 1 MLDIIRNATNSWIFRIFLAILLLCFILLWGVPQLHKKSERDLITSGKSTVT--------- 51 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKK------ILDNLVSGATLDQFIEDIG 107 ++ ++ L S ++ + + R + ++ + + L LD+ + + Sbjct: 52 ---VDDYRLALADQSARLAYAAHLGRMFTANEMQQYQIPAFVFNQLQQNLLLDEQVRKMK 108 Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 + + I +F + F ++F + L I+E ++++YTK R ++ Sbjct: 109 ISLSKDTIAHTIGSDKMFQV-NGTFDKNLFYNYLQHLRISESAFLNYYTKQEKRNQLIAA 167 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + M+ NL + E R DY+V++ + IADP + L +WF+ ++ +RAP Sbjct: 168 LLSDMKAPNLFYKALALYQGEMRIADYLVIDLKEKETIADPDDEKLQKWFKTHQSQFRAP 227 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 EY+ +S + ++++ K +IS DE +A Y +N ++ +PE RT E+L FP+++EAD A Sbjct: 228 EYRTVSLLSMELNDFVKPKDISTDEAKAYYTQNASRFVTPEKRTFEELQFPSREEADNAA 287 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + + G F +L + + K+L+DI G ++ +P LA IF L ++G + VI+ G Sbjct: 288 KKIADGLSFDELVKAENKTLNDIKKGPLAENELPS-HLASGIFEL-QQGQVSTVINDLQG 345 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 +I V++I+PS ++ F++V+++I + +A++ ++ +Y +E G S+ E++ + Sbjct: 346 PIIIRVTHIEPSSSLPFEKVEENIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQ 405 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K+ S+ +D GK ++G + +P K+ LL ++ ++ + D ++ +G Y+W + Sbjct: 406 YKL-SLRTITIDKTGKTLEGAILTDLPQKDILLNAIYQSNEGVDLD-PLSFQNGGYLWYK 463 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + IPARD+ LEE DV WK+ + + KA Q L+ EGK+ + + LG + Sbjct: 464 VDKIIPARDKTLEEAKLDVLSQWKSEEIQRLLDEKA-QNALKQLTEGKSLVALARTLGVT 522 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP 556 TT + R D+ + G +GI +FS P Sbjct: 523 KQTTPALRRQDSSDP-LGVEGIKALFSAP 550 >gi|316933952|ref|YP_004108934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris DX-1] gi|315601666|gb|ADU44201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris DX-1] Length = 633 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 161/629 (25%), Positives = 298/629 (47%), Gaps = 19/629 (3%) Query: 1 MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W K ++ +L V F IWG++D +F G +T+ +G ++ F Sbjct: 1 MLRGIRNASSNWFGKTIMIAVMGLLIVSFGIWGIAD-VFRGFGRATLAKIGGTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I +++G + ++AR++G+D+++L ++ A LD+ +GL Sbjct: 60 RQTYNDRLQQIGRQLGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + +F F + + G E+ Y+ ++ R + G G+ P Sbjct: 120 KSILEDPNFKGANGQFDAGRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGTITAGLEPPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LL +F E R++DY+ L + I PS A L +++ +K +RAPEY++IS+++ Sbjct: 180 TLLQALSQFQNEERAIDYLKLTDAQAGTIEAPSPADLAAFYDSHKAQFRAPEYRKISFLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K E+S+ + + +++ K++ +PE R + Q+VFPN +EA A + G F Sbjct: 240 VTPESIGKWTEVSDADARKLFDQRKDRLSTPEKRQILQIVFPNAEEAQAARAKIASGTSF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+G +D+ LG S+ + D +A + F+L PV G FG V+ V+ I Sbjct: 300 ADLAQERGVKSADLDLGLVSQSEMLDPKVAAAAFALPLNEVSQPV-QGQFGTVLLEVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P + V ++ ++ +A ++V+E + ++E+ G+S+ E + + + ++ + Sbjct: 359 EPGKQPDYASVAANLKRELAQERARKQVQELHDKIEDARGGGSSVSEAASQLGLAAVTVE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D +G+ G V IP +L F +P + ++ +G Y+W I P+R+ Sbjct: 419 AIDRSGRGPDGAPVTTIPQGLELATAAF-NSEPGVDNDAISYQNG-YVWYDIVGVTPSRE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + E + A +LV + GK D+ G ++ + I R Sbjct: 477 RALDEVKDKVEAGWRAEQITERLRKLAVELVQKLDGGGK-LADVAP-AGVAVQSATGIKR 534 Query: 537 MDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590 E G G + VF + +G + VF+VT V + + Sbjct: 535 ---EGADAGLPGTVVDAVFRTAKDAAGQVQGSSGTEWYVFRVTGDTVTTADVNAPQMQQL 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 L Q + + + IA+L+ V+ Sbjct: 592 KDNLVQRLRDEEVGQYIAWLEKDIGTKVN 620 >gi|254564031|ref|YP_003071126.1| peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens DM4] gi|254271309|emb|CAX27321.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens DM4] Length = 634 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 311/645 (48%), Gaps = 27/645 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54 ML+ IR AS+ W+ K+ L V+F FLI G+ A+F V GSST V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL Sbjct: 58 EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F + F +F L R G+NE ++ +++R + V M Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPV 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + R+ E R + L I P++ L ++E K ++RAPEY+ ++ Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNL 237 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ D K E+S+DE + YE N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYEANPGRFGKAERRTIQQISFPDEATAAEARAKIESGE 297 Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V Sbjct: 298 TPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409 + I+P F EVK +I ++ + + +KV++ +E+ A + EI++ + Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + +P VD G D G+ VA IP KE L F + D + + G +W + Sbjct: 414 LTLVSIPAVDAQGNDPSGQPVAGIPDKETTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + P+ ++ L EV +V K W + + + +K+ +L K G+ + + G L Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLK 531 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586 T +I R ++ + + ++F+ PV P G + VFKVT + + P Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588 Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 D + ++ L + D+L IA ++ V V+ ++R GE Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|319404079|emb|CBI77667.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella rochalimae ATCC BAA-1498] Length = 629 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 165/592 (27%), Positives = 295/592 (49%), Gaps = 28/592 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R + +WVAKIFL L + F L+WG+ + + +++ G+ + ++ Sbjct: 1 MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTY--- 55 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIEDIGLEAD 111 L + Q + + S R D+ +L+ L D+ + + Sbjct: 56 ---HLALADQSLRLALTSNLRRMFTPDEIQRYKIPFFVLNQLQQDVLFDEQARKMKINLS 112 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 + I +F + F+ D+F++ L + NE ++ +YTK R ++ + G Sbjct: 113 KDMIARIIGNDDIFQ-YNRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAG 171 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 MR ++ ++ E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ Sbjct: 172 MRAPDIFYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRT 231 Query: 232 ISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 +S LF + +E K IS +E+Q Y +N ++ +PE R +E+L F ++ AD A + Sbjct: 232 VS--LFSITSEEFLKPQNISVNEIQTYYTQNTSRFITPEKRIIEELRFSTREAADNAAKK 289 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + +G F L +E+ K+LSDI+ G ++ +P+ LA IF L KKG+ + VI+ G V Sbjct: 290 IAEGLSFDALVKEEKKNLSDITRGPLAENELPN-HLASEIFEL-KKGEISAVINDLQGPV 347 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I V +I PS + Q+V+ DI + A ++ Y +E G S+ E++++ K Sbjct: 348 IIRVVHITPSTQIPLQKVENDIRQTLAQNYAVTHLRNKYTEIENARFKGASLTELAKQYK 407 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + +D GK +G + +P KE LL ++ + + D ++LP+G Y+W Q+ Sbjct: 408 LPHRKIT-IDKTGKTTEGIILTDLPQKEVLLNAIYQSHEGIDVD-PLSLPEGGYLWYQVD 465 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 IPARDR L EV + WK + + KA ++ + +K GK+ + LG Sbjct: 466 TIIPARDRTLSEVKQNAIVQWKEEEIQRLLDEKAQDILKKLAK-GKSLDALATELGIIKQ 524 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 TT + R D ++ FG +G+ +F G + N + +V+K+T S V Sbjct: 525 TTPALRRQD-PSQIFGVEGVKALFYGTKDHYGVVKGVNATNRIVYKITTSIV 575 >gi|154248299|ref|YP_001419257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter autotrophicus Py2] gi|154162384|gb|ABS69600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter autotrophicus Py2] Length = 630 Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 164/625 (26%), Positives = 307/625 (49%), Gaps = 10/625 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 +L+ +RK + W+AKIFLV+L + FL+WG++D +F G+++V SVG ++ +F + Sbjct: 2 VLQTLRKGASGWIAKIFLVILTLSFLVWGIAD-VFRGMGATSVASVGATEISADAFRRQY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +L IS++ G ++ ++AR+ GLD++IL+ +++ ATLD+ + L ++ EIA Sbjct: 61 LDQLQQISRRAGRPISPDQARAFGLDRQILNQMIADATLDEQASRLALAVSDEQIAREIA 120 Query: 121 RSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P + F F L + E+ ++ + R ++ G+ +L+ Sbjct: 121 DNPNYRRPGATSFDPAYFQQLLRSNNLTEQRFVASERQRAVRDQLLKSLGAGVAVPQVLI 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 D RF E R+ Y+ + +A P++ VL +F+ +K +RAPEY++IS + Sbjct: 181 DAVGRFENETRTASYVRVTPAAAGPLAAPTDEVLRAYFDAHKVTFRAPEYRKISVLALTP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++ + +A+YE+N ++ +PE R V+Q+VF + +A A + +K G F + Sbjct: 241 ATLAAAETVTEADAKADYERNLSRFGTPERREVQQIVFTSAADALAADEKIKAGASFADI 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A +G + D LG +K I D +AD+ FS+ + + G FG V+ HV+ ++P Sbjct: 301 AAARGLTAKDTDLGLVAKSAILDPKIADAAFSMPEGA--VSAVEGRFGTVLVHVTKVEPG 358 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 F+ VK I+ +R+ +A + + + ++E+ A G+++ E++++ + VD Sbjct: 359 ARQPFEAVKDQISADLRLDRARRALLDKHDQVEDERASGSTLAEVAQKLGLRLQTFDAVD 418 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKESIPARDRK 478 +G G + A +P +L F + D TV LP +G ++W + PARDR Sbjct: 419 RSGHTPSG-DPADVPGGADVLSGAFAAQPGVETD-TVQLPQNGGFVWYETNAITPARDRT 476 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 +E + V W +T + V +KA L L+ +K G + L + R Sbjct: 477 FDEAKSAVTARWTESETEKAVEAKATAL-LDKAKAGTPLAQVAAEADLPLQIAEGLRRGR 535 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-QEKDKFISYLTQM 597 F + I+ VF VVF+VT V P + + + L++ Sbjct: 536 AAGP-FSAESIASVFDVKEGGFGIALAATEPDRVVFEVTKIMVPPPDMDTSRASAELSRQ 594 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNL 622 + D+L ++ ++ + V ++D L Sbjct: 595 IENDVLLQYLSAIQKEIGVKINDKL 619 >gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] Length = 633 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 166/633 (26%), Positives = 299/633 (47%), Gaps = 19/633 (3%) Query: 1 MLEIIRKASRTWVAKIFLV----VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W K ++ VL + F +WG++D +F G ST+ +G ++ F Sbjct: 1 MLRGIRNASSNWFGKTVMIIVMGVLIISFAVWGIAD-IFRGFGRSTLAQIGGTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I ++ G + ++AR+ G+D+++L +++ A LD+ + L Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLQLGQSDDETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ YI K+ R + G G+ PSN Sbjct: 120 RSILNDPSFKGTNGAFDPGRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSN 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L A +F E R++DY+ L + V I PS L ++E +K +RAPEY++++++ Sbjct: 180 TMLLVASQFQNEQRAIDYLKLTDAQVGTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVA 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K ++S+ + + +++ K+K +PE R V Q+VFPN +EA A + +G F Sbjct: 240 LTPESIAKWTDVSDADARKLFDERKDKLSTPEKRQVLQIVFPNAEEAQAARARITEGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + ++G +D+ LG K + D ++A F+L P I G+FG + V+ I Sbjct: 300 EDITNQRGLKPADVELGLVGKAEMLDPAVAKVAFALPLNEVSQP-IPGAFGTALVKVAKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P S++ V I + + +A +V + ++E+ A G ++ E S+ + ++ + Sbjct: 359 EPGVQPSYESVAPTIKRDVALERARAQVMAQHDKMEDARAGGANVIEASKMLGLNAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ G+ V IP +L F D + + + +G Y+W + P+R+ Sbjct: 419 AVDRSGRGPDGQPVKEIPQGLELATSAFNSDVGVDTEQ-INYQNG-YVWFDVLGVTPSRE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L EV V+ W+T + + + A +LV + GK ++ G + T + + R Sbjct: 477 RSLAEVKDQVEARWRTEQVTSRLRTMAAELVQKLGANGK-LAEVAPQ-GVKVETASGLKR 534 Query: 537 MDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKF 590 E G + VF + V P NG + V++VT+ V PV + K Sbjct: 535 ---EGATPGVPATVVEAVFRTAKDGVGQSPGGNGNEWFVYRVTDVTVPPVDLASDDAKKL 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L Q MN + + IA+L+ ++ + Sbjct: 592 KDALLQRMNDEQVGEYIAWLERDIGTKINQQAV 624 >gi|254503805|ref|ZP_05115956.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11] gi|222439876|gb|EEE46555.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11] Length = 635 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 167/627 (26%), Positives = 294/627 (46%), Gaps = 10/627 (1%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +RK + TW+AK+F+ +L F IWG++D L G +TV VG ++V F ++Q+L Sbjct: 1 MRKGAGTWIAKLFIALLIFSFAIWGVTDFLQGY-GQNTVAKVGEKEVSLLEFDRMYRQDL 59 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + Q+ G + + S+G+ ++ L L+ A + +++ + R+ I P Sbjct: 60 NRLGQQFGRPLTPQEGASLGIPQQALARLIGQAAMSNAAQELKVGISDDRLGAIIQSDPA 119 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G ++ L E EY+ + R V+ +GGM L Sbjct: 120 FQGASGRYDRSRLQQVLNANDYREDEYVVLRRQEAERGQVIEGLIGGMSAPQAYLAAFDA 179 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 F E RSV+Y+ + + I DP+ L +++ K ++RAPEY+ I Y+ + Sbjct: 180 FQNETRSVEYVAIAAEQIGDIEDPAEDTLVTYYDGKKADFRAPEYREIRYVELVPSALAR 239 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 +I++ + ++EY++ + PE R V QL F + ++A A Q+L GK F L ++ Sbjct: 240 PEDITDADARSEYDRRISDFAEPERRRVRQLSFNSDEDAQAAAQALAGGKTFADLMADRN 299 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + +D++LG S+ D ++ D+ F+L+ GD + V+ G F VI +V I P+ T F Sbjct: 300 LTNNDVTLGVMSRADFLDDAIGDAAFTLS-AGDTSDVVEGRFSNVIVNVEEIIPANTTPF 358 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +V+ +I ++ + +A ++ + +E+ A G +DEI R + D GK Sbjct: 359 ADVRDEIVEELALEQAEREILDLLDEVEDARAGGALLDEIGERFSLAVKSTGSFDRDGKT 418 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 + A +P E L+ F D + D + + + Y+W + P RDR L+EV Sbjct: 419 TIETD-AILPDAEGLIAGAFDSDIGIEND-VLQIGNRGYLWYDVTSVTPERDRDLDEVRD 476 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V WK+ + E +S KA L L ++ G + D+ G S+ T + R Sbjct: 477 QVIAAWKSDQLNERLSQKATDL-LAKAESGTSLGDLAAAEGVSVQTAEGVTR-SMPTGDL 534 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GP-VQEKDKFISYLTQMMNK 600 G D ++ +F GP V +G VV KVT S++ P E L+Q + Sbjct: 535 GSDALTAIFEGPAGSVATAESADGNGRVVLKVTGSEIPEFSPETSEVTALEGQLSQQVQN 594 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYL 627 LLD +A +++ V ++ + + + Sbjct: 595 SLLDLFVAEQETRAGVEINSAAVAQVM 621 >gi|170743494|ref|YP_001772149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp. 4-46] gi|168197768|gb|ACA19715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp. 4-46] Length = 632 Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 158/637 (24%), Positives = 312/637 (48%), Gaps = 13/637 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ R AS +W+ KI + V+F I+G+ D +F G++ V +VG K+ + Sbjct: 1 MLQGFRAASESWLGKIVITVVFGLLIAGLAIFGIGD-IFRGGGTAAVATVGSTKISAEAV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++++ ++ ++++ + ++AR++GLD+++L LV+ ATLDQ ++GL V Sbjct: 60 RSAYQNQIQRLARQARRPITPDQARALGLDREVLSALVTEATLDQKTRELGLRVGDDAVI 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F VF L + G++E ++ + +R + + Sbjct: 120 RLIKEEPAFKGANGAFDIGVFNDTLRQAGLSEAAFVQEQRAVAARLQLAESLTADLTVPL 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + D R+ E RS +I+L I P+ ++E++K +RAPE + ++ ++ Sbjct: 180 AVRDAIHRYTTERRSAAFILLPESAAGEIPAPTEEEARTYYEEHKGGFRAPEIRGVTILV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K ++ +E +A Y+ ++ +Y +PE RT++Q+VFPN+ +A A + ++ G+ Sbjct: 240 LDPTTLAKPDAVTAEEARARYDADRGRYGTPEKRTIQQIVFPNEADAAAALKRIRDGEAP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A E+G + LG+F++ + D ++AD+ F+L +G + + G FG V+ V+ Sbjct: 300 FESIAGERGLDPKSLDLGTFTRAELFDPAVADAAFAL-PQGTVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P F+EV I ++ +A + +++ + +E+ A + EI+R + + + Sbjct: 359 IEPGSIKPFEEVADQIRTEIARERARDGLEKVHDAIEDQRAGAKPLTEIARERDLPLVTV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 P D G+D KG+ V +P K+ +L +F + + + + G Y+W + PA Sbjct: 419 PATDAQGRDPKGQPVEGLPDKDAVLPAIF-RSEMGADSEALRTRAGGYLWYDVTRIDPAH 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 DR L+EV V WK + + +++KA + K G+ + G + + Sbjct: 478 DRPLDEVRDQVAAQWKADEVEKRLAAKAREAAERLDK-GETIEAVAAAYGVEARHASDLA 536 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE--KDKFISY 593 R ++ + + ++F+ V + + FKVT++ V P+ + Sbjct: 537 RGRAKDGLT-PESVGRIFATAVGKTGSASAGDKV-RAAFKVTSATVPPLPSGPQGGVEQQ 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 Q + D+L IA + Q V+V++ +R + GE Sbjct: 595 YRQALADDVLAEYIADAQRQAGVSVNEAAFRRAIGGE 631 >gi|192291606|ref|YP_001992211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris TIE-1] gi|192285355|gb|ACF01736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris TIE-1] Length = 629 Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 165/629 (26%), Positives = 299/629 (47%), Gaps = 37/629 (5%) Query: 5 IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 +RKAS W+ K I + VL V F +WG++D +F G ST+ +G ++ F ++ Sbjct: 1 MRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQFRQTY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 L I ++ G + ++AR++G+D+++L ++ A LD+ +GL I Sbjct: 60 NDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMKSIL 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G + +F + F + + G E+ Y+ ++ R + G G+ P L+ Sbjct: 120 EDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEPPKTLMQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 +F E R++DY+ L + IA PS A LT +++ +K +RAPEY+++S+++ Sbjct: 180 ALSQFQNEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKVSFLVVTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K E+S+ + Q +E+ K+K +PE R + Q+VFP+ +EA A + G F LA Sbjct: 240 SIAKWAEVSDADAQKLFEQRKDKLSTPEKRQILQIVFPSVEEAQAARAKIASGTSFADLA 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +E+G D+ LG S+ + D +A + F+L PV G FG V+ V+ I+P Sbjct: 300 KERGVKPGDLDLGLVSQSEMLDQKVAAAAFALPLNEVSQPV-QGQFGTVLLEVTKIEPGK 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + V + + +A ++V+E + ++E+ G S+ + +++ + ++ + +D Sbjct: 359 QPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVDALDR 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AG+ G VA+IP +L F +P + ++ +G Y+W I P+ +R L+ Sbjct: 419 AGRGPDGAPVASIPQGLELANAAF-NSEPGVDNDAISFQNG-YVWYDILGITPSHERPLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V+ W+ + E++ A +LV + + G D+ G ++ T + I R Sbjct: 477 EVKDKVEAGWRAEQVTEKLRKLAAELV-QKMQGGAKLADVAP-AGVTVQTASGIKRE--- 531 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 G D + N + VF+ G VQ Y+ ++ Sbjct: 532 ----GADA---------------GLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTG- 571 Query: 601 DLLDSV-IAYLKSQYSVTVHDNLIQRYLD 628 D+V A L + + DNL+QR D Sbjct: 572 ---DTVPTADLNAPQMQQLKDNLVQRLRD 597 >gi|209885424|ref|YP_002289281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] gi|209873620|gb|ACI93416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] Length = 704 Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 171/643 (26%), Positives = 306/643 (47%), Gaps = 43/643 (6%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR + W+ + VL + F +WG++D +F S +T+ +VG ++ F Sbjct: 71 MLRGIRNVTSNRVGKWIMSLLFGVLIISFAVWGIAD-IFKGSTQTTLATVGNTEISMEQF 129 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ +L IS++I +N+ + R+ GLD+++L ++ A LD+ +GL + Sbjct: 130 RTAYTDKLQQISRQIRRPINANQGRAFGLDRQLLQQTIAEAALDEETRRLGLTMSDAEMI 189 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I+ P F G D KF F + + G E+ Y+ ++ R ++V V G+ PS Sbjct: 190 RTISGDPTFAGPDGKFDARRFAAAIRDNGYTEQRYVAEQRRVTLRRELVSSIVAGLEPSK 249 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ RF E R++DY + I PS VL +++++K +RAPEY+++ Y+ Sbjct: 250 TQIEALSRFQNEQRTIDYAKIGPEQAGTIETPSQQVLDTYYDEHKAQFRAPEYRKVVYLT 309 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 E KK+ +S+++ + Y+ +++Y +P R V Q+ FP++ A A + + G F Sbjct: 310 LSPDELAKKVAVSDEDARKVYDSRRDEYATPAKREVLQIAFPSEDAAKTAREKIAGGTSF 369 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E + DI+LG S+ + D ++A + F+L PV G+ V+ ++ I Sbjct: 370 EDLAKEMKLTPGDINLGLTSEASLGDPTIAKAAFALPLNEVSQPV-KGALATVLLKITKI 428 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL----EEFLALGTSMDEISRREKI-- 410 +P +++ V I ++ A ++V+ D+ L E+ + G ++ E ++ + Sbjct: 429 EPGSQSTYESVAPAIKKEI----AEQRVRADFDNLRNTIEDERSGGATIPEAGQKVGLDA 484 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMW 465 V++D +D AG+ GKE AA+P L+ FG D DPL+ P G +W Sbjct: 485 VTVD---IDRAGRTPDGKE-AALPKGVDLVTAAFGSDVGVENDPLT------FP-GGEVW 533 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + +RDR L+EV V W+ + A + +KA LV E +G F+ G Sbjct: 534 FDVLGVTASRDRALDEVKDQVATRWREDQVATRLRAKAKDLV-EAINKGGAFKTEATKAG 592 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS---YVVFKVTNSKVG 582 S T++ R D N + F P + +NG + VV KV N Sbjct: 593 LSAQTSSPFKRDDKVNGLPD-QAVDVAFRTPKDTAAT--ADNGAAGNGLVVLKVVNVTTP 649 Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 V ++ K L Q ++ + + I +L+++ V V+ N Sbjct: 650 TVDLESEDSKKMKEALEQNLSDEQIGQYITHLEAKAGVQVNQN 692 >gi|304391667|ref|ZP_07373609.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130] gi|303295896|gb|EFL90254.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130] Length = 632 Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 166/640 (25%), Positives = 304/640 (47%), Gaps = 25/640 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R W AKI L++L F +WG++ ++ S +++V +VG KVP F++++ Sbjct: 1 MLGALRGFVTGWTAKILLILLVASFALWGITGSILSGGDTTSVAAVGETKVPVREFLSAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q+ G + + AR G++++ L N+V+ ATLD+F GL ++ IA Sbjct: 61 NRNMNEVQQRAGRRLTRDEARIFGVEQRALGNVVAWATLDEFARVHGLALSDKQLAQMIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P FH ++ + F + + + E ++I+ R+ + F G + Sbjct: 121 ENPAFHDSTGSYNRETFRQAVFQAQMRESDFIEAQNASAVRSQLTRSFADGPILPDTFKA 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD----PSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + E R +Y+ + PAIA P+ L +FE K NY APEY+++ + Sbjct: 181 ALANYAQEQRVFEYLTI----TPAIAGEPAAPTAEQLKTYFEANKANYAAPEYRKLDLLS 236 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +E+S++E++A+Y+ +Y PE R V+Q+VFP+++ A+ A +SL++G F Sbjct: 237 LRPEDLAASMEVSDEEIEADYQARISRYQEPERRRVQQIVFPSREAAEAAKKSLEEGAFF 296 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + E ++++D LG +K+ +P L D F L + + VI G FG VI V+ + Sbjct: 297 ETVVAEADRTMADADLGLMAKDALP-AHLQDPAFGL-EVNAISDVIDGPFGSVIVRVTEV 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR--EKIVSID 414 + T EVK I N M + +A+ ++ + +E+ A G+S+ E + + KI S++ Sbjct: 355 NEARTTPLDEVKDTIKNAMALERAASRITSLSEEIEDSRAGGSSLAEAAPKFDLKIRSVE 414 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 VD G+ G ++ IP LL + F + + ++ + + ++W + E A Sbjct: 415 ---VDARGRTPDGTQLTDIPQSSDLLRQAF-ETEVGAQASALDIGAAGFVWYDVTEIAAA 470 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL----T 530 RDR +EV + DW + + V KA L G + R++ + S L T Sbjct: 471 RDRTQDEVTERLTTDWMAAERGKMVQQKAEALKARLDG-GASMRELSAEVDPSTLGAAPT 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GPVQEK 587 T +NR F + F G + + ++ KV ++ Sbjct: 530 TQPLNRTGTAQGFPSA-ATQEGFKGAEGHIAIVDGSEAGTSILLKVKEVRLPEAAAAPNV 588 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+ ++ + DLL+ +IA L+ +Y VT + I L Sbjct: 589 DQQVNIANEGAADDLLNQMIARLQGEYGVTQNPQTIDMAL 628 >gi|319898755|ref|YP_004158848.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73] gi|319402719|emb|CBI76266.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73] Length = 621 Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/584 (28%), Positives = 291/584 (49%), Gaps = 36/584 (6%) Query: 11 TWVAKIFLVVLFVPF-LIWG------LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 +W AKIFL L + F L+WG +++ F SG ST+ I++++ Sbjct: 3 SWFAKIFLTALLLCFILLWGIPQLHTMNEKDFLTSGKSTIT------------IDTYR-- 48 Query: 64 LGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIEDIGLEADHGRV 115 L + Q + + S R D+ +L+ L D+ + + + Sbjct: 49 LALADQSLRLAITSHLGRMFTPDEIQRYKIPIFVLNQLQQDVLFDEQARKMKINLSKEAI 108 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +F +D F+ D+F++ L + NE + ++YTK R ++ + GM+ Sbjct: 109 ARIIGNDNIFQ-RDRVFNRDLFLNYLQQLRTNESNFFNYYTKKEKRNQLILASLSGMKAP 167 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 ++ + E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S Sbjct: 168 DIFYKALATYQEEKRIADYLVIDLKKEEKIADPNQEILEKWFDTHKEKFRAPEYRTVSLF 227 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + K +IS +E+Q Y +N ++ +PE RT+E+L F +K AD A + + +G Sbjct: 228 SMTSEKFLKPQDISVNEIQTYYTQNASRFITPEKRTIEKLRFSTRKAADNAAKKIAEGLS 287 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F L +E+ K+LSDI+ G ++ +P LA IF L KKG + VI+ G VI V++ Sbjct: 288 FDALVKEEKKTLSDITKGPLAENELPS-HLASEIFEL-KKGQISAVINDLQGPVIIRVTH 345 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I PS + ++V+KDI + A ++ Y +E G S+ E++++ ++ S+ Sbjct: 346 ITPSTQIPLEKVEKDIRQILAQNNAITYIRNKYTEIENARFEGASLTELAKQHRL-SLRK 404 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 +D GK +G + +P K+ LL ++ + + KD ++LP+G Y+W Q+ IPAR Sbjct: 405 ITIDKTGKTTEGITLTDLPQKDVLLNAIYQSREDIDKD-PLSLPEGGYLWYQVDMIIPAR 463 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 R L EV +V WK + + KA Q VL+ +GK+ + LG + TT + Sbjct: 464 YRTLSEVKQNVIAQWKEEEIQRLLDEKA-QGVLKQLAKGKSLDSLATELGTTKQTTPALR 522 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 R D+ +K G +G+ +F G + + + +V+K+T S Sbjct: 523 RQDS-SKILGIEGVKALFYGAKDHYGIVKGVDAKNRIVYKITAS 565 >gi|39935954|ref|NP_948230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris CGA009] gi|39649808|emb|CAE28330.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodopseudomonas palustris CGA009] Length = 633 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 168/637 (26%), Positives = 304/637 (47%), Gaps = 45/637 (7%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K I + VL V F +WG++D +F G ST+ +G ++ F Sbjct: 1 MLRGMRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I ++ G + ++AR++G+D+++L ++ A LD+ +GL Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + +F + F + + G E+ Y+ ++ R + G G+ Sbjct: 120 KSILEDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEAPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+ +F E R++DY+ L + IA PS A LT +++ +K +RAPEY++IS+++ Sbjct: 180 TLMQALSQFQSEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKISFLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K E+S+ + Q +E+ K+K +PE R + Q+VFP+ +EA + G F Sbjct: 240 VTPESIAKWAEVSDADAQKLFEQRKDKLSTPEKRQLLQIVFPSVEEAQAGRAKIASGTSF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+G +D+ LG S+ + D +A + F+L PV G FG V+ V+ I Sbjct: 300 ADLAKERGVKPADLDLGLVSQSEMLDQKVAAAAFALPLNEVSQPV-QGQFGTVLLEVTKI 358 Query: 357 ----KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 +P + +K+D+A + +A ++V+E + ++E+ G S+ + +++ + + Sbjct: 359 ETGKQPDYASVAASLKRDLAQE----RARKQVQELHDKMEDARGGGASVVDAAKQLGLTA 414 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + + +D AG+ G VA+IP +L F +P + ++ +G Y+W I Sbjct: 415 VTVDAIDRAGRGPDGAPVASIPQGLELANAAF-NSEPGVDNDAISFQNG-YVWYDILGIT 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P+ +R L+EV V+ W+ + E++ A +LV + + G D+ G ++ T + Sbjct: 473 PSHERPLDEVKDKVEAGWRAEQVTEKLRKLAAELVQKL-QGGAKLSDVAP-AGVTVQTAS 530 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592 I R G D + N + VF+ G VQ Sbjct: 531 GIKRE-------GADA---------------GLPNTVVDAVFRTAKDGAGQVQGGSATEW 568 Query: 593 YLTQMMNKDLLDSV-IAYLKSQYSVTVHDNLIQRYLD 628 Y+ ++ D+V A L + + DNL+QR D Sbjct: 569 YVFRVTG----DTVPTADLNAPQMQQLKDNLVQRLRD 601 >gi|217976694|ref|YP_002360841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella silvestris BL2] gi|217502070|gb|ACK49479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella silvestris BL2] Length = 636 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 169/628 (26%), Positives = 301/628 (47%), Gaps = 18/628 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ +R A++ W+ + I L + + F +WG+ D +F G++ + VG +++ +F Sbjct: 1 MLDAMRAATKGWIGRTVMGIVLGFIILSFAVWGIGD-IFRGFGANKLAEVGNEQITTEAF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ EL ++ + ++ A+ GLD+++L LVS A LDQ +GL + Sbjct: 60 RFAYQTELQRAQRQARRAITNDEAKRFGLDRQVLSRLVSEAVLDQETHALGLAMSDAEIA 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 IA P F G +F F L G+ EK ++ + R +++ G++ Sbjct: 120 RTIAADPSFKGASGQFDRARFEELLRDNGLTEKAFVREQRGVYLRQELIDSMTNGLQLPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L+ R+ E R++DY VL IA PS+ L ++FE K Y APEY+ + + Sbjct: 180 AMLELIHRYQTETRTLDYFVLPAAAAGTIALPSDDELGKYFEDRKLGYSAPEYRTLVTLT 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 K +S+ + Y++ K EKY +PE R ++QL F + A A + L G Sbjct: 240 LTPESIAKPDAVSDADALRRYDEIKGEKYGAPEKRQIDQLFFSDPAAAAAAREKLDAGAS 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F + +QG ++ D+SLG ++ + D ++AD F+L + PV FG V+ V+ Sbjct: 300 FEDIVAQQGSTMKDVSLGLVTRGQLIDKAVADVAFALPESAVSAPV-KTQFGSVLIRVAA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+PS F++VK++I ++ T+A ++ + +E+ A G ++ E ++ + + Sbjct: 359 IEPSSAKPFEDVKEEIKREIATTRARGEIARLHDAIEDQRASGKTLTEAAKSAGLEVRVI 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH-TVALPDGSYMWVQIKESIPA 474 P VD GKD G +A + LL F D L D+ T++LP G Y W ++ + A Sbjct: 419 PAVDAGGKDAAGVPIADLANSAALLKAGFASD--LGVDNETLSLPQGGYQWFEVGKIDRA 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R + EE V+K W+ +TA+ +++K L + G+ + G + + Sbjct: 477 RQKSFEEAKPAVEKAWRDDETAKLMTAKTIDLTKRL-ESGEPMAKVAAEGGFEVKRAQNV 535 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 R +N F ++Q F+ V V +E G +VFKV + P+ D + L Sbjct: 536 RRGGGDN--FPQPAVAQAFNVGVGGVGSTRLEAG-DRLVFKVAGATAPPIDFADATLVSL 592 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + K D ++ +QY T+ + L Sbjct: 593 ANEVKKSYSDDLV----TQYLGTLQNKL 616 >gi|163854063|ref|YP_001642106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] gi|163665668|gb|ABY33035.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] Length = 634 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 312/645 (48%), Gaps = 27/645 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54 ML+ IR AS+ W+ K+ L V+F FLI G+ A+F V GSST V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL Sbjct: 58 EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F + F +F L R G+NE ++ +++R + V M Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPV 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + R+ E R + L I P++ LT ++E K ++RAPEY+ ++ Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALTTYYENNKASFRAPEYRSLNL 237 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGE 297 Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V Sbjct: 298 TPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409 + I+P F EVK +I ++ + + +KV++ +E+ A + EI++ + Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + +P VD G D G+ VA IP KE L F + D + + G +W + Sbjct: 414 LTLLSIPAVDAQGNDPSGQPVAGIPDKETTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + P+ ++ L EV +V K W + + + +K+ +L K G+ + + G L Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLK 531 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586 T +I R ++ + + ++F+ PV P G + VFKVT + + P Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588 Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 D + ++ L + D+L IA ++ V V+ ++R GE Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|188584391|ref|YP_001927836.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium populi BJ001] gi|179347889|gb|ACB83301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium populi BJ001] Length = 634 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 165/647 (25%), Positives = 311/647 (48%), Gaps = 31/647 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F S+TV +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLTVIFT-FLIAGVAIFGVEEFFRGGSSTTVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTADLGLAVSDAAVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V + Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R + L I P+ L+ +++ K ++RAPEY+ ++ ++ Sbjct: 180 AMREAVHRYSTERRDAAVLTLAPSVAGEIPAPTEEELSAYYDNNKASFRAPEYRSLNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 D K E+S +E + Y+ N ++ PE RT++Q+ FP++ A EA ++ G+ Sbjct: 240 LDPAALAKPDEVSEEEARKVYDANHSRFGKPERRTIQQISFPDEAAAKEARAKIESGETP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A +G + LG+ +K + D ++ D+ F+L ++G + + G FG V+ V+ Sbjct: 300 FETVAAARGLDPKQLDLGTLTKAELFDPAVGDAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREKIV 411 I+P F EVK +I ++ + + +KV++ +E+ A + EI++ + + Sbjct: 359 IEPGTVKPFDEVKDEIRREIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQGLT 415 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGSYMWVQ 467 + +P VD G D G+ VA IP KE L F G D + + T G +W Sbjct: 416 LLSIPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVGNDTEVLRTKT-----GGAIWYD 470 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + P+ ++ L EV + K W + + + +K+ +L E ++G+ + + G Sbjct: 471 VVKIDPSHEKPLAEVRDEAVKGWTRAEVEKRLVAKSKELT-ERLEKGEAIETLAQEAGLP 529 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PV 584 L T +I R ++ + + ++F+ PV P +G VFKVT + + P Sbjct: 530 LKTVGEIARNQTKDD-LSTEIVERIFATPVGKAASAP--SGEGRAVFKVTAATMPAFVPG 586 Query: 585 QEKD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 D + ++ L + D+L IA ++ V V+ ++R L GE Sbjct: 587 TPSDTQLVASLRTAIADDVLAEFIAEVQKSAGVNVNQTALRRALGGE 633 >gi|298291797|ref|YP_003693736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM 506] gi|296928308|gb|ADH89117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM 506] Length = 629 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 178/628 (28%), Positives = 301/628 (47%), Gaps = 22/628 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +RK++ VAKI + +L V F IWG++D +F GS T+ ++G ++ F + Sbjct: 1 MLETLRKSASGIVAKILMGLLIVSFGIWGIAD-VFRGFGSQTLATIGDTEITVPEFRQLY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q L +SQ++ + E+AR+ G+ ++L ++ A L+ + +GL + + Sbjct: 60 QQRLQQVSQQLKRGITPEQARAFGIPDQLLQEQLAEAALNDQAKSLGLALSDAEIARRVQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G F + F L G E +++ + R ++ GG+ +L D Sbjct: 120 SNPSFFGPGGSFDPNYFNQLLRSNGFTEARFVEAERGLAVRQQLIQSLGGGVTVPQVLKD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R+ E RSV+Y +L +PA+A+PS+ L ++F++ K +RAPEY+++S ++ Sbjct: 180 ALARYESEERSVNYAMLTAHALPALAEPSDEELRKFFDERKIAFRAPEYRKVSVLVLTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 IS+ +++A Y+ N Y +PE R V+Q+VFPN++EA A + G F + Sbjct: 240 ALANSESISDADVEAAYKANLASYGTPEKRVVQQIVFPNEQEAAAAAARITAGTPFADII 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ D+ LG ++ I D ++AD+ F+LA + V+ G FG VI HV + P Sbjct: 300 AERKLEAKDVELGDVTRADIFDKAVADAAFALAPDAT-SGVVAGRFGPVIVHVGTVTPGT 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV--SIDLPLV 418 T EV I Q+++ A V Y ++E+ A G + EI+ + I S D Sbjct: 359 TKPLTEVAGQIRTQLQLDTARRAVLTKYDQIEDERAGGAMLAEIASKAGIPVQSFD---T 415 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKESIPARDR 477 + G+ G + +IP + ++L F D S + V LP +G Y+W + RDR Sbjct: 416 NIQGQTPDGSSIPSIPGRAEVLRGAFAADVG-SDNDPVQLPQNGGYVWFAVDGITAPRDR 474 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 EE V WK +TA+ + K + + + G+ F + G L N + R Sbjct: 475 TFEEARAQVLDRWKQDQTAQALDKKVEDIKAKVAG-GEAFDKAVTDAGLELRAANGLRRG 533 Query: 538 DNENKFFGYDGISQ-----VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFI 591 DG+ Q VF P V E G S ++F+V V P +D K + Sbjct: 534 R------AADGVPQDILEAVFETPQGQVGSSLAEGGESRLLFQVLRVSVPPAATQDEKLL 587 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 S + Q + DL+ + L+ Q ++ Sbjct: 588 SDVRQSLENDLMTEYVVELQGQLGPRIN 615 >gi|218533006|ref|YP_002423822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] gi|218525309|gb|ACK85894.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] Length = 634 Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 311/645 (48%), Gaps = 27/645 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54 ML+ IR AS+ W+ K+ L V+F FLI G+ A+F V GSST V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL Sbjct: 58 EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F + F +F L R G+NE ++ +++R + V M Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPV 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + R+ E R + L I P++ L ++E K ++RAPEY+ ++ Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNL 237 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGE 297 Query: 295 -KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V Sbjct: 298 TPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409 + I+P F EVK +I ++ + + +KV++ +E+ A + EI++ + Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + +P VD G D G+ VA IP KE L F + D + + G +W + Sbjct: 414 LTLVSIPAVDAQGNDPSGQPVAGIPDKETTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + P+ ++ L EV +V K W + + + +K+ +L K G+ + + G L Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQETGVPLK 531 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586 T +I R ++ + + ++F+ PV P G + VFKVT + + P Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588 Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 D + ++ L + D+L IA ++ V V+ ++R GE Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|240141517|ref|YP_002965997.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens AM1] gi|240011494|gb|ACS42720.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens AM1] Length = 634 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 311/645 (48%), Gaps = 27/645 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVV-SVGRQKVPFS 54 ML+ IR AS+ W+ K+ L V+F FLI G+ A+F V GSST V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIFT-FLIAGV--AIFGVEEFFRGGSSTAVATVGKTPISAE 57 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL Sbjct: 58 EVRTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDAT 117 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F + F +F L R G+NE ++ +++R + V M Sbjct: 118 VLRAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMLV 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + R+ E R + L I P++ L ++E K ++RAPEY+ ++ Sbjct: 178 PQAIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNL 237 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 238 LVLDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGE 297 Query: 295 K-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V Sbjct: 298 SPFETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREK 409 + I+P F EVK +I ++ + + +KV++ +E+ A + EI++ + Sbjct: 357 TAIEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQD---AIEDARASAKPLAEIAKDQG 413 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + +P VD G D G+ VA IP KE L F + D + + G +W + Sbjct: 414 LTLLSIPAVDAQGNDPSGQPVAGIPDKESTLPAAF-RADVGNDTEVLRTKAGGAIWYDVV 472 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + P+ ++ L EV +V K W + + + +K+ +L K G+ + + G L Sbjct: 473 KIDPSHEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLK 531 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586 T +I R ++ + + ++F+ PV P G + VFKVT + + P Sbjct: 532 TITEIGRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGRA--VFKVTAATMPAFVPGTP 588 Query: 587 KD-KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 D + ++ L + D+L IA ++ V V+ ++R GE Sbjct: 589 SDGQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|114707419|ref|ZP_01440315.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506] gi|114536978|gb|EAU40106.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506] Length = 629 Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 171/627 (27%), Positives = 293/627 (46%), Gaps = 8/627 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +RKA+ W AKI L +L + F +WG+ D +F + V+SVG VP + + ++ Sbjct: 1 MLNSLRKATTGWTAKILLGLLVISFAVWGIGD-VFRSGNQNAVLSVGETDVPLAEYALTY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q I++++G + E A + G+D+ +L LVSGA L + +IGL R+ IA Sbjct: 60 NQASSGIARQLGRPLTPEEAATFGIDQAVLSQLVSGAVLTEQARNIGLGISDERLARLIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F FS F + L + + E +YI+ RT +V G+ + Sbjct: 120 DDPSFQDASGNFSRAQFRNLLNQARLRESDYIEFQEDAAMRTQIVDAVSNGITLPKAYEE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E R+V YI + + + +PS+ L +FE+ K +Y APEY+ ++ Sbjct: 180 ALGLFNGERRNVSYISVGPGALESEPEPSDEALQAYFEENKQDYAAPEYRGLAVARLTRE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I+++++ A+YE+ + +Y E R V Q+VF ++ A EA + L G F +A Sbjct: 240 TIADESAITDEQVAADYEQYQSRYGEAERRQVSQIVFGDEAAATEAAEKLANGATFENVA 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 GK+ +D ++G ++E IPD S+ D+ F+L + G + VI G FG I VS I+ + Sbjct: 300 RAAGKNPADTAIGLVTREDIPDPSIRDAAFAL-ESGQTSDVIDGRFGPTIVRVSEIQEAS 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +EV DI + + AS+ + Y+ E+ A G + +E ++ + VD Sbjct: 359 VTPLEEVAGDIRRDLALNNASDTLNAAYQTYEDARASGATFEEATQEAGLKVETYEAVDS 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G++ G+ + I LL F + +P + + D Y++ + + PARDR L+ Sbjct: 419 QGRNPSGEAIEGISGNGDLLEEAF-QTEPGFDNIPITTEDNGYLFFDVTDIQPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DW +T V +A L E GK+ +I + G + + I R Sbjct: 478 EVRQQVVDDWTRDETLRLVEERAAALAEEARG-GKSLENIAEENGLEVASAVGITRQSGA 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQEKDKF-ISYLTQM 597 + + SG V L VV K+ P+ ++ I + Sbjct: 537 GEIGAQASQAAFASGQ-GSVAAAKGRGELEQVVLKIDEVAPPAAPLDNVNRTQIGQVQTG 595 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + DL+ S + ++ +Y + ++ N I+ Sbjct: 596 LTNDLVQSYVTRVQGEYPLQIYPNGIE 622 >gi|299134975|ref|ZP_07028166.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] gi|298589952|gb|EFI50156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] Length = 617 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 166/627 (26%), Positives = 299/627 (47%), Gaps = 43/627 (6%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +L V F +WG++D +F S +T+ +VG +P F +++ +L IS++I + Sbjct: 3 VLFGILIVSFAVWGIAD-IFKGSTQTTLATVGNTDIPLEQFRSAYTDKLQQISRQIRRPL 61 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + R+ G+D+++L ++ LD+ +GL + I+ P F G + KF Sbjct: 62 TPTQGRAFGIDRQLLQQTIAETALDEEGRRMGLRMSDAEIVRTISSDPTFAGPNGKFDPA 121 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F + E+ YI ++ R +++G V G+ P+ ++ RF E R++DY Sbjct: 122 RFAMAMRDYSYTEQRYIAEQRRLTLRRELIGSIVAGVEPTKTQIEAISRFQDEQRTIDYA 181 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 + I PS L +FE +K +RAPEY+++ Y+ E KK+ +S+D+ + Sbjct: 182 KIGPDQAGTIEAPSPDALNTYFEAHKAQFRAPEYRKVVYLTLSPDELAKKVVVSDDDARK 241 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 Y+ + Y P+ R V+Q+ F ++ A A + G F LA++ + D++LG Sbjct: 242 VYDSRRADYVKPDRREVQQIAFQSEDAAKAARAKIAGGMSFEDLAKDMKLTSGDMNLGLV 301 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S++ + D +A + F+L PV G+ V+ V+ I+P T +F++V I ++ Sbjct: 302 SEKSLGDPIIAKAAFALPLNEVSQPV-KGALATVLLKVTKIEPGSTEAFEKVAPAIKKEI 360 Query: 376 RITKASEKVKEDYKRL----EEFLALGTSMDEISRREKI--VSIDLPLVDFAGKDVKGKE 429 A ++V+ D+ ++ E+ + G S+ E +++ + ++D VD +G+ GKE Sbjct: 361 ----AEQRVRTDFDKMRNAVEDERSGGASIAEAAQKSGLEATTVD---VDRSGRTPDGKE 413 Query: 430 VAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 AA+P L+ FG D DPL+ P G +W + P+RDR L+EV Sbjct: 414 -AALPKGVDLITAAFGSDVGVDNDPLT------FP-GGEVWFDVLGITPSRDRTLDEVKD 465 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V W+ + A + +KA +LV + +K G + A+ LTT E+K Sbjct: 466 QVTARWRDEQVATRLRAKAKELVEKINKGGV----FATEVKAAGLTTQTSTPFKREDKVN 521 Query: 545 GY-----DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLT 595 G D + G M + P +G+ VVF+VTN V K L Sbjct: 522 GLPDIVVDTAFRTAKGSAAMAENIPASSGV--VVFQVTNVATPAVDLNSDASKKMKEGLA 579 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNL 622 Q ++ + + I +L++ V V++N+ Sbjct: 580 QNLSDEQIGQYITHLETTLGVKVNENV 606 >gi|296446388|ref|ZP_06888333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] gi|296256161|gb|EFH03243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] Length = 635 Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 174/641 (27%), Positives = 307/641 (47%), Gaps = 18/641 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 MLE +R AS+ + ++ L ++ + F +WG+ D +F + + VG ++ ++ Sbjct: 1 MLEGLRIASQHRIGRVILGIVMGFIALSFAVWGIGD-VFRGFSTKRLAKVGSGEITVEAY 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ EL + Q+ + +E AR GLD+++L +++ TLDQ +GL V Sbjct: 60 RGAYQNELRRLQQRARRAITNEEARRYGLDEQVLQRMITELTLDQKARALGLAIGDPDVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 + +F G KF D F L G E+ ++ R ++ VG M P Sbjct: 120 KLVRDENVFKGPTGKFDSDRFKQILRDAGYTERSFLAEQKSGYVRKELTDSVVGAMEPPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+L+ RF E R VDY L IA PS L ++FE + ++RA EY+R+ + Sbjct: 180 LVLEALHRFRNEARDVDYFELPAAAAGEIAAPSEEELKKYFEDREQSFRAKEYRRLVILA 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 K E+S +E + Y++ K K Y + E R + QL+F + EAD A + L+ G Sbjct: 240 ATPASLAKPQEVSEEEARKLYDEVKTKRYGTAEKRHLRQLLFAAKDEADAALKRLEGGLS 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F LA E+ + DI LG + + ++ L+D +F+ K G PV +FGY I + Sbjct: 300 FEALATERKLATKDIDLGLLEAKDLGEIKLSDKVFAPEKPGFVGPV-QTAFGYAILEIEK 358 Query: 356 IKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I PS T SF++ + ++ ++ +A+ +V++ + +E+ A G ++ E ++ + + Sbjct: 359 IVPSVVTRSFEQTRDELRGEIARERAAPQVQKVHDAIEDQRAGGKALAEAAKSLGLEVVA 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + D +G+D G+E+ ++ E LL F D + D TVA DG Y+W ++ + PA Sbjct: 419 VEATDASGRDKAGQEIPSVFGSEDLLKAAFASDVGVDND-TVATRDGGYLWFEVAKVEPA 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R R EE +V+ + + + +++KA+ L E + GK D+ K+ GA N + Sbjct: 478 RQRSFEEAKPNVEIAVREERLQKALAAKADALAAEL-RAGKTIADVAKSAGAESRRANDV 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590 R N I VF PV ++ G +VF+V N+ P E Sbjct: 537 KRAP--NPAIPNAAIIAVFDTPVHGAGSVAVDGG--RLVFRVENATTQPYDASSLEAKAA 592 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 + D+L+ + L+ Y+V+++ ++ GE+ Sbjct: 593 AEQMKPAFTNDILEQYVGALEKIYNVSINQKALEAATGGEQ 633 >gi|328543803|ref|YP_004303912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [polymorphum gilvum SL003B-26A1] gi|326413547|gb|ADZ70610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polymorphum gilvum SL003B-26A1] Length = 630 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/540 (26%), Positives = 270/540 (50%), Gaps = 13/540 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + T+VAKIF+ +L + F +WG++D +F G + VG ++ SF ++ Sbjct: 1 MLDALRKGAGTFVAKIFIALLILSFAVWGIAD-IFQGFGRNVAARVGDTEISLQSFDQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++EL +S++IG +++ +GL +++L LV+ A LD + L + I Sbjct: 60 RRELSALSRQIGRPLSTTEGAQIGLPQQVLGRLVAEAALDDDARAMTLGISDAELIRVIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F F L GI+E +Y+ ++ R + G + +LL+ Sbjct: 120 ADPVFQRPGGGFDRARLAQLLRANGISEDDYVVERRRLAERQQIAEALSGSLISPQVLLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R+V Y++L V +IA+P +A L +F+ + +RAPEY+R++ + Sbjct: 180 AFNAYQNETRTVRYLLLTPAAVGSIAEPDDAALEAYFDDNRAAFRAPEYRRLALLELTPD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + E+++ + ++ YE+ ++ E R V Q+ FP+ A A + L G F +L Sbjct: 240 AVARPDEVTDADARSAYERAGSRFSEDERRRVRQMPFPDADAARAAAERLASGASFAELM 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ + +D+ LG K D ++A++ F+L +G + + G F VI + I+P+ Sbjct: 300 AERNLAEADVDLGLMRKSDFLDPAIAEAAFAL-DEGAVSGAVEGRFATVILEAAEIRPAA 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F+EV+ ++ ++ +A +V + + +E+ A G ++ EI+ R K+ P +D Sbjct: 359 TRPFEEVRDELKQEIARERAEREVLDIHDEIEDARAGGAALAEIAERFKLALATPPALDA 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 GK G V ++P + LL F D + D + L + ++W ++ E IPARDR L+ Sbjct: 419 TGKAETGATV-SLPDGDGLLREAFDSDVGIEND-PLPLGERGFVWYEVAEVIPARDRPLD 476 Query: 481 EVLTDVKKDWKTV----KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 EV V W + A+ + A++L K G++ + +LG + T+ + R Sbjct: 477 EVRPSVVIAWGAAERIKRLADLSAGTADRL-----KAGESLDVVAADLGLEVKTSAPLKR 531 >gi|121602029|ref|YP_988842.1| hypothetical protein BARBAKC583_0527 [Bartonella bacilliformis KC583] gi|120614206|gb|ABM44807.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 629 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/590 (26%), Positives = 290/590 (49%), Gaps = 24/590 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSF--- 56 ML+ IR + +WV KIF +L + F+ +WG+ ++ S +++ G+ + + Sbjct: 1 MLDSIRNTTNSWVTKIFFAILLLCFVFLWGIPQ--LNIKNESNLLTSGKSVITVDDYRLA 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + L + SQ +G +++ + + G+ + L D+ + + + Sbjct: 59 LADYSLRLALASQ-LGRMLSPDEIQQYGIPAFVFYQLQQDILFDEQARKMKISLSQDALA 117 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I+ +F N F+ ++F++ L + I++ ++D+YT+ R ++ + G + N Sbjct: 118 HIISSDSIFQTNGN-FNRNLFLNYLQQLNISQSHFLDYYTQREKRNQLILASLSGAKIPN 176 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + E R+ DY+V+N I+ P+ L +WF+ +++ +RAPEY+ +S + Sbjct: 177 LFYEAFALHREEKRTADYLVVNLEKEKKISTPNKETLQKWFDTHRNMFRAPEYRTVSLLS 236 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 ++ K IS +E Y +N ++ PE R +E+L FP ++ AD+A Q + G F Sbjct: 237 ITPNDFVKLENISANEAMTYYNQNASRFTVPEKRIIEELRFPTREAADKAAQKIANGMSF 296 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 QL + + K+L DI G ++ +P+ LA IF L K+G + VI+ G +I V I Sbjct: 297 DQLVQSEKKTLKDIKKGPLAESELPNY-LASDIFEL-KQGQISAVINDLQGPIIVRVMQI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 PS + F+++++DI + +A ++ Y +E G S+ E++ + + S+ Sbjct: 355 IPSGPIPFEDIEQDIRQTLAQNRAVTDLRSKYTEIENARFEGASLKELADQYNL-SLRQI 413 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKES 471 +D GK ++G + +P KE +L ++ DPLS L +G Y+W Q+ Sbjct: 414 TIDKEGKTIEGVMLTDLPQKEIVLSAIYQATEGSELDPLS------LQEGGYLWYQVDAI 467 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 PARD+ LEEV + +WK K + + KAN +L+ EGK+ + L TT Sbjct: 468 TPARDKALEEVEKEAVAEWKNAKIQQLLDEKANN-ILKQLTEGKSLDSLAAKLSVKKKTT 526 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 + R D+ + G +G+ +FSGP + +++K+T S + Sbjct: 527 PALRRQDSSD-ILGIEGVKALFSGPKGHYGIIKGAVATNRIIYKITESSI 575 >gi|319408341|emb|CBI81994.1| conserved exported hypothetical protein [Bartonella schoenbuchensis R1] Length = 628 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 161/595 (27%), Positives = 290/595 (48%), Gaps = 34/595 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R A +W A++F +L + F+ +WG+ G +++ G+ + ++ Sbjct: 1 MLDTLRSAKNSWFARLFFAILLLCFIFLWGIPQ--LYTQGERDLLTSGKSTITVDTY--- 55 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 L + Q + +NS R + ++I +S L+Q +D+ ++ + Sbjct: 56 ---RLALADQSLRLALNSHLGR-MFTPEEIQQYRISAFVLNQLQQDVLFNEQARKMKINL 111 Query: 120 ARSPLFHG--------KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 ++ + ++ FS D+F++ L + +N+ ++ D+YT+ R + + G Sbjct: 112 SKDMIAQAISADNIFQENGAFSRDLFLNFLQQLRVNQNDFFDYYTQKEKRNQLTLALLSG 171 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 M+ +L + E R DY ++N + + ADP L +WF+ +K+ +RAPEY+ Sbjct: 172 MKVPDLFYKAFAIYQEETRIADYFIVNLKEKESTADPDQKTLQKWFDTHKNAFRAPEYRT 231 Query: 232 ISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +S +L EK ++E IS DE + Y +N ++ +PE R +E+L FP +K ADEA + + Sbjct: 232 VS-LLSITPEKLVQLEDISKDEAKTYYTQNISRFTTPEKRIIEELRFPTRKAADEAAKKI 290 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 G F L + + K+L+DI G K P+ L IF L KKG + VI G VI Sbjct: 291 ADGLSFDDLVKAEKKTLNDIKKGPLVKSERPNY-LESEIFEL-KKGQVSTVIDDLQGPVI 348 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V +I PS + F+ V+K+I + +A+ + Y +E G S+ EI+ + Sbjct: 349 IRVIDITPSSPIPFETVEKNIRQTLAQNRAATDMHNKYTEIENARFEGASLKEIADQ--- 405 Query: 411 VSIDLPL----VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 +LPL +D G ++G + +P K+ LL ++ + D ++L +G Y+W Sbjct: 406 --YNLPLRKVTIDKKGITIEGITLTDLPEKDILLDAIYQANVETEPD-LLSLQEGGYLWY 462 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 Q+ IP+RDR LEEV D WK+ + + KA + + +K GK+ + G Sbjct: 463 QVDTIIPSRDRALEEVKQDAIAQWKSEEIQRLLDEKAENALKQLNK-GKSLDSLAAEFGV 521 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 TT + R D+ ++ FG++ I +FS P + +V+K+T S + Sbjct: 522 KKQTTQALRRQDS-SEVFGFEDIKALFSKPKGHYGIAKGTLTTNRIVYKITASAI 575 >gi|49474119|ref|YP_032161.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana str. Toulouse] gi|49239623|emb|CAF25982.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana str. Toulouse] Length = 629 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 164/596 (27%), Positives = 289/596 (48%), Gaps = 35/596 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSF--- 56 ML IIR A+ +WVA+IFLV L + F+ +WG+ ++S G + + Sbjct: 1 MLNIIRNATNSWVARIFLVSLLLCFIFLWGIPQ--LHTKSERDLISSGESTITVDDYHLA 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L + S +G + + + + L D+ + + + Sbjct: 59 LADQSSRLALASH-LGRMFTPNEMQQYQIPTFVFSQLQQDVLFDEETRQMKINLSKDAIA 117 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 + +F + F+ ++F + L + I+E ++D+YTK R ++ + GM+ + Sbjct: 118 RSLGADNMFQ-INGVFNQNLFRNYLQQLHISESNFLDYYTKKEKRKQLIAASLSGMKAPD 176 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + E R DY+VL+ + I+DP L +WFE +K+ +R PEY+ +S + Sbjct: 177 FFYKALALYQGETRIADYLVLDLKEKKTISDPDQETLQKWFETHKNEFRVPEYRTVSLLS 236 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + K +IS DE +A Y +N ++ +PE RT+E+L FP ++ AD A + + G F Sbjct: 237 MKLAKFIKPEDISEDEARAYYTQNTSRFIAPEKRTIEELRFPTREAADNAAKKIADGLSF 296 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 L + + K+L+DI G ++ +P+ LA IF L K+G + VI+ G VI V++I Sbjct: 297 DDLVKAEKKTLNDIKKGPLAESELPN-RLASEIFEL-KQGQVSAVINDLQGPVIIRVTSI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 PS + F+ V+++I + +A++ ++ +Y +E G S+ E++ + K LP Sbjct: 355 VPSSPIPFENVEENIRQMLAKNRAADDMRNNYTAIENARFEGASLKELADQYK-----LP 409 Query: 417 L----VDFAGKDVKGKEVAAIPYKEQLLFRVF----GKD-DPLSKDHTVALPDGSYMWVQ 467 L +D GK +G + +P K+ LL ++ G D DPLS L G Y+W + Sbjct: 410 LRTITIDKTGKTSEGTILIDLPEKDILLNSIYQSNEGADLDPLS------LQGGGYLWYK 463 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + IPARD+ EE + WK+ + + KA L+ G++ + LG + Sbjct: 464 VDTIIPARDKTFEEAKQNAIVQWKSEEIQRLLDEKAKD-ALKQLTAGQSLVSLAHILGVT 522 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSK 580 TT + R D+ ++ FG +GI +FS G +VK N + Y + +VT K Sbjct: 523 KQTTQPLRRQDS-SEIFGLEGIKALFSDSKGHYGIVKGPVATNRILYQIKEVTMPK 577 >gi|83310913|ref|YP_421177.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] gi|82945754|dbj|BAE50618.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] Length = 623 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 160/634 (25%), Positives = 292/634 (46%), Gaps = 22/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++ R AS+TW+ ++ +L + F+ WG D + G S + +GR + + + + Sbjct: 1 MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGRTSMSAAEVMGEF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K+E+ + G + +E AR +G+ + +D+L++ +D+ +GL A + +A Sbjct: 61 KREVERLQPLFGGKLTAEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G +F D+F SRL+R G E ++ + R +V G+ L D Sbjct: 121 SNPAFKGPTGQFDRDLFRSRLSRLGHTEDSFMKTERTNMVRNQMVETVAAGIGAPQALTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + ++ + P A P AVL +++ + APE++ ++ +L Sbjct: 181 PLLAWREERRVAETFLIKDESTPLPAAPDAAVLEAYYKDNVSRFMAPEFRALTVLLLRPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I+I + ++ Y + E++ +PE R V Q+VF A +A + GK +A Sbjct: 241 DVAGGIDIDEEMVRDAYRQRIEEFSTPERRAVSQIVFDESSAAAKATDLVTGGKDLATIA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + I LG K +P+ LA+++F L+ PV + G+ + VS I+P Sbjct: 301 KALNSEI--IDLGVIEKNDLPE-GLAEAVFKLSSGATSQPV-KTALGWHVVKVSQIQPGR 356 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF EVK + MR KA++ + E R+E+ L G +++E ++R + ++ + VD Sbjct: 357 TRSFDEVKAQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTVKIAAVDA 416 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD----DPLSKDHTVALPDGSYMWVQIKESIPARD 476 G+ GK VA +P +Q L F D PL++ +P+ Y + + Sbjct: 417 QGRGADGKPVADLPKSDQFLDVAFHTDQNTESPLTE-----VPNNGYFLLHVDGVTAPAP 471 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + L E+ ++V W+ + E+ KA +L + K G+ + + GA L T+ R Sbjct: 472 KPLAEIRSEVVATWQAERRQEQARDKALKLA-DRIKVGEGIAQVALSAGAKLETSKPFVR 530 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVGPVQEKDKFI 591 E I+++F + P++ G L+ VV TN+ Q + + Sbjct: 531 EPAEGTALPATIIAELFKAQPGGIATAPVQGGTLVARLAKVVTFDTNANPALTQAARQRV 590 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 S Q + D+ D IA L + V V + R Sbjct: 591 S---QAVATDIADQYIAALNASIGVKVDRPQLTR 621 >gi|170749508|ref|YP_001755768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] gi|170656030|gb|ACB25085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] Length = 633 Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 165/644 (25%), Positives = 300/644 (46%), Gaps = 26/644 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ KI L ++F LI G+ + F S+ V +VG + Sbjct: 1 MLQGIRNASQHWLGKIVLTIIFT-LLIAGVGIFGVEEFFRGGASNKVATVGSTPITAEQV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR +GLD++++ L++ A LDQ D+GL V Sbjct: 60 RQAYQNQLQRYQTQLKRPLTPDQARMLGLDRQVMSQLITEAALDQKTHDLGLAVPDASVI 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I F + +F +F L R G+NE ++ +++R + + Sbjct: 120 KAIHEEKSFQNQQGQFEPQLFYQTLQRAGLNEGLFVREQRSVIARLQLAEAVSSDLHVPL 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R+ Y++L I DP++ L W+E K +RAPE++ ++ ++ Sbjct: 180 AMREAVHRYTTERRAAAYLMLTPSVAGQIPDPTDDELKTWYEANKSGFRAPEFRSVNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + K I+ + +A Y NK++Y +PE RT++Q+VFP+ A+ A +++ G K Sbjct: 240 VEPEAMAKPDAITEADARAAYALNKDRYGTPEKRTIQQIVFPDAAAAEAARKAITDGSKT 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A E+G D++LG+ +K + D ++AD+ F+L + G PV G FG V+ V+ Sbjct: 300 FDAVAAERGTDEKDLTLGTLTKSELFDKAVADAAFALPEGGVSQPV-QGRFGTVLLRVTK 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+ F+ V+ +I + + +A + ++ +E+ A + +I+ + + + Sbjct: 359 IEAGTVKPFEAVEGEIRKALALARARDAMETTRDAIEDQRAGAKPLADIAAERGLKIVTV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVF-----GKDDPLSKDHTVALPDGSYMWVQIKE 470 VD GK G+ V IP E L +F G ++PL G Y+W + Sbjct: 419 KAVDANGKGPDGQRVTDIPDAETTLPALFRAEIGGDNEPLRTKT------GGYVWYDVTG 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A D+ L++V VK W + A+ + +K +LV + +K G+ + +G +L Sbjct: 473 IDAAHDKPLDQVKDGVKAGWTATEIAKRLQAKGRELVEKINK-GETMEAAAQEVGVNLQE 531 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 + R + D ++ +F+ PV K G S VFKVT + V Sbjct: 532 AQDLAR-NQAKDMLTADVVNLIFATPVG--KAGTAAAGDSRAVFKVTAATVPAFVADSPS 588 Query: 591 ISYLTQMMNKDLLDSV----IAYLKSQYSVTVHDNLIQRYLDGE 630 +TQ L D V I+ ++ V V ++R + GE Sbjct: 589 DKQITQSFQASLADDVLSQYISEVQKNAGVKVDPAALRRAIGGE 632 >gi|46201422|ref|ZP_00055089.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 623 Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 159/635 (25%), Positives = 291/635 (45%), Gaps = 24/635 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++ R AS+TW+ ++ +L + F+ WG D + G S + +G + + + + Sbjct: 1 MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGHTSMSATEVMGEF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K+E+ + G + E AR +G+ + +D+L++ +D+ +GL A + +A Sbjct: 61 KREVERLQPLFGGKLTPEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G +F D+F SRLAR G E ++ + R +V G+ L + Sbjct: 121 SNPAFKGPTGQFERDIFRSRLARVGHTEDSFMKAERTNMVRNQMVETVAAGISAPQALTN 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + V+ + P A P A L +++ + APEY+ ++ +L Sbjct: 181 PLLAWREERRVAETFVIRDESTPLPAAPDAASLDAYYKDNLSRFMAPEYRALTVLLLRPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I+I + ++ Y++ E++ +PE RTV Q+VF A +A + GK +A Sbjct: 241 DVANAIDIDEEMVRETYQQRIEEFSTPERRTVSQIVFDESSAAAKATDMVTGGKDLAAVA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + I LG K +P+ LA+++F L PV + G+ + V+ ++P Sbjct: 301 KALNTDI--IELGIVEKNDLPE-GLAEAVFKLRAGATGQPV-KTALGWHVVKVTQVQPGR 356 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF EVK + MR KA++ + E R+E+ L G +++E ++R + ++ + VD Sbjct: 357 TRSFDEVKVQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTMKIAAVDA 416 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKD----DPLSKDHTVALPDGSYMWVQIKESIPARD 476 G+ GK VA +P +Q L F D PL++ +P+ Y +++ Sbjct: 417 QGRGANGKPVADLPKSDQFLDVAFHTDQNTESPLTE-----VPNNGYFLLRVDGVTAPAP 471 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L ++ DV W+ + E+ KA +L + K G++ + ++ GA L T+ R Sbjct: 472 RPLADIKADVVATWQAERRQEQARDKALKLA-DRIKAGESASQVAQSAGAKLETSKPFIR 530 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGL------SYVVFKVTNSKVGPVQEKDKF 590 E I+++F V P++ G S + F + N+ Q + Sbjct: 531 EPGEGSSLPPTIIAELFKAQPGGVATAPVQGGTVVARLNSVIAFDI-NANPALTQAARQR 589 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +S Q + D+ D IA L + V V + R Sbjct: 590 VS---QAVATDIADQYIAALNASIGVKVDRPQLTR 621 >gi|182678431|ref|YP_001832577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634314|gb|ACB95088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica subsp. indica ATCC 9039] Length = 640 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 156/635 (24%), Positives = 306/635 (48%), Gaps = 22/635 (3%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 MLE +R A+R W+ + + + + + F+IWG+ D +F G++T+ VG ++ ++ Sbjct: 1 MLEAMRVATRGWIGRSLMTLVMGLIILSFIIWGVGD-MFRNLGANTLAKVGDTEITTQAY 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L + ++ + E AR +GLD++IL L+ ATL+Q + +GL + Sbjct: 60 REAYSTILQRLQRQARRAITHEEARMLGLDRQILARLIGEATLNQEADKLGLALADSEIA 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 IA+ LF G + F F + L G+ EK ++ ++L R + V G+ Sbjct: 120 RIIAKDELFKGANGAFDRQRFEALLRDNGMTEKTFVREQHELLLRHMITDAVVTGLSVPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++L+ F E R VD +L V IA P+ L+++F Y E +++ + Sbjct: 180 IMLEMIHAFQTEARDVDTFLLPASSVGEIAAPTEDELSKYFADRAQAYATQERRKLLILS 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D I+ +++Q Y+ K + FS PE R +EQ+ FP+ A +A Q L +G+ Sbjct: 240 LDPTTLAATQTIAPEDVQKLYDSVKAERFSVPEKRQIEQISFPDLATAGKARQRLDQGEN 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F L +Q S D LG+ ++ + D +A++ F+L +G + I +FG + + Sbjct: 300 FEALLADQHISAKDADLGTLARSDLIDQKIAEAAFAL-PEGAVSQPIQDAFGAKLLRIVK 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I P+ F V+ + ++ KA +++ + ++E+ A G ++ E+++ + + + Sbjct: 359 IIPASVQPFASVEAGLKQELATAKARQEITGLHDKIEDLRASGKNLSEVAQSLGLKTQLI 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD G++ +G +A +P LL F D + D T+ P G ++W +++ AR Sbjct: 419 ESVDAHGQNAQGAPIADLPNGPALLKAAFASDVGVDND-TLTTPQGGFVWFEVQGVDKAR 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG-ASLLTTNQI 534 R LEE ++V+ W+ +T +++ A +L+ E GK+ D+ ++ G + + Sbjct: 478 RRTLEEARSEVEAAWRQDETNRKLALAAAELI-EQIDGGKSIADVARDHGNLEVRHVEGV 536 Query: 535 NRMD------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 R D K + ++Q+F+ V V +G ++F+V ++KV P Sbjct: 537 TRADVQPTGNTPGKGLPPNVVTQIFNVGVHGVGSAADASG--RLIFQVQDAKVPPFDPAA 594 Query: 589 KFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVH 619 ++ + + + +D+L +A L+ + V+ Sbjct: 595 PALTAIAKEADGGIKEDVLAQYVAKLQKDFGTKVN 629 >gi|300022969|ref|YP_003755580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] gi|299524790|gb|ADJ23259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] Length = 628 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/513 (26%), Positives = 263/513 (51%), Gaps = 15/513 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++T VAK+ +L V F IWG++D +F G V VG ++ F S+ Sbjct: 1 MLDAMRRGAQTPVAKLLFGLLCVSFAIWGVAD-VFQGWGRGFVAKVGHTEISAEEFRRSY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + EL IS++ +++E+ + GLD+++L +++GA ++ + +GL + I Sbjct: 60 QNELDRISRQSNQRLSAEQGHAFGLDRQVLAQMIAGAAIEAHADQLGLAISDKTLAEGIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D KF+ F L + G++E+ +++ K R +V + G LLD Sbjct: 120 ADPNFQ-TDGKFNRQGFEGLLQQIGMSEQGFLNLRRKDELRGAIVSALIKGQTVPKPLLD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + E R ++++ ++ V +A+P A L + +E K Y PEY+++ ++ Sbjct: 179 EIHAYNQEKRVLEWVKIDPAAV-TVAEPDEATLKKRYEDDKAKYMTPEYRKVQVLMLTPD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299 + +K I I++DE+ YE +K+ + +PE R V+Q+ F ++ A+ A ++L+ G K + Sbjct: 238 DLKKSITITDDEIAKAYEADKDSFNTPEQRRVQQIAFKDRATAETALKALRDGTKSLADV 297 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A+E G +D+ LG +K+ + D +AD FSL +K ++ VI G F V+ V+ I+P Sbjct: 298 AKETGAKDTDVDLGLITKKSLIDPKVADVAFSL-EKDKYSDVIDGRFATVVVRVTQIEPG 356 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T + +VK+ + +++ K ++ +E+ G ++ E++ + ++ ++P D Sbjct: 357 TTKTLADVKEQVRDKLANDKVHGNLQSKRDDVEDARLAGKTLKEVADQLQLTYKEIPATD 416 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G GK V ++ R F D D + L + Y WV + + + + Sbjct: 417 VTGLGPDGKPVLETADIRKITARAFAPD--TGDDSAIDLTNDGYAWVNVLSTDAPKQKAY 474 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 +EV VK+D+ +SS+ ++L+ E +K Sbjct: 475 DEVKDAVKQDY--------MSSEHHRLLDELAK 499 >gi|288958078|ref|YP_003448419.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510] gi|288910386|dbj|BAI71875.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510] Length = 626 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 158/637 (24%), Positives = 303/637 (47%), Gaps = 26/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + +WV KI V+L + F IWG+ D +F S +TV VG+ ++ + + Sbjct: 1 MLQFIRNFAGSWVVKILFVLLILSFGIWGIGD-VFRSSTPTTVAEVGKVEIGQQALDQEF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + +G + +++A+ GL ++ L +L+ D D+G+ V IA Sbjct: 60 RRQMERLRPMLGGNLTTDQAKRFGLLEQSLQSLIQRTLFDLAATDMGIAVGPEVVRLRIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + KF ++F S L + E Y+ + +R V G G+ P L+ Sbjct: 120 DEPAFRNQQGKFDPNIFRSVLRNNQLTEDGYVAMIQRETARQLVAGAVSAGLAPPQPLVQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 RF E R + + L N + + P +A + Q +E ++ + APEY+ ++ Sbjct: 180 DLYRFRGEKRVAEVVTLPNASIGDVGAPDDAAIKQAYEDHQVRFTAPEYRALTVARLSPD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K I+I + +L+ YE+ ++ +PE RTV+ +V ++ +A ++ K K + A Sbjct: 240 ALAKDIKIDDAQLRKAYEERANEFGAPEKRTVQMVVVDDEAKAKRIAEA-AKAKGLAEAA 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +E G + +SL + K +P++ D+ F+L + G + I + G+ + V+ + P+ Sbjct: 299 KETG--VEPVSLDNIGKADLPEIG--DAAFAL-EPGKPSDAIKSALGWHVMAVTGVTPAS 353 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF++V+ +A +M+ +A + V R+E+ LA G S++E+++ + +V + +D Sbjct: 354 TKSFEDVRDQLAAEMKKEQALDSVFSIANRVEDQLASGASLEEVAQAQGLVLTKVAAIDS 413 Query: 421 AGKDVKGKEVAA-IPYKEQLLFRVFGKDDPLSKDHTVALPD---GSYMWVQIKESIPARD 476 GK GK+ A +P + LL F L T L + GS++ V++ IPA Sbjct: 414 TGKAPDGKDAAPDLPALKALLPNAF----QLKAGATSNLTEGEGGSFIAVRVDSVIPAAV 469 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN--FRDIGKNLGASLLTTNQI 534 R L +V V DW+ + + + KA ++ K+G +D+ GAS T Sbjct: 470 RPLADVRDQVIADWQQEQRNDRAAKKAEEIATRL-KQGAEAAAQDVATQAGASFAMTAPF 528 Query: 535 NRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 R + D ++++F+ P E++ + + V+ ++ + D ++ Sbjct: 529 TRDAQTVQGLPGDMVAKLFTAKPNEVISG---NSADAQVIARLKEIIPADPKAADADLAA 585 Query: 594 ----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + Q M DL+ L+ +Y V +H I ++ Sbjct: 586 VRASVEQGMEGDLMAEFTNALRDKYPVRIHRQRIDQF 622 >gi|193084249|gb|ACF09911.1| peptidyl-prolyl cis-trans isomerase ppiD [uncultured marine group III euryarchaeote KM3-28-E8] Length = 631 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 157/635 (24%), Positives = 304/635 (47%), Gaps = 13/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +R RTW K L +L + F IWG+ D +TVV VG ++ F ++ Sbjct: 1 MLEFLRNGVRTWYFKALLGLLVLSFAIWGVGDIFRPGLSGNTVVKVGNIEIGSQQFTSAL 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S+ +G E+AR + + +++++ LV+ A + +G+ + I Sbjct: 61 QRQMQNLSRTLGSNFTLEQARGLQVPERVVEGLVTEALHESEANALGIAVGKKALVQRIR 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ +F V+ LA G +E++++ + LSR V+G + S +L + Sbjct: 121 SEPGFRNQEGQFDRSVYEQTLAINGFSEEQFVSRLRQELSRAQVLGSLTSEVPVSEVLTN 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + E R YI + + + I P +A L ++++ + + APEY+ +Y+ Sbjct: 181 RLYSWNAEKRVAAYIKIQHDAIANIEKPDDAALQEYYKGNESLFTAPEYRSATYVHLTGK 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + E I++S+ ++Q Y++N + + PE RTV+Q++F ++EA L +GK F +A Sbjct: 241 DVESDIDVSDADIQKLYDQNIDAFKVPERRTVQQMIFSTEEEAKTGAAHLAEGKTFAAVA 300 Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++ + D + LG +K ++PD +LA+++F+L+ G TP + G FG+ + V+ IK Sbjct: 301 KDLLRQDEDATNILGDVTKIHLPD-TLAEAVFNLS-DGQVTPPLEGPFGWYVMRVTAIKA 358 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T EV+ DI Q+ ++ E + + L++ L G S++E +R+ +V+ + V Sbjct: 359 PKTQQLLEVRIDIRAQLVQERSGEALYKLSNDLDDALGGGASLEEAARQVGVVAKKVTKV 418 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D K + +P + L +F D + V L Y+ ++ A+ + Sbjct: 419 DRGSNGSDEKPMNDLPPGPEFLTTLFNTPDG-QESELVDLGVNGYLILRNTGIQAAKVKP 477 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM- 537 LE V K WK + ++ + + +LE K G+ I K++ + T+ NR Sbjct: 478 LESVRNRAIKFWKAEQRRKQTEENSKR-ILERIKGGEPLEVISKSIDVPIETSPPFNRHG 536 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFIS-YLT 595 + +++F V P + G + V K + +KVG K ++ L Sbjct: 537 EGAANNLPRSLAAELFGVKVGGASSAPSDRGYTIGVLKEIVKAKVGANSADVKALAEQLA 596 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVH----DNLIQRY 626 Q + +DL L+ ++V + DNL+ ++ Sbjct: 597 QRIGRDLEIQYNNALRQHHNVEIDQRALDNLLSQF 631 >gi|144898531|emb|CAM75395.1| peptidyl-prolyl cis-trans isomerse D [Magnetospirillum gryphiswaldense MSR-1] Length = 645 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 151/632 (23%), Positives = 296/632 (46%), Gaps = 17/632 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R AS++WV K+ +L + FL WG+ D A + G ++VG + + + Sbjct: 22 MLDSFRNASKSWVIKVLFGLLVLSFLAWGVEDVARNGLFGRGPAITVGDRDFAAAEVMVE 81 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +K+++ + + G ++ AR +GL + +D++V+ +D+ + L V ++ Sbjct: 82 FKRDMDQLQPQFGGKLSMADARKLGLMDRTIDSIVTRTLVDEAARGLSLATSDDEVIAKV 141 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A P F + +F D+ L+R G +E+E++ + RT + GG+ L Sbjct: 142 AAEPSFRNQLGQFDRDLLRQALSRAGWSEQEFMRQEKDNILRTQLAESLSGGLTAPQALT 201 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R+ E R + + + +P A P A L Q+++ +++ APE++ I+ +L Sbjct: 202 EPLIRWKRETRQAETVSIKASSMPQPAAPDAATLEQYYKANANSFMAPEFRAITALLLRT 261 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + ++++ L Y+ ++++ SPE RTV Q+V + AD+A + +K GK + Sbjct: 262 TDAGRGLTVTDEMLTEAYKAREDEFHSPERRTVSQIVLADDASADKAAEMVKAGKDIKVI 321 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A++ G ++ I LG K +PD LA +F + +G T + + G+ +A V+ I Sbjct: 322 AKDLGVNV--IELGLVEKGDLPD-ELAGPVFDVG-QGALTQPVKSALGWHVAKVTAITAE 377 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T S EV++ +A + K+ +++ E ++E+ L G +++E + R ++ + + +D Sbjct: 378 KTRSLAEVREMLAADILREKSMDRITELTNQVEDSLGGGATLEETATRFQLPLVRIAAMD 437 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDRK 478 G+ GK V +P E L F + + + DG+ +++ +SI P + + Sbjct: 438 AKGRAPNGKPVTDLPGGESFLDVAFHTEQ--GTESQLTEMDGNGLFLLRVDSITPPQPKV 495 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 L EV T+ W+ AE+ + A L + E K G+ + ++L T+ Sbjct: 496 LSEVRTEAVAAWQ----AEQRQAAAKALADKIAERVKAGEPLAKVAQSLSLKAETSAPFT 551 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQEKDKFISYL 594 R E ++ +F G V+ P +G KV + + I Sbjct: 552 REGGEASKMPPAIVTALFDGKPGRVEAAPSRDGWMVAQLDKVMAFDAKADAKAAEQIRKR 611 Query: 595 TQ-MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 T ++ DL+D IA L + V V + + R Sbjct: 612 TNSAVSVDLIDQYIAALNVEMGVKVDRSQLSR 643 >gi|209963457|ref|YP_002296372.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum centenum SW] gi|209956923|gb|ACI97559.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum centenum SW] Length = 622 Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 148/646 (22%), Positives = 275/646 (42%), Gaps = 54/646 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + +W+AKI ++L F +WG+ D F+ V VG ++ + Sbjct: 1 MLQAIRSTAGSWIAKILFILLIASFAVWGIGD--FTRGLGRHVAEVGDVQITPQELDQEF 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ + + +G + +E+AR+ GL ++ L +V + +D GL V EI Sbjct: 59 RDEVTRLRRVMGADLTAEQARAFGLLERTLQQMVQRTLVSLAGQDKGLMPSDAMVADEIR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLL 179 R P+FH + +F D+ + L + G+ E+ ++ ++R ++G + +G + P+ L Sbjct: 119 RVPVFHNQLGQFDPDLMRALLRQNGMTEQGLVEQVRADMARGQLLGSVSIGAILPTTLA- 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + RF E R D I + +P A P +VL Q+ + Y APEY+ ++ Sbjct: 178 ETLFRFRNEKRVADLITVPATAMPEPAAPDASVLAQYHQDRAVRYTAPEYRSLTVAKLTA 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 I +S+ +++ Y ++ +PE R V Q V P++ A ++ G Q Sbjct: 238 EAIAGDITVSDADIEQAYSARASEFVAPERRAVVQAVLPDEAAAKSVADAVAGGASLEQA 297 Query: 300 AEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A+ + I LG ++ + +P+ L + +F L++ G + + + G+ + V I P Sbjct: 298 AKA--AAAEAIDLGEVTRDQLLPE--LVEPVFGLSQ-GAISAPVESTLGWHVLTVRGITP 352 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 EV+ + +R +A +++ E ++++ LA G +++E ++R + + V Sbjct: 353 GHERPLAEVRDQVVADLRKERALDRLYEVANQMDDDLAGGATLEEAAQRAGAEIVRIEAV 412 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----------SYMWVQ 467 D G G V +P Q+L F ALP G Y V+ Sbjct: 413 DSRGTTPAGTPVQDVPALPQVLETAF------------ALPSGETGHMTETDAQGYFAVR 460 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + PA + LE + V DW + A +KA++L + + R GA+ Sbjct: 461 VDGVQPAALKPLETIRERVLADWTAEQRAAAARTKADELAAKLREGADPARLAATVPGAT 520 Query: 528 LLTTNQINRMDN---------ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 + R E F G V G + P+ L ++ V + Sbjct: 521 HARSEPFTRRPEAAALPASLVEELFGAQPGGVAVADG-----REGPVAARLVEIIPAVPD 575 Query: 579 SKVGPVQEKDKFISYLTQ-MMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + K I T+ + DL+ + L+ Q+ V+V+ LI Sbjct: 576 AA------GVKVIRDTTEATLADDLVTQYVGGLQRQFPVSVNRGLI 615 >gi|114327489|ref|YP_744646.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis CGDNIH1] gi|114315663|gb|ABI61723.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis CGDNIH1] Length = 656 Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 155/656 (23%), Positives = 287/656 (43%), Gaps = 44/656 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML R + W ++ +L + F+ WG SD +G +V+V ++ +F ++ Sbjct: 14 MLATFRNSLNAWPVRLLFGLLVLAFVGWGFSDVWTQATGGGALVTVNGSRIEPQAFQATY 73 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++EL + Q++G V + + V ++ L +V+ LD +GL + Sbjct: 74 QRELNRVRQQMGGGRQDVPPDIRKMVA--QQALQQMVTETVLDDLTRKMGLTTPDADIRQ 131 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P F +F F + L G+ E Y+ + + ++ ++ G + Sbjct: 132 ATYAMPAFKNDQGQFDQARFQAVLNSVGLTEDSYVAYLRRTITERQLLDAIRAGASAPKI 191 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+ + E RS D I + PA P++ L +++ + Y APEY+RI I+ Sbjct: 192 LVAPLFAWQKEQRSGDMIEVPVSAAPAPPQPTDKQLERYWANHPARYTAPEYRRIKAIVL 251 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---K 294 K IE+ +L+A Y+ N + +PE R V ++ P++ +A + G K Sbjct: 252 TPETVAKAIEVPEKDLRAWYDANGIHFDTPEKRDVSIVLVPDEAKAKALAEQWDNGADWK 311 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 K LA G S + L +K+ +P L F K +H S G+ + V Sbjct: 312 KISALANSDGGSA--VELTGITKQQLPVPDLMPLAFETTKTDQIAGPVHDSLGWHVVRVG 369 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-ISRREKIVSI 413 I+P+ SF+E+K++I + +A E++ + L+E A G+++D+ + + + +I Sbjct: 370 KIQPATHRSFEEMKEEIKQILSTQRAMEQIYDRSSHLDEAFAQGSTLDDKLPDADAVAAI 429 Query: 414 DLPLVDFAGKDVKGKEVAAIP----YKEQLLFRVFG--KDD-----PLSKDHTVALPDG- 461 L D G +G A IP K+ L+ F K D P++ P G Sbjct: 430 SGQL-DMQGNTREGTP-APIPGSDQLKQALITAAFSMKKGDAPHLVPVTPQSQPGTPAGP 487 Query: 462 -SYMWVQIKESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGKNF 517 +Y VQ+++ IP R EV +V DW K + EE +++A L L+ EGK+ Sbjct: 488 TTYFAVQVEDIIPGALRPFPEVKAEVTADWIQDKRHHSQEEAATRA-MLALQ---EGKSV 543 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 D G +L + R E D +F+ +++ + + + ++T Sbjct: 544 ADAVTLSGGTLKQIPLLTR-KGETGDVSADTRRALFA--LKLNDSTMVNTPDGFAIIRLT 600 Query: 578 NSKVGPVQEKDKFISY------LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 ++ EKD ++ +TQ + +DL ++ +A L+S+ V++ L+QR + Sbjct: 601 --RILSPTEKDDPAAFSQAREQITQGLAEDLENTFLASLRSKADARVNNALLQRIM 654 >gi|126461486|ref|YP_001042600.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides ATCC 17029] gi|126103150|gb|ABN75828.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides ATCC 17029] Length = 621 Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 131/514 (25%), Positives = 244/514 (47%), Gaps = 36/514 (7%) Query: 25 FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + WGL + F V+ G STV SVG + + ++ + +QE+ + +I Sbjct: 19 LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 79 VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + L + ++E E+ + ++R+ + G GG +++ + E RS Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSFGL 198 Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + + ++ +A P++A L W+E + ++ APE KRI+Y + + L Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEAAL 258 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI LG Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S++ + AD++F+L + G PV G + V+ + + F+EV+ D+ Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETPFEEVRDDLLT 375 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKEV 430 + + A + +++++ LA G ++++++ KI ++D P +D D+ G E Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLD---SDIAGYEA 432 Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 FR D L KD T+ L DG + +++ E +P + + EEV DV Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVPPKLKPFEEVRDDVA 480 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + + ++++A ++ + ++EG + G Sbjct: 481 EAARKDALTKALAARATEIA-KAAEEGTDLGSFG 513 >gi|312113155|ref|YP_004010751.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] gi|311218284|gb|ADP69652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] Length = 633 Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 145/558 (25%), Positives = 258/558 (46%), Gaps = 22/558 (3%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 +V +VG + F ++++ L +SQ+ G ++ A++ GL ++L L+ A LD Sbjct: 37 SVATVGSASISPEDFRRAYQRVLENVSQQAGRRISPAEAQAFGLPNRVLQGLIQDAALDL 96 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 +++G+ V I +F K FS D + L G + Y L R Sbjct: 97 EAKELGVGLSEEGVRRGITSLDVFQDK-GVFSADKYHRFLQNIGYTAPFFEQEYRGDLIR 155 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + G+F G LL+ ++ E R++ Y L A+ P+ A L ++E K Sbjct: 156 RQLRGVFDGSGVVPKALLEAYNKYGNEQRTLAYFTLTPEAAGAVPAPTEAELQAFYEDRK 215 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + PE +++S + K + I +++L+AEY Y PE R +E + F + Sbjct: 216 PQFMTPELRKVSALAISPQTVAKSLTIPDEDLKAEYAAKASVYSVPERRKLEIVPFKTRA 275 Query: 282 EADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLA---KKG 336 +AD A+ LK G + + +A++ G S +I G S++ + D + D+I A +KG Sbjct: 276 DADAAYAKLKSGARDLLGVAKDAGFSQPEIDAGVVSRKELADKFGINDAIVKEAFSTEKG 335 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + G VI V + P SF EVK I + T+A + + K EE + Sbjct: 336 WTSRPVDGPVSTVIMRVLEVVPGQERSFAEVKDQIRADLAKTRAQSEFQRLIKAFEEDRS 395 Query: 397 LGTSMDEISRREKIVSIDLPL----VDFAGKDVKGKE--VAAIPYKEQLLFRVFGKDDPL 450 G + + +++ ++LPL +D + KD GK V+ +P QL F K D Sbjct: 396 TGIPLADSAKK-----LNLPLEEVTIDRSAKDADGKPVTVSVVPAA-QLADAAF-KSDVG 448 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 ++ + L G Y W ++ + + R + LEEV +V+ W+ + + ++S+A LV Sbjct: 449 VENEAIRLQGGGYAWFEVADVVKPRQKPLEEVKGEVEAAWRADQVRDRLASRARDLVARL 508 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570 K G+ + K++GA++ T+ + R E+ I+Q F+ P ENG S Sbjct: 509 DK-GETIDAVAKSVGATVKTSQPLKRNGKEDG-VPPAAIAQAFTLPEGGAGSAGSENGTS 566 Query: 571 YVVFKVTN-SKVGPVQEK 587 VF++ ++ GP+ E+ Sbjct: 567 RAVFQLAKITQPGPLAEE 584 >gi|221638406|ref|YP_002524668.1| YbaU [Rhodobacter sphaeroides KD131] gi|221159187|gb|ACM00167.1| YbaU [Rhodobacter sphaeroides KD131] Length = 621 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 132/514 (25%), Positives = 243/514 (47%), Gaps = 36/514 (7%) Query: 25 FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + WGL + F V+ G STV SVG + + ++ + +QE+ + +I Sbjct: 19 LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 79 VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + L + ++E E+ + ++R+ + G GG ++D + E RS Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVDALHAYIAERRSFGL 198 Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + + ++ +A P++A L W+E + ++ APE KRI+Y + + L Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPTDEAAL 258 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI LG Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S++ + AD++F+L + G PV G + V+ + + SF+EV+ D+ Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETSFEEVRDDLLT 375 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKEV 430 + + A + +++++ LA G ++++++ KI ++D P +D D+ G E Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLD---SDISGYEA 432 Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 FR D L KD T+ L DG + +++ E + + + EEV DV Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVA 480 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + ++++A ++ + ++EG + G Sbjct: 481 EAAHKDALTKALAARATEIA-KAAEEGTDLGSFG 513 >gi|163793237|ref|ZP_02187213.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium BAL199] gi|159181883|gb|EDP66395.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium BAL199] Length = 626 Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 134/535 (25%), Positives = 247/535 (46%), Gaps = 29/535 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + KI V+L V F IWG+ D F +SVG + F++ Sbjct: 1 MLQFIRSKVTSIFVKILFVMLIVSFAIWGIGDVFFGNPAGKVAISVG-DETRFTT--QEV 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E ++IG + E+A +G+ ++++N+V+ + + L RV E Sbjct: 58 AGEFETARRRIGVPLTVEQAIQLGMLDQVMNNMVTEGLMIAATRSLDLSVGTDRV-AEFV 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 RS F + +F + + LA G +E+E+I + +R ++ +D Sbjct: 117 RS-RFTDQTGQFDRARYQTTLANNGWSEEEFILRLRQDFARRQLIDALTAADAAPEAAVD 175 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + E R + + + VP P +A L +FE K Y PEY+ I++ Sbjct: 176 RVFAYRQERRIAEVVTIPAAAVPEPTAPDDAALNSYFEASKSGYEEPEYRSIAWAQVSPA 235 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K ++I +++A Y++ ++ PE R V+Q++F + + A + G+ F+ +A Sbjct: 236 AVAKTLDIPEGDVRAAYDERADQLAKPERREVQQILFETEDASKAAHARIAGGEDFVAVA 295 Query: 301 EE-QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 ++ G + + LG+ +++ +P AD++F+LA+ PV G FG+ + V +I+P Sbjct: 296 KDTTGADEAALDLGALARDGLP-TGTADAVFALAQNAVSEPVKSG-FGWHLFRVRSIQPG 353 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 TV+++E K I +++ +A + V E +LE+ LA G +++E ++ S++LP++ Sbjct: 354 TTVTYEEAKGRIRDELAHDRALDVVYETANKLEDALAGGATLEEAAK-----SLELPVLR 408 Query: 420 FAGKDVKGKEVAAIPYKEQLL------FRVFGKDDPLSKDHTVALP---DGSYMWVQIKE 470 G G A+ E+ + F D P KD L DG + +++ E Sbjct: 409 ITGLSKTG----ALKSGEKAVDLPGGRFLELAFDTP--KDQQSGLGEGLDGQFFVLRVDE 462 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 R L+EV V DWK+ + E +A+ L E + G + D+ G Sbjct: 463 ITAPRVPSLDEVRDRVLADWKSERRMEIAEERADSLA-EKVRGGGSLADLAAADG 516 >gi|77462552|ref|YP_352056.1| peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1] gi|4185543|gb|AAD09115.1| YbaU [Rhodobacter sphaeroides] gi|77386970|gb|ABA78155.1| possible peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1] Length = 621 Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 128/514 (24%), Positives = 242/514 (47%), Gaps = 36/514 (7%) Query: 25 FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + WGL + F V+ G STV SVG + + ++ + +QE+ + +I Sbjct: 19 LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 79 VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + L + ++E E+ + ++R+ + G GG +++ + E RS Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSFGL 198 Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + + ++ +A P++A L W+E + ++ APE KRI+Y + + L Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEAAL 258 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI LG Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S++ + AD++F+L + G PV G + V+ + + F+EV+ D+ Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETPFEEVRDDLLT 375 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA---GKDVKGKEV 430 + + A + +++++ LA G ++++++ +++ VD+A D+ G E Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGE---AGMEIATVDYAPGLDSDIAGYEA 432 Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 FR D L KD T+ L DG + +++ E + + + EEV DV Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVA 480 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + + ++++A ++ + ++EG + G Sbjct: 481 EAARKDALTKALAARATEIA-KAAEEGTDLGSFG 513 >gi|260433616|ref|ZP_05787587.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417444|gb|EEX10703.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 613 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 147/604 (24%), Positives = 275/604 (45%), Gaps = 36/604 (5%) Query: 36 SVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 ++SG+ TV VG + + ++ ++E+ + + G + +AR +GLD++ L LV Sbjct: 31 NLSGTVRTVAQVGDEVITVDAYARELQREIRAVEAQTGQPLQMSQARDLGLDQRALSRLV 90 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + A LD + +G+ + EI R F G D F + + +L + G+ E E+ + Sbjct: 91 ALAALDNEVAQLGISVGDENLQKEILRIQAFQGADGSFDREAYRFQLEQIGMTEAEFEED 150 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213 K +RT V G + G+ +L D + RS L+ + A + +P++A + Sbjct: 151 LRKETARTIVQGAIMNGIEMPAVLTDTLADYVQARRSFTVATLSADALDAPVPEPTDADI 210 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 ++E D + P K+I+Y + + +E+ D L+ Y++ KE+Y PE R VE Sbjct: 211 QAFYEANTDRFTLPRTKKITYAVLSPAMLQDTVEVDEDALRRLYDQRKEQYQQPERRLVE 270 Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +LV+P++ EA EA L+ G F QL + LSD+ LG +++ + + AD++F+ Sbjct: 271 RLVYPSEAEATEAKAQLEVGGVDFEQLVRARELELSDVDLGDVTRDDLGEA--ADAVFA- 327 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 A+ GD + +FG + V+ V+F E + ++ ++ +A ++ + Sbjct: 328 AEVGDVVGPLPSAFGPALFRVNGTLAEHNVTFDEAEPELREELAAERARRVIESQAEEYN 387 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + LA G +++E++ ++L +D+ + +++AA V D P Sbjct: 388 DMLAGGATLEELAAE---TEMELGQIDWTAQ--TDEDIAAYDAFRSAAQAVGEGDFP--- 439 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 L DGS +++ E +P R LE V + WK + + + KAN +V + Sbjct: 440 -EIGFLEDGSVFALRLDEELPPRPEPLESARDRVIEAWKQEEIGKALLEKANTVVTSLAV 498 Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572 EG +F G N + R + G D ++QVF ++ P + Sbjct: 499 EG-DF----AATGLPFRVENALTRTAFLDDVPG-DFMTQVFEMEPGELRVIPGQGA---- 548 Query: 573 VFKVTNSKVGPVQE-------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 F V +V P E KD + L Q + +++ D+ + +++ T L QR Sbjct: 549 AFIVRLDEVLPPAETDEQRQMKDAVAAQLNQALAQNIFDAYVRDAQTRARPT----LDQR 604 Query: 626 YLDG 629 L+ Sbjct: 605 ALNA 608 >gi|332557437|ref|ZP_08411759.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides WS8N] gi|332275149|gb|EGJ20464.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides WS8N] Length = 621 Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 129/514 (25%), Positives = 243/514 (47%), Gaps = 36/514 (7%) Query: 25 FLIWGLSDAL------FSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + WGL + F V+ G STV SVG + + ++ + +QE+ + +I Sbjct: 19 LVFWGLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQQEMRALGAQINQP 78 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 79 VTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQFDR 138 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + L + ++E E+ + ++R+ + G GG +++ + E RS Sbjct: 139 ETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSFGL 198 Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + + ++ +A P++A L W+E + ++ APE KRI+Y + + L Sbjct: 199 LRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEAAL 258 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI LG Sbjct: 259 RRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADIDLG 318 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S++ + AD++F+L + G PV G + V+ + + F+EV+ D+ Sbjct: 319 DASRDALGGA--ADAVFALTEPGIAGPV-ETDLGPALFRVNGVIAAHETPFEEVRDDLLT 375 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKEV 430 + + A + +++++ LA G ++++++ KI ++D P +D D+ G E Sbjct: 376 EYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLD---SDIAGYEA 432 Query: 431 AAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 FR D L KD T+ L DG + +++ E + + + +EV DV Sbjct: 433 ----------FRTAA--DKLQKDDFPETILLNDGGLLAMRLDEVVAPQLKPFDEVRDDVA 480 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + + ++++A ++ + ++EG + G Sbjct: 481 EAARKDALTKALAARATEIA-KAAEEGTDLGSFG 513 >gi|84500963|ref|ZP_00999198.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597] gi|84391030|gb|EAQ03448.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597] Length = 612 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 128/523 (24%), Positives = 244/523 (46%), Gaps = 17/523 (3%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V SVG Q++ + + + EL + + G ++ E+A+++G+D+++L L++ A D Sbjct: 36 VGSVGDQEITVQEYGRTLQSELRAMEAQTGEAISLEQAQAMGIDRRVLSRLLTNAAFDLE 95 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + +GL + + P F G D +FS D + + R G+ E+ D K +R Sbjct: 96 ADRVGLSIGDETLVRLVRDIPAFRGVDGQFSRDGYEFAIERSGLTVGEFEDGIRKETARA 155 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYK 221 + G G + LD ++ E R V + + + + + +PS L +++ Sbjct: 156 LLQGAVFSGRALPDAYLDTVLNYFAERRRVTWARVESSQLDGESFEPSEEDLRALYDELI 215 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +++ PE KRI+Y ++EI D L+ EYE ++Y PE R VE+L++ +Q Sbjct: 216 EDFTLPERKRITYAWLTPEMILDQVEIDEDLLRQEYEARSDQYNRPERRLVERLIYADQG 275 Query: 282 EADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 A EA L+ G+ F L EE+G +LSDI +G S+ + + D +F+ A+ G+ Sbjct: 276 RAAEAADRLENGEADFETLVEERGLTLSDIDMGDVSRADLG--AAGDPVFA-AESGEIVG 332 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + G V+ I + +F+E D+ ++ +A +V + + E+ LA G + Sbjct: 333 PVETDLGPAFFRVNGILSAEETTFEEALPDLRQELAFDRARRRVANEAEPAEDMLAGGAT 392 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 ++E++ + L VD+A +G +AA + R+ D + + L D Sbjct: 393 LEELAAE---TDMRLGSVDWAEGQSEG--IAAYEGFDAAAARL----DETAYPEVMRLTD 443 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G +++ E +P E V V+ W+T +T + + ++A + + + +E +F + Sbjct: 444 GGIFAMRLDEVLPPEPAPFENVRERVRNIWETRQTMQRLRTQAGEHI-DRLRESADFDSL 502 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 G + T Q + M F + + Q+ G + MV F Sbjct: 503 GLEVQTEEALTRQGSVMGAPEAFV--ETVFQMEEGQIAMVDGF 543 >gi|146279132|ref|YP_001169291.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC 17025] gi|145557373|gb|ABP71986.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC 17025] Length = 655 Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 126/482 (26%), Positives = 226/482 (46%), Gaps = 37/482 (7%) Query: 25 FLIWGLSDALFSVS-----------GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 + WGL AL +V G STV SVG + + + + + +QE+ + +I Sbjct: 53 IVFWGLV-ALMAVGLGGFGVTNFGGGLSTVGSVGDRDITTADYARALQQEMRALGAQINQ 111 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 V E AR+ GLD+++ LV+ A L + +GL RV EI S FHG +F Sbjct: 112 PVTMEMARAFGLDQQVRRRLVTQAALSNEADRVGLSVGDARVAEEITGSDSFHGPSGQFD 171 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + L + ++E E+ + + +SR+ + G GG L+D + E RS Sbjct: 172 RETYRLVLRQNNLSESEFENGLREDISRSLLQGAVGGGFVAPAALVDTLHAYIAERRSFS 231 Query: 194 YIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + ++ A + +P+ L W+E + ++ APE KRI+Y E + + + Sbjct: 232 LLRVQEANLGAPLPEPTEDELQAWYEAHPADFTAPERKRITYAALLPQEVAPTLPVDEEA 291 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ Y++ ++ PE R VE+L F + A EA + +G F L E+G L DI + Sbjct: 292 LRRLYDQRLGEFVQPERRLVERLAFSTPEAAAEARARIDEGTPFETLVSERGLELIDIDM 351 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G +++ + + A+++F+L + G PV G G + V+ + + F+ V+ D+ Sbjct: 352 GDVTRDEL--GAAAEAVFALTEPGIAGPVETG-LGPALFRVNGVIAAQETPFEAVRDDLL 408 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID-LPLVDFAGKDVKGKE 429 + + A+ + ++++ LA G +++E+ KI ++D P +D D+ G E Sbjct: 409 AEYQQDAAARAISGRRDQIDDLLAAGATLEELGTEAGMKIATVDYAPGLD---SDIAGYE 465 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486 FR D L D TV L DG + +++ E +P + + EEV +V Sbjct: 466 A----------FRTAA--DALQPDDFPETVQLNDGGLLAMRLDEVVPPQLKPFEEVRDEV 513 Query: 487 KK 488 + Sbjct: 514 AE 515 >gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040] gi|99037265|gb|ABF63877.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040] Length = 611 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 134/516 (25%), Positives = 240/516 (46%), Gaps = 23/516 (4%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQE 63 ++K S+T+V I + +LFV +G +VSG++ T+ +VG V + + +QE Sbjct: 1 MKKLSKTFV-WILMGLLFVGLAGFGA----INVSGTTRTLATVGDATVSVDDYARALQQE 55 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 I + G + + ++G+D+ +L LV+ A LD + +IGL + EI R Sbjct: 56 QRAIQAQSGQSIPLSQLIAMGVDRGVLSGLVATAALDNELTEIGLSVGDEVLLEEITRIS 115 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 F G D FS D + L G++E E+ +RT + G GG R +L + Sbjct: 116 AFQGSDGSFSRDNYRFALDNAGLSEAEFEADMRSETARTLLQGAITGGTRMPAVLGETLT 175 Query: 184 RFYFENRSVDYIVLNNRHVP--AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + RS Y+ L +VP AIA P+ L ++E + +++ PE K I+Y+ Sbjct: 176 NYIGARRSFSYVRLAEANVPLTAIA-PTEDALKAYYETHIEDFTLPETKVITYVALRPDA 234 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLA 300 ++E+ L+ YE+ ++ PE R VEQLVFP++ A A L G F L Sbjct: 235 LVDQVEVDETALRGLYEERDAEFNVPERRLVEQLVFPDEDAAQTAKAELDVGGTTFETLV 294 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ SLSDI +G + I D+ A A G + FG + V+ + + Sbjct: 295 ADRELSLSDIDMGDVA---IGDLGAAGEAVFAADVGAVVGPLPSDFGPALYRVNGVLEAN 351 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF+E + ++ + +A ++ + L++ LA G ++++++ E + L +D+ Sbjct: 352 FTSFEEALPVLREELALDRARRLIESRAEGLDDALAGGATLEDLAEEEN--GVVLGQLDW 409 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 ++AA V +D P L DGS +++ E +P R E Sbjct: 410 TANTT--DDIAAYDTFRNAAEAVTTEDFP----EVGYLEDGSLFALRLDEVLPPRPEPFE 463 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + T V + ++ + A+ ++++A Q ++ + EG N Sbjct: 464 DARTAVSEAYEGDRIAKALAAQAEQ--IKTATEGNN 497 >gi|83593225|ref|YP_426977.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170] gi|83576139|gb|ABC22690.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170] Length = 632 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 134/577 (23%), Positives = 248/577 (42%), Gaps = 39/577 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ S++W+AK L +L + F +WG++D + G ++VG Q N + Sbjct: 1 MLDALRRGSKSWLAKSLLGLLVLSFGVWGVADYMVRGGGPKPAITVGGQSFGAGYVRNQF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++LG + ++ G +++E+A ++GL + + +V GA LD+ +GL A + I Sbjct: 61 SEDLGRLRRQ-GIELDAEQAIAMGLLGQTVQTIVQGAVLDESGRRLGLVASDDALRSAIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 PLF G D +F D LA + E YID + + R +V V + ++D Sbjct: 120 NDPLFKGADGRFDRDRLSRILAANNLTEAGYIDLRRRDMIREALVEPVVSAVGVPGPIVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E R + + +PA P+ L + ++ D + APEY+ +L Sbjct: 180 VLAAHASERRVAQVLTVAKAALPAPTTKPTEEALEKVRQENLDRFTAPEYRTAKALLLTR 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 I ++++ + YE + +++ P R V Q +F ++++AD A ++ + Sbjct: 240 DAVAGSITVADEAIAQYYEAHGDEFVQPASRRVTQALFSSREQADSALVLIRSSSASLDE 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A + I +G+ + +P + + + G G+ + V+ P Sbjct: 300 ASRKITGSGAIDMGNVTDSSLP--APLPATIAAQDVGVVGEPAQSPLGWHLFLVTAATPE 357 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDY----KRLEEFLALGTSMDEISRREKIVSIDL 415 T EV A Q+R T AS++ + ++E+ LA G +DE++ + L Sbjct: 358 TTKPLAEV----APQIRKTLASDQAVDSLYALSTQVEDLLAGGAGIDEVA-----TQVGL 408 Query: 416 PL----VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD--GSYMWVQIK 469 PL VD G G +P L +FG L + + D G + +++ Sbjct: 409 PLLAFSVDSQGNSQDGTPAKGLPSDGAFLKTLFG----LGEGEVSPMIDYEGGFFIQRLE 464 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL---VLEYSKEGKNFRDIGKNLGA 526 P R L+ V +V W+ +E ++ A +L +L +K G +F D+ A Sbjct: 465 TITPRAPRPLDAVRAEVVALWQD----QEQTATAGRLAEGLLSRAKAGASFEDLAAAEPA 520 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 S L+T D + DG ++ P +V+ Sbjct: 521 SRLSTTPPVTRDGRS-----DGAAEADPLPGALVQAM 552 >gi|296535271|ref|ZP_06897478.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296264392|gb|EFH10810.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 507 Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 127/505 (25%), Positives = 233/505 (46%), Gaps = 29/505 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R+ + TW AKI +L + F +WG+ D + ++V VGR + + Sbjct: 1 MLTALRRLAGTWFAKILFALLVLSFAVWGIEDIVRQFGSDTSVARVGRDAIEVPEAQAAA 60 Query: 61 KQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV--- 115 ++E+G + +++G F + E + L ++ ++ LV Q +GL V Sbjct: 61 RREIGRVQRQLGGSFEITPEMGEA--LTRQAVEGLVMERVQRQEARHLGLAVPEAAVRDY 118 Query: 116 -WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 WG P F G D +F+ F S L ++E E++ L R +VG G Sbjct: 119 VWG----IPAFQGPDGRFNRIAFDSFLRNNQLSEGEFLTLLRADLERQQMVGAVRAGAAG 174 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L + E R + + L P A P A L ++ E D + APEY+R++ Sbjct: 175 PDALTRPLLAWEREQRLAEIVRLPFSAAPEPAAPEEAQLRRFHENNADRFSAPEYRRVTL 234 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + ++ + +EL+A YE +++ Y PE R+++Q + P++ +A+ + ++G Sbjct: 235 AVLSPETVMGDVQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGA 294 Query: 295 KFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F + + + + LG + +P LA++ F+L + G PV FG+ + HV Sbjct: 295 DFAAITQAAEAAGGQATELGESDRAGLPLPELAEAAFTLPQGGVSEPV-QSPFGWHVVHV 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + I F+ V+ ++ Q++ +A++ E ++E+ LA G S+ E++ R + + Sbjct: 354 TAIAAGEDRGFEAVRPEVEAQVKRERAADLAYERANQVEDALAAGGSLAELAPRFGL-GV 412 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQ----LLFRVF----GKDDPLSKDHTVALPDGSYMW 465 +VD AG+ +G + AA+P Q L VF G+ L++ AL Sbjct: 413 AQAVVDAAGRTPEGAQ-AALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTAL-----FA 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDW 490 +++E IPA R E V V+ + Sbjct: 467 FELQEVIPAALRPFETVEPQVRAAY 491 >gi|83942589|ref|ZP_00955050.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36] gi|83846682|gb|EAP84558.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36] Length = 614 Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 122/489 (24%), Positives = 235/489 (48%), Gaps = 16/489 (3%) Query: 36 SVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 +++GS+ TV VG + + + +Q++ I + G ++ + A+++GLD+ +L LV Sbjct: 31 NLNGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLV 90 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 LD +++GL + + P F G D F + + L + G+NE E+ Sbjct: 91 RLRALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQS 150 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213 + RT + GG+ + D + E RS + L + A + D ++A L Sbjct: 151 LREEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQL 210 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 ++++ D + P K ISYI + ++E++++ELQA Y+ ++Y PE R VE Sbjct: 211 QAYYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVE 270 Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +LVF +Q+ AD+A +L+ G F L ++G SLSD+ LG S++ + + D++F+ Sbjct: 271 RLVFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDAVFA- 327 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 AK GD + + G + V+ + PS +F+E + + + +A+ V+ + L+ Sbjct: 328 AKVGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLD 387 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + LA G ++++I+ K+ L +++ + +AA + R+ D P Sbjct: 388 DQLAGGATLEQIAEESKMT---LSTIEWTQD--SSESIAAYAGFREAATRLTEGDFP--- 439 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 L DGS +++ + R + DV + W+ + + KA L E + Sbjct: 440 -QIQQLDDGSVFAMRLDGTKEERPNPFDAARADVAEAWQNEQLITALRVKAETLQAELA- 497 Query: 513 EGKNFRDIG 521 +G +F ++G Sbjct: 498 DGADFAELG 506 >gi|83953830|ref|ZP_00962551.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1] gi|83841775|gb|EAP80944.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1] Length = 614 Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 121/489 (24%), Positives = 235/489 (48%), Gaps = 16/489 (3%) Query: 36 SVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 +++GS+ TV VG + + + +Q++ I + G ++ + A+++GLD+ +L LV Sbjct: 31 NLNGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLV 90 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 LD +++GL + + P F G D F + + L + G+NE E+ Sbjct: 91 RLRALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQS 150 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213 + RT + GG+ + D + E RS + L + A + D ++A L Sbjct: 151 LREEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQL 210 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 ++++ D + P K ISYI + ++E++++ELQA Y+ ++Y PE R VE Sbjct: 211 QAYYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVE 270 Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +LVF +Q+ AD+A +L+ G F L ++G SLSD+ LG S++ + + D +F+ Sbjct: 271 RLVFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDDVFA- 327 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 A+ GD + + G + V+ + PS +F+E + + + +A+ V+ + L+ Sbjct: 328 AEVGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLD 387 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + LA G ++++I+ K+ L +++ + +AA + R+ D P Sbjct: 388 DQLAGGATLEQIAEESKMT---LSTIEWTQD--SSESIAAYAGFREAATRLTEGDFP--- 439 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 L DGS +++ + R + DV + W+ + + +KA L E + Sbjct: 440 -QIQQLDDGSVFAMRLDGTKEERPNPFDAARADVSEAWQNEQLITALRAKAETLQAELA- 497 Query: 513 EGKNFRDIG 521 +G +F ++G Sbjct: 498 DGADFAELG 506 >gi|259418802|ref|ZP_05742719.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp. TrichCH4B] gi|259345024|gb|EEW56878.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp. TrichCH4B] Length = 611 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 126/505 (24%), Positives = 245/505 (48%), Gaps = 19/505 (3%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQE 63 ++ S+T+V I + +LFV +G +VSG++ T+ +VG V + + +QE Sbjct: 1 MKNLSKTFV-WILMGLLFVGLAGFGA----INVSGTTRTLATVGDATVSVDDYARALQQE 55 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 I + G + + S+G+D+ +L LV+ A LD + ++GL + EI + Sbjct: 56 QRAIQAQSGRSIPLSQLISMGVDRGVLSGLVASAALDNELGELGLSVGDEVLLKEITQIS 115 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 F G D FS D + L G++E ++ + +RT + G GG R +L + Sbjct: 116 AFQGSDGNFSRDNYRFALDNAGLSEADFEEDMRSETARTLLQGAITGGTRMPAVLGETLT 175 Query: 184 RFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + RS Y+ L+ V A +P+ L ++E + +++ PE K I+Y+ Sbjct: 176 DYIGARRSFAYVRLSENDVILTAVEPTEDELKSFYETHIEDFTLPETKVITYVALRPDAL 235 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAE 301 ++E+ L+A YE+ ++ PE R VEQLVFPN+ A A L G F L E Sbjct: 236 VDEVEVDETALRALYEERDAEFNVPERRLVEQLVFPNEDAAATAKAQLDVGGTTFETLVE 295 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 E+ +LSDI +G + + + + D++F+ A+ GD + FG + V+ + + Sbjct: 296 ERELTLSDIDMGDVAIDTLG--TAGDAVFA-AEVGDVVGPLPSEFGPALYRVNGVLEANF 352 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 SF++ + ++ + +A ++ + +++ LA G +++++++ E + L +D+ Sbjct: 353 TSFEDALPTLREELALDRARRVIETRSEGIDDALAGGATLEDLAKEEN--GMVLGQLDWT 410 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 ++AA + +D P + D+ L DGS +++ E + R + E+ Sbjct: 411 ADTT--DDIAAYDTFRNAAEAITIEDFP-AVDY---LEDGSLFALRLDEVLAPRPQPFED 464 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQL 506 T V + +K + A+ ++ +A+Q+ Sbjct: 465 ARTAVTEAFKGDRIAKALAEQADQI 489 >gi|254511419|ref|ZP_05123486.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221535130|gb|EEE38118.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 613 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/482 (23%), Positives = 224/482 (46%), Gaps = 15/482 (3%) Query: 36 SVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 S++G+ TV VG + V ++ ++E+ + + G + +A +GLD+ L L+ Sbjct: 31 SLTGTVRTVAQVGDESVSVDAYFRELQREIRAVEAQTGQAMQIAQAHDLGLDQLALSRLI 90 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + A LD + +G+ + EI + P F G + F + + +L + G+ + E+ Sbjct: 91 ALAALDNEVAQLGISIGDENLQNEIVQIPAFQGVNGTFDREAYRFQLEQVGMTDAEFESD 150 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213 K +RT V G +GG+ L + + RS L+ + + P++A + Sbjct: 151 LRKESARTIVQGAVIGGVEMPLALTEALANYVLARRSFTLATLSAEALETPVPQPTDAQI 210 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 ++++ D + P KR++Y + +EI D L+ Y++ +Y PE R VE Sbjct: 211 QAFYDENTDRFTLPRTKRLTYAILSPEMLLDAVEIDEDALRRLYDQRAGQYLQPERRLVE 270 Query: 274 QLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +L +P+++ A EA L+ G F QL ++ LSD+ LG ++E + D AD++F+ Sbjct: 271 RLPYPSEEAATEALAQLEVGGADFEQLVRDRQLELSDVDLGDVTREDLGDA--ADTVFA- 327 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 A D + FG + ++ VSF+E + ++ ++ +A ++ + + Sbjct: 328 AGIDDVVGPLPTVFGPALFRINGTLAENNVSFEEARPELREELAADRARRLIEAQAEDIN 387 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + LA G ++++++ ++L +D+ + G VAA V D P Sbjct: 388 DMLAGGATLEDLA---ADTEMELGTIDWTQQ--SGDGVAAYDGFRAAAVAVQEGDFP--- 439 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 L DGS +++ + + R L+ V + W V+TA + ++A+ ++ + + Sbjct: 440 -EIGFLEDGSIFALRLNQVLEPRPEPLDSARARVAEAWMQVETARALQNQADAILTQLAT 498 Query: 513 EG 514 +G Sbjct: 499 DG 500 >gi|94497171|ref|ZP_01303743.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58] gi|94423276|gb|EAT08305.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58] Length = 650 Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 137/535 (25%), Positives = 237/535 (44%), Gaps = 34/535 (6%) Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 G ++ D LV TL + +D G+ V +IA+ P F FS+D F + LAR Sbjct: 90 GGGAQVFDQLVQSLTLRAYADDQGIHISKRLVDAQIAQIPAFQDAAGNFSNDNFRALLAR 149 Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202 E ++E+ D ++ + + ++ G RPS NL+L A E R + Sbjct: 150 ERLSEQALRDDISREILQRQLLAPIGIGARPSENLVLPYAS-LLLEARQGQVAA-----I 203 Query: 203 PAIA-----DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 PA+A DP++A L +++K D + PE +RI Y + D + S+ E+ A Y Sbjct: 204 PAVAFLDDKDPTDAQLADFYKKNSDRFTIPEQRRIRYAVVDAERFAQASMPSDAEISAYY 263 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317 +NK Y + E R+VEQLV P + A +K GK Q A QG LS +L + S+ Sbjct: 264 NQNKANYAASENRSVEQLVLPTEAGAKAIAAQVKAGKSLPQAA--QGAGLSVSTLDAQSR 321 Query: 318 EYIPDVS---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + + +AD++F+ A++G+ + G G+++ V+ ++ V+ +I Sbjct: 322 GQLTSATSKAVADAVFA-ARQGELIGPVRGPLGWLLLRVTAVQDKPARPLAAVRDEIVKT 380 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 +R+ K + + + +LE+ +A G + DE+++ + P + GK VK A Sbjct: 381 LRVQKEKQLLGDFTAKLEDQIADGGTFDEVAKDNGLKLETTPPLLATGKQVKDMAYVAPA 440 Query: 435 YKEQLLFRVFGKDDPLSKDHTVAL----PDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + LL F +S D L PD Y + + I A L EV + V+ + Sbjct: 441 DVQPLLSPAF----TMSADDDAQLVPITPDKRYALIAPGQIIAAAPPPLAEVKSLVQAQY 496 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL-----LTTNQINRMDNENKFFG 545 K ++ + A Q+ + +K G D G L L + + M E + Sbjct: 497 KLNAGNQKAKALAEQIRAKVAK-GTKLADAISQAGVKLPAPQTLGGRRADIMRAEQRPPA 555 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 +S +F+ VK PI G Y V ++T + G + + ++ + M + Sbjct: 556 E--VSILFAMAENSVKTLPISEGRGYFVVQLTKIERGDAKGNPQLLAQVRDQMGE 608 >gi|126737880|ref|ZP_01753610.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6] gi|126721273|gb|EBA17977.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6] Length = 613 Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 146/608 (24%), Positives = 266/608 (43%), Gaps = 37/608 (6%) Query: 13 VAKIFLVVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQK 70 ++K F+ +L + LI GL+ + SGS S+V VG ++V + ++E + Q+ Sbjct: 8 LSKTFVWIL-MGMLIVGLAGFGAVNFSGSVSSVALVGDEEVSVEEYFRELQREQRSLQQQ 66 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G VV + + GLD+ +L L+S A LD + +G+ + E+ + P F G Sbjct: 67 TGQVVTLAQMTAFGLDRAVLGRLISLAALDNEVNSLGISIGDENLLDELTQIPSFQGPSG 126 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 F + + L + E E+ K +RT V G + + L D ++ R Sbjct: 127 NFDREAYRFALQNANLTEAEFEADLRKEAARTLVQGAIISNAEMPSTLADTLTKYIGARR 186 Query: 191 SVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 S Y++L I P +A L ++E + +R PE K+I+Y IE+ Sbjct: 187 SFSYVLLEPAQFSLIQIVPDDAELKSFYEANPEAFRLPETKQITYARLSPDMILDGIEVD 246 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS 308 + L+A YE+ K++Y PE R VE+LVF +Q AD A L+ G F +L +G L Sbjct: 247 AEALKALYEERKDQYQVPERRLVERLVFSDQAAADRATADLQAGTVTFEELVGNRGLDLQ 306 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 DI +G +KE D+ A A G + + G I ++ + SF+ + Sbjct: 307 DIDMGDVTKE---DLGAAAEGVFAAAVGSVSSPLPSDLGPAIFRINGQLDARITSFEAAE 363 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 ++ ++ +A +++ + +++ LA G +++E+ D+ + + G Sbjct: 364 AELRQELAADRARRVIEQQAESIDDILAGGATLEELKDE-----ADMEVATLGWTGIPGD 418 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVA-LPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 +AA Y+ FR L V L DGS +++ E +P R + V Sbjct: 419 GIAA--YEG---FRTAADAVTLEDFPAVEFLGDGSIFALRLDEVLPERPEPFDAAKEKVL 473 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 W + A+ ++++A +++ G D+ L T ++R D Sbjct: 474 AAWDADRQAKAITARAGEILTATKNAGAFPDDLEVATEEGLTRTAYLDRTP-------AD 526 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-------KDKFISYLTQMMNK 600 ++Q+F+ VK E+ S VV V+ S++ P +E ++ F + L Q ++ Sbjct: 527 MMNQIFTMTPGEVKIITGED--STVV--VSLSEILPAEEGEEMALMREAFTAQLDQALSN 582 Query: 601 DLLDSVIA 608 L + ++ Sbjct: 583 ALFQAYVS 590 >gi|294677876|ref|YP_003578491.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB 1003] gi|294476696|gb|ADE86084.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB 1003] Length = 609 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/413 (25%), Positives = 190/413 (46%), Gaps = 14/413 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML K+ WV L+ + V + G FS G S + +VG ++ + ++ Sbjct: 1 MLRSSGKSVTVWV----LLAMIV-LGLGGYQVGNFSNRGQS-IGAVGESEITARDYADAL 54 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +QE+ ++ +IG + R++GLD+ + L + A L + + L V +I Sbjct: 55 RQEINAVAAQIGHPPSMSEVRAMGLDQVVQAQLFNTAALSEQARRLELSVGDAEVSRQIR 114 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F G F + + L REG+ E E+ ++R+ + G GG+ LLD Sbjct: 115 SARPFQGATGSFDRETYREVLRREGLTETEFETRLRADIARSILQGAVAGGVPAPAALLD 174 Query: 181 QAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + E R V + I +PA P A L +++ + + PE + ISY+ Sbjct: 175 GYVGYLGETRDVAFAEIPATGISLPA---PDAAALKAYYDAHLAEFTRPETREISYVWLT 231 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFI 297 + +I I +L+A Y++ K +Y PE R + +LVFP Q EA+ + G Sbjct: 232 PDMLKDEIAIDEAQLRATYDERKAEYVQPERRKLAKLVFPTQAEAEAGMAKIAAGTASLA 291 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 LAE +G S +DI LG S++ I + +++F+ G P G + + Sbjct: 292 DLAEARGLSAADIDLGDVSQDEIGGAA-GEAVFARTTPGVIGP-YETDLGPALFDFQAVT 349 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 PS T +F+E + DIA ++ + KA + + LE+ LA G +++++ + K+ Sbjct: 350 PSETTTFEEARGDIAAELAMEKARRMIADMTTDLEDRLASGATLEDMVKETKM 402 >gi|119384865|ref|YP_915921.1| putative peptidyl-prolyl cis-trans isomerse [Paracoccus denitrificans PD1222] gi|119374632|gb|ABL70225.1| putative peptidyl-prolyl cis-trans isomerase [Paracoccus denitrificans PD1222] Length = 652 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/372 (24%), Positives = 183/372 (49%), Gaps = 7/372 (1%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 G++ + SVG ++ + + + E+ S + G +++ A+++G+D+ L L + A Sbjct: 31 GGTADIGSVGGVEISAQDYARTLRAEMQEFSARTGRQISAAEAKTIGVDQAALARLYTAA 90 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 L+ +G+ V G+I F G + +F ++ L REG+ E E+ +H + Sbjct: 91 ALEAEANRLGVSVGDQAVAGQITGIAAFRGLNGQFDRAIYADALRREGMREAEF-EHDLR 149 Query: 158 M-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215 M ++R + + G+ ++ Q + + E R + + L +P +A P L Sbjct: 150 MDMARLILQDAALAGVSAPQPVVAQTQGWLLETRDIHWRELTAEDLPTPVATPDETTLQA 209 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W + D + APE ++I+Y+ E ++E+ L+ Y+ E++ PE R VE+L Sbjct: 210 WHKANADRFTAPEIRQITYVWLTPEMLEGEVEVDEQALRDLYQDRIEEFQQPERRMVERL 269 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 VFP A+EA + G+ F QLA E+G SL+DI LG ++ + S +++F+L + Sbjct: 270 VFPTMAAAEEAKARIDSGEVTFEQLAAERGLSLADIDLGEVARADLG--SAGEAVFALEE 327 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G P G + ++ I + F++ + D+ + + +A +++E + Sbjct: 328 PGVAGPA-SSDLGPALFSMNAILEPLDIPFEQARDDLRLEAAVDRARRQIEERAGEFADL 386 Query: 395 LALGTSMDEISR 406 LA G +++++++ Sbjct: 387 LAGGAALEDMAQ 398 >gi|258542318|ref|YP_003187751.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-01] gi|256633396|dbj|BAH99371.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-01] gi|256636455|dbj|BAI02424.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-03] gi|256639508|dbj|BAI05470.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-07] gi|256642564|dbj|BAI08519.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-22] gi|256645619|dbj|BAI11567.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-26] gi|256648672|dbj|BAI14613.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-32] gi|256651725|dbj|BAI17659.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654716|dbj|BAI20643.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-12] Length = 639 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 129/559 (23%), Positives = 242/559 (43%), Gaps = 36/559 (6%) Query: 1 MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58 M+ +R+ +W+ ++ +V+F+ F+ WG+ D + + + VV+ VG+Q+V Sbjct: 1 MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSADDLAT 60 Query: 59 SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + EL I++++G S+ A + +IL L+ A L + + + V Sbjct: 61 ALQSELPTIARQMGVTDPSQIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVVVPDSAVR 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 E+ P F G + +F F +L G+ E+ ++D L+ ++ S+ Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLRDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L + + + R VD++ + P P +AVL +++ + +R PE + ++ Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFDAQPTPKAPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 I + +++ Y++ K +Y PE R ++ + +Q +A + K G + Sbjct: 241 LSPQTVADSITLGEADIKRIYDEQKSRYDVPETRDIQLITLQDQAQATAIANAWKVGGNW 300 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 Q + K + + + + IP +L +IF A +G + + G+ + V+ I Sbjct: 301 -QAIQNSAKDAAAVEMPNARPSTIPSATLRQAIFQ-APEGQVSGPLKTESGWAVFRVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 T +++ KKDI +Q R A E ++L++ LA G +D I DL Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GKGLDAI-------PADLG 410 Query: 417 LVDFAGK-DVKG----KEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 V AG D +G KE A +P +E ++ ++F + P ++ V PD S V+ Sbjct: 411 AVAAAGTLDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVE 469 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + PA R E+ DV W+ AE AN+ + N KN A Sbjct: 470 VDTATPAAPRTFEQAHADVLAAWQ----AEARKHAANE-------QATNLYLATKNKQA- 517 Query: 528 LLTTNQINRMDNENKFFGY 546 L TTN + F Y Sbjct: 518 LATTNAPGAQMTRDAAFSY 536 >gi|255262468|ref|ZP_05341810.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp. R2A62] gi|255104803|gb|EET47477.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp. R2A62] Length = 622 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 116/513 (22%), Positives = 232/513 (45%), Gaps = 23/513 (4%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W+ L V + F GLS + S+ SVG +++ ++ N QE+ + Sbjct: 12 WIVIGLLFVGLIGFGATGLSGNIRSIG------SVGDKELDLQTYANQLNQEIRAFEAQT 65 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G V+ A+++GLD+ +L ++ LD +GL RV +I P F G + Sbjct: 66 GSSVSFPEAQTIGLDRAVLARVIGVRALDNEAAQVGLSVGDARVRAQILEIPSFRGPSGE 125 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F D + L G+ E + + ++RT + G + G+ S+ + + E+R Sbjct: 126 FDRDAYRFSLGNNGLTEATFETQLREEMARTVLQGAVLTGVEASDTYAETLSGYIGESRD 185 Query: 192 VDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 ++ L+ + + ++ L +++ ++ P KR++Y+ +EI Sbjct: 186 FTWVRLSQADLETELTAATDEQLLDYYQANPIDFTEPAKKRLTYVSLTPEMIVDTVEIDE 245 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD 309 LQ Y + + PE R VE+LVF +Q++AD A L +G+ F L EE+G +LSD Sbjct: 246 TALQDLYNTRLDTFVQPERRLVERLVFSSQEDADAAAARLTEGEITFDALVEERGLALSD 305 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 I LG ++ + D D++F+ A+ GD + G + ++ + + ++++ Sbjct: 306 IDLGDLAQPELGDA--GDAVFA-AQTGDVVGPLPTDLGPALFRMNAVLSAQETTYEQALP 362 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD-FAGKDVKGK 428 ++ ++ +A + + + +++ L G +++E++ ++V L +D FAG + + Sbjct: 363 ELREELATERARRIIDDASREIDDLLVGGATLEEVAAETEMV---LGQIDWFAGSE---E 416 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 +A V D P DG +++ E+I A LE++ V Sbjct: 417 IIAGYDNFRAAANAVTSNDFP----DIERFEDGGLFALRLDETIDAELVPLEDIRGKVVA 472 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 W+T +T+ ++ +A L+ + EG+ +G Sbjct: 473 GWETQETSRLLNEQAQGLI-DQVNEGRTLVSLG 504 >gi|254486655|ref|ZP_05099860.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp. GAI101] gi|214043524|gb|EEB84162.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp. GAI101] Length = 614 Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 147/616 (23%), Positives = 282/616 (45%), Gaps = 36/616 (5%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQEL 64 KA VAK + +L + LI GL + +G+ S++ +VG + + + +Q++ Sbjct: 2 KAKGNSVAKTAVWIL-MGMLILGLGGFGAVNFNGNVSSIGTVGDKDISVDQYARELQQQI 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 I + G ++ ++A+++GLD+ +L LV LD ++G+ + I P Sbjct: 61 RAIEGQTGETLSFQQAQAIGLDRAVLQRLVRLRALDNETAEMGISIGDENLRERIIDIPS 120 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G D F + + L + G++E E+ + +R+ + G GG+ ++ Sbjct: 121 FQGIDGNFDREGYRFALQQAGLSEAEFETSLREEAARSLLQGAISGGVTMPDVYAQTLVN 180 Query: 185 FYFENRSVDYIVL--NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 F E RS + L ++ P +A P++A L +++ +N+ P K I+YI+ + Sbjct: 181 FVGEKRSFTWAALTEDDLQTP-LAAPTDADLQAFYDANPENFMLPASKSITYIILTPQDV 239 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAE 301 ++EI+ DEL+ Y+ + PE R VE+LVFPN++ A+ A +L+ G F L + Sbjct: 240 LDEVEITQDELRKAYDDRAADFIQPERRLVERLVFPNEEAANMAAAALEVSGTTFDALVQ 299 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 ++G +L DI +G S+ + + +++F+ A+ GD + + G + V+ I PS Sbjct: 300 DRGLTLEDIDMGDVSRLELG--AAGEAVFA-AEAGDVVGPLPSNLGPALFRVNGILPSLN 356 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 +F+E + + +A+ V+ + L++ LA G ++++++ K+ L ++ Sbjct: 357 TTFEEASPALQQDLAGDRAARLVEVRAQELDDQLAGGATLEQLAEETKMT---LGTTEWT 413 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 +G +AA + D P L DGS +++ + P R E+ Sbjct: 414 ADSDQG--IAAYESFRAAAAALTDGDFP----KIDQLEDGSVFALRLDGTKPERPNPFED 467 Query: 482 VLTDVKKDWKTVKTAEEVSSKAN--QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 V W + + ++++A Q LE G +F D+G L T+Q N + Sbjct: 468 ARASVAAAWTADQLLQALTAQAETAQSALEG---GSDFADLG------LTPTDQQN-LTR 517 Query: 540 ENKFFGY-DGI-SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-FISYLTQ 596 E G DG+ ++VF ++ I S + +V + E+ + + LT Sbjct: 518 EAVISGAPDGLMTEVFDAAPGDIRT--IAGTDSVAILRVDSITAAEESEQTRQLLDQLTT 575 Query: 597 MMNKDLLDSVIAYLKS 612 +N+ L V A S Sbjct: 576 QLNQQLSQDVFALYSS 591 >gi|329113481|ref|ZP_08242262.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001] gi|326697306|gb|EGE48966.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001] Length = 639 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 125/556 (22%), Positives = 241/556 (43%), Gaps = 29/556 (5%) Query: 1 MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58 M+ +R+ +W+ ++ +V+F+ F+ WG+ D + + + VV+ VG+Q+V Sbjct: 1 MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSSDDLAT 60 Query: 59 SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + EL I++++G S A + +IL L+ A L + + + V Sbjct: 61 ALQSELPTIARQMGVSDPSHIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVAVPDSAVR 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 E+ P F G + +F F +L G+ E+ ++D L+ ++ S+ Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLHDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L + + + R VD++ + P P +AVL +++ + +R PE + ++ Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFAAQPTPKTPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 I + +++ Y++ K +Y PE R ++ + +Q +A + K G + Sbjct: 241 LSPQTVADSITMDEADIKRIYDEQKSRYNVPETRDIQLITLQDQAQATAIANAWKVGGNW 300 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 Q + K + + + + IP +L ++F A +G + + G+ + V+ I Sbjct: 301 -QAIQNSAKDAAAVEMPNARPSTIPSTTLRQAVFH-APEGQVSDPLKTEGGWAVFRVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 T +++ KKDI +Q R A E ++L++ LA G +D I DL Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GQGLDAI-------PADLG 410 Query: 417 LVDFAGK-DVKG----KEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 V AG D +G KE A +P +E ++ ++F + P ++ V PD S V+ Sbjct: 411 AVAAAGTLDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVE 469 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK-NLGA 526 + + PA R + TDV W+ + +A L L KN + +G N Sbjct: 470 VDTATPAAPRTFAQAQTDVLAAWQDEARKHAANEQATTLYL----AAKNKQALGTVNASG 525 Query: 527 SLLTTNQINRMDNENK 542 + LT + NK Sbjct: 526 AQLTRDAAFSFAKPNK 541 >gi|260577282|ref|ZP_05845256.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2] gi|259020526|gb|EEW23848.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2] Length = 625 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/459 (24%), Positives = 204/459 (44%), Gaps = 17/459 (3%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 SG S + +VG +K+ + + + +QEL S ++G V+ + G+D+++ L+ A Sbjct: 42 SGVSEIGAVGDRKIDVNQYARALQQELAAFSAQVGSTVSLQEGIERGIDRQVRQQLLIAA 101 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 LD + IGL RV E+A F G F + + + L + E ++ + Sbjct: 102 ALDNEADRIGLSVGDARVARELAGMAAFQGAGGSFDRETYRATLKNNSLTEADFEGNLRD 161 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQW 216 LSR+ + G GG+ L D F E R + L + A+ P+ A L Sbjct: 162 DLSRSLLQGAVSGGIVAPAALTDTLYSFIAERRGFSLLRLTEADLKTAVPAPTEADLQAH 221 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + + PE +RI+Y + + L+A Y+ +++ PE R VE+LV Sbjct: 222 YTANLPAFTKPEARRITYAALFPATLATTMPVDEAALKALYDSRIDEFVQPEKRLVERLV 281 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +P + +A A L G F L E+G +L I +G K + + +++F+L + G Sbjct: 282 YPTEADATAARAKLDAGTPFETLVAERGLTLEAIDMGDVGKADLG--AAGEAVFALTEPG 339 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 P+ G + ++ I + VSF++ + + M+ A + + + +++ LA Sbjct: 340 VVGPLAT-DLGPALLRMNAILAAQNVSFEDARDTLVPDMQQDAARRAIGDKLEAIDDALA 398 Query: 397 LGTSMDEISRR--EKIVSID-LPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPLSK 452 G S++++ + + SID +P V G+D + P ++E V G Sbjct: 399 GGASLEDLGKEFGMAVASIDFVPEVPAEGEDA----ITGYPAFREAATQAVEGD-----F 449 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 TV L DG + +++ E +PA L++ V W+ Sbjct: 450 AQTVQLDDGGVVALRLDEIVPAAPIPLDQAQEAVTASWR 488 >gi|163746559|ref|ZP_02153917.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus indolifex HEL-45] gi|161380444|gb|EDQ04855.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus indolifex HEL-45] Length = 614 Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 136/570 (23%), Positives = 261/570 (45%), Gaps = 35/570 (6%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 ++ SVG + + + +QE+ I + G ++ RA+ +GLD+ +L +V LD Sbjct: 38 SIGSVGDKSISVDQYARQLQQEIRAIEAQTGESLSFARAQEMGLDRAVLQRIVRNRALDH 97 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 ++G+ + EI F G D F + + L + G++E E+ + +R Sbjct: 98 EAAEMGISIGDATLRDEIVAISAFQGIDGNFDREGYRFALQQSGMSEAEFETSIREESAR 157 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL--NNRHVPAIADPSNAVLTQWFEK 219 + +GG+ + + E RS + L ++ P +A+P+ L +++ Sbjct: 158 GLLQRAVLGGVSMPDTYARTLVDYVAEERSFTWARLSADDLDTP-VAEPTEEELQAYYDA 216 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 D++ P K I+Y + ++E+ +EL+AEY+ +Y PE R VE+LVF N Sbjct: 217 NADDFMLPASKSITYAWLRPEDLLDEVEVPEEELRAEYDARSSEYDQPERRLVERLVFAN 276 Query: 280 QKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 Q+ AD+A +L+ G F L EE+G +L+D+ +G +K + D++FS A+ G Sbjct: 277 QEAADQAAAALEVDGTTFEALVEERGLALADVDMGDVAKSDLD--GAGDAVFS-AESGAI 333 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + S G + V+ I P+ V F+E ++ + + I++A+ V+ + +++ LA G Sbjct: 334 VGPLPSSLGPALFRVNAILPAQNVPFEEAREVLEETLAISRATRAVEARAQEIDDRLAGG 393 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD---HT 455 +++++ + K ++L +D+ G +AA FR LS D Sbjct: 394 ATLEDLGKETK---MNLGTIDWTEDSSDG--IAAYGA-----FREAAAG--LSADAFPQI 441 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 L DG +++ E+ P R + +V+ W+ + E +++KA L + + +G Sbjct: 442 DQLDDGGIFAMRLDETKPERPNPFDAARAEVEAAWRNAQIVEALTAKAENLTADLA-DGG 500 Query: 516 NFRDIG--KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573 +F G LG + ++ + D F + QVF V P G VV Sbjct: 501 DFEAAGLEPQLGEGMTRSSYV---DGTPDTF----MDQVFDLDEGGVAVLPA--GDHVVV 551 Query: 574 FKVTN-SKVGPVQEKDKFISYLTQMMNKDL 602 +V + + G + + L+Q +++ L Sbjct: 552 LRVDSVTAAGENDQTQALMDRLSQQLDQAL 581 >gi|218680686|ref|ZP_03528583.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 894] Length = 194 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 117/194 (60%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ +++L F IWG+S +L + S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGGNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + KF ++F+SRL I + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDY 194 K + E+RS+DY Sbjct: 181 ALKLYGDESRSIDY 194 >gi|119471187|ref|ZP_01613719.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Alteromonadales bacterium TW-7] gi|119445843|gb|EAW27125.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Alteromonadales bacterium TW-7] Length = 633 Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 137/563 (24%), Positives = 247/563 (43%), Gaps = 49/563 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ S+ VAKI L + + F + G+ L G +T V V K+ + F Sbjct: 1 MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL----GQTTEQPVAEVNGVKISQTEFN 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q+ G + ++ + + ++D LV Q ++GL Sbjct: 57 RAYQNERNRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQSQLAAELGLRVSDDT 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F D KF++D ++ + + + ++ + ++R+ +V G Sbjct: 117 VRKTILELPYFQLGD-KFNNDRYLQVIRQMNFQPDTFREYLREDMTRSQLVSAVAGTDFA 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L A + RS+DY+V+N + + S ++ +++ + +PE ++Y Sbjct: 176 LESELKSAIALQQQTRSIDYLVINKESLADNVEVSEQEVSDYYDLNASQFLSPELISVNY 235 Query: 235 ILFDVHEKEKKI---EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----- 286 + K + I ++ ++++A YE+NK +Y PE R V ++ N ++ D A Sbjct: 236 VEL----KAENIVVGSVTEEDVKASYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKAKVD 291 Query: 287 --FQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPV 341 + L++G F +LAE + +G + + + D + D+ FSL KGDF+ V Sbjct: 292 ALYAELQQGADFAELAESSSDDIVSAEMGGDLDWIERDVMDPAFEDAAFSLEAKGDFSEV 351 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + FGY I +++I+P F +VK D+ ++ + +EK+ Y + E A+ Sbjct: 352 VASEFGYHIIKLTDIQPQQVKPFDDVKADLRAEL---ERAEKIDAFYDKQTEMGAIAF-- 406 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAI-----PYKEQLLFRVFGKDDPLS---KD 453 EIS R +D + A DV+ + A+ P + D L Sbjct: 407 -EISDR-----LD-DAAEVAELDVQSTPLLALNALPEPLNTPAVITALTSVDLLEDKVNS 459 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + L D + V+I E PA + L +V +K KT+E KA L E + Sbjct: 460 EVIELGDEHIVIVRINEHQPASTKPLSDVSEQIKTRLVNDKTSELAKDKARSLFAEI-QA 518 Query: 514 GKNFRDIGKNLGASLLTTNQINR 536 GK+ DI G +L +Q+NR Sbjct: 519 GKSLNDIATEQGLTLRQESQLNR 541 >gi|163731980|ref|ZP_02139426.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter litoralis Och 149] gi|161394278|gb|EDQ18601.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter litoralis Och 149] Length = 612 Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 109/482 (22%), Positives = 220/482 (45%), Gaps = 16/482 (3%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 T+ + G + +P + +QE+ + Q+ V+ ++A+ +GLD+ +L LV+ +LD Sbjct: 37 TIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVATRSLDH 96 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 ++GL + I + F G + +F + + L + G++E E+ + ++R Sbjct: 97 ETSELGLSIGDEELRTRILQISAFQGINGEFDREGYRFALEQTGLSEAEFETQLREEVAR 156 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKY 220 T V G +GG+ +D + E RS + +L+ + + P +A+L ++ Sbjct: 157 TIVQGAVLGGIAMPETYVDTLVSYIGEQRSFTWSLLDASDLATPLGAPDDAILRAHYDDN 216 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 D + PE K+I+Y +E+ + L+ Y + ++ PE R VE+L F + Sbjct: 217 IDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAEQSAEFNQPERRLVERLAFLDT 276 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + A +A +L G F L +G +L DI LG S+ ++ A + A G Sbjct: 277 QSAQQAADALTAGDSFDDLVRGRGLALEDIDLGDVSE---AELGAAGAGVFAADVGAVVG 333 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + G + V+ + + F+E + Q+ +AS V + ++ LA G + Sbjct: 334 PFPSTLGPALFRVNAVLAAQETPFEEAIDVLRPQLAADRASRLVAAQAESFDDLLAGGAT 393 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 +++++ +V + +D+ +E+AA P Q V +D P +L D Sbjct: 394 LEDLASETDMV---VAQIDWTAGST--EEIAAYPTFRQAAASVGPRDFP----EIASLDD 444 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK-ANQLVLEYSKEGKNFRD 519 G +++ +P R +E+ ++ W+ +TA+ ++ + A Q+ L + G +F D Sbjct: 445 GGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAGQVGL--LENGSSFAD 502 Query: 520 IG 521 +G Sbjct: 503 LG 504 >gi|254463425|ref|ZP_05076841.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacterales bacterium HTCC2083] gi|206680014|gb|EDZ44501.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacteraceae bacterium HTCC2083] Length = 615 Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 117/522 (22%), Positives = 237/522 (45%), Gaps = 25/522 (4%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W+ L+V F L + SV +VG + + + + +++L IS + Sbjct: 14 WILLALLIVGLAGFGATNLGGNIRSVG------AVGDKTISVELYSRTLQEDLRAISAQA 67 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + A+++G+D++ L +++ LD ++GL ++ +I F G + + Sbjct: 68 GQNIPFSTAQALGVDRQALARVITTRALDHETAELGLSVGDAQLQQQILSMSAFQGINGQ 127 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F + + L G++E E+ + + +RT V G + G + + + E R+ Sbjct: 128 FDREAYRFTLENAGLSEAEFEETLREEAARTLVQGAILSGNTVPDTYANTLVAYIGERRN 187 Query: 192 VDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 L + +A+P+ A L ++++ D Y PE K+I+Y L +E+ Sbjct: 188 ATVARLKAEDLATPVAEPTEAQLQTYYDENIDAYTLPETKQITYALLSPDMIADTVEVDE 247 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSD 309 LQ Y++ + ++ PE R +E+LV+ N A A L+ G F L E++G +L+D Sbjct: 248 AMLQTAYDERESEFNKPERRLIERLVYGNDDSASAAKAQLEAGGTTFETLVEDRGLALAD 307 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 I LG + + + +SIF+ A+ GD + G + ++ I + SF++ + Sbjct: 308 IDLGDLDQGALG--AAGESIFA-AETGDVVGPLQSDLGPALFRINGILAAQETSFEDARA 364 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 + +++ +A V+ +++ LA G +++++++ +V ++ AG + E Sbjct: 365 QLRDELAADRARRVVEAQINDIDDLLAGGATLEDLAKETDMVLGNIDWSSEAGDGIAAYE 424 Query: 430 VAAIPYKEQLLFRVFGKDD-PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 V ++E + DD P L DG +++ E R + L ++ V Sbjct: 425 V----FREGA--QAITVDDFP----KIEVLEDGGIFAMRLDEVHAPRPQPLAKITERVSV 474 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 W+T T E + ++A L+ + + E +F D+ +L A LT Sbjct: 475 GWRTQATLEALRAEAEALLSQITAE-SDFADV--DLEADTLT 513 >gi|85703584|ref|ZP_01034688.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217] gi|85672512|gb|EAQ27369.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217] Length = 604 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 119/527 (22%), Positives = 233/527 (44%), Gaps = 27/527 (5%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV L+ F LS + SV VG ++ +++ + + E+ + + Sbjct: 2 WVLMGLLIAGLAGFGATNLSGTVRSVG------HVGTAEIDLTTYARALQNEIRALEAER 55 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G ++ AR+ G+D +L L++ A L+ + +GL + +I P F G D Sbjct: 56 GSAISLAEARAAGVDTDVLSRLIARAALEHEADRLGLSIGDANLREQIVEIPAFQGLDGS 115 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F + + L + G+NE ++ ++ + T V + G++ LD + E RS Sbjct: 116 FDREAYRFALDQAGLNETQFEENIRAETASTLVQAAALAGLQTPATYLDTMMTYLAERRS 175 Query: 192 VDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + VL+ + + PS L + + ++ PE K+I++ +E+ Sbjct: 176 LAFAVLDRSALQSGLPVPSEEDLQAYHQANLPSFTTPETKKIAFAWITPAMIIDSVEVEE 235 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 L+ Y + + ++ PE R VE+L+F + + A A + +G L E+G +SD+ Sbjct: 236 AALRDAYAEREAEFNLPERRLVERLIFADTEAATRARARIDEGIALEMLVSERGLEMSDV 295 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG ++E + S A+ +FS A+ G+ I S G + V+ I + F+E + Sbjct: 296 DLGDVAREDLG--SAAEPVFS-AEAGEVVGPIDTSLGPALFRVNAILAAQVTPFEEAEPQ 352 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + +Q+ +A ++ +++ LA G ++++++ K +++L +D+ +G + Sbjct: 353 LRDQLAGDRARRVIEAQIDTVDDLLAGGATLEDVA---KETNMELGSIDWHPGLTEG--M 407 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 AA + V D P V L DG +++ R + LE+V V W Sbjct: 408 AAYDSFREAADAVATGDYP----EVVQLADGGIFALRLDGIDEPRVQPLEDVRDAVLNGW 463 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +T T E + ++ + E + G +F D+G LT I+ M Sbjct: 464 RTKATVEALKTQVEPQLAEL-RAGASFADLG-------LTATDISNM 502 >gi|56697010|ref|YP_167372.1| hypothetical protein SPO2145 [Ruegeria pomeroyi DSS-3] gi|56678747|gb|AAV95413.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 614 Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 118/506 (23%), Positives = 227/506 (44%), Gaps = 17/506 (3%) Query: 13 VAKIFLVVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQK 70 ++K F+ +L + LI GL+ ++SG+ TV VG Q V ++ ++E+ I + Sbjct: 8 LSKTFVWIL-MGLLIAGLAGFGAVNLSGTVRTVAQVGEQTVSVDAYARELQREIRGIEAQ 66 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + + R +G+D+ +L LV+ A LD + +G+ + EI + P F G D Sbjct: 67 TGQPLQMSQVRDLGIDQAVLARLVAIAALDNEVAGLGISIGDENLSREIVQIPAFQGVDG 126 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 KF + + L G++E E+ + +RT V G + G+ + D +F R Sbjct: 127 KFDPEGYRYALDNAGLSEAEFEADLRRESARTLVQGAIMEGLVMPDTYADTLAQFVGARR 186 Query: 191 SVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 S ++ + + +A P A + ++ +D + P KR++Y L ++E+ Sbjct: 187 SFTMATVDTGALDSPVAAPDAAQIEAFYADNQDQFMLPRSKRLTYALLTPEMLLDRVELD 246 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLS 308 ++ YE+ + Y PE R VE+LVF +Q A+ A ++ G F L E +G SL+ Sbjct: 247 EGAVRRLYEERESSYQQPERRLVERLVFADQASAESAMAQVEVGGATFELLVEGRGLSLT 306 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 D+ +G + + D+ A A+ GD + G + V+ + +F+ V+ Sbjct: 307 DVDMGDLTAQ---DLGAAAEAVFAAEVGDVVGPLPSDLGPALFRVNGTLDARITTFESVE 363 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 ++ +++ +A ++ + L + LA G +++E+++ ++L +D+ G Sbjct: 364 AELRDELAGERARRLIEAQAESLNDMLAGGATLEELAQD---TDMELGQIDWTEDSSDG- 419 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 VAA + V D P L DG+ +++ E + R L+ V Sbjct: 420 -VAAYAGFRAVATEVAEGDFP----EIGFLEDGAVFALRLDEELEPRPEPLDSARERVIA 474 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEG 514 W +T + KA + + +G Sbjct: 475 AWTAAETRRALQDKAASVATGLATDG 500 >gi|89069544|ref|ZP_01156888.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516] gi|89044879|gb|EAR50969.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516] Length = 613 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 120/512 (23%), Positives = 228/512 (44%), Gaps = 22/512 (4%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELG 65 K TWV L +LF + +G + +SG+ T+ SVG +++ + +++ Sbjct: 7 KTVATWV---ILGLLFFGLIGFGAT----GLSGNVRTLGSVGEKEIAIQDYARELNRQIN 59 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + Q+ G + G+D+ +L +L+S TLD ++GL A GRV E+ SP F Sbjct: 60 QLQQQTGQTLTFSEVEQFGIDRMVLSSLISRRTLDNEAAELGLSAGDGRVAAEVRASPAF 119 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 G D F + + L R G+ E EY + L+R + V + S+ D + Sbjct: 120 QGLDGSFDREGYKFALDRNGLTEGEYESEIREQLARGLLQRAVVAAIPESDTYADVIAAY 179 Query: 186 YFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E RS + L+ + I +P++A L ++E D + PE + I+Y Sbjct: 180 LGETRSFVWAELDEDDLAEPIPEPTDAELQAYYEANLDAFTRPETREITYAALTPDMILD 239 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQ 303 +E+ +LQA Y++ + Y PE R VE+L+FP++ A A ++ G+ F + Sbjct: 240 DVEVDRADLQALYDERIDDYVRPERRLVERLIFPDEDAAAAALARIESGESDFDSEVRAR 299 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G L+DI LG +++ + + +++F+ A+ GD G + ++ + P+ V Sbjct: 300 GLDLADIDLGDVAQDRLG--AAGEAVFA-ARPGDVVGPHPTDLGPALFRMNAVLPAQEVP 356 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 +E + D+ ++ A +V+ + + + +A G +++++S R ++L + + Sbjct: 357 LEEAEADLRVELAADVARRRVQSVGEEIADLIAGGATLEDLSER---TDLELGTLTYTDD 413 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 G A E R P V L DG +++ E LEE Sbjct: 414 SRDGLAAYAAFRAEAASAR------PEDFPELVELEDGGIFALRVDEVREPAPIPLEETR 467 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 V W+ + +E + ++A ++ + G+ Sbjct: 468 EAVAAAWREAQRSERLLARAEEMAATIEETGR 499 >gi|159044344|ref|YP_001533138.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter shibae DFL 12] gi|157912104|gb|ABV93537.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter shibae DFL 12] Length = 614 Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 124/517 (23%), Positives = 238/517 (46%), Gaps = 35/517 (6%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 I L +L V +G+S S GS+ V SVG + + + + +L Q+ G Sbjct: 12 ILLGLLIVALAGFGIS----SFGGSNARVGSVGDTDITVDEYARALQTQLRAAGQQRGRA 67 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V+ AR +GLD+++L LV+ A +D +G+ RV +I P F G F Sbjct: 68 VSMAEARELGLDRQVLAQLVNTAAIDNEAAKLGVSVGDMRVAEQIQTIPAFSGIGGGFDR 127 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP----SNLLLD--QAKR-FYF 187 + + L + ++ +E+ +R + +GG+R + L D A+R F + Sbjct: 128 EAYEFTLQQNNLSPEEFEADVRNEAARNLLQAAVIGGLRAPQAYTGTLYDFIAARRDFTW 187 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + D + L A P++A L +++ + APE + I+Y+L + ++ Sbjct: 188 AEITPDLVALTQ------AMPTDAELRAFYDANPAAFTAPETREITYVLLSPEMMQDQVS 241 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKS 306 S ++L+A Y++ Y PE R ++++VF + +A EA +L G + F +L + S Sbjct: 242 PSEEDLRAAYDRAASVYVQPERRLLDRVVFGTEAQAAEAKAALDSGAQSFEELLAARDLS 301 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 L D+ LG +++ + D ++A+ +F + G PV + G + ++ + +F+E Sbjct: 302 LEDVDLGEVARDDLDD-AVAEVVFGDQETGIVGPV-RTALGPALFRINAALAAQVTTFEE 359 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP--LVDFAGKD 424 + ++ + A V ++ + L++ LA G +++E+ + D P L + + Sbjct: 360 ARDELTAALAGDAARRAVADEIEALDDLLAGGATLEEL-------AADTPAELGELSLTA 412 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 + +AA P L + D P L DG +++ E +P R +EV Sbjct: 413 TTTEGIAAYPEVRALANTLSEGDFP----EIETLDDGGVFALRLDEVVPPRLLPFDEVRE 468 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 DV W+ + + +S++A + V E + G++F D G Sbjct: 469 DVVAGWEAQRLQDALSAEAAR-VAEALRGGESFADQG 504 >gi|254465313|ref|ZP_05078724.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium Y4I] gi|206686221|gb|EDZ46703.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium Y4I] Length = 613 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/516 (23%), Positives = 226/516 (43%), Gaps = 18/516 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++K S+T+V I + +L V +G A+ S SS+V VG ++V S++ Sbjct: 1 MAAGMKKLSKTFV-WILMGMLIVGLAGFG---AVNFTSSSSSVAQVGDEEVSIGSYVREL 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + + G V + + G+D+ +L L+S A LD +GL + E++ Sbjct: 57 QREQRALQAQTGQAVTMAQMSAFGMDRMVLGRLISLAALDHESRQLGLSIGDDNLIEELS 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F F + + L G+ EKE+ D + +RT V + G + L + Sbjct: 117 AIDAFKNVSGGFDREAYRFALRNAGLTEKEFEDDLRREAARTMVQNAMLSGTKMPATLTE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 F RS Y+ LN + A+ PS+A L ++E +D + PE K I+Y Sbjct: 177 TLTSFIGARRSFSYVQLNAADIALTAEAPSDADLQAFYEANQDQFMLPETKVITYAALRP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298 +IE+ +LQ +E ++Y PE R VE+LVF ++ A A L+ G F Sbjct: 237 STLLDEIEVDEAQLQRLFEDRADQYQVPERRLVERLVFGSEDAAASAKAQLETGGATFES 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L E +G +L D +G + + D+ A + + GD + G + V+ Sbjct: 297 LVEARGLTLQDTDMGDVA---MGDLGAAGTEVFATQVGDVAGPLPSDLGPALYRVNGRLE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + +F++ K ++ ++ +A V+ + +++ LA G +++E++ ++L + Sbjct: 354 AQITTFEDAKPELIEELASDRARRLVESQAEGIDDMLAGGATLEELATES---GLELAQI 410 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 ++ G +AA V +D P L DGS +++ + +P R Sbjct: 411 NWTEDTSDG--IAAYEAFRTAAAAVTAEDFP----EAGFLEDGSLFALRLDDVLPERPEP 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + V W+ + A+ + + ++ + + G Sbjct: 465 FADAKDKVLAAWQADRLAKALKDQGEAVLAQAEQAG 500 >gi|110680386|ref|YP_683393.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter denitrificans OCh 114] gi|109456502|gb|ABG32707.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter denitrificans OCh 114] Length = 612 Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 109/482 (22%), Positives = 221/482 (45%), Gaps = 16/482 (3%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 T+ + G + +P + +QE+ + Q+ V+ ++A+ +GLD+ +L LV+ +LD Sbjct: 37 TIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVATRSLDH 96 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 +GL + I F G + +F + + L + G++E E+ + ++R Sbjct: 97 ETSQLGLSIGDEELRRRILDISAFQGINGEFDREGYRFALEQTGLSEAEFETQLREEVAR 156 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKY 220 T V G +GG+ +D + E RS + +L+ + + P +AVL ++ Sbjct: 157 TIVQGAVLGGIAMPETYVDTLVNYIGEQRSFTWSLLDASDLATPLGAPDDAVLRAHYDDN 216 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 D + PE K+I+Y +E+ + L+ Y + ++ PE R VE+L F ++ Sbjct: 217 IDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAQQSAEFNQPERRLVERLAFLDR 276 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + A +A +L G F L +G +L DI LG S+ + + +F+ A G Sbjct: 277 QSAQQAADALAAGDSFDDLVRGRGLALEDIDLGDVSEAELGEAGA--GVFA-ADVGAVVG 333 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + G + V+ + + F++ + Q+ +AS V + ++ LA G + Sbjct: 334 PFPSTLGPALFRVNAVLAAQETPFEDAIDLLRPQLAADRASRLVAAQAESFDDLLAAGAT 393 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 +++++ +V + +D+ + +E+AA P Q V +D P +L D Sbjct: 394 LEDLASETDMV---VAQIDWTAQST--EEIAAYPTFRQAAAAVGPRDFP----EIASLDD 444 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK-ANQLVLEYSKEGKNFRD 519 G +++ +P R +E+ ++ W+ +TA+ ++ + A Q+ L + G +F D Sbjct: 445 GGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAAQVGL--LENGSSFAD 502 Query: 520 IG 521 +G Sbjct: 503 LG 504 >gi|332532266|ref|ZP_08408147.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas haloplanktis ANT/505] gi|332038364|gb|EGI74809.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas haloplanktis ANT/505] Length = 633 Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 151/626 (24%), Positives = 273/626 (43%), Gaps = 80/626 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ S+ VAKI L + + F + G+ L G +T V V K+ + F Sbjct: 1 MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL----GQTTEQPVAEVNGIKISQTDFN 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q+ G + ++ + + ++D LV Q D+GL Sbjct: 57 RAYQNERSRLEQQFGEYFTQIAADPNYMAQIRQGVVDRLVQQELQSQLAADLGLRVSDES 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F + KF++D ++ + + + ++ K ++R+ VV G Sbjct: 117 VRKTILELPYFQIGE-KFNNDRYLQVIRQMNFQPDAFREYLRKDMTRSQVVSAVAGTDFA 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L A + RS+DY+V+N + A + S+ ++ +++ + +PE +SY Sbjct: 176 LESELKSAIALQQQTRSIDYVVVNKEALAANVEVSDQEVSDYYDLNASQFLSPELISVSY 235 Query: 235 ILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------- 286 I ++ + +E +++D+++A YE+NK +Y PE R V ++ N ++ D A Sbjct: 236 I--ELKAADINVESVTDDDVKAYYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKEKANAL 293 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY------IPDVSLADSIFSLAKKGDFTP 340 L++G F +LA+ S DI G + + D + D+ F+L KGD + Sbjct: 294 HAQLEQGADFAELAQ---SSSDDIVSGEMGGDLEWIERDVMDPAFEDAAFALENKGDISD 350 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V+ FGY I +++I+P ++ +VK D+ ++ + +EK+ Y++ E AL Sbjct: 351 VVTSEFGYHIIKLTDIQPQQVKAYDDVKADLRAEL---EQAEKIDAFYEKQTEMGALAF- 406 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA--- 457 EIS R L D A EVA + K L + +PL+ V Sbjct: 407 --EISDR---------LDDAA-------EVAEVEVKSTPLLALNALPEPLNSPAVVTALT 448 Query: 458 ---------------LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 L D + V+I E A + L+EV ++K K++E K Sbjct: 449 SVDLLEDKVNSEVIELGDEHAIIVRINEHKAAATKPLDEVSEEIKARLVNEKSSELAKEK 508 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF--SGPVE-- 558 A L E + GK+ D+ LT Q ++ ++ ++Q F + P + Sbjct: 509 ARSLFAEV-QAGKSLNDVANEQS---LTLRQEAKLTRQSYTVSPAIVTQAFKMAHPADSA 564 Query: 559 MVKCFPIENGLSYVVF--KVTNSKVG 582 +V + NG + +V VT+++V Sbjct: 565 VVDLVNLNNGDAAIVALKSVTDAQVA 590 >gi|83951843|ref|ZP_00960575.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM] gi|83836849|gb|EAP76146.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM] Length = 609 Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 110/489 (22%), Positives = 223/489 (45%), Gaps = 16/489 (3%) Query: 36 SVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 ++SG+ +V SVG K+ + + + + E+ + + G ++ +AR +GLD+ +L LV Sbjct: 24 NLSGNVQSVGSVGDTKIDINDYARTLQNEIRALEAQRGERLSFAQARELGLDQAVLGRLV 83 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + L+ + IG+ + EI F G D KF + L + G+NE + + Sbjct: 84 TTTALEDETQRIGISIGDANLRDEILNIQAFQGLDGKFDRQAYEFALQQAGLNETRFEED 143 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVL 213 +RT + G V G+R D + E R + + VL + + +P+ L Sbjct: 144 MRAETARTLLQGAVVAGVRAPEAYGDTLINYLGERRDISWAVLARADLQTGLPEPTEEDL 203 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 + E ++ + PE K I+Y +E+ D L+A Y++ +Y PE R VE Sbjct: 204 AAYHEAHQAEFTTPETKAITYAWLTPDMILDTVEVDEDALRAAYDERSAEYNQPERRLVE 263 Query: 274 QLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +LVF + A +A ++ G+ F L + LSD+ +G ++ + + D++F+ Sbjct: 264 RLVFLDSAAASDALARIESGEASFEDLVAARDLELSDVDIGDVTRAQLG--AAGDTVFA- 320 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 A+ GD + G + V+ + + V F+E + + +++ +A ++ ++ Sbjct: 321 AEAGDVVGPVDTDLGPALFRVNGVLAAQVVPFEEAEPMLRDELAGDRARRVIESSMDNID 380 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + LA G +++ +++ ++L +D+ + +G + Q V D P Sbjct: 381 DLLAGGATIEGLAQE---TDLELGKIDWHPEVTEG--IGGYESFRQAAAAVTTDDYP--- 432 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 + L DG +++ E+I R + +EEV + + W E + S++ + S+ Sbjct: 433 -QVIELDDGGLFAMRLDETIAPRVQPVEEVRDALAEAWTRQTIVEALRSQSEADIAALSQ 491 Query: 513 EGKNFRDIG 521 G +F ++G Sbjct: 492 -GTSFEELG 499 >gi|84686955|ref|ZP_01014838.1| hypothetical protein 1099457000244_RB2654_01575 [Maritimibacter alkaliphilus HTCC2654] gi|84664929|gb|EAQ11410.1| hypothetical protein RB2654_01575 [Rhodobacterales bacterium HTCC2654] Length = 613 Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 135/616 (21%), Positives = 271/616 (43%), Gaps = 28/616 (4%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 +++++ V + G F SG S + VG ++ S++ E Q+ G + Sbjct: 10 VWIIMALVMVGLIGFGSVNFGGSGQS-IGKVGDTEIDASAYFRELNAEFQGWQQQTGQNL 68 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 A+ +GLD+++L +V+ ++ + +GL + + P F G + +F D Sbjct: 69 TMAEAQEIGLDQRVLSRVVAITAVENETDRLGLSVGDQNLASRVTEIPAFQGPNGQFDRD 128 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 + L + G+ +E+ + ++RT + G + ++ D + E R + Sbjct: 129 TYDFVLEQSGLTAREFEETLRLEVARTILAGAVTSDLEMPDVYTDTLFGWARETRDFTWA 188 Query: 196 VLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +P+ A L ++E D++ PE ++I+Y + +I + + +LQ Sbjct: 189 PVTRSALEEPLPEPTEADLEAYYEANPDDFTTPETRQITYGWLKPEDVLDEIPMDDTQLQ 248 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313 A Y++ +++ PE R VE+LVF + EA A ++ G+ F Q + +G SLSD+ +G Sbjct: 249 ALYDQRIDEFQVPERRLVERLVFGSADEAQAAADRIEAGETTFDQEVQARGLSLSDVDMG 308 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 ++ + + IF+L G P I G + ++ I + SF+EV+ + Sbjct: 309 DVTRRALGQA--GEPIFALDAPGVVGP-IETDLGPALFRMNAILSAQETSFEEVRDQLFE 365 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + A V+ ++E +A G +++E++ E ++++D + + + G A Sbjct: 366 EYAADAARRLVRTRATEIDEMMAGGATLEELA-AEGLITVD--TIGYFDGNQDGI-AAYA 421 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P++E D P L DGS +++ E P + L+EV V W+ Sbjct: 422 PFREA-ASEASESDFP----EVTELEDGSVFALRLDEITPPALQPLDEVRDAVVAGWEAQ 476 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKN--LGASLLTTNQINRMDN---ENKFFGYDG 548 E + ++A L+ ++ + +G L + T+ I + E F +G Sbjct: 477 TLTEALVARAEALIPQFESGAEAPSTVGLTEVLEEDIARTSFIQGTPSTMIETAFEMEEG 536 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSVI 607 QV SG ++V GL+ V + QE K F + ++Q + D+ D+ Sbjct: 537 TWQVVSGDGQVVVL-----GLTDV--NAPDQDSAEAQEIKTTFGARVSQQIAADVQDAFA 589 Query: 608 AYLKSQYSVTVHDNLI 623 A L++ VT+ +I Sbjct: 590 AALEADAGVTLDQAMI 605 >gi|114765314|ref|ZP_01444431.1| hypothetical protein 1100011001355_R2601_24744 [Pelagibaca bermudensis HTCC2601] gi|114542294|gb|EAU45323.1| hypothetical protein R2601_24744 [Roseovarius sp. HTCC2601] Length = 615 Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 184/395 (46%), Gaps = 14/395 (3%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 L+ FV F +G + FS G + SVG + S + + + EL + G + Sbjct: 16 ILIASFVGFGAFGTVN--FS-GGVGNIGSVGDTTISTSDYARALQSELRAQQAQTGRAIT 72 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 E+AR GL ++L +V+ A L+ IGL RV +++ F+G D F Sbjct: 73 VEQARQSGLTDQVLAQVVTNAALEDETTRIGLSVGDERVAEDLSNVEAFNGPDGNFDRSA 132 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + L G+NE E+ ++ + +R+ + + G + +D + E+R+ + Sbjct: 133 YAYALQNAGLNEGEFEENLRRDAARSILSAAVISGTTLPDAYVDTLLEYIGESRAFTWAT 192 Query: 197 LN----NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 L N +P PS L W++ D + PE K I++ +E+ D Sbjct: 193 LERDALNTGLPV---PSEDELQAWYDDNIDLFTLPETKVITFAWLTPDMIVDTVEVEEDA 249 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDIS 311 L+A Y++ E++ PE R +E+LVF + EA A + + F + +E+G +L D Sbjct: 250 LRAAYDERAEEFNLPERRLIERLVFSTEAEAQAAADRIASVEADFETVVDERGLALIDTD 309 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 +G +++ + D A+ +FS A+ GD SFG + V+ + P+ ++E D+ Sbjct: 310 MGDVTRDTLGDA--AEPVFS-AEVGDVVGPAPSSFGPALYRVNGVLPAQETPYEEAVPDL 366 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + + +A ++ +++ LA G +++E+++ Sbjct: 367 RDALVLDRARRVIEGMASSIDDELAGGATLEELAQ 401 >gi|330994544|ref|ZP_08318468.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp. SXCC-1] gi|329758398|gb|EGG74918.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp. SXCC-1] Length = 665 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/490 (22%), Positives = 217/490 (44%), Gaps = 13/490 (2%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS--VGRQKVPFSSFINSWKQELGMIS 68 +WV +I + F+ F+ +G+ D L ++ V+ VG + + S+ N+ + E+ ++ Sbjct: 33 SWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGSRPILVQSYQNALQSEMPQVA 92 Query: 69 QKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 Q + ++ A + +++L LV A + + + GL V EI P F Sbjct: 93 QSMHLSDPAQIPPATREQVARQVLQRLVLQAEIAEAADRHGLIVPDSVVRDEIFSIPAFR 152 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 G + +F +F RL R G+ E I+ + + ++ G ++++ + F Sbjct: 153 GTNGQFDRALFNDRLHRTGMTEGRLIELVRQEQASRVLLEPIRDGATVPDVMVRRLFDFE 212 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + R++D + + A P+ A L ++ + + APEY+ ++ + + Sbjct: 213 AQTRTIDLVRVPFDSQQVTATPTPAQLARYHANHPWEFTAPEYRHARVVVLSADTIGRML 272 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I++ ELQ Y+ + + +PE R+V+ + P Q A + Q+ ++ G+ Sbjct: 273 DITDAELQKSYQDQAQTFSAPERRSVQIVTVPTQDRATALRARWTDAGAWAQVQKDAGRD 332 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 + + L + IP L +IF+ PV G+V+ V+ + P+ T F + Sbjct: 333 AAAVELPGMKQTDIPSADLGRAIFAAPVDVTQGPV-KSEGGWVVFRVTTLTPAHTTPFAD 391 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 VK+ + +Q+ T+A + + ++L++ +A G +D I V++ L D +G + Sbjct: 392 VKQALHDQIAHTRAQALLADRVQKLQDAIA-GGGLDSIPADLGAVAVSGDL-DASGNTHE 449 Query: 427 GKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 G A IP ++ ++ RVF + S V PDG++ V + P L E Sbjct: 450 GTP-APIPGSDAVRQAVIARVFSQAKGASP-VLVQGPDGAWYAVSVDGVTPGHALDLAEA 507 Query: 483 LTDVKKDWKT 492 V W+ Sbjct: 508 GPRVAAAWQA 517 >gi|238759258|ref|ZP_04620425.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236] gi|238702545|gb|EEP95095.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236] Length = 628 Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 190/394 (48%), Gaps = 26/394 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q + + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDYAAKVNGQDISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 MQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAQKLGLSASDAQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F DNKF ++ ++ + R G +++ + L ++ F G + P Sbjct: 119 EAIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPEQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 S L+L Q R V ++ + + A ++ L ++E+ K+++ APE Sbjct: 178 IEAQAMSELILQQ--------RDVRLATIDLKALQAQQKVTDEELKAYYEQNKNSFIAPE 229 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++S+I D + KI ++ +++ A YE++K Y PE R + F + EA A Sbjct: 230 QMKVSFIAMDAAAMQDKITVTEEDIAAYYEQHKSSYTQPERRNYSVIQFKTEAEAKAALD 289 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346 LKKG F +A+E+ + G P+ + AD + +L +KG + V+ S Sbjct: 290 ELKKGADFAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSV 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 GY+I +++IKP EV + +A Q++ KA Sbjct: 349 GYLIVRLNDIKPELVKPLSEVHEALAKQVKQEKA 382 >gi|323495052|ref|ZP_08100141.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG 20546] gi|323310709|gb|EGA63884.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG 20546] Length = 619 Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 127/547 (23%), Positives = 253/547 (46%), Gaps = 23/547 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + V GS+ + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNSAAKVGNVEIGRGEFEQA 58 Query: 60 WKQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + N ++ + K +LD +V+ L+Q E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAESLGLRVSDSQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D KF +++ + L R G + + + ++ + L R ++ G Sbjct: 119 TLILEMPQFQ-VDGKFDQEIYQTALRRAGFSAESFAEYLRRDLVRNQLMTAIQGSDFALP 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ + + R + + L+ A A+ S ++ ++++ + Y PE +++Y+ Sbjct: 178 GEVEAQSKLLTQTRDIKKVTLSLADFAAKAELSEQEISDYYQQNPERYTRPEQVKVAYVE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGK 294 + ++ IEIS+++ + Y+++ +KY S E R V ++ +Q +A L G Sbjct: 238 LSAQQLKENIEISDEQAEKYYQEHIDKYSSEEQRRVSHILIEGDDQAKAQAILDELNAGA 297 Query: 295 KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LAEE+ G + SLG ++ + D S ++ F+L K G+ T ++ FGY I Sbjct: 298 DFATLAEEKSDDFGSASEGGSLGWIERD-VMDPSFEEAAFALTKVGETTGLVKSDFGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREK 409 + +K S +QEV +I +++ +A ++ E LE+ S+D+ + K Sbjct: 357 IKLDELKDSVAKPYQEVAAEIKQELKDQQAIDQYYELQSELEKVAFEYPDSLDDAA---K 413 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 ++ ++ DF + V E+ P Q + K+D L+ + P+ + V+++ Sbjct: 414 AINAEIHTTDFISQ-VDAPELLKTPAVLQAIVSPEVKEDGLNSEVIEVAPE-HVIVVRVE 471 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 +S LE+V +DV K VK + A LV E KEGK +D+ G + Sbjct: 472 DSRDETVLPLEQVRSDVTKALANVKGEQTAIELAQNLVAEL-KEGK--QDLLSESGLAFG 528 Query: 530 TTNQINR 536 T ++R Sbjct: 529 ETETLDR 535 >gi|163736555|ref|ZP_02143974.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter gallaeciensis BS107] gi|161390425|gb|EDQ14775.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter gallaeciensis BS107] Length = 613 Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 115/493 (23%), Positives = 215/493 (43%), Gaps = 16/493 (3%) Query: 19 VVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 V + + LI GL+ + +GS S+V VG Q+V + ++E + + G V Sbjct: 13 VWILMGMLIIGLAGFGAVNFTGSVSSVAVVGDQEVSVDDYARELQREQRALEAQTGQRVP 72 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + ++GLD+ +L L++ A LDQ D+GL ++ EI+R P F F+ D Sbjct: 73 IAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEISRIPAFQDGTGAFNRDT 132 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + L G+ E + + +RT V G + G + L D + RS D++ Sbjct: 133 YQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRDTLTSYVGARRSFDWLT 192 Query: 197 LNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 ++ + A +PS L +++ D + P K I+Y +IEI L+ Sbjct: 193 VSEESIALTAVEPSEDELRTFYDANIDQFTLPRTKVITYAALRPDALVDEIEIDAAALEQ 252 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGS 314 + +Y PE R VE+LVF N+ AD A L G F L ++G SL D+ LG Sbjct: 253 LFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDALVADRGLSLQDVDLGD 312 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + + D++ A A+ G+ + G + ++ + S ++VK ++ + Sbjct: 313 VT---MGDLASAGQDVFAAQVGNVVGPLDSDLGPALFRINGRLEARVTSLEDVKDELRAE 369 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + +A ++ + + + LA G +++E+ ++L +D+ G +AA Sbjct: 370 LATDRARRLIETRSEEINDMLAGGATLEELIDEP---GMELGKIDWHNGSTDG--IAAYD 424 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 Q V +D P L DGS +++ E + R + ++ W++ + Sbjct: 425 GFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEPFADAQDKLRAAWQSKR 480 Query: 495 TAEEVSSKANQLV 507 + + ++A +L Sbjct: 481 LQDALEAEAERLA 493 >gi|86138848|ref|ZP_01057420.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193] gi|85824495|gb|EAQ44698.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193] Length = 614 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 114/512 (22%), Positives = 223/512 (43%), Gaps = 18/512 (3%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 I+K S T+V I + +L V +G + FS S S V VG ++V ++ ++E Sbjct: 5 IKKLSNTFV-WILMGLLIVGLAGFGAVN--FS-SSMSAVALVGEEEVTVDEYLREMQREQ 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + + G ++ + + GLD+ +L L+S A +D ++++G+ + E+A P Sbjct: 61 RALQAQGGQALSLSQMAAFGLDQAVLGRLISIAAIDNEVKNLGISVGDDNLRQELAEIPA 120 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F F + L +NE ++ + +RT V G V G + + L Sbjct: 121 FQDPSGNFDRQTYSFALQNANLNESDFEADLRRESARTLVQGAIVVGAKMPDTLTKTLTS 180 Query: 185 FYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + RS Y+ + + I P +AVL ++E D++ PE KRI+Y Sbjct: 181 YIGARRSFSYVPFSPDQISLIQVVPEDAVLMAFYEANADDFTLPETKRITYARLSPDMIL 240 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302 +E+ + L+ Y E+Y E R VE+LVF + A +A L G F L E Sbjct: 241 DTVEVDEEALRTLYSDRSEQYQIAERRLVERLVFADDTSAADAKAQLDVAGTTFEALVEG 300 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +G +L DI LG ++ ++ D + A+ G + G + V+ + Sbjct: 301 RGLALQDIDLGDVTQSFLGDAA---EAVFAAEVGTIVGPLPSDLGPALYRVNGQLEARHT 357 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 +F++ + ++ +++ +A +++ + + + LA G ++++++ D+ + Sbjct: 358 TFEQAEPELRDELAADRARRLIEQQAEEINDLLAGGATLEDLANES-----DMEVASLGW 412 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 G+ + A V +D P ++ L DGS +++ E +P R E+ Sbjct: 413 SGETGEGITAYEGFRTAASLVTVEDFPTAE----FLGDGSLFALRLDEILPERPEAFEDA 468 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 V W+ + A + ++A L+ ++ G Sbjct: 469 KAKVLAAWEADRVATALQAEAEALLATVTQTG 500 >gi|163742798|ref|ZP_02150183.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10] gi|161384053|gb|EDQ08437.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10] Length = 613 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 115/493 (23%), Positives = 214/493 (43%), Gaps = 16/493 (3%) Query: 19 VVLFVPFLIWGLSD-ALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 V + + LI GL+ + +GS S+V VG Q+V + ++E + + G V Sbjct: 13 VWILMGMLIIGLAGFGAVNFTGSVSSVAVVGDQEVSVDDYARELQREQRALEAQTGQRVP 72 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + ++GLD+ +L L++ A LDQ D+GL ++ EI+R P F F+ D Sbjct: 73 IAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEISRIPAFQDGTGAFNRDT 132 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + L G+ E + + +RT V G + G + L D + RS D++ Sbjct: 133 YQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRDTLTSYVGARRSFDWLT 192 Query: 197 LNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 ++ + +PS L +++ D + P K I+Y +IEI L+ Sbjct: 193 VSEDSIALTEVEPSEDELRAFYDANIDQFTLPRTKVITYAALRPDALVDEIEIDAAALEQ 252 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGS 314 + +Y PE R VE+LVF N+ AD A L G F L ++G SL D+ LG Sbjct: 253 LFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDALVADRGLSLQDVDLGD 312 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + + D++ A A+ GD + G + ++ + S ++VK ++ + Sbjct: 313 VT---MGDLASAGQDVFAAQVGDVVGPLDSDLGPALFRINGRLEARVTSLEDVKDELRAE 369 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + +A ++ + + + LA G +++E+ ++L +D+ G +AA Sbjct: 370 LATDRARRLIETRSEEINDMLAGGATLEELIDEP---GMELGKIDWHNGSTDG--IAAYD 424 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 Q V +D P L DGS +++ E + R + ++ W++ + Sbjct: 425 GFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEPFADAQDKLRAAWQSKR 480 Query: 495 TAEEVSSKANQLV 507 + + ++A +L Sbjct: 481 LQDALEAEAERLA 493 >gi|114771096|ref|ZP_01448536.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255] gi|114548378|gb|EAU51264.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255] Length = 624 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 142/606 (23%), Positives = 281/606 (46%), Gaps = 43/606 (7%) Query: 37 VSGS--STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 V GS S++ VG + +P +S+ S + + IS++IG + S+ + GL + L+N+V Sbjct: 34 VDGSRISSIGKVGEEPIPVTSYAQSLRNTIQNISRQIGRQLTSQEISAYGLQSEALENVV 93 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 S A L + + + V EI +P F D KF + + L G++ KEY Sbjct: 94 SSAALSNEAKRLKISVGDDLVAEEIIATPTFTSVDGKFDKEAYEFALENSGLDTKEYELQ 153 Query: 155 YTKMLSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAV 212 K ++R+ + G G + PS+ + K F E RS D+ ++ + + A +P+ Sbjct: 154 TRKAIARSLIEGAVASGTKTPSSHAMTLIK-FAREERSFDWASIDKKLLSTQAINPTIDQ 212 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 L ++K Y AP ++++Y+L +I +S EL+ EY+ +++ P R + Sbjct: 213 LKAHYDKNNILYTAPLSRKLTYVLLSPEMLADRIVVSQSELKDEYKSQPDRFNKPARRII 272 Query: 273 EQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 ++++F + K A L K + F ++AE++G + +DI LG K + D + D +F+ Sbjct: 273 DRIIFDSVKTARTVKDQLDKEEVSFTKVAEDRGLTQTDIDLGDIEKGQL-DKDIDDLLFN 331 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 ++ G + P I + G + ++ I SF + +++ + ++ + + E + Sbjct: 332 ASEVGIYGP-IDTNLGPALFQINAIIDPQNTSFADAAEELTAEYVSIESRKLINEMITDI 390 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPL 450 ++ LA G +++EI++ +++L + + G +AA ++ + L G L Sbjct: 391 DDLLAQGLTLEEIAKE---TAMELEKISYDSTTENG--IAAYDGFRAEALKVKIGGFPEL 445 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + L DG +++ + I R E V V DW + + + A+ L+++ Sbjct: 446 RE-----LSDGGVFALRLDDLIEPALRPFETVKDQVATDWSASEDKKSLLKLADTLIIKL 500 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI-----SQVFSGPVEMVKCFPI 565 G+ F + NL A + + I R NK+ DGI ++FS + K I Sbjct: 501 DN-GETFESL--NLNAE--SVSSITR----NKYI--DGIPAQLLEELFSN--KTGKTSKI 547 Query: 566 ENGLSYVVFKVT-----NSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSVTVH 619 +NG + ++ ++ NS+ +E + L+ + DLL + LK + V ++ Sbjct: 548 DNGDTVLLARLNDISEFNSETDESKELLSQVGIQLSNQVTGDLLRLFASALKDRDGVILN 607 Query: 620 DNLIQR 625 N + + Sbjct: 608 QNAVNQ 613 >gi|315127185|ref|YP_004069188.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D) [Pseudoalteromonas sp. SM9913] gi|315015699|gb|ADT69037.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D) [Pseudoalteromonas sp. SM9913] Length = 633 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 129/567 (22%), Positives = 243/567 (42%), Gaps = 57/567 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAK+ L + + F + G+ L + V V K+ + F ++ Sbjct: 1 MLEKIREGSQGPVAKVILGAVILSFALAGIGSYLGQTT-EQPVAEVNGIKISQTEFSRAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q+ G + ++ + + ++D LV Q ++GL + Sbjct: 60 QNERSRLEQQFGEYFTQIAADPTYMAQIRQGVIDRLVQQELQSQLATELGLRVSDESIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F++D ++ + + + ++ ++R+ +V G Sbjct: 120 TILELPYFKIGD-QFNNDRYLQVIRQMNFQPDSFREYLRDDMTRSQLVSAVAGTDFALQN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L A + RS+DY+V++ + + A D ++ + ++E + +PE ++YI Sbjct: 179 ELKSAIALQQQTRSIDYLVIDKQAMQADVDVTDQEVADYYELNAGQFLSPELISVNYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290 D + + +S D+++A YE++K +Y PE R V ++ N ++ D A L Sbjct: 239 DADDIDVA-SVSEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297 Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F QLAE + +G + + + + + D+ F+L KGD++ V+ FG Sbjct: 298 NAGADFAQLAESSSDDIVSAEMGGDLEWIERDVMEPAFEDAAFALQNKGDYSDVVASEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I +++I+ + VK D+ ++ + +EKV Y++ E AL EIS R Sbjct: 358 YHIIKLTDIQSQQVKPYDAVKADLRAEL---EQAEKVDAFYEKQTEMGALAF---EISDR 411 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---------------- 451 L D A +V G EV + P L + +PL+ Sbjct: 412 ---------LDDAA--EVAGVEVQSTP-----LLALSALPEPLNNPAVITALSSVELLED 455 Query: 452 --KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + L + + V++ E PA + L EV +K + K ++ KA L + Sbjct: 456 KVNSEVIELGNEHVIVVRVNEHQPAATKALSEVSEQIKTRLENEKASDLAKEKARTLFAQ 515 Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINR 536 K+GK+ D+ S+ +Q+ R Sbjct: 516 I-KDGKSLNDVAAEQSLSVRQESQLTR 541 >gi|149203720|ref|ZP_01880689.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035] gi|149142837|gb|EDM30879.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035] Length = 614 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 111/536 (20%), Positives = 229/536 (42%), Gaps = 45/536 (8%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV L+V F LS + S+ VG ++ +++ + + E+ + + Sbjct: 12 WVLMGLLIVGLAGFGATNLSGNVRSIG------HVGTAEIDVTTYARALQNEIRALEAER 65 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G ++ AR+ G+D +L LV+ A L+ + +GL + +I P F G D Sbjct: 66 GSAMSFAEARAAGVDTDVLGRLVARAALEHEADRLGLSIGDENLREQILDIPSFQGLDGS 125 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F + + L + G+NE ++ ++ + T V + G++ + +D + E RS Sbjct: 126 FDREAYRFALDQAGLNESQFEENIRAETASTLVQAAALAGLQTPSTYMDTMMTYLAERRS 185 Query: 192 VDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + VL+ + + PS L + + + ++ PE K I++ +E+ Sbjct: 186 LAFAVLDRAALQSGLPVPSEDDLKTYHQGHLPDFTTPETKTITFAWVTPAMILDSVEVDE 245 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 L+ Y + + ++ PE R VE+LVF + A A + G L E+G ++DI Sbjct: 246 AALREAYAERETEFNMPERRLVERLVFADSAAATRARTRIDDGIALEMLVSERGLDMADI 305 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +G S+E + + AD +FS A+ G+ I + G + V+ + + +F+E + Sbjct: 306 DMGDVSREDLG--AAADPVFS-AQAGEVVGPIDTNLGPALFRVNAVLAAQITTFEEAEPR 362 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ +A ++ +++ LA G +++++++ + E+ Sbjct: 363 LREELAADRARRVIEAKIDTVDDLLAGGATLEDVAKETDL------------------EL 404 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPDGSYMWVQIKESIPARDRKLEE 481 +I + L + G D + VA L DG +++ + R + LE+ Sbjct: 405 GSIDWHPGLTEGMAGYDSFRAAAQAVATGDYPEVEQLADGGIFALRLDGIVEPRIQPLED 464 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 V V + W+ T + ++ + E + G +F D+G LT ++ M Sbjct: 465 VRDAVLRGWRAEATVTALRAQLEPQLAEL-RAGASFADLG-------LTATEVTDM 512 >gi|209542341|ref|YP_002274570.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] gi|209530018|gb|ACI49955.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] Length = 643 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 235/519 (45%), Gaps = 20/519 (3%) Query: 1 MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57 M+ +R A +W+ +I +LF+ F+ WG+ D L ++ + V VG Q + SF+ Sbjct: 1 MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60 Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ + EL +++++G S+ A +++L LV+ + + +G+ + Sbjct: 61 SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ +F G D +F +F SRL + G+ E +D L+ +V G R Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180 Query: 176 NLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +++ +A F + R++D I L ++ PA P A L ++++ + +R PE++ Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGDQGTPA---PDTATLRRFYDNHPWLFRLPEFRHAR 237 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 ++ + I+I + EL+ Y+ + KY PE R+V+ + P+Q A + G Sbjct: 238 IVVLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + ++ + K + + + + + IP LA +F+ A + G+V+ V Sbjct: 298 ADWAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P F ++++ +QM T+A++ V ++L++ +A G +D I V+I Sbjct: 356 TQVTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIA-GGGLDRIPDNLGAVAI 414 Query: 414 DLPLVDFAGKDVKGKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 L D G+ G E A +P + ++ R+F + + V PD ++ V + Sbjct: 415 AGTL-DEQGRTQAG-EPAPVPGSDALRRAIVARIFAQAK-GANPTLVQGPDNAWFAVAVD 471 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 P + R + V + W+ + +A L L Sbjct: 472 SVEPGQLRPFDAVPDQGRSAWEDESRRHTANVQATALYL 510 >gi|162147717|ref|YP_001602178.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] gi|161786294|emb|CAP55876.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] Length = 643 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 116/519 (22%), Positives = 235/519 (45%), Gaps = 20/519 (3%) Query: 1 MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57 M+ +R A +W+ +I +LF+ F+ WG+ D L ++ + V VG Q + SF+ Sbjct: 1 MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60 Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ + EL +++++G S+ A +++L LV+ + + +G+ + Sbjct: 61 SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ +F G D +F +F SRL + G+ E +D L+ +V G R Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180 Query: 176 NLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +++ +A F + R++D I L ++ PA P A L ++++ + +R PE++ Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGDQGTPA---PDTATLRRFYDNHPWLFRLPEFRHAR 237 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 ++ + I+I + EL+ Y+ + KY PE R+V+ + P+Q A + G Sbjct: 238 IVVLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + ++ + K + + + + + IP LA +F+ A + G+V+ V Sbjct: 298 ADWAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P F ++++ +QM T+A++ V ++L++ +A G +D I V+I Sbjct: 356 TQVTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIA-GGGLDRIPDNLGAVAI 414 Query: 414 DLPLVDFAGKDVKGKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 L D G+ G E A +P + ++ R+F + + V PD ++ V + Sbjct: 415 AGTL-DEQGRTQAG-EPAPVPGSDALRRAIVARIFAQAK-GANPTLVQGPDNAWFAVAVD 471 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 P + R + V + W+ + +A L L Sbjct: 472 SVEPGQLRPFDAVPDQGRGAWEDESRRHTANVQATALYL 510 >gi|56460109|ref|YP_155390.1| periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] gi|56179119|gb|AAV81841.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] Length = 622 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 129/573 (22%), Positives = 253/573 (44%), Gaps = 67/573 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+++ AK LV++ + F + G+ + S V V +++P S + ++ Sbjct: 1 MLERIREGSQSYTAKAILVLIILTFALAGVGGYITS-DTEDAVAKVNGEEIPRSDYDRAY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++ G + S+ L +L+ L+ L Q+ ED G+ +V Sbjct: 60 ENERSRLQEQFGDMFSAITSDPDYMRNLRSGVLEQLIEQELLVQYAEDNGMRVSPEQVKA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F +F +DV++ L G + + + K++ + + G+ + Sbjct: 120 AIRDISQFRTA-GQFDNDVYLMALRNAGYSP----EAFAKVMQQDMTRNQLLRGLSATAF 174 Query: 178 LLDQAK----RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L+ R ++RS ++V +N + + + ++++ +D +R E ++ Sbjct: 175 VLEPEAIAFMRLQSQSRSGGFLVASNESFEEQVEIAEQDIENFYQQNQDMFRTQEKLSVA 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ 288 Y+ + E ++EIS++E++ Y++ +++Y + E R V ++ +K+A+EA Sbjct: 235 YVELSLAAVESEVEISDEEVRQYYDERQQQYSTEEERRVSHILIEFETDNAKKKAEEALA 294 Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 LK+G F ++A+ EQG L I G +++ S+F L GD + Sbjct: 295 ELKQGADFSEVAQTYSDDTFSAEQGGDLGWIEAGMMDEDFDA------SVFELENVGDLS 348 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL---- 395 V+ SFGY I +++++ F EVK ++ Q+ KA ++ E ++L E Sbjct: 349 DVVETSFGYHIIKLTDLREGSVTPFNEVKDEVRQQLLTEKAEDRYFEKQQKLAEISFEQP 408 Query: 396 -ALGTSMDEIS---RREKIVSID---LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 L + +EI RR + + D PL D DV V + EQL+ D Sbjct: 409 DTLEPAAEEIGSTVRRSDLFTRDRAPTPLSD----DV----VLNNLFSEQLIKEKLNSD- 459 Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 + D + V++ E P R ++L+EV + + + KA QL L Sbjct: 460 ------IIETSDDRSLVVRVTEHQPVRVKELDEVREKIVSELRV--------EKAQQLAL 505 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 E + E G+ + ++ + I R + E+ Sbjct: 506 EQANEWMQAWKAGEEVSDEIVWVDSIQRNNGEH 538 >gi|23010100|ref|ZP_00050908.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 287 Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 5/242 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F SSTV +VG+ + Sbjct: 1 MLQSIRNASQHWLGKVVLTVIFT-FLIAGVAIFGVEEFFRGGSSSTVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++ARS+GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARSLGLERQVLSQLITEAALDQKTTDLGLAVSDAAVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V + Sbjct: 120 RAIQDEPSFKNANGTFDRVLFYQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E RS + L I DPS L+ +++ K ++RAPEY+R+ ++ Sbjct: 180 AIREAVHRYSTERRSAAVLTLAPSAAGEIPDPSEEELSAYYDNNKASFRAPEYRRLKLLV 239 Query: 237 FD 238 D Sbjct: 240 LD 241 >gi|238791435|ref|ZP_04635073.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC 29909] gi|238729051|gb|EEQ20567.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC 29909] Length = 628 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 190/394 (48%), Gaps = 26/394 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F DNKF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 S L+L Q R V ++ + + A ++ L ++++ K+++ APE Sbjct: 178 VEAQAMSELILQQ--------REVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPE 229 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++S+I+ D + KI ++ +++ A YE +K Y PE R + F + EA A Sbjct: 230 QMKVSFIVMDAAAMQDKITLTEEDIAAYYELHKSSYTQPEQRNYSVIQFKTEAEAKTALD 289 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346 LKKG F +A+E+ + G PD + AD + +L +KG + V+ S Sbjct: 290 ELKKGADFAAMAKEKSTDIISRKNGGELGWLEPDTT-ADELKQANLNEKGQLSDVVKSSV 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 GY+I +++IKP+ EV +A Q++ KA Sbjct: 349 GYLIVRLNDIKPAQVKPLSEVHDALAKQVKQGKA 382 >gi|296116178|ref|ZP_06834796.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii ATCC 23769] gi|295977284|gb|EFG84044.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii ATCC 23769] Length = 639 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 106/489 (21%), Positives = 208/489 (42%), Gaps = 16/489 (3%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMIS 68 +WV ++ + + F+ F+ WG+ D L ++ + V VG + ++ + + E+ I+ Sbjct: 8 SWVGRVIVGLFFLTFVGWGVGDVLMNIGTERADVVARVGPDPILVPAYEQALRTEMPQIA 67 Query: 69 QKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 Q++ S+ A + +++L L+ + + GL V EI P F Sbjct: 68 QQMHLDDPSQIPAATREQIAQQVLQRLILQDEVALAARNHGLLVPDSAVRAEIFAIPAFQ 127 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 K+ KF F +RL G+ E I+ + ++ G +LL + Sbjct: 128 DKNGKFDRTTFNNRLRSSGMTEARLIELVRAEQASKALMEPIRNGAGAPDLLTRRIFDLE 187 Query: 187 FENRSVDYI-VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R VD + V PA PS+A ++ + + APEY+ ++ + Sbjct: 188 AQTRKVDIVRVPFAAQTPAA--PSDAQARRFHTNHPWLFEAPEYRHARIVVLSPETVARS 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + I + +L YE+ +++ +PE R+V+ + PN+ A E + + G + + + GK Sbjct: 246 MTIPDADLHHMYEQQAQRFNTPETRSVQVITAPNEARARELLTTWQGGASWDAMQKSAGK 305 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + + + IP L IF+ A +P IH G+ I V ++ P+ F+ Sbjct: 306 DSASVEMDDIRISSIPSQELGRQIFN-APSDTVSPPIHTDGGWAIFRVLHVTPAHISDFE 364 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 + + Q + ++ + ++L++ +A G +D I V++ VD G Sbjct: 365 SARPALQAQALAERVQAQIGDRVQKLQDAIA-GGGLDSIPSELGAVAV-AGNVDAHGMTQ 422 Query: 426 KGKEVAAIP----YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 +G A IP ++ ++ RVF + S + P+G++ V + PAR E+ Sbjct: 423 EGTP-APIPGSDAVRQAIVARVFSQPK-GSSPELLQAPEGTWYAVSVDGVTPARPLSYED 480 Query: 482 VLTDVKKDW 490 V+ W Sbjct: 481 SAQKVRDAW 489 >gi|329850639|ref|ZP_08265484.1| rotamase family protein [Asticcacaulis biprosthecum C19] gi|328840954|gb|EGF90525.1| rotamase family protein [Asticcacaulis biprosthecum C19] Length = 645 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/518 (20%), Positives = 228/518 (44%), Gaps = 19/518 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---I 57 M+ I+R ++TW+ K ++++ F+ G + FS S S+ V+ G KV + F + Sbjct: 1 MISILRDFTKTWIFKGLMILIAASFIGVG-GASYFSGSNSTDVIVAGNVKVTAAEFKANV 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +S K+ + G + +E+ + + ++L L +++ +G+ + Sbjct: 60 DSMKRYY----ETQGQTITNEQLIAENIPGRLLAQLTDRKATIAWLDRLGVRPSSKLILA 115 Query: 118 EIARSPLF-HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 E+A+ PLF + +F D + +LA + +K + + ++ + G+ Sbjct: 116 EVAKIPLFFNSVTGRFDMDTYRQQLASRDMTDKMFEADLREQIAEQQYISSAQAGLEAPR 175 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + F ++R L+ ++V +P+ A + +++ + PE + S I Sbjct: 176 VFAATDAAFGLQSRDASMFFLSPQNVTMPGEPTQADIETFYKANLQRFTLPESRAASVIT 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 F V K + +S+++L+ YE + +PE+RT Q+ P+ A++ +LK G+ Sbjct: 236 FSVVNYAKSVSVSDEDLRQLYESRRASLATPEVRTFVQVRAPDMAAANKVSAALKAGRS- 294 Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 AEE K+ IS + + D +A++ F + + G+ + + G+ G + + Sbjct: 295 ---AEEAAKANKGEVISYSLRPQTAVADDKIAEAAFKM-QTGEISAPVQGTLGISVIKMG 350 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 IK SF+ + + ++R +A+EK+ E + LA G D +RR + Sbjct: 351 EIKIGSAPSFESARAQLDEELRRQRATEKLNEATNAFADALAKGEEFDAAARRLNLTVAP 410 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 L + G G + L+ +F S + L +G Y +++ P+ Sbjct: 411 LEPITADGMGRSGTNYSTY---GALVKGIFDLPQVGSVSEVLPLGEGEYFALKLTGLQPS 467 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 L +V ++ W+ K AE ++++A++ + +K Sbjct: 468 GAPPLAQVQAELAVLWRREKAAETINAEADKAMARLAK 505 >gi|294011597|ref|YP_003545057.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S] gi|292674927|dbj|BAI96445.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S] Length = 649 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 113/466 (24%), Positives = 202/466 (43%), Gaps = 29/466 (6%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFS 54 ML + R+ R+ + A IFL ++ F++ ++ F S+ G T G ++ + Sbjct: 1 MLSVFRRFIRSKLGAFAALIFLGIIAAAFIMGDITSGNFGSSMGGGETAARAGGSRLTMT 60 Query: 55 S--------FINSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 F N+ + G+ +IG F+ G ++ D LV+ TL ++ D Sbjct: 61 ELQDRVQRVFENARRSNPGL---QIGDFLAQ-------GGAAQVYDQLVASMTLKEYASD 110 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRTDV 164 + V +IA+ P F FS + F L RE I E+ D ++ +L R + Sbjct: 111 QKVHISKRLVDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDISREILERQML 170 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 + +G +++L A E R V+ IADP++A L ++ K Y Sbjct: 171 APLGLGVKLTDSMVLPYAS-LLLEARQGTIAVIPATAFKDIADPTDAQLDDFYRKNAARY 229 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 PE +RI Y + D + + ++ E+ + Y +NK Y + E R+ EQL+ P Q A Sbjct: 230 TIPEQRRIRYAVIDAERFAQAAQPTDAEIASYYNQNKAAYAAKESRSFEQLILPTQAAAK 289 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K GK A+ G S+S++ S + + AK+G+ + G Sbjct: 290 AIADQVKGGKSLAAAAQSAGLSVSELKDQSREALASAASAAVANAGFAAKQGELAGPLRG 349 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 S G+V+ V+ ++ + + V+ +I +R K + + ++E+ +A G S DE+ Sbjct: 350 SLGWVLLRVTAVRTTPARALAAVRDEIVAALRAQKEKRLLNDFTGKIEDQIANGGSFDEV 409 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDD 448 + + P + +GK V+ + LL VFG +DD Sbjct: 410 VKDNGLKLETTPFLVSSGKQVEDAAYQVPADVKPLLAPVFGMSQDD 455 >gi|197105219|ref|YP_002130596.1| rotamase family protein [Phenylobacterium zucineum HLK1] gi|196478639|gb|ACG78167.1| rotamase family protein [Phenylobacterium zucineum HLK1] Length = 638 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 128/557 (22%), Positives = 246/557 (44%), Gaps = 22/557 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR+ +++WVA + + +L V F ++G++D +FS + V+ G + V + F + Sbjct: 1 MLAAIRQFAKSWVAAVLIGLLIVSFAVFGIND-VFSGATGDQVIKAGSRVVTSAEFRREY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q+ G + E A + G+D+++L+ L + + + IG+ + EI+ Sbjct: 60 EDYRKRLEQQAGQPITPEMAEANGIDRQVLNGLATREAFAEMLHKIGIRPSDKLLVAEIS 119 Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLL 178 + P F +F + F RLA + E D + G VG G+R Sbjct: 120 KIPAFFDPISGRFDRNTFQQRLAENDMT-PEGFDRALRDQMAAQHWGAGVGEGLRAPRAY 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 F E+R V + + +VPA+A P++ LT + ++ + PE + ++ + F Sbjct: 179 GALGAIFGLESRDVAWFNVTAANVPAVAAPTDEQLTAFMKENAEQLTRPEMRVLTVVRFT 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + EL+ YE K+ + PE RT+ Q+ + A + L +G Sbjct: 239 PQAVPQNTPVDEAELKKLYEFRKDTFSRPETRTLVQIPAKDAAAAQQIQAGLARGDDPAA 298 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 +A+ G + I+ K + D +AD F L + G G G + V ++ P Sbjct: 299 VAKAAGVDV--ITYEDKPKTALADRRVADVAFGL-QPGQVA-RAQGELGLAVVKVISVTP 354 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 TV+ +E + + ++R A++KV E + +E G + +++ + ++ + V Sbjct: 355 GQTVTLEEARPVLEAELRKNAAAQKVYEQAEAYDEAHRGGADLAAAAQQVGVPAMTVGPV 414 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G D +G+ V + +L + F D T A +G V+++ +P Sbjct: 415 TRQGVDEQGRPVPGL--TPAILEQAFSLPAGGEGDLTDA-GEGESFAVKVERVVPPAMPP 471 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--------GASLLT 530 L EV T++ + W +TA + ++AN+L E ++G++ + + G S T Sbjct: 472 LAEVRTELARVWSARETARRMEARANELA-ERVRKGESLEAVAASASLKVSRAEGLSRQT 530 Query: 531 TNQINRMDNE--NKFFG 545 Q + E N+ FG Sbjct: 531 AGQDPALSGELLNRAFG 547 >gi|294083766|ref|YP_003550523.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663338|gb|ADE38439.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 620 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 128/510 (25%), Positives = 235/510 (46%), Gaps = 35/510 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R +++ + K FLV L F +WG+ D + GS VS + + Sbjct: 1 MLQAMRSGAKSPIMKAFLVFLAGGFALWGVGDITTGLIGGSDKAVSASEESLSPREVALE 60 Query: 60 WKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ + ++ NS A GL +I+ +L + +GL Sbjct: 61 FER------ARRNYMPNSSTGEALQTGLLSEIVGSLSRAVIFNAENNTLGLTVTRAMQRD 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM---RP 174 +A F + FS F+ LA GI+E EY+ L R + V G+ + Sbjct: 115 AVANETNFQDEMGSFSEGRFMQTLASAGISEAEYLGRVDSALKRDQLTRALVAGVVSNKA 174 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAVLTQWFEKYKDNYRAPEYK-- 230 ++ LL ++ + R V + + V A I PS+A L +F + K +Y AP + Sbjct: 175 ADTLL---TKYELQQRVVK---MQSFAVDADNIGTPSDADLDTYFSENKSSYDAPTVRSA 228 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 R+ +I + E + ++IS D ++ + +++ +PE R V Q+VF + K+A+EA + Sbjct: 229 RVGFISATLIEAD--VDISEDMIKDAFGTRIDEFSTPETRVVRQMVFEDAKKANEARARV 286 Query: 291 KKGKKFIQLAEEQGK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 +G+ F +A + + +D+ LG+ +++ + D ++AD++F A T + FG Sbjct: 287 DQGEDFNAVAADMLNWTDTDVMLGTVTRDGL-DGAIADAVFD-ASVNVVTGPVETLFGQH 344 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE- 408 I V +I + ++V+ +I +R +A + + E LE+ +A G S+DE + Sbjct: 345 ILIVDDITEGGNATLEDVRDEITRTLRSEEAIDLLYERANLLEDEIASGASLDEALGKAG 404 Query: 409 -KIVSIDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 KIV+I+ +D G D+ G+ + + I + ++ ++ D A D +M Sbjct: 405 GKIVTIN--DIDRNGLDIDGQPMVDDSEIAQESAIIEAIWTNDIGTLSVLQEASADIFFM 462 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 V + AR R L+EV KDWK V+ Sbjct: 463 -VDVTTETEARPRTLDEVKQRAIKDWKLVQ 491 >gi|51595313|ref|YP_069504.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pseudotuberculosis IP 32953] gi|153948580|ref|YP_001402048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pseudotuberculosis IP 31758] gi|170025447|ref|YP_001721952.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis YPIII] gi|186894330|ref|YP_001871442.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis PB1/+] gi|51588595|emb|CAH20203.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Yersinia pseudotuberculosis IP 32953] gi|152960075|gb|ABS47536.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP 31758] gi|169751981|gb|ACA69499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis YPIII] gi|186697356|gb|ACC87985.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis PB1/+] Length = 628 Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 185/392 (47%), Gaps = 22/392 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q + + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDYAAKVNDQDISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + QK+G V+ + L +++L L++ LDQ+ +GL +V Sbjct: 59 MQSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I + P F ++ F ++ +++ + + G +++ + L ++ F G + P Sbjct: 119 ESIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + + R V L+ + + A ++ L ++++ K N+ APE ++S+ Sbjct: 178 --IEVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + I ++ +++ A Y++N+ Y PE R + F + EA A LKKG Sbjct: 236 IAMDAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEAEAKAALDELKKGA 295 Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F +A+E KS IS LG E PD A +L++KG + VI S GY Sbjct: 296 DFAVIAKE--KSTDIISRNNGGELGWLEPETTPDEVKA---ANLSEKGQLSDVIKSSVGY 350 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +I +++IKP EV ++A +++ KA Sbjct: 351 LIVRLNDIKPELVKPLSEVHDELAKKLKQEKA 382 >gi|170767918|ref|ZP_02902371.1| peptidylprolyl isomerase [Escherichia albertii TW07627] gi|170123406|gb|EDS92337.1| peptidylprolyl isomerase [Escherichia albertii TW07627] Length = 623 Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 144/652 (22%), Positives = 291/652 (44%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDRY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + S L + G++ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNSILNQMGMS----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQAVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y++++E++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQEQFTQPQRMRYSIIQTKTEDEAKAVLAELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATVPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +++P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDVQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L++E K GK + + A Sbjct: 467 RISEHKPETVKPLADVQEQVKAMVQHNKAEQQAKLDAEKLLVEL-KAGKG----AEAMQA 521 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 + L + ++ G D ISQ F+ P P ++ SY V+ Sbjct: 522 AALKFGEPKTLNRS----GQDPISQAAFALP------LPTQDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P ++K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|260428591|ref|ZP_05782570.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp. SE45] gi|260423083|gb|EEX16334.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp. SE45] Length = 615 Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 113/517 (21%), Positives = 220/517 (42%), Gaps = 16/517 (3%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 VL F+ +G + G+ ++ SVG + + + + + E+ + + G V E+ Sbjct: 16 VLIASFVGFGAFGTVNFTGGAGSIGSVGDTTIETTDYARALQNEMRAVEAQTGQPVTLEQ 75 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 AR GL ++L +V+ A LD+ +G+ RV ++ FHG D F + Sbjct: 76 ARQFGLTDQVLAQVVTNAALDEETRQLGILVGDERVAEDLRNVQAFHGPDGNFDRSAYSY 135 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN- 198 L G+ E E+ D + +R+ + + G + ++ + E R + L+ Sbjct: 136 ALQNAGLKEAEFEDSLRQESARSILQAAVLSGTTLPDTYVNTLLGWVGETRDFTWAKLDR 195 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 + + P++ L W+++ D + PE K I+Y +E+ L+ YE Sbjct: 196 DALTTGLPVPTDEELQAWYDENIDQFTLPETKVITYAWLTPDMIVDTVEVDEQALRDAYE 255 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSK 317 + ++ PE R VE+LVF ++ EA A + G+ F + E+G ++ D +G ++ Sbjct: 256 ERHAEFNMPERRLVERLVFSSEDEAQSAADRIASGETDFEGVVAERGLAIIDTDMGDVTR 315 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + + D++F A+ G + G + V+ + F+E D+ + + + Sbjct: 316 ASLGEA--GDAVFG-AEVGAVVGPEPTNLGPALFRVNGVLAEQVTPFEEAVPDLRDALVL 372 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +A ++ + L++ LA G +++E+S+ D+ L + +A Sbjct: 373 DRARRVIEGMSQDLDDELAGGATLEELSQ-----DTDMELGQIEWSETSDTGIAGYEAFR 427 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + V D P D L DG +++ E E+V +V + W+ + E Sbjct: 428 EAAQAVQDADYPAIDD----LGDGGVFALRLDEQRDPAPAPFEDVRDEVAQLWEQDQATE 483 Query: 498 EVSSKANQLVLEYSKEGKNFRDIG-KNLGASLLTTNQ 533 + ++A +L S G +F D G S LT NQ Sbjct: 484 ALVAQAEELATAISG-GGSFEDSGLSPTQESGLTRNQ 519 >gi|22124938|ref|NP_668361.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis KIM 10] gi|45440627|ref|NP_992166.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Microtus str. 91001] gi|108808639|ref|YP_652555.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis Antiqua] gi|108811102|ref|YP_646869.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis Nepal516] gi|145600047|ref|YP_001164123.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis Pestoides F] gi|149365001|ref|ZP_01887036.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125] gi|162420506|ref|YP_001607415.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Angola] gi|165926634|ref|ZP_02222466.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936039|ref|ZP_02224609.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. IP275] gi|166010989|ref|ZP_02231887.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212996|ref|ZP_02239031.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167399316|ref|ZP_02304840.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421506|ref|ZP_02313259.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423714|ref|ZP_02315467.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468476|ref|ZP_02333180.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis FV-1] gi|218930183|ref|YP_002348058.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis CO92] gi|229838757|ref|ZP_04458916.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896089|ref|ZP_04511259.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A] gi|229899325|ref|ZP_04514468.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. India 195] gi|229901331|ref|ZP_04516453.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516] gi|270489517|ref|ZP_06206591.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|294504885|ref|YP_003568947.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003] gi|21957777|gb|AAM84612.1|AE013706_7 putative protease maturation protein [Yersinia pestis KIM 10] gi|45435484|gb|AAS61043.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Microtus str. 91001] gi|108774750|gb|ABG17269.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Nepal516] gi|108780552|gb|ABG14610.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Antiqua] gi|115348794|emb|CAL21748.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CO92] gi|145211743|gb|ABP41150.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides F] gi|149291414|gb|EDM41488.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125] gi|162353321|gb|ABX87269.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis Angola] gi|165916184|gb|EDR34791.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. IP275] gi|165921562|gb|EDR38759.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989989|gb|EDR42290.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205783|gb|EDR50263.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960425|gb|EDR56446.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051820|gb|EDR63228.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057884|gb|EDR67630.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681260|gb|EEO77354.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516] gi|229687727|gb|EEO79800.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. India 195] gi|229695123|gb|EEO85170.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701012|gb|EEO89041.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A] gi|262362950|gb|ACY59671.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D106004] gi|262366870|gb|ACY63427.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D182038] gi|270338021|gb|EFA48798.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|294355344|gb|ADE65685.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003] gi|320016339|gb|ADV99910.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 628 Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 185/392 (47%), Gaps = 22/392 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q + + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDYAAKVNDQDISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + QK+G V+ + L +++L L++ LDQ+ +GL +V Sbjct: 59 MQSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I + P F ++ F ++ +++ + + G +++ + L ++ F G + P Sbjct: 119 ESIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + + R V L+ + + A ++ L ++++ K N+ APE ++S+ Sbjct: 178 --IEVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + I ++ +++ A Y++N+ Y PE R + F + EA A LKKG Sbjct: 236 IAMDAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGA 295 Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F +A+E KS IS LG E PD A +L++KG + VI S GY Sbjct: 296 DFAVIAKE--KSTDIISRNNGGELGWLEPETTPDEVKA---ANLSEKGQLSDVIKSSVGY 350 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +I +++IKP EV ++A +++ KA Sbjct: 351 LIVRLNDIKPELVKPLSEVHDELAKKLKQEKA 382 >gi|238788012|ref|ZP_04631808.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC 33641] gi|238723960|gb|EEQ15604.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC 33641] Length = 628 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 185/388 (47%), Gaps = 14/388 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDDQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F D KF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 A + R V ++ + + A ++ L ++++ K+++ APE +IS+ Sbjct: 178 VEAQAMSA--LILQQRDVRLATIDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + KI ++ D++ A Y+++K Y PE R + F + EA A LKKG Sbjct: 236 IAMDAAAMQDKITVTEDDIAAYYDQHKSSYGQPEQRNYSVIQFKTEAEAKTALDELKKGA 295 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352 F +A+E+ + G P+ + AD + +L +KG + V+ S GY+I Sbjct: 296 DFAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++IKP EV +A Q++ KA Sbjct: 355 LNDIKPEQVKPLSEVHDALAKQVKQEKA 382 >gi|123443338|ref|YP_001007312.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090299|emb|CAL13165.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 628 Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 189/394 (47%), Gaps = 26/394 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F D KF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 S L+L Q R V L+ + + A ++ L ++++ K+++ APE Sbjct: 178 VEAQAMSELILQQ--------REVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPE 229 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 +IS+I D + KI ++ +++ A Y+++K Y PE R + F + EA A Sbjct: 230 QMKISFIAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALD 289 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346 LKKG F +A+E+ + G P+ + AD + +L +KG + V+ S Sbjct: 290 ELKKGADFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSV 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 GY+I +++IKP+ EV +A Q++ KA Sbjct: 349 GYLIVRLNDIKPAQVKPLSEVHDALAKQVKQEKA 382 >gi|89054374|ref|YP_509825.1| putative peptidyl-prolyl cis-trans isomerse D [Jannaschia sp. CCS1] gi|88863923|gb|ABD54800.1| putative peptidyl-prolyl cis-trans isomerase D [Jannaschia sp. CCS1] Length = 617 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 135/633 (21%), Positives = 267/633 (42%), Gaps = 38/633 (6%) Query: 5 IRKASRTWVAKIFLVVLF-VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 + K++ V+ +F+ +L + F+ G+S V SVG ++ + + E Sbjct: 1 MAKSAAKKVSNVFVWILMGLLFVALAGFGIGSFSGGASQVGSVGDVEITADDYFRALNNE 60 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + S V R+ G+D +IL L + A L +G+ V +IA+ Sbjct: 61 INAQSADERRAVPFAEIRARGIDAQILAGLTARAALSHEAGAMGISVGDAEVAAQIAQVQ 120 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 F F + + L ++G +E+ + + ++R + +GG+ P+ + + Sbjct: 121 AFQNTSGNFDRNTYEFVLQQQGATPREFEEDTREDVARALLQTAVIGGLTPNEIFAETIT 180 Query: 184 RFYFENRSVDYIVLNNRH----VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E R D+ L R VP IA+P++A L +++++ + + PE +RI+Y Sbjct: 181 AYQSETR--DFTRLEVREGDLTVP-IAEPTDAELAAYYDEFPERFTRPEARRITYAWIIP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKGKKFIQ 298 +EI D L+ Y+ ++Y PE R +E+LVF + E D + F Sbjct: 238 SAIMDDVEIDEDALRELYDDRIDEYVQPERRLLERLVFNSDAEVDAALAAIEAEETDFDT 297 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L ++ +L D+ LG + + + A +I + + + G + V+ + Sbjct: 298 LVADRDLTLEDVDLGEIAADDL--SDAAAAIIFADEDSELLGPVPSPLGPALFRVNAVLQ 355 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 S V F+E + D++ ++ A ++ + + +++ LA G +++E+S + L + Sbjct: 356 SSEVPFEEARDDLSAELAQEGARRQIDDMREGIDDLLASGATLEELSDGTVMT---LGTL 412 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D+ +G +AA V D P + L DG +++ E +P Sbjct: 413 DYTPASEEG--IAAYDNFRDAAVSVQDSDFP----ELLELSDGGLFALRLDEVVPPTLPP 466 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L+E+ +V + W+ + V+ +A+QLV + ++ G D+G L I R D Sbjct: 467 LDEIEAEVAEAWQATALRDAVAERASQLVAQLAQ-GATLEDLGDTAEERL-----IRRQD 520 Query: 539 NENKFFGYDGISQVF----SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 ++QVF +G V M+ P + V NS V + +S + Sbjct: 521 LLPDLPAT-TVAQVFQLEGTGDVVMI---PGADAAHIVRLDTINSGVRDAPDTSVILSIM 576 Query: 595 ----TQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 Q M D+ ++ L++ +T + +I Sbjct: 577 NQSIAQSMAVDIFEAYGQALQANAGITTNQGVI 609 >gi|283784267|ref|YP_003364132.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium ICC168] gi|282947721|emb|CBG87276.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium ICC168] Length = 624 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 142/657 (21%), Positives = 292/657 (44%), Gaps = 66/657 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L ++ L+ L+ A LDQ+ ++ L +V Sbjct: 60 NGERNRMQQQLGDQY-SELAANEGYMKTLRQQTLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF ++ + + + + G+ D Y + L + G+ ++ Sbjct: 119 QAIFSTPAFQ-VDGKFDNNHYNALVIQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + + A + + ++E++K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D +K + ++ ++Q+ Y+++++++ P+ + + EA +L K Sbjct: 234 SYIKLDAAAMQKPV--TDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDEAKAVLDALNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ + ++ D + L +KG + VI S G++I Sbjct: 292 GGDFATLAKEKSADIISACNGG-DMGWLEEATMPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL--------GTSMD 402 A + +++P+ EV DIA KVK++ K L+ F AL + Sbjct: 351 ARLDDVQPAKVKPLSEVHDDIA---------AKVKQE-KALDAFFALQQKVSDAANNDTE 400 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDG 461 ++ E+ + + +D +E+ P + + + G++ ++ + DG Sbjct: 401 SLAGAEQAAGVKAVETGWFSRDSLPEELNFKPVSDAIFDGSLVGENGTPGRNSDIITVDG 460 Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN---F 517 ++V +I E + L +V V + K K A++ A +L++E K GK Sbjct: 461 DRVFVLRISEHKAEAVKPLADVKDQVTERVKYDKAAQQAKLDAEKLLVEL-KAGKGAEAM 519 Query: 518 RDIGKNLGA--SLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--S 570 + G + GA +L TNQ D +SQ S P + + + N + + Sbjct: 520 KAAGLSFGAQKTLSRTNQ-------------DPVSQAAFALSLPAKDKPGYGMANDMQGN 566 Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 VV + K G P +K + +TQ + + +++++ L+ + + + D + Q+ Sbjct: 567 VVVLALDEVKAGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDAMEQQ 623 >gi|77360982|ref|YP_340557.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D) [Pseudoalteromonas haloplanktis TAC125] gi|76875893|emb|CAI87114.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Pseudoalteromonas haloplanktis TAC125] Length = 633 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 143/618 (23%), Positives = 264/618 (42%), Gaps = 64/618 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ S+ +AK+ L + + F + G+ L G +T V V K+ + F Sbjct: 1 MLEKIREGSQGPIAKVILGAVILSFALAGIGSYL----GQTTEQPVAEVNGIKISQTEFN 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E G + Q+ G + ++ + + ++D LV Q ++GL Sbjct: 57 RAFQNERGRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQTQLAAELGLRVSDES 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F ++ F++D ++ + + + ++ K ++R+ +V G Sbjct: 117 VRQTILELPYFKIGES-FNNDRYLQVIRQMNFQPDSFREYLRKDMTRSQLVSAVAGSDFA 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L+ A + RS+DY+V+N + S + ++E + +PE ++Y Sbjct: 176 LKNELESAIALQQQTRSIDYLVVNKEAMQDSVVVSEQEIADYYELNSGQFLSPERLSVNY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------F 287 I + ++ D+++A YE++K +Y PE R V ++ N ++ D A Sbjct: 236 IELKAQDI-TVASVTEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLL 294 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY------IPDVSLADSIFSLAKKGDFTPV 341 L +G F +LAE S DI G + + D D+ F+L KGD++ V Sbjct: 295 AQLNQGADFAELAE---SSSDDIVSGEMGGDLEWIERDVMDPVFEDAAFALENKGDYSDV 351 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 I FGY I +++++ ++ +VK D+ ++ + +EKV Y++ E AL Sbjct: 352 IASEFGYHIIKLTDLQAQQVKAYDDVKADLRAEL---EKAEKVDAFYEKQTEMAALAF-- 406 Query: 402 DEISRREKIVSIDLPLVD---FAGKDVKGKEVAAI-----PYKEQLLFRVFGKDDPLS-- 451 EIS R LVD AG ++K + A+ P + D L Sbjct: 407 -EISDR---------LVDAAEAAGVEIKSTPLVALNELPEPLNSPAVITALTSVDLLEDK 456 Query: 452 -KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + L + + V++ E PA + L +V +K KT+ KA L E Sbjct: 457 VNSELIELGNEHVIVVRVNEHEPAATKALSDVSEQIKASLVNEKTSALAKEKARTLFAEV 516 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF--SGPVE--MVKCFPIE 566 + GK+ D+ LT Q ++ ++ ++Q F + P + +V+ + Sbjct: 517 -QAGKSLNDVAAEQN---LTVRQEAQLTRQSYTVSPAIVTQAFKMAHPTDSAIVELVNLN 572 Query: 567 NGLSYVVF--KVTNSKVG 582 NG + +V VTN++V Sbjct: 573 NGDAAIVALKSVTNAEVA 590 >gi|149913756|ref|ZP_01902288.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. AzwK-3b] gi|149812040|gb|EDM71871.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. AzwK-3b] Length = 613 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 109/517 (21%), Positives = 216/517 (41%), Gaps = 23/517 (4%) Query: 9 SRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 SRT W+ L++ F L A TV VG ++ + + + + E+ Sbjct: 7 SRTFVWILMGLLIIGLAGFGATNLGGAF------GTVARVGTAEIRTNDYARALQNEIRA 60 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + G ++ ++AR +G+ ++L LV+ A+ D +G+ + +I P F Sbjct: 61 REAERGGAISFQQAREMGIPDQVLAQLVTTASFDHEATRLGVSIGDDNLRQQILGIPAFQ 120 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 G D F + + L R G+ E E+ D + +R V + G+ + + + Sbjct: 121 GIDGNFDREAYAFTLDRIGLTEAEFEDDMREETARALVQSAVMAGVTVPDAYFETLLTYL 180 Query: 187 FENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E R V + VL + + P+ L + + ++ PE KR++Y Sbjct: 181 GEERDVTWAVLERADLDTGLPTPTEEDLRSYHQGNLPSFTTPETKRLTYAWLTPEMIIDT 240 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQG 304 +E+ L+ YE+ +++ PE R VE+L F + A+ A + G F L ++G Sbjct: 241 VEVEEQSLRDAYEERIDEFNQPERRLVERLAFADTGTAETAIAGINDGSTDFETLVAQRG 300 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 L D+ LG ++E D+ A + A+ GD + G + ++ I + +F Sbjct: 301 LDLVDVDLGDVARE---DLGTAAEVVFAAQAGDVVGPVETDLGPALFRINAILSAQETAF 357 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +E + + + + +A + R+ + LA G ++++++ ++ +D+ Sbjct: 358 EEAEPLLRDTLAADRARRVIDSRIDRIADLLAGGATIEDLAAE---TDMEQGQIDWHPGV 414 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 +G + A Q + D P L DG +++ + + L+EV Sbjct: 415 TEG--IGAYDAFRQAAQAITEDDFP----DVEQLGDGGIFAMRLDRVVDPEIQPLDEVRD 468 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 V W+ T ++ KA LV + + G++F D+G Sbjct: 469 AVLAGWRQQATVAALTEKAEPLVADL-RNGRDFADLG 504 >gi|84515600|ref|ZP_01002962.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53] gi|84510883|gb|EAQ07338.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53] Length = 613 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 110/507 (21%), Positives = 231/507 (45%), Gaps = 26/507 (5%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W+ ++V F GL+ + T+ +VG + + +++ + Q++ +S + Sbjct: 12 WIIVGVVLVGLAGFGTGGLTGNI------RTLGTVGDKDITVAAYQRNLDQQIRALSAQF 65 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G ++ ++A++ G+D++ L +V TLD +G+ A V+ I+ F Sbjct: 66 GTQISFQQAQAFGIDRQALSQVVQTRTLDNEAARMGISAGDLAVFDRISAIGAFQSA-GG 124 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ D + L + G +E E+ + L+RT + V G+ + D R+ E R Sbjct: 125 FNRDTYRLVLQQSGQSESEFEAEIREDLARTLLQAAIVSGVPGAAASADALVRYVAEARD 184 Query: 192 VDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 V + ++ + A + ++A +T ++E D + PE + I+Y + ++E+++ Sbjct: 185 VTVLRVSADMLTAPVPGATDADITAFYEANGDEFLLPEAREITYAWMTPAMIQDQMEVTD 244 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSD 309 ++ Y+ + PE R VE+L + + A A L G F L E+G +L+D Sbjct: 245 LAIETLYQDRIADFVQPERRLVERLNYADPAAAQLAGGRLASGDATFDALVTERGLTLAD 304 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 + +G ++ +P + AD++F+ A GD S G + V+ + + V+ E Sbjct: 305 VDMGDLGRDELP-ANTADAVFT-ATPGDVVGPFPTSLGAALFRVNAVLNAQEVTLDEASD 362 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 D+ ++ A + +D+ R+ + LA G ++++++ R +V L + + G Sbjct: 363 DLRAELAAEAARSVINDDFDRITDLLAGGATLEDLAERTDLV---LGQISWTPDVTDG-- 417 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVA---LPDGSYMWVQIKESIPARDRKLEEVLTDV 486 +AA Y FR + LS+ A L DG +++ PAR L+++ DV Sbjct: 418 IAA--YDN---FRAAAE--ALSEGAFPALEVLSDGGVFALRLDSVTPARVPPLQDIRADV 470 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKE 513 W+ + + ++A ++ + + + Sbjct: 471 AARWQLQAQQDALLARAAEIAADLTAD 497 >gi|238795538|ref|ZP_04639053.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC 43969] gi|238720657|gb|EEQ12458.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC 43969] Length = 628 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 145/647 (22%), Positives = 291/647 (44%), Gaps = 61/647 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKILLALIMLSFILTGVGSYL--IGGSNDYAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E G + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F DNKF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 ------SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 S L+L Q R V ++ + + A ++ L ++++ K+++ APE Sbjct: 178 IEAQAMSELILQQ--------REVRLATVDLKALQAQQKVTDEELKAYYDQNKNSFIAPE 229 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++S+I D + KI ++ +++ A Y++++ Y PE R + F + EA A Sbjct: 230 QMKVSFIAMDAAAMQDKITVTEEDIAAYYDQHRSSYTQPERRNYSVIQFKTEAEAKVALD 289 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346 LKKG F +A+E+ + G P+ + AD + +L++KG + V+ S Sbjct: 290 ELKKGADFAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLSEKGQLSDVVKSSV 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EI 404 GY+I +++IKP EV +A Q++ EK + Y L++ ++ + D + Sbjct: 349 GYLIVRLNDIKPEQVKPLSEVHDALAKQVK----QEKAVDAYYALQQKVSEAATSDNESL 404 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGS 462 + E+ D+ +D EV P Q +F + G++ + V DG Sbjct: 405 ASAEEAAGTKAKQTDWFTRDSIPTEVNFKPVA-QAIFDGGLVGENGAPGSNSDVITVDGD 463 Query: 463 YMWV-----QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 +V E I D+ ++V VK+ + AE+++ + +L K+GK Sbjct: 464 RAFVIRIDGHKPEGIEPFDQVRDQVAELVKR-----QKAEQLARVDGEKILTALKQGKG- 517 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--------ENGL 569 + K G S ++R ++++ + +F+ P K P+ +N + Sbjct: 518 EEAMKAAGISFGEKKTLSRAPDDDQL-----VQTIFTLPHPQ-KDQPVYGLSQDREDNIV 571 Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + VT K+ P E FI+ + + + D+++A L+ Q ++ Sbjct: 572 LIELLSVTPGKL-PEGEMKTFIAKMQEGSSGVTFDALMANLRKQATI 617 >gi|238764856|ref|ZP_04625797.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC 33638] gi|238696963|gb|EEP89739.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC 33638] Length = 627 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 183/387 (47%), Gaps = 14/387 (3%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSW 60 ++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + Sbjct: 1 MDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRGQLEQAV 58 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPS 175 I ++P F D KF + ++ + R G ++ + L ++ F G + P Sbjct: 119 AIRQAPYFQ-TDGKFDNSKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP- 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V L+ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 177 -IEAQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFI 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D + KI I+ +++ A YE++K Y PE R + F + EA A LKKG Sbjct: 236 AMDAAAMQDKITITEEDIAAYYEQHKSTYTQPEQRNYSVIQFKTEAEAKTALDELKKGAD 295 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHV 353 F +A+E+ + G P+ + AD + +L +KG + V+ S GY+I + Sbjct: 296 FAAMAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVRL 354 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKA 380 ++IKP+ EV +A Q++ KA Sbjct: 355 NDIKPAQVKPLSEVHDALAKQVKQEKA 381 >gi|73666959|ref|YP_302975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str. Jake] gi|72394100|gb|AAZ68377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str. Jake] Length = 630 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 139/652 (21%), Positives = 280/652 (42%), Gaps = 65/652 (9%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 S+ K L++L + + F + + V +G +K+ + N++ EL Sbjct: 3 SKGLFVKPLLIILVCSLVFIAFGTSFFPGNFNNDKYVAKIGHEKLSLQDYTNAYHDELRY 62 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 I Q + + E+ + +L+ L+ L +F + + L+ + I F Sbjct: 63 IQQILNRPLTEEQIAQFNIKLSVLNKLIENKVLTKFTDSLNLKVGEKSILSHIKSIKFFQ 122 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLDQ 181 ++ F F L+ G+ E+ YI+ K ++ G + + + L+ Q Sbjct: 123 DENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPVAMLMSCLFSGTQNTYVKYHPELIKQ 182 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKD--NYRAPEYKRISYIL 236 + + R++D I ++ P+ D PS L + +E+ + N PE + I Y+ Sbjct: 183 ILQNLHQARTIDLIEIS----PSTNDISVPSLDELKKLYEEKRKSGNLTFPENRVIEYLT 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +I ++ +++ E + + E R + LVF + EA+ A ++L +G F Sbjct: 239 INYKNFINQINVTQEDIDNEIKTEE----LDEQRDILNLVFSTKNEAEAALKALNEGTDF 294 Query: 297 IQLAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + +D I+L + K +P+ + +FSL K+GD +P++H FG+ I + + Sbjct: 295 NDVVTNIAHTTTDNITLNNIVKNTLPN-DIRGKVFSL-KEGDISPILHSMFGWHIIKIKS 352 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I T QE+ + IA ++ KA + + + + + + G S++EI++ + SI Sbjct: 353 IHKISTEDLQELSEKIAQNIKKKKAISLLTTEIESINDKINNGASINEIAKLYNL-SIKT 411 Query: 416 PLVDFAGKDVKGKEV-AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 D +GKD+ G ++ + + ++ F L+K D + V + + P+ Sbjct: 412 INTDISGKDLSGNKIKMSESNADAIILAAFSAQ--LNKPSNFTDNDDYFFSVNVTKVEPS 469 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R++ +E + +W+ ++++S ++V++ K G + N+ LL +NQ Sbjct: 470 REKTFDESKEQLVYEWQNDLKSQKLSKLTQEVVVKL-KSGIDIH----NIDGVLLNSNQ- 523 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV-KCFPIENG-LSYVVFKVTNSKVGPVQEKDKFIS 592 M N D Q + P ++V + F ++ G +S TNS E+ I+ Sbjct: 524 --MVYRNSVAAVDNPGQNY--PTDLVDEIFNLKKGEISKSYQSSTNS-----SEQKMLIA 574 Query: 593 YLTQMMNKD---------------------LLDSVIAYLKSQYSVTVHDNLI 623 L + N D L + +I YL +YSV ++ NLI Sbjct: 575 ILKDIKNADQVSNVDFKNIQEKIANDNLESLKNQLITYLTKKYSVKINQNLI 626 >gi|190570945|ref|YP_001975303.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357217|emb|CAQ54634.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 599 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 135/577 (23%), Positives = 264/577 (45%), Gaps = 68/577 (11%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G V+ E+ + + D +L+ L+ L I ++GL+ + I + F + Sbjct: 63 GSDVSKEQVKKLKYD--LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGE 120 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-------DQAKR 184 F H+ F L I EKEYI+ K+L MF+ + N + +Q + Sbjct: 121 FDHNKFHQTLNSLHITEKEYIEKLEKILPAM----MFMTSLFKDNYPVTFGEGVDEQIYK 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 ++ R VD + + + + +P + L +E+ K N+ PEY+ YI D E Sbjct: 177 NRYQTRVVDIVKITEDAITDVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFED 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +I IS++E+ + E + K R + ++FP +++A+ A ++L++ K F Q+ EE Sbjct: 237 QIRISDEEVDSIIEHQELK----NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEF 292 Query: 304 GK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 K L + + + +K+++P+ ++ + +F+L K G+ + V+ +FG+ + V +I Sbjct: 293 NKVKLDETRVNNITKDFLPE-NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDE 350 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 ++KKDI + + K+ EKV + ++ + G +++EIS + + VD +G Sbjct: 351 DLVDLKKDIRSVLTNQKSFEKVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASG 410 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 KD G EV + +F ++ K + + D + + V+I + +P + + EE Sbjct: 411 KDQSGNEVGN---SSDFISFIFSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEES 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 K W++ E + ++ ++ ++ D+ + G L+ QI R + +N Sbjct: 466 RESAIKLWRSEFIKERMFKMGQEVAVQLREKT----DLEEMQGIKLVKGQQIQR-NEQNY 520 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-FISYLTQMMNK- 600 F + I ++F+ K TNS P+Q ++ I L QM + Sbjct: 521 PFSF--IEEIFN-------------------MKTTNSVTDPIQYNNEIIIGVLKQMHSSN 559 Query: 601 ---DLLDS-----------VIAYLKSQYSVTVHDNLI 623 ++LD+ +I+YLKS+Y V V+ +I Sbjct: 560 GKLNMLDTGKRVMISLKEQLISYLKSKYRVEVNHAMI 596 >gi|310815590|ref|YP_003963554.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium vulgare Y25] gi|308754325|gb|ADO42254.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium vulgare Y25] Length = 612 Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 115/509 (22%), Positives = 224/509 (44%), Gaps = 24/509 (4%) Query: 24 PFLIWG---LSDALFSVSG---SSTVVSVGR---QKVPFSSFINSWKQELGMISQKIGFV 74 PF+ G ++ L G S TV +VG+ + V + + +Q L + Q G Sbjct: 9 PFVWAGFILIAGGLMITGGLGLSGTVRNVGKVGDKTVTALEYQGAMQQGLQQMRQMFGNT 68 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + + + +G + + LV L+ IGL V +I + F G FS Sbjct: 69 LTFAQFQQMGGEAMAREQLVQERALENEASRIGLSVGDLYVARQIQQISAFQGLTGGFSL 128 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + + L + G+ E+++ D ++ + G + + + RF E R + + Sbjct: 129 ETYRAALRQVGLAERQFEDAQRDAIASGLLSSAIAGDLTMPAIYAETLARFRGERRVITW 188 Query: 195 IVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + +V I P+ L + + + D + PE +R++Y + IE+S DE+ Sbjct: 189 AAVTAANVTTDIPAPTEEDLQAYHDSHPDVFTTPETRRVTYAALTPEMAAETIEVSEDEI 248 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312 +A Y++ + Y PE R V++L F N +A A ++ G+ F LA E G SL +I Sbjct: 249 RALYDQRIDSYIVPERRIVDRLTFNNDADATAALARIQSGEITFTDLANEMGFSLEEIDQ 308 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G ++ + + A +F+ A GD + FG V+ V+ + + V+ + Sbjct: 309 GEMTEAALGEGGAA--VFA-AATGDTVGPVPSRFGPVLYRVNVDLAAEETPYDAVRDTLR 365 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 N++ ++A + ++ L + +A G +++I + S L D+ + +G A Sbjct: 366 NELAASRAGRVIAQEKASLTDLVAGGAQIEDIVNLSDLRSGTL---DWQEGNTEGM-AAY 421 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 P++ + G + V LPDG +++ E +P R + L+E+ + W+ Sbjct: 422 EPFRAAIAAAEIGAFPAI-----VDLPDGGIFVLRLDEIVPPRVQTLDEMRAYAEVMWRF 476 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 T + V+++A +L E + G F ++G Sbjct: 477 QATQDAVATEAARLA-EAVEGGATFEELG 504 >gi|82775652|ref|YP_401999.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella dysenteriae Sd197] gi|81239800|gb|ABB60510.1| putative protease maturation protein [Shigella dysenteriae Sd197] Length = 623 Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 143/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDNLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA ++R EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVR----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|157159968|ref|YP_001457286.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli HS] gi|312970538|ref|ZP_07784719.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70] gi|157065648|gb|ABV04903.1| peptidylprolyl isomerase [Escherichia coli HS] gi|310337187|gb|EFQ02325.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70] Length = 623 Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 143/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V QK+ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQKISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|238754239|ref|ZP_04615596.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473] gi|238707486|gb|EEP99846.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473] Length = 627 Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 154/647 (23%), Positives = 287/647 (44%), Gaps = 61/647 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + S Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGGYL--IGGSNDYAAKVNGQEISRAQLEQS 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E + Q++G V+ L ++IL L++ LDQ+ + +GL A +V Sbjct: 59 MQSERSRLQQQLGEQFSVLAGNEGYMQQLRQQILGQLINNMLLDQYAKQLGLSASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I + P F DNKF ++ ++ + R G ++ + L ++ F G P Sbjct: 119 DSIRQLPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQIQRQQLINQQLLQAFSETGFALP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + R V L+ + + A ++ L ++E+ ++++ APE +IS+ Sbjct: 178 AEA--QAMSELILQQREVRLATLDLKALQAKQTVTDEELKAYYEQNRNSFIAPEEMKISF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D ++KI ++ +++ YE+++ + PE R + F N+ +A A LK G Sbjct: 236 IEMDAAAMQEKITVTEEDIATYYEQHRSSFTQPERRNYSVIQFKNEADAKTALAELKNGA 295 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + G P+ + AD + +L +KG + V+ S GY+I Sbjct: 296 DFTTLAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 +++IKP EV +A +++ EK + Y L++ ++ + D E + S Sbjct: 355 LNDIKPEQVKPLSEVHDALATKVK----QEKAVDAYYALQQKVSEAATSD----NESLAS 406 Query: 413 IDLPLVDFAGKDVKGKEVA-----AIP----YKE--QLLFR--VFGKDDPLSKDHTVALP 459 + + AG K K+ A A+P YK Q +F + G++ + V Sbjct: 407 AE----EAAGS--KAKQTAWFTRDAVPAQLNYKPVIQAIFEGALVGENGAPGSNSDVITV 460 Query: 460 DGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 DG +V +I P + ++V V + K K AE+ + + +L K+GK Sbjct: 461 DGDRAFVIRIDGHKPEGVQPFDQVRDQVAELVKRQK-AEQQARVDGEKILTALKQGKG-E 518 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPI--------ENGL 569 + K G S I R G D ++Q VF+ P V+ P+ +N + Sbjct: 519 EAMKAAGLSFGEKKMIARAP------GDDQLAQTVFALPHPQVEK-PVYGLSQDRQDNIV 571 Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + VT K+ P E F + + + +N LD++IA L Q ++ Sbjct: 572 LIELLSVTPGKL-PEDEMPNFTTKMAEGINGIALDALIANLHKQATI 617 >gi|213019460|ref|ZP_03335266.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994882|gb|EEB55524.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 578 Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 135/577 (23%), Positives = 264/577 (45%), Gaps = 68/577 (11%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G V+ E+ + + D +L+ L+ L I ++GL+ + I + F + Sbjct: 42 GSDVSKEQVKKLKYD--LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGE 99 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-------DQAKR 184 F H+ F L I EKEYI+ K+L MF+ + N + +Q + Sbjct: 100 FDHNKFHQTLNSLHITEKEYIEKLEKILPAM----MFMTSLFKDNYPVTFGEGVDEQIYK 155 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 ++ R VD + + + + +P + L +E+ K N+ PEY+ YI D E Sbjct: 156 NRYQTRVVDIVKITEDAITDVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFED 215 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +I IS++E+ + E + K R + ++FP +++A+ A ++L++ K F Q+ EE Sbjct: 216 QIRISDEEVDSIIEHQELK----NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEF 271 Query: 304 GK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 K L + + + +K+++P+ ++ + +F+L K G+ + V+ +FG+ + V +I Sbjct: 272 NKVKLDETRVNNITKDFLPE-NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDE 329 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 ++KKDI + + K+ EKV + ++ + G +++EIS + + VD +G Sbjct: 330 DLVDLKKDIRSVLTNQKSFEKVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASG 389 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 KD G EV + +F ++ K + + D + + V+I + +P + + EE Sbjct: 390 KDQSGNEVGN---SSDFISFIFSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEES 444 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 K W++ E + ++ ++ ++ D+ + G L+ QI R + +N Sbjct: 445 RESAIKLWRSEFIKERMFKMGQEVAVQLREKT----DLEEMQGIKLVKGQQIQR-NEQNY 499 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-FISYLTQMMNK- 600 F + I ++F+ K TNS P+Q ++ I L QM + Sbjct: 500 PFSF--IEEIFN-------------------MKTTNSVTDPIQYNNEIIIGVLKQMHSSN 538 Query: 601 ---DLLDS-----------VIAYLKSQYSVTVHDNLI 623 ++LD+ +I+YLKS+Y V V+ +I Sbjct: 539 GKLNMLDTGKRVMISLKEQLISYLKSKYRVEVNHAMI 575 >gi|218693904|ref|YP_002401571.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 55989] gi|218350636|emb|CAU96328.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 55989] Length = 623 Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 143/652 (21%), Positives = 287/652 (44%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L S G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIS-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|332341805|gb|AEE55139.1| peptidyl-prolyl cis-trans isomerase PpiD [Escherichia coli UMNK88] Length = 623 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 287/652 (44%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P ++K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|330859944|emb|CBX70273.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica W22703] Length = 628 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 184/388 (47%), Gaps = 14/388 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F D KF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 A + R V L+ + + A ++ L ++++ K+++ APE +IS+ Sbjct: 178 VEAQAMSA--LILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG Sbjct: 236 IAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGA 295 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352 F +A+E+ + G P+ + AD + +L +KG + V+ S GY+I Sbjct: 296 DFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ IKP+ EV +A Q++ KA Sbjct: 355 LNGIKPAQVKPLSEVHDALAKQVKQEKA 382 >gi|332160753|ref|YP_004297330.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664983|gb|ADZ41627.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 628 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 184/388 (47%), Gaps = 14/388 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F D KF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 A + R V L+ + + A ++ L ++++ K+++ APE +IS+ Sbjct: 178 VEAQAMSA--LILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG Sbjct: 236 IAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGA 295 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352 F +A+E+ + G P+ + AD + +L +KG + V+ S GY+I Sbjct: 296 DFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ IKP+ EV +A Q++ KA Sbjct: 355 LNGIKPAQVKPLSEVHDALAKQVKQEKA 382 >gi|318604634|emb|CBY26132.1| peptidyl-prolyl cis-trans isomerase ppiD [Yersinia enterocolitica subsp. palearctica Y11] Length = 628 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 184/388 (47%), Gaps = 14/388 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E + Q++G + + + L +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F D KF ++ ++ + R G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 A + R V L+ + + A ++ L ++++ K+++ APE +IS+ Sbjct: 178 VEAQAMSA--LILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG Sbjct: 236 IAMDAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGA 295 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352 F +A+E+ + G P+ + AD + +L +KG + V+ S GY+I Sbjct: 296 DFAAIAKEKSTDIISRKNGGELGWLEPETT-ADELKQANLTEKGQLSDVVKSSVGYLIVR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ IKP+ EV +A Q++ KA Sbjct: 355 LNGIKPAQVKPLSEVHDALAKQVKQEKA 382 >gi|56416723|ref|YP_153797.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries] gi|222475088|ref|YP_002563503.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Florida] gi|56387955|gb|AAV86542.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries] gi|222419224|gb|ACM49247.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Florida] Length = 670 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 143/644 (22%), Positives = 280/644 (43%), Gaps = 52/644 (8%) Query: 12 WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 +V + VL FV F+ +G + V VG + + +++ EL I Sbjct: 46 FVGAVLAAVLCAFV-FVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIES 104 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + ++ + + G+ + L +V L++F +++ L + + I P+F K Sbjct: 105 LVHQKLSEDDIKRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQDKS 164 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----------RTDVVGMFVGGMRPSNLL 178 K F LA G+ E YI L +V + G L Sbjct: 165 GKLDEQRFKDLLADAGMTEASYIGKVRDSLPAFVLSECIFPRSGEVYSQYYDGFAQDVL- 223 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYIL 236 R ++R+VD + ++ V + P+++ L + + N PEY+ Y++ Sbjct: 224 -----RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMI 278 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + ++ SNDE+++E KN E + + R V LVFP++ EA A++++K+GK F Sbjct: 279 VSEDDALDEVTASNDEVESEI-KNSELH---DQRDVLNLVFPSESEASAAYKAIKEGKAF 334 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + ++ G ++ +++L + +KE +P + + +++F L +G+ + V G+ + + + Sbjct: 335 EAVVKDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSK 392 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSID- 414 P +++K+ +A ++ KA E ++ E ++ G TS E++ K +I Sbjct: 393 HPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGA 452 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPD------GSYMWVQ 467 L D G+D GK + Y E+ F + G PL+ V P +Y V Sbjct: 453 LKDFDSNGQDSTGK---SHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAYFSVI 509 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + P+R R +E + + WK E+ A+ L + K G+N G +G Sbjct: 510 VTGVTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGEN---PGSAVGIV 565 Query: 528 LLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---G 582 I+R++ + Y D + QVF + V I+ G + +F T + G Sbjct: 566 TKKNENISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANK-IFIATLKDIKTPG 624 Query: 583 PVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 V EK+ +F ++ T + ++++L ++Y V ++ L++ Sbjct: 625 QVNEKELKEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 668 >gi|260866602|ref|YP_003233004.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str. 11128] gi|257762958|dbj|BAI34453.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str. 11128] gi|323178290|gb|EFZ63868.1| PPIC-type PPIASE domain protein [Escherichia coli 1180] Length = 623 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 141/654 (21%), Positives = 285/654 (43%), Gaps = 60/654 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + ++ L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSLYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524 +I E P + L +V VK + K ++ A +L+ L+ K + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573 G + + G D ISQ F+ P P ++ SY V+ Sbjct: 527 GEPKILSRS-----------GRDPISQAAFTLP------LPAKDKPSYGMATDMQGNVVL 569 Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300924168|ref|ZP_07140160.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1] gi|301049648|ref|ZP_07196597.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1] gi|300298585|gb|EFJ54970.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1] gi|300419621|gb|EFK02932.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1] Length = 623 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-GMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|315499883|ref|YP_004088686.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis excentricus CB 48] gi|315417895|gb|ADU14535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis excentricus CB 48] Length = 642 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 118/558 (21%), Positives = 245/558 (43%), Gaps = 15/558 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ R+ +++ KI + L + F ++G+ D LFS S VV G ++ + + Sbjct: 1 MISSFRQFTKSLTFKILMAALILSFAVFGMHD-LFSRPSSRNVVDAGDRQTTTDDYRRQF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q Q+ G + E A GL +I++ L ++ ++ +GL V +IA Sbjct: 60 DQWKTGAEQQSGQTLTYEDAVKQGLHVRIMEELADMDSVSAWLVKVGLRPSAKVVTDQIA 119 Query: 121 RSPLFHGK-DNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + P+F KF + LA + ++E ++ + ++ + V G++P + Sbjct: 120 KYPIFFDSITGKFDKAKYQQELATQMKMSETKFEQIISDDIANRQFIEASVAGLKPPRIY 179 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 F E R +V+ ++ P++ L ++++ K+ R PE ++ + + F Sbjct: 180 AALQSAFASETRDTTLLVVTPDNIEKPGQPTDVELKKFYDDNKERLRRPELRQFTVVSFA 239 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + K+ + EL+ YE ++ +PE RT Q+ P+QK A+ Q+L+ G Sbjct: 240 PGDFASKVTVDEAELKKLYEFRRDTLSNPETRTFVQVTVPDQKAAEAVAQALRSGTDPKT 299 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A+ ++ I+ + K + D +AD+ F+L K+G+ + I GS G + VS I Sbjct: 300 AAKANKGTV--IAYDAKPKTAVADAKVADAAFAL-KQGEVSGPIQGSLGLAVVKVSGITA 356 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + F V+ + + + KA + + + E+ + G +++ + I+LP + Sbjct: 357 ASVTGFDTVRGQLEAEYKADKAKDLAYKASEVFEKERSAGADFLAAAQKAGVRVINLPPM 416 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA-LPDGSYMWVQIKESIPARDR 477 G+ G+ P +L F D P + V L +G Y +++ E +P+ Sbjct: 417 TAEGQMGNGQPFQYAP----ILKAAF--DQPKGGETDVTELGNGEYFALRVNEVLPSEVP 470 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L+ + + + W+ + V++K+ + K G++ + ++G + T + R Sbjct: 471 ALDTIKPQMIQAWQQKTAGDRVAAKSEEAAARLRK-GESLEAVASSMGLKVETRAGLARQ 529 Query: 538 DNENKFFGYDGISQVFSG 555 + G + ++FS Sbjct: 530 TAPQQ-VGPELTGRIFSA 546 >gi|300997370|ref|ZP_07181710.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1] gi|300304189|gb|EFJ58709.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWVEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|209917658|ref|YP_002291742.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli SE11] gi|218553008|ref|YP_002385921.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli IAI1] gi|293418512|ref|ZP_06660947.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088] gi|300818227|ref|ZP_07098438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1] gi|209910917|dbj|BAG75991.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11] gi|218359776|emb|CAQ97317.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli IAI1] gi|291325040|gb|EFE64455.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088] gi|300529118|gb|EFK50180.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1] gi|323184728|gb|EFZ70099.1| PPIC-type PPIASE domain protein [Escherichia coli 1357] gi|323945347|gb|EGB41403.1| ppic-type ppiase domain-containing protein [Escherichia coli H120] gi|324016698|gb|EGB85917.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 141/654 (21%), Positives = 284/654 (43%), Gaps = 60/654 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524 +I E P + L +V VK + K ++ A +L+ L+ K + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573 G + + G D ISQ F+ P P ++ SY V+ Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569 Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|323976074|gb|EGB71167.1| ppic-type ppiase domain-containing protein [Escherichia coli TW10509] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 141/652 (21%), Positives = 287/652 (44%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ D+A +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P ++K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEEQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|281177612|dbj|BAI53942.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300903291|ref|ZP_07121219.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1] gi|301301592|ref|ZP_07207727.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1] gi|300404586|gb|EFJ88124.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1] gi|300843089|gb|EFK70849.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1] gi|315256269|gb|EFU36237.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QTAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|293413696|ref|ZP_06656345.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185] gi|291433754|gb|EFF06727.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRARYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKQKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|323191361|gb|EFZ76624.1| PPIC-type PPIASE domain protein [Escherichia coli RN587/1] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGLMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|218549891|ref|YP_002383682.1| peptidyl-prolyl cis-trans isomerase [Escherichia fergusonii ATCC 35469] gi|218357432|emb|CAQ90071.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia fergusonii ATCC 35469] Length = 638 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 188/394 (47%), Gaps = 28/394 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 16 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 74 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ D+ L +V Sbjct: 75 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVK 133 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + + L + G++ D Y + L + G+ ++ Sbjct: 134 QAIFATPAFQ-VDGKFDNSRYNAILNQMGMS----ADQYAQALRNQLTTQQLINGIAGTD 188 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ S+A +T +++++K+N+ PE R+ Sbjct: 189 FMLKGETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRV 248 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI+ D ++ +S+ ++QA Y+++++++ P+ + + EA +L Sbjct: 249 SYIMLDAANIQQP--VSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNN 306 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA+E KS IS LG P L D+ L KG + VI S Sbjct: 307 GGDFAELAKE--KSADIISARNGGDLGWLEDSTTPQ-ELKDA--GLKDKGQLSGVIKSSV 361 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 G+++ + +++P+ + EV+ DIA +++ KA Sbjct: 362 GFLVVRLDDVQPAKVKTLAEVRDDIAAKVKHEKA 395 >gi|215485522|ref|YP_002327953.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O127:H6 str. E2348/69] gi|215263594|emb|CAS07924.1| peptidyl-prolyl cis-trans isomerase D (rotamase D) [Escherichia coli O127:H6 str. E2348/69] Length = 623 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKNLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|16128426|ref|NP_414975.1| periplasmic folding chaperone, has an inactive PPIase domain [Escherichia coli str. K-12 substr. MG1655] gi|26246452|ref|NP_752491.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli CFT073] gi|74311016|ref|YP_309435.1| peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss046] gi|82542929|ref|YP_406876.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii Sb227] gi|89107311|ref|AP_001091.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12 substr. W3110] gi|91209515|ref|YP_539501.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89] gi|110640702|ref|YP_668430.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 536] gi|117622701|ref|YP_851614.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli APEC O1] gi|170021186|ref|YP_001726140.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli ATCC 8739] gi|170080027|ref|YP_001729347.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli str. K-12 substr. DH10B] gi|188496348|ref|ZP_03003618.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638] gi|191173673|ref|ZP_03035197.1| peptidylprolyl isomerase [Escherichia coli F11] gi|193067528|ref|ZP_03048495.1| peptidylprolyl isomerase [Escherichia coli E110019] gi|218557351|ref|YP_002390264.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli S88] gi|218688305|ref|YP_002396517.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ED1a] gi|218703725|ref|YP_002411244.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMN026] gi|227884548|ref|ZP_04002353.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 83972] gi|237707564|ref|ZP_04538045.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA] gi|238899729|ref|YP_002925525.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli BW2952] gi|256023940|ref|ZP_05437805.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia sp. 4_1_40B] gi|293403562|ref|ZP_06647653.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412] gi|293408591|ref|ZP_06652430.1| conserved hypothetical protein [Escherichia coli B354] gi|298379174|ref|ZP_06989055.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302] gi|300900512|ref|ZP_07118679.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1] gi|300918176|ref|ZP_07134783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1] gi|300947906|ref|ZP_07162054.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1] gi|300958009|ref|ZP_07170173.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1] gi|300988004|ref|ZP_07178484.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1] gi|301025663|ref|ZP_07189181.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1] gi|301330692|ref|ZP_07223294.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1] gi|301647367|ref|ZP_07247179.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1] gi|306813091|ref|ZP_07447284.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli NC101] gi|307137086|ref|ZP_07496442.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli H736] gi|307312181|ref|ZP_07591817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W] gi|309794826|ref|ZP_07689247.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7] gi|312964534|ref|ZP_07778790.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75] gi|331640961|ref|ZP_08342096.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H736] gi|331651379|ref|ZP_08352404.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M718] gi|331656498|ref|ZP_08357460.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA206] gi|331661822|ref|ZP_08362745.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA143] gi|331681836|ref|ZP_08382469.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H299] gi|83288412|sp|P0ADY2|PPID_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|83288413|sp|P0ADY1|PPID_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|26106850|gb|AAN79035.1|AE016756_218 Peptidyl-prolyl cis-trans isomerase D [Escherichia coli CFT073] gi|1580712|dbj|BAA11645.1| YbaU [Escherichia coli W3110] gi|1773125|gb|AAB40197.1| similar to H. influenzae HI1004 [Escherichia coli] gi|1786645|gb|AAC73544.1| periplasmic folding chaperone, has an inactive PPIase domain [Escherichia coli str. K-12 substr. MG1655] gi|73854493|gb|AAZ87200.1| putative protease maturation protein [Shigella sonnei Ss046] gi|76365131|gb|ABA42059.1| peptidyl-prolyl isomerase [Escherichia coli] gi|81244340|gb|ABB65048.1| putative protease maturation protein [Shigella boydii Sb227] gi|85674581|dbj|BAE76221.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12 substr. W3110] gi|91071089|gb|ABE05970.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89] gi|110342294|gb|ABG68531.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 536] gi|115511825|gb|ABI99899.1| peptidyl-prolyl isomerase [Escherichia coli APEC O1] gi|169756114|gb|ACA78813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli ATCC 8739] gi|169887862|gb|ACB01569.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli str. K-12 substr. DH10B] gi|188491547|gb|EDU66650.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638] gi|190906031|gb|EDV65646.1| peptidylprolyl isomerase [Escherichia coli F11] gi|192958940|gb|EDV89376.1| peptidylprolyl isomerase [Escherichia coli E110019] gi|218364120|emb|CAR01785.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli S88] gi|218425869|emb|CAR06675.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli ED1a] gi|218430822|emb|CAR11696.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli UMN026] gi|222032236|emb|CAP74975.1| Peptidyl-prolyl cis-trans isomerase D [Escherichia coli LF82] gi|226898774|gb|EEH85033.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA] gi|227838634|gb|EEJ49100.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 83972] gi|238861991|gb|ACR63989.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli BW2952] gi|260450372|gb|ACX40794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1] gi|291429415|gb|EFF02435.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412] gi|291471769|gb|EFF14252.1| conserved hypothetical protein [Escherichia coli B354] gi|294490510|gb|ADE89266.1| peptidylprolyl isomerase [Escherichia coli IHE3034] gi|298280287|gb|EFI21791.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302] gi|299880017|gb|EFI88228.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1] gi|300315276|gb|EFJ65060.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1] gi|300355993|gb|EFJ71863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1] gi|300407556|gb|EFJ91094.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1] gi|300414627|gb|EFJ97937.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1] gi|300452506|gb|EFK16126.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1] gi|300843353|gb|EFK71113.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1] gi|301074512|gb|EFK89318.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1] gi|305853854|gb|EFM54293.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli NC101] gi|306907683|gb|EFN38185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W] gi|307552348|gb|ADN45123.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ABU 83972] gi|307628089|gb|ADN72393.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli UM146] gi|308121479|gb|EFO58741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7] gi|309700702|emb|CBI99998.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ETEC H10407] gi|312290768|gb|EFR18645.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75] gi|312945019|gb|ADR25846.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O83:H1 str. NRG 857C] gi|315059721|gb|ADT74048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli W] gi|315135123|dbj|BAJ42282.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1] gi|315289841|gb|EFU49231.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3] gi|315294225|gb|EFU53576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1] gi|315299565|gb|EFU58813.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3] gi|315616618|gb|EFU97235.1| PPIC-type PPIASE domain protein [Escherichia coli 3431] gi|320186071|gb|EFW60816.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella flexneri CDC 796-83] gi|320197085|gb|EFW71704.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli WV_060327] gi|323164242|gb|EFZ50049.1| PPIC-type PPIASE domain protein [Shigella sonnei 53G] gi|323379714|gb|ADX51982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli KO11] gi|323938627|gb|EGB34876.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520] gi|323943248|gb|EGB39404.1| ppic-type ppiase domain-containing protein [Escherichia coli E482] gi|323952947|gb|EGB48815.1| ppic-type ppiase domain-containing protein [Escherichia coli H252] gi|323958634|gb|EGB54337.1| ppic-type ppiase domain-containing protein [Escherichia coli H263] gi|324010072|gb|EGB79291.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2] gi|324010655|gb|EGB79874.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1] gi|324116929|gb|EGC10842.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167] gi|331037759|gb|EGI09979.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H736] gi|331051120|gb|EGI23172.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M718] gi|331054746|gb|EGI26755.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA206] gi|331060244|gb|EGI32208.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA143] gi|331081038|gb|EGI52203.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H299] Length = 623 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|256020413|ref|ZP_05434278.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella sp. D9] gi|332281592|ref|ZP_08394005.1| conserved hypothetical protein [Shigella sp. D9] gi|320201685|gb|EFW76261.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli EC4100B] gi|332103944|gb|EGJ07290.1| conserved hypothetical protein [Shigella sp. D9] Length = 623 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|254994931|ref|ZP_05277121.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Mississippi] Length = 630 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 146/648 (22%), Positives = 282/648 (43%), Gaps = 61/648 (9%) Query: 12 WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG---- 65 +V + VL FV F+ +G + V VG + + +++ EL Sbjct: 7 FVGAVLAAVLCAFV-FVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIES 65 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 ++ QK+ SE G+ + L +V L++F +++ L + + I P+F Sbjct: 66 LVHQKL-----SEDDMRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMF 120 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----------RTDVVGMFVGGMRP 174 K K F LA G+ E YI L +V + G Sbjct: 121 QDKSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQ 180 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRI 232 L R ++R+VD + ++ V + P+++ L + + N PEY+ Sbjct: 181 DVL------RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSA 234 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y++ + ++ SNDE+++E KN E + + R V LVFP++ EA A++++K+ Sbjct: 235 EYMIVSEDDALDEVTASNDEVESEI-KNSELH---DQRDVLNLVFPSESEASAAYKAIKE 290 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 GK F + ++ G ++ +++L + +KE +P + + +++F L +G+ + V G+ + Sbjct: 291 GKAFEAVVKDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMK 348 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIV 411 + + P +++K+ +A ++ KA E ++ E ++ G TS E++ K Sbjct: 349 ILSKHPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKP 408 Query: 412 SID-LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPD------GSY 463 +I L D G+D GK + Y E+ F + G PL+ V P +Y Sbjct: 409 AIGALKDFDSNGQDSTGK---SHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAY 465 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 V + P+R R +E + + WK E+ A+ L + K G+N G Sbjct: 466 FSVIVTGVTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGEN---PGSA 521 Query: 524 LGASLLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 +G + I+R++ + Y D + QVF + V I+ G + +F T + Sbjct: 522 VGIATKKNENISRVNRKKGGSNYPEDLVDQVFEMRIGDVGEGVIDQGTNK-IFIATLKDI 580 Query: 582 ---GPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 G V EK+ +F ++ T + ++++L ++Y V ++ L++ Sbjct: 581 KTPGQVNEKELKEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 628 >gi|311280662|ref|YP_003942893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae SCF1] gi|308749857|gb|ADO49609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae SCF1] Length = 624 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 125/529 (23%), Positives = 243/529 (45%), Gaps = 40/529 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI ++ V F++ G+S L + G++T + V Q++ S F N+ Sbjct: 1 MMDSLRTAANSVVLKIIFGIIIVSFILTGVSSYL--IGGNNTYAAKVNSQEIGRSQFENA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 E + Q++G N ++ L +++L+ L+ A LDQ+ + +GL + Sbjct: 59 VASERNRMQQQLGDRFSELAANENYMKT--LRQQVLNRLIDEALLDQYAKHLGLAISDQQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172 V I ++ F + KF +D F +++ G+ +Y L ++ VG M Sbjct: 117 VKQAIFQTQAFQ-SNGKFDNDRFNGIVSQMGMTADQYAQALRNQLETQQLINAIVGTDFM 175 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 P +Q + R V +N + A S+ ++ ++E++K+ + +PE R+ Sbjct: 176 LPGET--EQLATLVSQQRIVREATINVDALAAKQQVSDQEISSYYEQHKNEFVSPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--AFQSL 290 SYI D ++ S+ ++Q+ Y++++E++ PE V V + EAD +L Sbjct: 234 SYIKLDAAAMQETA--SDSDIQSYYDQHQEQFTQPE--RVRYSVIQTKTEADAKAVLDAL 289 Query: 291 KKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 KG F LA+E KS IS +G PD L ++ L +KG + VI Sbjct: 290 SKGADFAALAKE--KSADIISAKNGGDMGWLEASTTPD-ELKNA--GLKEKGQLSGVITS 344 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-- 402 S G+++A + +++P+ EV+ DIA +++ EK + Y L++ ++ S D Sbjct: 345 SVGFLVARLDDVQPAKEKPLAEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNE 400 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDG 461 ++ E++ + + G+D E+ P + + + G++ + + DG Sbjct: 401 SLAGAEQVAGMKAVETGWFGRDSLPSELNFKPVADAIFNGGLVGENGAPGSNSDIITVDG 460 Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 +V +I E + L +V V K K ++ A++L+ E Sbjct: 461 DRAFVLRISEHKAEAVKPLADVKAQVTDIVKHTKAEQQAKLDADKLLAE 509 >gi|331645617|ref|ZP_08346721.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M605] gi|331045779|gb|EGI17905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M605] Length = 623 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 141/651 (21%), Positives = 284/651 (43%), Gaps = 54/651 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY----------VVFKV 576 ++R G D ISQ V P ++ SY V+ + Sbjct: 525 KFGEPKTLSRS-------GRDPISQ-----AAFVLPLPAKDKPSYGMATDMQGNVVLLAL 572 Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 573 DEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|261253455|ref|ZP_05946028.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP 102891] gi|260936846|gb|EEX92835.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP 102891] Length = 619 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 125/532 (23%), Positives = 240/532 (45%), Gaps = 31/532 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + V GS+ T VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNTAAKVGNVEIGRGEFEQA 58 Query: 60 WKQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + N ++ + K +LD +V+ L+Q E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDVLLEQHAESLGLRVSDTQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRP 174 I P F D KF +++ + L R G N + + ++ + L R ++ G P Sbjct: 119 TLILEMPQFQ-IDGKFDQEIYQTALRRAGFNAESFAEYLRRDLVRNQLLTAIQGSDFTLP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 S + + + + R V + L+ A A S + ++++ + Y PE +++Y Sbjct: 178 SEV--EAQSKLLTQTREVKKVTLSLEDFAAKAQLSEDEINDYYKQNPERYTRPEQVKVAY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 I + + I++S ++ + Y+++ +KY S E R V ++ +Q +A L Sbjct: 236 IELSAQQLKDDIQVSEEQAKQYYQEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F LAEE+ G + SLG ++ + D + D+ F+L K GD T ++ FGY Sbjct: 296 GADFATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEDAAFALTKVGDTTGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407 I + +K S + EV +I +++ +A ++ E LE+ S+D+ + Sbjct: 355 HIIKLDELKDSVAKPYAEVAAEIKQELKDQQAVDQYYELQSELEKVAFEYPDSLDDAA-- 412 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + ++ + DF + V E+ P Q + K+D L+ + P+ + V+ Sbjct: 413 -QAINAKIHTTDFISQ-VDAPELLKTPAVLQAIVSPEVKEDGLNSEVIEVAPE-HVIVVR 469 Query: 468 IKESIPARDR---KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 +++ ARD L +V V VK + A++LV E KEGK Sbjct: 470 VED---ARDEMVLPLADVREQVTTTLAKVKGEQSAIELADKLVAEL-KEGKQ 517 >gi|254476823|ref|ZP_05090209.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11] gi|214031066|gb|EEB71901.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11] Length = 613 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 116/505 (22%), Positives = 223/505 (44%), Gaps = 18/505 (3%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 ++K S+T+V I + +L V +G + SV +V VG Q+V + ++E Sbjct: 5 MKKLSKTFV-WILMGMLIVGLAGFGAVNFTGSVG---SVAVVGEQEVSVDDYARELQREQ 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + + G + + ++GLD+ +L L++ A LDQ D+GL ++ EI+R Sbjct: 61 RALEAQTGQRMPIAQLTTLGLDRVVLGRLIAIAALDQESSDLGLSIGDENLFEEISRIEA 120 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F FS + + L G+NE+ + + +RT V G + G + L D Sbjct: 121 FQDPAGNFSRENYQFALENIGLNERAFEADLRRESARTLVQGAVMVGTEMPDTLRDTLTN 180 Query: 185 FYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + RS D++V++ + A +P+ L +++ D + P K I+Y Sbjct: 181 YIGARRSFDWLVIDPASIALTAVEPTEEELRAFYDANIDQFTLPRTKVITYAALRPDALV 240 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302 +IE+ LQ + ++Y PE R VE+LVF +Q A A L G F L E Sbjct: 241 DEIEVDEAALQQLFNDRSDEYQVPERRLVERLVFADQDAAASAKAQLDINGTTFEALVEN 300 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +G +L DI +G + + + A +FS A+ G + G + V+ + Sbjct: 301 RGLTLQDIDMGDVTMGDLG--TAAQDVFS-AEVGTVVGPLDSDLGPALYRVNGRLEARVT 357 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 +V+ ++ ++ +A ++ + + + LA G +++E+ E+ ++L +D+ Sbjct: 358 QLDDVRDELRAELATDRARRLIETRAEDINDMLAGGATLEEL---EQEPGMELGQIDWHT 414 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 G +AA + V +D P L DGS +++ E + R E+ Sbjct: 415 GSSDG--IAAYDGFRSVASAVTIEDFP----EVEFLEDGSLFALRLDEELEPRPEPFEDA 468 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLV 507 ++ W+ + E + ++A+++ Sbjct: 469 QDKLRAAWQDNRLQEAMKAEADRVA 493 >gi|291281348|ref|YP_003498166.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615] gi|209743820|gb|ACI70217.1| putative protease maturation protein [Escherichia coli] gi|290761221|gb|ADD55182.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615] gi|320661211|gb|EFX28642.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. USDA 5905] Length = 623 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ +LQ+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ D+A +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVKHEKA 380 >gi|260853664|ref|YP_003227555.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str. 11368] gi|257752313|dbj|BAI23815.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str. 11368] gi|323153478|gb|EFZ39732.1| PPIC-type PPIASE domain protein [Escherichia coli EPECa14] Length = 623 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 141/654 (21%), Positives = 284/654 (43%), Gaps = 60/654 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524 +I E P + L +V VK + K ++ A +L+ L+ K + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573 G + + G D ISQ F+ P P ++ SY V+ Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569 Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|15800171|ref|NP_286183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O157:H7 EDL933] gi|15829749|ref|NP_308522.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O157:H7 str. Sakai] gi|168747883|ref|ZP_02772905.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113] gi|168754546|ref|ZP_02779553.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401] gi|168760404|ref|ZP_02785411.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501] gi|168768396|ref|ZP_02793403.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486] gi|168777137|ref|ZP_02802144.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196] gi|168778934|ref|ZP_02803941.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076] gi|168786292|ref|ZP_02811299.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869] gi|168798005|ref|ZP_02823012.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508] gi|208809217|ref|ZP_03251554.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206] gi|208815330|ref|ZP_03256509.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045] gi|208823220|ref|ZP_03263538.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042] gi|209395856|ref|YP_002269088.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115] gi|217325591|ref|ZP_03441675.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588] gi|254791625|ref|YP_003076462.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. TW14359] gi|261223924|ref|ZP_05938205.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. FRIK2000] gi|261256362|ref|ZP_05948895.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. FRIK966] gi|12513303|gb|AAG54791.1|AE005223_6 putative protease maturation protein [Escherichia coli O157:H7 str. EDL933] gi|13359952|dbj|BAB33918.1| putative protease maturation protein [Escherichia coli O157:H7 str. Sakai] gi|187767557|gb|EDU31401.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196] gi|188017729|gb|EDU55851.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113] gi|189002976|gb|EDU71962.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076] gi|189357979|gb|EDU76398.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401] gi|189362425|gb|EDU80844.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486] gi|189369155|gb|EDU87571.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501] gi|189373538|gb|EDU91954.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869] gi|189379237|gb|EDU97653.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508] gi|208729018|gb|EDZ78619.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206] gi|208731978|gb|EDZ80666.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045] gi|208737413|gb|EDZ85097.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042] gi|209157256|gb|ACI34689.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115] gi|209743814|gb|ACI70214.1| putative protease maturation protein [Escherichia coli] gi|209743816|gb|ACI70215.1| putative protease maturation protein [Escherichia coli] gi|209743818|gb|ACI70216.1| putative protease maturation protein [Escherichia coli] gi|209743822|gb|ACI70218.1| putative protease maturation protein [Escherichia coli] gi|217321812|gb|EEC30236.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588] gi|254591025|gb|ACT70386.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. TW14359] gi|320192857|gb|EFW67497.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7 str. EC1212] gi|320638436|gb|EFX08150.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. G5101] gi|320643817|gb|EFX12940.1| periplasmic folding chaperone [Escherichia coli O157:H- str. 493-89] gi|320649168|gb|EFX17746.1| periplasmic folding chaperone [Escherichia coli O157:H- str. H 2687] gi|320656061|gb|EFX23977.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665187|gb|EFX32280.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. LSU-61] gi|326341205|gb|EGD64997.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7 str. 1044] gi|326346020|gb|EGD69759.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7 str. 1125] Length = 623 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ +LQ+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ D+A +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVKHEKA 380 >gi|27363507|ref|NP_759035.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6] gi|27359623|gb|AAO08562.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6] Length = 619 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/406 (24%), Positives = 187/406 (46%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ L VSGSS + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYL--VSGSSNSAAKVGNVEIGRGEFEMA 58 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 59 YQNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F +D KF+ DV+ + L R G + + ++ + L R+ + ++ S Sbjct: 119 SMILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRS----QLLDALQTSE 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D + + + R V + LN R + + +++++ K + PE ++ Sbjct: 174 FTLPGEVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290 SYI +++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L Sbjct: 234 SYIELAADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+E+ G + + LG ++ + D + ++ F+L GD T ++ F Sbjct: 294 NAGADFATLAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I + +K F +V I +M KA ++ E LE Sbjct: 353 GYHIIKLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELE 398 >gi|227113469|ref|ZP_03827125.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 626 Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 141/645 (21%), Positives = 283/645 (43%), Gaps = 58/645 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ S L ++ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN+F ++ ++ ++ R G+ D Y +ML + + G + Sbjct: 120 AIFDVPAFQ-TDNRFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNTAF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 LL D + ++R V ++ ++ + ++++ K N+ APE ++S Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEIQSYYDQNKGNFIAPEEFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D +++ + + YE+NK Y PE + + N+ +A +LK+G Sbjct: 235 YITLDAASIMDGVKVDDAAINDFYEQNKSGYSQPERKKFSVIQVKNEADAASVLDALKQG 294 Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ +S + G ++ + S+ D + L +KG + I S GY+I Sbjct: 295 GDFATLAKEKSTDVISRRNGGDLG--WMDENSMIDELKQAKLTEKGQVSEAIKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 + +++P EV+ +IA +++ EK ++ Y L++ ++ S D ++ E Sbjct: 353 VRLDDVQPQQVKPLSEVRAEIAEKVK----HEKAQDGYYALQQKVSEAASNDNESLASAE 408 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464 + + D+ ++ K AA+ ++ Q +F + G++ + V DG Sbjct: 409 EAAGVKATQTDWFTRE---KVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRA 465 Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 +V +I E P R L++V T++ + K K ++ A +++ E K+GK+ + Sbjct: 466 FVLRITEHKPESTRPLDQVRTEIVETLKRQKAEQQTRVDAEKILAEL-KQGKD-----EA 519 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-------- 575 L A+ L+ + M + ++ G +F+ P P ++ SY + + Sbjct: 520 LKAAGLSFGEAKTMSSISQ--GDATAEAIFAMP------HPEKDKPSYAITQDQAGNVVL 571 Query: 576 VTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 V V P Q +K +F S + Q L DS+++ L+S+ + Sbjct: 572 VALDSVTPHQLNDEQKTQFASQVQQGSLGALFDSLLSSLRSEAKI 616 >gi|320156965|ref|YP_004189344.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus MO6-24/O] gi|319932277|gb|ADV87141.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio vulnificus MO6-24/O] Length = 619 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/406 (24%), Positives = 187/406 (46%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ L VSGSS + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYL--VSGSSNSAAKVGNVEIGRGEFEMA 58 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 59 YQNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F +D KF+ DV+ + L R G + + ++ + L R+ + ++ S Sbjct: 119 SMILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRS----QLLDALQTSE 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D + + + R V + LN R + + +++++ K + PE ++ Sbjct: 174 FTLPGEVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290 SYI +++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L Sbjct: 234 SYIELAADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+E+ G + + LG ++ + D + ++ F+L GD T ++ F Sbjct: 294 NAGADFAALAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I + +K F +V I +M KA ++ E LE Sbjct: 353 GYHIIKLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELE 398 >gi|170681699|ref|YP_001742585.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli SMS-3-5] gi|218698647|ref|YP_002406276.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli IAI39] gi|300937058|ref|ZP_07151924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1] gi|301022565|ref|ZP_07186437.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|170519417|gb|ACB17595.1| peptidylprolyl isomerase [Escherichia coli SMS-3-5] gi|218368633|emb|CAR16372.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli IAI39] gi|284920251|emb|CBG33310.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 042] gi|300397446|gb|EFJ80984.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|300457889|gb|EFK21382.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1] gi|323170528|gb|EFZ56178.1| PPIC-type PPIASE domain protein [Escherichia coli LT-68] gi|323965128|gb|EGB60587.1| ppic-type ppiase domain-containing protein [Escherichia coli M863] gi|327254769|gb|EGE66385.1| PPIC-type PPIASE domain protein [Escherichia coli STEC_7v] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 141/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ D+A +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|253687447|ref|YP_003016637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754025|gb|ACT12101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 626 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 141/645 (21%), Positives = 280/645 (43%), Gaps = 58/645 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ S L ++ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQEALGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ ++ ++ R G+ D Y +ML + + G S+ Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNSSF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 LL D + ++R V ++ ++ + ++++ K N+ APE ++S Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D +++ + + YE+NK Y PE + + N+ +A +LK+G Sbjct: 235 YITLDAASIMDGVKVDDAAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQG 294 Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ +S + G ++ + S+ D + L +KG + I S GY+I Sbjct: 295 GDFATLAKEKSTDIISRRNGGDLG--WMDENSMIDELKQAKLTEKGQISAAIKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 + +++P EV+ +IA +++ EK ++ Y L++ ++ S D ++ E Sbjct: 353 VRLDDVQPQQIKPLSEVRAEIAEKVK----HEKAQDGYYALQQKVSEAASNDNESLASAE 408 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464 + + D+ ++ K AA+ ++ Q +F + G++ + V DG Sbjct: 409 EAAGVKATQTDWFTRE---KVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRA 465 Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 +V +I E P R L++V T++ + K K ++ A +++ E K+GK+ D K Sbjct: 466 FVLRITEHKPESTRPLDQVRTEIVETLKRQKAEQQARLDAEKILAEL-KQGKD--DALKA 522 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-------- 575 G S ++ + G +F+ P P ++ SY + + Sbjct: 523 AGLSFGEAKTMSSISQ-----GDATAEAIFAMP------HPEKDKSSYAIAQDQAGNVVL 571 Query: 576 VTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 V V P Q +K +F S + Q L DS+++ L+S+ + Sbjct: 572 VALDSVTPHQLNDEQKTQFASQVQQGSLGALFDSLLSSLRSEAKI 616 >gi|320178277|gb|EFW53251.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella boydii ATCC 9905] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|331671987|ref|ZP_08372783.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA280] gi|320173739|gb|EFW48922.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella dysenteriae CDC 74-1112] gi|331070976|gb|EGI42335.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA280] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDLISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|187732708|ref|YP_001879152.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii CDC 3083-94] gi|187429700|gb|ACD08974.1| peptidylprolyl isomerase [Shigella boydii CDC 3083-94] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 142/652 (21%), Positives = 285/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIHPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|330910235|gb|EGH38745.1| peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli AA86] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 141/651 (21%), Positives = 283/651 (43%), Gaps = 54/651 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLAGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLAGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY----------VVFKV 576 ++R G D ISQ V P ++ SY V+ + Sbjct: 525 KFGEPKTLSRS-------GRDPISQ-----AAFVLPLPAKDKPSYGMATDMQGNVVLLAL 572 Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 573 DEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300820313|ref|ZP_07100465.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7] gi|331666797|ref|ZP_08367671.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA271] gi|331676113|ref|ZP_08376825.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H591] gi|300527098|gb|EFK48167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7] gi|331066021|gb|EGI37905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA271] gi|331076171|gb|EGI47453.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H591] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 141/652 (21%), Positives = 286/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ D+A +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDVAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RISEHKPEVVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300930256|ref|ZP_07145669.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1] gi|300461828|gb|EFK25321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|194437396|ref|ZP_03069493.1| peptidylprolyl isomerase [Escherichia coli 101-1] gi|253774568|ref|YP_003037399.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160511|ref|YP_003043619.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli B str. REL606] gi|194423565|gb|EDX39555.1| peptidylprolyl isomerase [Escherichia coli 101-1] gi|242376223|emb|CAQ30914.1| periplasmic folding helper protein [Escherichia coli BL21(DE3)] gi|253325612|gb|ACT30214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972412|gb|ACT38083.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli B str. REL606] gi|253976622|gb|ACT42292.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli BL21(DE3)] gi|323972295|gb|EGB67505.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|157156448|ref|YP_001461628.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli E24377A] gi|157078478|gb|ABV18186.1| peptidylprolyl isomerase [Escherichia coli E24377A] Length = 623 Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|283834240|ref|ZP_06353981.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC 29220] gi|291069758|gb|EFE07867.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC 29220] Length = 624 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 145/651 (22%), Positives = 288/651 (44%), Gaps = 54/651 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF ++ + + + + G+ +Y L+ ++ G ++ Sbjct: 119 QAIFTTPSFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAG----TD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A ++ +T ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAAAMQETA--SDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+E KS IS +G + PD L ++ L +KG + VI S Sbjct: 292 GGDFAALAKE--KSADIISARKGGDMGWLEESTTPD-ELKNA--GLKEKGQLSGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +++P+ E + DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDVQPAQVKPLSEARDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGS 462 + E+ + + +D KE+ P + ++F + G++ + + DG Sbjct: 403 AGAEQAAGMKAVETGWFSRDSLPKELNFKPVAD-IIFNGGLVGENGTPGSNSDIITVDGD 461 Query: 463 YMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 +V +I E + L EV V K K ++ A++L+ + K GK D Sbjct: 462 RAFVLRIAEHKAEAVKPLAEVKEQVTALVKHNKAVQQAKLDADKLLADL-KAGKG-DDAM 519 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKV 576 K G S ++R G D +SQ G P + + + N + + V+ + Sbjct: 520 KAAGLSFGEAKTLSRT-------GQDPLSQAAFGLSLPAQDKPSYGVANDMQGNVVLLAL 572 Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + +++++ L+ + V D L Q+ Sbjct: 573 EEVKAGSMPEAQKKAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623 >gi|323963431|gb|EGB58993.1| ppic-type ppiase domain-containing protein [Escherichia coli H489] Length = 623 Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 183/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|260773190|ref|ZP_05882106.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP 69.14] gi|260612329|gb|EEX37532.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP 69.14] Length = 619 Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 123/560 (21%), Positives = 241/560 (43%), Gaps = 48/560 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + KI L ++ + F+ G+ + + G++ VG+ ++ F ++ Sbjct: 1 MMERLREGVNSIAVKIILGLIILSFIFAGVGNYIVG-GGNNAAAKVGKTEISRGEFEQAY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ L + +LD++++ ++Q + +GL +V Sbjct: 60 QNERNRMQSQLGDYFSTLLADPTYVASLRRSVLDSMINDILIEQHAQSLGLRVSDNQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +++ S L R G D + + + R+ V V ++ S Sbjct: 120 AIIAMPEFQSA-GQFDQNIYQSALRRAGFTP----DAFAEYMRRSLVRDQLVAALQTSEF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + + R V I L ++ + Q++++ D Y PE RIS Sbjct: 175 TLPGEVEGLSALVAQARDVRTITLPTTDFAKDVQLTDQEIEQYYQQNDDRYTRPEQMRIS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLK 291 YI + ++ I I++++ +A Y+ +++KY S E R V ++ +++ A L Sbjct: 235 YIELAAQQLKEAITITDEQTKAFYDAHQDKYASKEQRKVSHIMIQGDDEQAAQAILDQLH 294 Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F QLA+E+ G S LG + + D + + F+L + G+ + ++ FG Sbjct: 295 NGADFAQLAKEKSQDIGSSQEGGELGWIEPDTM-DAAFESAAFALQQVGEISGLVKSDFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y + + +K +++V +I +++ +A ++ + LE S D + Sbjct: 354 YHVIKLDELKAPVIKPYEQVAVEIKAELQDQQAVDRFYQLQTELERIAF--ESPDSLDEA 411 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAI---PYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 K + D+ DF + E+ AI P Q L + K+D L+ D P+ + Sbjct: 412 AKAIGADIQHTDF----ISVAELPAILSAPAVIQALRQPEVKEDQLNSDAIEIAPE-HVV 466 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V+++++ P L EV + +K ++ AN LV G N Sbjct: 467 VVRVEQTRPEIILPLAEVREQIVATLSRLKAEQQALQLANDLV------------TGLNA 514 Query: 525 G-ASLLTTNQ-----INRMD 538 G SLL T+Q I RMD Sbjct: 515 GDNSLLDTHQLAFSEIQRMD 534 >gi|193064188|ref|ZP_03045272.1| peptidylprolyl isomerase [Escherichia coli E22] gi|194428997|ref|ZP_03061529.1| peptidylprolyl isomerase [Escherichia coli B171] gi|260842642|ref|YP_003220420.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str. 12009] gi|192929217|gb|EDV82827.1| peptidylprolyl isomerase [Escherichia coli E22] gi|194412934|gb|EDX29224.1| peptidylprolyl isomerase [Escherichia coli B171] gi|257757789|dbj|BAI29286.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str. 12009] gi|323160448|gb|EFZ46396.1| PPIC-type PPIASE domain protein [Escherichia coli E128010] Length = 623 Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 140/654 (21%), Positives = 284/654 (43%), Gaps = 60/654 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L + Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNE 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524 +I E P + L +V VK + K ++ A +L+ L+ K + + G Sbjct: 467 RISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573 G + + G D ISQ F+ P P ++ SY V+ Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569 Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|85712920|ref|ZP_01043960.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] gi|85693226|gb|EAQ31184.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] Length = 624 Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 94/416 (22%), Positives = 197/416 (47%), Gaps = 35/416 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+++ AK LV++ + F + G+ + + ++TV V ++ + ++ Sbjct: 1 MLERIREGSQSFTAKAVLVLIILTFALAGVG-SYVTGGATTTVAEVNDAEISQQALERAY 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++ G + V+S+ + +L+ L+ L Q+ D G+ RV Sbjct: 60 ENERNRLQEQFGDMFEAVSSQPGYMQSVRANVLEQLIQQELLVQYARDHGMRVSAARVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR---P 174 EI P F +F +D+++ L G +++ L R+ + +G P Sbjct: 120 EIRDIPAFRSA-GQFDNDIYLMALRNAGYTPEQFATVLRDDLIRSQI-AQAIGATEFALP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L Q R + RS YI+ N + + S++ + ++ + + ++ PE ++++ Sbjct: 178 AEALALQ--RLQKQTRSGAYIIAENANFVDQVELSDSDIENYYNENQQQFQTPEQLKVAF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQS 289 + E +++S+DE++A Y+ + ++Y + E R V ++ + Q++A EA Sbjct: 236 VQLSKAELYNDVKVSDDEVKAYYQGSIDQYRTDEERRVAHILIESDSDNAQEKAQEALAQ 295 Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 L G F +A+ EQG L I+ GS +++ ++ F+L GD + Sbjct: 296 LNDGADFAAIAKEYSDDTFSAEQGGDLDWITKGSMDEDF------DNAAFALENVGDVSD 349 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 ++ SFGY I + +++P F+ D+A ++R +++V + Y L++ LA Sbjct: 350 IVETSFGYHIIKLLDVRPGEVTPFE----DVAGEIRQKLKAQQVDDKYFELQQKLA 401 >gi|83858361|ref|ZP_00951883.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853184|gb|EAP91036.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633] Length = 635 Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 133/638 (20%), Positives = 262/638 (41%), Gaps = 20/638 (3%) Query: 1 MLEIIRKASRT-WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML +IR +R+ + + + +L F +WG+SD +FS G+S +V VG Q V S + Sbjct: 1 MLSLIRSLARSPIIGGMIIALLIAAFALWGVSD-IFSGGGTSALV-VGPQTVSASEVQRN 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++++L I Q+ + E+A +GL ++ L++ +D + +GL ++ + Sbjct: 59 YERQLFQI-QRDNPQITREQADQMGLGDSVVRRLIAETAVDAKADQMGLTISDDTLFETL 117 Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREG----INEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 P F N+F + S L G + E+++ T L R V +GG+R Sbjct: 118 RSIPAFQNPFTNQFDPGTYASILRENGYRGSMAERQFESDITSELRRAQFVAAALGGVRA 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ + + E RS+ + L V P + LT + + + E +R++ Sbjct: 178 PDIYAEIRAAYENERRSLRALFLRPVLVETPEAPDDETLTAFIGENARIFERAEQRRLTL 237 Query: 235 ILFDVHEKEKKIEISNDELQA--EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + + + +E+S ++LQA +Y + P R++ Q P+Q+ A+ A L Sbjct: 238 VRITPTDLLRDVEVSEEDLQALYDYRLQNGELADPATRSLTQWPAPDQQTAETAAARLGA 297 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G+ + E G +++L +PD +A+ F + + G+ V G+ + Sbjct: 298 GESVASVVAELGLG-DEVALADVEAYQVPDAQIAERAFQM-QAGELAAV-ESQLGWRVLR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + T F V+ ++ ++ A + + EE G +++E +R + + Sbjct: 355 IDAANDPDTPDFAAVESELRTELARDTAEGMMLDALGVFEEARGNGATLEEAAREAGLFA 414 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + V G + + +L F + D DG Y V++ E Sbjct: 415 ERIDFVGANGYSPDREPALTLLQNPDILSAAFAAQQGFATDLEGYGEDGGYFVVRVDEIE 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 PAR +L+EV D + W +T + + + G+ I +LGA + Sbjct: 475 PARLYELDEVREDASRFWVMRETDNRLQEVVDDVQARLDA-GETLDAIAASLGAGARVES 533 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS---YVVFKVTNSKVGPVQEKDK 589 + + F ++Q F P +N + +V +V ++ G V + + Sbjct: 534 AVLGREETAGPFNAQLVAQAFRQPEGGRFVSRADNQTTRALVLVDEVIAAEGGAVTQAQR 593 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + +T + D V L + Y V + +LI + L Sbjct: 594 --NEMTGELRDDATQIVTNALINAYDVRQNQDLIDQAL 629 >gi|50120091|ref|YP_049258.1| peptidyl-prolyl cis-trans isomerase [Pectobacterium atrosepticum SCRI1043] gi|49610617|emb|CAG74062.1| peptidyl-prolyl cis-trans isomerase D [Pectobacterium atrosepticum SCRI1043] Length = 626 Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 118/533 (22%), Positives = 238/533 (44%), Gaps = 33/533 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ S L ++ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDAQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ ++ ++ R G+ D Y +ML + + G + Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNTAF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 LL D + ++R V ++ ++ + ++++ K N+ APE ++S Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D +++ + + YE+NK Y PE + + N+ EA SLK+G Sbjct: 235 YITLDAASIMDSVKVDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEAEAASVLDSLKQG 294 Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ +S + G ++ + S+ D + L +KG + I S GY+I Sbjct: 295 GDFAALAKEKSTDIISRRNGGDLG--WMDENSMIDELKQAKLTEKGQVSAAIKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 + +++P EV+ +IA +++ EK ++ Y L++ ++ S D ++ E Sbjct: 353 VRLDDVQPQQVKPLSEVRAEIAEKVK----HEKAQDGYYALQQKISEAASNDNESLASAE 408 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464 + S+ ++ ++ K A + ++ Q +F + G++ + V DG Sbjct: 409 EAASVKAAQTEWFTRE---KVPAVLNFQPVTQAIFSGALLGENGAAGNNSDVINVDGDRA 465 Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 +V +I E P R L++V T++ + K K ++ A +++ E K+GK+ Sbjct: 466 FVLRITEHKPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD 517 >gi|255004191|ref|ZP_05278992.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Virginia] Length = 630 Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 145/648 (22%), Positives = 281/648 (43%), Gaps = 61/648 (9%) Query: 12 WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG---- 65 +V + VL FV F+ +G + V VG + + +++ EL Sbjct: 7 FVGAVLAAVLCAFV-FVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIES 65 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 ++ QK+ SE G+ + L +V L++F +++ L + + I P+F Sbjct: 66 LVHQKL-----SEDDMRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMF 120 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----------RTDVVGMFVGGMRP 174 K K F LA G+ E YI L +V + G Sbjct: 121 QDKSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQ 180 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRI 232 L R ++R+VD + ++ V + P+++ L + + N PEY+ Sbjct: 181 DVL------RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSA 234 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y++ + ++ SNDE+++E KN E + + R V LVFP++ EA A++++K+ Sbjct: 235 EYMIVSEDDALDEVTASNDEVESEI-KNSELH---DQRDVLNLVFPSESEASAAYKAIKE 290 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 GK F + ++ G ++ +++L + +KE +P + + +++F L +G+ + V G+ + Sbjct: 291 GKAFEAVVKDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMK 348 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIV 411 + + P +++K+ +A ++ KA E ++ E ++ G TS E++ K Sbjct: 349 ILSKHPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKP 408 Query: 412 SID-LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPD------GSY 463 +I L D G+D GK + Y E+ F + G PL+ V P +Y Sbjct: 409 AIGALKDFDSNGQDSTGK---SHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAY 465 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 V + P+R R +E + + WK E+ A+ L + K G+N G Sbjct: 466 FSVIVTGVTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGEN---PGSA 521 Query: 524 LGASLLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 +G I+R++ + Y D + QVF + V I+ G + +F T + Sbjct: 522 VGIVTKKNENISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANK-IFIATLKDI 580 Query: 582 ---GPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 G V EK+ +F ++ T + ++++L ++Y + ++ L++ Sbjct: 581 KTPGQVNEKELKEFQAHFTSSAISSIRRQLLSHLTNKYGIKINKKLLE 628 >gi|88657679|ref|YP_507533.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas] gi|88599136|gb|ABD44605.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas] Length = 634 Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 139/653 (21%), Positives = 283/653 (43%), Gaps = 59/653 (9%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQ 62 I S+ + K L++L + + F S + + +G +K+ + +++ Sbjct: 3 IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 EL I + + E+ + L+ L+ L +F + + L+ + I Sbjct: 63 ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL----- 177 F ++ F F L+ G+ E+ YI+ K T ++ G + + Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182 Query: 178 LLDQAKRFYFENRSVDYI----VLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKR 231 L+ Q + + R++D I N+ VP I + L + +E+ + N PE + Sbjct: 183 LIKQILQNLHQARTIDVIEISPTTNDISVPNIDE-----LKKLYEEKRKSGNLTFPESRV 237 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y+ D + ++ +E+ + + ++ E R + LVF + EA+ A ++L Sbjct: 238 IEYVTIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALN 293 Query: 292 KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 +G F + + L +I+L + K +P+ + + +FSL K+G+ +P++H FG+ I Sbjct: 294 EGTDFDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHI 351 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + NI T E+ + IA ++ KA++ + + + + + + GTS+ EI+ + Sbjct: 352 IKIKNIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAESYNL 411 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 SI VD +GKD ++ + + ++ F L+K DG + V + Sbjct: 412 -SIKTANVDISGKDPSDNKIKMLETNYDAIVLAAFSAQ--LNKPSNFTDNDGYFFSVNVT 468 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + P+R++ +E + +W+ A+++S ++V++ K+ DI N+ LL Sbjct: 469 KIEPSREKTFDESKEQLVYEWQHDLKAQKLSKLTQEVVIKL----KSGIDIN-NIDGVLL 523 Query: 530 TTNQ------INRMDNENKFFGYDGISQVFS-GPVEMVKCF-----PIENGLSYVVFK-- 575 NQ + +DN + + D I+++F E+ K + E + + K Sbjct: 524 KPNQVVYRNSVAAVDNPGQNYPSDLINEIFHLKKGEISKNYQHDISSSEQKMLIAILKDI 583 Query: 576 -----VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 V+N +QEK + + L + +IA+L +YSV ++ NLI Sbjct: 584 KNADQVSNVDFKNIQEK------IANDNLESLKNQLIAHLIKKYSVKINQNLI 630 >gi|260768943|ref|ZP_05877877.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP 102972] gi|260616973|gb|EEX42158.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP 102972] Length = 619 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/432 (22%), Positives = 193/432 (44%), Gaps = 20/432 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + L +SGS+ + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL--ISGSNNAAAKVGGTEIGRGEFEQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++ E + ++G + + E S K +LD +++ LDQ + +GL + Sbjct: 59 YQNERNRMQSQLGDYFSNLLADPEYVAS--FRKSVLDRMINDLLLDQHAQALGLRVSDTQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F D KF +++ S L R G + + ++ + L R ++ G Sbjct: 117 IRQMILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFT 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ + R + I L+ + S+ + Q++++ + Y PE ++SY Sbjct: 176 LKGEVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 I + + I IS+++ + YE + +KY S E R V ++ ++K A L Sbjct: 236 IELSAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNA 295 Query: 293 GKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F LA+E+ + + SLG + + D + + F+L K GD + ++ FGY Sbjct: 296 GADFATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++K + EV DI ++++ +A +K E LE+ S D + Sbjct: 355 HIIKLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAF--ESPDSLDDAA 412 Query: 409 KIVSIDLPLVDF 420 K +S + DF Sbjct: 413 KAISAHIVSTDF 424 >gi|194435312|ref|ZP_03067524.1| peptidylprolyl isomerase [Shigella dysenteriae 1012] gi|194416444|gb|EDX32601.1| peptidylprolyl isomerase [Shigella dysenteriae 1012] gi|332085739|gb|EGI90903.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 155-74] Length = 623 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 182/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFAIPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDGLNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|324114668|gb|EGC08636.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii B253] Length = 622 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/393 (24%), Positives = 187/393 (47%), Gaps = 28/393 (7%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFN 59 Query: 62 QELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G SE A + G L +++L+ L+ A LDQ+ D+ L +V Sbjct: 60 SERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + + L + G++ D Y + L + G+ ++ Sbjct: 119 AIFATPAFQ-VDGKFDNSRYNAILNQMGMS----ADQYAQALRNQLTTQQLINGIAGTDF 173 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D+ + R V ++ S+A +T +++++K+N+ PE R+S Sbjct: 174 MLKGETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVS 233 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI+ D ++ +S+ ++QA Y+++++++ P+ + + EA +L G Sbjct: 234 YIMLDAANIQQP--VSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNG 291 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E KS IS LG P L D+ L KG + VI S G Sbjct: 292 GDFAELAKE--KSADIISARNGGDLGWLEDSTTPQ-ELKDA--GLKDKGQLSGVIKSSVG 346 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++ + +++P+ + EV+ DIA +++ KA Sbjct: 347 FLVVRLDDVQPAKVKTLAEVRDDIAAKVKHEKA 379 >gi|315180639|gb|ADT87553.1| peptidyl-prolyl cis-trans isomerase D [Vibrio furnissii NCTC 11218] Length = 619 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/432 (22%), Positives = 193/432 (44%), Gaps = 20/432 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + L +SGS+ + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL--ISGSNNAAAKVGGTEIGRGEFEQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++ E + ++G + + E S K +LD +++ LDQ + +GL + Sbjct: 59 YQNERNRMQSQLGDYFSNLLADPEYVAS--FRKSVLDRMINDLLLDQHAQALGLRVSDTQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F D KF +++ S L R G + + ++ + L R ++ G Sbjct: 117 IRQMILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFT 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ + R + I L+ + S+ + Q++++ + Y PE ++SY Sbjct: 176 LKGEVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 I + + I IS+++ + YE + +KY S E R V ++ ++K A L Sbjct: 236 IELSAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNA 295 Query: 293 GKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F LA+E+ + + SLG + + D + + F+L K GD + ++ FGY Sbjct: 296 GADFATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++K + EV DI ++++ +A +K E LE+ S D + Sbjct: 355 HIIKLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAF--ESPDSLDDAA 412 Query: 409 KIVSIDLPLVDF 420 K +S + DF Sbjct: 413 KAISAHIVSTDF 424 >gi|262276274|ref|ZP_06054083.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP 101886] gi|262220082|gb|EEY71398.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP 101886] Length = 630 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 177/401 (44%), Gaps = 26/401 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 M+E +R+ + KI L ++ F+ G+ L SGS +VG +++ + F + Sbjct: 1 MMERLREGVNSIAVKIILGLIIFSFVFAGVGGYL--ASGSVQPAATVGNEEISRNQFEQA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E ++ + G + + L + +L+ +V+ + LDQ +++GL ++ Sbjct: 59 YQNERALMQAQAGDFFSQLLSDPNYLAQFRFNVLERMVNQSLLDQEAQNLGLRVSDDQIK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G F +D++++ L R G+ ++ D+ + L R +V + Sbjct: 119 QTIREMPAFRGATGLFDNDLYLASLRRNGLTPDQFADYVRQDLVREQLVNALISSEFALK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+ + + R+V + L AD + T ++E+ + PE +I+Y+ Sbjct: 179 GELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTAYYEQNPAEFVRPEQFKIAYVE 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLK 291 ++ DE +A YE NK Y + E R V ++ +++A+ L Sbjct: 239 LSGEGIADVAGVTEDEAKAYYEANKASYGTAEQRKVSHIMIQGDDNAAKEKAEAVLSELN 298 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 G F +LA+ EQG L G + D + ++ F+L KGD T V+ Sbjct: 299 AGADFAELAKTRSDDTFSAEQGGQLDWFDKG------VMDPAFEEAAFALNNKGDITGVV 352 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 FG+ I + ++KPS F +V+ DI Q++ A EK Sbjct: 353 QSDFGFHIIKLDDVKPSDAKPFAQVRDDIMAQLKQQHAVEK 393 >gi|296101563|ref|YP_003611709.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056022|gb|ADF60760.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 623 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 143/650 (22%), Positives = 285/650 (43%), Gaps = 53/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L ++ L+ L+ A LDQ+ + +GL +V Sbjct: 60 AGERNRMQQQLGDQF-SELAANEGYMKTLRQQTLNRLIDEALLDQYAKKLGLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + F + KF + + S + + G+ +Y L+ ++ VG ++ Sbjct: 119 KAIFSTQAFQ-SNGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVG----TD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A S+A + W+E+ K+++ APE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVRQATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ ++ E+Q+ Y+++++++ P+ + + +A L K Sbjct: 234 SYIKLDAAALQETA--TDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +A + KS IS +G PD L ++ L KG + VI S Sbjct: 292 GADFATVA--KAKSTDIISAKNGGDMGWLEAATTPD-ELKNA--GLKDKGQLSGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+ + T EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIEAAKTKPLAEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E+ + + G+D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQAAGVKAVETGWFGRDNLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDR 462 Query: 464 MWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 +V ++ E P + L EV V K K ++ A +++ + K GK D K Sbjct: 463 AFVLRVSEHKPEAIKPLAEVKDQVVAQVKHSKAEQQAKLDAEKILADL-KAGK--EDALK 519 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKVT 577 G S ++R G D ISQ G P + F + + V+ + Sbjct: 520 AAGLSFGDAKTLSRT-------GQDPISQAVFGLSLPAKDKPSFGTTTDMQGNVVLLALD 572 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P ++ + +TQ + +++++ L+ + + + D + Q+ Sbjct: 573 EVKAGTMPEAQRKAMVQGITQNNAQIAFEAMMSNLRKEAKIKLGDAITQQ 622 >gi|37679292|ref|NP_933901.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016] gi|37198035|dbj|BAC93872.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016] Length = 625 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/405 (23%), Positives = 183/405 (45%), Gaps = 20/405 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ L VSGSS + VG ++ F + Sbjct: 7 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYL--VSGSSNSAAKVGNVEIGRGEFEMA 64 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 65 YQNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVR 124 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F +D KF+ DV+ + L R G + + ++ + L R+ + ++ S Sbjct: 125 SMILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRS----QLLDALQTSE 179 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D + + + R V + LN R + + +++++ K + PE ++ Sbjct: 180 FTLPGEVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKV 239 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290 SYI +++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L Sbjct: 240 SYIELAADSLKQQITISDDEVKQYYQEHLDKYSSEEKRRVAHILIEGDDQAKAQAILDEL 299 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F LA+++ G + + + D + ++ F+L GD T ++ FG Sbjct: 300 NAGADFAALAQDKSDDFGSADNGGELGWIERGVMDPAFEEAAFALKNVGDVTGLVKSDFG 359 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 Y I + +K F +V I +M KA ++ E LE Sbjct: 360 YHIIKLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELE 404 >gi|260776378|ref|ZP_05885273.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus ATCC BAA-450] gi|260607601|gb|EEX33866.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus ATCC BAA-450] Length = 619 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 144/636 (22%), Positives = 275/636 (43%), Gaps = 54/636 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + V GS+ + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNSAAKVGNVEIGRGEFEQA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G ++ A ++ K +LD +++ L+Q E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSTLLADPNYVESFRKSVLDRMINDLLLEQHAESLGLRVSDSQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D KF +++ + L R G + D + + L R V + ++ S+ Sbjct: 119 SMIVDMPQFQ-VDGKFDQEIYQASLRRAGFSP----DSFAEYLRRDLVRNQLLTAIQASD 173 Query: 177 LLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L+ + + R + + L+ + A+ S + ++ + + Y PE ++ Sbjct: 174 FSLEGEVEAQSKLLTQTREIKKVTLSLSDFASKAELSEQEINDYYTQNPERYTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290 +Y+ + + I++S+++ + Y+++ +KY S E R V ++ E A L Sbjct: 234 AYVELSAQQLKDAIDVSDEQAKQYYQEHLDKYSSEEQRRVSHILIEGDDEAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LAEE+ G + SLG ++ + D + ++ F+L K GD T ++ F Sbjct: 294 NAGADFATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKKAGDVTGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405 GY I + +K S ++EV +I +++ +A ++ E +LE S+D+ + Sbjct: 353 GYHIIKLDELKDSVAKPYEEVASEIKQELKDQQAIDQFYELQSQLETVAFEYPDSLDDAA 412 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + ++ DF + E+ P Q + K+D L+ + P+ + Sbjct: 413 ---DAIKAEIHTTDFISQ-ADAPELLKAPAVMQAILSPEVKEDGLNSEVIEVAPE-HVIV 467 Query: 466 VQIKESIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 V++++ ARD L+EV V VK + A+ LV E K K+ Sbjct: 468 VRVED---ARDETVLPLDEVREQVTTALAKVKGEQSAIKLADNLVAELKKGNKD------ 518 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVF------SGPVEMVKCFPIENGLSYVVFKV 576 L+T N + D+EN VF SG VE + NG VV ++ Sbjct: 519 -----LMTENGLAFSDSENIDRSSPLADVVFSMKKPSSGQVEFAQAKDF-NG-DIVVVEL 571 Query: 577 TNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 TN K Q ++ + LTQM + L +I L+ Sbjct: 572 TNVKSDVNAQYNEQIGTQLTQMNAQQDLSGLINILR 607 >gi|157146942|ref|YP_001454261.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Citrobacter koseri ATCC BAA-895] gi|157084147|gb|ABV13825.1| hypothetical protein CKO_02719 [Citrobacter koseri ATCC BAA-895] Length = 623 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 136/647 (21%), Positives = 289/647 (44%), Gaps = 46/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI ++ V F++ G+S L + GS+ + V Q++ S F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYL--IGGSNNYAAKVNDQEISRSQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYAHELKLSISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFSTAAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLIAGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V ++ + A ++ ++ ++E+ K+ + PE R Sbjct: 173 DFMLKGETDELAALVAQQRVVREATIDVNALAAKQQATDQEVSSYYEQNKNRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D ++ + ++ ++Q+ Y+++++++ P+ + + EA +L Sbjct: 233 VSYIKLDAAAMQETV--NDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEDEAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYV 349 KG F LA+E+ + G ++ D + D + L +KG + VI S G++ Sbjct: 291 KGGDFAALAKEKSADIISARNGG-DMGWLEDATTPDELKNAGLKEKGQLSGVIKSSVGFL 349 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRR 407 +A + +++P+ E + DIA +++ EK + Y L++ ++ S D ++ Sbjct: 350 VARLDDVQPAKVKPLSEARDDIAAKVK----QEKALDAYYALQQKVSDAASNDTESLAGA 405 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV 466 E+ + + D +E+ P + + + G++ + + DG +V Sbjct: 406 EQAAGVKAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGSNSDIITVDGDRAFV 465 Query: 467 -QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +I E P + L +V V K K ++ A++L++E K GK + K G Sbjct: 466 LRISEHKPEAVKPLADVKEQVAALVKHNKAEQQAKLDADKLLVEL-KAGKGAEAM-KAAG 523 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVTNSK 580 S ++R G D +SQ P + + + N + + V+ + + K Sbjct: 524 LSFGEAKTLSRT-------GQDPVSQAAFALGLPEKDKPSYGVANDMQGNVVLLALDDVK 576 Query: 581 VG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 G P ++K + +TQ + +++++ L+ + V D L Q+ Sbjct: 577 AGSMPEEQKKAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623 >gi|284006425|emb|CBA71661.1| peptidyl-prolyl cis-trans isomerase D [Arsenophonus nasoniae] Length = 623 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/392 (23%), Positives = 185/392 (47%), Gaps = 22/392 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ + F++ G+ L + GSS V V + + Sbjct: 1 MMDNLRTAANSLVLKIVFVIIILSFVLTGVGSYL--IGGSSNHVAKVNGTAISQVQLQQA 58 Query: 60 WKQELGMISQKIG----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++QE ++ +++G + +SE+ + L ++ L+ L+ L+Q+ +GL A +V Sbjct: 59 FQQEKQVLQERLGDQFAEIASSEQGMQM-LRRQALERLIGVTLLNQYSNQLGLTASDNQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 +I P+F D F + + + L++ +N + + L + M++ Sbjct: 118 KQDIYNMPIFQ-TDGHFDSEKYRTILSQHNVNADDLAQEIRQNLINRQLSKMYI----TD 172 Query: 176 NLLLDQAKRFY----FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +L + + Y + R V L+ + + ++ L ++ +++++ +PE + Sbjct: 173 EFVLPEEVKSYAQLLLQQREVKTATLSLANYQSKQTVTDKELQDYYNAHQNSFISPEQVQ 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + + + ++EL+ YE+N + P + + P +KEAD +SL Sbjct: 233 VSYIKLDAASQRENVAVKDEELKNYYEQNIANFTQPAQKHYSMIQLPTEKEADSVVKSLA 292 Query: 292 KGKKFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFS--LAKKGDFTPVIHGSFGY 348 G F QL AE+ S + G+ ++ S I + L KKG + VI + Y Sbjct: 293 GGADFKQLVAEKSTDKFSAANHGALG--WMEATSTPSEIIAANLTKKGQISAVIKSASNY 350 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +I + +IKP FQ VK +IAN ++ KA Sbjct: 351 IIFRLDDIKPEVVKPFQSVKTEIANTLKNEKA 382 >gi|58617080|ref|YP_196279.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Gardel] gi|58416692|emb|CAI27805.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Gardel] Length = 630 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 148/651 (22%), Positives = 288/651 (44%), Gaps = 59/651 (9%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 S+ + AK+ L+VL + + LFS S V +G++K+ F ++ EL Sbjct: 3 SKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELRY 62 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 I Q + + E+ + +L+ L+ L +F + L+ V I F Sbjct: 63 IQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYFQ 122 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQA 182 ++ F F + L+ G+ E+ YI + ++ GG P N L D Sbjct: 123 DENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGG--PQNNYLQYYPDLT 180 Query: 183 KRF---YFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRA--PEYKRISY 234 K+ ++R+VD I ++ P I D P+ L +E+ K N PE + I Y Sbjct: 181 KKILQNLHQSRTVDIIEIS----PVINDISIPNMEELKSLYEEKKKNNSLVFPESRDIEY 236 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + + K +S +E+ +E K + +I + LVF + +A+ A L GK Sbjct: 237 VTINYENFTTKATVSQEEIDSEI---KAEGLDDQIDIL-NLVFSAKSDAENALSELNNGK 292 Query: 295 KFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F + + S L I+L + +K +PD + + +FSL K+G+ +P++H FG+ I V Sbjct: 293 TFDSIVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKV 350 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++ QE+ K I+ ++ KA++ + + + + + + GTS+ EI++ + I Sbjct: 351 TSVHKISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNL-PI 409 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 D +G ++ GK+V+ + + G L++ + + V++ + Sbjct: 410 KTITTDISGYNLLGKKVSISEANSNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQ 468 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 AR++ +E ++ +W+ ++++ SK Q +L K G + + N+ LL NQ Sbjct: 469 AREKTFDESKQELVDEWQNNFKSKKL-SKLTQEILIKLKSGIDIQ----NIDGVLLKPNQ 523 Query: 534 ------INRMDNENKFFGYDGISQVFS-GPVEMVKCF-----PIENGLSYVVFK------ 575 + +DN + + + ++++F+ E+ K + P E + V K Sbjct: 524 VVYRNSVASIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPE 583 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 V+ + QEK L+ + L + +I YL ++YSV ++ LI+ Sbjct: 584 QVSTVDLKATQEK------LSNNNTESLKNQLITYLTNKYSVKINRKLIEN 628 >gi|332094597|gb|EGI99643.1| PPIC-type PPIASE domain protein [Shigella boydii 5216-82] Length = 623 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/390 (23%), Positives = 182/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L + + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETGELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|170727449|ref|YP_001761475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi ATCC 51908] gi|169812796|gb|ACA87380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi ATCC 51908] Length = 619 Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/397 (24%), Positives = 182/397 (45%), Gaps = 32/397 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ LDQ ++GL ++ Sbjct: 60 QSERARLEQQLGEMFEALAADDSYLASVKQSVLERLVAEKLLDQSATELGLRVSDEQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F D KF +D + + L + G + D ++R +V VG + PS Sbjct: 120 AIMTEPAFQ-TDGKFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPS 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 D + R + Y V++ A A S+ +++ + +PE + YI Sbjct: 179 EA--DYLAGIQGQTRDIRYHVIDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQ 288 + + + ++++E Q Y++NK++Y PE R ++ + +AD + Sbjct: 237 ELNAKDMANDVVVTDEEAQTYYDENKQQYLKPEKRLAAHILVNLGDDESAAKAKADAIYA 296 Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 L+ G++F +LA+ EQG L G E+ D +FSL+ G+++ Sbjct: 297 KLQAGEEFAELAKTESEDTFSGEQGGQLDWFEKGVMEPEF------DDVLFSLS-NGEYS 349 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 V+ SFGY I + +++P F++VK I Q++ Sbjct: 350 AVVKTSFGYHIIKLLDLQPGAEAPFEDVKAKILAQLK 386 >gi|238751010|ref|ZP_04612506.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380] gi|238710700|gb|EEQ02922.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380] Length = 628 Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 184/389 (47%), Gaps = 16/389 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ V KI L ++ + F++ G+ L + GS+ + V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYL--IGGSNDFAAKVNGQEISRAQLEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E + Q++G + + + +++L LV+ LDQ+ + +GL A +V Sbjct: 59 VQSERSRMQQQLGEQFSALAANEGYMQQMRQQVLGQLVNNMLLDQYAKKLGLTASDAQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP 174 I ++P F + KF + +++ + + G ++ + L ++ F G + P Sbjct: 119 DAIRQAPYFQ-TEGKFDNSKYLALVNQMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLP 177 Query: 175 SNLLLDQA-KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 + QA + R V L+ + + A ++ L ++++ K+++ APE +IS Sbjct: 178 AEA---QAMSELILQQRDVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKIS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 +I D + KI ++ +++ A Y+ +K Y PE R + F + +A A LKKG Sbjct: 235 FIAMDAAAMQDKITVTEEDITAYYDLHKSSYTQPEQRNYSVIQFKTEADAKAALDELKKG 294 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ + G PD + AD + +L+ KG + V+ S GY+I Sbjct: 295 ADFATIAKEKSTDIISRKNGGELGWLEPDTT-ADELKQANLSDKGQLSDVVKSSVGYLIV 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++IKP EV +A Q++ KA Sbjct: 354 RLNDIKPEQVKPLSEVHDALAKQVKQEKA 382 >gi|323498280|ref|ZP_08103282.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM 21326] gi|323316708|gb|EGA69717.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM 21326] Length = 619 Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 120/529 (22%), Positives = 230/529 (43%), Gaps = 25/529 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + +G+ T VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAGN-TAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ + K +LD +V+ ++Q E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLIEQHAETLGLRVSDAQVRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF D++ + L R G + + ++ + L R ++ Sbjct: 120 MIVEMPQFQA-DGKFDQDIYQASLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLAA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V+ + L A S + ++E+ Y PE +++YI Sbjct: 179 EVEAQAKLLTQTREVETLTLPLSDFAAKVKLSEEDIQAYYEQNPQRYTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I IS ++ + Y+++ +KY S E R V ++ +Q +A L G Sbjct: 239 AAQQLKDAITISEEQAKKYYDEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ G + SLG ++ + D + ++ F L G+ T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFGLNNVGEVTELVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKI 410 + +K S + EV +I +++ +A ++ E LE+ S+D+ + Sbjct: 358 KLDELKASVAKPYTEVAAEIKQELKDQQAIDQFYELQSELEKVAFEFPDSLDDAA---NA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V + DF + E+ P Q + K+D L+ + P+ + V++++ Sbjct: 415 VDAKIETTDFISQ-ADAPELLKTPAVLQAILSPEVKEDGLNSEVIEVAPE-HVIVVRVED 472 Query: 471 SIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 ARD LEEV T V + VK + A++LV E KEGK Sbjct: 473 ---ARDETVLPLEEVRTQVTETLAKVKGEQSAIELADKLVAEL-KEGKQ 517 >gi|24111825|ref|NP_706335.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri 2a str. 301] gi|30061943|ref|NP_836114.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri 2a str. 2457T] gi|24050617|gb|AAN42042.1| putative protease maturation protein [Shigella flexneri 2a str. 301] gi|30040187|gb|AAP15920.1| putative protease maturation protein [Shigella flexneri 2a str. 2457T] gi|281599781|gb|ADA72765.1| putative protease maturation protein [Shigella flexneri 2002017] gi|332760732|gb|EGJ91020.1| PPIC-type PPIASE domain protein [Shigella flexneri 4343-70] gi|332761539|gb|EGJ91821.1| PPIC-type PPIASE domain protein [Shigella flexneri 2747-71] gi|332768363|gb|EGJ98547.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71] gi|333008057|gb|EGK27533.1| PPIC-type PPIASE domain protein [Shigella flexneri K-218] gi|333021934|gb|EGK41182.1| PPIC-type PPIASE domain protein [Shigella flexneri K-304] Length = 623 Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 140/652 (21%), Positives = 285/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|57239078|ref|YP_180214.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] gi|58579021|ref|YP_197233.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] gi|57161157|emb|CAH58070.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] gi|58417647|emb|CAI26851.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] Length = 630 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 148/651 (22%), Positives = 287/651 (44%), Gaps = 59/651 (9%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 S+ + AK+ L+VL + + LFS S V +G++K+ F ++ EL Sbjct: 3 SKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELRY 62 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 I Q + + E+ + +L+ L+ L +F + L+ V I F Sbjct: 63 IQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYFQ 122 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQA 182 ++ F F + L+ G+ E+ YI + ++ GG P N L D Sbjct: 123 DENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGG--PQNNYLQYYPDLT 180 Query: 183 KRF---YFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRA--PEYKRISY 234 K+ ++R+VD I ++ P I D P+ L +E+ K N PE + I Y Sbjct: 181 KKILQNLHQSRTVDIIEIS----PVINDISIPNMEELKSLYEEKKKNNSLVFPESRDIEY 236 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + + K +S +E+ +E K + +I + LVF + +A+ A L GK Sbjct: 237 VTINYENFITKATVSQEEIDSEI---KAEGLDDQIDIL-NLVFSAKSDAENALSELNNGK 292 Query: 295 KFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 F + + S L I+L + +K +PD + + +FSL K+G+ +P++H FG+ I V Sbjct: 293 TFDSIVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKV 350 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++ QE+ K I+ ++ KA++ + + + + + + GTS+ EI++ + I Sbjct: 351 TSVHKISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNL-PI 409 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 D +G ++ GK+V+ + + G L++ + + V++ + Sbjct: 410 KTITTDISGYNLSGKKVSISEANPNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQ 468 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 AR++ +E ++ +W+ + ++ SK Q +L K G + + N+ LL NQ Sbjct: 469 AREKTFDESKQELVDEWQNNFKSRKL-SKLTQEILIKLKSGIDIQ----NIDGVLLKPNQ 523 Query: 534 ------INRMDNENKFFGYDGISQVFS-GPVEMVKCF-----PIENGLSYVVFK------ 575 + +DN + + + ++++F+ E+ K + P E + V K Sbjct: 524 VVYRNSVASIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPE 583 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 V+ + QEK L+ + L + +I YL ++YSV ++ LI+ Sbjct: 584 QVSTVDLKATQEK------LSNNNTESLKNQLITYLTNKYSVKINRKLIEN 628 >gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] Length = 633 Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/407 (21%), Positives = 189/407 (46%), Gaps = 36/407 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + W+A + + ++ +PF +WGL + F SG V + N Sbjct: 1 MLQAIRDRASGWLAYVIIGLITIPFAVWGLGE-YFGGSGPLVAAEVNGTDIQVRDVHNEA 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +++ G + + G+ + L+ L+ L Q + G +A + EI Sbjct: 60 RAQRDQMARMFGGQIPDDLLDEEGIRMQALETLIRQELLRQAADSAGFKAAGDSILREIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR----PSN 176 P+F + +FS + + L + ++ ++ + + R+ ++ GG++ P++ Sbjct: 120 GMPVFQ-EGGQFSRERYAQLLNAQRLSPSDF----ERDIGRSIILSQLQGGIQATGFPAD 174 Query: 177 LLLDQAKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L+D R + R + + +++ P + D + + ++E +D++ E RI+Y Sbjct: 175 ALVDDFSRLRNQTRVASWRIFPVDDFDQPDVVD--DKAIEAYYEANQDDFTTEERVRIAY 232 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----FQS 289 + D E +++S D+++ YE N+ +Y PE+R V Q+ + E EA Sbjct: 233 LQLDPEALEDAVDVSEDDVRQHYEVNRSRYEEPELREVRQIRIQDTGEEGEAKINELRDR 292 Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 L G+ F +LAE ++G SL +I+ G D +L IF+L +G + Sbjct: 293 LDDGEDFAELAEAYSEDSLSADRGGSLGEIARGDL------DRTLETIIFTL-PEGLISR 345 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + G+ I V++I+ + F++V+ ++ +R +++E+++ D Sbjct: 346 PVRTDRGWFILEVTSIQEARPQPFEDVRDEVERDLR-DRSAEQMQID 391 >gi|110804469|ref|YP_687989.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 5 str. 8401] gi|110614017|gb|ABF02684.1| putative protease maturation protein [Shigella flexneri 5 str. 8401] Length = 623 Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 139/654 (21%), Positives = 283/654 (43%), Gaps = 60/654 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-IDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIGKNL 524 ++ E P + L +V VK + K ++ A +L+ L+ K + + G Sbjct: 467 RVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKF 526 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VV 573 G + + G D ISQ F+ P P ++ SY V+ Sbjct: 527 GEPKILSRS-----------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVL 569 Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 570 LALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|88607320|ref|YP_505198.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum HZ] gi|88598383|gb|ABD43853.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum HZ] Length = 601 Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/469 (21%), Positives = 218/469 (46%), Gaps = 18/469 (3%) Query: 35 FSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93 S SG+ V+ +G + +P + ++ EL + + + ++ + G+ + +L N+ Sbjct: 4 LSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKMLQHKLSDAQINQFGIKEVVLKNM 63 Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 ++ +++F D+G+ + I +F + F + + + LA G+ E Y++ Sbjct: 64 IADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGVFDQERYEAVLADSGMTESSYVN 123 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVP-AIAD 207 L T ++ ++ L ++R D + +++ V + +D Sbjct: 124 KIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGLLQHRVADIVEISSDAVDISGSD 183 Query: 208 PSNAVLTQWFE-KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 S+ L + FE +YK++ PEY+ YI+ + + +S+ E+ E KN E + Sbjct: 184 ISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEI-KNSELH-- 240 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326 + R V LVF ++ EA+ A+++ ++GK F +L + G ++ DI+L + SK+ +P V + Sbjct: 241 -DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLP-VGVR 298 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + +F+L +G+ + + G+ I V +++K+ I++ +R KA E + Sbjct: 299 NVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELLVS 357 Query: 387 DYKRLEEFLALGTSMDEISRR--EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL-LFRV 443 + K+ + ++ G S++E+ +I + L D G D G V P + + F Sbjct: 358 NVKKANDMISRGASLNELKDMFGARISGV-LTNFDMHGLDKSGNLVKDFPLQLGINAFTT 416 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 + K + +Y V + E +P R R LEE + + ++WK+ Sbjct: 417 LAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEESRSILTEEWKS 465 >gi|333008127|gb|EGK27602.1| PPIC-type PPIASE domain protein [Shigella flexneri VA-6] Length = 623 Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/390 (23%), Positives = 182/390 (46%), Gaps = 20/390 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +I+P+ S EV+ DIA +++ KA Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 380 >gi|16126137|ref|NP_420701.1| rotamase family protein [Caulobacter crescentus CB15] gi|221234908|ref|YP_002517344.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000] gi|13423343|gb|AAK23869.1| rotamase family protein [Caulobacter crescentus CB15] gi|220964080|gb|ACL95436.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000] Length = 654 Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 128/597 (21%), Positives = 245/597 (41%), Gaps = 23/597 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML RK +++ A + +L V F I+G+SD GS V+S G + + F + Sbjct: 1 MLAGFRKFAKSPFAVVLFGLLIVSFAIFGISDVFKGPQGSG-VISAGSRSMSAIDFKQRF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG------LEADHGR 114 + Q+ G + ++A G+D++I+ LV +L + +G L AD Sbjct: 60 DNYRKAMEQQNGTTLTPDQAVEQGVDRQIVQELVLQESLAAALHKMGVAPSDKLVADT-- 117 Query: 115 VWGEIARSPL----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 V ++++ P F KF + + + + G+ + Y +++T Sbjct: 118 VHEQMSQLPPTTRPFDPITGKFDSRAYATLMQQNGLTPETYEASLRDEIAQTHFFSAIAD 177 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 G++ + + E R V V+N V P++A LT + ++ D PE + Sbjct: 178 GLKAPRIYAALQGAYLLEAREVSAFVVNPSTVQRPNPPTDAQLTAFMKENADRLTRPETR 237 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +S + E + I+ ++Q ++ K+ PE RT+ Q+ P+ K A Q L Sbjct: 238 VLSIMRVSATALEPSVTINPADVQKAFDFRKDSLARPETRTIVQIAAPDAKAAAVISQRL 297 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 KG+ +A+ GK + + L K +PD +AD+ F+L + G + I G G + Sbjct: 298 GKGEDPAAVAKAYGK--TPLVLTDKPKSAVPDRKVADAAFAL-QTGQVSGPIIGDLGVAV 354 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V+ I P + V+ I ++R A K E + ++ G + + + Sbjct: 355 VKVTKITPGAVATLDSVRPQIEAEVRSQTAQAKAYEQTQTYQDARDAGADLISAASKAGA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + I V G D G+ A + ++ F + V G Y V+++ Sbjct: 415 LVITTAPVTAQGTDQMGQPFAGL--TPDIIKTAFDLSQG-GESELVEAGKGEYYAVKVER 471 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL- 529 +PA L EV + W + A+ + +KA++L K+G++ + +++ Sbjct: 472 IVPAALPPLAEVKPQLTAVWFGQEMAKRMKAKADELAARV-KKGESLEAVATAAQSNVQK 530 Query: 530 TTNQINRMDNENKF-FGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 + R + + G + + F+ P + + G +YVV K+ + P Sbjct: 531 IPGGLTRQNAQQHVALGQEFLGAAFTAKPGAVFTARAGQQGQAYVVAKLDAVRAAPT 587 >gi|238919016|ref|YP_002932530.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella ictaluri 93-146] gi|238868584|gb|ACR68295.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 626 Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 175/393 (44%), Gaps = 24/393 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGD-YAAKVDGQEIGRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G V+ L K++L ++ LDQ+ + + L +V Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN F + ++ +AR G++ D Y +++ + V + G + Sbjct: 120 AIRAMPYFQ-SDNHFDNAKYLDMVARLGLSP----DTYAQLVRQQLVTQQLIQGFTATGF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + + R V ++ + + S+A L ++++++ ++ APE ++ Sbjct: 175 TLPAEVNALAALTMQQRQVSLATIDISKLMPLQQVSDAELQGYYQQHQSSFIAPETVKVR 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D K+ +SN E+ A Y+++K + P + + EA L G Sbjct: 235 YIEMDAAAINDKMTVSNAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAGQLASG 294 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F LA+E KS IS LG +E PD A L+ KGD + I S G Sbjct: 295 ADFATLAKE--KSTDIISRKNGGELGWLEQETTPDEIRA---AKLSHKGDVSAPIASSVG 349 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 Y+I ++ I+P+ EV+ +IA++++ KA Sbjct: 350 YLIVRLNGIQPAVVKPLSEVRAEIADKVKQQKA 382 >gi|212636023|ref|YP_002312548.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella piezotolerans WP3] gi|212557507|gb|ACJ29961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella piezotolerans WP3] Length = 619 Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 105/420 (25%), Positives = 195/420 (46%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR+ S+ +AK LV++ + F G+S L GSST V +V +++ S+ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL----GSSTEVAAATVNGEEISNSALE 56 Query: 58 NSWKQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E G + Q++G + ++ A + + +L+ LV+ LDQ ++GL + Sbjct: 57 QAYENERGRLEQQLGDMFSTLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I + P F D +F +D + + L + G + D ++R +V VG Sbjct: 117 IRTAIMQEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRVDMTRRQLVATLVG---- 171 Query: 175 SNLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S +L + + R ++Y+V+++ A A ++ + ++ + PE Sbjct: 172 SEFVLPGEAEYLANIQGQTRDINYLVIDSTPFLAAASVTDEQIQTYYNSNLGQFVRPEIV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF----PNQKEADEA 286 ++YI D + + ++ + + Y++NK +Y PE R ++ N +E EA Sbjct: 232 SLNYIELDAKQLAADVTVTEADAKTYYDENKVQYLQPEKRLAAHILIGLDEDNAEEKAEA 291 Query: 287 -FQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +Q L+ G+ F LA+ EQG L G E+ D +L F+L KG Sbjct: 292 IYQKLQNGEDFAALAKAESQDTFSGEQGGQLDWFEAGVMEPEF--DAAL----FAL-DKG 344 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 ++ V+ +FGY I +I+ F +VK+ I Q++ +A +K E L++ LA Sbjct: 345 SYSNVVKTNFGYHIIKALDIQAGAEAPFADVKEKIIAQLQEQQAVDKFYE----LQQVLA 400 >gi|167646732|ref|YP_001684395.1| rotamase family protein [Caulobacter sp. K31] gi|167349162|gb|ABZ71897.1| rotamase family protein [Caulobacter sp. K31] Length = 655 Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 113/557 (20%), Positives = 230/557 (41%), Gaps = 26/557 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFIN 58 ML R +++ +A + +L V F ++G+SD G + + R P F + Sbjct: 1 MLAGFRSFAKSPLAVVLFGLLIVSFAVFGISDVFRHPPGKWVIAAGSRDTTPADFKARFE 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 S++++ Q G + + A G+D+++L L +L + I +G+ ++ G+ Sbjct: 61 SYRKQ----QQAQGQTLTPDLAVEHGVDRQMLTQLALQESLAELIRKMGVRPSD-KLVGD 115 Query: 119 IARSPL---------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 R L F + KF ++ + LA+ + Y +++ + Sbjct: 116 TLREQLASLPPGQRPFDPINGKFDSKMYAALLAQNDLTPARYEASLRDEIAQAHLFSAVA 175 Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 +R + + E R + +N V A P++A L + +++ + PE Sbjct: 176 TSLRAPRIYSALQAAYALEGRDLAAFAINPATVEKPAPPTDAQLQAFMKEHAADLTRPET 235 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + +S F E + + ++ Y K+ + E R+ Q+V P+ K A Q Sbjct: 236 RVLSVARFSAKALENSVTVPEADVVKTYNFRKDTLGTAETRSFVQIVAPDAKAAAVIAQR 295 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 L KG + +A GK + + + K +PD +AD++F+L G + I G G Sbjct: 296 LAKGDQPAVVASAFGK--QPVFIDTKPKSALPDRKVADAVFAL-TAGQVSAPITGDLGVS 352 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + ++ I P+ S + + I +++ A K E + ++ G S+ + + + Sbjct: 353 VVKLTKITPAAMPSLESQRPAIEAELKAQAAQAKAYEQTQAYQDAHDAGASLIDAATKAG 412 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 + + + G D G+ V + P + F + + + G Y V++ Sbjct: 413 ALVLTTSPIAATGVDQTGQPVPGLTPDAVKAAFELPSGGE----SELIEAGKGEYFAVRV 468 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 ++ IP+ L E+ + + W K E + +KA+ L E K+G++ + + G + Sbjct: 469 EKVIPSAMPALAEIRGPLAQQWMVTKLLEAMKAKADALG-ERVKKGESLEAVAASAGTKV 527 Query: 529 LTTNQINRMDNENKFFG 545 INR +N +F G Sbjct: 528 QRVPNINR-ENARQFQG 543 >gi|14582889|gb|AAK69701.1|AF356511_1 putative peptidyl-prolyl cis-trans isomerase D [Anaplasma phagocytophilum] Length = 575 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 106/494 (21%), Positives = 222/494 (44%), Gaps = 19/494 (3%) Query: 11 TWV--AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 WV A + + FV F L + V +G + +P + ++ EL + Sbjct: 8 VWVVMATVLGAMAFVTFGSMIPMGKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELE 67 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 + + ++ + G+ + +L N+++ +++F D+G+ + I +F Sbjct: 68 KMLQHKLSDAQINQFGIKEVVLKNMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDA 127 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLDQAK 183 + F + + + LA G+ E Y++ L T ++ ++ L Sbjct: 128 NGVFDQERYEAVLADSGMTESSYVNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVV 187 Query: 184 RFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFE-KYKDNYRAPEYKRISYILFDVHE 241 ++R D + +++ V + +D S+ L + FE +YK++ PEY+ YI+ + Sbjct: 188 LGLLQHRVADIVEISSDAVDISGSDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDD 247 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 + +S+ E+ E KN E + + R V LVF ++ EA+ A+++ ++GK F +L Sbjct: 248 LLADVIVSDQEVDVEI-KNSELH---DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVS 303 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + G ++ DI+L + SK+ +P V + + +F+L +G+ + + G+ I V Sbjct: 304 DAGYTIEDIALNNISKDVLP-VGVRNVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITK 361 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR--EKIVSIDLPLVD 419 +++K+ I++ +R KA E + + K+ + ++ G ++E+ +I + L D Sbjct: 362 EDLEKLKEKISSNIRRQKAGELLVSNVKKANDMISRGALLNELKDMFGARISGV-LTNFD 420 Query: 420 FAGKDVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G D G V P + + F + K + +Y V + E +P R R Sbjct: 421 MHGLDKSGNLVKDFPLQLGINAFTTLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRT 480 Query: 479 LEEVLTDVKKDWKT 492 LEE + + ++WK+ Sbjct: 481 LEESRSILTEEWKS 494 >gi|238898000|ref|YP_002923680.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465758|gb|ACQ67532.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 624 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 120/535 (22%), Positives = 234/535 (43%), Gaps = 39/535 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E R +++ KI L + + F+ GL + F + V V +K+ + + Sbjct: 1 MMEYFRTSTKNLTLKIILFFIVLSFIAGGLG-SYFIGRATDYVAKVNGEKISRAQLEQAL 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + L KK++D L++ + Q+ +GL+ D V Sbjct: 60 QNERHRLKQQLGEHFLALADNKDYMQQLRKKVIDQLINQILIVQYTHHLGLKIDDEHVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F DN+F + +++ ++ G E+ + + L ++ +F + Sbjct: 120 TIRKMSYFQ-TDNQFDNKKYLNLISNMGYTPDEFAELQRQQLINDQLLQIFGNS---EFV 175 Query: 178 LLDQAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L ++ KR + R V LN ++ + +++K K+ + PE ++S+ Sbjct: 176 LPNEIKRISALLLQKRHVRLATLNLNTFQNRQKVTDEEIKDYYDKNKNTFTNPEQVKVSF 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I+ D E KI ++ E++ YE++ ++ PE++ + +KEAD LKKG Sbjct: 236 IIMDAESMENKITVNKSEIKDFYEQHSAEFIQPELKNYSVIQLKTKKEADTTLDKLKKGA 295 Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSF 346 F LA + KS+ IS LG PD ++ D I +L +KG + VI S Sbjct: 296 LFSDLA--KNKSIDSISRKKGGQLGWLE----PDTTV-DEIKQANLTEKGQLSGVIESST 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I +++IKPS+ V+ + +++ KA + K++ E A+ + ++ Sbjct: 349 GYFIFRLNDIKPSYVKPLSIVRNQLIEKIKQEKAIQAYYVLQKKVSE--AMINNHKSLAS 406 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT------VALPD 460 E + + F G++ E+ P ++ +F D K T + L Sbjct: 407 AETVSGLKAQHTAFFGRNDVPSELNIKP----VIKAIFDGDWVAKKTQTGSDADMINLDG 462 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + +++ E P R L++V V+K + K +++ + + L KEGK Sbjct: 463 DRAVVIRVDEHKPKRIEPLKKVRDKVQKQIRAQKAQKQILVEGEKF-LAALKEGK 516 >gi|237730418|ref|ZP_04560899.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2] gi|226905957|gb|EEH91875.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2] Length = 624 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 137/647 (21%), Positives = 285/647 (44%), Gaps = 46/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNFAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ LV A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLVDEALLDQYSRELKLNISDDQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D KF ++ + + + + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+ Sbjct: 174 FMLKGETDELAALVAQQRIVREATIDVNALAAKQSVTEQEVASYYEQNKNNFMTPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAAAMQETA--SDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D + D + L +KG + VI S G+++ Sbjct: 292 GGDFAALAKEKSADIISARKGG-DMGWLEDSTTPDELKNAGLKEKGQLSGVIKSSVGFLV 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 A + +++P+ E + +IA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 ARLDDVQPAQVKPLSEARDEIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWV 466 + + + +D +E+ P + ++F + G++ + + DG +V Sbjct: 407 QAAGMKAVETGWFSRDSLPEELNFKPVAD-IIFNGGLVGENGTPGSNSDIITVDGDRAFV 465 Query: 467 -QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +I E + L EV V K K ++ A++L+ + K GK + K G Sbjct: 466 LRIAEHKAEAVKPLAEVKEQVTALVKHNKAEQQAKLDADKLLADL-KAGKGDEAM-KAAG 523 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKVTNSK 580 S ++R G D +SQ G P + + + N + + V+ + K Sbjct: 524 LSFGEAKTLSRT-------GQDPLSQAAFGLSLPAKDKPSYGVANDMQGNVVLLALDEVK 576 Query: 581 VG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 G P +K + +TQ + + +++++ L+ + + D L Q+ Sbjct: 577 AGSMPEAQKKAMVQGITQNNAQIVFEALMSNLRKAAKIKIGDALEQQ 623 >gi|126173842|ref|YP_001049991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS155] gi|125997047|gb|ABN61122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS155] Length = 621 Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR S+ +AK LV++ + F G+S L GS+T V V + + Sbjct: 1 MLEKIRDGSQGLIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G ++++ + + +L+ LV+ +DQ + +GL + Sbjct: 57 QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + + P F D KF +D + + L + G + + D ++R + VG Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172 Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +L +AK+ + R V Y+V+++ A A ++ + +++ + + +PE Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279 + Y+ + + K +S++E QA YE++K +Y S E R LV P Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292 Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 Q ++ F L K L+ EQG L G + D + ++F+L K Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + V+ FG+ I + +++P TV F +VK I Q+ +D K +++F Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395 Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +L + + D +S K V +D+ +D V A K L+ F + Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSET 451 Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 L + L + V++KE A L EV ++ + K + E +KA + Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQE 511 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559 L+ + K G D+G L+ ++ R D + G + F P + Sbjct: 512 LMAQV-KAGAT--DLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611 V + NG + V N+ G D+ ++ L Q +N + L+DS+ A K Sbjct: 558 VDTVGLANGYAVVALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614 Query: 612 SQYSV 616 Y V Sbjct: 615 VLYPV 619 >gi|329889376|ref|ZP_08267719.1| rotamase family protein [Brevundimonas diminuta ATCC 11568] gi|328844677|gb|EGF94241.1| rotamase family protein [Brevundimonas diminuta ATCC 11568] Length = 643 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 128/573 (22%), Positives = 241/573 (42%), Gaps = 52/573 (9%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 A W A +F +++ FLI G +F+ G ++S G + V + F +++ + Sbjct: 9 AKSKWAAGLFALIILS-FLIVGAQSDIFANLGPRHIISAGDRSVDSNQFRGDFERVRANL 67 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 ++ G V+ + L ++ LD+ + G+ V EI + P F Sbjct: 68 QEQAGRPVSYDDMVKENLHQQYLDSQTQRLGFLDWAYKAGIRPGKELVLAEIRKIPAFFN 127 Query: 128 K-DNKFSHDVFVSRLAREGIN----EKEYIDHYTKMLSRTDVVG--MFVGGMRP---SNL 177 + +F D++ LA++ + E++ D Y T VG +F G P + L Sbjct: 128 QITGQFDKDLYAQALAQQNLTSEMLEQDLRDQYV-----TSHVGSAVFAGLQAPRVYAAL 182 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L QA E R + + P++A LT + ++ + R+PE++ IS +LF Sbjct: 183 LAGQA----LETRDGRWFSVTQDMAGRAGAPTDAQLTAFMKENEARLRSPEFRMISLVLF 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + ++ +++Q YE K PE RT L P ++ AD+ L+ GK Sbjct: 239 TPGPNDPRPTVTEEQIQERYEFRKAALADPEKRTFVTLTVPTKEAADKIAADLRAGKAPA 298 Query: 298 QLAEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 ++A+ ++I LG + + + D ++ ++F LA P I G G+ +A ++ Sbjct: 299 EVAKA-----NNIQLGDYKATPQAAVGDPAVGAAVFGLAVDQVSAP-IQGRLGFTVAKLA 352 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVK-EDYKRLEEFLAL---GTSMDEISRREKI 410 I+ V+ + + + +++ +E VK Y ++E+F G ++ + + K Sbjct: 353 AIQAGQAVTLESARPALTQELQ----AEAVKAATYAKVEQFEKARQEGKNLADAATAAKA 408 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I LP G+ G+ + A Q+L + D + DG Y V++ + Sbjct: 409 RVIQLPPFTQQGQLPDGQPMNA---PRQVLESAYTLTKGGESD-VIDAGDGQYFAVRLDD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P+ L+EV + + W + A +S+KA QL + G++ + GA L Sbjct: 465 IRPSALPTLDEVRAPLGQQWTLRENARLLSAKAEQLAGRV-RAGEDIAKVAAEAGAPLTV 523 Query: 531 TNQINRMDNENKFFGYDGI---------SQVFS 554 + + G DG+ QVFS Sbjct: 524 RTGVQQSRESQAQVG-DGVLRGLFGQSKGQVFS 555 >gi|197284031|ref|YP_002149903.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320] gi|194681518|emb|CAR40403.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320] Length = 625 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 131/539 (24%), Positives = 249/539 (46%), Gaps = 47/539 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR + KI L V+ + F++ G+ LFS SG + V K+ + ++ Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q + + +G S + G + ++ L+ L++ A LDQF +++G+ A ++ Sbjct: 60 QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + +V L I+ D + + + + + ++ ++ Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDA----DAFAEGIRQNLINQQLRYSIQGTDF 174 Query: 178 LLD-QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L+ + K F ++R+V L+ + S+ L ++++ + AP ++S Sbjct: 175 ALESEVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + + I IS+DE++A Y+ N ++ P + LV ++ A EA +LK G Sbjct: 235 YIQLEAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNG 294 Query: 294 KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 F+ L +E Q SL I++G + +P+++ A SL +KG + + Sbjct: 295 ADFVTLVKEKSIDTFSAKQDGSLGWITIG----QELPELANA----SLTEKGQISQPVKI 346 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE- 403 S GY I + +IKPS F ++K D+ +MR KA +D+ L++ ++ S D Sbjct: 347 SNGYAIFRLDDIKPSVVKPFDDIKADLLVKMRENKAI----DDFFALQQKVSQAASNDND 402 Query: 404 -ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---DD--PLSKDH-TV 456 ++ K ++ + D+ ++ V A E+L +FG DD P + V Sbjct: 403 TLATAAKAGNVTVINTDWFDEN----NVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMV 458 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 L + S V+++ PA + L++V V K K ++ ++++A +L L KEGK Sbjct: 459 TLGNDSAYIVRVEGYKPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKL-LAALKEGK 516 >gi|149192497|ref|ZP_01870682.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1] gi|148833670|gb|EDL50722.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1] Length = 432 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/387 (22%), Positives = 176/387 (45%), Gaps = 16/387 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E IR+ + KI L ++ + F+ G+ + G+ T VG ++ F ++ Sbjct: 1 MMERIREGVNSIAVKIILGLIILSFVFAGVGSYIAGGIGN-TAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ + + K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPSYVASFRKSVLDRMINDVLLEQHAESLGLRISDAQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F D KF D++ + L R G + + ++ + L R ++ G PS Sbjct: 120 MILEMPQFQ-NDGKFDQDIYQATLRRAGFSADSFAEYLRRDLVRNQLLTALQGSEFTLPS 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L + + R + + L+ A ++ + +++E+ + PE +++YI Sbjct: 179 EIELQ--SKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPEQVKVAYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKG 293 + ++++++DE+Q Y+++ +KY + E R V ++ E A L G Sbjct: 237 ELSAQALKDQVKVTDDEIQKYYDEHLDKYSTSEQREVSHILVQGDDEAKAQAILDELNAG 296 Query: 294 KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F LA+E+ G S SLG ++ + D + ++ F+L GD T ++ FGY Sbjct: 297 ADFATLAKEKSEDIGSSEEGGSLGWIERD-VMDPAFEEAAFALKNVGDTTGLVKSDFGYH 355 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMR 376 I + IK S + EVK +I +++ Sbjct: 356 IIKLDAIKASESKPLAEVKDEIIAELK 382 >gi|56479244|ref|YP_160833.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] gi|56315287|emb|CAI09932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] Length = 633 Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 32/408 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R R +A+I L +L VPF +GL S G + + +VG K+ + F + Sbjct: 1 MFDAVRNNKR--IAQIILALLIVPFAFFGLDSYFTSGPGGNEIATVGGSKISMNEFDQAL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q +G V+ S + + +++NLV+ L D GL ++ IA Sbjct: 59 RDQQDRLRQSMGGQVDRAMLESEAMRRSVVENLVNQRLLAMHAADSGLVVTQQQLQQVIA 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D +FS + + + + +G+ + + L R V + VG + Sbjct: 119 TVPAFQ-EDGRFSLERYEAAVRAQGMTPAMFEARLGQDL-RVQQVALAVG----QSAFTA 172 Query: 181 QA--KRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 QA +RF E R V + + A + + ++++ + + P R Y+ Sbjct: 173 QASVQRFLEAQLEERKVSELKFSPDAFLAQVELPDDAAKKYYDANPERFERPARLRAEYL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------------PNQKE 282 +FD + K++ +S+DE++ YE N ++ PE R ++ ++K Sbjct: 233 VFDENALLKQVSVSDDEIRKFYEANTARFGQPEERNARHILIEAAADAPAEEVAKASEKA 292 Query: 283 ADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 A Q ++F +LA ++ G + LG F + + S D++FSL +KG Sbjct: 293 AALLAQVRANPERFAELAKAESQDPGSAARGGELGFFGRGAMVK-SFEDAVFSL-EKGQI 350 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + V+ FG+ I V +IKP+ F+EV+ +IA +++ AS ++ E Sbjct: 351 SDVVRSDFGFHIIQVVDIKPAKARPFEEVRDEIAEELKRQAASRRLAE 398 >gi|304409715|ref|ZP_07391335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS183] gi|307304071|ref|ZP_07583824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica BA175] gi|304352233|gb|EFM16631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS183] gi|306912969|gb|EFN43392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica BA175] Length = 621 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR S+ +AK LV++ + F G+S L GS+T V V + + Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G ++++ + + +L+ LV+ +DQ + +GL + Sbjct: 57 QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + + P F D KF +D + + L + G + + D ++R + VG Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172 Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +L +AK+ + R V Y+V+++ A A ++ + +++ + + +PE Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279 + Y+ + + K +S++E QA YE++K +Y S E R LV P Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292 Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 Q ++ F L K L+ EQG L G + D + ++F+L K Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + V+ FG+ I + +++P TV F +VK I Q+ +D K +++F Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395 Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +L + + D +S K V +D+ +D V A K L+ F + Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKATPLFSRD----NVPAALNKPDLVKAAFSET 451 Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 L + L + V++KE A L EV ++ + K + E +KA + Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQE 511 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559 L+ + K G D+G L+ ++ R D + G + F P + Sbjct: 512 LMAQV-KAGAT--DLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611 V + NG + V N+ G D+ ++ L Q +N + L+DS+ A K Sbjct: 558 VDTVGLANGYAVVALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614 Query: 612 SQYSV 616 Y V Sbjct: 615 VLYPV 619 >gi|330011537|ref|ZP_08307123.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3] gi|328534154|gb|EGF60789.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3] Length = 639 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 134/645 (20%), Positives = 285/645 (44%), Gaps = 42/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 16 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 E + Q++G N ++ + +++L+ L+ + LDQ+ ++GL +V Sbjct: 75 ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 132 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173 I ++ F + KF + F +A+ G+ +Y L+ ++ G M Sbjct: 133 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 191 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 P DQ + R V +N + A S+ + ++++ + + APE R+S Sbjct: 192 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINVFWQQNQARFMAPEQFRVS 249 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ S+DE+Q+ Y+++K+++ P+ + + +A L+KG Sbjct: 250 YIKMDAASMQESA--SDDEIQSWYDQHKDQFTQPQRSRYSVIQTKTEADAKAVLAELQKG 307 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + G ++ D S + L +KG + VI S G+++A Sbjct: 308 ADFATLAKEKSTDIISARNGG-DMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVA 366 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREK 409 + +++P+ +V+ DIA +++ EK + Y L++ ++ S D ++ + Sbjct: 367 RLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLASAAQ 422 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467 + + + + G+D +E+ P + + + G++ + + DG +V + Sbjct: 423 VAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLR 482 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I E + L EV V K K ++ +A++L L K+GK + K G S Sbjct: 483 ISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKL-LAALKDGKGDEAM-KAAGLS 540 Query: 528 LLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKVG 582 ++R G D +SQ+ F+ P+ + + + + + V+ + K G Sbjct: 541 FGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAG 593 Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 P ++K + +TQ + +++++ L+ + + D++ Q+ Sbjct: 594 SMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 638 >gi|307293346|ref|ZP_07573192.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum L-1] gi|306881412|gb|EFN12628.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum L-1] Length = 649 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 112/480 (23%), Positives = 204/480 (42%), Gaps = 32/480 (6%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFS 54 ML + R+ R+ + A IFL ++ F++ ++ F S+ TV G K+ + Sbjct: 1 MLSVFRRFIRSKFGAFTALIFLAIIAAAFIMGDITSGKFGSSIGSGETVAKAGGSKLTMA 60 Query: 55 SFI--------NSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 F N+ + G+ +IG F+ G ++ D LV+ TL ++ D Sbjct: 61 EFQDRVQRVFENARRSNPGL---QIGDFLAQ-------GGGAQVYDQLVASMTLKEYAGD 110 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 + V +IA+ P F FS + F L RE I E+ D + + ++ Sbjct: 111 QKVHISKRLVDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDIGREILERQML 170 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G++ S+ ++ E R V+ IA+P++A L +++K Y Sbjct: 171 APLGLGVKLSDSMVLPYASLLLEARQGTIAVIPASAFKDIAEPTDAQLGDFYKKNAARYT 230 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 PE +RI Y + DV + + ++ E+ Y +NK Y + E R EQL+ P + A Sbjct: 231 IPEQRRIRYAVIDVERFAQAAQPTDAEIATYYNQNKAAYAARESRDFEQLILPTEAGAKA 290 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K GK A++ G ++S++ S + + AK+G+ + GS Sbjct: 291 IADQVKGGKSLAAAAQDAGLAVSELKDQSRQGLAATASAAIANAGFAAKQGELVGPLRGS 350 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G+ + V+ +K + + VK +I +R K + + ++E+ +A G S +E+ Sbjct: 351 LGWALLRVTAVKSTPARTLDAVKGEIVATLRTQKEKRLLNDFTGKIEDQVANGGSFEEVV 410 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDD-----PLSKDHTVAL 458 + + P + +GK V+ + LL VF +DD P++ D AL Sbjct: 411 KDNGLKLETTPFLISSGKQVEDAAYQLPADVQPLLAPVFAMSQDDDAQLIPIAADKRYAL 470 >gi|84387739|ref|ZP_00990755.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01] gi|84377422|gb|EAP94289.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01] Length = 621 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/469 (20%), Positives = 202/469 (43%), Gaps = 15/469 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIARGEFEQAY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ S L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + Q++ + Y PE ++SYI Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKGIELTDEQIEQYYSENPQAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ E A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LAEE+ +G + + + D + D+ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALENIGDTTGLVKSDFGYHIIK 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIV 411 + +K S + EV +I ++ A ++ E LE+ S+D+ + + + Sbjct: 359 LDEVKASQAQPYTEVAAEIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSA---EAI 415 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + + DF + V EV P Q + K+D L+ + P+ Sbjct: 416 NAKITTTDFISQ-VDAPEVLMTPAVMQAILSPEVKEDGLNSEVIEVAPE 463 >gi|218710170|ref|YP_002417791.1| peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32] gi|218323189|emb|CAV19366.1| Peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32] Length = 621 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/400 (21%), Positives = 176/400 (44%), Gaps = 10/400 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIARGEFEQAY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ S L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + Q++++ Y PE ++SYI Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKTIELTDEQIEQYYQENPAAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ E A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LAEE+ +G + + + D + ++ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEEAAFALENIGDTTGLVKSDFGYHIIK 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +K S + EV DI ++ A ++ E LE Sbjct: 359 LDEVKASQAQPYTEVATDIKQELLDQHAVDQFYEQQTELE 398 >gi|313646932|gb|EFS11389.1| PPIC-type PPIASE domain protein [Shigella flexneri 2a str. 2457T] gi|332763740|gb|EGJ93978.1| PPIC-type PPIASE domain protein [Shigella flexneri K-671] Length = 622 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 139/651 (21%), Positives = 284/651 (43%), Gaps = 56/651 (8%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFN 59 Query: 62 QELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 SERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 AIFATPAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDF 173 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D+ + R V ++ + A + + ++E+ K+N+ PE R+S Sbjct: 174 MLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVS 233 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI ++ + S+ ++Q+ Y+++++++ P+ + + EA L KG Sbjct: 234 YIKLVAATMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKG 291 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIV 350 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREK 409 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E+ Sbjct: 351 RLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAEQ 406 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467 + + KD +E+ P + + + G++ + + DG +V + Sbjct: 407 AAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLR 466 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 VSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLK 524 Query: 528 LLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKV 576 ++R G D ISQ F+ P P ++ SY V+ + Sbjct: 525 FGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLAL 571 Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 DEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622 >gi|217973906|ref|YP_002358657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS223] gi|217499041|gb|ACK47234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS223] Length = 621 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR S+ +AK LV++ + F G+S L GS+T V V + + Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G ++++ + + +L+ LV+ +DQ + +GL + Sbjct: 57 QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + + P F D KF +D + + L + G + + D ++R + VG Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172 Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +L +AK+ + R V Y+V+++ A A ++ + +++ + + +PE Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279 + Y+ + + K +S++E QA YE++K +Y S E R LV P Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292 Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 Q ++ F L K L+ EQG L G + D + ++F+L K Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + V+ FG+ I + +++P TV F +VK I Q+ +D K +++F Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395 Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +L + + D +S K V +D+ +D V A K L+ F + Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSET 451 Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 L + L + V++KE A L EV ++ + K + E +KA + Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQE 511 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559 L+ + K G D+G L+ ++ R D + G + F P + Sbjct: 512 LMAQV-KAGAT--DLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611 V + NG + V N+ G D+ ++ L Q +N + L+DS+ A K Sbjct: 558 VDTVGLANGYAVVALDKINAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614 Query: 612 SQYSV 616 Y V Sbjct: 615 VLYPV 619 >gi|153000126|ref|YP_001365807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS185] gi|160874748|ref|YP_001554064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS195] gi|151364744|gb|ABS07744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS185] gi|160860270|gb|ABX48804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS195] gi|315266990|gb|ADT93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS678] Length = 621 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 151/665 (22%), Positives = 276/665 (41%), Gaps = 95/665 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR S+ +AK LV++ + F G+S L GS+T V V + + Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDIITKAELE 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G ++++ + + +L+ LV+ +DQ + +GL + Sbjct: 57 QAYQSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + + P F D KF +D + + L + G + + D ++R + VG Sbjct: 117 IIAAVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVG---T 172 Query: 175 SNLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +L +AK+ + R V Y+V+++ A A ++ + +++ + + +PE Sbjct: 173 EFVLAGEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVS 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN----------- 279 + Y+ + + K +S++E QA YE++K +Y S E R LV P Sbjct: 233 LEYVELNAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE 292 Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 Q ++ F L K L+ EQG L G + D + ++F+L K Sbjct: 293 DLAKQLDSGADFADLAKANSDDTLSAEQGGKLDWFEPG------VMDPAFDAALFAL-NK 345 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + V+ FG+ I + +++P TV F +VK I Q+ +D K +++F Sbjct: 346 GQHSAVVKTDFGFHIIKLLDVQPGVTVPFADVKAKIVAQL----------QDKKAVDQFY 395 Query: 396 ALGTSM--------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +L + + D +S K V +D+ +D V A K L+ F + Sbjct: 396 SLQSKLADTSYEVPDTLSETAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSET 451 Query: 448 DPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 L + L + V++KE A L EV ++ + K + E +KA + Sbjct: 452 VMLKGLNSEVIELEPNHVVVVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQE 511 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNENKFFGYDGISQVFSGPV----EM 559 L+ + K G D+G L+ ++ R D + G + F P + Sbjct: 512 LMAQV-KAGA--MDLG------LVAKAKLGRGAQDVDAAIVG-----KAFQMPTPSTSPV 557 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLK 611 V + NG + V N+ G D+ ++ L Q +N + L+DS+ A K Sbjct: 558 VDTVGLANGYAVVALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAK 614 Query: 612 SQYSV 616 Y V Sbjct: 615 VLYPV 619 >gi|310766848|gb|ADP11798.1| putative protease maturation protein [Erwinia sp. Ejp617] Length = 623 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 119/536 (22%), Positives = 239/536 (44%), Gaps = 43/536 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGD-YAAKVNGQEIGRAQLERAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G V+ + ++ L L+ L Q+ ++IGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + ++S + G +Y + K L+ ++G G ++ Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTG----TDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D + R V + +N + A + + + ++++++ + +PE R+S Sbjct: 175 VLGNETDSLAALVAQQRLVREVTINVNAMAAKQNVTQEEIANYYQQHQSSLMSPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ + S ++Q+ Y+++++ Y P+ + + EA +LKKG Sbjct: 235 YIKMDASAMQQPV--SESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALKKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E KS IS +G E PD L ++ +L +KG + VI S G Sbjct: 293 GSFAKLAKE--KSADPISARNGGDMGWLEPETTPD-ELKNA--ALKEKGQLSDVITSSVG 347 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405 +++A + + +P + EV +IA +++ EK + +L++ ++ S D ++ Sbjct: 348 FIVARLDDTQPEKVKALSEVHDEIARKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403 Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E++ + D+ +D +K K V + LL G++ + V D Sbjct: 404 SAEQVAGVKAVDTDWFDRDNLPAELKFKAVQDAIFNGALL----GENGAPGSNSEVITVD 459 Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 G +V +I+E P + L++V + K K ++ ++A++L+ E K GK Sbjct: 460 GDRAFVLRIREHKPEAVKALKDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514 >gi|152968976|ref|YP_001334085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893390|ref|YP_002918124.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella pneumoniae NTUH-K2044] gi|150953825|gb|ABR75855.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545706|dbj|BAH62057.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 624 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 133/645 (20%), Positives = 285/645 (44%), Gaps = 42/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 E + Q++G N ++ + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173 I ++ F + KF + F +A+ G+ +Y L+ ++ G M Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 P DQ + R V +N + A S+ + ++++ + + APE R+S Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + G ++ D S + L +KG + VI S G+++A Sbjct: 293 ADFATLAKEKSTDIISARNGG-DMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVA 351 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRREK 409 + +++P+ +V+ DIA +++ EK + Y L++ ++ S D ++ + Sbjct: 352 RLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLASAAQ 407 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467 + + + + G+D +E+ P + + + G++ + + DG +V + Sbjct: 408 VAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLR 467 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I E + L EV V K K ++ +A++L L K+GK + K G S Sbjct: 468 ISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKL-LAALKDGKGDEAM-KAAGLS 525 Query: 528 LLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKVG 582 ++R G D +SQ+ F+ P+ + + + + + V+ + K G Sbjct: 526 FGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAG 578 Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 P ++K + +TQ + +++++ L+ + + D++ Q+ Sbjct: 579 SMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|227358098|ref|ZP_03842440.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC 29906] gi|227161833|gb|EEI46865.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC 29906] Length = 625 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 130/539 (24%), Positives = 249/539 (46%), Gaps = 47/539 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR + KI L V+ + F++ G+ LFS SG + V K+ + ++ Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q + + +G S + G + ++ L+ L++ A LDQF +++G+ A ++ Sbjct: 60 QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + +V L I+ D + + + + + ++ ++ Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDA----DAFAEGIRQNLINQQLRYSIQGTDF 174 Query: 178 LLD-QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L+ + K F ++R+V L+ + S+ L ++++ + AP ++S Sbjct: 175 ALESEVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + + I IS+DE++A Y+ N ++ P + LV ++ A EA +LK G Sbjct: 235 YIQLEAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNG 294 Query: 294 KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 F+ L +E Q SL I++G + +P+++ A SL +KG + + Sbjct: 295 ADFVTLVKEKSIDTFSAKQNGSLGWITIG----QELPELANA----SLTEKGQISQPVKI 346 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE- 403 S GY I + ++KPS F ++K D+ +MR KA +D+ L++ ++ S D Sbjct: 347 SNGYAIFRLDDMKPSVVKPFDDIKADLLVKMRENKAI----DDFFALQQKVSQAASNDND 402 Query: 404 -ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---DD--PLSKDH-TV 456 ++ K ++ + D+ ++ V A E+L +FG DD P + V Sbjct: 403 TLATAAKAGNVTVINTDWFDEN----NVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMV 458 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 L + S V+++ PA + L++V V K K ++ ++++A +L L KEGK Sbjct: 459 TLGNDSAYIVRVEGYKPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKL-LAALKEGK 516 >gi|309787033|ref|ZP_07681645.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617] gi|308924611|gb|EFP70106.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617] Length = 611 Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 139/638 (21%), Positives = 277/638 (43%), Gaps = 56/638 (8%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI ++ V F++ G+S L G++ V Q++ F N++ E + Q++G Sbjct: 3 KIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQ 61 Query: 75 VNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 SE A + G L +++L+ L+ A LDQ+ ++ L +V I +P F D Sbjct: 62 Y-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDG 119 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFY 186 KF + + L + G+ D Y + L + G+ ++ +L D+ Sbjct: 120 KFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALV 175 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + R V ++ + A + + ++E+ K+N+ PE R+SYI D ++ + Sbjct: 176 AQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPV 235 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 S+ ++Q+ Y+++++++ P+ + + EA L KG F LA+E+ Sbjct: 236 --SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSAD 293 Query: 307 LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G ++ D ++ D + L +KG + VI S G++I + +I+P+ S Sbjct: 294 IISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSL 352 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAG 422 EV+ DIA ++R EK + Y L++ ++ S D ++ E+ + + Sbjct: 353 DEVRDDIAAKVR----HEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS 408 Query: 423 KDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLE 480 KD +E+ P + + + G++ + + DG +V +I E P + L Sbjct: 409 KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA 468 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 +V VK + K ++ A +L+++ K GK + + G ++R Sbjct: 469 DVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRS--- 523 Query: 541 NKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKVTNSKVG--PVQEK 587 G D ISQ F+ P P ++ SY V+ + K G P +K Sbjct: 524 ----GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 573 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 611 >gi|126726381|ref|ZP_01742222.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium HTCC2150] gi|126704244|gb|EBA03336.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium HTCC2150] Length = 653 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 102/472 (21%), Positives = 222/472 (47%), Gaps = 13/472 (2%) Query: 36 SVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 S GS+ +V SVG ++V + + + EL +SQ+ G + E+AR+ G+ +L L+ Sbjct: 65 SFGGSTQSVASVGDREVGVNEYARAVNNELSRLSQQFGQQITLEQARAFGVVDNVLQQLL 124 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 S A +D + +G V +I P F +F + RL G++ KE+ ++ Sbjct: 125 SQAAVDNEVVRLGFSIGDEEVRKQILEIPAFQSLGGQFDKVNYEERLRSSGLSTKEFENN 184 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 +RT + G GG+ ++ D F + R+ ++ +L+ + ++A L Sbjct: 185 LRIQTARTFLQGAVGGGVIGNSAYGDAVIDFLTQERNFEWALLDASALSEEVTATDADLQ 244 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++++ + PE ++I+Y + IE+ E+QA Y++ ++ PE R E+ Sbjct: 245 AYYDENPATFTLPESRQITYAVLLPETVAATIEVPASEIQAVYDERAAEFQKPERRLTER 304 Query: 275 LVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 L F ++ A+ A L G+ +F L E+ +L D+ +G +++ + + + A+++F+ Sbjct: 305 LAFADEAAANAAKARLDSGEVRFADLLAERDLTLEDVDMGEVTRDDLYEET-ANALFADG 363 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G P + S G I V+ + ++V++DI +++ ++A ++ + +++ Sbjct: 364 FLGIAGP-LPSSVGPAIFRVNGALAAIDTPLEDVQEDIRSELAQSRARREILDYITEVDD 422 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 LA G +++E++ ++ L D + +++AA Y E + +D + Sbjct: 423 LLAGGATLEEVAAETQMT---LETTDITTE--SAEDMAA--YNEFRAAALSAQDGDFPE- 474 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 L DG +++ P + +E V + + W +T +++ A++ Sbjct: 475 -ITELSDGGIFALRLDGITPPTLQDIEAVTDQLNEAWTYAETQIRLNTLADE 525 >gi|269138352|ref|YP_003295052.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella tarda EIB202] gi|267984012|gb|ACY83841.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella tarda EIB202] gi|304558384|gb|ADM41048.1| Peptidyl-prolyl cis-trans isomerase PpiD [Edwardsiella tarda FL6-60] Length = 626 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 174/393 (44%), Gaps = 24/393 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGD-YAAKVDGQEIGRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G V+ L K++L ++ LDQ+ + + L +V Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAQKLNLAISDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN F + ++ +AR G++ D Y +++ + V + G + Sbjct: 120 AIRAMPYFQ-TDNHFDNAKYLDMVARLGLSP----DAYAQLMRQQLVTQQLIQGFTATGF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L D + R V ++ + S+A L ++++++ ++ APE ++ Sbjct: 175 TLPAEVDALAALTMQQRQVSLATIDISKLMPQQQVSDAELQGYYQQHQSSFIAPEAVKVR 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D K+ +S+ E+ A Y+++K + P + + EA L G Sbjct: 235 YIEMDAAAINDKMTVSDAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAAQLANG 294 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F LA+E KS IS LG E PD A L+ KGD + I S G Sbjct: 295 ADFATLAKE--KSTDIISRKNGGELGWLEPETTPDEIRA---AKLSHKGDVSAPIASSVG 349 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 Y+I +++++P+ EV+ +IA++++ KA Sbjct: 350 YLIVRLNDMQPAVVKPLSEVRAEIADKVKQQKA 382 >gi|78356452|ref|YP_387901.1| peptidyl-prolyl cis-trans isomerse domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218857|gb|ABB38206.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 629 Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 94/406 (23%), Positives = 183/406 (45%), Gaps = 34/406 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ +++W KI ++ + F+ WG+ S+ V VG+ + ++F + Sbjct: 1 MLDSIRQNAQSWGVKIAFGLIIIVFVFWGVGS--MDNQPSNVVAKVGKTSITVNAFAREY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ ++ + V SE + GL ++L+ ++S L Q E GLE + IA Sbjct: 59 EQQVELVRAQFPDV-TSEDLKQAGLKMRVLNQMISEVLLVQQAEKQGLEVSPAELKLRIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRT--DVVGMFVGGMRPSNL 177 P+F+ D F + + LA +G Y D + ML++ D + M P+ + Sbjct: 118 EIPVFNDADGNFDGERYKQVLAAQGTTPGAYEDKIRRSMLAQKMRDFITM------PAAV 171 Query: 178 LLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++AK + E RS+DY++ + P ++ ++++ +NY+ P + Y Sbjct: 172 TAEEAKAMFLYSAERRSMDYVLFAAENYLDQVKPGEEQISAFYKQNIENYKVPPRVTLQY 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE------------IRTVEQLVFPNQKE 282 ++ +S+D + A YE NKE + E E+ V +K+ Sbjct: 232 VMITPAALADGASVSDDRIAAYYEDNKESFRQEERVHARHILVLADAGASEEKVAAAEKK 291 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDF 338 +E ++ ++KG F ++A+E + S LG F + + +P+ + A G Sbjct: 292 INELYERIRKGADFAKVAKEASEGPSAPLGGDLGWFGRGQMVPEF---EQAAFAAAAGQV 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 T + FG+ I V + + + EV +I++++ A EKV Sbjct: 349 TAPVRTQFGFHIIKVEEKENARIRTLDEVHDEISHRLAEEAALEKV 394 >gi|253990887|ref|YP_003042243.1| peptidyl-prolyl cis-trans isomerase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782337|emb|CAQ85501.1| Peptidyl-prolyl isomerase [Photorhabdus asymbiotica] Length = 623 Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 189/388 (48%), Gaps = 14/388 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI L ++ + F++ G+ L S S V Q + + ++ Sbjct: 1 MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTS-GTDSYAAEVNGQTISRAQLEQAF 59 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE M+ +++G F V + +S+ + ++L+ L++ A +DQ+ +++GL A +V Sbjct: 60 QQERNMLQEQLGDKFSVLASNEQSMKQIRSQVLERLINNALIDQYSQELGLSASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I R+ + + KF ++ ++ L R ++ + + L ++ F G + PS Sbjct: 120 AI-RNISYFQINGKFDNNKYLDFLNRSNLSPDILAEQTRQNLINQQLIMAFSGSEIVLPS 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L+ + + R+V L + V + ++ L ++ K+++ APE +ISYI Sbjct: 179 EVKLN--AELFLQQRAVRLATLELKKVHVRQEVTDKDLQDYYNVNKNSFIAPEEVKISYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D ++ K+ +++ ++ + YE N ++Y PE + + + EA L KG Sbjct: 237 RMDAADEMDKVSVTSVDVDSYYEHNLKRYTQPEQKKYSLVQLATEVEAKIVLDELNKGAD 296 Query: 296 FIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAH 352 F +LA E+ S + G ++ + SL + + +L +KG + VI G+ I H Sbjct: 297 FGKLAAEKSTDKFSAKNKGEIG--WMEEDSLPEEMKKANLKEKGQISSVIKVPNGFAIFH 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKA 380 + ++KP T EV+ +I ++ KA Sbjct: 355 LDDVKPQITKPLSEVRSEIEKTIKQEKA 382 >gi|242240288|ref|YP_002988469.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya dadantii Ech703] gi|242132345|gb|ACS86647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech703] Length = 626 Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 143/645 (22%), Positives = 278/645 (43%), Gaps = 50/645 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKVILALIVGSFVLTGVGDYLIRGSGD-YAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + + L K+ L L+ +DQF ++GL +V Sbjct: 60 QNERNRQQEMLGENFSALAANEGYMQQLRKQALSQLIDDTLIDQFARNLGLNISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ +++++ + G+ D Y ++L + V V G+ SN Sbjct: 120 AIFSVPAFQ-TNNRFDNEKYLAQVQQLGLTP----DVYAQLLRKQLVTQQLVRGLGGSNF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L D ++R++ ++ S+ + ++ + Y APE ++S Sbjct: 175 QLPQEIDNLVAIAAQDRTIRTATIDLDARAKTQTASDDEIQNFYNQNSSRYLAPEQFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI+ D KI + + + + YE++K ++ PE R + N+ +A + L KG Sbjct: 235 YIMLDAAAIMDKISVDSAAVSSYYEQHKSEFTQPERRKYSIIQLKNEADAKAVLEQLHKG 294 Query: 294 KKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ + S + G ++ S D I +L +KG + V+ S GY+I Sbjct: 295 ADFAALAKEKSTDIVSRRNGGDLG--WMDGNSTVDEIKQANLQQKGQLSDVVKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + +I+ S EV+ D+ ++++ KA ++ ++L E A + + EK Sbjct: 353 VRLDDIQVQRVRSLDEVRGDLGDKVKREKALDEFYAQQQKLSE--AASNDNESLVSAEKA 410 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF-GKDDPLSKDHTVALPDGSYMWV-QI 468 I D+ +D + K+ +L G++ + V DG +V +I Sbjct: 411 SGIKARQTDWFTRDNIPAALDFPQVKQAILNGTLTGENGAPGSNSDVINVDGDRAFVLRI 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 E P + L++V V + K K ++ A +++ + K+GKN L A+ Sbjct: 471 SEHKPEATQPLDKVRDQVVQAIKRQKAEQQARVDAEKILADL-KQGKN-----DTLTAAG 524 Query: 529 LTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKVT 577 L+ + M + + D +S+ VFS P P ++ +SY V+ + Sbjct: 525 LSFSAPRVMSSVGRG---DVMSEAVFSLP------HPQKDKVSYGIAQDQVGNIVIVALD 575 Query: 578 NSKVGPVQ--EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 N K ++ +K +F + + Q L DS+IA L + + + D Sbjct: 576 NVKARELEAAQKKQFAAQIEQSALATLFDSLIANLHDEAKIKLGD 620 >gi|91228613|ref|ZP_01262531.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01] gi|269965576|ref|ZP_06179690.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B] gi|91187845|gb|EAS74159.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01] gi|269829801|gb|EEZ84036.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B] Length = 619 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 122/532 (22%), Positives = 239/532 (44%), Gaps = 33/532 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + V GS+ + VG ++P F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGSNNSAAKVGNTEIPRGEFEMA 58 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + +F +++ + L R G + D + + + R V + ++ S Sbjct: 119 SMILDMPQFQS-NGQFDQEIYQASLRRAGFSP----DSFAEYMRRELVREQLLNALQNSE 173 Query: 177 LLLD---QAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L QA+ + + + R + I ++ + ++ + ++++ DN+ PE ++ Sbjct: 174 FILPGEVQAEGKLFTQTRDIRTIQIDLAEFAKNIELTDEEIQEYYKANPDNFTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290 SYI ++++ +S+ E++ Y+++ KY S E R V ++ E A L Sbjct: 234 SYIELSAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+E+ G + + LG ++ + D + ++ F+L GD + ++ F Sbjct: 294 NAGADFATLAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDTSGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I + +K S F+EV +I +M +A ++ E LE +A D + Sbjct: 353 GYHIIKLEELKDSVAKPFEEVAAEIKQEMVDQQAIDQFYELQNELER-VAFEYP-DSLYD 410 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + V+ ++ DF + V EV P Q + K+D L+ + P+ + V Sbjct: 411 ASQAVNQEVKTTDFISQ-VDAPEVLRSPAVMQAILSPEVKEDGLNSEAIEVAPE-HIIVV 468 Query: 467 QIKESIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 ++++ ARD LEEV V + VK +E Q+V KEGK Sbjct: 469 RVED---ARDETVLPLEEVKDQVVAELSRVKGEQEAMELGTQVVAAL-KEGK 516 >gi|295689570|ref|YP_003593263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis ATCC 21756] gi|295431473|gb|ADG10645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis ATCC 21756] Length = 653 Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 131/649 (20%), Positives = 273/649 (42%), Gaps = 38/649 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---I 57 ML R +++ A + +L V F I+G+SD +F S V+ G +++ F Sbjct: 1 MLAGFRSFAKSPFAVLLFGLLIVSFAIFGISD-VFKGPRGSGVIDAGSREMSAQDFKLRF 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++++E I ++ G + ++A G+DK+I+ L ++ I +G+ + Sbjct: 60 DNYRKE---IERRNGEPMTPDQAVERGVDKQIVQELALQESIAAAIAKMGVVPSDKLIAK 116 Query: 118 EIAR--SPLFHGK------DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 + S L G+ KF ++ + LA+ + + Y +++ Sbjct: 117 TVHEQMSSLPPGQRPFDPITGKFDSKLYAALLAQNNLTPQAYEASLRDEIAQAHFFSAVA 176 Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G++ + + E R V +N V A P++A L + ++ D PE Sbjct: 177 DGLKAPRIYAALQAAYGLEARDVAAFAVNPASVEKPAPPTDAQLMAFMKENADRLTRPET 236 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + +S + E + ++ E+Q ++ K+ PE R++ Q+V P+ K A Q Sbjct: 237 RVLSIMRVSAKALEPTVTLNPAEVQKAFDFRKDSLAKPETRSLIQIVAPDAKTAATISQR 296 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 L +G+ +A+ GK S ++L K +PD +AD+ FSLA G + I+G G Sbjct: 297 LARGEDPATVAKAYGK--SPVALIDKPKSALPDRKVADAAFSLA-VGQVSGPINGELGVS 353 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + V+ + P + V+ +I ++R A K + + ++ G + + + Sbjct: 354 VVKVTKVTPGVVATLDSVRPEIEAEVRAQTAQSKAYDQTQAYQDAHDAGADLVAAASKAG 413 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + + G D G+ A + +++ FG D + L G Y V+++ Sbjct: 414 AMVVTTAPITAQGADQMGQPAAGL--TPEMIKTAFGLPQGGESD-LIELGKGEYYAVKVE 470 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + +PA L E+ + W + + + +KA+ L K+G++ + + +++ Sbjct: 471 KVVPAAMPPLAEIKPQLTAVWMGQEMGKRLKAKADALAARV-KKGESLEAVAASAQSNVQ 529 Query: 530 TTNQINRMDNENKFFGYDGISQVFSG------PVEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++R + + G+ F G P E+ + G +YVV K+ P Sbjct: 530 RVPGLSRQNAQQHM----GLGPAFLGAAFDAKPNEVFTARAGQQGEAYVVAKLEAVHAAP 585 Query: 584 VQEKDKFISYLTQM-----MNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ + L Q + +DL ++ A K+Q + L ++ + Sbjct: 586 TNDVARY-AVLAQAQAANGLMRDLGEASRAAAKAQLKTKTNLTLARQAI 633 >gi|317492905|ref|ZP_07951329.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919027|gb|EFV40362.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 627 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 16/389 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ V F++ G+ L SG V Q++ + Sbjct: 1 MMDNLRAAANHVVLKIILGLIIVSFVLTGVGGYLTGGSGD-YAAKVDGQEISRGQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G V+ L K+ L+ L+ LDQ+ + +GL +V Sbjct: 60 QSERSRLQQQLGDQFSVLAGNEGYMKELRKQALNRLIDDMLLDQYAKKLGLGISDEQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F + ++S +A G+ Y + L+ ++ + + Sbjct: 120 AIWAMPYFQ-TNNQFDNAKYLSIIANMGLTPDNYAQLVRQQLTSQQLIQAYTATGFTLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R V ++ + + ++ L ++E+ K+++ APE ++SYI Sbjct: 179 EVEAMAALTMQQRDVRLATIDIKALEKDQKVTDEELKAYYEQNKNSFIAPEEVKVSYIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + K+ +S+DE+ A Y+++K Y PE + + + +A L G F Sbjct: 239 DAAAIQDKVTVSDDEIAAYYDQHKSSYTQPERKDYSVIQVKTEADAKAVLDELNSGADFA 298 Query: 298 QLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 ++A E KS IS LG PD L L KG + + S GY++ Sbjct: 299 KVAAE--KSTDIISRKKGGELGWLEPGTTPDEILG---AKLTTKGQLSGAVKSSVGYLVV 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++IKP EV+ DI Q++ KA Sbjct: 354 RLNDIKPEQVKPLAEVRADIEAQVKQQKA 382 >gi|296283875|ref|ZP_06861873.1| peptidyl-prolyl isomerase [Citromicrobium bathyomarinum JL354] Length = 646 Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 85/395 (21%), Positives = 179/395 (45%), Gaps = 11/395 (2%) Query: 17 FLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 FLV++ + F G S + +SG+++V VG + V + S + Q + Sbjct: 21 FLVLIAIAFAAGDVGNSGSFGGLSGTNSVAVVGDEDVTTAELRQSADNAFRQVQQDEPTL 80 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 +E GL ++LD L+ + +F + +G+ A + EI F G D FS Sbjct: 81 SMAEFVEDGGL-MQVLDTLLDRVAVSEFGKMLGVRAGENLINSEIRMISAFRGPDGSFST 139 Query: 135 DVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + L ++G+ ++ D + ++++ +V G P +++ A + + Sbjct: 140 EAYRAALQQQGLTDQIVRDDLSDGLIAQQVLVPAVFGAKFPDSIVARYATQLREKREGSI 199 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 +V P DP++ L ++ + ++ PE +++ Y LF + +E + E+ Sbjct: 200 ALVPAELFAPK-DDPTDKQLQTFYNANRTDFMRPERRQVRYALFGADQLADSVEPTAAEI 258 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + Y+ N + Y + E RT QL+ P ++ A+ + + G Q+AEE G L +G Sbjct: 259 KKRYDDNADLYRASEDRTFTQLIVPTRQAAESFRERVADGASLTQIAEEAG--LETQQIG 316 Query: 314 SFSKE---YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +E + ++A+++FS A +G+ P+ GY + + ++K + + + + Sbjct: 317 PIKREDYAQQANAAVAEAVFS-ADRGEIAPIARSPLGYHVVRIDDVKTIPARTLAQARDE 375 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 IA+ +R K + E ++ + G S +I+ Sbjct: 376 IADALRADKQRRALTELASDIDARVTSGESFADIA 410 >gi|332098560|gb|EGJ03526.1| PPIC-type PPIASE domain protein [Shigella boydii 3594-74] Length = 611 Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 138/638 (21%), Positives = 277/638 (43%), Gaps = 56/638 (8%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI ++ V F++ G+S L G++ V Q++ F N++ E + Q++G Sbjct: 3 KIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQ 61 Query: 75 VNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 SE A + G L +++L+ L+ A LDQ+ ++ L +V I +P F D Sbjct: 62 Y-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDG 119 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFY 186 KF + + L + G+ D Y + L + G+ ++ +L D+ Sbjct: 120 KFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALV 175 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + R V ++ + A + + ++E+ K+N+ PE R+SYI D ++ + Sbjct: 176 AQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPV 235 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 S+ ++Q+ Y+++++++ P+ + + EA L KG F LA+E+ Sbjct: 236 --SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSAD 293 Query: 307 LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G ++ D ++ D + L +KG + VI S G++I + +I+P+ S Sbjct: 294 IISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSL 352 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAG 422 EV+ DIA +++ EK + Y L++ ++ S D ++ E+ + + Sbjct: 353 DEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFS 408 Query: 423 KDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLE 480 KD +E+ P + + + G++ + + DG +V +I E P + L Sbjct: 409 KDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLA 468 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 +V VK + K ++ A +L+++ K GK + + G ++R Sbjct: 469 DVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRS--- 523 Query: 541 NKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFKVTNSKVG--PVQEK 587 G D ISQ F+ P P ++ SY V+ + K G P +K Sbjct: 524 ----GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 573 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 611 >gi|330829914|ref|YP_004392866.1| peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565] gi|328805050|gb|AEB50249.1| Peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565] Length = 637 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 127/598 (21%), Positives = 258/598 (43%), Gaps = 43/598 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ VAK+ L ++ + F + G+ L + + +V ++ ++ N++ Sbjct: 2 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYL-NGPARTAPATVNGTEISAAALENAY 60 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + ++G N + + + +LD L+ A LD ++GL ++ Sbjct: 61 RNERARMESQMGEAFSQLAANPDYMKQ--FRRGVLDRLIDQALLDSKARELGLRISDEQI 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P F ++ KF++D ++ + R G+ + + D + + R ++ +G Sbjct: 119 KQAIVAMPEF-AENGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMSALLGTEFSL 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +Q + Y + R + + L + A S+ L Q+++ + E ++ Y+ Sbjct: 178 KGEAEQLDKLYNQTRDLRLVRLAAANYMADVQVSDNELEQYYKTNGARFMNDEQVKVDYL 237 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQ 288 L D K I+++ + Q Y+++++ + E R V ++ P +++A+ Sbjct: 238 LLDAANLAKDIKVTEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLA 297 Query: 289 SLKKGKKFIQLAE-EQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 K G F LA+ + + S G ++ + D + + F+L K GD + V+ Sbjct: 298 KAKAGDDFAALAKADSSDTFSAKKGGELDWFEKGVMDPAFEKAAFALNKAGDLSTVVKSP 357 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-----EEFLALGTS 400 FG+ I + ++ + T F +VK++ +++ KA EK + +++ E +L + Sbjct: 358 FGFHIIKLLGVEAAQTKPFADVKEETITRLQADKAKEKFFAEQQKMADSSFENPDSLDLT 417 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 D + K+ S D A + +V ++ + EQL +DD + D + L D Sbjct: 418 ADAMGM--KVQSSDFFTQATAPAPLNDPKVLSVAFSEQL------RDDNTNSD-VIELAD 468 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G + + I P + L EV V K K +E KA Q +L+ K G++ Sbjct: 469 GKALVLHITGHKPKAVKPLAEVKEQVIAAIKHDKASEVARGKA-QGLLDKLKVGESITAD 527 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 LG + T + R D E + I+Q F+ P PI+ S + TN Sbjct: 528 LTALGLKVETHKGVARFDRE---LDQNLIAQAFTLP------HPIDGKPSVALVAETN 576 >gi|325498268|gb|EGC96127.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia fergusonii ECD227] Length = 611 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 179/380 (47%), Gaps = 28/380 (7%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI ++ V F++ G+S L G++ V Q++ F N++ E + Q++G Sbjct: 3 KIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFNSERNRMQQQLGDQ 61 Query: 75 VNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 SE A + G L +++L+ L+ A LDQ+ D+ L +V I +P F D Sbjct: 62 Y-SELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQAIFATPAFQ-VDG 119 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFY 186 KF + + + L + G++ D Y + L + G+ ++ +L D+ Sbjct: 120 KFDNSRYNAILNQMGMS----ADQYAQALRNQLTTQQLINGIAGTDFMLKGETDELAALV 175 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + R V ++ S+A +T +++++K+N+ PE R+SYI+ D ++ Sbjct: 176 SQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLDAANIQQP- 234 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +S+ ++QA Y+++++++ P+ + + EA +L G F +LA+E KS Sbjct: 235 -VSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAKE--KS 291 Query: 307 LSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 IS LG P L D+ L KG + VI S G+++ + +++P+ Sbjct: 292 ADIISARNGGDLGWLEDSTTPQ-ELKDA--GLKDKGQLSGVIKSSVGFLVVRLDDVQPAK 348 Query: 361 TVSFQEVKKDIANQMRITKA 380 + EV+ DIA +++ KA Sbjct: 349 VKTLAEVRDDIAAKVKHEKA 368 >gi|148260238|ref|YP_001234365.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5] gi|146401919|gb|ABQ30446.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5] Length = 628 Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 129/638 (20%), Positives = 251/638 (39%), Gaps = 26/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +IR+ W+ + F VVL F+ WG+S + + S + +VG Q + + ++ Sbjct: 1 MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI-----GLEADHGRV 115 ++ L + + NS R S G ++++ + G +D+ ++ G+ A + Sbjct: 61 QRTLNAYATQ-----NSGREPSKG-ERRLFADQALGTAIDRAAMELEARRMGVVAPPAAI 114 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 ++ P FHG D KF F + LA + ++ L + ++ G+ Sbjct: 115 RQQVFAIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAP 174 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+DQ + + R+V + L P+ VL +++ + + P + + Sbjct: 175 APLVDQIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVV 234 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + +S E+ A+Y++ K K+ RTVE + + K A + K G Sbjct: 235 VLSPALIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKSAAALANAWKGGAD 294 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + + + + + + +K + A G+ + + G+ G + V+ Sbjct: 295 WAAMQKAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTK 354 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 V I ++++ KA V L++ LA T++ ++ + + Sbjct: 355 AVAGGDKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV 414 Query: 416 PLVDFAGKDVKGKEVAAIPYK---EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 VD G V GK A IP Q + + P + V+ P SY + + I Sbjct: 415 S-VDREGMTVDGKP-AGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRII 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 + ++V DV DW + + A +L L K GK G ++ T+ Sbjct: 473 KPALKPYDKVKADVLADWTGAQVERQEEVAAAKL-LTAVKGGKTLAAAASAAGLTVTTSA 531 Query: 533 QINRMDNENKFFGYDGISQV-FS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-K 587 + R ++QV FS G MV+ E + VV + K G + Sbjct: 532 PMTRAKPAKGV--PPQLAQVAFSLKKGAPTMVQTQ--EGFVVGVVSDIAEPKPGSDKAFH 587 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + L Q M +D+L + A L+ + V ++ L+ + Sbjct: 588 QRVADSLGQSMQEDVLQTYAAALRQRDHVKINTKLLNQ 625 >gi|294141764|ref|YP_003557742.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12] gi|293328233|dbj|BAJ02964.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12] Length = 621 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/393 (22%), Positives = 184/393 (46%), Gaps = 24/393 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V + + S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEDISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A L K +L+ LV+ LDQ ++GL ++ Sbjct: 60 QSERARLEQQMGDMFQALAANDTYLASVKKSVLERLVAEKLLDQSATELGLRVSDEQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F +D +++ L + G + + ++R +V VG S Sbjct: 120 AIMIEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVG----SEF 174 Query: 178 LLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L + + R + Y +++ A A ++ +++ + +PE + Sbjct: 175 VLPGETSYLAGIQGQTRDIRYHIVDASPFVADAKVTDEQAQSFYDANLSQFMSPETLSLE 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEA 286 YI +V + + +++ E Q Y++NK++Y PE R ++ ++ +A+ Sbjct: 235 YIELNVADMANDVSVTDAEAQTYYDENKQQYLKPEKRLAAHILINLGDDESVSKAKAEAI 294 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + L+ G F +LA+ + + LG + ++ + D + + ++SL+ KG ++ V+ Sbjct: 295 YAKLQAGDDFSELAKTESEDTFSGELGGKLDWFEQGVMDPAFDEVLYSLS-KGSYSTVVK 353 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 SFGY I + +++P F +VK +I +++ Sbjct: 354 TSFGYHIIKLLDVQPGVEAPFADVKDNIIAELK 386 >gi|312882503|ref|ZP_07742244.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369903|gb|EFP97414.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC BAA-2122] Length = 619 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 122/553 (22%), Positives = 236/553 (42%), Gaps = 35/553 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + K+ L V+ + F+ G+S + S SS+ VG ++ F + Sbjct: 1 MMERMREGASGVAVKVILGVIILSFVFTGVSGYIGS-GASSSAAKVGNDEISRGDFEREY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + ++G + N +++ K +LD ++ +++ E +GL +V Sbjct: 60 QNQRNQMQAQLGDYFSNLLADQNYVNTFRKSVLDRMIDDKLIERHAESLGLRVSDAQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I P F + KF DV+ + L R G + + K + R + G Sbjct: 120 QIFEFPQFQ-VEGKFDEDVYQATLRRAGFTAHTFSEDLRKNILREQLRNAIEGTDFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V I L+ S+ + +++++ Y PE +++YI Sbjct: 179 EVESQSKLISQTRDVKKITLSLSDFAKKVKLSDEEINDYYQQHTSQYTRPEQMKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I +S+++ +A Y+ N +KY S E R V ++ N+++A + L G Sbjct: 239 SAEKLKNNIVVSDNDAKAYYQDNIDKYTSEEQRRVSHILIQGDNKEKAQKVLDKLNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E G + SLG ++ + D + F+L + G+ T ++ FGY I Sbjct: 299 FATLAKEDSEDVGSAEEGGSLGWIERD-VMDPEFEKAAFALKQPGETTGLVKSEFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM--------DE 403 + +K T S++ V+K I +++ D K +EF AL + D Sbjct: 358 KLDELKAPETESYETVEKAIKQELK----------DQKAADEFYALQAQLETQAYESPDS 407 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + + ++ DF D ++ Q L K+D L+ + P+ Sbjct: 408 LDAAAEAIKANIQTTDFIS-DANAPDLLKSAPVLQALANPEVKEDGLNSEVIEIAPE-HV 465 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + V+I ++ P + L EV DV + VK A+E + K ++E K GK D+ K Sbjct: 466 LVVRINDTRPEKLLPLSEVRDDVVEAATEVK-AKESAEKLAISIVEELKSGK--EDLLKK 522 Query: 524 LGASLLTTNQINR 536 G ++R Sbjct: 523 YGLQFGEAESLDR 535 >gi|148977892|ref|ZP_01814445.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3] gi|145962838|gb|EDK28110.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3] Length = 621 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/507 (20%), Positives = 217/507 (42%), Gaps = 16/507 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIGRGEFEQAY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ + L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQAALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + Q++ + Y PE ++SYI Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKDVELTDEQIEQYYTENPLAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ E A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTAEQRKVSHILVEGDDEAKAQSILDELNAGTD 298 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LAEE+ +G + + + D + D+ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALQNVGDTTGLVKSDFGYHIIK 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIV 411 + +K + + EV +I ++ A ++ E LE+ S+D+ + + + Sbjct: 359 LDELKAPESQPYAEVAAEIKQELLDQHAVDQFYEMQTELEKVAFEFPDSLDDSA---EAI 415 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + + DF + EV P Q + K+D L+ + P+ + V+++E+ Sbjct: 416 NAKITTTDFISQ-ADAPEVLMTPAVMQAILSPEVKEDGLNSELIEVAPE-HVIVVRVEET 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEE 498 LEEV V VK E+ Sbjct: 474 RDETVLPLEEVKDQVVAALSAVKAEEQ 500 >gi|206578972|ref|YP_002240079.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342] gi|206568030|gb|ACI09806.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342] Length = 624 Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 134/646 (20%), Positives = 285/646 (44%), Gaps = 44/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 E + Q++G N ++ + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173 I ++ F + KF + F +A+ G+ +Y L+ ++ G M Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 P DQ + R V +N + A S+ + ++++ + + APE R+S Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNTLAAKQTASDEEINAFWQQNQARFMAPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292 Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ + G + +E L D+ L +KG + VI S G+++ Sbjct: 293 ADFATLAKEKSTDIISARNGGDMGWMEEASTVPELKDA--GLKEKGQLSGVIKSSVGFLV 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 A + +++P+ +V+ DIA +++ EK + Y L++ ++ S D ++ Sbjct: 351 ARLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAA 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 ++ + + + G+D +E+ P + + + G++ + + DG +V Sbjct: 407 QVAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E + L EV V K K ++ A++L L K+GK + K G Sbjct: 467 RISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKL-LAALKDGKGDEAM-KAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKV 581 S ++R G D +SQ+ F+ P+ + + + + + V+ + K Sbjct: 525 SFGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKA 577 Query: 582 G--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 G P ++K + +TQ + +++++ L+ + + D++ Q+ Sbjct: 578 GNMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|332305578|ref|YP_004433429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172907|gb|AEE22161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 627 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 125/608 (20%), Positives = 260/608 (42%), Gaps = 61/608 (10%) Query: 1 MLEIIRKASR-TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE IR+ ++ TW I +V+ + F+ G+ + S S + V + + + + Sbjct: 1 MLERIREGTQGTWAMAILGLVI-LSFVFAGVGSYINS-SADTAAAKVNDETISQADLERA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E G + + G + A S L + +LD L+ ++Q D+GL ++ Sbjct: 59 YQNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLIEQAAVDLGLRVSDAQIK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D KF ++ + + L + G E+ D+ ++R + +G Sbjct: 119 QAIVAMPEFQF-DGKFDNERYSAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLL 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 QA + + R Y+ + S + + +++ + + ++Y+ Sbjct: 178 EETTQAYKLQQQTRDARYLTVPADMFKGDVTVSQSDVENYYQANITQFDTQQQVSLAYVE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQS 289 V + IE+S DE + YE+N + + + E R ++ +++A++ Sbjct: 238 LSVDDLLAGIEVSEDEAEQYYEQNIQDFRTQEERRASHILIEFGDDQQKAEQQAEDILAK 297 Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + G+ F +LAE E G L S+G + D + D+ F+L GD + Sbjct: 298 INNGEDFAELAETFSSDTFSAENGGDLDWFSMG------MMDPAFEDAAFALQNVGDVSD 351 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT- 399 V+ FG+ I ++++KP T F +VK+D+ +++ +A E+ R+ E +A T Sbjct: 352 VVESEFGFHIIKLTDVKPEETSPFADVKEDVIAKLKAERAEEEFYAKQLRMAE-VAFETP 410 Query: 400 -SMDEISRREKIVSIDLPLV-----DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++DE++ I +D+ D A + V V + + ++L+ +D ++ D Sbjct: 411 DTLDEVA---AIAEVDVKTTVMFSQDSAPQAVNYPNVVSQAFSDELI------NDQVNSD 461 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + L D M++++ + R + L+EV ++ D + A++ + + + VL + Sbjct: 462 -VIELEDNHVMFIRVADYEAQRTKSLDEVSVEI-NDILLAEQAQQAAKEWAETVLSDIQS 519 Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENK-------FFGYDG------ISQVFSGPVEMV 560 +N D + G N + R ++ F DG + ++F+G V +V Sbjct: 520 QQNVSDKLQTKGIEWQEQNAVTRNASQVSPAVVTALFKLTDGEESNGQVVELFNGDVALV 579 Query: 561 KCFPIENG 568 + + G Sbjct: 580 QLLEVNEG 587 >gi|294635328|ref|ZP_06713825.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC 23685] gi|291091304|gb|EFE23865.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC 23685] Length = 626 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/394 (22%), Positives = 174/394 (44%), Gaps = 26/394 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGD-YAAKVDGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G V+ L +++L ++ LDQ+ + + L +V Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRQQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN F + ++ +AR G+ D Y +++ + V + G + Sbjct: 120 AIRTLPYFQ-TDNHFDNAKYLEMVARLGLTP----DSYAQLMRQQLVTQQLIQGFTATGF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + R ++ ++ + + S+A L +++++++++ APE R+S Sbjct: 175 TLPSEVSSLAALTMQQRLINLATIDIKQLMPQQKVSDAELQGYYQQHQNSFIAPEAVRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D K+ +S+ E+ A Y+++K + PE + ++ EA + L KG Sbjct: 235 YIEMDAAAINDKMTVSDAEISAYYDQHKRSFTQPERNKYSVIQVKSEAEAKAIAEQLAKG 294 Query: 294 KKFIQLAEEQGKSLSDI-------SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F LA+E SDI LG E P L L KG + I S Sbjct: 295 ADFATLAKEHS---SDIISRKNGGELGWMEPESTPQEILN---AKLTTKGQVSAPIASSV 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 GY+I + +++P+ EV+ IA++++ K+ Sbjct: 349 GYLIVRLDDMQPAVIKPLSEVRAAIADKVKQQKS 382 >gi|288936830|ref|YP_003440889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] gi|288891539|gb|ADC59857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] Length = 624 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 134/646 (20%), Positives = 285/646 (44%), Gaps = 44/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 E + Q++G N ++ + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173 I ++ F + KF + F +A+ G+ +Y L+ ++ G M Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 P DQ + R V +N + A S+ + ++++ + + APE R+S Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292 Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ + G + +E L D+ L +KG + VI S G+++ Sbjct: 293 ADFATLAKEKSTDIISARNGGDMGWMEEASTVPELKDA--GLKEKGQLSGVIKSSVGFLV 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 A + +++P+ +V+ DIA +++ EK + Y L++ ++ S D ++ Sbjct: 351 ARLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAA 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 ++ + + + G+D +E+ P + + + G++ + + DG +V Sbjct: 407 QVAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E + L EV V K K ++ A++L L K+GK + K G Sbjct: 467 RISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKL-LAALKDGKGDEAM-KAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKV 581 S ++R G D +SQ+ F+ P+ + + + + + V+ + K Sbjct: 525 SFGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKA 577 Query: 582 G--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 G P ++K + +TQ + +++++ L+ + + D++ Q+ Sbjct: 578 GNMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|262394811|ref|YP_003286665.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25] gi|262338405|gb|ACY52200.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25] Length = 619 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 121/532 (22%), Positives = 240/532 (45%), Gaps = 33/532 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + VSG++ + VG ++P F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVSGNNNSAAKVGNTEIPRGEFEMA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + A ++ K +LD +++ LDQ E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + +F +++ + L R G + D + + + R V + ++ S Sbjct: 119 SMILDMPQFQS-NGQFDQEIYQASLRRAGFSP----DSFAEYMRRELVREQLLNALQNSE 173 Query: 177 LLLD---QAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L QA+ + + + R + I ++ + ++ + Q+++ DN+ PE ++ Sbjct: 174 FILPGEVQAEGKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290 +YI ++++ +S+ E++ Y+++ KY S E R V ++ E A L Sbjct: 234 AYIELSAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+E+ G + + LG ++ + D + ++ F+L GD + ++ F Sbjct: 294 NAGADFATLAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDTSGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I + +K S F+EV +I +M +A ++ E LE +A D + Sbjct: 353 GYHIIKLEELKDSVAKPFEEVAAEIKQEMVDQQAVDQFYELQSELER-VAFEYP-DSLYD 410 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + V+ ++ DF + V EV P Q + K+D L+ + P+ + V Sbjct: 411 ASQAVNQEVKTTDFISQ-VDAPEVLRNPAVMQAILSPEVKEDGLNSEAIEVAPE-HIIVV 468 Query: 467 QIKESIPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 ++++ ARD LEEV V + VK ++ Q+V KEGK Sbjct: 469 RVED---ARDETVLPLEEVKDQVIAELSRVKGEQDAMELGTQVVAAL-KEGK 516 >gi|261341042|ref|ZP_05968900.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus ATCC 35316] gi|288316907|gb|EFC55845.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus ATCC 35316] Length = 624 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 185/394 (46%), Gaps = 28/394 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L ++ L+ L+ A LDQ+ +++GL +V Sbjct: 60 AGERNRMQQQLGDQF-SELAANEGYMNNLRQQTLNRLIDEALLDQYAKNLGLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + F + KF + + S + + G+ +Y L+ ++ VG ++ Sbjct: 119 KAIFSTQAFQ-SNGKFDNTRYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVG----TD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A S+A + W+E+ K+++ APE R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D + S+ ++Q+ Y+++++++ P+ + + +A L K Sbjct: 234 SYIKLDAAALQGN--ASDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA + KS IS +G PD L ++ L KG + VI S Sbjct: 292 GADFATLA--KAKSTDIISAKNGGDMGWLEAATTPD-ELKNA--GLKDKGQLSGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 G+++A + +++ + T EV+ +IA +++ KA Sbjct: 347 GFLVARLDDVQAAKTKPLAEVRDEIAAKVKQEKA 380 >gi|167624682|ref|YP_001674976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella halifaxensis HAW-EB4] gi|167354704|gb|ABZ77317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella halifaxensis HAW-EB4] Length = 621 Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 105/424 (24%), Positives = 196/424 (46%), Gaps = 50/424 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR+ S+ +AK LV++ + F G+S L GSST V +V +++ S+ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL----GSSTEVAAATVNGEEISNSALE 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G ++++ + + +L+ LV+ LDQ ++GL + Sbjct: 57 QAYQNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAETLLDQNAAELGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F D +F +D + + L + G + D ++R +V VG Sbjct: 117 IKAAIMTEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVATLVG---- 171 Query: 175 SNLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPS--NAVLTQWFEKYKDNYRAPE 228 S +L ++ + R +DY V++ P +AD S + + +++ D + PE Sbjct: 172 SEFVLPGEAKYLADLQGQTRDIDYKVID--ATPFLADISVTDEQIKTYYDSNLDQFIRPE 229 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-- 286 + YI D + K +++++ + QA Y+++K Y E R ++ + A Sbjct: 230 VVSLDYIELDAKDLAKDVKVTDADAQAYYDEHKANYTQAEKRLAAHILVQAGDDDAAAKA 289 Query: 287 -----FQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 ++ L+ G F +LA+ EQG L G E+ D +L F+L Sbjct: 290 KAEAIYKQLQDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEF--DTAL----FAL 343 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 KGD++ V+ +FGY I + +I+ F +VK+ I Q++ +A +K E L+ Sbjct: 344 -NKGDYSNVVKTNFGYHIIKLLDIQAGAEAPFADVKEKIIAQLQEKQAVDKFYE----LQ 398 Query: 393 EFLA 396 + LA Sbjct: 399 QVLA 402 >gi|37527725|ref|NP_931070.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787161|emb|CAE16237.1| Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 623 Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 92/391 (23%), Positives = 181/391 (46%), Gaps = 20/391 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI L ++ + F++ G+ L S +GS V Q + + ++ Sbjct: 1 MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGAGS-YAAEVNGQAISRAQLEQAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE + +++G V+ S+ + + LD L++ A +DQ+ ++GL A +V Sbjct: 60 QQERNALQEQLGDKFSVLASDEQSMKQIRNQALDRLINNALIDQYSRELGLSASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I + F D KF ++ ++ L R ++ + + + L ++ F G P Sbjct: 120 SIRNTSYFQ-TDGKFDNNKYLELLNRFNMSPDIFAEQTRQNLVNQQLIMAFSGSEIALPG 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L+ + R+ L + + A + ++ L ++ K ++ A E +ISYI Sbjct: 179 EVKLN--AELLLQQRTARIATLELKKIQAQQEVTDKDLQDYYNLNKSSFIASEEVKISYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D ++ K+ ++ ++ A YE N ++Y PE + + + EA F L KG Sbjct: 237 KMDAVDEMNKVSATSADVDAYYEHNLKRYTQPEQKKYSLIQLATESEARTVFDELNKGAD 296 Query: 296 FIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F +LA + KS S +G ++ +P+ L + +L +KG + VI G+ Sbjct: 297 FGKLATK--KSTDKFSAKNHGEIGWMEEDALPE-ELKQA--NLKEKGQISSVIKVPNGFA 351 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 I H+ ++KP EV+ +I ++ KA Sbjct: 352 IFHLDDVKPQIIKPLSEVRSEIEKMVKQEKA 382 >gi|290474659|ref|YP_003467539.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Xenorhabdus bovienii SS-2004] gi|289173972|emb|CBJ80759.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Xenorhabdus bovienii SS-2004] Length = 623 Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 30/408 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G++ L S G + V Q + + ++ Sbjct: 1 MMDNLRTAANGPVLKIVLALIILTFVLTGVTGYL-SSEGGNYAAKVNGQTISRAQLEQAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q+ + ++G + S+ + + + LD L++ DQ+ +GL A +V Sbjct: 60 QQDKIALQDRLGDQFSTLLSDEQKVQQIRRSSLDRLITVILSDQYARKLGLSASDEQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI P F D KF ++ +++ L + + + + L ++ + G Sbjct: 120 EIRNLPFFQ-TDGKFDNNKYLTLLTGANRSPDNFAEQVRQDLINRQLMSILTGSEIALPT 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + Q F+ R+V + L + + A ++ L +++ +++ PE ++SYI Sbjct: 179 EIKQETALAFQERTVRFATLELKSIEAQQKVTDKELKNYYDVNSNSFTVPEKVKVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ K + +S+ +++ Y+ N +Y E + + + EA LKKG F Sbjct: 239 DAADELKSVTVSDADIEKYYKNNLPQYMQVEQKKYSMVQLVSDAEAKSVLDELKKGADFS 298 Query: 298 QLAEEQGKSLSDISLGSFSKE------YIPDVSLADSIFS--LAKKGDFTPVIHGSFGYV 349 +LA E+ S FS + ++ + SL D I S L +KG + VI S GY Sbjct: 299 KLAAEK-------STDKFSAQKGGDLGWMEESSLPDEIKSAKLIEKGQLSGVIKLSGGYA 351 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 I + +IKP S EV+ +I EK+ + K ++ F AL Sbjct: 352 IFRLDDIKPQIIKSLVEVRSEI----------EKIVKQEKAVDAFYAL 389 >gi|290510114|ref|ZP_06549484.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55] gi|289776830|gb|EFD84828.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55] Length = 624 Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 134/646 (20%), Positives = 285/646 (44%), Gaps = 44/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 E + Q++G N ++ + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173 I ++ F + KF + F +A+ G+ +Y L+ ++ G M Sbjct: 118 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 176 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 P DQ + R V +N + A S+ + ++++ + + APE R+S Sbjct: 177 PGES--DQLAALVSQQRVVREATINVNALAAKQTVSDEEINAFWQQNQARFMAPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG Sbjct: 235 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 292 Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ + G + +E L D+ L +KG + VI S G+++ Sbjct: 293 ADFATLAKEKSTDIISARNGGDMGWMEEASTVPELKDA--GLNEKGQLSGVIKSSVGFLV 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 A + +++P+ +V+ DIA +++ EK + Y L++ ++ S D ++ Sbjct: 351 ARLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAA 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 ++ + + + G+D +E+ P + + + G++ + + DG +V Sbjct: 407 QVAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +I E + L EV V K K ++ A++L L K+GK + K G Sbjct: 467 RISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKL-LAALKDGKGDEAM-KAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKV 581 S ++R G D +SQ+ F+ P+ + + + + + V+ + K Sbjct: 525 SFGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKA 577 Query: 582 G--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 G P ++K + +TQ + +++++ L+ + + D++ Q+ Sbjct: 578 GNMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|127513432|ref|YP_001094629.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica PV-4] gi|126638727|gb|ABO24370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica PV-4] Length = 621 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 137/653 (20%), Positives = 280/653 (42%), Gaps = 75/653 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKGILVLVILSFAFTGVSSYLGS-SSEPSAATVNGEEISKSALEQAY 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + S + + + +L+ L++ +DQ D+GL ++ Sbjct: 60 QSERARLEQQLGDMYDTLASNESYLASVKQNVLERLIADKLVDQAAADLGLTVSDQQIKT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D +++ + + G + D ++R +V VG S Sbjct: 120 AIMNEPAFQ-TDGKFDNDRYLALIRQLGYQANSFRDMMRGDMTRRQLVVTVVG----SEF 174 Query: 178 LLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L + + R + Y V++ + A S+ ++++ + + PE + Sbjct: 175 VLPGEAEYLAKIQGQTRDIRYHVVDAEPMLATVSVSDEEANTYYQQNQSLFVRPETISLD 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------- 278 YI ++ I++S++E + Y++NK +Y PE R ++ Sbjct: 235 YIELSANQLASAIQVSDEEAKTYYDENKAQYLQPEKRLAAHILVSLGDDEDAAKAKAEAI 294 Query: 279 -NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + +A E F++L K + EQG L G + + ++F+L +KG Sbjct: 295 MTKLKAGEDFEALAKSDSDDSFSGEQGGKLDWFEQG------VMEAPFDQALFAL-EKGQ 347 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LA 396 ++ ++ SFGY I + +++ + T F+ VK I Q++ KA + +RL + Sbjct: 348 YSDIVKTSFGYHIIKLLDLQAASTSPFEAVKDKIVAQIQQDKAVNEFYTLQQRLSDVSYE 407 Query: 397 LGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 + ++ E ++ + P+ D A + + +V + +L D ++ D Sbjct: 408 VPDTLAEAAKEVGVAVKTSPVFTRDNAPEPLNSADVLKAAFSNTVLL------DGMNSD- 460 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L D + V++ + A + +V + + K K E KA +++ Sbjct: 461 VIELGDNHVVVVRVNKHAAAGTMEFADVKATIVERLKQDKANELARDKAQEMMAAIK--- 517 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVF--SGPVE--MVKCFPIENG 568 G + A ++T Q++R + G D +S+ F + P E +V + NG Sbjct: 518 ------GGEIPAEMITRTQLSRGEQ-----GIDTSIVSKAFEMAQPAEQFVVDTAALANG 566 Query: 569 LSYVVFKVTNSKVGPVQEKDK-FISYLTQMMNKDLLD----SVIAYLKSQYSV 616 + V+ KV + D+ ++ L Q +N + ++IA LK+Q V Sbjct: 567 YAVVIL----DKVNQAESVDESLVTALKQRLNSQYSENDYRALIAALKAQAEV 615 >gi|261822503|ref|YP_003260609.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium wasabiae WPP163] gi|261606516|gb|ACX89002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium wasabiae WPP163] Length = 627 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 139/656 (21%), Positives = 278/656 (42%), Gaps = 64/656 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGD-YAAKVNGQEITRGQLEQAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ S L K+ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQEALGENFSILASNDGYMQQLRKQALSQLIDETLLDQYANKLGLNISDEQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F ++ ++ ++ R G+ D Y +ML + + G + Sbjct: 120 AIFDVPAFQ-TNKHFDNEKYLDQVRRLGVTP----DMYAQMLRKQLTSQQLIRGFGNTAF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 LL D + ++R V ++ ++ + ++++ K + APE ++S Sbjct: 175 LLPQEIDNLVKLAAQDRVVRVATIDVAAKAKALTVADDEVQSYYDQNKGRFIAPEEFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++I + + YE+NK Y PE + + N+ +A +LK+G Sbjct: 235 YITLDAASIMDNVKIDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQG 294 Query: 294 KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ +S + G ++ + S D + LA+KG + I S GY+I Sbjct: 295 GDFATLAKEKSTDIISRRNGGDLG--WMDENSTIDELKQAKLAEKGQVSSAIKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRRE 408 + +++P +V+ +IA +++ EK ++ + L++ ++ S D ++ E Sbjct: 353 VRLDDVQPQQVKPLSDVRAEIAEKVK----HEKAQDGFYALQQKVSEAASNDNESLASAE 408 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR--VFGKDDPLSKDHTVALPDGSYM 464 + I D+ ++ + AA+ +K Q +F + G++ + V DG Sbjct: 409 EAAGIKATQTDWFTRE---QVPAALNFKPVTQSIFNGALLGENGAAGNNSDVINVDGDRA 465 Query: 465 WV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 +V +I E P R L++V T++ + K K ++ A +++ E K+GK+ D K Sbjct: 466 FVLRITEYRPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD--DALKA 522 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 G S ++ + G +F+ P P ++ SY +T + G Sbjct: 523 AGLSFGQAKTLSSISQ-----GDATAEAIFAMP------HPEKDKPSYT---ITQDQAGN 568 Query: 584 V---------------QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + ++K +F S + Q L DS+++ L+S+ + + + Q Sbjct: 569 IVLAALDSVTPHQLNDEQKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAAQ 624 >gi|163751873|ref|ZP_02159087.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99] gi|161328223|gb|EDP99387.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99] Length = 621 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 92/397 (23%), Positives = 181/397 (45%), Gaps = 32/397 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+AS+ +AK LV++ F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREASQGVIAKSILVLVIFSFAFSGVSSYLGS-STEAAAATVNGEEISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A L + +L+ LV+ LDQ ++GL ++ Sbjct: 60 QSERARLEQQLGEMFQALAADDTYLASVKQSVLERLVAEKLLDQSATELGLRVSDQQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F D +F +D +++ L + G + + ++R +V VG + P Sbjct: 120 AIMTEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R + Y +++ A + ++ +F+ + +PE + YI Sbjct: 179 EI--SYLAGIQGQTRDIRYHIVDASPFVADVEVTDEQAQSFFDANLAQFMSPETLSLEYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQ 288 + + + +++ E QA Y++NK++Y E R ++ ++ +A+ + Sbjct: 237 ELNATDMANDVTVTDAEAQAYYDENKQQYLKAEKRLAAHILINLGDDESASKAKAEAIYA 296 Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 L+ G F QLA+ EQG L G + +++ D ++SL+ KG ++ Sbjct: 297 KLQAGDDFAQLAKTESEDTFSGEQGGQLDWFEQG------VMELAFDDVLYSLS-KGSYS 349 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 V+ SFGY I + +I+P F +VK I Q++ Sbjct: 350 TVVKTSFGYHIIKLLDIQPEVEAPFVDVKDKIIAQLK 386 >gi|307129932|ref|YP_003881948.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937] gi|306527461|gb|ADM97391.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937] Length = 626 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 101/442 (22%), Positives = 197/442 (44%), Gaps = 36/442 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + Sbjct: 1 MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSGD-YAAKVNGQEITRAQLEQGV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + + L K++L L+ + Q+ +GL +V Sbjct: 60 QNERSRQQEMLGENFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F +D +++++ + G+ D Y + L + + + G+ ++ Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQLGLTP----DAYAQFLRKQLLTQQLIRGLGNTDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D ++R++ ++ S+ + ++++ K+ Y APE ++S Sbjct: 175 VLQQELDNLVAMASQDRTIRTATIDLSARARNQTVSDEEVKNFYDQNKNRYLAPEQFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI+ D K ++ N ++ A YE++K ++ PE + + + +A A + LKKG Sbjct: 235 YIMLDAASIMDKTKVDNADIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAALEQLKKG 294 Query: 294 KKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ + S + G ++ D S D I L +KG + VI S GY+I Sbjct: 295 ADFAALAKEKSTDIVSRRNGGDLG--WMDDGSTVDEIKQAGLKQKGQLSDVIKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE------- 403 + +I+ + EV+ D+A EKVK + K L+ F +L + E Sbjct: 353 IRLDDIQAQHVKALDEVRADLA---------EKVKRE-KSLDAFYSLQQKISEAASNDNE 402 Query: 404 -ISRREKIVSIDLPLVDFAGKD 424 ++ EK+ +I D+ +D Sbjct: 403 SLASAEKVANIKAVQTDWFTRD 424 >gi|197334554|ref|YP_002155561.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11] gi|197316044|gb|ACH65491.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11] Length = 618 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 13/380 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR+ S KI L ++ F+ G+ L G VG +++ + F + Sbjct: 1 MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + + A K +LD +V+ A LD +D+GL ++ Sbjct: 60 QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSN 176 I P F KD KF +++ L R G + + + + L+R +V + SN Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + QA + R + I LN A ++ +T+++ K + PE ++SY+ Sbjct: 179 EVQAQAA-LETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGKK 295 + + + I++ E++ Y+ N +KY + E R V L+ ++ +A + + G+ Sbjct: 238 LSGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGED 297 Query: 296 FIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A++ + + SLG + I D D+ F LAK GD + ++ +FG+ I Sbjct: 298 FATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHII 356 Query: 352 HVSNIKPSFTVSFQEVKKDI 371 ++ I+ T EV DI Sbjct: 357 QLNGIEEPTTKPLAEVSADI 376 >gi|59711407|ref|YP_204183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri ES114] gi|59479508|gb|AAW85295.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri ES114] Length = 618 Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 13/380 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR+ S KI L ++ F+ G+ L G VG +++ + F + Sbjct: 1 MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + + A K +LD +V+ A LD +D+GL ++ Sbjct: 60 QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSN 176 I P F KD KF +++ L R G + + + + L+R +V + SN Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + QA + R + I LN A ++ +T+++ K + PE ++SY+ Sbjct: 179 EVQAQAA-LETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGKK 295 + + + I++ E++ Y+ N +KY + E R V L+ ++ +A + + G+ Sbjct: 238 LSGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGED 297 Query: 296 FIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A++ + + SLG + I D D+ F LAK GD + ++ +FG+ I Sbjct: 298 FATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHII 356 Query: 352 HVSNIKPSFTVSFQEVKKDI 371 ++ I+ T EV DI Sbjct: 357 QLNGIEEPTTKPLAEVSADI 376 >gi|326403424|ref|YP_004283505.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301] gi|325050285|dbj|BAJ80623.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301] Length = 628 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 129/638 (20%), Positives = 251/638 (39%), Gaps = 26/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +IR+ W+ + F VVL F+ WG+S + + S + +VG Q + + ++ Sbjct: 1 MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI-----GLEADHGRV 115 ++ L + + NS R S G ++++ + G +D+ ++ G+ A + Sbjct: 61 QRTLNAYATQ-----NSGREPSKG-ERRLFADQALGTAIDRAAMELEARRMGVVAPPAAI 114 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 ++ P FHG D KF F + LA + ++ L + ++ G+ Sbjct: 115 RQQVFAIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAP 174 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+DQ + + R+V + L P+ VL +++ + + P + + Sbjct: 175 APLVDQIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVV 234 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + +S E+ A+Y++ K K+ RTVE + + K A ++ K G Sbjct: 235 VLSPALIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKNAAALAKAWKGGAD 294 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + + + + + + +K + A G+ + + G+ G + V+ Sbjct: 295 WAAMQKAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTK 354 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 V I ++++ KA V L++ LA T++ ++ + + Sbjct: 355 AVAGGDKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV 414 Query: 416 PLVDFAGKDVKGKEVAAIPYK---EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 VD G V GK A IP Q + + P + V+ P SY + + I Sbjct: 415 S-VDREGMTVDGKP-AGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRII 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 + ++V DV DW + + A +L L K GK G ++ T+ Sbjct: 473 KPALKPYDKVKADVLADWTGAQVERQEEVAAAKL-LTAVKGGKTLAAAASAAGLTVTTSA 531 Query: 533 QINRMDNENKFFGYDGISQV-FS---GPVEMVKCFPIENGLSYVVFKVTNSKVGP-VQEK 587 + R ++QV FS G MV+ E + VV + K G Sbjct: 532 PMTRAKPAKGV--PPQLAQVAFSLKKGAPTMVQTQ--EGFVVGVVSDIAEPKPGSDAAFH 587 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + L Q M +D+L + A L+ + V ++ L+ + Sbjct: 588 QRVADSLGQSMQEDVLQTYAAALRQRDHVKINTKLLNQ 625 >gi|262042477|ref|ZP_06015636.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040181|gb|EEW41293.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 638 Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 133/645 (20%), Positives = 285/645 (44%), Gaps = 43/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 16 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 E + Q++G N ++ + +++L+ L+ + LDQ+ ++GL +V Sbjct: 75 ASERNRM-QQLGDQFSELAANENYMKT--MRQQVLNRLIDESLLDQYARELGLSISDEQV 131 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MR 173 I ++ F + KF + F +A+ G+ +Y L+ ++ G M Sbjct: 132 KQAIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFML 190 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 P DQ + R V +N + A S+ + ++++ + + APE R+S Sbjct: 191 PGES--DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVS 248 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG Sbjct: 249 YIKMDAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKG 306 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + G ++ D S + L +KG + VI S G+++A Sbjct: 307 ADFATLAKEKSTDIISARNGG-DMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVA 365 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRREK 409 + +++P+ +V+ DIA +++ EK + Y L++ ++ S D ++ + Sbjct: 366 RLDDVQPAQVKPLADVRNDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLASAAQ 421 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-Q 467 + + + + G+D +E+ P + + + G++ + + DG +V + Sbjct: 422 VAGLKVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLR 481 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I E + L EV V K K ++ +A++L L K+GK + K G S Sbjct: 482 ISEHKAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKL-LAALKDGKGDEAM-KTAGLS 539 Query: 528 LLTTNQINRMDNENKFFGYDGISQV-FSGPV--EMVKCFPIENGLS--YVVFKVTNSKVG 582 ++R G D +SQ+ F+ P+ + + + + + V+ + K G Sbjct: 540 FGAPQTLSRT-------GQDPLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAG 592 Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 P ++K + +TQ + +++++ L+ + + D++ Q+ Sbjct: 593 SMPEEQKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 637 >gi|269958860|ref|YP_003328649.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale str. Israel] gi|269848691|gb|ACZ49335.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale str. Israel] Length = 632 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 121/519 (23%), Positives = 221/519 (42%), Gaps = 38/519 (7%) Query: 12 WVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 +V + VL FV F+ +G + V VG + + +++ EL I Sbjct: 7 FVGAVLAAVLCAFV-FVTFGSVLPFGDTASDRCVAKVGSNCLSLREYSTAYQGELAYIES 65 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + ++ + R G+ + L+ ++ L++F ++GL + I P+F K Sbjct: 66 LVHQKLSEDDIRRFGVKEMTLNRMIDDMVLEKFARELGLRVSSKSIRDLIGDMPMFQDKS 125 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTK-----MLSRT------DVVGMFVGGMRPSNLL 178 K F L+ G+ E YI MLS V + G L Sbjct: 126 GKLDERRFKDLLSDAGMTEASYIGKVRGSLPAFMLSECIFPRSGAVYSQYYDGFAQDVL- 184 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYIL 236 R ++R VD + ++ V P++ L + + N PEY+ Y++ Sbjct: 185 -----RGIMQSRIVDVVEISPSAVENTPTPTDNDLEAMYSEGTRNGELVMPEYRSAKYMI 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++ S+DE+++E KN E + + R V LVF ++ EAD A Q+LK GK F Sbjct: 240 VSEDDALEEVTASDDEVESEI-KNSELH---DQRDVLNLVFSSESEADAASQALKGGKTF 295 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + ++ G ++ I+L + +KE +P V + ++F L G+ + V G+ I + N Sbjct: 296 EAVVKDAGTTVEAITLKNVTKELLP-VEVRSAVFGL-NDGEVSGVFRSVVGWHIMKILNR 353 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISR--REKIVSI 413 P +++K+ +A ++ KA E ++ E ++ G S E+ R+ + + Sbjct: 354 HPISKEDLKKLKERVAASIKRQKARELFSAGIRKANEMISHGAESFSEVESVFRKPTMGV 413 Query: 414 DLPLVDFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 L D G+D+ GK E ++ P + L + H V++ + +Y V + Sbjct: 414 -LQNFDSNGQDLTGKGHTYAEESSFPGIVEALPALAFSSQVGKPSHFVSIGN-AYFSVIV 471 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 + PAR R +E + WK A E+ A+ LV Sbjct: 472 TDVTPARARTFDESKHLLLDRWKNAFVAGEMRKIASNLV 510 >gi|333010902|gb|EGK30328.1| PPIC-type PPIASE domain protein [Shigella flexneri K-272] gi|333020704|gb|EGK39964.1| PPIC-type PPIASE domain protein [Shigella flexneri K-227] Length = 623 Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 138/652 (21%), Positives = 283/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + F D KF + + L + G+ D Y + L + G+ ++ Sbjct: 119 QAIFATSAFQ-VDGKFDNSRYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L D+ + R V ++ + A + + ++E+ K+N+ E R+ Sbjct: 174 FMLKGETDELAALVAQQRVVREATIDVNALAAKQPATEQEIASYYEQNKNNFMTSEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI ++ + S+ ++Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLVAAMMQQPV--SDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 G F LA+E+ + G ++ D ++ D + L +KG + VI S G++I Sbjct: 292 GGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLI 350 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRRE 408 + +I+P+ S EV+ DIA +++ EK + Y L++ ++ S D ++ E Sbjct: 351 VRLDDIQPAKVKSLDEVRDDIAAKVK----HEKALDAYYALQQKVSDAASNDTESLAGAE 406 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV- 466 + + + KD +E+ P + + + G++ + + DG +V Sbjct: 407 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ E P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 467 RVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGL 524 Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSY----------VVFK 575 ++R G D ISQ F+ P P ++ SY V+ Sbjct: 525 KFGEPKTLSRS-------GRDPISQAAFALP------LPAKDKPSYGMATDMQGNVVLLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 572 LDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|283479299|emb|CAY75215.1| putative protease maturation protein [Erwinia pyrifoliae DSM 12163] Length = 623 Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 118/536 (22%), Positives = 237/536 (44%), Gaps = 43/536 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGD-YAAKVNGQEIGRAQLERAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G V+ + ++ L L+ L Q+ ++IGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + ++S + G +Y + K L+ ++G G ++ Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTG----TDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D + R V + +N + A + + + ++++++ + +PE R+S Sbjct: 175 VLGNETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D + + S ++Q+ Y+++++ Y P+ + + EA +L KG Sbjct: 235 YIKMDASAMLQPV--SESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E KS IS +G E PD L ++ +L +KG + VI S G Sbjct: 293 GSFAKLAKE--KSADPISARNGGDMGWLEPETTPD-ELKNA--ALKEKGQLSDVITSSVG 347 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405 +++A + + +P + EV +IA +++ EK + +L++ ++ S D ++ Sbjct: 348 FIVARLDDTQPEKVKALSEVHDEIARKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403 Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E++ + D+ +D +K K V + LL G++ + V D Sbjct: 404 SAEQVAGVKAVDTDWFDRDNLPAELKFKAVQDAIFNGALL----GENGAPGSNSEVITVD 459 Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 G +V +I+E P + L++V + K K ++ ++A++L+ E K GK Sbjct: 460 GDRAFVLRIREHKPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514 >gi|86148518|ref|ZP_01066806.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222] gi|85833709|gb|EAQ51879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222] Length = 621 Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 84/400 (21%), Positives = 174/400 (43%), Gaps = 10/400 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVG-SYITGGGNNAAAKVGNTEIARGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G A ++ K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPTYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ S L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + ++++ Y PE ++SYI Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKNIELTDEQIELYYQENPAAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ E A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LAEE+ +G + + + D + D+ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALVNIGDTTGLVKSDFGYHIIK 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +K S + EV +I ++ A ++ E LE Sbjct: 359 LDELKASQAQPYTEVAAEIKTELLDQHAVDQFYEQQTELE 398 >gi|295096773|emb|CBK85863.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 623 Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 186/394 (47%), Gaps = 28/394 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L ++ L+ L+ A LDQ+ + +GL +V Sbjct: 60 AGERNRMQQQLGDQY-SELAANEGYMKNLRQQTLNRLIDEALLDQYAKSLGLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + F + KF + + S + + G+ +Y L+ ++ VG ++ Sbjct: 119 KAIFSTQAFQ-SNGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVG----TD 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L ++ + R V ++ + A S+A + ++E+ K+N+ +PE R+ Sbjct: 174 FMLKGETEELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAYYEQNKNNFISPEQFRV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ ++ E+Q+ Y+++++++ P+ + + EA L K Sbjct: 234 SYIKLDAAAMQENA--TDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEAEAKAVLDELNK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA + KS IS +G + PD L ++ L +KG + VI S Sbjct: 292 GADFATLA--KAKSTDIISAKNGGDMGWLEESTTPD-ELKNA--GLKEKGQLSGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 G+++A + +I + T +V+ DIA +++ KA Sbjct: 347 GFLVARLDDIVAAKTKPLADVRDDIAAKVKQEKA 380 >gi|156973716|ref|YP_001444623.1| peptidyl-prolyl cis-trans isomerse [Vibrio harveyi ATCC BAA-1116] gi|156525310|gb|ABU70396.1| hypothetical protein VIBHAR_01421 [Vibrio harveyi ATCC BAA-1116] Length = 619 Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 89/406 (21%), Positives = 184/406 (45%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + V G++ + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGNNNAAAKVGNTEIARGEFEMA 58 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + KF +++ + L R G + + ++ + L R + ++ S Sbjct: 119 SMILDMPQFQS-NGKFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLNALQTSE 173 Query: 177 LLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L + + + R V I ++ D ++ + +++ + + PE ++ Sbjct: 174 FTLPGEVQSEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPEMFTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290 +YI E +K+I+IS+++++ Y+++ +KY + E R V ++ E A L Sbjct: 234 AYIELSADELKKQIQISDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LAEE+ G + + LG ++ + D + ++ F+L GD T ++ F Sbjct: 294 NGGADFAKLAEEKSNDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDITGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I + +K + F EV +I +M KA ++ E LE Sbjct: 353 GYHIIKLEELKGAVAKPFSEVAAEIKQEMVDQKAVDQFYELQNELE 398 >gi|237653309|ref|YP_002889623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T] gi|237624556|gb|ACR01246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T] Length = 631 Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 135/659 (20%), Positives = 281/659 (42%), Gaps = 67/659 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M E +R R VA++ L +L VPF +G+ DA FS SGS+ VG + F + Sbjct: 1 MFEAVRNNKR--VAQVILALLIVPFAFFGM-DAYFSDSGSANEAARVGGTTIGAWEFDQA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ + Q G V+ +S L + +L+NL++ L + + L ++ I Sbjct: 58 LREQQDRLRQDGGGQVDRALLQSAELRRAVLENLINQRVLALYAAENRLVVTPQQLQETI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNL 177 A F ++ FS + + L +G+ + + + +V VG G+ P Sbjct: 118 AGVASFQ-ENGSFSLQRYETLLRAQGMTPATFEARLAQDVRVQQIVAA-VGDAGIVPQA- 174 Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 A+RF E+RSV L+ + + A +A ++ ++E + P + Y Sbjct: 175 ---SARRFLDAQLESRSVREFRLSAKALAADVKVDDAQVSAYYEANPTRFERPARLQAEY 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQS 289 ++FD E+ +E+++D ++A Y+ N +++ PE R ++ Q E D Sbjct: 232 LVFDRAAVERGVEVADDAVRAFYDGNPQRFGVPEERQARHILLALDQGAEQAEVDRVMAE 291 Query: 290 LKK--------GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + +F LA+E+ G + + LG F++ + + D++FSL +KG Sbjct: 292 ARALVEQLRADPARFAALAKEKSQDPGSAGNGGDLGFFARGVMVG-AFEDAVFSL-QKGV 349 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + FG I V++IKPS F+ V+ +I ++R +A + E ++ + Sbjct: 350 IGEPVRSDFGVHIVEVTDIKPSSVKPFEAVRAEILAELRAQEAGRRFAELAEQFSNTVY- 408 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--- 454 D + + + + D+ +D +A E+++ +FG D+ + K Sbjct: 409 -EQPDSLQPAAEALGLKTATTDWISRDSAPAPLA----DERVISALFG-DEAVQKSRNTE 462 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + + +G+ + ++K PAR L+EV + + ++ +++A + +L + G Sbjct: 463 AIEIGNGTLVSARVKAFEPARRLPLDEVRERI-VELVRIEQGRVKATRAGEEMLAALRRG 521 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS---- 570 + + ++ + VFS E P+ G+ Sbjct: 522 EQ----------PAARWGEARKLQRGAPGLPAAAMQAVFSASAE---TLPVHVGVQSTEG 568 Query: 571 -YVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 YV++++ + + + D ++ +T Q++ + ++ L+ +Y VT++ +Q Sbjct: 569 DYVLYRIEAVERAQIGDADPRVAAVTGQYKQLLAGRDFGAFLSELRQRYEVTINPTALQ 627 >gi|157374684|ref|YP_001473284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis HAW-EB3] gi|157317058|gb|ABV36156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis HAW-EB3] Length = 621 Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 195/413 (47%), Gaps = 28/413 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59 Query: 61 KQELGMISQKIG--FVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G F S R + + + +L+ LV+ LDQ D+GL ++ Sbjct: 60 QNERARLEQQLGEMFAALSADERYLSSVKQSVLERLVAEKLLDQTATDLGLRVSDAQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRP- 174 I P F D F +D + + L + G + D ++R +V VG + P Sbjct: 120 AIMTEPAFQ-TDGVFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPG 178 Query: 175 -SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +N L D + R + Y ++ A A ++ +++ + +PE + Sbjct: 179 EANYLAD----IQGQTRDIRYHWVDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLE 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEA 286 YI + + + +S++E + Y++NK++Y E R ++ + +A+ Sbjct: 235 YIELNAKDMAAGVTVSDEEAKTYYDENKQQYLKAEKRLAAHILVSLGDDDSTAKAKANAI 294 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIH 343 + L+ G++F +LA+ + + G + P V + + ++SL+K G+++ V+ Sbjct: 295 YAKLQAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVMEPAFDEVLYSLSK-GEYSAVVK 353 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 SFGY I + +++P+ +F++VK I Q++ +A ++ Y L++ LA Sbjct: 354 TSFGYHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQ----YFGLQQTLA 402 >gi|195936005|ref|ZP_03081387.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O157:H7 str. EC4024] Length = 608 Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 172/371 (46%), Gaps = 20/371 (5%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 ++ V F++ G+S L G++ V Q++ F N++ E + Q++G SE Sbjct: 5 IIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQY-SEL 62 Query: 80 ARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 A + G L +++L+ L+ A LDQ+ ++ L +V I +P F D KF + Sbjct: 63 AANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDGKFDNS 121 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRS 191 + L + G+ D Y + L + G+ ++ +L D+ + R Sbjct: 122 RYNGILNQMGMT----ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRV 177 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 V ++ + A + + ++E+ K+N+ PE R+SYI D ++ + S+ Sbjct: 178 VREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPV--SDA 235 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 +LQ+ Y+++++++ P+ + + EA L KG F LA+E+ + Sbjct: 236 DLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISAR 295 Query: 312 LGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G ++ D ++ D + L +KG + VI S G++I + +I+P+ S EV+ Sbjct: 296 NGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRD 354 Query: 370 DIANQMRITKA 380 D+A +++ KA Sbjct: 355 DVAAKVKHEKA 365 >gi|58697113|ref|ZP_00372552.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225630407|ref|YP_002727198.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi] gi|58536595|gb|EAL59930.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592388|gb|ACN95407.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi] Length = 599 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 134/625 (21%), Positives = 282/625 (45%), Gaps = 43/625 (6%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + + K+ +V+L + G+ + L V VG++ + + + ++ IS Sbjct: 4 KNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS- 62 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 G + E+ + + D +L+ L+ L ++GL + I + F Sbjct: 63 --GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDK 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-------LLDQA 182 +F + F L + EKEYI K+L MF+ + N + +Q Sbjct: 119 GEFDKNKFHETLNDLHMTEKEYIAKLEKILPAM----MFMTSLFKDNYPVTFGEKIDEQI 174 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 ++ R VD + + V I +P + L +E+ K ++ PEY+ YI + Sbjct: 175 YNSRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYF 234 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301 E +I+IS++E+ E+ + + + R + ++F ++EA+ A ++ ++GK F Q+ E Sbjct: 235 EDQIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVE 290 Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 291 EFGKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQIS 348 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++KKDI + + K+ E+V + ++ + G++++EI + + VD Sbjct: 349 DEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDA 408 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G V L+ +F ++ K + + D + + V+I + +P + + E Sbjct: 409 SGKDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFE 463 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 E + W+ +E + + ++ E++ + + D K G L+ Q++R + + Sbjct: 464 EGRASAVELWQ----SEFIKERMFKIGQEFAVQLREKTDWEKIQGVELVEDQQMHR-NEQ 518 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 N F + + ++F+ PI+ N + V K +S G + D + Sbjct: 519 NYPFSF--VEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMIS-- 574 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623 L + +I+YL+S+Y V V+ ++ Sbjct: 575 ---LKEQLISYLESKYKVEVNHAIL 596 >gi|304322182|ref|YP_003855825.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula bermudensis HTCC2503] gi|303301084|gb|ADM10683.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula bermudensis HTCC2503] Length = 616 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 143/641 (22%), Positives = 277/641 (43%), Gaps = 51/641 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML RKA++ A + L + + F G+ S SG + VG ++ + Sbjct: 1 MLTTFRKATKGVGAWVVLGLAILAFAFVGVP--TLSGSGGQEAIRVGGTVFEVAAVEEEF 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + E A + GL +++ + A + + + +GL + + Sbjct: 59 SRRFQRQQRGENAPASREEAVAAGLLDQVVRDYGLRALILEEADTLGLAVSPEMLTTYLR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-----KMLSRTDVVGMFVGGMRPS 175 P F +D +F + F LA ++ E D + L+R G+ + Sbjct: 119 AQPAFLDEDGEFDSNRFNRVLAANQLSLTELRDRLSLELIEGQLNRAVATGVGAPAILAQ 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +L L Q E R V + + P IA PS L Q++E+ + YR E + +Y+ Sbjct: 179 SLALRQG-----EERDVSLVTFS---APEIAAPSEENLRQYYEERQGRYRTGEARGFTYL 230 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L +I IS+++++ Y+ +PEIR++ Q F + A +A +++ G Sbjct: 231 LLTDDTIGAEIAISDEDVRQLYDARVGSLGTPEIRSLTQAQFRDASAARDALAAIEAGAA 290 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F E G +L+ +L ++ I D ++A++ F+ A P I G FG V+ +++ Sbjct: 291 FNDAVEAAGGTLA--TLDGVTESAIADQAVAEAAFAAASPAILGP-IDGIFGTVLVNLTQ 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I P+ T SF+EV++D+ +R +++ + Y ++ GT + E ++ Sbjct: 348 IVPATTPSFEEVREDLEAALRQEDLGQRIDDIYTEIQFAGDDGTPLAEAAQG-------- 399 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQ----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 +D + + K +AA+ ++ LL VF P + V LP+G + ++ E Sbjct: 400 --LDLSAVTISPKPLAALQDDDRLPPALLAAVF-TTAPGAYFEEVRLPEGGVAFFELGEI 456 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI----GKNLGAS 527 +P+ + E V +V DW+T + E + + V+ +G++F D G+ + Sbjct: 457 VPSSVQPFEAVEEEVATDWRTDQRIEALRG-VREAVMSAIADGQSFADAVAAEGETVSTR 515 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK-VGPVQE 586 L+ N +N D+ + +FS P+ V + + KV + + + P Sbjct: 516 TLSANVLN--DDLPPAL----VEAIFSRPIGEVLDALGSDRTDLTLAKVEDVRFIAPSTA 569 Query: 587 KDKFISYLTQMMNKDLLDSVI-AYLKSQ---YSVTVHDNLI 623 ++ L Q +++D+ + AYL S Y + V+D L+ Sbjct: 570 PS--LAQLRQTLSRDIATDLFEAYLLSAEQDYGIRVNDGLL 608 >gi|114048051|ref|YP_738601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7] gi|113889493|gb|ABI43544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7] Length = 621 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 126/537 (23%), Positives = 237/537 (44%), Gaps = 50/537 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSQS-DVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G F S R + + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + + ++R + VG + Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175 Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L +AK+ + R + Y+V+++ A A ++ + +++ + + +PE + Y Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKE------ADEAF 287 + + + K +++++E QA Y+++K +Y S E R L+ P E A++ Sbjct: 236 VELNSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAVAKAKAEDLA 295 Query: 288 QSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 + L G F +LA+ EQG L G + D S ++F+L +KG Sbjct: 296 KQLDNGADFAELAKANSEDTLSAEQGGKLDWFEPG------VMDPSFDTALFAL-QKGQH 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + V+ FG+ I + +++P TV F +VK I Q++ KA ++ + L+ LA Sbjct: 349 SAVVKTDFGFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQ----FYSLQSKLA-D 403 Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--- 452 TS D ++ K+V +++ +D +V A K ++ F D L + Sbjct: 404 TSYEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFS-DTVLRQGLN 458 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + L + +++KE A L EV D+ K + E +KA +L+ + Sbjct: 459 SEVLELEPNHVVVIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQ 515 >gi|58040710|ref|YP_192674.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H] gi|58003124|gb|AAW62018.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H] Length = 645 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/399 (22%), Positives = 182/399 (45%), Gaps = 8/399 (2%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDAL--FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 +W + +++F+ F+ WG+ D + S+ VV VG + + F + +L ++ Sbjct: 12 SWAGRAAALLIFLAFIGWGVGDVYSNMGTASSNEVVRVGDRSITPDDFSRALSAQLPEVA 71 Query: 69 QKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 ++IG S+ + + ++ L NLV G+ V E+ P FH Sbjct: 72 RRIGLADPSKLPKGEVEQIARQTLQNLVIQNETQLAAARAGMMVPDDLVRQEVFAIPAFH 131 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 +F VF RL R G++E + + + + SR + GM + PS+L D+ F Sbjct: 132 NAAGQFDRSVFNDRLTRIGLSEGKLLQAIREDIASRGLLQGMGQSVVAPSSLT-DRMLSF 190 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 R D + + A P++ L ++++ + +R EY+ ++ K Sbjct: 191 DASQRIFDLVQIPFASGVVAAAPTDDQLHRFYDNHPQMFRTTEYRHAKMVVMTSDSVAKT 250 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 IE+ +D L Y+ + PE RT++ L F +Q +AD A + K G + + +++ Sbjct: 251 IEVPDDVLHRLYDFQARTFDMPETRTIQVLTFTDQAKADAAATAWKSGTSWDDI-QKKFP 309 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + +SL S + IP+ LA + F+ P G G+V+ +++ I +F+ Sbjct: 310 EAAAVSLPSVRQSDIPNPELAKAAFAAPSDRISGPEKTG-MGWVVFNITAITAPHKTTFE 368 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 + K + Q++ +A E ++ K+ ++ +A +++++I Sbjct: 369 QAKDGLKTQVQTQEAGEALQARQKQFQDAVAGSSTLEQI 407 >gi|271499601|ref|YP_003332626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech586] gi|270343156|gb|ACZ75921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech586] Length = 626 Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 96/415 (23%), Positives = 185/415 (44%), Gaps = 28/415 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ F++ G+ D L SG V Q++ S Sbjct: 1 MMDNLRAAANNVVLKVILALIIGSFVLTGVGDYLIRGSGD-YAAKVNGQEITRSQLEQGV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + + L K++L L+ + Q+ +GL ++ Sbjct: 60 QNERNRQQEMLGDNFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F +D +++++ + G+ D Y + L + + + G+ ++ Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQMGLTP----DAYAQFLRKQLLTQQLIRGLGSTDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D ++R++ L+ S+ + ++++ K Y APE ++S Sbjct: 175 VLQQELDNLVAMAAQDRTIRTATLDLGVRARSQTVSDDEVKNFYDQNKSRYLAPEQFKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI+ D K ++ N+++ A YE++K ++ PE + + + +A LKKG Sbjct: 235 YIMLDAASIMDKTKVDNNDIAAYYEQHKGEFTQPERKKYSVIQLKTEADAKVVLDQLKKG 294 Query: 294 KKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVI 350 F LA+E+ + S + G ++ D S D I L +KG + VI S GY+I Sbjct: 295 ADFAALAKEKSTDIVSRRNGGDLG--WMDDGSTVDEIKQAGLKQKGQLSDVIKSSVGYLI 352 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + +I+ + EV+ D+A EKVK + K L+ F AL + E + Sbjct: 353 IRLDDIQAQRVKALDEVRADLA---------EKVKRE-KSLDAFYALQQKVSEAA 397 >gi|259909248|ref|YP_002649604.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia pyrifoliae Ep1/96] gi|224964870|emb|CAX56392.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia pyrifoliae Ep1/96] Length = 622 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 117/535 (21%), Positives = 236/535 (44%), Gaps = 43/535 (8%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGD-YAAKVNGQEIGRAQLERAFS 59 Query: 62 QELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E Q +G V+ + ++ L L+ L Q+ ++IGL ++ Sbjct: 60 SERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F D KF + ++S + G +Y + K L+ ++G G ++ + Sbjct: 120 IFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTG----TDFV 174 Query: 179 L----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L D + R V + +N + A + + + ++++++ + +PE R+SY Sbjct: 175 LGNETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSY 234 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D + + S ++Q+ Y+++++ Y P+ + + EA +L KG Sbjct: 235 IKMDASAMLQPV--SESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGG 292 Query: 295 KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F +LA+E KS IS +G E PD L ++ +L +KG + VI S G+ Sbjct: 293 SFAKLAKE--KSADPISARNGGDMGWLEPETTPD-ELKNA--ALKEKGQLSDVITSSVGF 347 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISR 406 ++A + + +P + EV +IA +++ EK + +L++ ++ S D ++ Sbjct: 348 IVARLDDTQPEKVKALSEVHDEIARKLK----QEKAVVAFYKLQQKVSDAASNDNESLAS 403 Query: 407 REKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 E++ + D+ +D +K K V + LL G++ + V DG Sbjct: 404 AEQVAGVKAVDTDWFDRDNLPAELKFKAVQDAIFNGALL----GENGAPGSNSEVITVDG 459 Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 +V +I+E P + L++V + K K ++ ++A++L+ E K GK Sbjct: 460 DRAFVLRIREHKPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 513 >gi|146310569|ref|YP_001175643.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter sp. 638] gi|145317445|gb|ABP59592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp. 638] Length = 624 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 136/652 (20%), Positives = 282/652 (43%), Gaps = 56/652 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M++ +R A+ + V KI ++ + F++ G+S L + GSS V Q++ F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIILSFILTGVSGYL--IGGSSNYAAEVNGQEISRGQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L ++ ++ L+ A LDQ+ + +GL +V Sbjct: 59 FAGERNRMQQQLGDQF-SELAANEGYMKTLRQQTVNRLIDEALLDQYAKRLGLGISDDQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + F + KF + + + + + G+ +Y L+ ++ VG + Sbjct: 118 KKAIFSTQAFQ-TNGKFDNTRYNAIVNQMGMTADQYAQALRNQLTSQQLINAVVG----T 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V ++ + A S+ + ++E+ K+N+ APE R Sbjct: 173 DFMLKGETDELAALVSQQRVVRAATIDVNALAAKQQASDEEVKAYYEQNKNNFTAPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + S+ ++Q+ Y+++++++ + + + +A L Sbjct: 233 VSYIKLDAATMPETA--SDSDIQSYYDQHQDQFTQAQRNRYSVIQTKTEADAKAVVDELA 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYV 349 KG F +A+ + + G ++ D + + + L +KG + VI S G++ Sbjct: 291 KGADFATVAKAKSTDIISAKNGG-DMGWLEDATTPEELKNAGLKEKGQLSGVIKSSVGFL 349 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EISRR 407 + + +I+P+ T EV+ DIA +++ EK + Y L++ ++ S D ++ Sbjct: 350 VVRLDDIQPAKTKPLAEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGA 405 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV 466 E+ + + + G D +E+ P + + + G + + + DG +V Sbjct: 406 EQAAGVKAVVTGWFGHDNLPEELNFKPVSDAIFNGGLLGDNGTPGNNSDIITVDGDRAFV 465 Query: 467 -QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ E + LE+V + K K ++ A +L+ E K GK + K G Sbjct: 466 LRVTEHKAEAIKPLEDVKDQIATLVKHTKAEQQAKLDAEKLLAEL-KAGKGDAAL-KAAG 523 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY----------VVFK 575 S ++R G D ISQ G P ++ SY VV Sbjct: 524 LSFGEAKTLSRT-------GQDPISQAAFGL-----SLPAKDKPSYGTASDMQGNIVVLA 571 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + K G P ++K + +TQ + +++++ L+ + + + D + Q+ Sbjct: 572 LDEVKAGTMPDEQKKAMVQGITQNNAQIAFEALMSNLRKEAKIKLGDIITQQ 623 >gi|328473322|gb|EGF44170.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus 10329] Length = 619 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/405 (20%), Positives = 183/405 (45%), Gaps = 20/405 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L + S +S VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNSAA-KVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R + ++ S Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLTALQSSEF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + + + R + + ++ + ++ + +++ DN+ PE ++S Sbjct: 175 TLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 Y+ +K+I++++++++ Y+++ +KY S E R V ++ E A L Sbjct: 235 YVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELN 294 Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +A+E+ G + + LG ++ + D + ++ F+L GD + ++ FG Sbjct: 295 SGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 Y I + +K + F EV +I ++ KA ++ E LE Sbjct: 354 YHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 398 >gi|260366277|ref|ZP_05778733.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus K5030] gi|308114046|gb|EFO51586.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus K5030] Length = 555 Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/405 (20%), Positives = 183/405 (45%), Gaps = 20/405 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L + S +S VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNSAA-KVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R + ++ S Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLTALQSSEF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + + + R + + ++ + ++ + +++ DN+ PE ++S Sbjct: 175 TLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 Y+ +K+I++++++++ Y+++ +KY S E R V ++ E A L Sbjct: 235 YVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELN 294 Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +A+E+ G + + LG ++ + D + ++ F+L GD + ++ FG Sbjct: 295 AGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 Y I + +K + F EV +I ++ KA ++ E LE Sbjct: 354 YHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 398 >gi|28897695|ref|NP_797300.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD 2210633] gi|260878350|ref|ZP_05890705.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus AN-5034] gi|260898294|ref|ZP_05906790.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus Peru-466] gi|260901515|ref|ZP_05909910.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037] gi|28805908|dbj|BAC59184.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD 2210633] gi|308088424|gb|EFO38119.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus Peru-466] gi|308092760|gb|EFO42455.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus AN-5034] gi|308110873|gb|EFO48413.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037] Length = 619 Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/405 (20%), Positives = 183/405 (45%), Gaps = 20/405 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L + S +S VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNSAA-KVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R + ++ S Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVRE----QLLTALQSSEF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + + + R + + ++ + ++ + +++ DN+ PE ++S Sbjct: 175 TLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 Y+ +K+I++++++++ Y+++ +KY S E R V ++ E A L Sbjct: 235 YVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELN 294 Query: 292 KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +A+E+ G + + LG ++ + D + ++ F+L GD + ++ FG Sbjct: 295 AGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 Y I + +K + F EV +I ++ KA ++ E LE Sbjct: 354 YHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 398 >gi|218888106|ref|YP_002437427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759060|gb|ACL09959.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 630 Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 121/557 (21%), Positives = 236/557 (42%), Gaps = 55/557 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE+IR +++W KI ++ + F+ WG+ S SG+ + +V ++ + F + Sbjct: 1 MLELIRAHAQSWGVKIAFGIIILVFVFWGVGSMHNSSSGA--LATVNKKPILIQEFGREY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + + + +E + +GL +++L +++ L IGL + I Sbjct: 59 ERQVETLRSRYPGI-TAEDMKQMGLKRQVLQAMITERLLADEAARIGLSVSPVELRRSIE 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR-----PS 175 F D +F +V+ S L + + + D R D M + +R P+ Sbjct: 118 SITAFRNGDGRFDAEVYRSVLKGQQTSPGRFEDGI-----RRD---MLLQKLRDRVAAPA 169 Query: 176 NLLLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 ++ ++A+ + E R+++Y++ P++ + + + + D +R P+ + Sbjct: 170 SVTDEEARALFDYGRERRTIEYVLFPLEDYVLKVTPTDEQIAERYNENMDAWRNPQRISL 229 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQK---------- 281 + +EI + A Y N E YF PE ++F Q+ Sbjct: 230 DAVTLTPASLATSVEIPESAVAAFYADNAETYFVVPERVHARHILFMAQEGASKDEDAAA 289 Query: 282 --EADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAK 334 +A++ LKKGK F LA +++G LG F+K + +P ++ F+L K Sbjct: 290 RAKAEDVIAQLKKGKDFASLAAKLSDDKGSGAQGGDLGWFTKGQMVP--PFEEAAFAL-K 346 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + + +FG+ + + + T + EV+ +I ++ KASE++ E E Sbjct: 347 PGEISAPVRSAFGWHVIKMEAHETQRTRALDEVRGEIRQRLGEEKASERMHEALDTALEM 406 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 G S+D+I++ K+ L A V A+ K Q + F D Sbjct: 407 AGAGKSIDDIAKALKLEHKPTGLFSRADAGV------AVGLKGQSVGTAFSTPAGTVIDT 460 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK-------TVKTAEEVSSK-ANQL 506 + + +G YM + ES P LE+V +V + VK A+E +K A+ + Sbjct: 461 PLEV-EGGYMIAAVLESQPESVTPLEKVKEEVAAQVRRIEGAKLAVKAAQEAGAKLADGV 519 Query: 507 VLEYSKEGKNFRDIGKN 523 E + K G+N Sbjct: 520 PAELAARVKTAEPFGRN 536 >gi|293392541|ref|ZP_06636861.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582] gi|291424943|gb|EFE98152.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582] Length = 627 Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 90/387 (23%), Positives = 175/387 (45%), Gaps = 12/387 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ + L SG V Q + + ++ Sbjct: 1 MMDNLRAAANNVVLKIILALIILSFVLTGVGNYLIGGSGD-YAAKVNGQVIERAQLEQAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + L ++ L L+ LDQ+ + +GL +V Sbjct: 60 QSERSRMQQQLGEQFSALAGNEGYMQQLRQQALSQLIDNMLLDQYAKKLGLSISDDQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPS 175 I ++P F + +F + ++ + R G + Y + L V+ F G + PS Sbjct: 120 AIRKAPYFQ-TNGQFDNAKYLDLITRMGYSADNYAQSMRQQLLNQQVIQAFGNSGFVLPS 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 D + R V ++ + A + S+ L +++ + K+++ APE +SYI Sbjct: 179 ES--DAMAALVLQERDVRLATIDLNALQAKQNVSDDELKEYYNQNKNSFIAPEQVEVSYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D + KI +++ ++ A Y+++K Y PE + + + EA L KG Sbjct: 237 PMDAAAMQSKITVNDADISAYYDQHKSSYGQPERKNYSVIQLKTEAEAKAVLDELNKGAD 296 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHV 353 F LA+E+ + G PD + AD + L++KG + V+ S GY+I + Sbjct: 297 FATLAKEKSTDIISKRNGGELGWLEPDTT-ADELKEAKLSEKGQLSGVVKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKA 380 ++++P EV+ IA++++ KA Sbjct: 356 NDVEPEKLKPLSEVRDSIADKVKQEKA 382 >gi|269961041|ref|ZP_06175410.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3] gi|269834260|gb|EEZ88350.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3] Length = 619 Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 90/421 (21%), Positives = 193/421 (45%), Gaps = 23/421 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 M++ +R+ + KI L ++ + F+ G+ + V G++ + VG ++ F + Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGS--YIVGGNNNSAAKVGNTEIARGEFEMA 58 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 59 YQNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + +F D++ + L R G + + ++ + L R + ++ S Sbjct: 119 SMILDMPQFQS-NGQFDQDIYQASLRRAGFSPDSFAEYMRRELVRE----QLLNALQTSE 173 Query: 177 LLLD---QAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L QA+ + + + R V I ++ D ++ + +++ D + PE ++ Sbjct: 174 FTLPGEVQAEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPDMFTRPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSL 290 +YI E +K++++S+++++ Y+++ +KY + E R V ++ E A L Sbjct: 234 AYIELSAEELKKQVQVSDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDEL 293 Query: 291 KKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +A+E+ G + + LG ++ + D + ++ F+L GD T ++ F Sbjct: 294 NAGADFATVAKEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMTGLVKSDF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405 GY I + +K + + EV +I +M KA ++ E LE+ S+D+ S Sbjct: 353 GYHIIKLEELKGAVAKPYSEVAAEIKQEMIDQKAVDQFYELQNELEKVAFEFPDSLDDAS 412 Query: 406 R 406 + Sbjct: 413 K 413 >gi|126735661|ref|ZP_01751406.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. CCS2] gi|126714848|gb|EBA11714.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. CCS2] Length = 612 Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 182/393 (46%), Gaps = 12/393 (3%) Query: 21 LFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 + V ++ GL A F G S + +VG + V S+ + +++ +S + G ++ Sbjct: 13 IIVGVILLGL--AGFGTGGLSGNIRNIGTVGDKDVTVVSYQRALNEQIRALSAQFGQQIS 70 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 ++A++ G+D+ L +V TLD ++G+ RV+ + P F G F+ + Sbjct: 71 FQQAQAFGIDQVALSQVVLLRTLDNEASELGISVGDERVFDRLQTIPSFQGA-GGFNRET 129 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + L + G E+ + + +RT + G V G+ + D +F E RS+ + V Sbjct: 130 YRLSLQQSGQTAAEFENGIREETARTLLQGAVVSGVPAPDAYADALVQFISETRSITWAV 189 Query: 197 LNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 ++ + A + + A ++++ + PE + I+Y+ + + +++ ++ Sbjct: 190 VDAGDLTAPVPGATEAAQQEYYDANPAEFTLPESRDITYVWLTPNMIIDDMVVADAAVEQ 249 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS 314 Y + ++ PE R VE+LV+ +Q A +A + G+ F L E+G L+DI LG Sbjct: 250 LYNQRIAEFVQPERRLVERLVYLSQDRAADAMARVNAGEATFEDLVAERGLRLTDIDLGD 309 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 S++ + S +++F+ A+ G + G + ++ + + + +E + ++ Sbjct: 310 VSQDDLG--SAGEAVFA-AETGTVVGPFNSPLGPALFRMNAVLAAQEIPLEEAAPRLRDE 366 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + A E + + + LA G +M +++ R Sbjct: 367 LATDAAREFINSSADPIIDLLAGGATMADLAER 399 >gi|74317691|ref|YP_315431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] gi|74057186|gb|AAZ97626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] Length = 647 Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 136/660 (20%), Positives = 270/660 (40%), Gaps = 67/660 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 +LE IRK ++ W+AK+ L ++ V F ++G+ + V VG+ + Sbjct: 15 VLEAIRKHAKGWLAKVILGLIAVTFALFGIDSYMSGDRSGGVVAEVGKVGITREELTREI 74 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + + +G + + K++LD+L+ L E + A V I Sbjct: 75 QAQSDRLRESLGPAFDPSMTETAAFRKQVLDSLIERKALLLEAEKLKFLAPDSYVAAAIG 134 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D KFS + + L + G + + + V + L+ Sbjct: 135 QIPAFQ-QDGKFSPQRYEAILRQNGRTPASFENELRQAFMLEGVTSPVTLAAFNATTTLE 193 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q R + R + ++ L V ++AD + A + + + K + PE R Y++ Sbjct: 194 QVARLVAQQREISWVDL---PVASVADEVKVTPADVERHYAANKPAFTEPEQIRAEYVVL 250 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286 D I +S ++ Y N ++ PE R+ ++ K++D A Sbjct: 251 DAAALVAGISVSEQAVRDYYAANAAQFGQPEQRSASHILIAADKDSDAATRAKAKAKATA 310 Query: 287 -FQSLKK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++L+K ++F +LA ++ G + D SLGSF + + D++F++ K P Sbjct: 311 LMETLRKQPERFGELARSTSQDPGSAEQDGSLGSFGRGMMVK-PFEDAVFAMKPKEIRGP 369 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V FGY I + +I+P EV+ I +++R ++ ++ + L + + Sbjct: 370 V-ESDFGYHIIRLDSIEPGKAAPLAEVRAAIVDELR----KQQAQKTFADLADNFSNLVY 424 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALP 459 + S + + L + + K A P+ L +F + S+ +T A+ Sbjct: 425 ENAESLQPAAAAAKLTVQQSGWMNAKA---APPPFDNPALSAALFSPESIKSRQNTEAIE 481 Query: 460 --DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEG- 514 G+ + ++ E AR R L EV ++++ + +TA+ ++ KA + L+ KE Sbjct: 482 IKPGTLVAARVVEHRAARLRPLSEVSAEIERTMRAEQTAQLLAKKAEATIKSLQDGKESG 541 Query: 515 ---KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENG 568 F+ +G+ GASL G+ VF E F +G Sbjct: 542 LDWTAFQVVGRQPGASLDAA----------------GVKAVFRANAEKTPAYTGFARPDG 585 Query: 569 LSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 SY + +VT + + P+ + S + Q + + ++IA + + + V + N I+ Sbjct: 586 -SYRIVRVTRVVEPASLDPML-MESIGSGVMQAQQRADMKALIALVTAGHKVKIQPNAIE 643 >gi|42520635|ref|NP_966550.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410374|gb|AAS14484.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 602 Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 134/627 (21%), Positives = 278/627 (44%), Gaps = 44/627 (7%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + + K+ +V+L + G+ + L V VG++ + + + ++ IS Sbjct: 4 KNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS- 62 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 G + E+ + + D +L+ L+ L ++GL + I + F Sbjct: 63 --GSDASREQVKKLKYD--LLNGLIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDK 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-------LLDQA 182 +F + F L + EKEYI K+L MF+ + N + +Q Sbjct: 119 GEFDKNKFYETLNDLHMTEKEYIAKLEKVLPAM----MFMTSLFKDNYPVTFGEKIDEQI 174 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + ++ R VD + + V I +P + L +E+ K ++ PEY+ YI Sbjct: 175 YKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQKYF 234 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301 E +I+IS++E+ E+ + K R + +F ++EA+ A ++ ++GK F Q+ E Sbjct: 235 EDQIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQIVE 290 Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 291 EFGKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAHQIS 348 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++KKDI + + K+ E+V + ++ + G+ ++EI + + VD Sbjct: 349 DEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGPVDA 408 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G V L+ +F ++ K + + D + + V+I + P + + E Sbjct: 409 SGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIFPPKLQSFE 463 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI--NRMD 538 E + W++ E + ++ ++ ++ D+ + G L+ Q+ N++D Sbjct: 464 EGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRNKVD 519 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596 +N F + + ++F+ PI+ N + V K +S G + D + Sbjct: 520 QQNYPFSF--VEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNTLDTGKRVMIS 577 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L + +I+YL+S+Y V V+ ++ Sbjct: 578 -----LKEQLISYLESKYKVEVNHAIL 599 >gi|121604540|ref|YP_981869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] gi|120593509|gb|ABM36948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] Length = 645 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 128/529 (24%), Positives = 230/529 (43%), Gaps = 46/529 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + IRK ++ +A +FL L VP F++ G++ S G V V ++ + Sbjct: 1 MFDFIRKHTKWTMALLFL--LIVPSFILVGMNSNPSSEKGG-VVAKVDGTEITQPEWDRE 57 Query: 60 WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +E+ + + +++S AR L++ + D +V+ A E + L + Sbjct: 58 HLKEVDRLRASMPTLDAKLLDSPEARYATLERMVRDRVVAVAA-----EKLKLSTSDQHL 112 Query: 116 WGEIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 E+ SP D D + L +G++ + + + LSR V+ G Sbjct: 113 ARELQNSPEIAALRRADGSLDMDRYRQLLGTQGMSPEMFEANVRTDLSRRQVLAGVSGSG 172 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 SN D A YFE R + N A P++A L Q+++ + ++APE I Sbjct: 173 FASNSAADMALNAYFEKREIQLARFNAADYAAKLTPTDADLEQYYKANEKLFQAPEQASI 232 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-------TVEQLVFPNQKE--- 282 Y+L D+ +K I ++ +L+ YE+N + E R T + P ++E Sbjct: 233 EYVLLDLEALKKGIAVNEADLKTYYEQNARQLSGTEERRASHILITASKTASPEEREKAK 292 Query: 283 --ADEAFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 A+E ++KK + F +A ++ G + + L F++ + S D+ FS+ K Sbjct: 293 TKAEELLATVKKSPENFADVARKNSQDPGSATNGGDLDFFARGAMVK-SFEDAAFSM-NK 350 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 GD + V+ FGY I +++IK +F+E++ + +++ +A +K E + Sbjct: 351 GDISEVVASDFGYHIIKLTDIKAPKQRTFEEMRPQLEAELQKQQAQKKFSEAAE------ 404 Query: 396 ALGTSMDEISRREKIVSIDLPL-VDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSK 452 A + E S K V+ L L V AG + V + L +F D K Sbjct: 405 AFSNGVYEQSDSLKPVAERLKLEVKTAGNVGRQPASGVTGALANPKFLTALFSPDSIEKK 464 Query: 453 DHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 +T A+ G V +I + PAR + L +V +V++ W ++AEE Sbjct: 465 RNTEAIEVGPSQLVSGRIVQYTPARTQPLADVKDNVRQRWLAQRSAEEA 513 >gi|288941155|ref|YP_003443395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium vinosum DSM 180] gi|288896527|gb|ADC62363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium vinosum DSM 180] Length = 645 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/413 (21%), Positives = 175/413 (42%), Gaps = 32/413 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ ++ W+A ++++ +PF +WG+ L V G +V ++P Sbjct: 1 MLQTIRERAQGWIAWAIVILISIPFALWGIQSYL-GVGGEPIAATVNGVEIPARELDRRV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + +++G + L ++L+ L+ A L + +GL V +I Sbjct: 60 QETRFELRERLGAAYDPAAFDDQRLRAEVLETLIQEALLMDVVGRLGLRVSDQEVQMQIL 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F D + L +G+ Y + +S T ++ + LD Sbjct: 120 SDPAFV-SEGRFDKDTYERLLRFQGLTPAMYEAQLRQKMSATQLIRAVSSSELATRAELD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 KR + R + Y+ L A +T +++ + +++PE R+ Y++ D Sbjct: 179 TYKRLMGQKREISYLRLPLAEHRTDEPIDEARITAYYDSNRARFQSPEQVRLDYLVLDTD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------------------N 279 K+E+S ++L+ Y ++ ++ PE R V L+ Sbjct: 239 ALSSKVEVSEEDLRQLYASDQARFAQPERREVRHLLLKVDADADEAAARAVLDEIQAIRA 298 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDF 338 + +A E+F+ L K L+++ G + SLG S +P + + F+L K G+ Sbjct: 299 RIQAGESFEELAK-----TLSQDPGSAAKGGSLGVIESGIMVP--AFDQAAFAL-KTGEL 350 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + FGY + V I PS F++V++ + ++ +A E +RL Sbjct: 351 SEPVRTPFGYHLIEVVQILPSKAKPFEDVREPLRAELAKQRAEGLFYELAERL 403 >gi|224582290|ref|YP_002636088.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466817|gb|ACN44647.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 623 Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 141/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S +NR D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLNRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|117618139|ref|YP_856546.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559546|gb|ABK36494.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 636 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 112/538 (20%), Positives = 233/538 (43%), Gaps = 34/538 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ VAK+ L ++ + F + G+ L + + +V + ++ N++ Sbjct: 1 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYL-NGPARTAPATVNGNDISSAALENAY 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + ++G N + + + +LD L+ A D ++GL ++ Sbjct: 60 RNERARMESQMGESFSQLAANPDYMKQ--FRRGVLDRLIDQALFDSKARELGLRVSDEQI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P F +D KF++D ++ + R G+ + + D + + R ++G +G Sbjct: 118 KQAIVAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFAL 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +Q + Y + R + + L S+ + Q+++ ++ E ++ Y+ Sbjct: 177 KGEAEQLDKLYNQTRDLRLVRLAASAYLGDVKVSDEEVEQYYKANSSHFMNDEQVKVDYL 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQ 288 L D K +++S + Q Y+++++ + E R V ++ P +++A+ Sbjct: 237 LLDAATLGKDVKVSEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLT 296 Query: 289 SLKKGKKFIQLAE-EQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 K G F LA+ + + S G ++ + D + + F+LAK GD + V+ Sbjct: 297 KAKAGDDFAALAKADSSDTFSAKKGGELDWFEKGVMDPAFEKAAFALAKAGDLSTVVKSP 356 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-----SEKVKEDYKRLEEFLALGTS 400 FG+ + + ++P+ T F +VK + ++++ KA +E+ K E +L + Sbjct: 357 FGFHVIKLLGVEPAQTKPFADVKAETISRLQADKAKELFFAEQQKMADSSFENPDSLDLT 416 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 D + K+ S A + +V + + EQL +DD + D + L D Sbjct: 417 ADTMGL--KVQSTGYFSQADAPAPLNDPKVLSAAFSEQL------RDDNTNSD-VIELAD 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 G + + I P + L EV V K K +E KA Q +L+ K G+N + Sbjct: 468 GKALVMHITGHQPKAAKPLAEVKEQVIAAIKHDKASEVARGKA-QGLLDKLKAGENIQ 524 >gi|113970826|ref|YP_734619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4] gi|113885510|gb|ABI39562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4] Length = 621 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 125/537 (23%), Positives = 233/537 (43%), Gaps = 50/537 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSQS-DVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G F S R + + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + + ++R + VG + Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175 Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L +AK+ + R + Y+V+++ A A ++ + +++ + + +PE + Y Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN-------------- 279 + + + K +++++E QA Y+++K +Y S E R L+ P Sbjct: 236 VELNSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLA 295 Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 Q + F L K L+ EQG L G + D S ++F+L KKG+ Sbjct: 296 KQLDNGADFAELAKANSEDTLSAEQGGKLDWFEPG------VMDPSFDTALFAL-KKGEH 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + V+ FG+ I + +++P TV F +VK I Q++ KA ++ + L+ LA Sbjct: 349 SAVVKTDFGFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQ----FYSLQSKLA-D 403 Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--- 452 TS D ++ K+V +++ +D +V A K ++ F D L + Sbjct: 404 TSYEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFS-DTVLRQGLN 458 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + L + +++KE A L EV D+ K + E +KA +L+ + Sbjct: 459 SEVLELEPNHVVVIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQ 515 >gi|149184601|ref|ZP_01862919.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21] gi|148831921|gb|EDL50354.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21] Length = 645 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 117/509 (22%), Positives = 209/509 (41%), Gaps = 16/509 (3%) Query: 13 VAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 +A FL ++ F +S+ A V+G +V VG K+ + + L ++ Sbjct: 17 IALAFLGLIGFAFASMDVSNTGAFGGVAGGDSVAVVGGSKISTAELNEAMDNALRRAREE 76 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 V +D+ +L+ L+ L + E+ G A V EI + P G Sbjct: 77 NPDVTMQTLIAEGEMDR-VLEGLIDRYALMAWAEENGFRAGANLVNSEIRQIPAARGPSG 135 Query: 131 KFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 F + + L I + + T + + V G P ++ A+ F E Sbjct: 136 NFETAAYEAFLRNNSITDSQLRQQLRTTVYFQQAVFPALYGTQLPESIARTYARSFK-ER 194 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 RS + DP++A L++++ + + + PE + + Y FD I S Sbjct: 195 RSGGIATIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRYATFDSSALGGSINPS 254 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309 ++++ A Y+ N E+Y + E R + QL+ P ++ A+ ++ G+ F Q A G L Sbjct: 255 DEDIAAYYQDNAEEYAARETRNLTQLIVPTREGAEALAARVRGGESFAQAASSSG--LRT 312 Query: 310 ISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 L + I ++AD+ FS A +G T S G+ IA V+++ P S E Sbjct: 313 TQLDGRERSDIRSAASQAVADAYFS-ASEGAVTAPARSSLGWHIARVNSVDPQPARSLAE 371 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 V+ I +R K + E +E+ LA G S+ ++ + D P + +G Sbjct: 372 VRDSIVEVLREQKRQRGIAELAVGIEDRLADGASLSSVASELGVELQDTPPLTDSGLIYG 431 Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTD 485 E L F F D+ + AL D +++ ++ + P+ L E+ + Sbjct: 432 TGERVPDMLAPVLEF-AFQIDE--GEPEIGALADQQTFLIYEVADITPSAAAPLAEIRNE 488 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 V +W+ V+ E AN+ VL +EG Sbjct: 489 VTAEWRRVRGNEGAEEAANR-VLRRVEEG 516 >gi|56414392|ref|YP_151467.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363312|ref|YP_002142949.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128649|gb|AAV78155.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094789|emb|CAR60322.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 623 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKSRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQALV--SDADIQAYYDQHLDQFTQPERTRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAAKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|283851044|ref|ZP_06368329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp. FW1012B] gi|283573690|gb|EFC21665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp. FW1012B] Length = 650 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 140/663 (21%), Positives = 270/663 (40%), Gaps = 70/663 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W KI ++ + F+ WG+ F ++ + ++ Q V + ++ Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FQGDKATVLATIDGQPVLIKDYEKAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L ++ K V + + + G ++ N+V+ L+ +G+ + EIA Sbjct: 59 QENLRLVKNKNPNVTDKDL-QDGGFRWQVFSNMVTTRLLEDQAAKLGIAVSPEELRAEIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F + +F + + L + E+ + + L + + +V P+ + Sbjct: 118 KIPAFQNESKQFDAKRYENLLQANDVTPGEFEADFRQNL-LLEKLAAYVS--LPAAVTDT 174 Query: 181 QAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +A+ F E ++ YI P+ + ++E KD + P RI Y+ F Sbjct: 175 EARSIFDFMREQATIHYIPFKTEDFTKGVAPTADQIKAYYEARKDQFATPAQIRIDYVEF 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQS------- 289 K E+++ +++ Y+ N++KY PE +R LV EA + Sbjct: 235 TPKALAKPAEVTDADIETAYKANQKKYAKPEQVRVRHFLVMLPADAPKEAVDAATAKLKD 294 Query: 290 ----LKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 LK G F L + G+ + + GS KE+ + + FSL KK + Sbjct: 295 LAAKLKAGADFASLLPKNPNNPEGLIGEDWAWLPKGSLPKEF---GAFEEKAFSL-KKDE 350 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + G + + + + EVK +I + + KA++K+ + ++E +A Sbjct: 351 IGEPVRTALGLHLIQAGEHQAAGEKTLAEVKDEIRSDLAEQKAADKLTKALDTIQEKVAA 410 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF------GKDDPLS 451 G + + + EK ++ DF KD E+ EQ L +F G D PLS Sbjct: 411 GEDLKKAAAEEK---LETKTTDFFAKDTPPAELG---LSEQALAALFTFKQGGGADQPLS 464 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 DG ++ ++ E+ PA +E V TDV KD AEE +A + Sbjct: 465 TQ------DG-FLLARVAETKPAGFEPMEAV-TDVIKD---RLVAEEAQKRARAQADTVA 513 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVKCFP 564 K + K L A QI++ F G++ V +GP + Sbjct: 514 KAMETEEGKAKVL-ADYKDKIQISQPFTRQGFIPALGMAPVLVQTAFEATGPGWFKAAYA 572 Query: 565 IENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + +G YV+ + +EKD+++S L Q +L + + ++ V + + Sbjct: 573 VSDG--YVLAGLEKRMPAETALWDKEKDRWMSTLAQSKQSELFKAYLQTVQQTAKVEILN 630 Query: 621 NLI 623 + I Sbjct: 631 DAI 633 >gi|157962498|ref|YP_001502532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana ATCC 700345] gi|157847498|gb|ABV87997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana ATCC 700345] Length = 621 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 106/426 (24%), Positives = 196/426 (46%), Gaps = 54/426 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR+ S+ +AK L+++ + F G+S L GSST V +V +++ S+ Sbjct: 1 MLEKIREGSQGVIAKSILILVILSFAFTGVSSYL----GSSTEVAAATVNGEEISNSALE 56 Query: 58 NSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G ++++ + + +L+ LV+ LDQ ++GL + Sbjct: 57 QAYQNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F D F +D + + L + G + D ++R +V VG Sbjct: 117 IKAAIMSEPAFQ-TDGAFDNDRYQAILRQLGYQANSFRDMMRIDMTRRQLVATLVG---- 171 Query: 175 SNLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN----YRA 226 S +L ++ + R +DY V++ P +AD S V + + Y D + Sbjct: 172 SEFVLPSEAKYVADLQGQTRDIDYKVID--ATPFLADIS--VTDEQIKAYYDTNLGQFIR 227 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------- 279 PE ++YI D + K + +++ E QA Y+++K Y E R ++ + Sbjct: 228 PEVVSLNYIELDAKDLAKDVTVTDAEAQAYYDEHKANYTQAEKRLAAHILVQSGDDDAAA 287 Query: 280 QKEADEAFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIF 330 + +A+ ++ L+ G F +LA+ EQG L G E+ D +L F Sbjct: 288 KAKAEAIYKQLQDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEF--DTAL----F 341 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L KG+++ V+ +FGY I +I+ F +VK+ I Q++ +A +K E Sbjct: 342 AL-NKGEYSGVVKTNFGYHIIKALDIQAGAQAPFADVKEKILAQLKDKQAVDKFYE---- 396 Query: 391 LEEFLA 396 L++ LA Sbjct: 397 LQQVLA 402 >gi|300721987|ref|YP_003711267.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC 19061] gi|297628484|emb|CBJ89049.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Xenorhabdus nematophila ATCC 19061] Length = 626 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 173/387 (44%), Gaps = 27/387 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + FL+ G++ L S SGS V Q + + ++ Sbjct: 1 MMDNLRTAANGPVLKIVLALIILTFLLTGVTGYLSSESGS-YAAKVNGQTISRAELEQAF 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 QE ++ +++G + + ++ R + ++ LD L++ ++Q+ +GL A +V Sbjct: 60 LQEKDVLQERLGDQFSALLSDEQQVRQIR--RQSLDRLINTVLIEQYANKLGLSASDDQV 117 Query: 116 WGEIARSPLFH--GK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 EI + GK DNK D +++ LAR I+ + K L ++ + +G Sbjct: 118 AEEIRNTSFLQTDGKFDNKKYQD-YLNMLARSNISPDHFAAQVRKELINRQLMQVLMGSE 176 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + Q + R+V + L + + A ++ L ++ + PE +I Sbjct: 177 IALPTEIKQEVMLILQERTVRFATLELKSLEAQQKVTDEELKNYYSANSKRFTVPEKVKI 236 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D ++ K I +S +++ Y+ N KY +PE + + + A L K Sbjct: 237 SYIKMDAVDELKNITVSEADIEKYYKNNLSKYTTPEQKKYSFIQLVSDSAAKSVLDELNK 296 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKE------YIPDVSLADSIFS--LAKKGDFTPVIHG 344 G F QLA E+ S FS + ++ + SL + + S L +KG + ++ Sbjct: 297 GADFSQLAAEK-------STDKFSAQKGGDLGWMEESSLPNELKSANLTQKGQLSEIVKL 349 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDI 371 S Y I + +IKP ++ +I Sbjct: 350 SNAYAIFRLDDIKPQVIKPLADIHAEI 376 >gi|109899437|ref|YP_662692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas atlantica T6c] gi|109701718|gb|ABG41638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas atlantica T6c] Length = 627 Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 127/612 (20%), Positives = 257/612 (41%), Gaps = 69/612 (11%) Query: 1 MLEIIRKASR-TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE IR+ ++ TW I +V+ + F+ G+ + S S + V + + + Sbjct: 1 MLERIREGTQGTWAMAILGLVI-LSFVFAGVGSYINS-SAETAAAKVNDDTISQADLERA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E G + + G + A S L + +LD L+ L+Q D+GL ++ Sbjct: 59 YQNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLLEQAAIDMGLRVSDAQIK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D KF ++ + + L + G E+ D+ ++R + +G Sbjct: 119 QAIVAMPEFQF-DGKFDNERYTAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLA 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 QA + + R Y+ + + S+ + +++ + + ++Y+ Sbjct: 178 AETTQAYKLQQQTRDARYLTIPAESFKDGINVSDDDVENYYQANITQFDTEQKVSLAYVE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQS 289 V + I +S+DE YE+N + + + E R ++ +++A++ Sbjct: 238 LSVDDLLTDIVVSDDEALQYYEQNIQDFRTQEERRASHILIEFGDDEQGARQQAEDVLSK 297 Query: 290 LKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + G F +LA+E G L S G + D + ++ ++LA GD + Sbjct: 298 INDGGDFAELAKEYSSDTFSAENGGDLDWFSAG------MMDPAFEEATYALANVGDVSS 351 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT- 399 V+ FGY I +++IKP T F +VK+D+ +++ +A E+ R+ E +A T Sbjct: 352 VVESEFGYHIIKLTDIKPEETSPFTDVKEDVIAKLKSERAEEEFYAKQLRMAE-VAFETP 410 Query: 400 -SMDEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++DE++ I +D+ +D V V A + ++L+ +D ++ D Sbjct: 411 DTLDEVA---AIAEVDVNTTVMFSQDSVPAAVNYPNVVAQAFSDELI------NDQVNSD 461 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK------------KDWKT-----VKTA 496 + L D M+V++ R + LEEV ++ K+W +K Sbjct: 462 -VIELGDNHVMFVRVANYEAQRTKALEEVSPEINDILLAEQAQQAAKEWAETLLVDIKAE 520 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 ++VS +E+ ++ R G + +L+T D E+ + ++F+G Sbjct: 521 QDVSESLQAKAVEWQEQEAVARS-GSQISPALVTALFKLTEDKESNA----QVVELFNGD 575 Query: 557 VEMVKCFPIENG 568 V +V+ + +G Sbjct: 576 VGLVQLMKVNDG 587 >gi|16759432|ref|NP_455049.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142796|ref|NP_806138.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160790|ref|ZP_03346500.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425852|ref|ZP_03358602.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646001|ref|ZP_03376054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850134|ref|ZP_03381032.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829271|ref|ZP_06546883.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25320965|pir||AG0558 peptidylprolyl isomerase (EC 5.2.1.8) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501723|emb|CAD08911.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi] gi|29138428|gb|AAO69998.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 623 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 141/650 (21%), Positives = 291/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D YT+ L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|209694402|ref|YP_002262330.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida LFI1238] gi|208008353|emb|CAQ78508.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida LFI1238] Length = 618 Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 169/381 (44%), Gaps = 15/381 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ IR+ S V KI L ++ F+ G+ L V GS + + VG +++ + F Sbjct: 1 MMDRIREGSTGLVVKIILGLIIFSFVFAGVGSYL--VGGSQPLAAKVGEREITRNDFEQV 58 Query: 60 WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + ++G ++ + A K +LD +V+ A LD +++GL ++ Sbjct: 59 YQNERNRMQSQLGEYFSTLLGDPAYVEQFRKSVLDRMVNDALLDNQAQELGLRVSDEQIR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPS 175 I P F KD KF ++F L R G + ++ L R +V S Sbjct: 119 QAILSMPQFQ-KDGKFDEEIFNVSLRRAGFTSDSFAEYLRGDLVRNQLVSALESTEFTLS 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 N + Q + + R + I L+ A + + ++++ K + PE ++SYI Sbjct: 178 NEVKAQGE-LEGQQREIRTITLDTATFAKNAKVTEEEVKEYYDANKQQFVRPEQVKVSYI 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGK 294 + + I+++E+Q Y +N++KY + E R V L+ ++ +A L G+ Sbjct: 237 ELSGESLKAQAPITDEEIQTYYNENQDKYSTQEKREVSHILIKGDEADAQAVLARLDAGE 296 Query: 295 KFIQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F +A+E + + SLG + I D D+ F L GD + ++ +FGY I Sbjct: 297 DFATVAKEDSQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLVNVGDHSGLVKSAFGYHI 355 Query: 351 AHVSNIKPSFTVSFQEVKKDI 371 + I+ T +V DI Sbjct: 356 IQLDAIEAPKTKPLAKVSADI 376 >gi|88798823|ref|ZP_01114406.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp. MED297] gi|88778586|gb|EAR09778.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp. MED297] Length = 610 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/398 (20%), Positives = 182/398 (45%), Gaps = 23/398 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQ---KVPFSSFI 57 ML+ +R ++R K+ + ++ + F ++G ++++ S++G+S +V + +V + + Sbjct: 1 MLDALRNSARGTAGKVIVGLIVITFTLFG-AESIISIAGNSAPATVNGEDISEVEYQRLL 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + +QEL + + G ++ S + +I+++L+S Q + + +A +V Sbjct: 60 SRRQQEL---TSQFGAEAAAQLMNSSFVTDEIIESLISQELQMQLADKLAFDASEDQVVQ 116 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 A P F D +FS D +++ LA G N + ++ + + + F G+ S Sbjct: 117 SFADIPAFQ-IDGEFSQDRYLNVLAANGFNHQSFVAAQKEQAA----LAQFQSGVANSAF 171 Query: 178 LLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++++A Y + RS Y +++ A + S+ L ++E+ ++ + + E ++ Sbjct: 172 VVEKAIDRYANLIAQERSFQYKAFESQNYLAQVEVSDGELRDYYEQNQEQFLSEESVKVR 231 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----NQKEADEAFQS 289 Y+ + ++ ++ E+Q+EY+ +R + ++F NQ EA A Sbjct: 232 YLTISLDSLAEQQSVTEQEIQSEYDSYVASLNEDNVREISHILFADGDDNQAEAQAALTR 291 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSF 346 L +G++F LA E G E IPDV D+ L++ G + + + Sbjct: 292 LNQGEEFADLASELSDDPGSAEFGGSLGELIPDVYVDEFYDAALELSEVGQVSAPVETQY 351 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 G + + + S EV+ ++ +R KA E++ Sbjct: 352 GVHLIRLDALNASDPEPLSEVRDELVADIRERKAQEEL 389 >gi|114563758|ref|YP_751271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella frigidimarina NCIMB 400] gi|114335051|gb|ABI72433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella frigidimarina NCIMB 400] Length = 625 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 92/403 (22%), Positives = 180/403 (44%), Gaps = 36/403 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAK LV++ + F G+S L S +G V V ++ + ++ Sbjct: 1 MLEKIREGSQGIVAKTILVLVILSFAFAGVSSYLGSNTGVPAAV-VNGDEIGANELEQAF 59 Query: 61 KQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E I Q++G + + A G+ + +LD L++ +DQ +GL ++ Sbjct: 60 QNERSRIEQQLGEMFTALAADDSYMNGIKQGVLDRLIADKLIDQAANKLGLRVSDEQIKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F ++ +++ L + G + + ++R ++ VG S Sbjct: 120 AIIEEPAFQ-TDGQFDNERYLAVLRQLGYQTTSFRNMMRVDMTRRQLLNALVG----SEF 174 Query: 178 LLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +LD Q + R + Y+V+++ + ++ +++ Y +PE + Sbjct: 175 VLDGEAKQLAEVQGQTRDIRYLVVDSTPFLSTVSVADEEAQSYYDANISQYMSPEKVSLE 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEA 286 Y+ +V + K E S++E++ YE+NK +Y + E R + ++ +AD Sbjct: 235 YVELNVADMAKSSETSDEEVKTYYEENKAQYQTAEKRLAAHIFVAATDDDSADKAKADAI 294 Query: 287 FQSLKKGKKFI---------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 L G+ F QL+ +QG L G + D + +++F L +K Sbjct: 295 EAKLTAGEDFADVAKADSDDQLSAQQGGKLDWFEQG------VMDPAFDEALFGL-QKDQ 347 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + ++ FGY I + +++ S +F+ VK I Q++ KA Sbjct: 348 VSSIVKSEFGYHIIKLLDLQASQATAFENVKAKIVAQLQEKKA 390 >gi|332992311|gb|AEF02366.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas sp. SN2] Length = 630 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 132/656 (20%), Positives = 274/656 (41%), Gaps = 60/656 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ A + ++ + F+ G+ L S SG++ V +V +++ + Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERGY 59 Query: 61 KQELGMISQKIGFVV----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + + + G + +SE+ S + +LD L++ + Q +++GL ++ Sbjct: 60 QNQRAQMESQFGESIAQLFSSEQYLS-DFRRNVLDRLIAEKLIQQQAQEMGLRVSDAQIR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + P F +F +D F + L + G ++ D+ +++ + Sbjct: 119 ETIVQMPEFQFG-GQFDNDRFQTILRQNGFQVADFRDYLRIQMTQNQLAAALTNSEFALP 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++A + R Y+++++ + + + +++ + E +++Y+ Sbjct: 178 GEAERANALQLQTRDAKYVMIDSASFAESVEVTEDDIAEYYNANITAFDTEEQIKLAYVS 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQS 289 V + + ++ + ++ ++ Y+ N Y E R V ++ + +AD A Sbjct: 238 LTVEDVKSRVSVDDEAVRTYYDNNLSGYGKEEERRVSHILIESGDDADAAKAKTQALLDQ 297 Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 L G F +LAE E G L I+ G + D + +++FSLA GD+T Sbjct: 298 LNDGADFAELAENNSDDTFSAENGGDLDFITPG------MMDDAFDEAVFSLANVGDYTD 351 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V+ FG+ I ++ +K + +F++V+ +I + KA LEEF L + Sbjct: 352 VVETEFGFHIIKLTELKEAQVQAFEDVEAEIRETLLTDKA----------LEEFFELQNT 401 Query: 401 MDEIS-----RREKIV-SIDLPLVD---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 M EI+ E + ++DLP+ + F+ V + P ++ F D+ ++ Sbjct: 402 MAEIAFEVPDTLEDVANAVDLPVQETGLFSRNTVPVN--MSSPALTEVAFSSELIDEGVN 459 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 D + L D + + V++ E +P R + L+EV + K K E S A V+E Sbjct: 460 SD-IIELDDETVVVVRVVEHLPQRTQALDEVRDGIVSTVKAQKAQEAAESWATS-VVESL 517 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571 ++G++ + L L + + ++F+ E K + +S Sbjct: 518 QQGES---VDATLAEKSLNWESAEAVARSGSTLNRSIVDKLFTLSTEAEKRVDVIATVSG 574 Query: 572 VV-----FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 V KV ++ + + L QM + + I L++ VTV +NL Sbjct: 575 DVAIVELVKVNSAPALSAEMSESLKPRLAQMQGQRVYQQFIEALRADADVTVSENL 630 >gi|58698918|ref|ZP_00373781.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534569|gb|EAL58705.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 578 Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 115/536 (21%), Positives = 243/536 (45%), Gaps = 33/536 (6%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + + K+ +V+L + G+ + L V VG++ + + + ++ IS Sbjct: 4 KNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS- 62 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 G + E+ + + D +L+ L+ L ++GL + I + F Sbjct: 63 --GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDK 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-------LLDQA 182 +F + F L + EKEYI K+L MF+ + N + +Q Sbjct: 119 GEFDKNKFHETLNDLHMTEKEYIAKLEKILPAM----MFMTSLFKDNYPVTFGEKIDEQI 174 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 ++ R VD + + V I +P + L +E+ K ++ PEY+ YI + Sbjct: 175 YNSRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYF 234 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301 E +I+IS++E+ E+ + + + R + ++F ++EA+ A ++ ++GK F Q+ E Sbjct: 235 EDQIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVE 290 Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 291 EFGKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQIS 348 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++KKDI + + K+ E+V + ++ + G++++EI + + VD Sbjct: 349 DEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDA 408 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G V L+ +F ++ K + + D + + V+I + +P + + E Sbjct: 409 SGKDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFE 463 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 E + W+ +E + + ++ E++ + + D K G L+ Q++R Sbjct: 464 EGRASAVELWQ----SEFIKERMFKIGQEFAVQLREKTDWEKIQGVELVEDQQMHR 515 >gi|149378497|ref|ZP_01896176.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola DG893] gi|149357219|gb|EDM45762.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola DG893] Length = 608 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 116/544 (21%), Positives = 248/544 (45%), Gaps = 51/544 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--- 58 L+ IR+ ++ +AKI + +L V IWG+ + SG V +V + + F+ Sbjct: 1 LQDIRENAQGTIAKIIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVVQ 60 Query: 59 -SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ L + +++ ++ R + +LD L+ + ED GLE + Sbjct: 61 IESQRRLSEMENPDPSLLDEDQVR-----QDVLDALIQQKVMTLNAEDQGLELSDADIDS 115 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F D F+ D FVS + G+ E+ + K VV G+ S + Sbjct: 116 LITQMPQFQ-VDGTFNRDRFVSAVRNMGMGVAEFRETMRKQY----VVNQIRAGISQSGV 170 Query: 178 LLDQ--AKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 + D+ A+ +N++ ++ V L+ V + ++A + ++++ K+ ++ PE S Sbjct: 171 VTDENVAQLLRIQNQTRNFRVTTLSADAVSDQVEVTDADVEAYYDENKEAFKLPESVDAS 230 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK- 292 YI+ + + IEIS+++L+ YE+ + E R ++ + + A+E ++++ Sbjct: 231 YIVLSLAALAETIEISDEQLRDYYEQRASELMREE-RRASHILIEDGENAEETMATIQER 289 Query: 293 ---GKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 G+ F LAE EQG L F++ + D + D++F+L ++G+ + Sbjct: 290 LAGGESFAALAEEFSVDTVSAEQGGDL------GFAERGVYDPAFEDALFAL-EEGEVSE 342 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + SFG + + +++ + E++ + ++ +A+E+ E L + L + Sbjct: 343 PVSTSFGVHLIKLEDVQKTEAPPLAELEDQLRRELAQREATERFAEVRSELAD---LAYA 399 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 D ++ + + L + + +G G + P+ L R +D L++ L D Sbjct: 400 ADNLAGPAE--ELGLEVREKSGITRNGGDA---PFDHAGLIRQLFSEDVLNEGFNTELID 454 Query: 461 -GSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G M V ++ E A+ + LE+V +++ KT E ++ +A+ ++ + + GK+ Sbjct: 455 VGDNMSVVARVGEYQEAQQQPLEDVAEEIRAALTRQKTREALNERADAIIADL-ESGKDI 513 Query: 518 RDIG 521 ++G Sbjct: 514 EELG 517 >gi|168465546|ref|ZP_02699428.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631887|gb|EDX50407.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 623 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 138/651 (21%), Positives = 288/651 (44%), Gaps = 54/651 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + E + Q++G N +S L +++L+ L+ A LDQ+ ++ L + Sbjct: 59 FNNERNRMQQQLGDRYSELAANEGHMKS--LRQQVLNRLIDEALLDQYSRELKLGISDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I +P F D KF ++ + + + + G+ D Y + L + G+ Sbjct: 117 VKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAG 171 Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 ++ +L D+ + R V V++ + A ++ ++ ++++ K + PE Sbjct: 172 TDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQF 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 R+SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 232 RVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDAL 289 Query: 291 KKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 290 NKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSS 345 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-- 403 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D Sbjct: 346 VGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDTYYALQQKVSDAASNDNES 401 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGS 462 ++ E++ + + +D +E+ P + + + G++ + + DG Sbjct: 402 LAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGD 461 Query: 463 YMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + V++ E P + L EV V K K ++ A +L++E K GK + Sbjct: 462 RAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM- 519 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKV 576 K G S ++R D +SQ S P + + + N + + V+ Sbjct: 520 KAAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAF 572 Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 573 DEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|168237567|ref|ZP_02662625.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737891|ref|YP_002113483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713393|gb|ACF92614.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289587|gb|EDY28950.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 623 Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|92114164|ref|YP_574092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter salexigens DSM 3043] gi|91797254|gb|ABE59393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter salexigens DSM 3043] Length = 602 Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 118/536 (22%), Positives = 245/536 (45%), Gaps = 66/536 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFIN 58 ML+ IR+ S+ WVAK+ + + V F ++G +++L V SGS + +V + P Sbjct: 1 MLQRIREGSQGWVAKMIVGAIIVTFALFG-AESLVGVFTSGSDDIATVNGE--PIKRQAV 57 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + G+ S + V E+ R L +++D +++ LDQ+ E+ G+ ++ Sbjct: 58 ELQVQRGIRSGQ----VPPEQERE--LRAQVIDQMITTELLDQYAEEGGMHLSDAQIDQL 111 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F + FS ++F +RLA G + + + R G+ S + Sbjct: 112 IVSRPEFQDSEGNFSQELFSNRLASAGYTPLSFRRELRRDMKRQ----QLQQGVALSTFV 167 Query: 179 L-DQAKRFY-FENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L +A+R +N++ D Y L + A + + + + ++E ++D Y+ PE +++Y Sbjct: 168 LPGEAERLQALQNQTRDFRYASLTADDLEAPVEVTESDMQAYYEAHQDQYQRPEQVKVAY 227 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKK 292 ++ + + + +++ +L+ Y +E +P R V ++ + +++ DEA +++ Sbjct: 228 VVLNQQDVAQDVDVDEQQLRDAYAAERED--AP--REVAHVMVDYGDERSRDEAMARIEE 283 Query: 293 GKKFIQLAEEQGKSLSDIS---------------LGSFSKEYIPDVSLADSIFSLAKKGD 337 + QLAE G +D++ LG ++ + D + D+ FSL +G Sbjct: 284 AQG--QLAE--GADFADVAAEYSDDATTANKGGNLGVINRGFFGD-AFDDAAFSL-DEGQ 337 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + V+ G + V++I SF E + ++A Q+R+ + + E ++LE+ Sbjct: 338 VSSVVDSGDGLHLIKVTDID---MPSFDEQRDELAEQVRLDNSRDAFNERAQQLED---R 391 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP------YKEQLLFRVFGKDDPLS 451 + D++ + +D+ D+ D + V A P + E +L + D Sbjct: 392 SYAADDLQSVADELGLDVQTSDWVSAD-SAEGVLAEPGMMDAAFSEDVLENGYNSD---- 446 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 + L D +++ + A L+EV V++ + VKT E + ++A +LV Sbjct: 447 ---VIELDDQRRAVLRVVDHREATTLSLDEVSERVREATREVKTREALEARAERLV 499 >gi|262171087|ref|ZP_06038765.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451] gi|261892163|gb|EEY38149.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451] Length = 619 Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 114/519 (21%), Positives = 230/519 (44%), Gaps = 22/519 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL G+V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDGQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F + KF +++ + L R G + ++ K L R ++ G P Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L DQ + R + I L+ S+ + Q+++ + + PE ++SY Sbjct: 179 EVNLQDQ---LVSQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 + + +I I ++ Q Y+++ +KY S E R V ++ ++++A L Sbjct: 236 VELSADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++K + EV + I ++ +A + LE+ LA S D + Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K +S + DF + + ++ A+P Q L K+D L+ + P+ + V++ Sbjct: 413 KAISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLNSEVIEVAPE-HVVVVRV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +ES P L+EV T V + +K ++ N++V Sbjct: 471 EESRPETVLPLQEVKTQVVELLSQLKGEQQALELGNKIV 509 >gi|241761010|ref|ZP_04759099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374629|gb|EER64090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 642 Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 104/494 (21%), Positives = 216/494 (43%), Gaps = 25/494 (5%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 T+ +G++K+ S + +++ + Q+ + S G+ K I ++ ++ + Sbjct: 49 TIAKIGKRKLSASEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSE 107 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + ++ G+ V GEIA P+F G + KF +F + LA++ + + + + R Sbjct: 108 WAKNNGIGVSQKMVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVR 167 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 ++ V G++ N + + R + + + + P+ P + + +++ + Sbjct: 168 RQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSH 227 Query: 221 KDNYRAPEYKRISYILFDVHE-KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + Y PE + I Y L E K +++I++ ++ + +Y + E R + Q++ P+ Sbjct: 228 IERYTLPEQRVIRYALVKPDEVKPTEVQIAD-----YFKSHASEYAATEKRDLSQIILPD 282 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS---LADSIFSLAKKG 336 + A+ + G F+ A+ G S DI LG+ SKE + + A++ FSL G Sbjct: 283 KAAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DG 341 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + V+H G+ I HV I+ + +++ +I Q+ + S+ + R+++ ++ Sbjct: 342 AVSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNIS 401 Query: 397 LGTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDH 454 G +I+ +EK+ V PL A D K + ++ GK+ +P Sbjct: 402 NGNGFSDIAHKEKLEVVQTAPLRRDASDDQIVKSLVTPAFES-------GKNSEPFVATI 454 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 T D Y + I + LE+V V D + + E+ A+ L L+ +K G Sbjct: 455 TA---DKLYALAMVDHVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSG 510 Query: 515 KNFRDIGKNLGASL 528 F + G L Sbjct: 511 VPFAQLAAQAGVKL 524 >gi|62179064|ref|YP_215481.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126697|gb|AAX64400.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 623 Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 291/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK+ + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKSAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|258625370|ref|ZP_05720267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603] gi|258582361|gb|EEW07213.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603] Length = 619 Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 114/519 (21%), Positives = 228/519 (43%), Gaps = 22/519 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F + KF +++ + L R G + ++ K L R ++ G P Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L DQ + R + I L+ S+ + Q+++ + + PE ++SY Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 + + +I I ++ Q Y+++ +KY S E R V ++ ++++A L Sbjct: 236 VELSADALKAEISIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++K + EV + I ++ +A + LE+ LA S D + Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K +S + DF D + ++ A+P Q L K+D L+ + P + V++ Sbjct: 413 KAISAKVEHTDFISAD-QAPDLLAVPAVLQALKSPEVKEDGLNSEVIEVAP-EHVVVVRV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +ES P L+EV T V + +K ++ N++V Sbjct: 471 EESRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIV 509 >gi|260753024|ref|YP_003225917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552387|gb|ACV75333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 642 Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 102/493 (20%), Positives = 215/493 (43%), Gaps = 23/493 (4%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 T+ +G++K+ S + +++ + Q+ + S G+ K I ++ ++ + Sbjct: 49 TIAKIGKRKLSASEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSE 107 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + ++ G+ V GEIA P+F G + KF +F + LA++ + + + + R Sbjct: 108 WAKNNGIGVSQKMVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVR 167 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 ++ V G++ N + + R + + + + P+ P + + +++ + Sbjct: 168 RQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSH 227 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + Y PE + I Y L K +++ + ++ ++ + +Y + E R + Q++ P++ Sbjct: 228 IERYTLPEQRVIRYALV----KPDEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDK 283 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS---LADSIFSLAKKGD 337 A+ + G F+ A+ G S DI LG+ SKE + + A++ FSL G Sbjct: 284 AAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DGA 342 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + V+H G+ I HV I+ + +++ +I Q+ + S+ + R+++ ++ Sbjct: 343 VSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISN 402 Query: 398 GTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHT 455 G +I+ +EK+ V PL A D K + ++ GK+ +P T Sbjct: 403 GNGFSDIAHKEKLEVVQTAPLRRDASDDQIVKSLVTPAFES-------GKNSEPFVATIT 455 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 D Y + I + LE+V V D + + E+ A+ L L+ +K G Sbjct: 456 A---DKLYALAMVDHVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGV 511 Query: 516 NFRDIGKNLGASL 528 F + G L Sbjct: 512 PFAQLAAQAGVKL 524 >gi|283856265|ref|YP_162202.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ZM4] gi|283775260|gb|AAV89091.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ZM4] Length = 642 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 102/493 (20%), Positives = 215/493 (43%), Gaps = 23/493 (4%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 T+ +G++K+ S + +++ + Q+ + S G+ K I ++ ++ + Sbjct: 49 TIAKIGKRKLSASEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSE 107 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + ++ G+ V GEIA P+F G + KF +F + LA++ + + + + R Sbjct: 108 WAKNNGIGVSQKMVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVR 167 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFE-NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 ++ V G++ N + + R + + + + P+ P + + +++ + Sbjct: 168 RQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSH 227 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + Y PE + I Y L K +++ + ++ ++ + +Y + E R + Q++ P++ Sbjct: 228 IERYTLPEQRVIRYALV----KPDEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDK 283 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS---LADSIFSLAKKGD 337 A+ + G F+ A+ G S DI LG+ SKE + + A++ FSL G Sbjct: 284 AAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGTLSKEQYSEKASPEAANAAFSLG-DGA 342 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + V+H G+ I HV I+ + +++ +I Q+ + S+ + R+++ ++ Sbjct: 343 VSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISN 402 Query: 398 GTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHT 455 G +I+ +EK+ V PL A D K + ++ GK+ +P T Sbjct: 403 GNGFSDIAHKEKLEVVQTAPLRRDASDDQIVKSLVTPAFES-------GKNSEPFVATIT 455 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 D Y + I + LE+V V D + + E+ A+ L L+ +K G Sbjct: 456 A---DKLYALAMVDHVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGV 511 Query: 516 NFRDIGKNLGASL 528 F + G L Sbjct: 512 PFAQLAAQAGVKL 524 >gi|254418312|ref|ZP_05032036.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3] gi|196184489|gb|EDX79465.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3] Length = 635 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 137/622 (22%), Positives = 259/622 (41%), Gaps = 50/622 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ R SR+ A LV++ + F+I G +F+ G V+ G + + + F ++ Sbjct: 1 MITAFRAFSRSKWAAALLVLIAISFVIVGARMDVFANLGPKHVIDAGDRSMNEAEFSAAF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + I Q+ G V +E + + + LD+ + G+ + +I Sbjct: 61 GRVRENIQQQAGRPVTNEDLIAENIHTRFLDSQTEQFGFLNWAWKAGIRPGKELIVKQIR 120 Query: 121 RSP-LFHGKDNKFSHDVFVSRLAREGIN----EKEYIDHYTKMLSRTDVVG--MFVGGMR 173 + P F+ +F + S LA++ + E++ D Y T+ G +F G Sbjct: 121 QIPAFFNSVTGQFDQQAYESALAQQNLTPAMLEQDLRDQYA-----TEHFGAAIFAGARA 175 Query: 174 PS--NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 P LL A FE R + + I P++A L + ++ RAPE++ Sbjct: 176 PRIYGALLAGAA---FETRDGRWFEVTPAMAGEIPAPTDAQLNAFIQENAARLRAPEFRM 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +S +LF + +S++ ++ +E K+ PE RT L P++ A + +L+ Sbjct: 233 VSVVLFTPDPGAAPV-VSDERIRERFEFKKDSLGKPETRTFVTLTAPSRDVAQKIAAALR 291 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 G+ + + S+ S + + D + A ++F L PV G G+ +A Sbjct: 292 AGQSPADVG--RANSIQPASFNVTPRAAVGDAATAAAVFGLQVNQVSDPVQAG-VGFAVA 348 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK-EDYKRLEEFLA---LGTSMDEISRR 407 V+ I+P + + ++ I ++R +E VK + Y ++E++ A G ++ + +R Sbjct: 349 KVTAIQPGQPATLENSREQIVAELR----AEDVKGQTYAKVEKYEAARTAGKNLADAARE 404 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD---GSYM 464 IDLP GK G+ + A P +VF L+K + D G Y Sbjct: 405 AGGRVIDLPPFTKDGKLPNGQALNAPP-------QVFETAWSLTKGGESDVIDAGQGQYF 457 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V++ + P+ L EV + W + + +++KA +L ++G++ + +++ Sbjct: 458 AVRVNDIRPSALPTLAEVRAPLAAQWTQREISRRLAAKAEELASRV-RQGQDIAAVARSV 516 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV-----TNS 579 A L + R + G + +F V P E G Y+V +V N Sbjct: 517 NAPLTVRTGVVRDQATQESLGQGVLQGLFGQAKGQVFSQPGEGG--YLVGRVDGVHAANP 574 Query: 580 KV-GPV--QEKDKFISYLTQMM 598 V GP+ Q + + L Q M Sbjct: 575 AVAGPLAEQARPRITQELVQAM 596 >gi|16763833|ref|NP_459448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615353|ref|YP_001589318.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551732|ref|ZP_02345485.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990436|ref|ZP_02571536.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231441|ref|ZP_02656499.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240281|ref|ZP_02665213.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261111|ref|ZP_02683084.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818936|ref|ZP_02830936.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442454|ref|YP_002039695.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448749|ref|YP_002044487.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469679|ref|ZP_03075663.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262652|ref|ZP_03162726.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390757|ref|ZP_03217368.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855932|ref|YP_002242583.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418959|gb|AAL19407.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161364717|gb|ABX68485.1| hypothetical protein SPAB_03124 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401117|gb|ACF61339.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407053|gb|ACF67272.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456043|gb|EDX44882.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197240907|gb|EDY23527.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603202|gb|EDZ01748.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323503|gb|EDZ11342.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330915|gb|EDZ17679.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333949|gb|EDZ20713.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340141|gb|EDZ26905.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344153|gb|EDZ30917.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350111|gb|EDZ36742.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707735|emb|CAR32020.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245735|emb|CBG23532.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992168|gb|ACY87053.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157063|emb|CBW16547.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911485|dbj|BAJ35459.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084726|emb|CBY94517.1| putative protease maturation protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226030|gb|EFX51081.1| Peptidyl-prolyl cis-trans isomerase ppiD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713525|gb|EFZ05096.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128772|gb|ADX16202.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987401|gb|AEF06384.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 623 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|213622668|ref|ZP_03375451.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 599 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 133/626 (21%), Positives = 276/626 (44%), Gaps = 52/626 (8%) Query: 25 FLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV 83 F++ G+S L + GS+ + V Q++ + F N++ E + Q++G SE A + Sbjct: 1 FILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENAFNNERNRMQQQLGDRY-SELAANE 57 Query: 84 G----LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 G L +++L+ L+ A LDQ+ ++ L +V I +P F D KF ++ + + Sbjct: 58 GYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNA 116 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYI 195 + + G+ D YT+ L + G+ ++ +L D+ + R V Sbjct: 117 IVNQMGMT----ADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREA 172 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 V++ + A ++ ++ ++++ K + PE R+SYI D + + S+ ++QA Sbjct: 173 VIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQA 230 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS- 314 Y+++ +++ PE + + +A +L KG+ F LA+E+ + G Sbjct: 231 YYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGD 290 Query: 315 ----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +P++ A L +KG + VI S G+++A + +I+P+ EV+ D Sbjct: 291 MGWLEESATVPELKNA----GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDD 346 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRREKIVSIDLPLVDFAGKDVKGK 428 IA +++ EK + Y L++ ++ S D ++ E++ + + +D + Sbjct: 347 IAAKVK----QEKALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPE 402 Query: 429 EVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDV 486 E+ P + + + G++ + + DG + V++ E P + L EV V Sbjct: 403 ELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQV 462 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546 K K ++ A +L++E K GK + K G S ++R Sbjct: 463 TALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ------- 513 Query: 547 DGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599 D +SQ S P + + + N + + V+ K G P +K + +TQ Sbjct: 514 DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNA 573 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + +++++ L+ + + + D L Q+ Sbjct: 574 QIVFEALMSNLRKEAKIKIGDALEQQ 599 >gi|114330677|ref|YP_746899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] gi|114307691|gb|ABI58934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] Length = 630 Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/391 (21%), Positives = 178/391 (45%), Gaps = 21/391 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + +I L + +PFL WGL ++ + +S V SV +++ + + + + + +G Sbjct: 11 IVQIVLFIALLPFLFWGL-ESYQGMGSASDVASVDGEEISRQEYEQALRNQQENLRNMLG 69 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++ S + +L+NL+ L +GL R+ EI LFH +D+KF Sbjct: 70 ENFDASLLDSPQMRMAVLENLIQQKLLRHEAGRVGLAVLDSRLTAEIQNIALFH-EDDKF 128 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S++ + L R+G++ + L R ++ G + S + D+ + Sbjct: 129 SYERYRELLQRQGMSPAMFEARLAGDLMRQQLLEGITGSVIVSKTVADRIASLSETKYEI 188 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + +N A+P A + +++ ++ ++ PE RI Y++ + E K+ +IS++E Sbjct: 189 NRVTINPEQYINQAEPDEAAIQSYYDSHRQDFTLPERVRIEYVVLSLEELAKQEQISDEE 248 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KFIQL 299 ++ ++++++++ E R ++ +A E ++ K K KF +L Sbjct: 249 IKKYFDEHQDEFGRVEERRASHILLTVPVDATEEQKAAIKAKAEQILEQVKQDPDKFPEL 308 Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A E+ G + + LG F++ + + D+ F + PV FG+ I ++ Sbjct: 309 AKELSEDPGSAKAGGDLGFFARGLMVK-AFEDTAFEMQLDEIRGPV-ETPFGFHIIRLTA 366 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +K + F EVK+ I ++ KA+++ E Sbjct: 367 VKDANVAKFDEVKEGIRQTLQRQKAADRFGE 397 >gi|322614730|gb|EFY11659.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618836|gb|EFY15724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623543|gb|EFY20382.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629158|gb|EFY25937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631879|gb|EFY28633.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637384|gb|EFY34086.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642069|gb|EFY38679.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647888|gb|EFY44363.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322653272|gb|EFY49605.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660579|gb|EFY56815.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664731|gb|EFY60924.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669216|gb|EFY65366.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670761|gb|EFY66894.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679000|gb|EFY75055.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682029|gb|EFY78054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685142|gb|EFY81139.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192964|gb|EFZ78187.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196954|gb|EFZ82096.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203939|gb|EFZ88956.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206976|gb|EFZ91929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214179|gb|EFZ98937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214497|gb|EFZ99248.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219161|gb|EGA03658.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227003|gb|EGA11184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230179|gb|EGA14299.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233917|gb|EGA18006.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238389|gb|EGA22447.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244076|gb|EGA28085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246237|gb|EGA30220.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251863|gb|EGA35726.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257859|gb|EGA41538.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261127|gb|EGA44719.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264943|gb|EGA48442.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272506|gb|EGA55913.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 623 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEEMNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|304413823|ref|ZP_07395240.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus Regiella insecticola LSR1] gi|304283543|gb|EFL91938.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus Regiella insecticola LSR1] Length = 623 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 96/401 (23%), Positives = 187/401 (46%), Gaps = 30/401 (7%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84 +L+ G +D V+G +S + + F S +Q+LG ++ + ++E S Sbjct: 32 YLVGGANDYAAKVNGEK--ISQAKLEQAFQSERARMQQQLG---EQFSTLASNESYMS-K 85 Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L ++ L+ L++ L+Q+ + +GL +V I + P F DNKF + +++ + Sbjct: 86 LRQQTLEQLINNVLLNQYTQKLGLTVSDEQVKESIRQIPYFQ-TDNKFDNTKYLNLINSM 144 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNR 200 G D + ++ + ++ + + S +L + + R V ++ Sbjct: 145 GYKP----DQFAQLQLQQLILQQLLQAVGSSEFILPMEMKKTAELVLQQRDVRLATIDVN 200 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + A +N L ++ + K ++ AP +ISYI D+ E +KKI +S E+++ Y+++ Sbjct: 201 ALQAHQKVTNTELKNYYHQNKKDFIAPAEIKISYIFMDMAEIQKKITVSEKEIESYYQQH 260 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS------LGS 314 K Y PE + + +KEA LK G F LA++ KS+ IS LG Sbjct: 261 KNNYIQPERKHFSVIQLKTEKEAQAILAELKTGADFATLAKQ--KSVDIISRKNGGTLGW 318 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 D L + +L +KG + VI S GY+I +++IKP + +F+EV+ ++ + Sbjct: 319 LEASMTLD-ELKQA--NLTEKGQLSDVIKSSVGYLIVRLNDIKPEQSRAFKEVRTELLKK 375 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 ++ EK + Y L++ ++ + + S V+ DL Sbjct: 376 VQ----QEKTLDAYYALQQQVSTAAANNNDSLASAEVAADL 412 >gi|260912811|ref|ZP_05919297.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC 43325] gi|260633189|gb|EEX51354.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC 43325] Length = 625 Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 177/392 (45%), Gaps = 29/392 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + +WV+K+ L ++ V F++ G++ +F+ + ++V V +++ +F + Sbjct: 2 LIEKLHSITNSWVSKLVLGLIAVAFVLSGITGYVFT-NVDTSVAKVNGEEITQQAFHQRY 60 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E ++Q++G V + L + +L++LV+ L Q+ D+ L R+ Sbjct: 61 ESEFERLNQQLGSQFAAVAGSKGFVSNLRQSVLNSLVNQELLRQYANDLKLAVSDERIKQ 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI S LF D KF ++++ RL G+N Y + + L R D G+ S Sbjct: 121 EIVTSELFQ-TDGKFDNNLYQRRLQLNGMNADMYAAYVGEAL-RLD---QLQSGLAESAF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 + DQ +F+ R + + + A + + +++ K + PE ++ Sbjct: 176 SVPAQQDQLTELFFQTRKLRLAKFDLKDEIAQQQVTEEEIKAYYDANKSAFSVPELAKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + EK I++++ E+ Y+ NK Y S + + + +++A E + +L+ G Sbjct: 236 YIELTRADVEKNIQVTDVEIAQYYQDNKALYVSQGQQRISHIELATEQDAQEVYAALQDG 295 Query: 294 KKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 F LA + G LS +S G K + D + A + G F+ + Sbjct: 296 ANFAGLASARSLDKISAANGGDLSWLSAGGLPKAF-EDAANALEV------GKFSQPVKV 348 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 Y I V++ K + + VK IA+Q+R Sbjct: 349 DSHYHIILVTDRKSAEALPLSVVKTQIADQIR 380 >gi|24373364|ref|NP_717407.1| peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1] gi|24347627|gb|AAN54851.1|AE015624_4 peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1] Length = 621 Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 120/538 (22%), Positives = 233/538 (43%), Gaps = 52/538 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTS-EVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G F S R + + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF ++ + + L + G + + ++R + VG + Sbjct: 120 AIKSEPAFQ-TDGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175 Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L +AK+ + R + Y+V+++ A A ++ + +++ + + +PE + Y Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLAKASVTDEQVKSYYDANQGQFMSPEKVSLEY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------------- 278 + + + K +++++E Q Y+++K +Y S E R ++ Sbjct: 236 VELNAADFAKDSKVTDEEAQTYYDEHKAQYVSNEKRLAAHILIALGSDEAAAKAKAEDLA 295 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 Q + F +L K L+ EQG L G + D + ++F+L +KG Sbjct: 296 KQLDNGADFAALAKANSEDTLSAEQGGKLDWFEPG------VMDPTFDTALFAL-QKGQH 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + V+ FG+ I + +I+P TV F +VK I Q++ KA ++ + L+ LA Sbjct: 349 SGVVKTDFGFHIIKLLDIQPGTTVPFADVKTKIFAQLQEKKAVDQ----FYSLQSKLA-D 403 Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--- 452 TS D ++ K+V +++ +D +V A K ++ F DP+ + Sbjct: 404 TSYEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFS--DPVMRQGL 457 Query: 453 -DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + L + +++KE A L EV D+ + K + E +KA +L+ + Sbjct: 458 NSEVIELEPNHVVVIRMKEHHDAGTMPLAEVKADIAERLKQEQANEAARAKAEELMAQ 515 >gi|320540341|ref|ZP_08039993.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia symbiotica str. Tucson] gi|320029661|gb|EFW11688.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia symbiotica str. Tucson] Length = 628 Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 86/365 (23%), Positives = 168/365 (46%), Gaps = 24/365 (6%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG----MISQKIGFVVNSERA 80 +LI G D V+G V+ + + F S +Q+LG +++ G++ +R Sbjct: 33 YLIGGFGDYAAKVNGQ--VIERAQLEQVFQSERQRMQQQLGDQFSVLAGNEGYM---QRM 87 Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 R +++L L+ L Q+ + +GL ++ I ++P F D +F + ++ Sbjct: 88 R-----QQVLSQLIDNMLLAQYAKKLGLSVSDEQIKNAIRKTPYFQ-TDGQFDNAKYLDL 141 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQA-KRFYFENRSVDYIVL 197 L G ++ + L V F G M P+ QA + R+V + Sbjct: 142 LGSMGYTVDDFAQSMRQQLVNQQVTQAFGESGFMLPAE---SQAMAALLLQQRNVRLATI 198 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 + + A + S+ L ++++ ++++ APE ++SYI D + K+++S+ ++ A Y Sbjct: 199 DLSALQAKQNVSDDELKAYYQQNQNSFIAPEQIKVSYISIDAVSMQDKVKVSDTDISAYY 258 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317 +++K Y PE + + + EA+ LKKG F LA+++ + G Sbjct: 259 DRHKSSYGQPERKNYSVIQLKTETEANAVLSELKKGGDFATLAKDKSTDIISRRTGGELG 318 Query: 318 EYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 P+ + AD + L +KG + V++ S GY+I +++I+P +V + IA Q+ Sbjct: 319 LLEPETT-ADELKQAHLTEKGQLSSVVNSSIGYLIVRLNDIEPEKMKPLSDVHETIAKQV 377 Query: 376 RITKA 380 R KA Sbjct: 378 RREKA 382 >gi|40062782|gb|AAR37676.1| peptidyl-prolyl cis-trans isomerase, putative [uncultured marine bacterium 439] Length = 613 Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 85/373 (22%), Positives = 169/373 (45%), Gaps = 12/373 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK S+ WVA + + ++ VPF ++G+ + + S +S V SV + + + Sbjct: 1 MLGAIRKKSKGWVAYLIVGLITVPFALFGIQEYMGG-SSNSAVASVDGEDISLDYYYQKL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++E + L + ++D+L++ L+ F + L V I Sbjct: 60 NTQQRNLQQQLGASYSAEIDNA--LRQTLIDSLINEKLLENFTNSMKLVTLEEEVRSFIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P+F D FS + ++ L G Y +K +S + S + +D Sbjct: 118 SNPVFQ-VDGVFSEERYIQLLRLNGFTPLAYELEQSKSMSLDQIKRNLNNSAFLSTVQID 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + R V ++VL+ ++++F+ K N+ ++ ++ + Sbjct: 177 QLNDLSAQERDVSFLVLSTEKYKEQIIVDQDQISEYFDNNKSNFIEGHKVQVDFVELSLD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E++ N+ L+ Y +N+E Y + E R + ++ + A + +K+G F +LA Sbjct: 237 NIEQQTNPDNETLRKLYVENEELYTNSEQRRAQHILLEEESNARAILKEIKEGGDFSELA 296 Query: 301 EEQGKSLSDIS----LGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 K ++ LG F +E +P+ A +F + GD + V+ +GY I ++ Sbjct: 297 RIHSKDITTSEEGGDLGLFERELMVPEFDKA--VFDM-DVGDISEVVKTDYGYHIIKLNE 353 Query: 356 IKPSFTVSFQEVK 368 I+PS SF+EV+ Sbjct: 354 IQPSTLQSFEEVE 366 >gi|261210559|ref|ZP_05924852.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341] gi|260840344|gb|EEX66915.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341] Length = 619 Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 115/519 (22%), Positives = 229/519 (44%), Gaps = 22/519 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + K+ L ++ + F+ G+ + L S G++T VG+ ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKVILGLIILSFIFAGVGNYLIS-GGNNTAAKVGKAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F + +F +++ + L R G + ++ K L R ++ G P Sbjct: 120 MILEMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L DQ + R + I L+ S+ + Q+++ + + PE ++SY Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKK 292 + +K+I I ++ Q Y+++ +KY + E R V ++ ++++A L Sbjct: 236 VELSADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E+ G + SLG ++ + D + + F+L + G + ++ FGY Sbjct: 296 GADFATVAKEKSQDVGSAQEGGSLGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + +K + EV + I ++ +A + LE+ LA S D + Sbjct: 355 HIIRLDEVKAPVVKPYSEVVEAIKQELIDQQALDTFYAKQSELEK-LAFEHS-DSLDEAA 412 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K +S + DF + + E+ A P Q+L K+D L+ + P+ + V++ Sbjct: 413 KAISATVEHTDFISAE-QAPELLATPAVLQVLKTPEVKEDGLNSEVIEVAPE-HVVVVRV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +ES P LEEV V + +K ++ NQLV Sbjct: 471 EESRPETVLPLEEVKPQVVEQLSRMKGEQQALELGNQLV 509 >gi|126731274|ref|ZP_01747081.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37] gi|126708185|gb|EBA07244.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37] Length = 615 Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 95/484 (19%), Positives = 211/484 (43%), Gaps = 19/484 (3%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 S++ VG ++P S + + +QE+ + + G ++ ++AR++G+ +L +V+ A L+ Sbjct: 37 SSIGKVGEAEIPASDYFRAMQQEIRAVQTQTGQALSMQQARAMGIPDMVLSRVVTTAALE 96 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 +G+ R+ ++ P F G D F + + L G +E+E+ + + Sbjct: 97 NEAAQLGISVGDERLAQDLREIPAFQGIDGSFDRESYRLALQGAGFSEREFEEQLRAESA 156 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEK 219 T + G+ + + E R+ + L + + + P++ L ++++ Sbjct: 157 STLLQNAIQAGVALPPVYAQTLVSYTGERRAFTWAELGSEQLSTGLPIPTDEELQTFYDE 216 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 D Y P ++I+Y +E+ D L+A Y++ ++ PE R VE+LV+ + Sbjct: 217 NIDRYTRPTTRKITYAWLTPAMIVDTVEVPEDMLRATYDERSSEFNLPERRLVERLVYSS 276 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 ++ A +A + G F L E+G ++D +G ++ + + +++F+ A+ GD Sbjct: 277 EEAAQDAAARVANGDVPFETLVRERGLDIADTDMGDVTEASLG--AAGETVFA-AEVGDV 333 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 G + V+ + + SF+E + + + + +A ++ +L++ LA G Sbjct: 334 VQA-PSDLGPALYRVNAVLAAQDTSFEEAIPQMRDTLALAQARRVIEGLANQLDDELAAG 392 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 ++++++ ++L +D+ G +A D P L Sbjct: 393 ATLEDLA---GDTEMELGQIDWTSASSDG--IAGYEAFNTAAAEAETGDYP----AIAEL 443 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDW----KTVKTAEEVSSKANQLVLEYSKEG 514 DG +++ E A +V V++DW + A++ + ANQL + + Sbjct: 444 GDGGLFALRLDEIQEAAPYPFADVRARVEQDWEADARATALADQAEALANQLSGDTGFDD 503 Query: 515 KNFR 518 N R Sbjct: 504 LNLR 507 >gi|254439696|ref|ZP_05053190.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307] gi|198255142|gb|EDY79456.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307] Length = 619 Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 83/392 (21%), Positives = 168/392 (42%), Gaps = 10/392 (2%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 I L +LFV + +G S +SG+ ++ +VG + + + + ++ + S + G Sbjct: 18 IILGLLFVGLMGFGAS----GLSGNLQSIGAVGDKTLSAQRYFQELQTQIRIGSSQAGRT 73 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 ++ A+S L + L +V+ +LD +GL V ++ F G D F Sbjct: 74 ISFPEAQSAQLPDRALQIVVAERSLDNEAAVLGLSVGDSVVSQQVLGDLNFRGFDGTFDR 133 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + L+R G+N +EY + +R + G+ D +F E R+ + Sbjct: 134 TTYRETLSRNGMNVREYETGLREGAARALLQSAVYAGVPDPATYGDTVAKFVREGRTFTW 193 Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 L + + +PS A L ++ D Y + E + + + + + + DEL Sbjct: 194 APLTATDIEITLPEPSEADLQAHYDANPDIYTSLETRVLRFAWITPAMIQDDMPVDEDEL 253 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISL 312 +AEY+ +++ E R +E+L+F N A A ++ G F QL ++G SL D+ Sbjct: 254 RAEYDDRIDEFVQAERRLIERLIFSNDAAAQTALDAINAGDTTFPQLVADRGLSLEDVDG 313 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G + + D +F+ ++ GD + G + ++ + + +F++ D+ Sbjct: 314 GDVTLAELGDAGA--GVFA-SQTGDVSGPFMTDLGPALFRMNAVLAAQNTTFEDALPDLR 370 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 +A +++ + LA G S+D + Sbjct: 371 EDQSAARARRVIEDQIDPITNLLAGGASLDNL 402 >gi|117921098|ref|YP_870290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. ANA-3] gi|117613430|gb|ABK48884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. ANA-3] Length = 621 Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 120/539 (22%), Positives = 232/539 (43%), Gaps = 54/539 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSKS-DVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G F S R + + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + + ++R + VG + Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVG---TEFV 175 Query: 178 LLDQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L +AK+ + R + Y+V+++ A A ++ + +++ + + +PE + Y Sbjct: 176 LPGEAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN-------------- 279 + + + K +++++E QA Y+++K +Y S E R L+ P Sbjct: 236 VELNAADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLA 295 Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 Q + F L K L+ EQG L G + D S ++F+L +KG Sbjct: 296 KQLDNGADFAELAKANSEDTLSAEQGGKLDWFEPG------VMDPSFDTALFAL-QKGQH 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + V+ FG+ I + +++P TV F +VK I Q++ KA ++ + L+ LA Sbjct: 349 SAVVKTDFGFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQ----FYSLQSKLA-D 403 Query: 399 TSM---DEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPL 450 TS D ++ K+V +++ +D + +V + + +L + + Sbjct: 404 TSYEVPDTLAETAKVVGVEIKATPMFSRDDVPTALNKPDVVKAAFSDTVLRQGLNSE--- 460 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + L + +++KE A L EV D+ + K + E +KA +L+ + Sbjct: 461 ----VIELEPNHVVVIRMKEHHDAGTMPLAEVKADIAERLKQDQANEAARAKAQELMTQ 515 >gi|120599410|ref|YP_963984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. W3-18-1] gi|146292594|ref|YP_001183018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens CN-32] gi|120559503|gb|ABM25430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. W3-18-1] gi|145564284|gb|ABP75219.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens CN-32] gi|319425896|gb|ADV53970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens 200] Length = 618 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 141/659 (21%), Positives = 272/659 (41%), Gaps = 85/659 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV---SVGRQKVPFSSFI 57 MLE IR S+ +AK LV++ + F G+S L GS+T V V K+ + Sbjct: 1 MLEKIRDGSQGVIAKSILVLVILSFAFAGVSSYL----GSTTDVPAAEVNGDKITKAELE 56 Query: 58 NSWKQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q++G F S R + + + +L+ LV+ +DQ +GL + Sbjct: 57 QAYQSERSRMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAASTMGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172 + I P F D KF ++ + + L + G + + + ++R + VG + Sbjct: 117 IITAIKLEPAFQ-TDGKFDNERYQAILRQLGYQPQSFRNMMRVDMTRRQLTAALVGTEFV 175 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 PS Q + R + Y+V+++ A A ++ + +++ + + +PE + Sbjct: 176 LPSEA--KQLAELQGQTRDIRYLVVDSAPFLANATVTDEQVKNYYDANQGQFMSPEQVSL 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEA 286 Y+ + + K ++++E QA Y+++K +Y + E R ++ K AD A Sbjct: 234 EYVELNAADFAKNSPVTDEEAQAYYDEHKTQYLANEKRLAAHILINADQDDAATKAADLA 293 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIH 343 Q L G F +LA+ G + + P V + ++F+L KG+ + V+ Sbjct: 294 KQ-LDNGADFAELAKAHSDDRLSAEQGGKLEWFEPGVMEPTFDAALFAL-NKGEHSAVVK 351 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-- 401 FGY I + +++ TV F +VK I Q+ +D K +++F +L + + Sbjct: 352 TGFGYHIIKLLDVQAGATVPFADVKAKIVAQL----------QDKKAVDQFYSLQSKLAD 401 Query: 402 ------DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KD 453 D ++ K++ + + +D + + K L+ F L Sbjct: 402 TSYEVPDTLAETAKVLGVSIKTTPLFSRDDAPEGL----NKPDLVKAAFSDTVKLKGLNS 457 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + L + +++KE A L EV ++ + K + E +KA +L+ + Sbjct: 458 EVIELEPNHVVVIRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMTQVKAA 517 Query: 514 GKNFRDIGK--------NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565 + + K N+ A+++ K F S S PV V + Sbjct: 518 ATDLGLVSKVKLGRGEQNVDAAIV-----------GKAFQMPTPS---STPV--VDIVGL 561 Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN--------KDLLDSVIAYLKSQYSV 616 NG + + N+ G D+ ++ L Q +N + L+DS+ A K YS Sbjct: 562 ANGYAVIALDKVNAAEGV---SDELVNALKQRLNAQYSEADYRGLIDSLKANAKVVYSA 617 >gi|198244647|ref|YP_002214406.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939163|gb|ACH76496.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 623 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 289/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q + + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQGISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|82703453|ref|YP_413019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] gi|82411518|gb|ABB75627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] Length = 626 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 129/650 (19%), Positives = 269/650 (41%), Gaps = 49/650 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + + K R + +I L + +PF+ WG+ + +G ++ G +K+ F + Sbjct: 1 MFDFVNKKRR--IVQIILGLATLPFVFWGVESYRNADAGDHVALAAG-EKISRQEFEQAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G + + IL+ L+ L Q +GL ++ I Sbjct: 58 RNQQENMRATLGENFSPALLEKPEVRAAILEGLIQQRLLRQEASRVGLGVADAQLIEMIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 LF +D FS + L +G+N + + + L R +V F S+ + + Sbjct: 118 NIDLFQ-EDGNFSKQRYEEWLRNQGMNARAFEARLRQDLMRQQLVDPFSKNAFISHSVAE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R E R V + + A P N + ++E +K ++ PE R+ Y++ + Sbjct: 177 RILRLGDEKREVRVVQIQPEQFLANVKPGNDAIRAYYEAHKAEFQVPEQARVEYVVLSMD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAFQSL 290 +K +++ DE A YE++K ++ PE R ++ + +A+E + Sbjct: 237 ALAEKAQVTADEALAYYEEHKHEFGQPEERRASHILISAPASASDRATARAKAEELLAEV 296 Query: 291 KKG-KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K ++F +LA++ G + + LG F++ + S D++F + K G+ + ++ Sbjct: 297 RKSPQRFTELAKQHSQDPGSAPTGGDLGFFARNMMTK-SFEDAVFRM-KPGEISDIVETE 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSMDEI 404 G+ I ++ + S +EVKK + ++R KA++ E + S+ + Sbjct: 355 HGFHIILLAEARGGKQASLEEVKKQVEQEVRKQKAAKTFGEMADSFSNMVYEQSDSLKPV 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPY--KEQLLFRVFGKDDPLSKDHTVALPDGS 462 + S+ L + + + E PY +LL +F +D K +T A+ S Sbjct: 415 AE-----SLGLTIQESGWIRMNSDEP---PYLNNARLLQAIFSEDAIKDKRNTEAIEVSS 466 Query: 463 YMWVQIK--ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 V + + PA ++E+ +D A E +S+A + KE Sbjct: 467 NTLVSARVVDYKPAATPSVDEL-----RDKIAALVAREEASRA---AINEGKEQLAQLQQ 518 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYV-VFK 575 GK Q++R E + F + + +F + + + G + + V + Sbjct: 519 GKTAPIKWTPGQQVSR--RERQGFDNETVQAIFRAETNHLPAYSGLPNAQGGFTLIRVDR 576 Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 V S+ +E+ F L+Q+ ++ S + +K +Y V+V +++ Sbjct: 577 VIESRPPSAEERKTFAGQLSQLFAQEEFSSYLDGIKKRYDVSVRSESLEK 626 >gi|15603844|ref|NP_246918.1| hypothetical protein PM1979 [Pasteurella multocida subsp. multocida str. Pm70] gi|12722418|gb|AAK04063.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 626 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 119/528 (22%), Positives = 230/528 (43%), Gaps = 47/528 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + +WV+K L ++ V F++ G++ +F+ +S V + +++ +F + Sbjct: 2 LIEKLHGMTNSWVSKFLLGLIAVAFVLSGITGYVFTRVDTSAV-KINGEEISQQTFYQRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G F S V GL + +L+NL++ L Q+ +++ + RV Sbjct: 61 ESESERLRQQLGAQFAALSGSPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVKQ 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI S F ++ KF + ++ L G+ D Y ++ + G+ S Sbjct: 121 EIVTSQFFQ-QEGKFDNALYQRMLQLNGLTP----DAYANIVREGLRLEQLQTGLAESEF 175 Query: 178 LLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ Q +F+ R+V + V S+ ++ ++E K + PE ++ Sbjct: 176 IVPAQQAQLTELFFQARTVRLAPFSLDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 Y+ + EK I++S+ E+ Y+ NK Y S + + + + EA E +Q+L+ G Sbjct: 236 YMTLTRADVEKHIQVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDG 295 Query: 294 KKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 F LA E G LS S G+F K + + + + G F+ + Sbjct: 296 ANFAGLASARSLDKISAENGGDLSWASAGTFPKAF-------EEAANALQVGQFSQPVKV 348 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT--SMD 402 + I V+ K T+ + VK IA+Q+R V Y +E+ LA + Sbjct: 349 DDQFHIILVTERKEPSTLPLEVVKTQIADQIR----QNLVNNQYFSIEKQLAEKAFEHPE 404 Query: 403 EISRREKIVSIDLPLVDF-AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-- 459 + + ++ + + DF + DV AA+ Y ++ +F D +S+ + P Sbjct: 405 GLEKAAEVAGLTIQETDFFSANDVP----AALNYPN-VISAIFHSD--ISQGGVNSEPMN 457 Query: 460 --DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + V++ + P R LEE D+ K K E V ++ANQ Sbjct: 458 VGEQHAVLVRVIANKPEGTRSLEEAKADIISYLKRQKAEEIVLAEANQ 505 >gi|117925439|ref|YP_866056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp. MC-1] gi|117609195|gb|ABK44650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp. MC-1] Length = 636 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 97/431 (22%), Positives = 188/431 (43%), Gaps = 39/431 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++RK++ +WV KI L+++ V F +WG+ + L + + V++V +W Sbjct: 1 MLNVMRKSANSWVIKILLILIAVSFSVWGI-EGLRNAGRDTPVLTV-----------ENW 48 Query: 61 KQELGMISQKIGFVVNSERAR--SVGLDKKILDNLVSGATLDQFIED---------IGLE 109 G I Q + ++ R ++ LD ++ + L + +++ +GL Sbjct: 49 SASQGYIRQSFDRFLREQKQRLGNLPLDNPMIRQQLRQQFLQRMVDEQLMLHSAMQMGLT 108 Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 + IA P F K KF ++ L + ++ K + +R + Sbjct: 109 LSPKGLQKTIAEDPTFQLK-GKFDDALYRQLLRQNRLDPKTFEQDTLVRHARAHLAQGLT 167 Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 LLLD A + E R V ++L+ + ++ DP + L + E +D Y + Sbjct: 168 QVATTPTLLLDDALKQESEKRRVALLMLDQATLASVDDPGDEALRAYQENNRDAYSIKQR 227 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-----------FP 278 ++ Y+L D ++++ ++ A Y+ NK Y + E R + ++ Sbjct: 228 VKVRYLLLDAESVRDELKVDEAKIIAYYDDNKPLYKTLESRKLRHILAKFKAGDATAKAA 287 Query: 279 NQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 QK+ ++A Q + G+ F ++A+ E + LG F + ++ F+L + Sbjct: 288 AQKKIEDAKQRIANGESFAEVAKLLSEDVTASQGGELGVFQRGGGLVERFEEAAFTLP-E 346 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + V+ FG+ + V +I P+ T SF++VK +IA Q+ A E + LE+ L Sbjct: 347 GKVSEVVESPFGFHLILVDHIDPAGTRSFEQVKPEIAEQLFQEGAGEAIYSKSIALEDML 406 Query: 396 ALGTSMDEISR 406 A S+ I + Sbjct: 407 ATADSLATIGK 417 >gi|157804205|ref|YP_001492754.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str. McKiel] gi|157785468|gb|ABV73969.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str. McKiel] Length = 524 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/388 (21%), Positives = 174/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ RK + +++ +I ++ F+ +G+ D L G V + + + F+ + Sbjct: 1 MLDNFRKTADSFIMRILFAMIAFAFIGFGIQDVLNGRRGGDVVTFSHAKNISQADFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D ++L LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTNLTDEEIAQLNIDNRVLKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F K F +F + ++E++Y+ ++ + + VG F + D Sbjct: 121 ESPVFKNKQGVFDIKIFKTYFRNSYMDEEKYLSNFKEKALKNIFVGTFAESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + ++ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPQDLQIPTPTDQQLKDFYQDNKTLFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ + TV++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGNQSFETVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D + ADSIF L++ P+ G Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYA-ELIEDKIIAENADSIFELSEGELSYPIEAG 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P F +K+ + Sbjct: 358 DKSYLILVELKSIQPVKIPEFDSIKEQV 385 >gi|197248545|ref|YP_002145433.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212248|gb|ACH49645.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 623 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 289/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|251790644|ref|YP_003005365.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya zeae Ech1591] gi|247539265|gb|ACT07886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae Ech1591] Length = 626 Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 113/527 (21%), Positives = 232/527 (44%), Gaps = 38/527 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ S Sbjct: 1 MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSGD-YAAKVNGQEITRSQLEQGV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + + L ++L LV + Q+ ++GL +V Sbjct: 60 QNERSRQQEMLGDNFSALAANEGYMQQLRGQVLSQLVDETLVVQYAHNLGLNISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ ++S++ + G+ D Y + L + + + G+ ++ Sbjct: 120 AIFSVPEFQ-TNNRFDNEKYLSQVRQLGLTP----DAYAQFLRKQLLTQQLIRGLGNTDF 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQ---------WFEKYKDNYRAP 227 +L Q E ++ I +R V A D V +Q ++++ K Y AP Sbjct: 175 VLQQ------ELDNLVAIAAQDRTVRTATIDLGARVKSQAVSDEEVKNFYDQNKARYLAP 228 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E ++SYI+ D K ++ +++ A YE++K ++ PE + + + +A Sbjct: 229 EQFKVSYIMLDAASIMDKTKVDGNDIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAVL 288 Query: 288 QSLKKGKKFIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHG 344 + LKKG F LA+++ + S + G ++ D S D I L +KG + V+ Sbjct: 289 EQLKKGADFAALAKDKSTDIVSRRNGGDLG--WMDDGSTVDEIKQAGLKQKGQVSDVVKS 346 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-- 402 S GY+I + +++ EV+ D++ +++ EK + + L++ L+ S D Sbjct: 347 SVGYLIIRLDDVQAQHVKELDEVRADLSEKVK----REKALDAFYSLQQKLSEAASNDNE 402 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDG 461 ++ EK+ +I D+ +D + P + +L + G++ + V +G Sbjct: 403 SLASVEKVANIKSVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEG 462 Query: 462 SYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +V ++ E P + L++V V + K K ++ +A +++ Sbjct: 463 DRAFVLRVTEHKPETTQPLDQVREQVVQSLKRQKAEQQAKVEAEKIL 509 >gi|205351763|ref|YP_002225564.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271544|emb|CAR36362.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626798|gb|EGE33141.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 623 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 290/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNLLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + +D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|51473990|ref|YP_067747.1| hypothetical protein RT0810 [Rickettsia typhi str. Wilmington] gi|51460302|gb|AAU04265.1| rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 526 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/403 (22%), Positives = 182/403 (45%), Gaps = 25/403 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK S +++ ++ ++ F+ +G+ D L + V+ + + F+ + Sbjct: 1 MLDNIRKTSDSFIMRVLFAMIAFAFVGFGIKDILNVRRNNDIVIFSHARNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++IG + E + +D +IL +L+ LD + L+ + + Sbjct: 61 SLEINAISKQIGKSLTDEEIIQLNIDNRILKSLIYNNILDYLVSYYDLDLGDDTIKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F F +F + I E +Y+ ++ + + + +V FV + D Sbjct: 121 ESPIFKNAQGVFDIKIFKTYFRNAYIGEDKYLLNFKEQVLKNIIVSTFVKSFYVPKSMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + L+ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAERREVELLQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287 ++ K+ KI I+ DEL A Y +NK+++ V+ + N + A++ Sbjct: 241 NI--KDLKISITQDELLAFYNENKDEFGDQSFEAVQTQLHDLFRAKKFDILNMEFANKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-------ADSIFSLAKKGDFTP 340 + G ++++E+ + +++ S++ E I D + ADSIF LA+ P Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYLSYA-ELIEDNIIADNIAENADSIFELAEGELSYP 357 Query: 341 VIHGSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + G Y ++ + +I+P+ F + KD N++ I + E Sbjct: 358 IEAGDKSYLLLVELKSIQPAKIPKFDAI-KDQVNEVWIKRNIE 399 >gi|91204986|ref|YP_537341.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii RML369-C] gi|91068530|gb|ABE04252.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii RML369-C] Length = 519 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/388 (21%), Positives = 169/388 (43%), Gaps = 18/388 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK + +++ ++ ++ F+ +G+ D L G V + + F+ + Sbjct: 1 MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS+++G + E + +D +IL LV LD + + V + Sbjct: 61 SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F F +F + +E++Y+ ++ + + G F+ + D Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + +N ++ P I PS+ L +++ K ++ PE + SYI Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287 +KKI+++ +EL Y +NKE++ V++ + N + A Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344 + G +++AE+ +++I+ S++ + I D + ADSIF L++ P+ Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359 Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDI 371 Y V+ + +I P+ F +K+ I Sbjct: 360 DKSYLVLVELKSINPAKIPEFDSIKEQI 387 >gi|218515978|ref|ZP_03512818.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli 8C-3] Length = 212 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 19/217 (8%) Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGS--YMWVQIKESI 472 D G D GKEV IP K+QLL F G D P LP G+ Y+W ++E Sbjct: 1 DATGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-------PLPIGNDGYVWFNVREVT 53 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P RDR + EV +DW + E++ KA++L E K G DI LG ++ + + Sbjct: 54 PDRDRPIAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKS 112 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KD 588 I R ++ G G+ FSGPV+ V + + ++ KVT P + +D Sbjct: 113 GITRS-TDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRD 171 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ + D+LD ++ L++QY V+ L ++ Sbjct: 172 AQLTAMANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 208 >gi|292490923|ref|YP_003526362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] gi|291579518|gb|ADE13975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] Length = 637 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/416 (20%), Positives = 185/416 (44%), Gaps = 34/416 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFI 57 MLE IR ++ A + + ++ +PF +WG+++ F G + SV +++ F + Sbjct: 1 MLEAIRSRAQGIFAWVIVGLITIPFALWGINN-YFREGGEALAASVNGEEITTREFRAAF 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q+L + ++ GF + E +++L+ L+ + ++GL + Sbjct: 60 QRYTQQLRFLMRE-GF--SEEMLDDPATKQRVLEGLIEQRLVLDAAGELGLGMSDSELSK 116 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY-----IDHYTKMLSRTDVVGMFVGGM 172 I + F + +F + S L +G+ Y + ++ L+ T + F Sbjct: 117 VIHNNEAFQDETGQFDFQRYESVLNSQGLTTAAYEARLRLSLLSEQLASTLHLSAFA--- 173 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + ++ R + R + Y ++ + S+ L Q++E++ D +R PE + Sbjct: 174 --TQQEMEDIARLRHQEREIGYGIVPSSKFRDAIQISDEELRQYYEEHPDEFRTPERVAV 231 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQ 280 Y+ I + L+ Y ++K+++ +PE R ++ + Sbjct: 232 DYLRLTAKSLATDIPVDEQTLRDLYAESKDQFGTPEQRRASHILVQVPQGGDDAARQAAR 291 Query: 281 KEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++A+EA + L++G+ F ++A E+ G + LG F + + D + ++ FSL K G Sbjct: 292 EKAEEALRRLQQGEPFEEVAKEVSEDPGSAQQGGDLGFFGRGVM-DPAFEEAAFSLEKVG 350 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 D + + FGY I ++ I+ SF+EV++++A + R A E E + L+ Sbjct: 351 DLSEPVLSKFGYHIIQLTGIQRGEAPSFEEVREELAQKYRQQLAEEHFYEQAETLD 406 >gi|270263574|ref|ZP_06191843.1| putative protease maturation protein [Serratia odorifera 4Rx13] gi|270042458|gb|EFA15553.1| putative protease maturation protein [Serratia odorifera 4Rx13] Length = 627 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 8/297 (2%) Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 + L L+ LDQ+ + +GL +V I ++P F + +F + ++ ++R G Sbjct: 89 QALSQLIDNMLLDQYAKKLGLSVSDDQVKDAIRKAPYFQ-TNGQFDNAKYLDLISRMGYT 147 Query: 148 EKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 + + L V+ F G + PS A + R+V L+ + + A Sbjct: 148 ADNFAQSMRQQLVNQQVIQAFGQSGFVLPSESQGMAA--LVLQERNVRLATLDLKALQAK 205 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 ++ L ++ + K+++ APE ++SYI D + K+ +++ ++ A Y+++K Y Sbjct: 206 QTVTDDELKDYYSQNKNSFIAPEQVKVSYIPLDAASMQDKVTVADADISAYYDQHKSSYG 265 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 PE + + + EA+ LKKG F LA+E+ + G P+ + Sbjct: 266 QPERKNYSVIQLKTEAEANAVLDELKKGGDFATLAKEKSTDIISRRTGGELGWLEPETT- 324 Query: 326 ADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 AD + +L +KG + V+ S GY++ +++I P EV+ DIA Q++ KA Sbjct: 325 ADELKQANLTEKGQLSGVVKSSVGYLVVRLNDIAPEKVKPLSEVRDDIAKQVKQEKA 381 >gi|145298875|ref|YP_001141716.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851647|gb|ABO89968.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp. salmonicida A449] Length = 637 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 115/577 (19%), Positives = 243/577 (42%), Gaps = 39/577 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ VAK+ L ++ + F + G+ L + + +V + ++ N++ Sbjct: 2 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYL-NGPARTAPATVNGNDISSAALENAY 60 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + ++G N + + + +LD L+ A D ++GL ++ Sbjct: 61 RNERARMESQMGESFSQLAANPDYMKQ--FRRGVLDRLIDQALFDSKARELGLRVSDEQI 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P F +D KF++D ++ + R G+ + + D + + R ++G +G Sbjct: 119 KQAIIAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFAL 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +Q + Y + R + + L S+ + Q+++ + E ++ Y+ Sbjct: 178 KGEAEQLDKLYNQTRDLRLVRLAAAAYLGDVQVSDQEVEQYYKTNSARFMNDEKVKVDYL 237 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQ 288 L D K I+++ + + Y+++++ + E R V ++ P +K A E Sbjct: 238 LLDAANLGKDIKVTEQDAKDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEKLAGELLT 297 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K G F LA+ G F K + D + + F+L K GD + ++ Sbjct: 298 KAKGGDDFAALAKANSSDTFSAKKGGELDWFEKGVM-DPAFEQAAFALNKAGDLSNLVKS 356 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ + T F +V + +++ KA E + +++ + + + D + Sbjct: 357 PFGFHVIKLLGVEAAQTKPFVDVMGETIRRLQADKAKELFFAEQQKMAD--SSFENQDSL 414 Query: 405 SRREKIVSIDLPLVDF-----AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + + + VDF A + + +V ++ + EQL +DD + D + L Sbjct: 415 DLTADTMGLKVQSVDFFSQADAPEPLNDPKVLSVAFSEQL------RDDNTNSD-VIELA 467 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 DG + + I P + L E+ V K K +E KA Q +L+ K G+N + Sbjct: 468 DGKALVLHITGYQPKAAKPLAEIKEQVIAAIKYDKASEVARGKA-QGLLDKLKAGENIQA 526 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 LG + T + R + + ++QVF P Sbjct: 527 DLTALGLKMETHKGVARFAQD---MDQNLVAQVFRMP 560 >gi|258621306|ref|ZP_05716340.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573] gi|258586694|gb|EEW11409.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573] Length = 619 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 112/519 (21%), Positives = 228/519 (43%), Gaps = 22/519 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F + KF +++ + L R G + ++ K L R ++ G P Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L DQ + R + + L+ S+ + Q+++ + + PE ++SY Sbjct: 179 EVNLQDQ---LISQTRDIRTLTLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 + + +I I ++ Q Y+++ +KY S E R V ++ ++++A L Sbjct: 236 VELSADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++K + EV + I ++ +A + LE+ LA S D + Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K +S + DF + + ++ A+P Q L K+D L+ + P + V++ Sbjct: 413 KAISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLNSEVIEVAP-EHVVVVRV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +ES P L+EV T V + +K ++ N++V Sbjct: 471 EESRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIV 509 >gi|157827683|ref|YP_001496747.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU 85-389] gi|157802987|gb|ABV79710.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU 85-389] Length = 519 Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/388 (21%), Positives = 169/388 (43%), Gaps = 18/388 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK + +++ ++ ++ F+ +G+ D L G V + + F+ + Sbjct: 1 MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS+++G + E + +D +IL LV LD + + V + Sbjct: 61 SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F F +F + +E++Y+ ++ + + G F+ + D Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + +N ++ P I PS+ L +++ K ++ PE + SYI Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287 +KKI+++ +EL Y +NKE++ V++ + N + A Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344 + G +++AE+ +++I+ S++ + I D + ADSIF L++ P+ Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359 Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDI 371 Y V+ + +I P+ F +K+ I Sbjct: 360 DKSYLVLVELKSINPAKIPEFDIIKEQI 387 >gi|157369342|ref|YP_001477331.1| peptidyl-prolyl cis-trans isomerase D [Serratia proteamaculans 568] gi|157321106|gb|ABV40203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia proteamaculans 568] Length = 627 Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 114/550 (20%), Positives = 235/550 (42%), Gaps = 39/550 (7%) Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 + L L+ LDQ+ + +GL +V I ++P F + +F + ++ ++R G Sbjct: 89 QALSQLIDNMLLDQYAKKLGLSVSDDQVKEAIRKAPYFQ-TNGQFDNAKYLDLISRMGYT 147 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNRHVP 203 + + L V+ F G S +L + + R V L+ + + Sbjct: 148 ADNFAQSMRQQLVNQQVIQAFGG----SGFILPAEAQDMTALVLQQRDVRLATLDLKALQ 203 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 A ++ L ++ + K+++ APE ++SYI D + K+ +++ ++ A Y+++K Sbjct: 204 AKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPMDAAAMQDKVTVADADISAYYDQHKSS 263 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 Y PE + + + EA+ LKKG F LA+++ + G PD Sbjct: 264 YGQPERKNYSVIQLKTEAEANAVLDELKKGGDFATLAKDKSTDIISRRTGGELGWLEPDT 323 Query: 324 SLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + AD + +L +KG + V+ S GY++ +++I P EV+ IA Q++ Sbjct: 324 T-ADELKQANLTEKGQLSGVVKSSVGYLVIRLNDIAPEKVKPLSEVRDAIAKQVK----Q 378 Query: 382 EKVKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-- 437 EK + Y L++ ++ + D ++ E+ + D+ +D AA+ +K Sbjct: 379 EKAVDAYYALQQKVSEAATSDNESLASAEEAAGVKAAQTDWFTRD---NIPAALNFKPVI 435 Query: 438 QLLF--RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVK 494 Q +F + G+ + V DG +V ++ P ++V V + K K Sbjct: 436 QSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGHKPEGIEPFDQVKDRVAELVKRNK 495 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 +E + +L++E K+GK + K G S + ++ R +++ + VF+ Sbjct: 496 AEQEAKLQGEKLLVEL-KQGKGDEAM-KAAGLSFGSVQKMARAPEDSQL-----VQSVFA 548 Query: 555 --GPVEMVKCFPI----ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 P E + + ++ + + P +E F+S + + DS++A Sbjct: 549 LPHPQEGKPVYGMSQDRQDNVVLIALDAVKPGTLPAEEMKTFVSKMEEGATGVSFDSLLA 608 Query: 609 YLKSQYSVTV 618 L+ + +T+ Sbjct: 609 SLRKEAKITM 618 >gi|262404271|ref|ZP_06080826.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586] gi|262349303|gb|EEY98441.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586] Length = 619 Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 109/519 (21%), Positives = 226/519 (43%), Gaps = 22/519 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQSQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F + +F +++ + L R G + ++ K L R ++ G P Sbjct: 120 MILDMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L DQ + R + I L+ S+ + Q+++ + + PE ++SY Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKK 292 + +K+I I ++ Q Y+++ +KY + E R V ++ ++++A L Sbjct: 236 VELSADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E+ G + +LG ++ + D + + F+L + G + ++ FGY Sbjct: 296 GADFATVAKEKSQDVGSAQEGGALGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + +K + EV K + ++ +A + LE+ LA S D + Sbjct: 355 HIIRLDEVKAPVVKPYTEVAKAVKQELVDQQALDAFYTKQSELEK-LAFEHS-DSLDEAA 412 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K +S + DF + + ++ A P Q L K+D L+ + P+ + V++ Sbjct: 413 KAISTQVEHTDFISAE-QAPDLLANPAVLQALKSPEVKEDGLNSEVIEVAPE-HVVVVRM 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +ES P L +V + V + +K ++ N++V Sbjct: 471 EESRPETVLPLADVKSQVVEQLSRMKGEQQALELGNKIV 509 >gi|239908536|ref|YP_002955278.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1] gi|239798403|dbj|BAH77392.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1] Length = 650 Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 92/434 (21%), Positives = 196/434 (45%), Gaps = 33/434 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W KI ++ + F+ WG+ + F+ ++ + +V Q + + + Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIIIVFVFWGVGN--FNGDRATVLATVNGQPILIKDYEKQY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L ++ K V + + + G ++ N+V+ L+ + +G+ G + EIA Sbjct: 59 QENLRLVKNKNPNVTDKD-LQDGGFRWQVFTNMVTTKLLEDQAKTLGIAVTAGELRSEIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F + +F + + L ++ E+ + + L + + FVG P+ + Sbjct: 118 KIPAFQNESKQFDAKRYENLLKANDVSPGEFEADFRQQL-LLEKLAAFVG--LPAQVAEA 174 Query: 181 QAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +A+ F E + YI S+ + +++E KD + P +I ++ F Sbjct: 175 EARSIFDFMREQAIIKYIPFAATDFTKGVTISDEQIAKYYEARKDEFATPAQVKIDFVEF 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPN--QKEADEAFQSLK- 291 K EI++ +++A+++ N++KY PE +R + ++ P+ Q+ D A + LK Sbjct: 235 TPKAMAKPAEITDTDIEADFKANQKKYERPEQVRVRHILMMLPPDAPQEVVDAAEKRLKA 294 Query: 292 ------KGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 KGK F L + G+ + + GS KE+ P + F+L KK + Sbjct: 295 MADDVRKGKDFATLIPKDPANADGIIGEDWAWLPKGSLPKEFAP---FEEKAFTL-KKDE 350 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + S G + + S + EVK +I + +A++K+ + ++E L+ Sbjct: 351 VSDPVRTSLGLHLIQGGEKQASGQRALAEVKDEIRADLAEQRAADKLTKSLDAIQEKLSS 410 Query: 398 GTSMDEISRREKIV 411 G ++ EK+ Sbjct: 411 GEPLEAAVAAEKLA 424 >gi|238783605|ref|ZP_04627626.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC 43970] gi|238715483|gb|EEQ07474.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC 43970] Length = 607 Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 176/377 (46%), Gaps = 32/377 (8%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG---F 73 F++ +LI G +D V+G Q++ + + + E G + Q++G Sbjct: 4 FILTGVGSYLIGGSNDFAAKVNG---------QEISRAQLEQAVQSERGRLQQQLGEQFS 54 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + L +++L LV+ LDQ+ + +GL A +V I ++P F DNKF Sbjct: 55 ALAANEGYMQQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDAIRQAPYFQ-TDNKFD 113 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRP------SNLLLDQAKRF 185 ++ ++ + R G ++ + L ++ F G + P S L+L Q Sbjct: 114 NNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEAQAMSELILQQ---- 169 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 R V ++ + + A ++ L ++++ K+++ APE +IS+I D + K Sbjct: 170 ----REVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKISFIAMDAAAMQDK 225 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 I ++ +++ A Y+++K Y PE R + F N+ EA A + LKKG F +A+E+ Sbjct: 226 ITVTEEDIAAYYDQHKSSYTQPERRNYSVIQFKNEAEAKAALEELKKGADFAAMAKEKST 285 Query: 306 SLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G P+ + AD + L++KG + V+ S GY+I +++IKP Sbjct: 286 DIISRKNGGDLGWLEPETT-ADELKQAKLSEKGQLSDVVKSSVGYLIVRLNDIKPEQVKP 344 Query: 364 FQEVKKDIANQMRITKA 380 EV +A Q++ KA Sbjct: 345 LSEVHDALAKQVKQEKA 361 >gi|229515304|ref|ZP_04404764.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21] gi|229348009|gb|EEO12968.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21] Length = 619 Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 107/515 (20%), Positives = 218/515 (42%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + ++ Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDEAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|238911417|ref|ZP_04655254.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 623 Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 140/650 (21%), Positives = 289/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQLVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +I+P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGLNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L EV V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|254286721|ref|ZP_04961675.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226] gi|150423148|gb|EDN15095.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226] Length = 619 Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 108/515 (20%), Positives = 217/515 (42%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + K+ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAKVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|114569954|ref|YP_756634.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10] gi|114340416|gb|ABI65696.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10] Length = 645 Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 111/529 (20%), Positives = 233/529 (44%), Gaps = 47/529 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML R +++ +A I +V+L + F I + +F+ SG + VV VG +++ + Sbjct: 1 MLSNFRAFAQSPIALIIIVLLVLSFAIAMPGAGGIFTGSGDAVVV-VGPERISQREMATA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + +E+ + Q+ V E AR G+ ++L ++ AT+ D+GL + E+ Sbjct: 60 FNREVARL-QEQNPDVTREMAREEGIAYQVLQQQITMATMAARARDLGLAISDVAIVSEV 118 Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNL 177 A P F +F D + L R G+ E ++ L R+ ++ G P + Sbjct: 119 ADVPAFQNPITERFDRDTMAAALQRSGVTEDQFARDIEGDLLRSQLMATLAGFSDVPDQI 178 Query: 178 LLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-----KDNYRAPEYK 230 A R+ E R + +V++ I DP++ L + ++ + + PEY+ Sbjct: 179 ---AATRYLVAEEQRRMTGLVIDASTADEIEDPTDETLQTFIDETLGANGEPVFTRPEYR 235 Query: 231 RISYILFDVHEKEKKIEISNDELQA--EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 I+ + F + + + + + L+ +YE + +P R+ QL +Q AD+A Sbjct: 236 AITLVRFQLDDFIRDVAVDEATLREVYDYEIATNQIGTPAYRSFTQLTVSDQAGADDAAS 295 Query: 289 SLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L G+ +A E G L + F IPD L +++F+++ G+ + G F Sbjct: 296 RLAAGEAPSAVAAELGLDTPLVQTDVQQFE---IPDEGLGETVFAMS-AGE-ARAVEGRF 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ ++ + + +F+E + + +A++ + + E A G S+ E++ Sbjct: 351 GWSAVIITGAEEATQPAFEEERPRLQADAARAQATDDMYDAISAFETVRATGASL-EVAA 409 Query: 407 REKIVSIDL--PL-VDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-- 459 E +++ PL V+ +D++ G+ A+ ++L P + DH Sbjct: 410 EESGTPLEIFQPLAVNSIDEDLQFDGERYQAL--APEIL--------PAAFDHIEGFATN 459 Query: 460 -----DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 + + +++ E I +R +LEE+ + W++++ ++ ++A Sbjct: 460 LESYNETDFYTLRVDEIIQSRPFELEEIREQAESRWRSIQVDTQLQARA 508 >gi|262166048|ref|ZP_06033785.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223] gi|262025764|gb|EEY44432.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223] Length = 619 Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 100/465 (21%), Positives = 203/465 (43%), Gaps = 21/465 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I P F + KF +++ + L R G + ++ K L R ++ G P Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L DQ + R + I L+ S+ + Q+++ + + PE ++SY Sbjct: 179 EVNLQDQ---LISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKK 292 + + +I I ++ Q Y ++ +KY S E R V ++ ++++A L Sbjct: 236 VELSADALKAEIAIDDEAAQQYYHEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNA 295 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY Sbjct: 296 GADFTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++K + EV + I ++ +A + LE+ LA S D + Sbjct: 355 HIIRLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEK-LAFEHS-DSLDEAA 412 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 K +S + DF + + ++ A+P Q L K+D L+ + Sbjct: 413 KAISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLNSE 456 >gi|160898321|ref|YP_001563903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] gi|160363905|gb|ABX35518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] Length = 631 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 178/408 (43%), Gaps = 29/408 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + I L +L +P F+ G++ F+ S S V V ++ + + N+ Sbjct: 1 MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SVIVARVDGHEIKQADWENA 57 Query: 60 WKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + + + ++S +AR L+K + D +++ A Q + +A R Sbjct: 58 HRMESDRLRAENPNIDPKLLDSPQARYATLEKMVRDQVLAAAV--QKMHLAASDAQLVRT 115 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI D + + + + +G+ + + + + LS V+G G + Sbjct: 116 LQEIPAIAALKKPDGSMDAEAYRALVGSQGLTPEGFEANLRRELSMNQVMGGVTGTAFAT 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + QA ++ R V + P+ A L +++ + ++ E ++ Y+ Sbjct: 176 DTQVKQAIDALYQRREVQVARFEASAYASKVQPTEADLKAYYDAHTSQFQQSEQAKVEYL 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-- 293 L DV E I +S D++++ Y +N E+ PE R ++ K+A A Q K Sbjct: 236 LLDVPSIEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKA 295 Query: 294 -----------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 K+F +LA ++ G + S LG F + + D+ F + K GD Sbjct: 296 EELLAELRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVK-PFEDAAFGM-KVGDI 353 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + V+H FGY I + +IK SF++++ + +++ +A K E Sbjct: 354 SDVVHSDFGYHIISLVDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAE 401 >gi|213582060|ref|ZP_03363886.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 405 Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 189/394 (47%), Gaps = 28/394 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D YT+ L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V V++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 G+++A + +I+P+ EV+ DIA +++ KA Sbjct: 347 GFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKA 380 >gi|300114008|ref|YP_003760583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus watsonii C-113] gi|299539945|gb|ADJ28262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus watsonii C-113] Length = 640 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 100/530 (18%), Positives = 217/530 (40%), Gaps = 36/530 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ A + + ++ +PF +WG+++ + G + SV +++ F ++ Sbjct: 1 MLQAIRSRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEAVAASVNGEEISTREFQLAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG---RVWG 117 + +Q++ F++ + + D N++ G + + D E G Sbjct: 60 QN----YTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDAAAELGLGMSDSALS 115 Query: 118 EIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ RS F G+ +F + + L+ +G+ Y L + + Sbjct: 116 QVIRSNEAFQGESGQFDSQRYEAVLSSQGLTPVAYEARLRSALLSEQLASSLRLSAFATQ 175 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R V Y ++ + + S + Q+++ + + +R PE ++ Y+ Sbjct: 176 QEVDTIARLRHQKREVAYSIVPSANFHDAIQVSADKVRQYYDDHPEEFRIPEQVKVHYLR 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------- 286 I + L+ YE++K++Y PE R ++ + DEA Sbjct: 236 LTAASLATDIPLDEQTLRNFYEESKDQYRVPERRRASHILITIPPQGDEAVRQQAQEKAE 295 Query: 287 --FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + L++G+ F ++A E+ G + LG F + + D + ++FSL + G + Sbjct: 296 AVLERLQQGEAFEEVAKEVSEDPGSAKKGGDLGFFGRGVM-DPAFEKAVFSLEETGVLSE 354 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 I FGY I ++ I+P F+ V++++A + R A E+ E + L+ Sbjct: 355 PILSKFGYHIIKLTGIEPGEVKPFEAVREELAQKYRQQIAEEQFYEQAEILDNLTYENPF 414 Query: 401 MDEISRREKIVSIDL--PLVDFAGKDVKGK-EVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 E++ +S++ P G + +V A + E++L T+ Sbjct: 415 TLEVAAESLGLSVETSEPFSQNGGSGIAANTKVVAAAFSEEVLREEM-------NSQTIE 467 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 L + V++ + +PA + EEV +++ + + + LV Sbjct: 468 LAPNDLVVVRLDKHLPADTKPFEEVREQIQEKLTLEQAKAQAQKRGEALV 517 >gi|68171424|ref|ZP_00544815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia chaffeensis str. Sapulpa] gi|67999166|gb|EAM85825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia chaffeensis str. Sapulpa] Length = 408 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/415 (20%), Positives = 182/415 (43%), Gaps = 25/415 (6%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQ 62 I S+ + K L++L + + F S + + +G +K+ + +++ Sbjct: 3 IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 EL I + + E+ + L+ L+ L +F + + L+ + I Sbjct: 63 ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL----- 177 F ++ F F L+ G+ E+ YI+ K T ++ G + + Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182 Query: 178 LLDQAKRFYFENRSVDYI----VLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKR 231 L+ Q + + R++D I N+ VP I + L + +E+ + N PE + Sbjct: 183 LIKQILQNLHQARTIDVIEISPTTNDISVPNIDE-----LKKLYEEKRKSGNLTFPESRV 237 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y+ D + ++ +E+ + + ++ E R + LVF + EA+ A ++L Sbjct: 238 IEYVTIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALN 293 Query: 292 KGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 +G F + + L +I+L + K +P+ + + +FSL K+G+ +P++H FG+ I Sbjct: 294 EGTDFDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHI 351 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + NI T E+ + IA ++ KA++ + + + + + + GTS+ EI+ Sbjct: 352 IKIKNIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIA 406 >gi|120610416|ref|YP_970094.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120588880|gb|ABM32320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 642 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/412 (22%), Positives = 183/412 (44%), Gaps = 37/412 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ V I L +L +P F++ G+ F+ S S+ V V + + N+ Sbjct: 1 MFESIRKHSK--VVMIVLFLLIIPSFVLVGIDRNYFT-SKSAVVARVDGHDITQDDWDNA 57 Query: 60 WKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E I + V ++S RAR L++ + D ++ A + + + +A R Sbjct: 58 HRMETDRIRAQSPSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHL--VTSDAQLART 115 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG----G 171 I D + + + + +G+ + + + + LS + V+G +G G Sbjct: 116 LQGIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFESNVRRELSLSQVMGGVLGSAFAG 175 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 P+ L LD ++ R + + + A P++ L +++ ++ +R PE+ Sbjct: 176 QEPARLALDA----LYQRREIQVARFDAKDFAAKVAPTDDELQSYYKAHEAQFRQPEHAD 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----- 286 + Y++ D+ I +S D+L++ Y++N E+ E R ++ K+A A Sbjct: 232 VQYVVLDLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKA 291 Query: 287 ---FQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 Q+L K F ++A ++ G + S LG F + + D+ FS+ K Sbjct: 292 RARAQALLEQVRKAPGTFAEVARKNSQDTGSAPSGGDLGFFKRGDMVK-PFEDAAFSM-K 349 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 KGD + ++ +GY I ++++K +F+EV+ + + + +A K E Sbjct: 350 KGDISDLVESEYGYHIIQLNDVKTPRQPTFEEVRAKLETEAKQQQAQRKFAE 401 >gi|229521840|ref|ZP_04411257.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM 11079-80] gi|229340765|gb|EEO05770.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM 11079-80] Length = 619 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 107/515 (20%), Positives = 217/515 (42%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKTPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|91788924|ref|YP_549876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] gi|91698149|gb|ABE44978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] Length = 643 Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 123/529 (23%), Positives = 229/529 (43%), Gaps = 45/529 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + IRK ++ +A +FL L VP F+++GL S V V + + S + + Sbjct: 1 MFDFIRKHTKVTMALLFL--LIVPSFILFGLDGYNRSREQGVAVARVDGKDIIQSEWDRA 58 Query: 60 WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQF---IEDIGLEADH 112 + E+ + + +++S +AR L++ + D +++ A D+F I D L A Sbjct: 59 HQLEVDRLRASMPSLDAKLLDSPQARYATLERLVRDRVIAAAA-DKFKLVISDQRL-ARE 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + EIA D + + L +G++ + + + LS V+ Sbjct: 117 LQQSSEIAS---LRRSDGNLDMERYRQVLGSQGMSPEMFEANVRADLSNRQVLTGIGASG 173 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S+ D A YFE R + N A P++A L Q+++ + ++APE I Sbjct: 174 FSSSSAADLALNAYFEKREIQLARFNAADFAAKLSPTDADLDQFYKANEKLFQAPEQASI 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSL 290 Y++ DV K I I+ +L+ YE+N ++ E R ++ P A+E ++ Sbjct: 234 EYVMLDVETVRKSITINEADLKTYYEQNLQRLSGAEERRASHILITSPKTASAEERQKAK 293 Query: 291 KKGKKFIQLAEEQGKSLSDIS---------------LGSFSKEYIPDVSLADSIFSLAKK 335 K ++ + ++ + +D++ L F++ + D++FS+ KK Sbjct: 294 AKAEELLAAVKKSPDTFADVARKNSQDPGSAPSGGDLDFFARGAMVK-PFEDAVFSM-KK 351 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 GD + V+ FGY I +++IK SF+E+K ++ ++ +A +K E + Sbjct: 352 GDISAVVESEFGYHIIRLTDIKAPKQRSFEEMKPELEADLKKQQAQKKFSEAAE------ 405 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSK 452 A + E + K V+ L L +V + A + + L +FG D K Sbjct: 406 AFTNGVYEQAGSLKPVAERLKLDIKTASNVTRQPSAGTTGVLANPKFLNALFGPDAVEKK 465 Query: 453 DHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 +T A+ V +I + PAR + EV V++ W ++AEE Sbjct: 466 RNTEAIEVAPSQLVSGRILQYTPARTQPFAEVKDIVRQRWLAQRSAEEA 514 >gi|46579478|ref|YP_010286.1| peptidyl-prolyl cis-trans isomerse domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602972|ref|YP_967372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|46448892|gb|AAS95545.1| peptidyl-prolyl cis-trans isomerse domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563201|gb|ABM28945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|311233293|gb|ADP86147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris RCH1] Length = 629 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/431 (21%), Positives = 185/431 (42%), Gaps = 31/431 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++IR +++W K+ ++ V F+ WG+ +S V +V ++ + FI + Sbjct: 1 MLDVIRGHAQSWGVKVAFGLIIVVFVFWGVGS--MQEGPTSVVATVNKKPIVIRDFIREY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + + V E + +GL +++L +V+ + Q E +G+ + I Sbjct: 59 ERQVESLRTRFPGVTADE-LKKLGLKRQVLQQMVAETLMQQEAERLGITVTPYELRAAID 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F KF + + ++ + ++ + + R D++G + + + ++ Sbjct: 118 QIPAFRDASGKFDPETY-----KKVLKAQQTVPGRFEEGVRKDMLGRKMRALVTAGAVVT 172 Query: 181 QAK-----RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 A+ + E RS+DY++ A A +A L W++ K + P+ R+ ++ Sbjct: 173 DAEARDMFTYAQEKRSIDYVLFPLDEYAAAASIEDAALQAWYDSNKARFTEPQKVRLDFV 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADE--------- 285 I+I + A Y +N YF PE ++ + ADE Sbjct: 233 RISAESLAAGIDIPETAIAAFYAENAASYFMQPERVRARHILVRVPEGADEATVRKAEER 292 Query: 286 ---AFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 A +K GK F +A E G + + LG F + + D+ F L K G+ + Sbjct: 293 IADAAAQIKAGKDFAAVAAKVSEDGSARNGGELGWFGRGEMVK-PFEDAAFGL-KPGEVS 350 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + FG+ + + + EV+ +I ++ KA EKV + E ++ G Sbjct: 351 APVRSQFGFHLIKSEGHEAQRQKALDEVRNEIRKRLAEEKAIEKVHDSLDNALELVSAGK 410 Query: 400 SMDEISRREKI 410 S+DEI+ + K+ Sbjct: 411 SVDEIAAQLKL 421 >gi|311695072|gb|ADP97945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium HP15] Length = 614 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 120/551 (21%), Positives = 247/551 (44%), Gaps = 61/551 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ +AK+ + +L V IWG+ + SG V +V + + F+ Sbjct: 1 MLQDIRNNAQGTIAKVIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVV 60 Query: 61 KQE----LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + E L + +++ ++ R+ +LD+L+ L Q GLE + + Sbjct: 61 QMESQRRLSRMENPDPSMLDEDQIRT-----DVLDSLIQEQVLIQDANAQGLELNDADID 115 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + P F D +F+ D FV+ + G+ + + + + + VV G+ S Sbjct: 116 ALITQMPQFQ-VDGQFNRDRFVATVRNMGMG----VGEFREAMRKQYVVNQIRAGIVQSG 170 Query: 177 LLLDQ--AKRFYFENRSVDYIVLNNRHVPA--IADP---SNAVLTQWFEKYKDNYRAPEY 229 L+ D+ + +N++ + VL+ +PA +AD S+A + ++E+ ++ PE Sbjct: 171 LVADENAEQLLQIQNQTRSFRVLD---IPASSVADAVSVSDADVEAFYEENSGAFQQPER 227 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 +YI + + IE+ + ELQA YE+ S E R ++ +ADE + Sbjct: 228 VDAAYITLSLGALAESIEVDDAELQAYYEQQAADLASEE-RRASHILIEEGSDADETMAT 286 Query: 290 LKK----GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----------DSIFSLAKK 335 +++ G+ F LA E S+ + S E D+ A +++F+L ++ Sbjct: 287 IQERLAAGESFADLARE-------YSIDTVSAEDGGDLGYAGRGIYAEPFEEALFAL-EE 338 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + + SFG + + +++ S S E++ +Q+R A EK +E + + L Sbjct: 339 GEVSEPVRTSFGVHLIRLEDVRESEVPSLDEME----DQLRRELAREKAREQFAEVRAEL 394 Query: 396 ALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 A + D+++ + + +++ + +D G + P+ L R +D L + Sbjct: 395 ADSAYAADDLAGPAEELGLEVREANGVTRD--GGQA---PFDHAGLVRQLFSEDVLDAGY 449 Query: 455 TVALPD-GSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 L D G + V ++ + A L++V ++ + KT E +S +A+ ++ + Sbjct: 450 NTELIDVGDNVSVVARVNKYHEAEQLPLDQVRDQIRTTLEQRKTREALSERADAIIADL- 508 Query: 512 KEGKNFRDIGK 522 + G++ IG+ Sbjct: 509 ESGQSPEGIGE 519 >gi|46204905|ref|ZP_00049316.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 294 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 12/295 (4%) Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTS 400 + G FG V+ V+ I+P F EVK +I ++ + + E + + +E+ A Sbjct: 5 VKGRFGTVLLRVTGIEPGDIKPFDEVKDEIRKEVALRRVREGEFDKAQDAIEDARASAKP 64 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + EI++ + + +P VD G D GK V IP KE L F + D + + Sbjct: 65 LAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAF-RADVGNDTEALRTKT 123 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G +W + + P+ ++ L EV + K W + A+ + +K+ +L E ++G+ + Sbjct: 124 GGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKELT-ERLEKGEAIEAV 182 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 + G L + R ++ G D + ++F+ PV P +G VFKVT + Sbjct: 183 AQETGLPLKQVADLGRNQTKDDLSG-DIVERIFTTPVGKAASAP--SGEGRAVFKVTAAT 239 Query: 581 V-----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 V G ++ + ++ L + D+L IA ++ V V+ ++R L GE Sbjct: 240 VPAFVAGTPSDR-QLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRALGGE 293 >gi|188534628|ref|YP_001908425.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia tasmaniensis Et1/99] gi|188029670|emb|CAO97549.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia tasmaniensis Et1/99] Length = 622 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 139/595 (23%), Positives = 251/595 (42%), Gaps = 60/595 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R AS KI L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGD-YAAKVNGQEISRAQLERAFS 59 Query: 62 QELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E Q +G V+ S + ++ L L+ L Q+ +DIGL ++ Sbjct: 60 SERARQQQMLGEQFSVLASNEGYMQQMRQQTLSQLIDEVLLTQYAKDIGLTIGDDQIKQA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-----FVGGMR 173 I P F +F + ++S + G + +Y + K L+ ++ FV G Sbjct: 120 IFTQPAFQTA-GQFDNAKYLSIINNIGFSADQYAEALRKQLTTQQLINAVTKTDFVLGNE 178 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L + R V + ++ + A D + ++ ++++++ + + E R+S Sbjct: 179 ADSLAA-----LVSQQRLVREVTIDVNALAAKQDVTQEEISNYYQQHQSSLMSSEQFRVS 233 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D E+ + S ++Q+ YEK+++ Y P+ + + EA SLKKG Sbjct: 234 YIKMDAAAMEQAV--SESDIQSWYEKHQDDYTQPQRNRYSIIQTNTEAEARSVLDSLKKG 291 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E KS+ IS +G + PD L + SL +KG + VI S G Sbjct: 292 DDFAKLAKE--KSVDPISARNGGDMGWLEPQTTPD-ELKGA--SLKEKGQLSGVITSSPG 346 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405 ++IA + +P EV DIA +++ EK + +L++ ++ S D ++ Sbjct: 347 FIIARLDETQPEKVKPLSEVHDDIAAKLK----QEKAVAAFYKLQQKVSDAASNDNESLA 402 Query: 406 RREKIVSIDLPLVDFAGK-----DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E++ + D+ + D+K K V + LL G++ + V D Sbjct: 403 SAEQVAGVKAVDTDWFDRDNLPADLKFKAVQDAIFNGALL----GENGAPGSNSDVISVD 458 Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 G +V +I E P + L++V + K K ++ ++A++L+ E K GK D Sbjct: 459 GDRAFVLRIHEHKPEAVKPLKDVTAQITATLKQQKALQQAKTQADKLLAEL-KAGKG-DD 516 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVV 573 K + RM G D +SQ FS P P E SY V Sbjct: 517 ALKAADLKFAAQQTLTRM-------GQDALSQAAFSLP------LPSEGKPSYGV 558 >gi|15604653|ref|NP_221171.1| hypothetical protein RP822 [Rickettsia prowazekii str. Madrid E] gi|3861348|emb|CAA15247.1| unknown [Rickettsia prowazekii] gi|292572472|gb|ADE30387.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia prowazekii Rp22] Length = 528 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/405 (21%), Positives = 182/405 (44%), Gaps = 25/405 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK S +++ ++ ++ F+ +G+ D L S V+ + + F+ + Sbjct: 1 MLDNIRKTSDSFIMRVLFAIIAFAFVGFGIKDILNVRRNSDIVIFSHAKNISKQDFLQAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS+++G + E + +D +IL L+ LD + L+ V + Sbjct: 61 SLEINAISKQMGKSLIDEEITQLNIDNRILKRLIYNNILDYLVSYYDLDLGDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F ++F + I E++Y+ ++ + + + +V F + D Sbjct: 121 ESPMFKNEQGVFDIEIFKTYFKNAYIGEEKYLLNFKEKVLKNLIVSTFAKSFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I L+ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE----------QLVFPNQKEADEAF 287 ++ K+ KI ++ DEL Y +NK+++ V+ ++ N + A + Sbjct: 241 NI--KDFKISVTQDELLEFYNENKDEFGDQSFEAVQTQLHDLLRAKKIDILNMELAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-------ADSIFSLAKKGDFTP 340 + G ++++E+ + +++ S++ E I D + ADSIF L++ P Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYVSYA-ELIGDNIMADNIAESADSIFELSEGELSYP 357 Query: 341 VIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + Y+I + +I+P+ F + KD N++ I + E V Sbjct: 358 IEAEDKSYLILVELKSIQPAQIPKFNAI-KDQVNKVWIKRNIEDV 401 >gi|120554754|ref|YP_959105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] gi|120324603|gb|ABM18918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] Length = 617 Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 122/531 (22%), Positives = 241/531 (45%), Gaps = 50/531 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS- 59 ML+ IR +++ +AK+ + +L + IWG+ + +G V +V Q + F+ + Sbjct: 1 MLQDIRDNAQSTIAKVIVGLLIISLSIWGMDAIIGGFTGEPEVATVNGQDITEREFLRTV 60 Query: 60 ---WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +Q L + + +++ ++ R + +LD L+ A L Q + GLE + Sbjct: 61 QMESQQRLMQMENRDQSLLDEDQIR-----RDVLDALIREAVLTQDAQSQGLELTDADID 115 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLA---------REGINEKEYIDHYTKMLSRTDVVGM 167 I + P F D +F+ D FV+ + RE I + ++ +++T VV Sbjct: 116 SLITQMPQFQ-VDGQFNRDRFVATVRNVGMGVAEFRESIRKNYVVNQIRAAIAQTGVVA- 173 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 P N A +N++ D+ + L+ V D + A + ++++ + +R Sbjct: 174 ------PENA----AHLLAIQNQTRDFRVLTLDGSSVQDQVDVTEADVQAYYDENLNQFR 223 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEAD 284 PE +YI + IE++ DEL+ YE+ E+Y E R LV ++ +A Sbjct: 224 QPEQVDAAYITLSQGALAESIEVAEDELRTYYEERAEEYAREERRAAHILVEAGDEGQAT 283 Query: 285 EAF--QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFT 339 A Q L+KG+ F LAEE G F+ + D + D++F L ++G+ + Sbjct: 284 LATIQQRLEKGESFAVLAEEYSVDTVSAQEGGDLGFAGRGVYDEAFEDALFGL-EEGEVS 342 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + SFG + + ++ S +F E+++D+ ++ TKASE+ E R + A Sbjct: 343 GPVETSFGLHLIKLEEVRRSDVPAFDELREDLRLELARTKASERFAE--VRSQLADAAYA 400 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + D E++ +++ +V+ +D A P+ L R +D L + L Sbjct: 401 ADDLAGPAEEL-GLEIRVVEGVSRD-----GGAAPFDHAGLVRQLFSEDVLEGGYNTELI 454 Query: 460 D-GSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 D G + V +++E R L +V ++++ + +T + ++++ ++LV Sbjct: 455 DVGDNVSVVARVREYHEPRQLALADVEPEIRRILERTETRDALAARVDELV 505 >gi|52425898|ref|YP_089035.1| SurA protein [Mannheimia succiniciproducens MBEL55E] gi|52307950|gb|AAU38450.1| SurA protein [Mannheimia succiniciproducens MBEL55E] Length = 622 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 102/450 (22%), Positives = 199/450 (44%), Gaps = 46/450 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS + +KI ++ V F++ G++ + + + +S V + +++ +F + Sbjct: 2 VMEKMHNASNSIFSKIIFALISVAFVVSGMAGYMVATADTS-AVKINGEEISQQAFQQQY 60 Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E +SQ++G V S GL K +L+ L+ L Q++ D+ L A V Sbjct: 61 NDEYQRLSQQLGAQFSAVADTPEFSEGLRKSVLNRLIDQELLRQYVTDLKLVASDASVKQ 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG---MRP 174 EI +P F D KF ++ + L + Y ++ + L R D + + G M P Sbjct: 121 EIVTTPAFQA-DGKFDNNAYQQTLRANNMTADMYAEYVREAL-RLDQLQSGLAGTVLMLP 178 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEY 229 + ++ + +F+ R+ L P A+ + +T ++ K + PE Sbjct: 179 AQQ--EEFAKLFFQKRTFRLAKL-----PLTAEMAKQTVTDQEVADYYNANKSAFMVPEL 231 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ Y+ EK +++++ E+Q Y+ NK ++ S + + F + +A +A+Q+ Sbjct: 232 VKVQYLDITRAAAEKAVKVTDVEIQQYYQDNKAQFVSKAQDRLAHIQFAKETDALDAYQA 291 Query: 290 LKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 L+ G F LA+E KSL S LG + +P + ++ +L + G ++ + Sbjct: 292 LQNGADFAALAKE--KSLDKPSAVNGGELGWLNAGDLPK-AFEEAAAAL-QIGQYSQPVK 347 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-----------TKASEKVKEDYKRLE 392 Y I + + K S +EVK IA+Q+R + +EK ED LE Sbjct: 348 VDNQYHIIKLEDRKEPKAQSLEEVKDLIASQIRQDLLNNQFYSLEKQVAEKAFEDQSSLE 407 Query: 393 EFLALG----TSMDEISRREKIVSIDLPLV 418 + D SR++ +++ P V Sbjct: 408 AAAKVAGVEIKETDYFSRKDIPAALNFPSV 437 >gi|161504371|ref|YP_001571483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865718|gb|ABX22341.1| hypothetical protein SARI_02482 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 623 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 136/650 (20%), Positives = 288/650 (44%), Gaps = 52/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D +F ++ + + + + G+ D Y + L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGRFDNNRYNAIVNQMGMT----ADQYAQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + +L D+ + R V ++ + A ++ ++ ++++ K + PE R Sbjct: 173 DFMLKGETDELAALVSQQRVVREATIDVNALAAKQQATDQEVSSYYDQNKTRFMTPEQFR 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +SYI D + + S+ ++QA Y+++ +++ PE + + +A +L Sbjct: 233 VSYIKLDAATMQAPV--SDADIQAYYDQHLDQFTQPERHRYSIIQTKTEDDAKAVLDALN 290 Query: 292 KGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E+ + G +P++ A L +KG + VI S Sbjct: 291 KGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA----GLKEKGQISGVIKSSV 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--I 404 G+++A + +++P+ EV+ DIA +++ EK + Y L++ ++ S D + Sbjct: 347 GFLVARLDDVQPAKVKPLSEVRDDIAAKVK----QEKALDAYYALQQKVSDAASNDNESL 402 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY 463 + E++ + + D +E+ P + + + G++ + + DG Sbjct: 403 AGAEQVAGVKAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDR 462 Query: 464 MW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E P + L V V K K ++ A +L++E K GK + K Sbjct: 463 AFVVRVSEHKPEAVKPLAAVKEQVIALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-K 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGL--SYVVFKVT 577 G S ++R D +SQ S P + + + N + + V+ + Sbjct: 521 AAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVYGVANDMQGNIVLLALD 573 Query: 578 NSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 574 EVKAGSMPEAQKKAMMQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|90407416|ref|ZP_01215600.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp. CNPT3] gi|90311447|gb|EAS39548.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp. CNPT3] Length = 635 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 90/406 (22%), Positives = 184/406 (45%), Gaps = 17/406 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ S+ AKI L+V+ + F + G+S L +S ++V ++ +S + Sbjct: 1 MLDKMREGSQGIAAKIILIVIILSFALAGVSGYLGG-GNASVAITVNGDEISNASVEQEY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKIL----DNLVSGATLDQFIEDIGLEADHGRVW 116 K E + Q+ G + A S G K++ L+S + Q I D+ L +V Sbjct: 60 KNERSRLQQQYGEQFDI-IAASPGFVKQVRAQAKQTLISNLLIAQSIADMDLRIGDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + P F K +F+++ ++S L R ++ + L R ++ V Sbjct: 119 DAIRKMPEFQVK-GEFNNEQYLSTLRRASYTPAKFSQSIKQDLVRRQLLNTLVSSEFILP 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + +D + + R + ++ R P S + ++++++ N+++ + + Y+L Sbjct: 178 IEIDNVDKLQAQQRVARILNISGRAFPQTTPISIKDIQAYYDQHEQNFQSLQQVSVDYVL 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----KEADEAFQSLK 291 D H+ +K IS+ + QA Y+ ++ Y E R V ++ K+A +L+ Sbjct: 238 LDAHKLSQKTVISDVQAQAYYDDHQVDYQRVERRKVAHILVQGHSADALKKAQTILLALE 297 Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG F LA + + + +D +L F + + D + F+L K + ++ +FG Sbjct: 298 KGADFSVLARAKSEDILSAKNDGALDWF-EHGVMDEQFDKASFALTAKAPLSDIVKSTFG 356 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 Y I + +I+ T+ F +VK + ++ A E+ + ++L E Sbjct: 357 YHIIKLLDIQQKQTLPFAQVKATVMKTLKKENADERYYDLQQQLRE 402 >gi|153831363|ref|ZP_01984030.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39] gi|229529056|ref|ZP_04418446.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)] gi|148873155|gb|EDL71290.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39] gi|229332830|gb|EEN98316.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)] Length = 619 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 107/515 (20%), Positives = 216/515 (41%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|326316510|ref|YP_004234182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373346|gb|ADX45615.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 642 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 89/412 (21%), Positives = 182/412 (44%), Gaps = 37/412 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ V I L +L +P F++ G+ F+ S S+ V V + + N+ Sbjct: 1 MFESIRKHSK--VVMIVLFLLIIPSFVLVGIDRNYFT-SKSAVVARVDGHDITQDDWDNA 57 Query: 60 WKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E I + V ++S RAR L++ + D ++ A + + + +A R Sbjct: 58 HRMETDRIRAQSPSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHL--VTSDAQLART 115 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG----G 171 I D + + + + +G+ + + ++ + LS + V+G +G Sbjct: 116 LQGIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFENNVRRELSLSQVMGGVMGSAFAA 175 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 P+ L LD ++ R + + + A P++ L +++ ++ +R PE+ Sbjct: 176 QEPARLALDS----LYQRREIRVARFDAKDFAAKVTPTDDELQAYYKAHEAQFRQPEHAD 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y++ D+ I +S D+L++ Y++N E+ E R ++ K+A A + Sbjct: 232 VQYVVLDLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKA 291 Query: 292 KGKK-------------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 K + F ++A ++ G + S LG F + + D+ FS+ K Sbjct: 292 KARAQALLEQVRKAPNTFAEVARKNSQDSGSAPSGGDLGFFKRGDMVK-PFEDAAFSM-K 349 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 KGD + ++ +GY I ++++K +F+EV+ + + + +A K E Sbjct: 350 KGDISDLVESEYGYHIIQLNDVKTPKQPTFEEVRAKLETEAKQQQAQRKFAE 401 >gi|303249065|ref|ZP_07335308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio fructosovorans JJ] gi|302489530|gb|EFL49472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio fructosovorans JJ] Length = 654 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 114/537 (21%), Positives = 230/537 (42%), Gaps = 48/537 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W KI ++ + F+ WG+ F ++ + ++ Q V + ++ Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FRGDKATVLATIDGQPVLIKDYEKAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ ++ K + + E + G ++ N+V+ L++ + +G+ + EIA Sbjct: 59 REAQRLVKNKNPDITDKE-LQDGGFRWQVFSNMVTSRLLEEQAKKLGVSVSADELRAEIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F K KF + + L + E+ + + L + G FV P+++ Sbjct: 118 KIPAFQDKSKKFDAKRYENLLRANDVTPGEFEADFRQNLLLEKLAG-FVS--LPASVSEA 174 Query: 181 QAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +A+ F E + YI+ P++ + ++E KD + P +I Y+ F Sbjct: 175 EARSIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDYVEF 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ--LVFPNQ--KEADEAFQS---- 289 + ++++ +++A Y+ N++KY PE V ++ P K A +A + Sbjct: 235 TPKALAQPDKVTDADIEAYYKANQKKYARPEQVKVRHFLIMLPADAPKSAVDAATAKLKD 294 Query: 290 ----LKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 LK G F L + G+ + + GS KE+ P + FSL K G+ Sbjct: 295 IAAKLKAGAAFASLLPKNPNNADGLIGEDWAWLPKGSLPKEFGP---FEEKAFSL-KNGE 350 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + + G + + + EVK DI ++ KAS+K+ + +++ +A Sbjct: 351 ISEPVRTALGLHLIQAGERQAAGERPLSEVKDDIREELAERKASDKLTQSLDNMQDKIAS 410 Query: 398 GTSMDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 G + + + EK LP+ DF KD ++ +Q L +F D Sbjct: 411 GVDLGKAAADEK-----LPVKSADFFSKDNPPTDLG---LSDQALGVLFSMKKGAVSDTP 462 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 ++ DG ++ ++ + PA + L+ DVK+ K A+E +A E +K Sbjct: 463 LSTQDG-FLLARVSDIQPAGFQSLD----DVKEAIKQRLIADEAQKRARAKADETAK 514 >gi|292487473|ref|YP_003530345.1| putative protease maturation protein [Erwinia amylovora CFBP1430] gi|292898715|ref|YP_003538084.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC 49946] gi|291198563|emb|CBJ45671.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC 49946] gi|291552892|emb|CBA19937.1| putative protease maturation protein [Erwinia amylovora CFBP1430] Length = 623 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 122/536 (22%), Positives = 231/536 (43%), Gaps = 43/536 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS KI L ++ + F++ G+ L SG V Q++ + F ++ Sbjct: 1 MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGD-YAAKVNGQEISRAQFERAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G V+ + ++ L L+ L Q+ +DIGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KF + ++S + G +Y + K L+ ++ G ++ Sbjct: 120 AIFTQPAFQTA-GKFDNAKYISIINNMGFTADQYAEALRKQLTTQQLIESVTG----TDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D + R V + +N + A + + + ++++++ + + E R+S Sbjct: 175 VLGNEADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ + S ++Q+ YEK++ Y P+ + + EA LKKG Sbjct: 235 YIKMDAATMQQPV--SESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E KS IS +G E PD L + +L +KG + VI S G Sbjct: 293 GDFARLAKE--KSADPISARNGGDMGWLEPETTPD-ELKRA--ALKEKGQLSGVITSSVG 347 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405 +++A + + +P + EV DIAN+++ EK + +L++ ++ S D ++ Sbjct: 348 FIVARLDDTQPEKVKALSEVHDDIANKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403 Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E+ + + G D +K K V + LL G++ + V D Sbjct: 404 SAEQAAGVKAVETGWFGHDNIPAELKFKAVQDAIFNGALL----GENAAPGSNSDVITVD 459 Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 G +V +I E P + L++V + K K ++ ++A++L+ E K GK Sbjct: 460 GDRAFVLRISEHKPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514 >gi|119774365|ref|YP_927105.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B] gi|119766865|gb|ABL99435.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B] Length = 615 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/405 (20%), Positives = 187/405 (46%), Gaps = 34/405 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ ++ +AK LV++ + F G+S L GSST +V +++P S+ Sbjct: 1 MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYL----GSSTEPAAATVNGEEIPVSALE 56 Query: 58 NSWKQELGMISQKIGFVVNSERA-----RSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 +++ E + Q++G + + A RS+ + +L+ +++ LDQ ++GL Sbjct: 57 QAFQNEKARMEQQLGEMFQTLAADDNYLRSI--RQGVLERMIADKLLDQTASEMGLRISD 114 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 ++ I P F + KF ++ +++ L + G + D ++R +V +G Sbjct: 115 EQIKQAIMEEPAFQ-TEGKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIG-- 171 Query: 173 RPSNLLLDQAKRFYFE----NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 S +L + E R + Y+V+ ++ A ++ +++ D + PE Sbjct: 172 --SEFVLPSESKAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPE 229 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQK 281 + Y+ ++ +++++ +A Y+++ +Y +PE R ++ + Sbjct: 230 QVSLEYLTLSAKSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKT 289 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDF 338 +AD + L+ G F +LA+ + LG + ++ + D + +++F L +K + Sbjct: 290 KADAIYAKLQAGADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGL-EKDQY 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + V+ +G+ I + +++ SF EVK I Q++ A +K Sbjct: 349 SAVVKTDYGFHIIKLLDVQGGAQASFDEVKDRIFAQIKEKDALDK 393 >gi|256830955|ref|YP_003159683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium baculatum DSM 4028] gi|256580131|gb|ACU91267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium baculatum DSM 4028] Length = 632 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 141/666 (21%), Positives = 287/666 (43%), Gaps = 86/666 (12%) Query: 1 MLEIIRKASRTWVAKI-FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+I+R+ +++W KI F +++ V L +G++ ++ V +V + F F Sbjct: 1 MLDILRQGAQSWGIKILFGIIIAVFVLAFGMNR--VQNDQTTVVATVNDSPILFRPFQER 58 Query: 60 WKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ L + SQ +E +G ++IL+ +V + Q +GL + E Sbjct: 59 LQRSLELARSQNPNLT--AEILAQMGFKRQILEQMVIEELMMQQAAKLGLTVSKEELAKE 116 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F + N F + + L + ++ Y + + D + +VG P L Sbjct: 117 IHLIPAFQNESNVFDPASYQNVLRANNLTPGKFESEYMRGMV-MDKLRTYVG--LPGRLG 173 Query: 179 LDQAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 DQA+ FY RS + Y++ + + ++A + +++E K NY P +I Y+ Sbjct: 174 EDQARDFYTYGRSTATISYLMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDYL 233 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSL 290 L +S +E + Y + KE++ E L+ + ADE A Q++ Sbjct: 234 LLTPATLADPAAVSPEETEKYYAEQKEQFKIEEQVKASHLLVRVDENADEESVEKAMQTI 293 Query: 291 K-------KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 K GK F ++A E+ + + LG F + + D+ F+L +KG + Sbjct: 294 KAAQKDLAAGKSFAEVAAQYTEDPSGTQTGGELGWFGRGRMVK-PFEDAAFAL-EKGAVS 351 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + FG+ + V + K + +++ V DIAN + +A+E +++ + E + +G Sbjct: 352 EPVRTQFGFHLITVEDTKSAGYENYESVASDIANIIAEDRAAEILQDRLDQALEMVLVGE 411 Query: 400 SMDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDP--LSKDH 454 +D + K + + L + D+ K+ +++ + P Q+LF D P ++ Sbjct: 412 PLDAVV---KAIGLKLEIRESDYFTKNQGPRDLPGLSPENAQVLF-----DLPQDITTQS 463 Query: 455 TVALPDGSYMWV---QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + + DG + Q+ ES+ + E++ + +D + +K A+ + K +L+L+ Sbjct: 464 PLPIADGYLLATKREQVAESVKPLEAVKAEIVAAITRD-EALKVAKAAADKDLELLLK-- 520 Query: 512 KEGKNFRDIGKNL-GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL- 569 G+ L GA++ T R N G++Q+ + K F ++G Sbjct: 521 ---------GETLTGATVKETEPFGRQGTINGL----GMNQLLA-----TKAFETKSGAW 562 Query: 570 ---------SYVVFKVTNSKVGP------VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 YV+ K +V P EK+ +++ L + + + + +A L+++ Sbjct: 563 LPEAYAFPEGYVLAKAI--QVTPPADEDWAAEKELWLTSLNERAEEQTMQAFVADLRAKA 620 Query: 615 SVTVHD 620 V + + Sbjct: 621 DVRITN 626 >gi|304395503|ref|ZP_07377386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB] gi|304356797|gb|EFM21161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB] Length = 622 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 117/561 (20%), Positives = 248/561 (44%), Gaps = 53/561 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFS 54 M++ +R AS V KI L ++ V F++ G+ + L ++ + +S G+ + F+ Sbjct: 1 MMDNLRAASNNVVLKIILGLIMVSFVLTGVGNYLIGGNNDYAAKVNGQEISRGQLEQAFN 60 Query: 55 SFINSWKQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 S + +Q LG ++ G++ + ++ L L+ A LD +I+D+ L Sbjct: 61 SERSRQQQMLGDQFSQLASNDGYMQQ--------IRQQALSQLIDQALLDSYIKDLHLSI 112 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 +V I F + KF + +++ + G + +Y + K LS ++ Sbjct: 113 SDDQVKQAIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVAN 171 Query: 171 G----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 ++ L+D + R + L+ + A ++ ++Q+++++K ++ A Sbjct: 172 TDFTLKGEASKLVD----LVSQQRDIRQATLDVNALAAKQTVTDDEISQYYQQHKTSFMA 227 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE R+SYIL D ++ + S ++QA Y+++K Y P+ + + +A+ Sbjct: 228 PEQFRVSYILMDAASMQQ--DASEADIQAWYDQHKADYTQPQRTRYSVIQTKTEADANAV 285 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 LK G F +A+ KS+ IS +G PD L ++ L +KG + Sbjct: 286 LAQLKGGASFADVAK--AKSIDPISARKGGDMGWLEPSTTPD-ELKNA--GLTQKGQMSG 340 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 VI S G+++ + +I+P +V+ IA +++ EK + + +L++ ++ S Sbjct: 341 VIKSSVGFLVVRLDDIQPEQVKPLNDVRSAIAAKVK----QEKGVDAFYKLQQKVSEAAS 396 Query: 401 MDE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTV 456 D ++ E+ + + +D + K Q +F + G++ + + Sbjct: 397 NDNESLAGAEQASGLKAKETGWFSQDTLPDALNFDAVK-QAIFNGGLVGQNGAPGNNSDI 455 Query: 457 ALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 DG +V +I E P + L++V + K K ++ ++A++L+ + K GK Sbjct: 456 ITVDGDRAFVLRISEHKPEAVKPLDQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK 514 Query: 516 NFRDIGKNLGASLLTTNQINR 536 +D G +L + ++R Sbjct: 515 --QDALTAAGLTLSASKTVDR 533 >gi|326622155|gb|EGE28500.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 611 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 128/616 (20%), Positives = 268/616 (43%), Gaps = 50/616 (8%) Query: 35 FSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG----LDKKI 89 + + GS+ + V Q + + F N++ E + Q++G SE A + G L +++ Sbjct: 21 YLIGGSNNYAAKVNGQGISRAQFENAFNNERNRMQQQLGDRY-SELAANEGYMKSLRQQV 79 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L+ L+ A LDQ+ ++ L +V I +P F D KF ++ + + + + G+ Sbjct: 80 LNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT-- 136 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAI 205 D Y + L + G+ ++ +L D+ + R V V++ + A Sbjct: 137 --ADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAK 194 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 ++ ++ ++++ K + PE R+SYI D + + S+ ++QA Y+++ +++ Sbjct: 195 QQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFT 252 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYI 320 PE + + +A +L KG+ F LA+E+ + G + Sbjct: 253 QPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV 312 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 P++ A L +KG + VI S G+++A + +I+P+ EV+ DIA +++ Sbjct: 313 PELKNA----GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK---- 364 Query: 381 SEKVKEDYKRLEEFLALGTSMDE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 EK + Y L++ ++ S D ++ E++ + + +D +E+ P + Sbjct: 365 QEKALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADA 424 Query: 439 LL-FRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + + G++ + + DG + V++ E P + L EV V K K Sbjct: 425 IFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAE 484 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ---VF 553 ++ A +L++E K GK + K G S ++R D +SQ Sbjct: 485 QQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ-------DPVSQAAFAL 535 Query: 554 SGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAY 609 S P + + + N + + V+ K G P +K + +TQ + + +++++ Sbjct: 536 SLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSN 595 Query: 610 LKSQYSVTVHDNLIQR 625 L+ + + + D L Q+ Sbjct: 596 LRKEAKIKIGDALEQQ 611 >gi|153827658|ref|ZP_01980325.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2] gi|149737864|gb|EDM52769.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2] Length = 592 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 107/515 (20%), Positives = 217/515 (42%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + E ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRSEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV IP Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTIPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|332185866|ref|ZP_08387613.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17] gi|332014224|gb|EGI56282.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17] Length = 650 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 106/498 (21%), Positives = 198/498 (39%), Gaps = 21/498 (4%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWK 61 II + V I L V+ + F +S+ G STV VG KV + + Sbjct: 8 IINSKAGVIVTFIVLGVIAIAFAAGDVSNIAGMAGGLTGSTVAKVGSAKVTVDDLRTAAQ 67 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E+ Q+ + ++ + G + +L V+G +L+QF +D G+ V G+IA Sbjct: 68 NEVAAYRQEQPTLDMAQFIAAGGFEG-VLQREVTGLSLEQFGKDQGMVVSRRLVDGQIAS 126 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F G + +F ++ LA+ + + + + L + +G + ++ + Sbjct: 127 IPAFRGPNGQFDPALYQQLLAQRKMTDAQVRTDLQRTLFAQQLTVPTIGATQMASQMALP 186 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R + + R V A PS+A + ++ + Y PE + + Y L Sbjct: 187 YASLLLEKRQGEVGYIPTRLVNAGGAPSDADIQTFYSRNVQRYTLPERRVVRYALVTPSA 246 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 + ++ E+ Y+ N +Y + + R V Q++ +Q A+ K G + A Sbjct: 247 IAAQSAPTDAEIARYYQTNAARYAATQKRDVTQVIVADQAGANALATRAKGGASLAEAAR 306 Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 G S + +++ + P V AD++F A+ P I G G+V+A V + Sbjct: 307 AAGLEASVQKGVDKATYATQSAPAV--ADAVFGAAQGAVVGP-IRGPLGFVVARVDAVTQ 363 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + + + +I ++ K + + E +E+ L+ + DE+ K+ + P V Sbjct: 364 VPGKTLAQARPEIVTELTKQKQTAALGEMRNAIEDSLSGNATFDEVIADRKLQAQATPAV 423 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWV---QIKESI 472 G + ++ F +D D +P DG + V QI+ S Sbjct: 424 TAQGAAPDAPAFQPSAEQRAMITAAFTAED---GDAPQIVPIGQDGGFAVVGVGQIQRSA 480 Query: 473 PARDRKLEEVLTDVKKDW 490 P R L +V V D Sbjct: 481 P---RPLAQVRQQVIADL 495 >gi|156935006|ref|YP_001438922.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Cronobacter sakazakii ATCC BAA-894] gi|156533260|gb|ABU78086.1| hypothetical protein ESA_02857 [Cronobacter sakazakii ATCC BAA-894] Length = 625 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 123/541 (22%), Positives = 233/541 (43%), Gaps = 53/541 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+S+ L S+ V Q++ + N+ Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + +++G + S L ++ L L+ A +DQ+ + L +V Sbjct: 60 NIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF + + + + G++ +Y L+ +V +G S+ Sbjct: 120 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMG----SDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L DQ + + R V + + S + +++++ +N+++PE R+S Sbjct: 175 ILPGESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D + S DE+QA Y+K+++++ P+ + + EA LK+G Sbjct: 235 YIKLDAAALAENA--SEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F LA+E KS+ I+ +G PD ++ L +KG + VI S G Sbjct: 293 ADFATLAKE--KSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKEKGQLSDVIKSSVG 347 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL--------GT 399 ++I + +I P+ EV DI S KVK++ K L+ F AL Sbjct: 348 FLIVRLDDITPATVKPLSEVHNDI---------SAKVKQE-KALDAFFALQRKVSDAANN 397 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVAL 458 + ++ EK + + +D +E+ P + + + G++ + + Sbjct: 398 DNESLASAEKAAGVKAVETGWFSRDAVPEEINFKPVADAVFGGNLLGENGTPGSNSDIIT 457 Query: 459 PDGSYMWV-QIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 DG +V +I + P ++ L EV +T + K K +K A E + Q +L K G Sbjct: 458 VDGDRAFVLRITDHKPQAEKPLAEVKDQVTALVKHQKALKAANEEA----QNLLSALKAG 513 Query: 515 K 515 K Sbjct: 514 K 514 >gi|237748739|ref|ZP_04579219.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13] gi|229380101|gb|EEO30192.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13] Length = 647 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 138/658 (20%), Positives = 267/658 (40%), Gaps = 69/658 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR R + +I L+V +P I+ + V V + + + N+ Sbjct: 1 MLEFIRNHKR--LTQIILLVFIIPSFIFVGVEGFKRFGDGDAVAKVAGKSITQQEWDNAQ 58 Query: 61 KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ + Q+ G +++ S +L NL+ L + + L V Sbjct: 59 REQAERLRQRAAASGQPFDNKWIESSEFKWNVLQNLIVKRVLLETVNKENLSVPEQIVLQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P G D K + LA +G+N D + M+ + + + S + Sbjct: 119 RIREIPGLIGPDGKLDEARYKEALAAQGLNP----DMHFAMVRQDMAIQQLAAPIEYSAI 174 Query: 178 ----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 + + + + R V ++ NN + ++ L +++ ++ + PE+ + Sbjct: 175 EPTAVTQRVFNLFEQEREVQHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVE 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 I+ D+ K I+IS+ +LQ+ Y +NK+++ PE R + ++ K A EA +S K Sbjct: 235 VIVLDMPSVAKNIKISDADLQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAEKSEAKK 294 Query: 294 K-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 K +F +LA ++ G + + LG F++ + D++F + KKG Sbjct: 295 KAEGILAELKANPARFAELAKANSQDPGSAQNGGDLGFFTRGKMVK-PFNDAVFGM-KKG 352 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL- 395 D + ++ FGY I VS+IKP+ +V+ + ++ +A+ K E + + Sbjct: 353 DISDLVQTDFGYHIITVSDIKPAVAKPLAQVRDRVLQELTREQANRKFAEMSETFSNMVY 412 Query: 396 ALGTSMDEISRREKIVSIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 S+ ++ K+ P L K ++ A P ++L +F D K + Sbjct: 413 EKPDSLKPVADALKLTIHSFPNLARDPAIAAKQNQLLANP---KILQAIFTDDVVKGKHN 469 Query: 455 TVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV----- 507 T A+ + V +I + PA ++V K V TAE ++ KA +L Sbjct: 470 TEAIEAAPQVLVAARIAKHYPATLTPFDKV--------KQVITAEVINEKAQKLAKAAGE 521 Query: 508 --LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565 L KEG N ++ S NR + ++ V V + + Sbjct: 522 AELAKLKEGSNANGFSSSIMVSRHKIAMANRAE----------LAPVMKADVSKLPAYVG 571 Query: 566 EN--GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN---KDLLDSVIAYLKSQYSVTV 618 + G+ YV++++T +K+ + QM N + L++ + YLK + V + Sbjct: 572 ADVPGMGYVIYRITKVVTPSNPDKNLREAMSKQMANVASQQDLNAYLNYLKKEAKVEI 629 >gi|85058653|ref|YP_454355.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Sodalis glossinidius str. 'morsitans'] gi|84779173|dbj|BAE73950.1| peptidyl-prolyl cis-trans isomerase D [Sodalis glossinidius str. 'morsitans'] Length = 617 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 130/635 (20%), Positives = 273/635 (42%), Gaps = 46/635 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ + L G V Q++ S + Sbjct: 1 MMDNLRAAANHVVLKIILGLIAFSFVLTGVGNYLIGGDGD-YAAKVNGQQISRSQLEQAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + +G + A + +++L L+ LDQ+ + +GL ++ I Sbjct: 60 QNERNRQQEAMGEQFSQLAANEGYMRQQVLSQLIDETLLDQYADKLGLAISDDQIKQAIF 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL- 179 F +D KF + F S + G++ D Y ++ + + + G+ + LL Sbjct: 120 AILAFRTED-KFDNAKFRSLIGNMGLSP----DQYATLMRKQLLTQQLIQGIGGTGFLLP 174 Query: 180 ---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 D+ + R + + A S+ + + YK+ Y +PE ++SYI Sbjct: 175 AETDRLLEVAVQTREARLAMFAIAALAAKQTASDDEIQASYNAYKNQYLSPEAFKVSYIP 234 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 D + K + E+QA Y+++ +++ P + + ++ +A++ + L++G F Sbjct: 235 MDAETMQTKTTVDEQEIQAWYDQHHDQFTVPGRKRYSIIQSKSENDANDWLKQLQQGADF 294 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ + G ++ D D + +L++KG + VI S G++I + Sbjct: 295 ASLAKAHSTDVVSAKNGG-DIGWMSDSDTLDELKQANLSQKGQLSGVIKSSVGFLIIRLD 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE--ISRREKIVS 412 +++P+ V ++A +++ EK + Y L++ ++ S D ++ E Sbjct: 354 DMQPAQVSPLSAVHDEVAAKVK----QEKAIDAYYALQQKVSDAASNDNETLASAETAAG 409 Query: 413 IDLPLVD-FAGKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QI 468 I D F+ DV AA+ Y +Q+LF + L + V DG+ +V +I Sbjct: 410 IKAQQTDWFSHDDVP----AALNYDAVKQVLF----QGSLLGSNSDVITVDGNRSFVIRI 461 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 E P R + LE+V V+++ K K E+ A + ++ ++ + L A+ Sbjct: 462 AEHRPERVQPLEDVRARVEQEVKRQKALEQARVDAEKALVALKQDKGT-----EALQAAG 516 Query: 529 LTTNQINRMDNENKFFGYDGISQ-VFS--GPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584 L+ + + D+ N+ D ++Q VF+ P + + + + + V P Sbjct: 517 LSFSAPQQFDSANQG---DPLAQTVFTLPQPPHGKSSYGMASNAQGDIVLIALDSVTPRT 573 Query: 585 ---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 Q++ +F+ L Q M D+++ L+++ + Sbjct: 574 LEEQQRKQFVDQLNQGMTGVAFDALLENLRAEAKI 608 >gi|332971823|gb|EGK10770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)] Length = 624 Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 116/552 (21%), Positives = 235/552 (42%), Gaps = 36/552 (6%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58 +E IR ++W +IFL++ P +I GL + ++ V +VG Q + + + IN Sbjct: 1 MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFTGSANANDVATVGDQTITRAEYQDAIN 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + EL + V + + L++++L L++ A L +G+ + Sbjct: 61 TRRNEL------LQNGVEASAINTNALNREVLKGLINRALLRNQSGQLGMHVSDKVINDL 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNL 177 + + P F ++ +FS+D F L ++G+ + + D Y + L+ + G+ + P + Sbjct: 115 LLQDPQFLDENGQFSNDRFAFSLQQQGMTKDQLFDQYRQQLNLMQLYAGVAQTAIYPESE 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + D E R V L S + ++ ++K++ + ++YI Sbjct: 175 INDLLA-LQLETRDVWVYRLPWEQYKDKVSVSAKEIENYYNEHKNDLNSVAMVDLAYIQL 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----LKKG 293 D K +++ E+QA+Y+ K Y + + Q++ K A++ Q LK+G Sbjct: 234 D-PAKVAVDKVTEKEIQAQYDAFKANYKGAANQKLSQILITGDK-AEQTIQQIQKRLKQG 291 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKKGDFTPVIHGSFG 347 + F LA++ + + G + PDV AD +I L K PV SFG Sbjct: 292 ESFAALAKQYSEDPISAAKGGDIGTFNPDVFGADGAKVAKAIEGLNKDQISAPV-KTSFG 350 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y + V+ + S +++++ Q + K + + + R+ E G +++I+++ Sbjct: 351 YQLFKVTEMSGDSVPSLASMREELVAQAQRQKREQLIADKITRINEMAIDGVGIEDIAQQ 410 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 E++ + G + A I F F D S ++ + +G+ +WVQ Sbjct: 411 EELTVQKIKNYTKVGNKTALGQPAVIDAA----FDDFALQDE-SVSASIKVNNGT-IWVQ 464 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG-----KNFRDIGK 522 P + L++ D+K K E+ + A + + +G NF+ +G Sbjct: 465 PTNYRPVKPLTLQQASADIKNILVKQKATEQALAAARNISKTVNDKGMQAVQANFKSLGN 524 Query: 523 -NLGASLLTTNQ 533 N LL+T++ Sbjct: 525 INRKNPLLSTDE 536 >gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591616|ref|ZP_01678864.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80] gi|121727851|ref|ZP_01680918.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52] gi|147674490|ref|YP_001217451.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395] gi|153820108|ref|ZP_01972775.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457] gi|153823840|ref|ZP_01976507.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33] gi|227082048|ref|YP_002810599.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2] gi|229507986|ref|ZP_04397491.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX 330286] gi|229511777|ref|ZP_04401256.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33] gi|229518914|ref|ZP_04408357.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9] gi|229607532|ref|YP_002878180.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236] gi|254849006|ref|ZP_05238356.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10] gi|255745323|ref|ZP_05419272.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101] gi|262156047|ref|ZP_06029167.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE 91/1] gi|262167880|ref|ZP_06035580.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27] gi|298498044|ref|ZP_07007851.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757] gi|9656453|gb|AAF95066.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546529|gb|EAX56737.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80] gi|121629887|gb|EAX62301.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52] gi|126509350|gb|EAZ71944.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457] gi|126518637|gb|EAZ75860.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33] gi|146316373|gb|ABQ20912.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395] gi|227009936|gb|ACP06148.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2] gi|227013816|gb|ACP10026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O395] gi|229343603|gb|EEO08578.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9] gi|229351742|gb|EEO16683.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33] gi|229355491|gb|EEO20412.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX 330286] gi|229370187|gb|ACQ60610.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236] gi|254844711|gb|EET23125.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10] gi|255737153|gb|EET92549.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101] gi|262023607|gb|EEY42308.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27] gi|262030225|gb|EEY48869.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE 91/1] gi|297542377|gb|EFH78427.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757] Length = 619 Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 106/515 (20%), Positives = 215/515 (41%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|308185912|ref|YP_003930043.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1] gi|308056422|gb|ADO08594.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1] Length = 622 Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 114/540 (21%), Positives = 239/540 (44%), Gaps = 51/540 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFS 54 M++ +R AS V KI L ++ V F++ G+ + L ++ + +S G+ + F+ Sbjct: 1 MMDNLRAASNHVVLKIILGLIIVSFVLTGVGNYLIGGNNDYAAKVNGQEISRGQLEQAFN 60 Query: 55 SFINSWKQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 S + +Q LG ++ GF+ + ++ L L+ A LD +I+++ L Sbjct: 61 SERSRQQQMLGDQFSQLASNDGFMQQ--------MRQQALSQLIDQALLDSYIKELHLSI 112 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 +V I F + KF + +++ + G + +Y + K LS ++ Sbjct: 113 SDDQVKQAIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVAN 171 Query: 171 G----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 ++ L+D + R + L+ + A ++ ++Q+++++K ++ A Sbjct: 172 TDFTLKGEASKLVD----LVSQQRDIRQATLDVNALMAKQTVTDDEISQYYQQHKTSFMA 227 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE R+SYIL D ++ + S ++QA Y+++K Y P+ + + +A+ Sbjct: 228 PEQFRVSYILMDAASMQQ--DASEADIQAWYDQHKADYSQPQRNRYSVIQTKTEADANAV 285 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 LK G F +A+ KS+ IS +G PD L ++ L +KG + Sbjct: 286 LAQLKGGANFADVAK--AKSIDPISARKGGDMGWLEPSTTPD-ELKNA--GLTEKGQMSG 340 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 VI S G+++ + +I+P EV+ +A +++ EK + + +L++ ++ S Sbjct: 341 VIKSSVGFLVVRLDDIQPEQVKPLDEVRSAVAAKVK----QEKGVDAFYKLQQKVSEAAS 396 Query: 401 MDE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTV 456 D ++ E+ + + +D + K Q +F + G++ + + Sbjct: 397 NDNESLAGAEQASGLKAKETGWFSQDTLPDALNFDAVK-QAIFNGGLVGQNGAPGNNSDI 455 Query: 457 ALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 DG +V +I E P + LE+V + K K ++ ++A++L+ + K GK Sbjct: 456 ITVDGDRAFVLRISEHKPEAVKPLEQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK 514 >gi|229523938|ref|ZP_04413343.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv. albensis VL426] gi|229337519|gb|EEO02536.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv. albensis VL426] Length = 619 Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 107/515 (20%), Positives = 215/515 (41%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDDIKAPVVKPCSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|297579436|ref|ZP_06941364.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385] gi|297537030|gb|EFH75863.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385] Length = 619 Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 107/515 (20%), Positives = 214/515 (41%), Gaps = 14/515 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L G PD + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAEEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 359 LDEIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 417 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 475 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 509 >gi|239948494|ref|ZP_04700247.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922770|gb|EER22794.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 524 Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 80/388 (20%), Positives = 175/388 (45%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L + + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIITFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P++ L +++ K ++ PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTSFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ + +V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGNQSFESVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D + ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYA-ELIEDKIIAENADSIFELSEGELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|34581133|ref|ZP_00142613.1| hypothetical protein [Rickettsia sibirica 246] gi|28262518|gb|EAA26022.1| unknown [Rickettsia sibirica 246] Length = 524 Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 81/388 (20%), Positives = 173/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ +IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ ++D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIKSFYVPKAMID 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|88860449|ref|ZP_01135087.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Pseudoalteromonas tunicata D2] gi|88817647|gb|EAR27464.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Pseudoalteromonas tunicata D2] Length = 633 Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 87/412 (21%), Positives = 176/412 (42%), Gaps = 25/412 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ S+ AKI L ++ + F + G+ L G +T V V QK+ ++F Sbjct: 1 MLEKIREGSQGLTAKIILGLVILSFALAGIGSYL----GQTTEKPVAVVNGQKISQTTFA 56 Query: 58 NSWKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + Q+ G N S+ + + ++D LV Q ++GL Sbjct: 57 RAYENERSRLEQQFGEYFNQIASDPTYMARVREGVIDRLVQQELQTQLANELGLRISDEA 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172 + EI P F+ +FS+D ++ + + + ++ ++R+ +V Sbjct: 117 IKEEIRTLPYFN-IGGQFSNDRYLQVIRQMNFQPDTFRNYLRTEMTRSQLVTAVAASDFA 175 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 P+ ++ + + R +DY++L V + ++ ++ + + + E + Sbjct: 176 LPNEMVT--ISQLQTQVRDLDYVLLTADQVSKDITVTEQEISDYYTLNQSQFLSQEQVSV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADE 285 Y+ + +++DE+ A Y NK +Y PE R V ++ ++ +A + Sbjct: 234 EYVELNAETLPVVKAVTDDEILALYNDNKAQYVEPERRRVAHILVDLGDDEAASEAKAQD 293 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVI 342 LK G F QLA+ + G + + D + ++ FSLA KGD + V+ Sbjct: 294 LLAKLKAGADFAQLAQSDSSDIVSAENGGDLDWIDRDMMDPAFEEAAFSLAAKGDISDVV 353 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FG+ I +++++ + VK ++ ++ +E E RL E Sbjct: 354 KSEFGFHIIKLTDLQAEQIKTLDMVKDELTARLEQDHKTEHFYELQTRLAEL 405 >gi|157964968|ref|YP_001499792.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5] gi|157844744|gb|ABV85245.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5] Length = 525 Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 82/388 (21%), Positives = 173/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ V++ F+ +G+ D L V + + F+ + Sbjct: 2 MLDNIRKTADSFIMRVLFVMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 62 SLEINAISKQTGTSLTDEEIAKLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 121 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG FV + D Sbjct: 122 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFVESFYVPKAMTD 181 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + ++ ++ P I P++ L +++ K + PE + SYI Sbjct: 182 NIVDYMAEKREVELVQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTAFEVPEKRSFSYIKA 241 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 242 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 299 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHG 344 G +++AE+ + ++ S++ E I D + ADSIF L++ P+ Sbjct: 300 DETAAGSSLVEIAEKYKLPIQNVHYISYA-ELIEDKIIAENADSIFELSEGELSYPIETE 358 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 359 DKSYLILVELKSIQPAKIPEFDAIKEQV 386 >gi|58584787|ref|YP_198360.1| parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419103|gb|AAW71118.1| Parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 602 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 133/632 (21%), Positives = 271/632 (42%), Gaps = 54/632 (8%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + + K+ V+L + G+ + L + V VG++ + + ++ IS Sbjct: 4 KNFFTKVTAVILTCLLIFTGVGNFLSDENKKEEVARVGKEVITLGEYKLLYQSYGKQIS- 62 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 G ++ E+ + + D +L+ L+ L I D+GL + I + F Sbjct: 63 --GSDISEEQVKRLKYD--LLNALIEQKLLFNLISDLGLVVGEESIKDHIRNTKYFQNDK 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-------DQA 182 KF + F L + E EY+ K+L MF+ + N + +Q Sbjct: 119 GKFDKEKFHEALNSLHMTEGEYVAKLEKILPAI----MFITSLFHDNYPVTFGEKIDEQI 174 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + + R V+ + + V + +P + VL +EK K ++ PEY+ YI Sbjct: 175 YKNRHQTRVVNIVKITQNAVTNVTEPDDRVLLDLYEKNKSHFYYPEYRTAQYISLGQKYF 234 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301 +I+IS+ E+ ++ + K + R + L+F ++EA+ A + ++ K F Q+ E Sbjct: 235 ANQIQISDREVDDIIKQQELK----DQRDIFNLIFYTKEEAETARKEFEEDKVSFEQIVE 290 Query: 302 EQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + GK+ L + + + +K+ +P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 291 KFGKTKLEETRINNITKDSLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVDSAHQIS 348 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + ++KK+I + K+ EKV + ++ + G +++ IS + + +D Sbjct: 349 NENLVDLKKNIKLVLTNQKSFEKVNDFINQVNYKIYNGATIEGISSEYNLPMQTIGPIDA 408 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G V + L+ +F ++ K + + D + + V+I +P + + E Sbjct: 409 SGKDQSGNSVES---SSDLVSFIFSREKD-QKGYFKGVGD-AVVSVKIVNIVPPKLQSFE 463 Query: 481 EVLTDVKKDW-------KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 E W K K +EV+++ K D+ K G L+ Q Sbjct: 464 EGKALAIDLWRNGFIKEKMFKIGQEVAARL-----------KEKADLKKTQGIELIKDQQ 512 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV--VFKVTNSKVGPVQEKDKFI 591 I+R + + + + I ++F+ P+++ + V K S G + D Sbjct: 513 IHRNEVGQQSYPFSFIEEIFNMKTIGSVTDPVQHNNEVIVGVLKEMYSSSGKLNTFDTGK 572 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + L + +I+YL+S+Y V V+ ++ Sbjct: 573 RVMI-----SLKEQLISYLESKYKVKVNHAIL 599 >gi|149928383|ref|ZP_01916623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] gi|149822918|gb|EDM82164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] Length = 633 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 114/490 (23%), Positives = 210/490 (42%), Gaps = 36/490 (7%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVS-------VGRQKVPFSSFINSWKQELGMISQKI 71 ++ FV L + ALF + G +TV + VG + F ++ + + Sbjct: 10 IMQFVLLLFIAPAFALFGLEGYNTVSADANALAIVGDYPISQEEFDQVKRERIEEARAQS 69 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + + S +++++LD LV L Q ++ L A + +IAR+PLF D K Sbjct: 70 GENFDPKVFESPEINRQLLDTLVLQYLLQQSVQKQYLTASDKALAEDIARTPLFQ-VDGK 128 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F + + LA G+ ++ + L+R V+ + L Q R Sbjct: 129 FDLETYKRELAARGLTPTQHEANVRFGLARNQVLDPVLRASFFPETLKTQLDDVQLAGRV 188 Query: 192 VDYIVLNNRHVPAIADPS--NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 V V N P +A+ S + + ++E K + AP+ + Y++ + KIE+S Sbjct: 189 VR--VKNIDLAPYLANVSITDEQVAAFYETNKAQFMAPQKADVEYVVLSPDTIKSKIEVS 246 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKG-KKFIQ 298 + ++ A YE+NK ++ +PE R ++ +KE A++ LK KF + Sbjct: 247 DADIAAYYEQNKARFSTPEERRARHILLDAEKEGASADDLKAAAEKVLAELKANPSKFAE 306 Query: 299 LAEE----QGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA++ G + LG F K +P+ A +FS KKG+ + ++ FGY I V Sbjct: 307 LAKQYSIDPGSANQGGDLGFFGKGAMVPEFEQA--VFS-QKKGELSGLVKSQFGYHIVEV 363 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + I+ + ++VK IA++++ K + + + R E + G S + ++ Sbjct: 364 TEIRGGEVQALEDVKTQIADEIKNQKMTAQFADAQGRFTELVYEGGQ----SFENVVKAL 419 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM-WVQIKESI 472 + F G + +++ +F D +K++T A+ G M +I Sbjct: 420 GVQAQTFNGLTQGAANAPEVLKDAKVIAEIFSSDSIENKNNTKAVQVGETMVSARIVNYT 479 Query: 473 PARDRKLEEV 482 A R LEE+ Sbjct: 480 AAAARPLEEM 489 >gi|148244746|ref|YP_001219440.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius okutanii HA] gi|146326573|dbj|BAF61716.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius okutanii HA] Length = 615 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 115/525 (21%), Positives = 241/525 (45%), Gaps = 47/525 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS---VGRQKVPFSSFI 57 ML IR ++ W++ + + ++ +PF ++G+S+ F+ + + V S V K F S Sbjct: 1 MLVSIRNKTKGWISYLIIGLIIIPFALFGISE-YFTGASNIKVASFDGVDISKEEFLSEF 59 Query: 58 NSWKQEL-----GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 N K+ L +K F+ L + IL+ +++ L+Q + E Sbjct: 60 NPQKRWLQKELDKKYDKKFDFI----------LKQSILNQMLNKHLLEQLSRKLSYETTT 109 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG- 171 + I + LF ++ +FS + + L G ++Y + L RT + + Sbjct: 110 SELNNIIRANDLFK-EEGRFSLEKYKKLLRLNGYTTEKYETIKLQELRRTQIKSNLLDSA 168 Query: 172 -MRPSNLLLDQAKRFYFENRSVDYIVL-NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 + PS LL + ++ + R YI++ + H+ + + +V +++ K + APE Sbjct: 169 FITPSQLL--RLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSV-KDFYDNKKSLFFAPEQ 225 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 +I +I ++E KKI++S++EL YE +E + + E R + ++ ++ A + Sbjct: 226 VKIEFIELSLNEIAKKIKVSDNELFNFYENEQENFTTEEERQAQHILLTDELTAQKVVTL 285 Query: 290 LKKGKKFIQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHG 344 L G F++LA ++ G +LG F++ +P+ +F++ K G+ + ++ Sbjct: 286 LDNGGDFVKLAKQYSQDSGSKDDAGNLGFFTRGIMVPE--FEKKVFAM-KSGEVSDLVKS 342 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FGY I ++NIK SF K++I + + I K ++KV + LA TS+++I Sbjct: 343 KFGYHIIKLNNIKVKTLKSFDIAKQEILD-LYIQKQAQKVFYNLTEQLASLAYETSLEKI 401 Query: 405 SRREKIVSIDLPLVDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + + + L + DF K +++ + + +L + G++ + + L Sbjct: 402 VDQ---MDLKLQVSDFFDKRNTQLNQKIVTTAFSDMVLNK--GENSEV-----LELSKDK 451 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 M ++++E + R + EV +++ T+ V + A +V Sbjct: 452 LMVIRVREKLVKRQKSFSEVKSEINTHLMTLLAKTFVDNLAKNIV 496 >gi|90410786|ref|ZP_01218801.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum 3TCK] gi|90328417|gb|EAS44715.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum 3TCK] Length = 623 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 106/485 (21%), Positives = 213/485 (43%), Gaps = 58/485 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M+E +R+ + K+ L ++ F+ G+ L GS + + ++ + F + Sbjct: 1 MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL--AGGSQPAAAKINGTEISQNEFEQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++ E + ++G + + E + + +LD +++ ++Q ++GL Sbjct: 59 YQNERNRMQSQLGDYFSTLLGDPEYVKQ--FRQSVLDRMINDVLIEQRATELGLRISDEH 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F +D KF +D + L R G ++ ++ + RT F+ ++ Sbjct: 117 IRKTITSMPEFQ-RDGKFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRT----QFLTAIQG 171 Query: 175 SNLLLDQA----KRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQ-----WFEKYKDNY 224 S+ LD ++ + R V + L+ +AD NA +T ++E+ + Sbjct: 172 SDFALDSELTALRKLEAQQRVVRSLTLD------LADFTKNATVTDEEAKVFYEQNPQMF 225 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 PE +++YI + +++S+++++A YE++K+KY S E R V ++ + D Sbjct: 226 TRPEQVKVAYIELSGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILV----QGD 281 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY--------------IPDVSLADSIF 330 A K + ++ + G S+++L S Y + D + D+ F Sbjct: 282 NA--DAKAKAEALKAELDAGADFSELALSSSDDTYSAKDGGKLDWFERGVMDPAFEDAAF 339 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 LA GD + V+ SFGY I + +K S F +V +I ++R +A+E + + Sbjct: 340 GLANSGDVSGVVKSSFGYHIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTK 399 Query: 391 LEE-FLALGTSMDEISRREKIVSIDLPLVDFAGK-DVKGKEVAAIPYKEQLLFRVFGKDD 448 L E + S+D+ + V+ + DF + D +G V A P Q LF ++D Sbjct: 400 LAETAFEMPDSLDDAA---AAVNATVHTTDFISQTDAQG--VLATPAVMQALFSAEVRED 454 Query: 449 PLSKD 453 L+ D Sbjct: 455 GLNSD 459 >gi|119945205|ref|YP_942885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] gi|119863809|gb|ABM03286.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] Length = 631 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/408 (23%), Positives = 188/408 (46%), Gaps = 21/408 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ AKI +VV+ + F + G+S L SG S V+V +++ ++ ++ Sbjct: 1 MLDKMREGAQGATAKIIIVVIILSFALAGVSSYLGG-SGISVAVTVNDEEISKATVDQAY 59 Query: 61 KQELGMISQKIG--FVVNSERARSVGLDKKI----LDNLVSGATLDQFIEDIGLEADHGR 114 + E + Q+ G F + A + ++KI + ++S L Q I+D+GL + Sbjct: 60 QNERTRLEQQYGEQFAL---LASTPNFNQKIRQQAMQTVISERLLTQAIKDMGLRIGDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V EI + F D F+++ ++S L R ++ + L+R ++ M +G Sbjct: 117 VKQEIRKMKEFQV-DGNFNNEQYLSLLRRASYTPAQFSQSIKQDLARRQLLTMVLGSEFI 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRIS 233 + + QA R + R + + A DP S ++ ++E ++ E + Sbjct: 176 LPMEVQQANRLQAQKRVARVLTVKASDF-ADKDPISEQEISTYYENNSQFFQTAEQVSVD 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQS--- 289 Y++ D ++ +S++EL+ Y+ + Y E R V L+ + A E Q+ Sbjct: 235 YVVLDGSLLADRVTLSSEELEKYYDMHASDYQRGEKRKVAHILLLGDNSAAKEKAQAILS 294 Query: 290 -LKKGKKFIQLAEEQGK-SLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L++G F QLA ++ + S S + G + + D + D+ F L K+ + ++ Sbjct: 295 ELEEGADFAQLAAQKSEDSYSAENNGELDWFERGVMDPAFDDAAFKLTKEAPLSNIVKSQ 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FGY I + +I+ S + EV + N + + + E ++RL E Sbjct: 355 FGYHIIKLVDIQESKKLPLSEVTAQVENAAKREEMNNLYYELHQRLSE 402 >gi|114777815|ref|ZP_01452746.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans PV-1] gi|114551806|gb|EAU54346.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans PV-1] Length = 636 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/490 (19%), Positives = 211/490 (43%), Gaps = 30/490 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +R ++ W+AKI L + + F++WG+ D F + + +V + + + F ++ Sbjct: 1 MLESMRSHAQGWIAKIILGGIALSFVLWGVGD-YFLGGKTEPIATVNGKAIGGAEFYQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++L +G +S S+G+ + L L++ + + + L A V + Sbjct: 60 ERQLNAYRSMLGKQYSSALMDSLGVKETTLQTLINRRIMLDTAQQLHLAAPASVVLATVH 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLL 179 P F F + + G + + ++ ++ D + V + S + Sbjct: 120 SDPSFQSA-RGFDVQRYHALTRNMGFSSAQDYENDLRLNIMVDALHKALVDSVHVSETEI 178 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ R + +V++ S+ W+E +K NY++P ++ + D Sbjct: 179 RDRFNHDYQQRVLAAVVVDPATQLNKVKVSDEQAKAWYEAHKQNYKSPLRINVNTVEIDP 238 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS---------- 289 + + +++ E++ +EK K ++ PE R + ++ + A EA ++ Sbjct: 239 RKLAEDVQVDESEVRKAFEKRKAEFSRPEERKAQHILIKVAENAPEAVRAAARKKIEAAQ 298 Query: 290 --LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F +A+ E G + S LG F + + + ++F++ KG + ++ Sbjct: 299 ARIKAGEDFSAVAKAVSEDGTASSGGELGWFKQGSMV-TAFDQAVFAM-DKGQVSDIVET 356 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FGY + + +I+P+ S+ +VK I + +A+E+ + + L+E L + E Sbjct: 357 PFGYHLIRLEDIRPAHEASYDDVKDGIRQDLVKARAAEEAYKLSQDLDEALGM-----ED 411 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPY--KEQLLFRVFGKDDPLSKDHTVALPDGS 462 S + S+DL ++ V E A+P ++ + F P V DG Sbjct: 412 SLKAAATSLDLKTINSGL--VSRDEALAVPVLSDPEIAAKAFST-LPGQAVEIVETSDGR 468 Query: 463 YMWVQIKESI 472 Y+ V++ E + Sbjct: 469 YVAVEVTERV 478 >gi|229587184|ref|YP_002845685.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5] gi|228022234|gb|ACP53942.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5] Length = 524 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/388 (20%), Positives = 172/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFVRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ +IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVNYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKNYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|152978448|ref|YP_001344077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus succinogenes 130Z] gi|150840171|gb|ABR74142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus succinogenes 130Z] Length = 624 Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/399 (22%), Positives = 182/399 (45%), Gaps = 43/399 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + A+ WV+K L + V F++ G+ L S S SS V V +++ +F + Sbjct: 2 LMEKLHHAANNWVSKAILGAIAVSFVVSGMYGYLGSSSDSS-AVKVNGEEISQQNFQQQY 60 Query: 61 KQELGMISQKIG--FVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G F S+ + GL + +L+ L+ L Q+ +++ + ++ Sbjct: 61 NNEFQRLEQQLGPQFAALSDTPEFTAGLRQTVLNRLIDQELLRQYGDELNIAVSDEQIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI R+P F D KFS++ + L ++ D Y + L + + + Sbjct: 121 EIVRTPEFQ-VDGKFSNETYQLFLRNNNLSS----DTYAQYLREALRLAQLQSALTDTAF 175 Query: 178 LLDQAK----RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPE 228 LL + + +F++R+V H+P A+ + +T+ ++ K + PE Sbjct: 176 LLPANQEAFAKGFFQSRAVRLA-----HLPLAAEIAKQTVTEEEIQNYYNSNKSAFTVPE 230 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++ Y+ EK +++++ E+Q Y+ +K + + + + N+KEA +A++ Sbjct: 231 LIKVQYLDLTQAAAEKTVKVTDVEIQQYYQDHKADFTTKGQERLAHIQLANEKEALDAYE 290 Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF- 338 +L+KG F LA+E+ G L ++ G KE+ + ++ + G + Sbjct: 291 ALQKGADFATLAKEKSNDKVSAVNGGDLGWLNTGDLPKEF-------EDAATILEVGHYS 343 Query: 339 TPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 TPV + G F I V K S + ++VK+ I +R Sbjct: 344 TPVNVDGQFH--IIQVLERKDSALLPLEQVKERITQAIR 380 >gi|312171578|emb|CBX79836.1| putative protease maturation protein [Erwinia amylovora ATCC BAA-2158] Length = 623 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 121/536 (22%), Positives = 230/536 (42%), Gaps = 43/536 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS KI L ++ + F++ G+ L SG V Q++ + F ++ Sbjct: 1 MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGD-YAAKVNGQEISRAQFERAF 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G V+ + ++ L L+ L Q+ +DIGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KF + ++ + G +Y + K L+ ++ G ++ Sbjct: 120 AIFTQPAFQTA-GKFDNAKYIIIINNMGFTADQYAEALRKQLTTQQLIESVTG----TDF 174 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +L D + R V + +N + A + + + ++++++ + + E R+S Sbjct: 175 VLGNEADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVS 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI D ++ + S ++Q+ YEK++ Y P+ + + EA LKKG Sbjct: 235 YIKMDAATMQQPV--SESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E KS IS +G E PD L + +L +KG + VI S G Sbjct: 293 GDFARLAKE--KSADPISARNGGDMGWLEPETTPD-ELKRA--ALKEKGQLSGVITSSVG 347 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405 +++A + + +P + EV DIAN+++ EK + +L++ ++ S D ++ Sbjct: 348 FIVARLDDTQPEKVKALSEVHDDIANKLK----QEKAVVAFYKLQQKVSDAASNDNESLA 403 Query: 406 RREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E+ + + G D +K K V + LL G++ + V D Sbjct: 404 SAEQAAGVKAVETGWFGHDNIPAELKFKAVQDAIFNGALL----GENAAPGSNSDVITVD 459 Query: 461 GSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 G +V +I E P + L++V + K K ++ ++A++L+ E K GK Sbjct: 460 GDRAFVLRISEHKPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGK 514 >gi|15893195|ref|NP_360909.1| hypothetical protein RC1272 [Rickettsia conorii str. Malish 7] gi|15620408|gb|AAL03810.1| unknown [Rickettsia conorii str. Malish 7] Length = 524 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/388 (20%), Positives = 171/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTTDSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|238650847|ref|YP_002916702.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str. Rustic] gi|238624945|gb|ACR47651.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str. Rustic] Length = 524 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/388 (20%), Positives = 171/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|254448800|ref|ZP_05062257.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma proteobacterium HTCC5015] gi|198261641|gb|EDY85929.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma proteobacterium HTCC5015] Length = 643 Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 129/580 (22%), Positives = 244/580 (42%), Gaps = 69/580 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR+ VA + + L + ++ L D + + G ++ ++V + V I + Sbjct: 1 MLLAIREKVTGAVALVIIAALGLFMVVPMLYDYVAGM-GDNSAITVDGESVS----IQQY 55 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA---------- 110 Q L Q++ E S G D L++ T DQFI+ + E Sbjct: 56 NQRLSQNRQRLTQAFGGELPESFG------DQLLAKRTTDQFIQQLLQEQATLNDGYAIS 109 Query: 111 --DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 D RV I +P F D +F + + +L G + Y TK V G F Sbjct: 110 DEDLVRV---IQEAPQFQ-TDGQFDPEAYKRQLRSIGYSPALYEQTMTKRF----VQGQF 161 Query: 169 VGGMRPSNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 G+ + + L+Q + R ++YI + + + S+A + +FE +++ + Sbjct: 162 QEGITQTAFVAPGQLEQMAALMHQERDIEYIAFSGEAFRSDIELSDAEIEAYFEDHREQF 221 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKE 282 PE + Y+ + + + +E++ +E+Q EY+ + +Y S E R+ ++F + Sbjct: 222 MHPEKVSVEYVAINFEDYKNGLEVTEEEVQQEYQAGVDSGRYTSQEERSASHILFAFDSD 281 Query: 283 ADE------------AFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIP 321 ADE + +G F LA+ EQG SL + G E+ Sbjct: 282 ADEDARAAVRSEAEQVLTQINEGGDFSALAKEHSDDPGSAEQGGSLGVVQKGVMVPEF-- 339 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 ++F+L ++G + ++ FGY I + P+ F E+ I ++ KA Sbjct: 340 ----EQAVFNLPEEGAVSDLVESQFGYHIIRLDEYTPAEAQPFDEISAKIRQELLDNKAR 395 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + D + LA +S + + +S++L D+ + G+ +A+ P + F Sbjct: 396 LRYDSDIDEMSN-LAFESS-GSLEPVAQALSLELQSSDWFTR-TSGEGIASDPVVREAAF 452 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + DD + T+ L +G + +++KE P ++ LEE +DV+ T AE++S+ Sbjct: 453 KTDILDDGYNS-GTLDLSNGDVVVLRVKEHEPRHEKTLEEARSDVESALMTKTVAEQLSA 511 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +Q + + G++ I + LG T + R + E Sbjct: 512 AQSQAAEAW-RSGESGEAIAERLGGEFNTALGVTRKNPEQ 550 >gi|170717232|ref|YP_001784350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus 2336] gi|168825361|gb|ACA30732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus 2336] Length = 618 Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 100/442 (22%), Positives = 200/442 (45%), Gaps = 48/442 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS V+KI ++ V F++ G++ +F + ++V V +++ F+ + Sbjct: 2 LMEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQY 60 Query: 61 KQELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E +S+ +G +E A S L ++LD L++ L Q+ +++ L +V Sbjct: 61 NNEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN-- 176 I SP+F + KF + ++ LA GI+ D Y + V+ G+ S+ Sbjct: 120 IVNSPMFQN-EGKFDNKIYQQILASSGISS----DTYAAYVREGLVLEQLQQGIANSDFQ 174 Query: 177 --LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L++ + +F+ R V VL+ + + Q+++ K N+ PE ++ Y Sbjct: 175 VPIQLNELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQY 234 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + ++K++IS+ E+ Y+ NK +Y + + ++ P ++EA + +L+ G+ Sbjct: 235 LDLTRAIADQKVKISDIEIAQYYQDNKAQYITKHLAHIQ---LPTEQEAQSVYANLQNGE 291 Query: 295 KFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F LA+ ++G L + G + +S +L G+++ + Sbjct: 292 DFSALAKLYSMDTLSAQKGGDLDWVVNGMMPLAF-------ESAVTLLNVGEYSQPVKVD 344 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMR---ITKA--------SEKVKEDYKRLEEF 394 Y I V ++K T +VK++IA ++R +T A +EK E+ + LEE Sbjct: 345 NAYHIIKVLDMK---TRELNDVKEEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEE- 400 Query: 395 LALGTSMDEISRREKIVSIDLP 416 A + EI + DLP Sbjct: 401 -AAKVAGLEIKETDYFSRQDLP 421 >gi|307822662|ref|ZP_07652893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter tundripaludum SV96] gi|307736266|gb|EFO07112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter tundripaludum SV96] Length = 620 Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 132/553 (23%), Positives = 247/553 (44%), Gaps = 73/553 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR+ ++ A L+++ VPF +WG+ + L + V SVG + F +N Sbjct: 1 MLTKIREKAQGAFAWGILIIICVPFALWGIQNYL-DTGEEAPVASVGDKDF-FQRDVNKA 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ Q G ++ + ++ L+K I D + L Q++ GL I Sbjct: 59 YEQYSQNLQ--GMTIDEQTLKAQALEKLIKDEV-----LLQYVHANGLVTTDDAAREFIQ 111 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D KF + + L + ++ E+++ L ++ F + S+ Sbjct: 112 SLPYFQ-VDGKFDDKRYKTMLNLQKMSSGEFVNRIKNAL----IMEQFQRSIIDSSFATK 166 Query: 181 QAKRFYF----ENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +F + R VDY+ + V +A+ P+ + ++++++D Y+ PE + YI Sbjct: 167 YDVESFFKIQNQQRDVDYVTV---AVQKLAEQPAEEEIAAYYQQHQDLYQTPEQVSVEYI 223 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------AFQS 289 + + K I +++D+L+A YE+ K++Y +PE R + ++F + DE A ++ Sbjct: 224 ELSLEDIAKTIAVTDDKLKAFYEEQKDQYTTPERRKISHILFAINDKVDEKTALEKALKA 283 Query: 290 LKK--GKKFIQLAEE------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 K+ K F +A E K+ D+ L + + + S D+ +L K G+ + Sbjct: 284 QKELANKDFAAVAAEVSDDKLTAKTGGDLGLFNAG---VMEKSFEDAASAL-KLGEVSNP 339 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + +FGY + V+ + P F+ VK + +TKA +K + + F G ++ Sbjct: 340 VKSAFGYHLIKVTELVPGEIKPFESVKNE------VTKAYQKAQAE----NAFYEAGETL 389 Query: 402 DEISRRE----KIVSIDLPLV----DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 E+S K V+ L + KD KG +AA E++ F ++ L + Sbjct: 390 TEMSYENPDNLKTVADALGVTIKKSALFTKD-KGDSIAA---DEKIRNAAF-TEEVLQGN 444 Query: 454 HTVALPDGSYMWVQIK--ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 ++ + G+ V ++ E PA R+ L+DVKKD V +S KA Q +E S Sbjct: 445 NSTPIELGTDRLVVLRMLEHKPAAARE----LSDVKKDIVAVL----LSDKAKQQAIETS 496 Query: 512 KEGKNFRDIGKNL 524 K+ K G+++ Sbjct: 497 KKIKTRLQAGESI 509 >gi|157826283|ref|YP_001494003.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str. Hartford] gi|157800241|gb|ABV75495.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str. Hartford] Length = 524 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 82/388 (21%), Positives = 171/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLAINAISKQTGTSLTDEEIAQLNIDNQILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F F + I+E++Y+ ++ + + +VG F+ N + D Sbjct: 121 ESPVFQNEQGAFDIKNFKAYFRNSYIDEEKYLLNFKEKALKNILVGSFIESFYVPNAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKVFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFELVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADSIFELSEGELSYPIEAE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPTKIPEFDTIKEQV 385 >gi|254450375|ref|ZP_05063812.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter antarcticus 238] gi|198264781|gb|EDY89051.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter antarcticus 238] Length = 619 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 87/430 (20%), Positives = 186/430 (43%), Gaps = 26/430 (6%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 I L +LFV + +G S +SG+ ++ +VG + + + + ++ + S + G Sbjct: 18 IILGLLFVGLMGFGAS----GLSGNLQSIGAVGDKTLSAQRYYQELQTQIRLRSAQEGRT 73 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 ++ A+ + + L +V+ +LD +GL + ++ P F G + F Sbjct: 74 ISFPEAQDAQVPSRALQIVVAERSLDNEAAILGLSVGDRVISEQVLADPNFRGFEGTFDR 133 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + L+R G+N +EY + +R + G G+ ++ + +F E R+ + Sbjct: 134 TTYRETLSRSGMNVREYETDLREGAARALLQGAVFTGVPDPSVFGEVVAQFIREGRTFTW 193 Query: 195 IVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 LN V + +PS L ++ + Y + E + + + + + + +EL Sbjct: 194 AALNAADVDITLPEPSEDDLQAHYDANPNLYTSLETRELRFAWIVPSMIQDDMPVDEEEL 253 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDISL 312 + EY++ +++ E R +E+LVF N + A A ++ G F QL ++G SL D+ Sbjct: 254 RLEYDERIDEFVQAERRLIERLVFANDEAAQTALDAINAGDTTFPQLVADRGLSLDDVDG 313 Query: 313 GSFSKEYIPDVSLA------DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 G DVSLA +++F+ ++ G + G + ++ + + +F++ Sbjct: 314 G--------DVSLAQLGAAGEAVFA-SETGGVSGPFPTDLGPALFRMNAVLAAQNTTFEQ 364 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 + +A +++ + LA G S+D + + +V +L D+ Sbjct: 365 ALPALRETQSAARAQRLIEDQIDPITNLLAGGASLDNLVAQTDMVLGELDFTSLTTDDIA 424 Query: 427 G----KEVAA 432 ++VAA Sbjct: 425 AYAAFRDVAA 434 >gi|113461230|ref|YP_719299.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT] gi|112823273|gb|ABI25362.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT] Length = 618 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 95/412 (23%), Positives = 192/412 (46%), Gaps = 32/412 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS V+KI ++ V F++ G++ +F + ++V V +++ F+ + Sbjct: 2 LMEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQY 60 Query: 61 KQELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E +S+ +G +E A S L ++LD L++ L Q+ +++ L +V Sbjct: 61 NNEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN-- 176 I SP+F + KF + ++ LA GI+ D Y + V+ G+ S+ Sbjct: 120 IVNSPMFQN-EGKFDNKIYQQILASSGISS----DTYAAYVREGLVLEQLQQGIANSDFQ 174 Query: 177 --LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L++ + +F+ R V VL+ + + Q+++ K N+ PE ++ Y Sbjct: 175 VPIQLNELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQY 234 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + ++K++IS+ E+ Y+ NK +Y + + ++ P ++EA + +L+ G+ Sbjct: 235 LDLTRAIADQKVKISDIEIAQYYQDNKAQYITKHLAHIQ---LPTEQEAQSVYANLQNGE 291 Query: 295 KFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+ +LS G + LA +S +L G+++ + Y I Sbjct: 292 DFAALAKLYSMDTLSAPKGGDLDWVVNGMMPLAFESAVTLLNVGEYSQPVKVDNAYHIIK 351 Query: 353 VSNIKPSFTVSFQEVKKDIANQMR---ITKA--------SEKVKEDYKRLEE 393 V ++K T +V+++IA ++R +T A +EK E+ + LEE Sbjct: 352 VLDMK---TRELNDVREEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEE 400 >gi|51244848|ref|YP_064732.1| peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila LSv54] gi|50875885|emb|CAG35725.1| related to peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila LSv54] Length = 634 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 185/392 (47%), Gaps = 29/392 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+I R +++ +I +VV+ + F+ WG+ + + S ++ VV+ +++ F ++ Sbjct: 5 MLQIFRNKAQSIFIQIIVVVIALVFIFWGVGANMMNKSEAAIVVN--GEEISLQQFQQAY 62 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q +S + G V A ++GL ++++ LV L Q + +G++ + I Sbjct: 63 DQAFQQLSDQFGGKVPKGMADALGLKDQVVNRLVQQELLRQGGKQMGVQLSAVEIQHAIQ 122 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSNL 177 P FH KD F + S LA ++ ++ I H ML+ + S+ Sbjct: 123 AMPQFH-KDGAFDVKSYNSILAANRLSPSKFEANIRH--DMLAEKTARAINEFSAHASDF 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYIL 236 +++ E SVD+ + + + L QWF++ KDNY ++PE K ++Y+ Sbjct: 180 EIEEFYGQANEGVSVDFASFSPKDFSSQVSVEEPALAQWFKEAKDNYKKSPEVK-LTYLA 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAF 287 +D ++KI + + Y+ + + E R ++F Q + +A Sbjct: 239 YDYATIQEKISLDEAAINNYYQSHLNTFRLAEKRHARHILFVVSPGDSDEKQQAQLKKAE 298 Query: 288 QSLKKGKK---FIQLAEE--QGKSLSDIS-LGSFSK-EYIPDVSLADSIFSLAKKGDFTP 340 LKK + F QLA + +G S S+ LG F++ E IP AD++F+L K GD + Sbjct: 299 NVLKKAQADEDFAQLARQFSEGPSKSEGGDLGFFARAEMIP--PFADAVFTL-KNGDISG 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 ++ +FGY I + I+ + T S +V++ IA Sbjct: 356 IVKTNFGYHIIKLEGIQEAKTKSLDKVREQIA 387 >gi|77165248|ref|YP_343773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|254434944|ref|ZP_05048452.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] gi|76883562|gb|ABA58243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|207091277|gb|EDZ68548.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] Length = 640 Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 79/412 (19%), Positives = 178/412 (43%), Gaps = 26/412 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR ++ A + + ++ +PF +WG+++ + G + SV +++ F +++ Sbjct: 1 MLEAIRNRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEALAASVNGEEISTREFRSAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED----IGLEADHGRVW 116 +Q++ F++ + + D N++ G + + D +GL + Sbjct: 60 LS----YTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDTAAKLGLGMSDSSLS 115 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + F G+ +F + + L +G+ Y L +V + Sbjct: 116 QVIRSNKAFQGESGQFDSQRYEAVLGSQGLTPVAYEARLRSALLSEQLVSTLRLSAFTTQ 175 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + Y ++ + + + S + Q+++ + + +R PE ++ Y+ Sbjct: 176 QEVEAIARLQQQKREIGYSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQVKVHYLR 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------- 286 I + L+ YE+++++Y PE R ++ + DEA Sbjct: 236 LTADSLATDIPLDEQTLRDFYEESEDQYRVPERRRASHILITVPPQGDEATRQQAQEKAE 295 Query: 287 --FQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F+ L++G+ F ++A+E G + LG F + + D + +++FSL + G + Sbjct: 296 AVFERLQQGEDFEEVAKEVSDDPGSAQKGGDLGFFGRGVM-DPAFEEAVFSLEETGALSE 354 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FGY I +++I+ F+ V +++A + R A E+ E + L+ Sbjct: 355 PVLSKFGYHIIKLTDIEAGEVKPFEAVSEELAQRYRRQIAEEQFYEQAEILD 406 >gi|85374123|ref|YP_458185.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594] gi|84787206|gb|ABC63388.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594] Length = 647 Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 110/486 (22%), Positives = 194/486 (39%), Gaps = 22/486 (4%) Query: 17 FLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 FL ++ + F +S VSG V VG QKV + + L + Q + Sbjct: 21 FLALIAIAFAGADVSSTGTFGGVSGGDRVAVVGEQKVGTAELSRAASNALDQLRQNDPTL 80 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 GL++ +++ L+ + +F G+ A V EI R P+F G D F Sbjct: 81 SMPAFIDQGGLER-VVETLLDRIAIAEFGRKYGMRAGDNLVNSEIRRIPVFRGADGNFDE 139 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + + +AR+G+ + D L V+ G F G P L A F R Sbjct: 140 ETYRAAIARQGLTDAVVRDDLGDGLIAQQVLVPGSF-GATIPDKLASRYAALFKERRRGA 198 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 ++ + P +P++A + ++ K +Y PE + I Y F + E Sbjct: 199 IALIPSTSFAPD-GEPTDAQVQAYYNANKGDYIRPERRVIRYATFGESAVADVGTPTAAE 257 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 + YE++ +Y + E RT+ QL+ P Q+ A + G +A E G L + Sbjct: 258 IANRYEQDASRYAASEERTLTQLIVPTQQAAQTFRDRVAGGASLETVAREAG--LEAQQI 315 Query: 313 GSFSK-EY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G + EY +A ++F A +G PV G+ + V ++ S + ++ Sbjct: 316 GPIDRSEYGAQASAQVAQAVFGTA-RGQVAPVARSGLGWHVVRVDDVNRIEGRSLAQARE 374 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLVDFAGKDVKGK 428 +I + + + E + +E+ A G S+ +++ V PL AG V G Sbjct: 375 EIVSTLTQERRRRAFNELAESIEDRFADGESLADVAAEVGAEVQTTRPLTG-AGI-VYGT 432 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 + P ++L R + + T A+P ++M + + P+ L E+ Sbjct: 433 QNEQAP---EILRRALATAFQMEEGEPQLTEAVPGETFMLFEASDITPSAPAPLAEIRDT 489 Query: 486 VKKDWK 491 V DWK Sbjct: 490 VVADWK 495 >gi|330446589|ref|ZP_08310241.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490780|dbj|GAA04738.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 630 Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 98/421 (23%), Positives = 190/421 (45%), Gaps = 45/421 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M+E +R+ + + KI L ++ + F+ G+ L SG+ V + V +++ F + Sbjct: 1 MMERLREGANSIWVKIILSLIILSFVFAGVGSYL--ASGNEQVAAKVNDKEISQREFEQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++ + + Q++G + N E + K +LD +V+ ++Q ++GL + Sbjct: 59 YQNQRNQMQQRLGDYFSTLMGNPEYVQQ--FRKSVLDRMVNDELIEQRATELGLGVSDAQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P F D F+++ + L R GI+ +++ + K + R F+ ++ Sbjct: 117 VKQAIIEMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQ----QFLSALQS 171 Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ------WFEKYKDNY 224 S+ L D+ ++ + R V + LN +AD +N V ++++ K+ + Sbjct: 172 SDFALNNEVDELRKLESQERVVRTLKLN------LADFTNKVTVTDEEAKAYYDENKNQF 225 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 P ++SYI I+I++ E + Y ++K KY + E R V ++ +A Sbjct: 226 TRPAQVKVSYIELSGKNLVNNIKITDQEAETYYNEHKSKYSTAEKRQVSHILVKGDSDAS 285 Query: 285 EA-----FQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKK 335 +A LK G F +A++ G F K + D + ++ FSLAK Sbjct: 286 KAKAEALLAELKGGANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEEAAFSLAKP 344 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 GD + ++ SFGY I + I+ F EVK I +++ ++V E + +L+ L Sbjct: 345 GDMSGLVKSSFGYHIILLDGIEEPKVKPFAEVKASIIAELQ----EQQVAEQFYKLQSKL 400 Query: 396 A 396 A Sbjct: 401 A 401 >gi|224368972|ref|YP_002603136.1| PpiD1 [Desulfobacterium autotrophicum HRM2] gi|223691689|gb|ACN14972.1| PpiD1 [Desulfobacterium autotrophicum HRM2] Length = 630 Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 84/389 (21%), Positives = 181/389 (46%), Gaps = 27/389 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+++R+ + +W+ KI L ++ + F+ G+ + V + Q + + + S+ Sbjct: 1 MLKLMRENTGSWIIKILLGLIVLVFVFLGMGS--IGAKRGNEVAMINDQPITLNEYQRSY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q+ G +N E + + + K+ LD L+ + + + +E + + + Sbjct: 59 QNIIEQMRQRFGDNLNDEILQMLQVKKQALDRLIDERLISGEADRLKVEVSNQELANSLL 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F K+ F + L+R ++ + + + L V + + S+ Sbjct: 119 DIPAFR-KNGVFDLATYKVVLSRNRMSPESFEAMQLQALREQKVRDLVFSTLSVSD---Q 174 Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +A+ +Y +++ +DY+V N IA + A LT ++E K+ Y++ + Y+ F Sbjct: 175 EARAWYTHSKTQVGIDYLVFNPVAYKDIAVDAKA-LTDFYESNKEKYKSEAELTVKYLEF 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292 V + + ++ IS+DE++A Y++N ++Y PE ++ ++ADEA + Sbjct: 234 AVKDYQDRVTISDDEIKAYYDENLDQYKVPEKVEARHILIRVPQDADEATVEAARNEAET 293 Query: 293 -------GKKFIQLAE--EQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 G+ F LA+ QG + D LG+F+++ + A++ FSLA G+ + + Sbjct: 294 IHAKAVGGEDFSLLAKTFSQGPTKDDGGYLGTFARDAMVK-PFAEAAFSLA-SGEISKPV 351 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 FG+ + V P+ T + +V +I Sbjct: 352 RTQFGWHVIKVEAKLPASTTALDKVAAEI 380 >gi|54309794|ref|YP_130814.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum SS9] gi|46914232|emb|CAG21012.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum SS9] Length = 623 Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 97/478 (20%), Positives = 209/478 (43%), Gaps = 44/478 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M+E +R+ + K+ L ++ F+ G+ L GS + + ++ + F + Sbjct: 1 MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL--AGGSQPAAAKINGTEISQNDFEQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++ E + ++G + + E + + +LD +++ ++Q ++GL Sbjct: 59 YQNERNRMQSQLGDYFSTLLGDPEYVKQ--FRQSVLDRMINDVLIEQRATELGLRISDEH 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F +D +F +D + L R G ++ ++ + RT F+ ++ Sbjct: 117 IRKTITSMPEFQ-RDGQFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRT----QFLTAIQG 171 Query: 175 SNLLLDQA----KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S+ LD ++ + R V + L+ A ++ ++E+ + P+ Sbjct: 172 SDFTLDSELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKAFYEQNPQMFTRPDQV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +++YI + +++S+++++A YE++K+KY S E R V ++ + D A Sbjct: 232 KVAYIELSGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILV----QGDNA--DA 285 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEY--------------IPDVSLADSIFSLAKKG 336 K + ++ + G ++++L S Y + D + D+ F LA G Sbjct: 286 KAKAEALKAELDAGADFAELALSSSDDTYSGKDGGKLDWFERGVMDPAFEDAAFGLANNG 345 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-L 395 D + V+ SFGY I + +K S F +V +I ++R +A+E + +L E Sbjct: 346 DISGVVKSSFGYHIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAF 405 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 + S+D+ + +V+ + DF + + + V A P Q LF ++D L+ D Sbjct: 406 EMPDSLDDAA---AVVNATVHTTDFISQ-IDAQGVLANPAVMQALFSAEVREDGLNSD 459 >gi|255067897|ref|ZP_05319752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC 29256] gi|255047885|gb|EET43349.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC 29256] Length = 616 Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 97/422 (22%), Positives = 187/422 (44%), Gaps = 43/422 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIG 72 A+I L ++ + F+ +G+S +V GS +V +G +K+ S N + ++L S G Sbjct: 12 AQILLGLIALTFVGFGVS--TVAVPGSDFIVKIGDEKISEYSLNNELQGEQLQGQSPSRG 69 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V S LV A L + + +G+E ++ I P FH ++ KF Sbjct: 70 AVFQS---------------LVQRAYLKEGAKLMGVEVSQEQLKQLIVDDPNFHDQNGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S +F + L++ + E +++ + + ++ + G S+ +Q + R + Sbjct: 115 SQQIFSNFLSQRHMTEDQFVADIRERYALQSLINLVQNGAIISDAQAEQLIKLTQATRDI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + N + +A L ++E +K +Y P+ ++ YI + K +S DE Sbjct: 175 RSVTFNPEAFVSQVKVDDAALKAYYEAHKKDYLIPQGVKLEYIALSAKDLADKQAVSEDE 234 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-------------FIQL 299 ++ +++ + + SP R + + FP ++ADE ++ K + F L Sbjct: 235 VKKAFDE-QAPHLSPR-REIAHIFFPVPQDADETVRAAIKAEADKVAAELKAKPADFADL 292 Query: 300 AEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ K + S LG SK+ L + FSL KG + V+ GY I V N Sbjct: 293 AKKYSKDTASASKGGNLGYLSKDGGLGTDLENVAFSLP-KGGISDVVQTPVGYDIVQVLN 351 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRRE--KIVS 412 I+ VS + K I +++ KA+ + ++L EE TS+ +++++ K+ S Sbjct: 352 IEDK--VSLEHEKARIEADLKLKKAASEFNSVKEKLSEEAFNTPTSLADVAKKTNLKLES 409 Query: 413 ID 414 +D Sbjct: 410 LD 411 >gi|158520285|ref|YP_001528155.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus oleovorans Hxd3] gi|158509111|gb|ABW66078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus oleovorans Hxd3] Length = 631 Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 132/664 (19%), Positives = 275/664 (41%), Gaps = 73/664 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ + + + K L ++ + F+ G+ + F T +V + V F ++ Sbjct: 1 MLQFMRQKASSIIIKGVLSLVILAFIFLGIGN--FREQQEVTAATVNEEIVTGREFQYTY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L Q+ G +N + + + L ++ ++ L+S + Q + +GL + I+ Sbjct: 59 QRLLDTYRQQFGGALNDDLLKMLNLKEQAMNQLISEKIILQQADKLGLNVSDSELAATIS 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP----SN 176 P F + +F + +RL + + K G+ V +R S Sbjct: 119 SIPAFQN-NGRFDKTRY-NRLLQSNRMTAAAFEQSQKQ-------GLLVDKLRTLITDSV 169 Query: 177 LLLDQAKRFYF--ENRSVDYIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L+ D R +F EN V + DP+ A + ++E++KD Y+ PE ++I+ Sbjct: 170 LVSDNEARQWFDWENARVKITAAVFAAEGRTDVDPAEAAVAAYYEEHKDQYKTPEKRKIT 229 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLK 291 Y+ +++++ +E+ Y+ N++ Y++ E ++ +++ADEA ++ + Sbjct: 230 YVRVAPARYLSEVKVTEEEIADFYQANQDFYWNEETVEARHILISLEQDADEARVEEARQ 289 Query: 292 KGKKFIQLAEEQGKSLSDIS--------------LGSFSKEYIPDVSLADSIFSLAKKGD 337 K + + GK ++ + LG+F++E + ++ FS+A G+ Sbjct: 290 KAADIYVMVTDGGKDFAETARQYSEGPSAGEGGYLGAFTREDMV-APFSEKAFSMA-PGE 347 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + FG+ I V + +FT EV+ DI Q+ KA E Y E Sbjct: 348 ISEPVRSQFGWHIIKVEKVNAAFTTPLDEVRADIEKQLLDQKAGE-----YAYEEALTLF 402 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 ++D S + S +L V + +A + ++ + F D + K+ + Sbjct: 403 DMALDTDSVEQAAASRNLTAVT-TDAITQNDTLADVEAGRTMVRQAF---DFVEKEISDV 458 Query: 458 LPDG-SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + +G ++ Q+ E +PA LE V V +D + E ++A + VLE K G+ Sbjct: 459 ITEGNTHFLFQVTEVMPAAVPPLENVQARVIEDLREQMRKEAAQAEA-ESVLEKVKAGQP 517 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVFSGPV------EMVKCFP----- 564 A ++ T FFG G + + + P ++ K P Sbjct: 518 LEAACAGTQAEIVATG----------FFGRTGAVPDIGNEPALSRAAFDLTKNQPVAPNV 567 Query: 565 IENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 +E Y V + + K E +D + LT ++ S + ++ + +T+ + Sbjct: 568 VEGRTGYYVVVLNDQKAPEASEFEEKRDAVVKRLTAQKKNEVFMSWLKTMRQESDITIDE 627 Query: 621 NLIQ 624 ++ Sbjct: 628 AFLR 631 >gi|312796419|ref|YP_004029341.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI 454] gi|312168194|emb|CBW75197.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia rhizoxinica HKI 454] Length = 638 Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 95/404 (23%), Positives = 175/404 (43%), Gaps = 27/404 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + LV+L P L + G+ S+ V SV +K+ + + + Sbjct: 1 MLDFFRNHKRLMM--FLLVILIAPGLGFVGVQGFRNFFDDSADVASVAGRKITRAEYEGA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA-DHGRVWGE 118 +++L Q +G +++ + + + ILD+LV L + ED+ L A D + E Sbjct: 59 MREQLDRARQVLGANFDAKAIDTPEMRRAILDSLVQQRVLAKATEDLHLSASDQAVLRAE 118 Query: 119 --IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK--MLSRTDVVGMFVGGMRP 174 I D + D + LA +G+ E D + + SR G+ P Sbjct: 119 QSIPAIAALRKPDGTYDVDQYKQLLAMQGMT-PELFDERVRYQLASRQLPDGIQASAFAP 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 +L Q ++R V ++L PS+ L Q+++ + D + PE + Y Sbjct: 178 KSLA-QQLASLSEQSREVQGLMLRATDYADKVQPSDVQLKQYYDAHHDAFAMPERASVEY 236 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVF----PNQKEADEAFQS 289 ++ ++ + S EL+ Y+ + K+ +P E+R L+ +Q E D+A Q Sbjct: 237 LMLSADALAQRAQPSEAELKKYYDDHAAKFKTPGEVRASHILIAVAASASQAERDKARQK 296 Query: 290 LKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDF 338 + ++F +LA++ + G + P + +D+ F L KK Sbjct: 297 AESILAQVTAHPEQFAKLAQQNSDDPGSKNKGGDLGFFGPGMMVKPFSDAAFKL-KKDQI 355 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + ++ FGY I V++IKP T F EVK IA +++ +A++ Sbjct: 356 SSIVQSDFGYHIIKVTDIKPEQTKPFDEVKATIATELKAEQATK 399 >gi|67459692|ref|YP_247316.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia felis URRWXCal2] gi|67005225|gb|AAY62151.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia felis URRWXCal2] Length = 524 Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 82/388 (21%), Positives = 172/388 (44%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGFKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVGYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F +F + ++E++Y+ ++ + + VG FV + D Sbjct: 121 ESPVFKNEQGIFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGSFVESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + ++ ++ P I+ P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPKDLQISTPTDQQLKVFYQDNKTVFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV----------FPNQKEADEAF 287 ++ K+ K+ I+ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSITQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D +A DSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAENVDSIFELSEGELSYPIEAE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|297569902|ref|YP_003691246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio alkaliphilus AHT2] gi|296925817|gb|ADH86627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio alkaliphilus AHT2] Length = 630 Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 88/407 (21%), Positives = 180/407 (44%), Gaps = 34/407 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++R+ +R+ + + +V++ + F++W + TV +V Q + F + Sbjct: 1 MLSLLRRKARSPLIQAAVVIIILVFILW--VPQMGGNGDPGTVATVNDQPISTREFQRRY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 LG + + SE ++GL +++L +V L Q GL + + Sbjct: 59 NDLLGQYRDQFEGAIPSELIEALGLREQVLSQMVQETLLLQSARKTGLPVSSEELQQAVQ 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F ++ +FS ++ LA ++ E+ L R ++ +G + S+ + Sbjct: 119 SMGEF-TENGQFSLQLYRQILAASRLSVHEFEAGLRTDLLRRKILEHLMGFAQVSDQ--E 175 Query: 181 QAKRFYFENRSV--DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 +RF+ ++ V Y+ L A DP++ + +F + YR P RI Y+LF Sbjct: 176 VRERFHRDHDQVRLSYLYLRADDFRAAQDPTSEEIEAYFAEKDHRYRTPPQVRIDYLLFP 235 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----------PNQKEADEAF 287 + E IE ++L A YE+N++++ +PE R ++ Q++ E Sbjct: 236 ADDTEMTIE--EEDLVAYYEQNRDRFDTPEQRRARHILIRSRSDAPEETRARQRQQAETV 293 Query: 288 QSL-KKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q L ++G+ F QLA E + LG F + + + L +++F++ + G+ + ++ Sbjct: 294 QELAREGQDFRQLALLYSEDRSAEDGGDLGFFRRGEMLE-PLEEAVFAM-EPGEISDIVE 351 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDI--------ANQMRITKASE 382 S G+ + + I+ T++ E + +I QM +A+E Sbjct: 352 TSLGFHVIKLEEIQEPQTITLAEAEAEIRREILRSRGRQMAFNRANE 398 >gi|222824176|ref|YP_002575750.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100] gi|222539398|gb|ACM64499.1| conserved hypothetical protein, putative peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100] Length = 492 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 97/390 (24%), Positives = 181/390 (46%), Gaps = 47/390 (12%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ V+ FV F+ WG D F+ S++V VG +K+ + F Sbjct: 1 MLTWMQHHKKYLVVTIWISVIAFVGAGFVGWGSYD--FNTDRSNSVAKVGDEKISYDEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q G SQ E+A+ GLD + ++ L+ L + + +GL + Sbjct: 59 LKYSQLFGYYSQLNNGNYTQEQAQKDGLDTQAINELIQEKLLLSYAKTLGLNVSEEEIAY 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY--IDHYTKMLSRTDVVGMFVGGMRPS 175 ++A +FH F +++ + LAR K Y I H +L + + + ++P+ Sbjct: 119 DLAHQKIFHNASGVFDKNLYYNLLARNNYTPKTYEKIIHDELLLKKINAILNL--QIKPN 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE-YKRISY 234 L + A ++ V I L+N+++ L Q +EK K+ Y+ Y+ +Y Sbjct: 177 ELDMFGASFLMQDSLKVQAIKLDNKNITM----DEKELKQTWEKNKELYKTQRSYELATY 232 Query: 235 ILF-DVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQ---------LVFPNQKE 282 L D+ I+I + E+QA YE+NK Y F+ +I ++EQ + + + Sbjct: 233 FLNPDI------IKIDDKEIQAYYEENKNDYKDFAGKILSLEQSKDKVIKDLKLSKLKLK 286 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 A+E++ +L+K +L ++ ++SD + Y P ++ AK+ DF Sbjct: 287 ANESYVALRKN----ELNFDKNITISDADV------YYPLENIQK-----AKENDFIKPF 331 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 GY+IA V I P T++F++ K +++ Sbjct: 332 KFENGYMIAKVIKINPIQTMTFEQAKNEVS 361 >gi|157829104|ref|YP_001495346.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933829|ref|YP_001650618.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str. Iowa] gi|157801585|gb|ABV76838.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908916|gb|ABY73212.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str. Iowa] Length = 524 Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/388 (20%), Positives = 170/388 (43%), Gaps = 20/388 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLNNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAF 287 ++ K+ K+ ++ DEL Y +NK+++ V++ + N + A + Sbjct: 241 NI--KDLKVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D AD+IF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAESADNIFELSEGELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDI 371 Y+I + +I+P+ F +K+ + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQV 385 >gi|332290245|ref|YP_004421097.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179] gi|330433141|gb|AEC18200.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179] Length = 621 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 145/309 (46%), Gaps = 13/309 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFIN 58 M+E +R + + V K+ + V+ + F++ G++ L S +S TV V + F Sbjct: 1 MMEKLRGYTHSMVWKVLMSVIAISFVLSGVAGYLISRQNTSAATVNGVEISQRLFQQQYQ 60 Query: 59 SWKQELGM-ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S Q+L M + K V +S + GL +LD L+ L Q+ +++GL + Sbjct: 61 SQYQQLAMQMGDKFAAVADSAEFTN-GLRHSVLDRLIDDELLRQYSKELGLGVGDEAIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F KD +F + V+ LA + D Y +++ + V+ +G + S+ Sbjct: 120 AIVMNPAFQ-KDGQFDNAVYQQLLANNNLTP----DQYAEIVRQDLVLSQLMGSLLASDF 174 Query: 178 LLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L + Q + +F+ RSV + A S+ + +++ +K + PE ++ Sbjct: 175 LTEAQQQQFVKLFFQKRSVRLATFPVADLAAKQTISDQEIEKYYNDHKAAFATPELVKVQ 234 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + + K +++S+ E+ Y+ NK ++ + + + Q EAD+ + L++G Sbjct: 235 YIDVNKDKLAKDLQVSDVEVAQYYQDNKSQFMGQAKQHIAHIQVNTQAEADDIYNKLQQG 294 Query: 294 KKFIQLAEE 302 F +LA++ Sbjct: 295 ADFAELAKK 303 >gi|254499150|ref|ZP_05111837.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351629|gb|EET10477.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 624 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 111/513 (21%), Positives = 219/513 (42%), Gaps = 45/513 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S +++ V+V + + +F ++ Sbjct: 1 MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYFQSHQTTNSKVTVNGEPLTEQAFEINY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ GM Q I + + + L ++LD +V+ + Q G + I Sbjct: 61 RRARGM--QDIAQMTAEDEKK---LQNQVLDQMVTNEVMVQAAHTNGFNVSLNQANAAIL 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D FS + + L+ + + + + + F+G S L D Sbjct: 116 NIPQFQ-EDGHFSSEKYQQALSAALFTQLSFQNEVKQGMLLNQQRFAFIGS---SFALPD 171 Query: 181 QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + +RF Y +NR DY+ ++ A S + ++++++ + APE + Y+L Sbjct: 172 EIERFVKLYMQNRDYDYVTISAARFEKDAHVSPEAIADYYKQHQKEFMAPEQVSLDYVLL 231 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADE 285 ++ +K I+IS+D+++ Y +N+ Y +P V ++F QK+AD+ Sbjct: 232 SMNNIKKHIKISDDDIKRFYNENQNNYLTPAQWQVAHILFATPEDVSKDELDQIQKKADD 291 Query: 286 AFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----DSIFS-LAKKGDFT 339 A+ +L+K +F +L +LSD L K +P ++ D I S L K G+ + Sbjct: 292 AYAALQKDPAQFEKLV----TTLSDDKLSVAEKGALPWITAGQNDYDKILSNLTKPGEIS 347 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALG 398 GY I + KP S EV+ I Q+ A + ++L + Sbjct: 348 APEKTKHGYEIFKLIAYKPVTMKSLAEVETTIKEQLLAEMAQTQYAHALEQLSDLSYQSP 407 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL---SKDHT 455 S++ +S K+ P+ AG G + K QL+ D L + Sbjct: 408 DSLNPVSDAMKLKIEKTPVFSRAG----GNDAIT---KNQLVINAAFSHDVLELGNNSEP 460 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 V L + S + V++ E +++ LE V + K Sbjct: 461 VQLDNDSVVVVRVNEHRAEKEQSLEAVQAQINK 493 >gi|285808228|gb|ADC35762.1| peptidyl-prolyl [uncultured bacterium 293] Length = 640 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 138/654 (21%), Positives = 263/654 (40%), Gaps = 64/654 (9%) Query: 10 RTWVAKIFLVVLFVPFLIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 R W+ + L V+ L++ + A V VG++K+ F ++ ++ + Sbjct: 10 REWLKYMLLAVVLAFILLYIPAFQAGPGGGPGEEVARVGQEKITAGEFDRAFSRQRDALR 69 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 ++ V+ +G+ +++L+ L+ G + Q +GL D V +I R + + Sbjct: 70 EQ---GVDPAMLEQLGVREEVLNGLIDGKLIVQEARRLGLAVDDEAVAAQIHRE--YQSR 124 Query: 129 DNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 +F D RLA +GI+E E + + L + + G+ S+ ++ R Sbjct: 125 GGEFVGTDEIRRRLALQGISEDEKAEQVREQLLVQRLYALVTDGVHVSDQDAEKEFRRSS 184 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 E V+Y+ ++ A ++ + F+ ++ YR PE + I Y+L D K+++ Sbjct: 185 EKVKVEYVAVDAAPFATRATATDEEVAARFQSRREAYRIPERRVIGYLLLDAMALSKEVK 244 Query: 248 ISNDELQAEYEKNKEKYFSP--------EIRTVEQLVFPNQKEADEA-------FQSLKK 292 +S+ +++ YE ++ ++ P E++ + P +EA +K Sbjct: 245 VSDVDIRTYYEDHETQFQQPDEACARHIEVKVKQTADAPAGHTEEEARVLAQKLLDQVKG 304 Query: 293 GKKFIQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F ++A E+ G S LG E + P+ L +IF+L + + G Sbjct: 305 GADFAEVAKKSSEDPGTSSRGGDLGCGGPETWGPE--LGQAIFTLPVNQVSDLIRTQAHG 362 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + I V + + VK+ I + + K E +E ++ LA G S+ Sbjct: 363 FHIVQVLSRRQQGVQPLDSVKEGIRHILVQGKTRELAEERSSKISAALAKGESL------ 416 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS---YM 464 EK + V +G+ V + + LL R F L + + P G+ ++ Sbjct: 417 EKAGQLYGLTVQKGAPIARGQRVPPLDSPD-LLARAF----TLKRGESNPEPFGTAQGWL 471 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++ + + R +L EV V+ D + K KA Q L EG L Sbjct: 472 FIDVLDIQAPRLPELAEVQDRVRADLQDEKARALARDKAVQ--LRAQAEGAGLDKAAVAL 529 Query: 525 GASLL---TTNQINRMDNENKFFGYDGISQ-----VFSGPVE-MVKCFPIENGLSYVVFK 575 G L+ TT + R + FG G +Q FS PV+ + + P G Y V + Sbjct: 530 GPGLVRKETTTPVTR----GQSFGDLGTNQALEDAAFSLPVQGLSEALPSPGG--YAVLR 583 Query: 576 V-TNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 V + P +K + +S L Q + L + I + ++ + ++R Sbjct: 584 VLEKTPFDPAAFAAQKAEVVSKLEQQQKRQLFQAYIERARDRFPIERRPEALRR 637 >gi|220934121|ref|YP_002513020.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. HL-EbGR7] gi|219995431|gb|ACL72033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. HL-EbGR7] Length = 633 Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 101/515 (19%), Positives = 215/515 (41%), Gaps = 48/515 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + W+A + ++++ +PF +WGL++ F + + V V ++P ++ + Sbjct: 1 MLQKIRDKATGWIAYVIVILISIPFALWGLNE-YFGGAPAQVVAEVNGVEIPARAYQQEF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+ ++Q G + S + + L L+ + Q ED G V EI Sbjct: 60 QQQRQQLAQMFGGRIPSGAVDENMMRENALQTLIRRELVAQMAEDKGFRISASAVASEIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178 P F +D F + + + +++ + +++ ++ F G + S L Sbjct: 120 AVPGFQ-RDGVFDPERYRQIME----SQRRSPAEFEARVAQAMLLEQFQSGYQRSAFLPE 174 Query: 179 --LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R E R V S + ++ ++ + ++ PE R++Y+L Sbjct: 175 AMVEDFVRLRHERRQVSVHRFPAEAYAERVQVSEDDIAAFYAEHGEQFQTPERLRLAYLL 234 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------ 284 D +++ ++ D+L+ EYE+ +++ PE R ++ + AD Sbjct: 235 LDDATLAEQVSVTEDDLRREYEQRSDRFTQPEERRASHILIRVEPGADADTVAAAEARAR 294 Query: 285 ---------EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 E F + + +AE G L I+ G D +L +F++ + Sbjct: 295 EARARIEAGEDFAEVARAVSDDPMAETAGGDLGYIARGDI------DPTLEGVLFTM-RV 347 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL--EE 393 GD + + G I +++I+ + F+ V+ ++ + R + E +RL E Sbjct: 348 GDVSQPVRTGLGLQIVRLTDIEAARREPFEAVRDEVEAEFRSRRVEGLHIELTERLLTES 407 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 F GT + + + + D+ + + +A+ P ++L F ++ ++ Sbjct: 408 FEQPGT----LEPAAEATGLSIAFTDWFTRQGADEGIASEP---EVLRVAFSQEVRQGRN 460 Query: 454 H-TVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + LPDG + V++ E PA R LEEV +++ Sbjct: 461 SDLIDLPDGRVVVVRLHEYEPAAPRPLEEVAEEIR 495 >gi|83644983|ref|YP_433418.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] gi|83633026|gb|ABC28993.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] Length = 628 Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 34/402 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ +AK+ + ++ + F +G+ + +SG V SV + + S F + Sbjct: 1 MLQNIRDNAQGVIAKVIVGLIVMTFAFFGVESIVGGLSGEPEVASVNGEPITKSQFERKF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ +G + + L K LD ++ Q + G + I Sbjct: 61 ERNRLQAIAGMGENYDPSKIDENKLRKTTLDEFITREVQLQAAREAGFAVSDATINNFIT 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178 + P+ KD K+ ++ F+ L R G+ E+ K LS +VG G+ ++ + Sbjct: 121 QWPMAQ-KDGKYDNNQFMEALRRIGMRPMEF----RKELSDELLVGQLQSGIAQTSFVIG 175 Query: 179 --LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L++ R + RS Y LN V + S+A +++ KD + PE ++YI Sbjct: 176 EELNELLRMERQTRSFSYYRLNAEDVAKDIEISDAEAEEYYNSNKDEFILPERIIVNYIE 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAF 287 + E+S++E+ YE+ K+++ E R ++ + A E Sbjct: 236 LTRDALVGRAEVSDEEVSERYEQEKKEFLPSEQRRASHILIETSDDVSDEQALAKAQEVE 295 Query: 288 QSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 Q LK G F LA+E G L G+F + + + +FS+ GD Sbjct: 296 QKLKDGGDFAALAKEFSSDLGSANDGGDLGYAQKGAFVEPF------EEKLFSM-NVGDI 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + +GY I ++++K S +E K I +++ KA Sbjct: 349 SEPVKTEYGYHIIKLNDVKAVEMPSLEESKDRIVKELQEQKA 390 >gi|269468957|gb|EEZ80538.1| Parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster bacterium] Length = 613 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 107/506 (21%), Positives = 224/506 (44%), Gaps = 47/506 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR ++ W+A + + ++ VPF ++G+++ F+ + + V S+ ++ F+N + Sbjct: 1 MLSSIRNKTKGWLAYLIVGLITVPFALFGINE-YFTGTSNIIVASIDGDEISKEDFLNEF 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + Q++ SER + L + ++ ++V+ L QF + + + Sbjct: 60 NPQKRRLQQRL-----SERYDTEFDAVLKQSVMRDMVNRRLLSQFSDGLDYATTSVELQA 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS 175 I + LF D KFS D + L G + EY K L+++ + F+ + PS Sbjct: 115 MIQSNDLFQ-VDGKFSIDTYQKLLRLNGYSTAEYESIKLKELTQSQIKYNFLDSAFITPS 173 Query: 176 NL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 L L DQ ++F YI ++ + + + ++ K ++ P+ Sbjct: 174 ALKNLQALNDQQRKF-------SYIQIDADNYLDKVKVNVKSVKDFYNNQKASFFDPQKV 226 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +I ++ + + K I+I++DEL YE K+++ + R + ++ Q+ A + + Sbjct: 227 KIDFVELSLEKIAKNIKINDDELFNFYEDEKDRFTTEGERKAQHILVQTQETAKKVVGLI 286 Query: 291 KKGKKFIQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGS 345 G F +LA E+ G LG F+K +P+ +F + ++G+ + + Sbjct: 287 NAGGDFAKLAKEYSEDTGSKDDAGDLGFFTKGVMVPE--FETKVFGM-QEGEVSGAVKSE 343 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FGY I ++ IKP SF+ + ++ + + + + +L LA S++E+S Sbjct: 344 FGYHIIKLNKIKPGSVKSFESARSELTKLYTQNQVQKSLYDLTDQLAN-LAYEVSLEEVS 402 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT---VALPDGS 462 + +V + F K+ Y+++ + F D L+K + L Sbjct: 403 DQMNLV---VNTTQFFAKNTN-------DYEKKFVDAAFS-DVVLNKGENSEIIELSKDK 451 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKK 488 ++ V++KE R + +EV ++ K Sbjct: 452 FIVVRLKEKTVKRQKTFDEVKDEINK 477 >gi|226953081|ref|ZP_03823545.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. ATCC 27244] gi|226836173|gb|EEH68556.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. ATCC 27244] Length = 623 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 135/653 (20%), Positives = 257/653 (39%), Gaps = 69/653 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVP---FSSFI 57 +E R + W+ K+ LV+ P + G+ + FS + V SV Q + S I Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGI-EGYFSGGNKADVAKSVNGQDISNKELESAI 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++K + + Q ++N + ++ +D LV+ + L Q E +G+ ++ Sbjct: 60 KNYKDQYLALVQGDESLLNLS-----AIQERAMDALVARSLLSQQAEKLGISLSDAQLEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P F ++ +FS ++ + L G+ + I DH KM+S + + V Sbjct: 115 MLAQQPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLIDNALV--- 170 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S L Q E R++ + S +T ++ K+K+ ++ + Sbjct: 171 --SKSDLQQLANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDV 228 Query: 233 SYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 Y++ E+ + +++ +LQ Y EK R V+ ++ + D A Q L Sbjct: 229 DYVVLSPALLEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLI 288 Query: 291 -------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPV 341 + G F Q A + + S + G Y P AD + + K G + Sbjct: 289 NDVYAKIQSGMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKP 348 Query: 342 IHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + +GY I V P+ + SF+ K + ++ TKA+ + L E + S Sbjct: 349 VKTQYGYHIIEVQ--VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDS 406 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG---KDDPLSKDHTVA 457 ++ +++ K ++ + K + I + ++F K+ + + Sbjct: 407 LEVVAQEVKAARVE------SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQ 460 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 L +G +W+++++ PA + L EV T+VK K E+ + KA Q +K Sbjct: 461 LANGDSIWIKVRDYHPAGIKPLSEVTTEVK-----AKVVEQKAYKAAQ-----AKMASIL 510 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-----VFSGPVE------MVKCFPIE 566 D A ++ +Q+N +N F G+ + FS P + Sbjct: 511 ADFKTQPAAQVVAKSQVN-FENAGTFARSHGLKRAIERAAFSIPAPSKEGMWSATTAKLP 569 Query: 567 NGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 N L V +S V P +E + Q + +L+ AYLKSQ + Sbjct: 570 NELVIVAVSNVDSSVASSLPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADI 622 >gi|291616553|ref|YP_003519295.1| PpiD [Pantoea ananatis LMG 20103] gi|291151583|gb|ADD76167.1| PpiD [Pantoea ananatis LMG 20103] Length = 646 Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 124/560 (22%), Positives = 247/560 (44%), Gaps = 51/560 (9%) Query: 1 MLEIIRKASRTWVAKI--------FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP 52 M++ +R AS V KI F++ +LI G +D V+G +S + Sbjct: 24 MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLIGGNNDYAAKVNGQE--ISRAQLDQA 81 Query: 53 FSSFINSWKQELG-MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111 F+S N +Q LG SQ G ++ R ++ L L+ A LD +I+D+ + Sbjct: 82 FNSERNRQQQMLGDQFSQLAGNDGYMQQMR-----QQALSQLIDQALLDSYIKDLHIAIS 136 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 +V I F + KF + + + + G +Y + K L+ ++ Sbjct: 137 DDQVKQAIFNQAAFQ-TNGKFDNAKYNAMIGNMGFTADQYAEALRKQLATQQLINAIANT 195 Query: 172 ----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 ++ L+D + R + L+ + A ++ + Q+++++K+++ AP Sbjct: 196 DFMLKNETSKLVD----LVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKNSFMAP 251 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E R+SYI D ++ S+ ++QA Y+++K Y P+ + + +A+ Sbjct: 252 EQFRVSYIKLDAAGMQEN--ASDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADANAIL 309 Query: 288 QSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 LK G F +LA+ KS+ IS +G PD L ++ L +KG + V Sbjct: 310 AQLKSGADFAELAKT--KSIDPISARKGGDMGWLEPSTTPD-ELKNA--GLKEKGQLSGV 364 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 I S G++IA + +I P +V+ ++A++++ EK + + +L++ ++ S Sbjct: 365 IKSSVGFLIARLDDIIPEQVKPLADVRSEVADEVK----QEKAVDAFYKLQQKVSEAASN 420 Query: 402 DE--ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVA 457 D ++ E+ + + +D K++ K Q +F + G++ + + Sbjct: 421 DNESLAGAEQASGMKATETGWFSRDDVPKDLDFDAVK-QAIFNGGLVGQNGAPGNNSDII 479 Query: 458 LPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 DG +V +I E P LE+V + K K ++ ++A++L+ + K GK Sbjct: 480 SVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADL-KAGK- 537 Query: 517 FRDIGKNLGASLLTTNQINR 536 +D+ K G +L + ++R Sbjct: 538 -QDVLKAAGLTLSASKTVDR 556 >gi|116747610|ref|YP_844297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] gi|116696674|gb|ABK15862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] Length = 632 Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/407 (18%), Positives = 178/407 (43%), Gaps = 21/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML + R+ S++W+ K L+++ + F+ WG A + + VV + + + + N + Sbjct: 1 MLNLFREHSKSWMIKALLILVAIVFVWWG--GATYQSKSDTAVVQIDDEFISERDYYNVY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + ++G + + + L ++LD L++ + + ++GL A V I Sbjct: 59 EKMVTRYRTQLGKAWSEKLVEEMNLKGQVLDMLINRYLVSKAARELGLSASTEEVRRRIL 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F D +F + L +E + + + + ++ ++ + ++ + Sbjct: 119 EYPVFLN-DGRFDQLTYERVLRQERLTPEGFEKDIAESIAYERLLNFIKRQVVVTDEEVT 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + + Y + + + ++F+ +++ Y PE +R S +L+ Sbjct: 178 ADYRTNYGQVQIAYALFDPKSFEDKVTVDEQGAQEYFQNHRERYMEPEKRRFSLVLYKPE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 + ++ D+++ Y+ + +Y + Q++F + EA++ Sbjct: 238 AYMDQAGVTGDDMRRYYDDHISEYRHEQQVRARQILFRLKEDAAEEEIAKARSEAEKVLA 297 Query: 289 SLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +KGK F +LA + + + LG+F++ + + +D+ F++ KKG+ + ++ Sbjct: 298 EARKGKDFAELARKYSQDTATAKNGGDLGAFTRGQMLE-PFSDAAFAM-KKGEISDLVET 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I V I P T SF+E + I ++ KA E E ++L Sbjct: 356 PDGFHIIKVEEIIPEKTTSFEEARSGIEQAVKRQKAREAAYEKARKL 402 >gi|254507758|ref|ZP_05119889.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16] gi|219549283|gb|EED26277.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16] Length = 364 Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/351 (21%), Positives = 157/351 (44%), Gaps = 12/351 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + +G+ T VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAGN-TAAKVGNVEIDRGEFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ + K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAASLGLRVSDAQVRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ S L R G + + ++ + L R ++ Sbjct: 120 MIVEMPQFQ-VDGKFDQEIYQSSLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V + L A + S+ + ++E+ + Y PE +++YI Sbjct: 179 EVEAQAKLLTQTREVQTLSLPLDDFAAKVELSDDEIQGYYEQNSERYTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I +S+++ + +E++ +KY S E R V ++ +Q +A L G Sbjct: 239 SAQKLKDAITVSDEDAKKYFEEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGTD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 F LAEE+ G + SLG ++ + D + ++ F+L GD T ++ Sbjct: 299 FAALAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKNVGDVTGLV 348 >gi|327484462|gb|AEA78869.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio cholerae LMA3894-4] Length = 616 Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 105/515 (20%), Positives = 215/515 (41%), Gaps = 17/515 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L +SG + + ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL--ISGGNN--AAANAEISRGDFEQAY 56 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 57 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 116 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 117 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 176 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 235 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 236 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 295 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E+ + L + G PD + + F+L +KG + ++ FGY I Sbjct: 296 FATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIR 355 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +IK + EV++ I ++ +A + LE+ +A S D + K +S Sbjct: 356 LDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEK-MAFEHS-DSLDEAAKAIS 413 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + DF + + EV P Q L K+D L+ + P+ + + Sbjct: 414 ATVVHTDFISAE-QAPEVLTTPAVLQALKSPEVKEDGLNSEVIEVAPEHVVVVRVEEFR- 471 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P L+EV + V + +K ++ NQLV Sbjct: 472 PETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLV 506 >gi|54294744|ref|YP_127159.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens] gi|53754576|emb|CAH16060.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens] Length = 624 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 115/519 (22%), Positives = 225/519 (43%), Gaps = 57/519 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + Q+L ++ A L ++L+ +++ Q G E + Sbjct: 61 RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P F +D FS + L+ + + + + F+G S Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGT---S 166 Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D+ KRF Y + R DY+ + + A S + ++ ++ + E + Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280 Y+L +H+ + +I+IS DE+++ YE+NK Y +P V ++F P + Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----DSIFS-LAKK 335 ++ADE + LKK + ++ S SD L +K +P ++ D + S L + Sbjct: 287 QKADEVYNDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRP 343 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + + +GY I + KP T S QEV+ I +Q+ A K + ++L + L Sbjct: 344 GQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTD-L 402 Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449 + T S+D + S + KI + P + GK K K+V + +L + +P Sbjct: 403 SYQTPDSLDPVLDSLKLKIQHTE-PFSRYGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + D + S + +++K+ IP+R++ L+EV +KK Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493 >gi|328953890|ref|YP_004371224.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca acetoxidans DSM 11109] gi|328454214|gb|AEB10043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca acetoxidans DSM 11109] Length = 629 Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 84/398 (21%), Positives = 162/398 (40%), Gaps = 26/398 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + +W + + V F++WG+ F + V V K+ + ++ Sbjct: 1 MLDFMRKHASSWFVTGIIGAIVVVFVLWGIGS--FRSAQFQEVAEVDGAKIYLPEYYKAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +++G N E A+++ L ++ L ++ + Q +GL + I Sbjct: 59 QNLVRNYQEQMGGESNEEVAKTLRLREQALGQMIDELLIKQASNRLGLNVTDAELRDYIR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R+P F + F+ + LAR + EY + + L +V + S L Sbjct: 119 RNPAF-ADERGFNEKRYHQLLARRRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQ 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 +A R E V+Y+VL A + Q++E + + +R PE ++ YI F + Sbjct: 178 EAYRLQQETVRVEYVVLGPSQFLKEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFKFN 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + + +I+ ++++ Y + E Y P+ V QL +A A Q ++F LA Sbjct: 238 DFDGQIKADREKIETYYYDHLEDYSRPQTIRVSQLFLEPPSKAGTAEQ-----QRFRLLA 292 Query: 301 EE-QGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTP---------------VI 342 E+ ++ + S K+Y P+ + L K+G P + Sbjct: 293 EKLLQRARAGESFEQLQKKYSPEAEGRIQAGELGLVKRGQNIPEWEAVAFHLKKGGIGMA 352 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 GY + V++I T EV+ + R +A Sbjct: 353 KTPRGYYLIKVNDILERKTPPLAEVQAQVEKSWRAEEA 390 >gi|319941578|ref|ZP_08015904.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis 3_1_45B] gi|319804948|gb|EFW01790.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis 3_1_45B] Length = 633 Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 122/550 (22%), Positives = 234/550 (42%), Gaps = 46/550 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R+ R W+ I +V + F++ G+ +++V VG + +F + Sbjct: 1 MLQAFREHKR-WLMVIAMVFIIPSFVVTGIYSYNRMTQSDNSIVKVGEVSITPENFDLAK 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L + Q++G ++ + + +L L+ A ++Q + + + I Sbjct: 60 RQQLERLRQEMGESFHASLLDTPQAREDLLRMLMDEAAINQVVAKNHISVSEAQAVALIK 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + D KFS + + L +G ++++++ L++ VV L + Sbjct: 120 NADALK-VDGKFSAERYEQFLRSQGKSDQQFVMEIRNDLAKEAVVSGVSATYPVPKALTE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF--D 238 Q E RSV +VL ++ + ++ + ++ +PE+ + Y++F D Sbjct: 179 QFYEILTEERSVRTLVLPADDYLDKVAVTDEEIKAYYNAHLKDFLSPEHIKAQYVVFSPD 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLK 291 +K S D+L+ YE+NK+++ PE R ++ +K+A+E +K Sbjct: 239 AFSNQKA---SLDDLKTFYEQNKQRWTVPEERRASHILIEFGDDKEAARKKAEELANEVK 295 Query: 292 KG-KKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 KF +LA+ EQG LS G +K + D++F+ AKKGD Sbjct: 296 ADPSKFAELAKANSVDTGSAEQGGDLSFFGRGVMTK------AFEDAVFN-AKKGDIVGP 348 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 I FG+ + +V++I P+ F++VK +I + +A ++E +EF L Sbjct: 349 IETEFGWHVIYVTDIHPAAVEPFEDVKSEIEREYAQQQA---IREFSTHADEFTNLVYEQ 405 Query: 402 -DEISRREKIVSIDLPLVDFAGKD-VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 D + + + DF ++ V E++ I E + +FG + K +T A+ Sbjct: 406 SDTLEPAAAKFGLKVETADFVTRNGVTDPELSQI-ITEHVAESLFGTEALKEKRNTSAIE 464 Query: 460 DGSYMWV--QIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 V ++ E P +R L+EV +TD K K A E A Q L ++ Sbjct: 465 VSGNRLVSARVVEYFPEAERPLDEVKGLITDALKRQKAGAMAIE----AGQAKLASVQQA 520 Query: 515 KNFRDIGKNL 524 K+ G + Sbjct: 521 KSVDGFGDEM 530 >gi|221067844|ref|ZP_03543949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni KF-1] gi|220712867|gb|EED68235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni KF-1] Length = 632 Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 90/417 (21%), Positives = 173/417 (41%), Gaps = 47/417 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + I L +L +P F+ G++ F+ S S TV V + + N+ Sbjct: 1 MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADHG----- 113 + E + RA++ +D K+LD+ + ATL++ + D L A Sbjct: 58 HRAESDRL-----------RAQNPSMDAKLLDSPEARYATLEKLVRDRVLAAAATKMHLT 106 Query: 114 -------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R EI D + + + + +G+ + + + + L+ V+G Sbjct: 107 TPDAQLVRTLREIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLG 166 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + L QA ++ R + + P+ A L ++E + ++ Sbjct: 167 AVSSTSFTTAAQLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYESHTSQFKQ 226 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE + Y+ D+ EK I +S D+L+ Y++N + PE R ++ K+ A Sbjct: 227 PEAATVEYVQLDLATVEKSIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAA 286 Query: 287 -------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329 Q K K F Q+A ++ G + + LG F ++ + +++ Sbjct: 287 EREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGRDAMVK-PFEEAV 345 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 F + K+GD + V+ FG+ I ++ IK +F+E++ + ++ +A K E Sbjct: 346 FKM-KQGDISDVVESDFGFHIIELTGIKQPKVPTFEEMRPKLEADLKQQQAQRKFAE 401 >gi|264677817|ref|YP_003277723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] gi|262208329|gb|ACY32427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] Length = 632 Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 90/417 (21%), Positives = 174/417 (41%), Gaps = 47/417 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + I L +L +P F+ G++ F+ S S TV V + + N+ Sbjct: 1 MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADHG----- 113 + E + RA++ +D K+LD+ + ATL++ + D L A Sbjct: 58 HRAESDRL-----------RAQNPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLT 106 Query: 114 -------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R EI D + + + + +G+ + + + + L+ V+G Sbjct: 107 TPDAQLVRTLREIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLG 166 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + L QA ++ R + + P+ A L ++E + + ++ Sbjct: 167 SVSSTSFTTAAQLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQ 226 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE + Y+ D+ ++ I +S D+L+ Y++N + PE R ++ K+ A Sbjct: 227 PEAATVEYVQLDLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAA 286 Query: 287 -------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329 Q K K F Q+A ++ G + + LG F +E + +++ Sbjct: 287 EREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVK-PFEEAV 345 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 F + K+GD + V+ FG+ I ++ IK SF+E++ + ++ +A K E Sbjct: 346 FKM-KQGDISDVVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAE 401 >gi|78222137|ref|YP_383884.1| hypothetical protein Gmet_0917 [Geobacter metallireducens GS-15] gi|78193392|gb|ABB31159.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 549 Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 94/426 (22%), Positives = 186/426 (43%), Gaps = 34/426 (7%) Query: 1 MLEIIRKASRTWVAKI---FLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ V K+ +V+ F+ FL+WG D ++ SS V V R KV + Sbjct: 22 MLGIMRKYKQSIVIKVVFGLIVLSFIGTIFLVWGKGDG--GLTPSSYAVKVDRTKVSYEE 79 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + +Q G + E + + L K+ LD+L+ A L + +D+G++ V Sbjct: 80 FQRTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSEEEV 139 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA P F K+ F + + L + KE+ L +V ++ Sbjct: 140 QKAIAAIPAFQ-KNGAFDSAQYFAVLKANRLAPKEFEAGQKDEL----MVKKAQDQIKAK 194 Query: 176 NLLLDQAKRFYFENRS----VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + D A R ++ R+ + + + + S+ LT + K ++ ++ PE Sbjct: 195 VQVTDDAARQLYKKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQIS 254 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-----------FSPEIRTVEQLVFPNQ 280 +SY+L D + K+E++ ++Q+ Y+KN ++Y +++ Q + Q Sbjct: 255 VSYVLADPAKLAGKVEVTEADIQSWYQKNIDRYQGKGGILPLAEVKEQVKADAQRFYAGQ 314 Query: 281 KEADEAFQSLKKGKK---FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS---LAK 334 K + A S+ K K +A E G ++S+ L + +K P ++ + + L K Sbjct: 315 KAYELAAASVNKHKTAGDLAAVARELGVAVSETPLFT-AKAPAPALAGEKEVLTRAFLLK 373 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + + G I + KPS +++ + + + +A E K+ + + Sbjct: 374 QNELGGPVETPKGIYILKLKERKPSDVPPLAQIRAKVEERAKAVRAVELAKKKAEEAQAK 433 Query: 395 LALGTS 400 LA G + Sbjct: 434 LAKGDT 439 >gi|261868689|ref|YP_003256611.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414021|gb|ACX83392.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 615 Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 85/387 (21%), Positives = 163/387 (42%), Gaps = 26/387 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS W +K + V F+I ++ L+S SS V +++ +F N + Sbjct: 2 VMEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSSAA-KVNGEEISQQAFQNQY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + SQ + L +++L +L+ L Q+++D+ L R+ EI Sbjct: 61 ----NIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIV 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F + KF + ++ L GI+ + Y + + L + G+ + + Sbjct: 117 TTPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALHLEQLQSGL--GITAFTVPVQ 173 Query: 181 QAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + +F+ R V L+ A S + +++ +K ++ PE ++ Y+ Sbjct: 174 QEALTKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPESVKVQYLDLS 233 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 EK I ISN E+ Y+ NK ++ + + + + +++A + +Q L+ G F Sbjct: 234 GANMEKNINISNVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGADFAT 293 Query: 299 LAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 LA+ E+G LS +S G F K + + D G F+ + Y Sbjct: 294 LAKNHSIDPISAEKGGDLSWVSAGEFPKVFEDAANALDV-------GKFSQPVKLDNSYH 346 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMR 376 I V K S + + V+ I Q+R Sbjct: 347 IILVEERKDSAVLPLERVRPQIVAQIR 373 >gi|332529107|ref|ZP_08405071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] gi|332041330|gb|EGI77692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] Length = 647 Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 116/546 (21%), Positives = 222/546 (40%), Gaps = 60/546 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E +RK ++ +A LV+L VP F++ G+ V VG+ ++ + + Sbjct: 1 MFENLRKHNKILMA--VLVLLIVPSFVLVGIDGYTRMTQKDRVVAHVGKIEITQGEWDAA 58 Query: 60 WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q + +++S+ AR + +L+ ++ L Q D L R+ Sbjct: 59 HRSETDRLRQMMPNLDARLLDSDAAR-----RGVLERMIRERVLQQAALDAQLNVSDARL 113 Query: 116 WGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + E+ P K + + + LAR+G++ + L+ + G Sbjct: 114 FQELQTIPAISQLRNAQGKIDMEAYQALLARQGMSPAGFEAQLRADLAVNQIQSSVTGTA 173 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +N D A + E R V S A L +++ + ++APE RI Sbjct: 174 VQTNTSADLALDAWLERREVQVARFTPADYATRVQVSEADLQAYWQANQGLFQAPEQARI 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------ 286 YI+ D+ K+ ++ ++L+ YE+N ++ PE R ++ K+A A Sbjct: 234 EYIVLDIDALRKEARVNEEDLRNYYEQNVDRLSGPEERRASHILITAAKDAPAAERQKAR 293 Query: 287 ------FQSLKK------GKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIF 330 L+K K F +LA + + S LG F ++ + + ++ F Sbjct: 294 EQAQALLAELRKAPANAQAKLFAELARKHSQDPGSASRGGDLGYFGRKAM-TLPFEEAAF 352 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L K+G+ + V+ FGY + V+ IK ++ E++ + ++R S++ + Y Sbjct: 353 AL-KQGELSDVVETDFGYHVITVTGIKKPKAKTYAELRPSLEAEIR----SQQAQTRYAE 407 Query: 391 LEEFLALGT-----SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 E G S+ ++ + ++ SI V V + + +LL VF Sbjct: 408 AAEAFTNGVYEQPDSLKPVADQLRL-SIQTATVSREPAQVTA-DAQGVLTNARLLSAVFS 465 Query: 446 KDDPLSKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 D +K +T V + ++ + +PAR L EV V++ VS++A Sbjct: 466 DDAIQAKRNTEAVEISPSRLAAARVVQHLPARTLPLAEVQAAVRE--------RVVSARA 517 Query: 504 NQLVLE 509 QL E Sbjct: 518 AQLARE 523 >gi|326387876|ref|ZP_08209482.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM 19370] gi|326207922|gb|EGD58733.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM 19370] Length = 645 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 97/413 (23%), Positives = 179/413 (43%), Gaps = 18/413 (4%) Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146 +++L L+ A + ++ + G+ + EIA+ P F G D KFS V+ +A+ G+ Sbjct: 92 EEVLSGLIDRAAVQEWGQKNGIGVSDRLIDSEIAKLPAFQGPDGKFSQQVYNQLIAQRGL 151 Query: 147 NEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 +K+ + K ++ + + G G P N + + E RS ++L ++ A Sbjct: 152 TDKQVREDIAKGLMGKLIMAGASEGAAMP-NGVAQRYAELLKEKRSGGILMLPSQ---AF 207 Query: 206 ADPSNAVLTQWFEKYKDN---YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 A + A Q + YK N Y+ PE + I Y+L D + S+ ++Q Y+ N Sbjct: 208 APKAPATDQQVADFYKANIVRYQRPERRTIRYVLVDEAAIKNLGAPSDADIQKRYQANAA 267 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 Y E R++ Q++ P+Q A L GK A +G + + I+ + + D Sbjct: 268 LYAPNETRSITQVILPSQSAAQAFAADLAGGKTIEAAAAAKGLAPAKIA-DRTHDQLVSD 326 Query: 323 VS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S +AD++FS A++G G+ G+ +A V IK + + + + +I + + Sbjct: 327 TSKAVADAVFS-AQQGKLITPTKGALGWSVARVDAIKKNPGKTLDQARAEIVLALTAERH 385 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + R+ E GTS+ +I + I + D D + G +++ P + Sbjct: 386 KAAMTDLAARIGEQAENGTSLTDIVKAYGLTIQTTDPVQADGSNPAKPGDKLS--PDVQG 443 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDW 490 L+ F + + LP+G V + PA L E+ V DW Sbjct: 444 LVQAAFAMEHE-GQPQVAGLPNGLRFAVFDVGAITPAAPAALAEIKAQVAADW 495 >gi|89901031|ref|YP_523502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] gi|89345768|gb|ABD69971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] Length = 640 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 89/411 (21%), Positives = 180/411 (43%), Gaps = 34/411 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + +RK ++ +A +FL L +P F+++G+ S S V VG + + Sbjct: 1 MFDFVRKHTKIMMAVMFL--LIIPSFVLFGIDGYNRSRDAGSVVARVGSHDITQGEWDAV 58 Query: 60 WKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 K E + + +++S +AR L++ + D +++ A D+F L R+ Sbjct: 59 HKSEADRLRASMPNLDAKLLDSPQARYATLERLVRDRVLAQAA-DKF----KLTTSDARL 113 Query: 116 WGEIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGG 171 + +P D K D + + +G+ + + + LS V G+ G Sbjct: 114 ARNLHENPSIAALRQPDGKLDMDRYRQLVGSQGLTPEGFEARVRQDLSVRQVEAGVGETG 173 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +++ D A +FE R V + P++A L +++ + +++PE+ Sbjct: 174 FAAASVA-DVALNAFFEKREVQIASFTAADFASKVSPTDAELNAFYKANQALFQSPEHAS 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y++ D+ +K I IS ++++ YE+N E+ E R ++ K+A A + Sbjct: 233 IEYVVLDMDSVKKSIVISEADMKSYYEQNAERLSGKEERRASHILITAAKDAPAADRQKA 292 Query: 292 KGK--KFIQLAEEQGKSLSDIS------LGSFSKEYIPDV--------SLADSIFSLAKK 335 K + + ++ + S +D++ GS + D D++F++ KK Sbjct: 293 KARADELLKTVRQSPDSFADVAKKNSQDTGSAANGGDLDFFTRGAMVKPFEDAVFAM-KK 351 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 GD + V+ FGY I +++IK SF+E++ I ++ +A + E Sbjct: 352 GDISEVVESDFGYHIIKLTDIKKPVQRSFEELRAGIEADLKTQQAQARFAE 402 >gi|260596813|ref|YP_003209384.1| periplasmic folding chaperone [Cronobacter turicensis z3032] gi|260215990|emb|CBA28646.1| Peptidyl-prolyl cis-trans isomerase D [Cronobacter turicensis z3032] Length = 645 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 126/544 (23%), Positives = 234/544 (43%), Gaps = 59/544 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+S+ L S+ V Q++ + N+ Sbjct: 21 MMDNLRAAANHVVLKIILGLIILSFILTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 79 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + +++G + S L ++ L L+ A +DQ+ + LE +V Sbjct: 80 NIERNNLERRMGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLEISDEQVRQ 139 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF + + + + G++ +Y L+ +V +G S+ Sbjct: 140 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMG----SDF 194 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRAPEYK 230 +L DQ + + R + V A+A+ S + +++++ +N+++PE Sbjct: 195 ILPGESDQFAALFAQQRQARTATI---VVDALAEKQQVSEQEIKDYYQQHANNFQSPEQF 251 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 R+SYI D + S DE+QA Y+K+++++ PE + + EA L Sbjct: 252 RVSYIKLDAAALAENA--SEDEIQAYYDKHQDEFGQPERNRYSLIQTKTEAEAKAILAQL 309 Query: 291 KKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K+G F LA+E KS+ I+ +G PD ++ L KG + VI Sbjct: 310 KQGADFATLAKE--KSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKDKGQLSDVIKS 364 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 S G++I + + P+ EV DI S KVK++ K L+ F AL + + Sbjct: 365 SVGFLIVRLDDTTPAKVKPLSEVHDDI---------SAKVKQE-KALDAFFALQRKVSDA 414 Query: 405 SRR--------EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHT 455 + EK + D+ +D E+ P + + + G + + Sbjct: 415 ANNDNESLVSAEKAAGVKAVDTDWFSRDAVPVELNFKPVTDAVFGGNLLGANGTPGSNSD 474 Query: 456 VALPDGSYMWV-QIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + DG +V +I + P ++ L +V +T + K K +K A E + K +L Sbjct: 475 IITVDGDRAFVLRITDHKPQAEKPLADVKEQVTALVKHQKALKAANEEAQK----LLSAL 530 Query: 512 KEGK 515 K GK Sbjct: 531 KAGK 534 >gi|148359402|ref|YP_001250609.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby] gi|148281175|gb|ABQ55263.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby] Length = 624 Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 112/519 (21%), Positives = 227/519 (43%), Gaps = 57/519 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S+ S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSLQISDAKVIVNDKPITMQAFETNY 60 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + Q+L ++ A L ++L+ +++ Q G E + Sbjct: 61 RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P F +D FS + L+ + + + + + F+G S Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166 Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D+ KRF Y + R DY+ + + A S + ++ ++ + E + Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280 Y+L +H+ + +I+IS DE+++ YE+NK Y +P V ++F P + Sbjct: 227 DYVLLTMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-----SLAKK 335 ++ADE + LKK + ++ S SD L +K +P ++ + + +L + Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRP 343 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + + +GY I + KP T S QEV+ I +Q+ A K + ++L + L Sbjct: 344 GEISTPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTD-L 402 Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449 + T S+D + S + K+ + P GK K K+V + +L + +P Sbjct: 403 SYQTPDSLDPVLDSLKLKMQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + D + S + +++K+ IP+R++ L+EV +KK Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493 >gi|251791833|ref|YP_003006553.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter aphrophilus NJ8700] gi|247533220|gb|ACS96466.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Aggregatibacter aphrophilus NJ8700] Length = 615 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 82/385 (21%), Positives = 167/385 (43%), Gaps = 22/385 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS W +K + V F+I ++ L++ + +S V +++ +F N + Sbjct: 2 VMEKLNGASNNWASKFLFGFISVTFVISSMAGYLYTRTDNS-AAKVNGEEISQHAFQNQY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + S+ + A+ L ++IL +L+ L Q+ ++ L R+ EI Sbjct: 61 ----NIASRNLSPQEADSPAQVANLKRQILSSLIDQELLRQYTNELKLGVSDERIKQEIV 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP F + KF + ++ L GI+ + Y + + L + G D Sbjct: 117 TSPNFQN-NGKFDNALYQQVLQTNGISAETYASYVREALRLEQLQGGLAITAFSVPAQRD 175 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + +F+ R++ L+ A ++A + +++ +K ++ PE ++ Y+ Sbjct: 176 ALAKLFFQRRNIRLANLSLADEIAKQTVTDAEIQAYYDAHKADFTIPESVKVQYLDLSGA 235 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK I I++ E+ Y+ NK ++ + + + + +++A + + L+ G F LA Sbjct: 236 NMEKNINITDVEIAQYYQDNKAQFTTQGQQRLAHIQVKTEQQAQDLYNQLQNGAAFADLA 295 Query: 301 E---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 + E+G LS +S G F K + D+ +LA G ++ + Y I Sbjct: 296 KNHSIDPTSAEKGGDLSWVSAGEFPKVF------EDAANALA-VGQYSQPVKLDNNYHII 348 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMR 376 V K + + + VK IA Q+R Sbjct: 349 LVKERKDAGVLPLENVKAQIAAQIR 373 >gi|186475780|ref|YP_001857250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] gi|184192239|gb|ACC70204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] Length = 642 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 89/410 (21%), Positives = 166/410 (40%), Gaps = 27/410 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + + LV+L P L + G+ S+ V SV K+ F N+ Sbjct: 1 MLDFFRNHQRLMMFMLILVIL--PGLGFVGIQGFRGFFDESANVASVNGHKITRGEFDNA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 W+Q++ Q +G +++ + K +LD L+ L + + L + + Sbjct: 59 WRQQMDRARQMLGAQFDAKMFDTPERRKDMLDGLIQQRVLADETQRLHLTVSDDALRRAL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D + + LA +GI +Y + +S + Sbjct: 119 LADPVIGSLKNPDGSIDVNKYKELLAMQGITPDQYQEQVRYSMSMQQLPAAITQTSFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V + + + P++A + +++ ++D++ P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGLAFRAKEYESKVQPTDAQIQAYYDAHRDDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGK- 294 S+ EL+ Y+ N + +P E+R L+ K+A A + K K Sbjct: 239 LSPATLAAAANPSDAELKKYYDDNIAHFRTPGEVRASHILIV-APKDASSADKEKAKQKA 297 Query: 295 ------------KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGD 337 +F QLA++ + S LG FS I + D++F + KK + Sbjct: 298 REVLAQVKAHPDQFAQLAQQNSQDPGSASKGGDLGYFSPGMIAGGKAFDDAVFKM-KKDE 356 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + +I FGY I V++++PS T F+EVK IA ++ A++ +D Sbjct: 357 VSDLIQSDFGYHIVKVTDVRPSVTKPFEEVKDSIAKDLKAQLATKAFGDD 406 >gi|307544940|ref|YP_003897419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata DSM 2581] gi|307216964|emb|CBV42234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata DSM 2581] Length = 607 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 95/400 (23%), Positives = 176/400 (44%), Gaps = 54/400 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFI 57 ML+ IR S +W AKI + + V ++G +++L + G + +V V + +P Sbjct: 1 MLQSIRDRSASWGAKIIIGAVVVAMALFG-AESLVGLLGGNDGDSVAKVNGESIP----- 54 Query: 58 NSWKQELGMISQKI--GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +Q+L + Q+ V E+ R L ++LD+L+S L Q+ E+ GL ++ Sbjct: 55 ---RQQLELEVQRAIRSGQVPPEQERE--LRSQMLDSLISERLLTQYAEEGGLHLSESQI 109 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P F +D KFS ++F +RL+ G + D + R G+ S Sbjct: 110 DQLIVNLPEFQDQDGKFSRELFRNRLSSAGFTPLAFRDQLRADMKRR----QLQQGLAVS 165 Query: 176 NLLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 L+ +R + RS + L + + + S L ++E + D+Y+ PE + Sbjct: 166 EFSLESEERRLAALQRQTRSFRHHALTVDDLESRPEASEQELQAYYEAHADDYQRPEQVK 225 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEA--- 286 ++Y++ D + ++ ++S +L+ + N E + R V ++ F +Q+ EA Sbjct: 226 LAYVVLDREQMAEQADVSEQDLRDAW--NAEAAEAD--RRVSHIMVRFGDQRTRQEAEAR 281 Query: 287 ----FQSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 Q L G F LA E +G L IS G F + + ++ FSL Sbjct: 282 LEEVRQRLADGASFADLAAEYSDDTSTSDEGGDLGVISRGFFGEAF------DEAAFSLG 335 Query: 334 KKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIA 372 +G + ++ G + V+ + +PSF S + + +A Sbjct: 336 -EGQVSDIVETDNGLHLIKVTELDRPSFEESRDRLARQVA 374 >gi|327398937|ref|YP_004339806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM 10411] gi|327181566|gb|AEA33747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM 10411] Length = 631 Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 172/368 (46%), Gaps = 33/368 (8%) Query: 39 GSSTVVSVGRQKVPFS----SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 GS+T + VG K+ F ++ N + + M++Q G + + + + + +K +D LV Sbjct: 39 GSNTAIEVGNTKISFQDYQKTYNNIYNFYVQMLTQLKGGNFSDDDLKKLNIKQKAIDILV 98 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 A L Q + G++ + V I + F+ + KFS + +++ L IN K+Y D Sbjct: 99 ERALLLQQAKKEGIKVSNEDVLRAIESNKAFYY-NGKFSKEKYLALLKANNINPKDYEDS 157 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS---VDYIVLNNRHVPAIADPSNA 211 L + ++ S+ K F+ +N S +D++ + + + Sbjct: 158 LKTALYIDKLKKRLFKDVKVSD---KDVKSFFDKNYSKINLDFVSFDISSFKSKVKVDDE 214 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 L ++++K+K +YR P + YI+ + +KKI+++++E +A Y +K+ YF +R Sbjct: 215 KLNKFYQKHKSDYRIPTMVKFEYIVVPLSYVKKKIKVTDNETEAFYNAHKD-YFKVPLRI 273 Query: 272 -VEQLVFPNQ---------KEADEAFQSLKKGKKFIQLAEEQGKSLSDI-------SLGS 314 V ++ ++ K+AD+ ++ L+ K I E K SD LG Sbjct: 274 KVAHILISSKDNQTDSKLRKKADDVYKLLEDKK--ISFKEAAKKYSSDDYTRNVGGELGY 331 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 +K+ + D ++I L K+G+ + FGY IA V +IK F F+ VK I + Sbjct: 332 VTKDMVID-EFWNNIIKL-KRGEISKPFKTKFGYHIALVEDIKKPFVRPFKSVKDQIKDY 389 Query: 375 MRITKASE 382 ++ KA + Sbjct: 390 LKTNKAKK 397 >gi|187478461|ref|YP_786485.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N] gi|115423047|emb|CAJ49578.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N] Length = 648 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 87/407 (21%), Positives = 176/407 (43%), Gaps = 19/407 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R W+ I LV++ F I G+ V+ + ++G Q + F + Sbjct: 1 MFEFIRT-HRRWMQFILLVLVVPSFAIVGVQGYSSFVNTEVELANIGGQGITQPQFDAAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + L +++L+ L+ L D + IA Sbjct: 60 RNQLEQFRQRMGSQFDPAVIDTPALREQLLNQLIDQRLLLMVAADNRFSVSDETLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P D +FS + + LA +G++ + + + L+ V+ R +++ Sbjct: 120 AIPQVQ-DDGRFSPERYRQVLAAQGLSPTSFENGLRRDLAVARVLEPIGLSARVPQEVVN 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ + R++ + + S + W++ K++ R PE + Y++ D Sbjct: 179 NVEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEA-DEA--------FQS 289 + +++ ++++ + YE+NK ++ +PE R ++ P EA D+A ++ Sbjct: 239 AATQGVQVKDEDIASYYEQNKNRFGTPEQRRASHILIEAPASGEARDKARAKAEAIAREA 298 Query: 290 LKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F +LA ++ G + LG + +P S+ +I L K G + V+ Sbjct: 299 AANPASFAELAKKDSQDAGSAARGGDLGWIAANSVPP-SVQQAIDGLPKDG-VSGVVESP 356 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I V++IKP+ EVK+ I N++R AS + E +L+ Sbjct: 357 FGFHIIKVTDIKPAQIKPLAEVKEQITNEIRKQLASARFAEMATKLQ 403 >gi|299531702|ref|ZP_07045107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] gi|298720418|gb|EFI61370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] Length = 632 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/417 (21%), Positives = 174/417 (41%), Gaps = 47/417 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + I L +L +P F+ G++ F+ S S TV V + + N+ Sbjct: 1 MFESIRKHSKFVM--ILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADHG----- 113 + E + RA++ +D K+LD+ + ATL++ + D L A Sbjct: 58 HRAESDRL-----------RAQNPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLT 106 Query: 114 -------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R EI D + + + + +G+ + + + + L+ V+G Sbjct: 107 TPDAQLVRTLREIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLG 166 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + L QA ++ R + + P+ A L ++E + + ++ Sbjct: 167 SVSSTSFTTAAQLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQ 226 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE + Y+ D+ ++ I +S D+L+ Y++N + PE R ++ ++ A Sbjct: 227 PEAATVEYVQLDLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAARDLPAA 286 Query: 287 -------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329 Q K K F Q+A ++ G + + LG F +E + +++ Sbjct: 287 EREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVK-PFEEAV 345 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 F + K+GD + V+ FG+ I ++ IK SF+E++ + ++ +A K E Sbjct: 346 FKM-KQGDISDVVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAE 401 >gi|91793843|ref|YP_563494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella denitrificans OS217] gi|91715845|gb|ABE55771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella denitrificans OS217] Length = 625 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/409 (22%), Positives = 176/409 (43%), Gaps = 42/409 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ S+ VAK LV++ F G+S L G+ST V V +V S Sbjct: 1 MLEKIREGSQGVVAKGILVLVIFSFAFAGVSSYL----GTSTDLPVAIVNGDEVSTSELE 56 Query: 58 NSWKQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E I Q++G + + A G+ + +L+ LV +DQ +GL + Sbjct: 57 QAFQNERSRIEQQLGDMFETLAADDTYMAGIKQSVLEKLVGDKLIDQAAFALGLRVSDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F D F + + + L + G + + ++R ++ VG Sbjct: 117 IKQAIVSEPAFQ-TDGVFDNSRYQAVLRQLGYQAVSFKNMMRVDMTRRQLLSALVG---- 171 Query: 175 SNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S LD Q + R + Y+ + + A ++ +++ + Y +PE Sbjct: 172 SEFALDGEAKQLAEVQGQTRDIRYLTVESNQFLADNSVTDEEAQAYYDANQSQYLSPEKV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-------- 282 + Y+ +V E K I S +E++A Y++++++Y + E R ++ + Sbjct: 232 SLEYLELNVAELAKDITTSPEEVKAYYDEHQKQYQTAEKRLAAHILINKSDDDAADEAKA 291 Query: 283 --------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 A E+F++L K + + EQG L G + + +++FSL + Sbjct: 292 AAILAKLTAGESFEALAKTDSEDKFSGEQGGKLDWFEPGVMAPAF------DEALFSL-E 344 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 KG + ++ FGY I + +++ F +V+ I Q++ KA +K Sbjct: 345 KGAHSGLVSTEFGYHIIKLLDVQAGQLAPFADVEAKIVAQIQEKKALDK 393 >gi|298529972|ref|ZP_07017374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira thiodismutans ASO3-1] gi|298509346|gb|EFI33250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira thiodismutans ASO3-1] Length = 628 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 123/658 (18%), Positives = 278/658 (42%), Gaps = 78/658 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+I+R+ +++W+ K+ V+ + F+ WG+ F+ T+ + + + F ++ Sbjct: 1 MLDIMRRNAQSWIVKVLFGVIVIVFVFWGVGS--FTEDDRETLAVINGEPISIQEFARAY 58 Query: 61 KQEL-GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + M Q G ++ E RS+ L +++ + +V+ L Q +GL ++ EI Sbjct: 59 ESTAHSMREQNPG--LSREDMRSMQLREQVFNQMVNSKLLVQKASQLGLSVSREQLQQEI 116 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSN 176 P F ++N+F + L + ++ H M + V + P+ Sbjct: 117 TSLPAFFDEENRFDPQRYEQVLRSHRLTPSQFERDFRHNLLMEKMEEYVSL------PAK 170 Query: 177 LLLDQAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 + + F+ RS +DY + + + ++++ +D + PE RI+ Sbjct: 171 PNEHEVQEFFNYVRSQAKIDYKLFEADEFHDKVSITEEQIKEYYQDNQDRFMEPEKIRIA 230 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ----- 288 ++ +S++E++A ++ ++ ++ PE ++ +++A E Q Sbjct: 231 HLELSPDALAGAQRVSSEEVEAYFQSHQSEFEQPEEVKARHILVEVEEDAPELEQEQARE 290 Query: 289 -------SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDF 338 L+ G+ F +LA E + S LG F + + + ++ F L G+ Sbjct: 291 RIEQILAELEMGQSFEELAREHSQCPSAAEGGDLGRFGRGEMVE-PFEEAAFDLT-PGEV 348 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + FG+ + V + + +EV+ +I ++ KA++++ + + E + G Sbjct: 349 SSPVQTRFGWHLIKVEEYVEAASPDLEEVEDEIRRKIGREKAADQIGDYADDVLEIVVAG 408 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+ E + + ++L D+ ++ +G E +P + L R+F + + + L Sbjct: 409 GSLKEAA---DSLGLELKETDYFSRE-QGPEELELPG--EALDRLFNLMEGEVTESPIML 462 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGK 515 D Y++ + AR +LE+V ++ ++ K+++ AE+ + +L+ + E + Sbjct: 463 -DNGYLYAEKTGVREARSLELEKVEDEIVEELTRQKSMEMAEKAAGDKLDKILDEAVEPE 521 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG------- 568 L+T+ +R G+ I + P + F + G Sbjct: 522 EL---------DLVTSEPFDRQ-------GF--IPGLGMNPQLAEQAFVQDTGSWLPEVK 563 Query: 569 ---LSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Y+V +V N + P QEKD+++ QM + + +S I L+S+ + + Sbjct: 564 STDAGYIVARV-NEHIEPDMEQFEQEKDQWMQSYAQMQRQQVFNSYITMLRSRADINM 620 >gi|53805225|ref|YP_113052.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str. Bath] gi|53758986|gb|AAU93277.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str. Bath] Length = 605 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/407 (22%), Positives = 184/407 (45%), Gaps = 56/407 (13%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV-V 75 L+++ +PF WG+++ F + V VG + + +++Q+L + +G V Sbjct: 1 MLILVGIPFAFWGINN-YFDSGKEAPVAVVGDRDFFERDVVQAYQQDLANL---VGLGDV 56 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + + + L++ + D L+S A + GL V I P F D KF D Sbjct: 57 DEKHLKRQALERLVRDELISQAAAGE-----GLAVPDSAVRAFIQTLPYFQ-TDGKFDKD 110 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF----ENRS 191 + L+ +G + +++ + L ++ F G+ + + Q +F + R Sbjct: 111 KYNVMLSAQGTSSPVFVEQVKRAL----LMEQFQRGITDTAFVTRQQVEAFFRLKNQERE 166 Query: 192 VDYIVLNNRHVP-AIADP--SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 ++++ VP A AD S + + +++ + D +++PE ++Y+L + + K+++ Sbjct: 167 IEFVT-----VPLAKADEEVSESSIDEYYRSHPDEFQSPETVSVNYLLLSLDDVAKEVKP 221 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---VFPNQKEADEAF---------QSLKKGKKF 296 + +EL+ YE+ K + + E R V + V P + E DEA + L KG+ F Sbjct: 222 TEEELRNFYEEQKAGFTTEERRKVSHILVTVDPAKPE-DEAAALAKIRQIRERLLKGEDF 280 Query: 297 IQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 +LA+ E+G L ++ G P+ A S +G+ + + SFG Sbjct: 281 AKLAKETSDDRVSAEKGGDLGVVTKGGME----PNFEKAALALS---QGEVSEPVRTSFG 333 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 Y + V+ + P+ T +++VK ++A R A + + ++L EF Sbjct: 334 YHLIKVTELTPATTKPYEQVKDEVAAGFRRNAAENRFYDLGQKLTEF 380 >gi|114799881|ref|YP_760495.1| peptidylprolyl cis-trans isomerase-like protein [Hyphomonas neptunium ATCC 15444] gi|114740055|gb|ABI78180.1| peptidylprolyl cis-trans isomerase, homolog [Hyphomonas neptunium ATCC 15444] Length = 637 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 127/642 (19%), Positives = 275/642 (42%), Gaps = 65/642 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SG-SSTVVSVGRQKVPFSSFI 57 ML +++K +R+ V K+ L+++ V WG+ DA+ + SG + VVS G + + + Sbjct: 1 MLALMKKMTRSPVGKLVLMIVIVGMAFWGV-DAIVNQMRSGLGANVVSAGSRGLDPADL- 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV----SGATLDQFIEDIGLEADHG 113 ++ E + + I ++S L++ ++D +V + T + E IG+ Sbjct: 59 -DFRVE--TVLRNINATAERPLSKSEALEQGLIDQIVEVEKARITRLGYGESIGISPSPE 115 Query: 114 RVWGEIARSPLFHGK-DNKFSHDVFVSRLAREGINEKEY-----IDHYTKMLS---RTDV 164 V E+ P F + +F R+++ G++ ++ D + LS R+ V Sbjct: 116 AVVEEMNSIPAFQNPLTGELDPAMFRDRISQLGMSPAQFERQLQDDILIRALSQAGRSAV 175 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 G ++ + + E R V + + PA P++A + +++++ + Sbjct: 176 YG--------PQVIANIQANYLGETREVAWFFFDASDAPAPEVPTDAEIKAYYDEHLERL 227 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEA 283 + PE + + + + K+E+++ E+ YE K E++ +P+ RT +L+FP + A Sbjct: 228 KQPERRALDILRMSTDDFTGKVEVTDQEVATVYEATKSERFAAPDQRTYAELLFPTRDAA 287 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD--FTPV 341 AF L G + + + + + E I D +L D++F ++ + P Sbjct: 288 RTAFGLLAGGADPNSV-----TGANSVQMRTARAEDISDQALQDAMFGPGRQSGAMYGPR 342 Query: 342 -IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + G +++A + +++P +EV ++I + +A + L+E LA G Sbjct: 343 EVDGQ--WLVARLISVQPGAVKPLEEVAEEIRLGLARERAQLLFSAALETLDEALAAGND 400 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKE---VAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 + +++ + I + VD G +G + ++ +P FR+ ++ + VA Sbjct: 401 LSQVAEDIGVPIISIAPVDQNGITEQGNQFTILSEVPEALPQAFRL--PENEIGSRFDVA 458 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 S + V + +PA +L+ + V + +TA + L E + G Sbjct: 459 ---SSVVLVAPRRIVPAATPELDAIKDRVSAMIVSERTANAAEAAVEALT-ERVRAGSVT 514 Query: 518 RDIGKNLGASLLTTNQINRMD-----NENKFFGYDG--ISQVFSGPVEMVKCFPIENGLS 570 D A+ + Q++R+ + + G G + F+ P V P +G Sbjct: 515 LD-----AAAAESGAQVDRLPEPVSRSNAQAMGVPGPLMQATFNNPAGSVISLPTGDGSV 569 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 + + K+ + V P + I+ + + D+ +S+ A L++ Sbjct: 570 FAILKILS--VSP--PTPEMIASMGTAASADVTESLTADLEA 607 >gi|300715595|ref|YP_003740398.1| peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661] gi|299061431|emb|CAX58543.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661] Length = 623 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 93/410 (22%), Positives = 184/410 (44%), Gaps = 38/410 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV------VSVGRQKVPFS 54 M++ +R AS V KI L ++ + F++ G+ + L +G +S + + FS Sbjct: 1 MMDNLRAASNHVVLKIILALIILSFVLTGVGNYLIGGNGDYAAKVNGQEISRAQLENAFS 60 Query: 55 SFINSWKQELG-MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + + +Q+LG SQ G ++ R L + + ++L++G + +D+GL Sbjct: 61 NERSRQQQQLGEQFSQLAGNPAYIQQIRQQALSQLVDESLLTG-----YAKDLGLAISDD 115 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 ++ I F + KF + ++ + + G +Y + K L+ ++ Sbjct: 116 QIKQAIFNQSAFQ-TNGKFDNTKYLGLINQMGFTADQYAEALRKQLTTQQLIAAVTN--- 171 Query: 174 PSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 ++ +L D + R V +N + A S + ++E+ K+N+ +PE Sbjct: 172 -TDFMLTGETDALAALVSQERLVREATINVAALAAKQTVSAEEIKNYYEQNKNNFMSPEQ 230 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 R+SYI D ++ S ++Q+ Y++++ Y P+ + + EA A + Sbjct: 231 FRVSYIKLDAASMQETA--SEADIQSWYDQHQADYTQPQRSRYSIIQTKTEAEAQSALDA 288 Query: 290 LKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +KKG F LA+E KS IS +G + PD L + L +KG + VI Sbjct: 289 MKKGGDFAALAKE--KSADPISARNGGDMGWLEPDTTPD-ELKSA--GLKEKGQLSGVIK 343 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 S G+++A +++++P V DIA +++ EK + Y +L++ Sbjct: 344 SSVGFIVARLTDVQPQQIKPLAAVHDDIAAKVK----QEKAIDAYYKLQQ 389 >gi|293391759|ref|ZP_06636093.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952293|gb|EFE02412.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 615 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/386 (22%), Positives = 167/386 (43%), Gaps = 24/386 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS W +K + V F+I ++ L+S SS V +++ +F N + Sbjct: 2 VMEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSSAA-KVNGEEISQQAFQNQY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + SQ + L +++L +L+ L Q+++D+ L R+ EI Sbjct: 61 ----NIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIV 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F + KF + ++ L GI+ + Y + + L R + + +G + + Sbjct: 117 TTPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREAL-RLEQLQSGLGITAFTVPVQQ 174 Query: 181 QA-KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 +A + +F+ R V L+ A S + +++ +K ++ PE ++ Y+ Sbjct: 175 EALAKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPELVKVQYLDLSG 234 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 EK I IS+ E+ Y+ NK ++ + + + + +++A + +Q L+ G +F L Sbjct: 235 ANMEKNINISDVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGAEFSTL 294 Query: 300 AE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 A+ E+G LS +S G F K + + D G F+ + Y I Sbjct: 295 AKNHSIDPISAEKGGDLSWVSAGEFPKVFEDAANALDV-------GKFSQPVKLDNSYHI 347 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMR 376 V K S + + V+ I Q+R Sbjct: 348 ILVEGRKDSAVLPLERVRPQIVAQIR 373 >gi|296107448|ref|YP_003619148.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila 2300/99 Alcoy] gi|295649349|gb|ADG25196.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila 2300/99 Alcoy] Length = 624 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 112/519 (21%), Positives = 226/519 (43%), Gaps = 57/519 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + Q+L ++ A L ++L+ +++ Q G E + Sbjct: 61 RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P F +D FS + L+ + + + + + F+G S Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166 Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D+ KRF Y + R DY+ + + A S + ++ ++ + E + Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280 Y+L +H+ + +I+IS DE+++ YE+NK Y +P V ++F P + Sbjct: 227 DYVLLTMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-----SLAKK 335 ++ADE + LKK + ++ S SD L +K +P ++ + + +L + Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRP 343 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + + +GY I + KP T S QEV+ I +Q+ A K + ++L + L Sbjct: 344 GEISTPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTD-L 402 Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449 + T S+D + S + K+ + P GK K K+V + +L + +P Sbjct: 403 SYQTPDSLDPVLDSLKLKMQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + D + S + +++K+ IP+R++ L+EV +KK Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493 >gi|103486661|ref|YP_616222.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256] gi|98976738|gb|ABF52889.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256] Length = 673 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 91/427 (21%), Positives = 174/427 (40%), Gaps = 15/427 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--------VVSVGRQKVP 52 M+ IR + + K FL + FV ++ G++ AL V+G+ST V VG +++ Sbjct: 26 MITAIRAMFSSTIGK-FLALAFV--VLVGVAFALSDVTGNSTFGGIGGANVAKVGGEEIG 82 Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 + +Q + + + + GLD+ +L L+ G DQ+ ++G Sbjct: 83 VGELRDRVRQAYDQARRNQPGLTMAAFVENGGLDQ-VLGQLIDGLAFDQYATELGFGVSK 141 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + G IA P F G KF VF + L + GI+E + + + + Sbjct: 142 RLIDGRIADLPAFAGVSGKFDQTVFENFLRQNGISEAQLRRDLRQQILLEQLAAPIAQMP 201 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 R + L + E R + DP +A L ++ + + PE + I Sbjct: 202 RIAPALAEPYAALLLEQRRGQATFIPASAFAPKGDPGDAALRRFLTQNAAKFTVPERRVI 261 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y +FD +++ E+ Y+ N +Y + E R Q++ P+Q A+ ++ Sbjct: 262 QYAMFD-RASVPVPAVTDAEIARVYKDNAAQYAATETRRFAQVILPDQAAANRLAAKVRS 320 Query: 293 GKKFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 G A E G S S LG + + AK+G+ + G+ + Sbjct: 321 GASLASAAAEAGLSASTTGDLGQSAYAAT-TSAAVARAAFAAKRGEVVGPLQTGLGWTVV 379 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V ++ S + +I ++ KA+E + + Y +++ + G S++EI+ K+ Sbjct: 380 RVEDVTTRPARSLADASAEIRAELASNKANEAIVDYYNAIQDAVNSGASIEEIATDRKLQ 439 Query: 412 SIDLPLV 418 ++ P + Sbjct: 440 IVETPAI 446 >gi|323526043|ref|YP_004228196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] gi|323383045|gb|ADX55136.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] Length = 646 Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 86/409 (21%), Positives = 167/409 (40%), Gaps = 25/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + L+++ VP L + G+ S+ V SV K+ + + N+ Sbjct: 1 MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 59 MRQQLDRARQMLGAQFDIKAFDTPERRSEMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D D + LA +G+ +Y + ++ + G S Sbjct: 119 LNDPVISSLKKPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------D 284 ++ S+ +L+ Y+ N Y + ++ K+A + Sbjct: 239 MSPATLAASVQPSDADLKKYYDDNIAHYRTEGQVRASHILIAAPKDASPADKAKAKQKAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQ----GKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F Q+A++ G + LG F + I + D++F+L KK + Sbjct: 299 ELLAQVKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ FGY I V+++KP+ T F EVK IA ++ AS+ +D Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAVTRPFDEVKDQIARDLKTQLASKAFSDD 406 >gi|52842082|ref|YP_095881.1| hypothetical protein lpg1855 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629193|gb|AAU27934.1| peptidyl prolyl cis-trans isomerase D [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 624 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 115/519 (22%), Positives = 225/519 (43%), Gaps = 57/519 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDRPITMQAFETNY 60 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + Q+L ++ A L ++L+ +++ Q G E + Sbjct: 61 RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P F +D FS + L+ + + + + + F+G S Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166 Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D+ KRF Y + R DY+ + + A S + ++ ++ + E + Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTLEQVTL 226 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280 Y+L +H+ + +I+IS DE+++ YE+NK Y +P V ++F P + Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA----DSIFS-LAKK 335 ++ADE + LKK + ++ S SD L +K +P ++ D + S L + Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRP 343 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + + +GY I + KP T S QEV+ I +Q+ A K + ++L + L Sbjct: 344 GQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKYAQVLEQLTD-L 402 Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449 + T S+D + S + KI + P GK K K+V + +L + +P Sbjct: 403 SYQTPDSLDPVLDSLKLKIQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + D + S + +++K+ IP+R++ L+EV +KK Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493 >gi|237807859|ref|YP_002892299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis DSM 9187] gi|237500120|gb|ACQ92713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis DSM 9187] Length = 638 Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 112/550 (20%), Positives = 236/550 (42%), Gaps = 39/550 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 +++ +R ++ VAKI ++ + F + G+ + S + + V V + + + S+ Sbjct: 2 LMDKLRDGAQGRVAKIIFWLIILSFALAGVGSYINSPASNDPAV-VDDEVISAQTLEQSY 60 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + + G + N + L K +L+ LV+ + L+ + G+ +V Sbjct: 61 QNERARMQAQYGEAAAQLLDNPQYL--AQLKKSVLERLVNQSLLNNKALNAGVRLSDEQV 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF-VGGMRP 174 I + P F DNKF + F + L+R G + + + R D++ + + G+ Sbjct: 119 KDVIRQMPEFQT-DNKFDNQKFTTALSRVGYTPESFANSM-----RQDLIRQYWLDGILT 172 Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 + L + Y + R V I + ++ + +++ + + + E Sbjct: 173 TEFALPAEVSRLDALYQQKRDVKMITIPVETFSKQITVTDQDVDAFYKAHSNEFMQSEQV 232 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------QKEAD 284 +++YI+ + + K I+ ++ EL+A Y+++ E + P R V ++ + QK+AD Sbjct: 233 KLNYIVLNSADLAKTIQPADSELKAYYQQHAELFTEPARRKVSHILITDKDDNAAQKKAD 292 Query: 285 EAFQSLKKGKKFIQLAE-EQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPV 341 E LK G F QLA+ E +LS G ++ + D + + F+L +K + + V Sbjct: 293 ELLAKLKSGTDFTQLAKTESADTLSARQGGELDWFEKGVMDPAFETAAFALNQKNELSAV 352 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTS 400 + +FGY I + + + + + +V + + KA E + ++L + S Sbjct: 353 VKSAFGYHIIKLLDKQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKLSDIGFENPDS 412 Query: 401 MDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 +D ++ + LPL DF E+ KEQ ++ + +++ Sbjct: 413 LDAVAE-----GLKLPLQKTDFIAAQQLPAEINVPAVKEQAFAEKLRDEN--TNSEVISV 465 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 D + + + + P+ + L EV V + K AE+ ++A L LE K G++ Sbjct: 466 SDTVAVMLHVIDYKPSSAKPLSEVKDLVVAKLRATKAAEKAHTEAMAL-LEKVKAGQSID 524 Query: 519 DIGKNLGASL 528 + L A + Sbjct: 525 EQLTKLNAKV 534 >gi|302878839|ref|YP_003847403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] gi|302581628|gb|ADL55639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] Length = 631 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 86/390 (22%), Positives = 169/390 (43%), Gaps = 23/390 (5%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 +I L+++ +PF +G+ D+ + +V +K+ F + +Q+ + Q +G Sbjct: 13 QIVLLLIILPFAFFGV-DSYRHSGDTDAPATVNGEKITKQEFDTAMRQQQDKMRQVLGEN 71 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN-KFS 133 + + + ILDNLV+ L + + GL ++ I F KD KF Sbjct: 72 FDPALFEKAEMKRAILDNLVAQRLLLERAKAAGLTVTDEQIAQVIGGIDAF--KDGGKFD 129 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + S LA + + + L+ + + SN + D + R V Sbjct: 130 KARYTSALAAQNMTPAIFEARVKDELTGQQMRDAYTQNGYVSNAVADNIIAINEQQRIVS 189 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + +R A A +A + +F+ + ++ PE ++ Y+ F + + K +I +E+ Sbjct: 190 IAPILSRSFMAQAKVDDAAIKTYFDANQKEFQVPEQVKVEYVKFSIADLIAKADIKAEEV 249 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KFIQLA 300 + Y++++ ++ S E R ++ A +A Q K K KF LA Sbjct: 250 RQYYDEHQSEFASAEQRQASHILLVVAATAPQAEQDAVKAKAEKLLAQVKQEPGKFADLA 309 Query: 301 ----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ G +++ LG F + + +++FSL K G+ + ++ FGY I ++ I Sbjct: 310 RQNSQDPGSAVNGGDLGMFGRGMMVK-PFDEAVFSL-KAGEISGLVKSDFGYHIIKLTAI 367 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKE 386 K S F EV+ +IA ++R KA++ E Sbjct: 368 KASRATPFNEVQAEIAGKLRQQKAADSFAE 397 >gi|78485440|ref|YP_391365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira crunogena XCL-2] gi|78363726|gb|ABB41691.1| peptidyl-prolyl cis-trans isomerase D [Thiomicrospira crunogena XCL-2] Length = 638 Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 78/405 (19%), Positives = 180/405 (44%), Gaps = 20/405 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ W+A + + ++ + F ++G+ D V V + V + F+ + Sbjct: 1 MLQSIRNHAQGWIAWVIVGLIILTFALFGI-DQYAKGDKIIVVAEVNGEDVTANEFLTLY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + G + + + + L +++D L+ + Q+ + + + ++ I Sbjct: 60 SRQQARLKNQFGEMYD-QVVKDQQLRDEVMDALIESEVVRQWADSHNMMISNQQLSATIE 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + +F KD +F ++ L + G+N + + L + + ++ L Sbjct: 119 SAEVFQ-KDGQFDQQLYQDILLQNGLNVARFEYEQRQFLIENQNRQLTMASAITNDTQLA 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q F+ R V+Y+ ++ R A ++ + ++ K+K+++ PE +SY+L Sbjct: 178 QLAALQFQQRKVNYLRVDQRPFMQEAQITDDEIQTYYNKHKEDFITPEQVVLSYVLLSKK 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLK 291 + K+ + + L+ Y+ NK+++ PE R ++ QK E L Sbjct: 238 DLADKVSVDDAILKRFYQDNKDQFTQPEKRQASHILVKVDAESQDAEAQKTIKEIQAKLA 297 Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G+ F LA ++ G + LG F + +P + ++FS+ K + + + F Sbjct: 298 DGEDFAALAKTYSDDPGSANMGGDLGLFQQGMMVP--AFDKAVFSM-KLNEISDPVKTEF 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 GY + ++ I+P +F EVK ++ R +A ++ ++ ++L Sbjct: 355 GYHLIKLTKIQPKKMQAFNEVKAEVETLYRRQQADKQYFDELEQL 399 >gi|320354707|ref|YP_004196046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus propionicus DSM 2032] gi|320123209|gb|ADW18755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus propionicus DSM 2032] Length = 626 Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 86/396 (21%), Positives = 178/396 (44%), Gaps = 31/396 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IIRK +++ V + +V++ + F+ WG+ L + V V +++ + F ++ Sbjct: 1 MLNIIRKNAQSIVVQSIVVIIAIVFIFWGVGTNL--NDNPNAVAVVNGKEISYRDFQQNY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + Q+ G + + S+G+ ++L+ L+ L Q E +G+ +I Sbjct: 59 ERAIEGYKQQFGGQLPEKFVESLGVKDQVLNQLIQSELLRQGAEKMGMTISKEATQRKIQ 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSNL 177 +F ++ +F D + + LA+ ++ + I + M + +G F S Sbjct: 119 DLEVFRDENGRFDLDRYKTVLAQNRLSPTSFEAGIGNDLLMNRAVESLGAFA---TVSAA 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 LD F + + Y + + +A L W+E+ K Y+ P +++Y+ F Sbjct: 176 ELDNWVEFLDQEVKLAYTTVRSSAYEPQVKVDDASLQSWYEQTKQQYKTPPQSKLAYLSF 235 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------- 284 + K + ++++ +Q Y+++ E Y +PE R ++F K AD Sbjct: 236 PFADDLKAVAVNDEAVQRYYQEHAELYATPEQRRARHILF---KIADGDTAETKAAKKAA 292 Query: 285 --EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + ++ G F LA++ + S LG FS+ + + S+FSL + G+ + Sbjct: 293 AEKVLAQIRGGGDFALLAKQFSEDTSKEKGGDLGFFSRGQMVE-PFERSVFSL-RTGEIS 350 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 V+ +GY + + IKP+ T S +EV+ I ++ Sbjct: 351 GVVETPYGYHLVKLEEIKPATTRSLEEVRASIRAEL 386 >gi|261855012|ref|YP_003262295.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] gi|261835481|gb|ACX95248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] Length = 645 Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/301 (21%), Positives = 135/301 (44%), Gaps = 11/301 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R+ + W+A + ++ +PF++WG+ + FS + V V + +F + Sbjct: 1 MLMDLRERIQGWIAYAIIGLISIPFVLWGVGE-YFSGGKNQPVAEVDGLPISQQAFEQAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q+ I QK+G V++E +S+ LD+++LD +++ L F++ G A V I Sbjct: 60 SQQRQAIIQKLGGSVSAEMLQSLNLDQQVLDQMINERVLRVFVQKAGFRAPDAVVADLIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178 P F D F + + +A G + ++ L + V+ + S ++ Sbjct: 120 SEPAFK-TDGAFDVKKYEAFVAARGTT----VANFEAGLKQDIVMQTLENAISESTIVTA 174 Query: 179 --LDQAKRFYFENRSVDYIVLNN-RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 LDQ + + R + + L+ R + +A P++ + ++ +K + PE ++ YI Sbjct: 175 PELDQIVKLRDQTREIGMVRLDRARVIDTVAAPTDGAIEAYYAAHKGEFIRPERVKLRYI 234 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 +++++ +++ Y +K + +RTV ++ K AD A K K Sbjct: 235 ELSPKTLAPSVKVTDAQVEQAYANYVKKQEAQVVRTVRHILISVPKNADGAAIEAAKNKA 294 Query: 296 F 296 Sbjct: 295 L 295 >gi|294650670|ref|ZP_06728024.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus ATCC 19194] gi|292823461|gb|EFF82310.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus ATCC 19194] Length = 623 Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 134/653 (20%), Positives = 256/653 (39%), Gaps = 69/653 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVP---FSSFI 57 +E R + W+ K+ LV+ P + G+ + FS + V SV Q + S I Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGI-EGYFSGGNKADVAKSVNGQDISNKELESAI 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++K + + Q ++N + ++ +D LV+ + L Q E +G+ ++ Sbjct: 60 KNYKDQYLALVQGDESLLNLS-----AIQERAMDALVARSLLSQQAEKLGISLSDAQLEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P F ++ +FS ++ + L G+ + I DH KM+S + + V Sbjct: 115 MLAQQPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLMDNALV--- 170 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S L Q E R++ + S +T ++ K+K+ ++ + Sbjct: 171 --SKSDLQQLANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDV 228 Query: 233 SYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 Y++ E+ + +++ +LQ Y EK R V+ ++ + D A Q L Sbjct: 229 DYVVLSPALLEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLI 288 Query: 291 -------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPV 341 + G F Q A + + S + G Y P AD + + K G + Sbjct: 289 NDVYAKIQSGMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKP 348 Query: 342 IHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + +GY I V P+ + SF+ K + ++ TKA+ + L E + S Sbjct: 349 VKTQYGYHIIEVQ--VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDS 406 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG---KDDPLSKDHTVA 457 ++ +++ K ++ + K + I + ++F K+ + + Sbjct: 407 LEVVAQEVKAARVE------SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQ 460 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 L +G +W+++++ A + L EV T+VK K E+ + KA Q +K Sbjct: 461 LANGDSIWIKVRDYHSAGIKPLSEVTTEVK-----AKVVEQKAYKAAQ-----AKMASIL 510 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-----VFSGPVE------MVKCFPIE 566 D A ++ +Q+N +N F G+ + FS P + Sbjct: 511 ADFKTQPAAQVVAKSQVN-FENAGTFARSHGLKRAIERAAFSIPAPSKEGMWSATTAKLP 569 Query: 567 NGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 N L V +S V P +E + Q + +L+ AYLKSQ + Sbjct: 570 NELVIVAVSNVDSSVASSLPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADI 622 >gi|319779411|ref|YP_004130324.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9] gi|317109435|gb|ADU92181.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9] Length = 644 Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 98/400 (24%), Positives = 178/400 (44%), Gaps = 26/400 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE RK S+ WV I ++++ F+ +G S +V V ++K+ F SW Sbjct: 1 MLEFFRKHSK-WVLFIIIILIVPSFVFFGTSKYSGMSISEKPLVKVNKEKITERQFNKSW 59 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVS-GATLDQFIEDIGLEADHGR 114 + L + ++G +++ R++ L+K + D L++ A ++F Sbjct: 60 TERLNSLRDQLGNNFKVSEIDTPANRNLWLNKIVDDILITQTANKNKFF------GSDSM 113 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V IA P F D KFS + + + L I +EY ++ VV + Sbjct: 114 VRSAIALDPKF-AVDGKFSMENYNAFLTSANITSQEYENYLRANTGINLVVEPLINSTLV 172 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKRIS 233 L++ K+ + R V + N L W++K ++ YR PEY + Sbjct: 173 PLTTLEELKKHVTKTREVQTKIFANEDFINAVSVDEKELEDWYKKNSEEKYRVPEYVNVE 232 Query: 234 YILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 Y L + + N D L++ YE NK ++ + E R V + +++ A ++ LK Sbjct: 233 YFLLNQKAAVDLVPQPNEDALKSYYENNKNRFSTEERRFVRHIQLDSEERAKAIYEELKT 292 Query: 292 ---KGKKFIQLAE--EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K ++F+ L++ + G + LG K IP + +++F+L K G PV G+ Sbjct: 293 TPNKFEEFV-LSDSLDAGTKNNKGELGFLKKSDIPGIE--NTVFALDKPGITGPVKLGN- 348 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + I V I+ + SF+E+K + N++++ AS+K E Sbjct: 349 SFHIFDVVQIEKAKVKSFEELKDTLVNEVKLQIASDKFAE 388 >gi|269102133|ref|ZP_06154830.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae subsp. damselae CIP 102761] gi|268162031|gb|EEZ40527.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae subsp. damselae CIP 102761] Length = 565 Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/337 (22%), Positives = 158/337 (46%), Gaps = 39/337 (11%) Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146 + +L+ +++ + + ++GL ++ I P F D KF+++ + L R GI Sbjct: 24 RSVLERMINDVLIQKRAHELGLRVSDQQIRDAIFAMPEFK-VDGKFNNEQYNQLLRRSGI 82 Query: 147 NEKEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRH 201 +++ + RTD++ F+G + S+ L ++ + + R + + LN Sbjct: 83 TPEQFAESL-----RTDLLRQQFLGAIEGSDFALSGEVNELRMLESQERVIRTLTLN--- 134 Query: 202 VPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + + A +T+ ++E+ + P ++SY+ + + IE+S+ QA Sbjct: 135 LADFTKKAEASITEEQEKAFYEQNPQQFTRPAQVKVSYVEITGDKLKDSIEVSD--AQAY 192 Query: 257 YEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLS 308 Y ++K+K+ +PE R V ++ ++++A+ LK G F +LA++ S Sbjct: 193 YNEHKDKFSTPEKRQVSHILITGDSAASKEKAEAILAQLKDGANFAELAKKDSDDKFSAK 252 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 D + ++ + D + D+ F+LAK GD + V+ SFGY I + I+P+ F +VK Sbjct: 253 DGGKLEWFEKGVMDPAFEDAAFALAKPGDLSGVVKSSFGYHIILLDGIEPAKAKPFADVK 312 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +I ++ KA +EF A+ T + E + Sbjct: 313 AEIIADIKSQKAG----------DEFYAMQTKLAETA 339 >gi|126668935|ref|ZP_01739876.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] gi|126626598|gb|EAZ97254.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] Length = 624 Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 120/551 (21%), Positives = 240/551 (43%), Gaps = 59/551 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ +AKI + +L + +WG+ + SG V +V Q + F+ Sbjct: 1 MLQDMRENAQGTIAKIIIGLLILSLSVWGMDAIIGGFSGEPEVATVNGQDITEREFLRVV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDK-----KILDNLVSGATLDQFIEDIGLEADHGRV 115 + E SQ + ER LD+ +L L+ L Q + GL + Sbjct: 61 QLE----SQN--RLSRMERPDPSLLDEDQIRVDVLQALIEEQVLAQDADRQGLALSDADI 114 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRP 174 I + P F D +F+ D FV+ + G+ E+ D K + G+ G+ Sbjct: 115 DALITQMPQFQ-VDGQFNRDQFVTTVRNVGMGVGEFRDAMRKQTVVNQIRAGIVASGVVT 173 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231 SN + + +N++ D+ +LN A+AD N + +++ + ++ PE Sbjct: 174 SNSI---TRLMKIQNQTRDFRLLNI-SASAVADQVNVSAGDIQAFYDSNPNLFQQPEQVD 229 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---- 287 +SY++ ++ I IS++EL Y +++E + E R ++ + +AD Sbjct: 230 VSYVVLSLNALADAIVISDEEL-LTYYQSREADLAREERRAAHILVEDTADADAVVERIQ 288 Query: 288 QSLKKGKKFIQLAEE------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 Q L G+ F LA+E G+ D+ F+ + D + +++FSL + G + Sbjct: 289 QRLADGEDFAALAQELSIDTVSGEQGGDL---GFAGRGVYDPAFDEALFSL-EPGTVSDP 344 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-S 400 + SFG + +++I+ S + D+A Q+R + E+ +E Y + LA + Sbjct: 345 VRTSFGVHLIKLNDIRRSDVPAL----ADVAAQLRDDLSREQAREAYAQARTTLADSAYA 400 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 D + K ++++L D ++ G+ P+ L R +D L+ + L D Sbjct: 401 ADNLEGPAKDLNLELRQADKITRNGGGE-----PFDHAGLVRQLFSEDVLNGGYNTELID 455 Query: 461 GSYMWVQIKESIPARDR--------KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 V ++ AR R L+ V ++ + + KT ++++A+++ + + Sbjct: 456 -----VADNRAVVARVRVYREAEVLPLDGVEDAIRSNLEAEKTRTALAARASEMAAQL-Q 509 Query: 513 EGKNFRDIGKN 523 G++ +DI + Sbjct: 510 AGESLQDIADD 520 >gi|225629761|ref|ZP_03787708.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591385|gb|EEH12478.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 445 Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 101/450 (22%), Positives = 213/450 (47%), Gaps = 28/450 (6%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 +Q + ++ R VD + + V I +P + L +E+ K ++ PEY+ YI Sbjct: 15 EQIYKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQ 74 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 E +I+IS++E+ E+ + K R + +F ++EA+ A ++ ++GK F Q Sbjct: 75 KYFEDQIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQ 130 Query: 299 LAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + EE GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 131 IVEEFGKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAH 188 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 ++KKDI + + K+ E+V + ++ + G+ ++EI + + Sbjct: 189 QISDEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGP 248 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 VD +GKD G V L+ +F ++ K + + D + + V+I + +P + + Sbjct: 249 VDASGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIVPPKLQ 303 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI--N 535 EE + W++ E + ++ ++ ++ D+ + G L+ Q+ N Sbjct: 304 SFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRN 359 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISY 593 ++D +N F + + ++F+ PI+ N + V K +S G + D Sbjct: 360 KVDQQNYPFSF--VEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRV 417 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + L + +I+YL+S+Y V V+ ++ Sbjct: 418 MIS-----LKEQLISYLESKYKVEVNHAIL 442 >gi|148555266|ref|YP_001262848.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1] gi|148500456|gb|ABQ68710.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1] Length = 676 Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 113/522 (21%), Positives = 207/522 (39%), Gaps = 29/522 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ R+A +W+ L ++ V F+I G+ ++ S+ G+S +V + I+ Sbjct: 32 MISFFRRALSSWIILGILALVLVAFIITGV-ESPGSIGGTSNGATVAK--------IDGG 82 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKK----------ILDNLVSGATLDQFIEDIGLEA 110 K + +++ ++ R LD K + + L+ +D + ++ G Sbjct: 83 KVSTNDLLRRVQNQFDALRRERPELDHKSFLAAGGFEGVTNGLIDARAIDAWGKEQGFAI 142 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 + +IA F G F V +RLA+ I+E+E L R ++ V Sbjct: 143 GKRLIDAQIAGMDAFRGITGAFDETVMRNRLAQARISERELRADIAGELMRNQILTPAVA 202 Query: 171 -GMRPSNLLLDQAKRFYFENR--SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 P+ L A E R V I L P P+ A + ++ + P Sbjct: 203 LAPTPAKLARPYAT-LLLEERIGQVGIIPLAAFIDPR--QPTEAEIAAAYKANIAAFTRP 259 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + Y LF + + E+ Y +N + Y + E+R + Q+V PN+ A Sbjct: 260 EARVLRYALFGAEQVAAAAAPTEAEIATYYRENADSYAAREMRGLTQVVTPNETLARSIA 319 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + + G+ A + G S ++ S + + A G GSFG Sbjct: 320 AAARGGQTLAAAAAKAGLEASTLTGQSKAAYGGSAGAAVADQAFAAAAGSVAGPAKGSFG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + + V + + E K +IA + KA E + E ++E+ +A G S E++ Sbjct: 380 WYVVKVDAVTATPGRPLAEAKPEIAALLTRQKAQEALSELAGKVEDAIADGASFAEVAAN 439 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDDPLSKDHTVALPDGSYMW 465 K+ ++ P + G+ + + A P LL F DD + + VA D Y Sbjct: 440 NKLTVVETPALLAGGQPIDRPDWKAPPELGALLKSGFAGSPDDRPTVETVVA--DQQYAL 497 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 + + + IP L +V V +D T + AE + +++V Sbjct: 498 LGVAKVIPPTPLPLAQVRPMVIRDIVTKRAAERAKAIGDKMV 539 >gi|170692414|ref|ZP_02883577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia graminis C4D1M] gi|170142844|gb|EDT11009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia graminis C4D1M] Length = 646 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/409 (21%), Positives = 171/409 (41%), Gaps = 25/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + L+++ VP L + G+ S+ V SV K+ + + N+ Sbjct: 1 MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 59 MRQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D D + LA +G+ +Y + ++ + G S Sbjct: 119 LNDPVISSLKNPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPAAIQGSAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284 ++ ++ EL+ Y+ N Y + ++R L+ +++AD Sbjct: 239 MSPATVAASVQPADAELKKYYDDNIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAD 298 Query: 285 EAFQSLKKGK-KFIQLAEEQ----GKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F Q+A++ G + LG F + I + D++F+L KK + Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEV 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ FGY I V+++KP+ T F EVK IA ++ AS+ +D Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAATKPFDEVKDQIARDLKTQLASKAFSDD 406 >gi|54297774|ref|YP_124143.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris] gi|53751559|emb|CAH12977.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris] Length = 624 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 111/519 (21%), Positives = 225/519 (43%), Gaps = 57/519 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + Q+L ++ A L ++L+ +++ Q G E + Sbjct: 61 RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P F +D FS + L+ + + + + + F+G S Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGT---S 166 Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D+ KRF Y + R DY+ + + A S + ++ ++ + E + Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280 Y+L +H+ + +I+IS D++++ YE+NK Y +P V ++F P + Sbjct: 227 DYVLLSMHDIKSQIKISPDQIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKK 335 ++ADE + LKK + ++ S SD L +K +P ++ ++ +L + Sbjct: 287 QKADEVYSDLKKHPEQF---DKYVASKSDDKLSITNKGILPWITGGQNEYGRALSNLTRP 343 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + + +GY I + KP T S QEV+ + +Q+ A K + ++L + L Sbjct: 344 GQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIMKDQLTSDMAQAKYAQVLEQLTD-L 402 Query: 396 ALGT--SMDEI--SRREKIVSIDLPLVDFAGKD--VKGKEVAAIPYKEQLLFRVFGKDDP 449 + T S+D + S + KI + P GK K K+V + +L + +P Sbjct: 403 SYQTPDSLDPVLDSLQLKIQHTE-PFSRDGGKQPITKNKQVIHAAFSTDVL-ELGNNSEP 460 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + D + S + +++K+ IP+R++ L+EV +KK Sbjct: 461 IQID------NDSVIVLRVKKHIPSREQTLDEVRDQIKK 493 >gi|332141940|ref|YP_004427678.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551962|gb|AEA98680.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 630 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 100/519 (19%), Positives = 221/519 (42%), Gaps = 25/519 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ A + ++ + F+ G+ L S +G++ V +V +++ ++ Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-NGTTAVATVNGEEISAQELERAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + G + S K +LD L++ + Q ++GL ++ Sbjct: 60 QNQRAQMESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F +F ++ F + L + G ++ D+ +++ + + Sbjct: 120 TIVQMPEFQFG-GQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++QA + R+ Y+++++ + ++A + ++ ++ E +++Y+ Sbjct: 179 EVEQANALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLK--- 291 V + + ++ + D ++ Y+ N Y + E R V ++ + A +SLK Sbjct: 239 SVEDLKGRVSVDEDAVRTYYDNNLGSYGTEEQRRVSHILIEAGDDADAAKAKAESLKAEI 298 Query: 292 -KGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F LAE G F + D + ++ FSL GD + V+ FG Sbjct: 299 DSGADFAALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFG 358 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISR 406 Y + ++ +K + +F EV +I + + A EK E L E + ++D+ + Sbjct: 359 YHVIKLTEVKEAQVKTFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAAN 418 Query: 407 REKIVSIDLPLVD--FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 ++DLP+ + ++ E+++ P + F ++ L+ D + L D + + Sbjct: 419 -----AVDLPIQESVLFSRNTAPAELSS-PGLLDVAFSSELVEEGLNSD-IIELDDETVV 471 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 ++ E P R + L+EV ++ K K+ E S A Sbjct: 472 VARVVEHQPQRTQSLDEVREGIEASVKAEKSKEAAESWA 510 >gi|85708717|ref|ZP_01039783.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1] gi|85690251|gb|EAQ30254.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1] Length = 645 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 85/403 (21%), Positives = 172/403 (42%), Gaps = 35/403 (8%) Query: 21 LFVPFLIW-GLSDALFSVSGSST---------VVSVGRQKVPFSSFINSWKQELGMISQK 70 +F+ FL+ L+ A +SGS+T V VG + + + + L + Sbjct: 17 IFIGFLVLVALAFAASDISGSATFGGLTGDDKVAVVGGEPITSNEMSGAMNNALDRARDQ 76 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 + + + GL+++ L+ L+ + QF ++ GL A V EI + F Sbjct: 77 NPTITMPQLVANDGLNRE-LELLIDRFAIGQFAQEYGLRAGENLVNSEILQIGAFRNVTG 135 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPS---NLLLDQAKRF 185 +F + + L R+GI T + R D+ + +RP+ L A R Sbjct: 136 EFDQATYQAALRRQGI---------TDAILRKDIADGLLAQQLLRPAFAAPQLPRAAARQ 186 Query: 186 Y----FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 Y E R ++ + DP++ L ++ + + N+ PE + I + F Sbjct: 187 YAALVLERRQGRIGLVPSSEYAPDGDPTDEQLNTFYSENRANFILPERRTIRFARFGADS 246 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 + E ++ ++ A YE + +Y + E R + V P + A + ++ G A+ Sbjct: 247 VQTVAEPTDAQIAARYEADAAQYAAQERRAISTFVVPTEAAAQALVERIRAGLSLEAAAQ 306 Query: 302 EQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + G ++S L +E + +LA+++F+ +GD G+ +A V +++ Sbjct: 307 QAGFNVSSGEL--LDRESMSSSTSFALAEAVFA-ESEGDVITPQRSQLGWYVARVDDVEN 363 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + S +V+ +IA Q+R + ++ + ++EE + GTS+ Sbjct: 364 TPARSLADVRGEIAAQIRREAVAAQLIDLSSQIEELVDTGTSL 406 >gi|268592032|ref|ZP_06126253.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM 1131] gi|291312424|gb|EFE52877.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM 1131] Length = 651 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/343 (22%), Positives = 153/343 (44%), Gaps = 16/343 (4%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG----FVVNSERARSVGLDKKILDNL 93 + ++ V Q + +++QE + + +G V ++E + ++ L ++ LDNL Sbjct: 66 NSANNAAEVNGQSISREQLQQAFQQERQSLQEYLGDKFSEVASNEESMNL-LRRQALDNL 124 Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 ++ ++Q+ ++ L A ++ I P+F D +F + + L+R IN Sbjct: 125 INNELINQYANELQLSASDQQIEQYIFSMPVFQT-DGRFDSEKYREILSRNNINADSLAA 183 Query: 154 HYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + L+R + F G PS + + + R + +L+ V A S Sbjct: 184 QIRQDLTRAQLGKTFTGTDFALPSEV--KAYAELFMQEREIRTAILDLAEVQAKQTASEE 241 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 L +++ ++++ +PE ++SY+ D +S +E++A Y++N + Y E + Sbjct: 242 ELKAYYDANQNSFISPEKVQVSYVEMDAASMPPAT-VSAEEVKAYYDQNLKNYTQAEQKQ 300 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIF 330 + ++KEA++ LK+G F LA E KS S G ++ S I Sbjct: 301 YSMIQVASEKEANDILNELKQGADFATLATE--KSTDKFSAGQKGLIGWMEAASTPSEIV 358 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 + L +KG + + YVI + +IKP F++V++ I Sbjct: 359 AAKLTEKGQLSAPVKSQNSYVIFRLDDIKPESIKPFEQVEESI 401 >gi|322834042|ref|YP_004214069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602] gi|321169243|gb|ADW74942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602] Length = 626 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/389 (21%), Positives = 177/389 (45%), Gaps = 16/389 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKIILALIILSFILTGVGNYLIGGSGD-YAAKVNGQEIGRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + + Q++G S A S G L ++ L NL+ LDQ+ + +G+ ++ Sbjct: 60 QNQRSRLQQQLGDQF-SALAGSDGYMQQLRQESLSNLIDVTLLDQYSKKLGITVSDQQIK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I +P F D +F + ++ + G D++ +++ + + S+ Sbjct: 119 DAIFATPQFQ-TDGRFDNAKYLQSIQGMGYT----ADNFAQLMKQQLISQQLEQAYGQSD 173 Query: 177 LLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +L + ++R V L+ + A ++A L ++++ K+++ +PE ++ Sbjct: 174 FVLPVESKSLGGLILQSRDVQTATLDTDALAAKQQVTDAELQAFYDQNKNSFLSPEQVKV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI D + K +++ ++ A Y+++K ++ PE R +V +Q +AD LKK Sbjct: 234 SYIEMDAAAMQGKTNVTDADISAYYDQHKSEFGQPERRRYSVIVLKSQADADAVAAELKK 293 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIA 351 G F +LA+ + G P+ +L + +L KG + VI G+ I Sbjct: 294 GTDFAELAKTKSTDALSARQGGDLGWMEPETTLPEFKNANLTTKGQVSGVIKSDSGFFIL 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + ++ P +V+ IA++++ K+ Sbjct: 354 RLDDVTPEQVKPLADVRNTIADKLKQEKS 382 >gi|301632869|ref|XP_002945502.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Xenopus (Silurana) tropicalis] Length = 638 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/417 (21%), Positives = 176/417 (42%), Gaps = 47/417 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE IRK S+ + I L +L +P F++ G+ FS S S V V + S + N+ Sbjct: 63 MLESIRKHSKFGM--ILLFLLVIPSFVLVGIDRNYFSES-SPVVARVNGHDIKQSDWDNT 119 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIED---------IGLE 109 + E I RA+S +D K+LD + ATL++ + D + + Sbjct: 120 HRMESDRI-----------RAQSPSVDAKLLDTPQARYATLERMVRDRVMTAAVQKMHIV 168 Query: 110 ADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 A R+ + P D D + + + +G+ + + + L+ + V+G Sbjct: 169 ASDARLASALKDIPAIAALKRPDGSLDADAYRALVGAQGMTPEGFEANMRHDLAISQVLG 228 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + + A F+ R + N + PS+A L +++ +++ Sbjct: 229 GVLQSAFSTEGQFKLAMDALFQRREIQVARFNAQDFAGKVAPSDADLQTFYQSRTAHFQQ 288 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE + Y++ D+ I +S D+L+ Y++N+E+ E R ++ ++A Sbjct: 289 PEEASVEYLVLDLDAVRAGITLSEDDLRTYYQENRERLAGKEERRASHILVNATQDAPAQ 348 Query: 287 FQSLKKGKKFIQLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSI 329 + K + LA ++ G + S LG F++ + D++ Sbjct: 349 ERETAKARAQELLAQVRQNPGGFAGIAKKNSQDSGSAPSGGDLGFFARGAMVK-PFEDAV 407 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FS+ +KGD + V+ FGY I ++++K SF++ + + +++ +A + E Sbjct: 408 FSM-QKGDVSDVVESDFGYHIIQLTDVKTPQPPSFEQARAKLEAELKQQQAQSQFTE 463 >gi|319763570|ref|YP_004127507.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans BC] gi|330824229|ref|YP_004387532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans K601] gi|317118131|gb|ADV00620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans BC] gi|329309601|gb|AEB84016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans K601] Length = 640 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 91/420 (21%), Positives = 178/420 (42%), Gaps = 53/420 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IRK ++ WV + +++ F++ G+ F GS V V + + + + N+ Sbjct: 1 MLESIRKHTK-WVMGLLFLLIIPSFILVGIDRNYFG-GGSPVVARVDGKDITQADWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLE---------A 110 + E I RA+S G+D K+LD+ + ATL++ + D L+ Sbjct: 59 RMESDRI-----------RAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQKMHMLT 107 Query: 111 DHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 R+ E+ P D + + + +G+ + +S + V+G Sbjct: 108 SDARLARELQSIPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDISVSQVMGS 167 Query: 168 FVG----GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V G S L LD F+ R + + + ++A L +++ + Sbjct: 168 VVASAFAGPAESKLALDA----LFQRREIQVARFDPSAFVSKVAVTDADLEAYYKAHLAK 223 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 ++ PE + Y++ D+ + I ++ D+L+ Y++N + E R ++ K+A Sbjct: 224 FQQPEQATVEYVVLDLDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHILVNAAKDA 283 Query: 284 DEAFQSLKKGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLA 326 A + K K +F ++A ++ G + S LG F + Sbjct: 284 PAAEREKAKAKAQELLAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGHGAMVK-PFE 342 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 D++FSL KKG+ + V+ FGY + ++++K SF+E++ + ++R +A K E Sbjct: 343 DAVFSL-KKGEISDVVETDFGYHVIMLTDVKTPRQPSFEELRPSLEAELRQQQAQRKFAE 401 >gi|119897859|ref|YP_933072.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72] gi|119670272|emb|CAL94185.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72] Length = 631 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 92/409 (22%), Positives = 168/409 (41%), Gaps = 34/409 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 M + +R R VA+I L +L +PF +GL DA F G V V + + F + Sbjct: 1 MFDAVRNNKR--VAQIILALLIIPFAFFGL-DAYFKDGPGGGEVAVVDGAPITAAEFDRA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ + ++G V+S S L + +L+ +VS L ++ D + ++ I Sbjct: 58 LRERQDRLRNEMGGPVDSALLESPALRRAVLETMVSQRLLARYAADRHMVVTPQQLQETI 117 Query: 120 ARSPLFHGKDNKFS----HDVFVSR-LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 A FH ++ +FS DV ++ + G + D + L+ + F Sbjct: 118 AAVEAFH-ENGQFSLQRYQDVLRAQNMTPAGFEARLAQDVRIQQLAASIGEAAFTPAASA 176 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 LL Q E R V + ++ +++ + P + Y Sbjct: 177 KRFLLAQ-----LEEREVRELRFPASRYLGEVKLADGAAQAFYDANAAGFEQPARLKAEY 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------- 283 ++ D K++++S++E++A Y+ N ++ PE R ++ A Sbjct: 232 VVLDEAALAKQVKVSDEEVRAFYDGNPGRFGQPEERRARHILIQVDAGAPEAEVAKAKAA 291 Query: 284 -DEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 DE +L K +F LA ++ G + LG F + + D+ F A KG Sbjct: 292 IDEIAATLAKDPGRFEALAKASSQDSGSAARGGDLGFFGRGAMVK-PFEDAAFGQA-KGV 349 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 PV+ FG+ I V++IKP+ T S V+ +I +++R A + E Sbjct: 350 VGPVVRSDFGFHIIQVTDIKPATTRSLDSVRGEIVDELRKQAAGRRFAE 398 >gi|296157831|ref|ZP_06840665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. Ch1-1] gi|295892077|gb|EFG71861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. Ch1-1] Length = 645 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 86/409 (21%), Positives = 170/409 (41%), Gaps = 25/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + L+++ VP L + G+ S+ V SV K+ + + ++ Sbjct: 1 MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 59 MRQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D D + LA +G+ +Y + ++ + G S Sbjct: 119 LNDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFP-----------NQKEAD 284 ++ S+ +L+ Y+ N Y ++R L+ +++A+ Sbjct: 239 MSPATLATSVQPSDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F QLA++ + S LG F + I + D++F+L KK + Sbjct: 299 ELLAQIKAHPDQFAQLAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAITKPFDEVKDQISKDLKTQLASKAFTDD 406 >gi|258405892|ref|YP_003198634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium retbaense DSM 5692] gi|257798119|gb|ACV69056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium retbaense DSM 5692] Length = 626 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 104/528 (19%), Positives = 230/528 (43%), Gaps = 40/528 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W K ++ + F+ WG+ + ++ V V + + F ++ Sbjct: 1 MLDAMRKNAQSWAIKFLFALIILVFVFWGVGN--LGNDQATVVAEVQGEAILIRDFQQAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + +K ++ E + L +++L++L++ L + + +GL V + Sbjct: 59 QRTVENLRRKQP-DISREDFEQMQLKRQVLNDLITSQLLFREAKKLGLAVTAPEVRQYVQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P+F D +F + L + ++ T+ L T+ + V P+++ Sbjct: 118 QMPVFQNADKQFDPSRYEQLLRANQLTPAQFEADLTRSLL-TNKIQRAV--KLPASVSEA 174 Query: 181 QAK---RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 QAK F E ++Y + + P +A P+ + ++++ + ++ P + Y+L Sbjct: 175 QAKDLFAFSQEKARMEYALFAWQDQPGLA-PNEEAVKHYYQENQKQFQRPARMEMDYLLL 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTV---------EQLVFPNQKEADE 285 +S++E++A YE N ++ E R + +Q V +++A Sbjct: 234 TPEGLAAAQPVSDEEIKAYYEANPGEFERQEELKARHILIEVPEGADDQQVTEAREQAQA 293 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + L+ G +LA E S LG F++ + V ++ G+ + + Sbjct: 294 LVERLRDGADLAELAREYSDGPSSAQGGDLGWFARGEM--VEAFEAAAFALDTGEISDPV 351 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 SFG+ + V + KPS T F+EV+ +I ++ KA++K+ + + + G S+ Sbjct: 352 RTSFGFHVITVEDRKPSGTQPFEEVQDEIRQEIGADKAAQKMSDLLDEALDLILSGKSL- 410 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY-KEQ--LLFRVFGKDDPLSKDHTVALP 459 ++ ++++PL +G + + I KEQ LF + P T L Sbjct: 411 ----KDTAATLEIPL-RHSGPFTQAQGPEGIELDKEQRETLFTL----TPGEVTDTPLLL 461 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 D Y+ + + PA+ R+L+ V ++ K + E+ + A ++ Sbjct: 462 DNGYLIAKQTDFSPAQPRELKAVRDQIETTLKREQGLEKAKAAAENVL 509 >gi|90579274|ref|ZP_01235084.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum S14] gi|90440107|gb|EAS65288.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum S14] Length = 630 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/415 (22%), Positives = 182/415 (43%), Gaps = 33/415 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M+E +R+ + + KI L ++ F+ G+ L G+ V + V +++ +F + Sbjct: 1 MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL--AGGNEQVAAKVNDKEISQRAFEQA 58 Query: 60 WKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ + + Q++G + + A +L+ +V+ ++Q ++GL +V Sbjct: 59 YQNQRNQMQQRLGDYFSTLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D F+++ + L R GI+ +++ + K + R + G N Sbjct: 119 QAIVAMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALEGSDFALN 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ------WFEKYKDNYRAPEYK 230 L++ ++ + R V + LN +AD ++ V ++EK K + P Sbjct: 178 NELNELRKLESQERVVRTLKLN------LADFTDKVTVTDEEAKAYYEKNKTQFTRPAQV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---- 286 ++SYI I+I++ E +A Y ++K KY + E V ++ +A +A Sbjct: 232 KVSYIELSDKNLVNNIKITDKEAEAYYNEHKSKYSTAEKIQVSHILVKGDSDASKAKAEA 291 Query: 287 -FQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPV 341 LK G F +A++ G F K + D + + FSLAK GD + + Sbjct: 292 LLAELKAGANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEKAAFSLAKPGDMSGL 350 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + SFGY I + I+ F +VK I +++ ++V E + +L+ LA Sbjct: 351 VKSSFGYHIILLDGIEEPKVKPFADVKASIVAELQ----EQQVAEQFYKLQSKLA 401 >gi|304311294|ref|YP_003810892.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1] gi|301797027|emb|CBL45240.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1] Length = 641 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 105/533 (19%), Positives = 216/533 (40%), Gaps = 43/533 (8%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ R WV K LV++ VPF+I G+ + +F+ + V ++ + + + Sbjct: 1 MDAFRSMLTGWVGKSLLVLISVPFVIVGI-EGIFTSGRDRAALVVDDHEISNAEIQQAVE 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I +++G V+ + + + L+ L F + G + Sbjct: 60 NRRTQILEQLGKGVDPSFITAEMVRPAVEQELIKRQLLIGFADKDGFSVPEEAAKSYVRA 119 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F +FS + S L+R GI K +++ + L + G G + +++ Sbjct: 120 VPQFQTPAGEFSQPLLNSYLSRAGITAKGLLNNVSTSLLTEQIQGGLGGSAFATPADVER 179 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + R + + A +PS+ LT+++E ++D+Y++ E ++SY+ + Sbjct: 180 ILSLDKQVRDIGVAYIKPEEFRAGINPSDFDLTEYYEAHQDDYQSEERVKVSYVHLSQEQ 239 Query: 242 KEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291 E IS+ E+Q + ++ + E R E ++F + A++A LK Sbjct: 240 FAANDEPISDAEIQDKLDEMIKDAEGNERRHAEHILFETGSKHSDAEARSLAEKALAELK 299 Query: 292 KGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 GK F +LA+ Q G L G ++ E+ D++F+L D + V+ Sbjct: 300 AGKNFEELAKAQSEDFESAKNGGDLGYAGRGVYAPEF------EDALFALQAPNDISGVV 353 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FGY I + + Q+ + I ++R + + + ++ + Sbjct: 354 KTEFGYHIIKLIGVDEPPLPDMQKSRDHIIAEIRKERIASNIGTIIDDIDRMAFESNDLS 413 Query: 403 EISRR-EKIVSIDLPLVDFAGKDV-KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 EIS + ++ + L G + +V + ++L D + L D Sbjct: 414 EISAQYDQKPEVSDWLTRKGGTGIFADPKVVEAAFSSEILQEQRNSD-------VIELED 466 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 GS + +++ + P R+ L+EV V++ + ++SKA +L E +KE Sbjct: 467 GSLVVLRMDQHEPVRELSLDEVKDKVRE--------QVIASKAQELATEQAKE 511 >gi|218781789|ref|YP_002433107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] gi|218763173|gb|ACL05639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] Length = 624 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 121/559 (21%), Positives = 240/559 (42%), Gaps = 51/559 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++R+ + +W+ KI L ++ + F ++ + F G+ V V + + ++F + Sbjct: 1 MLSMMREHATSWIIKILLGIIVLVF-VFSFGYSSFQNRGNRLAV-VNGETISRNTFERMY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K +K G + + R + + D+LV L Q D+G++ + +IA Sbjct: 59 KNVYDYNREKFGDSFDYDLLR-----QNVFDDLVDNVLLLQHARDLGMQVTEDELVQDIA 113 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++ +F +F + L+R G+ K+Y + + T + + + S+ + Sbjct: 114 QTQVFQTSSGQFDPKRYEYILSRSGVTSKDYEAEKARNMLSTKIRSYLMAMAQVSD---E 170 Query: 181 QAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +A+++Y + S+ Y++ + + + +++ + +Y ++SY+ F Sbjct: 171 EARQWYNWDAKQVSMKYVLFEPSTFTDVVATEDQI-QAYYDAHSADYETLPMAKVSYLYF 229 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--AFQSLKK--- 292 + + K++ I +E++ Y+ N + Y+ + ++ K+A E A ++LKK Sbjct: 230 NPKDFLKEVSIPQEEIELFYDDNLDSYYEDQQVHARHILISLAKDAPEEKAAEALKKAQE 289 Query: 293 -------GKKFIQLAEE-----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 G+ F +LA+E K+ D LGSF + + D+ F+L G+ + Sbjct: 290 IEAKAKAGEDFAELAKEFSDGPTAKNGGD--LGSFPRGRMVK-PFEDAAFAL-NAGEISD 345 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + FG+ I V IK + T EV+ I +++ A + E Y E S Sbjct: 346 PVRTDFGFHIIKVEEIKEARTKELSEVEDSIRSKL---AADVALDEAYNAAEAAFDNLLS 402 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG--KDDPLSKDHTVAL 458 ++++ ++L D+ + +G A P +++ VF KD S + Sbjct: 403 DMDMAKAAADAGVELKTTDYFTE--QGPAGVANP--QEMADEVFDMYKD---SFSDVLQF 455 Query: 459 PDGSYM-WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 DG Y+ W+ K+ PA +LEEV V D K A+ KA + LE K GK+ Sbjct: 456 DDGFYIVWMLDKK--PAIIPELEEVKAKVAADVKKEVMAQAAIDKAAEF-LEEVKGGKSM 512 Query: 518 RDIGKNLGASLLTTNQINR 536 D ++ T R Sbjct: 513 EDAAAAYNVTVKNTGFFKR 531 >gi|329119300|ref|ZP_08247987.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC BAA-1200] gi|327464647|gb|EGF10945.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC BAA-1200] Length = 603 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 90/384 (23%), Positives = 172/384 (44%), Gaps = 40/384 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIG 72 AKI L ++ + F+ +G + +GS +V VG +K+ + + + Q LG + Sbjct: 12 AKIMLGLIALTFVGFGAGGII--ATGSDYIVKVGGEKISTQNVQEAQREQNLGSGQDALA 69 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++ +ERA + K++ VS A L Q I D P FH ++ +F Sbjct: 70 YL--TERAY-LAEGAKMMGIGVSEAQLKQVIVD----------------DPGFHDENGRF 110 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S F L + G+ E+ ++++ + ++V + GG S+ +Q +R + Sbjct: 111 SEAKFRLFLQQGGLTEERFLENLRNSFALQNLVNLAGGGNIVSSAQAEQYAALMLADREI 170 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 I L+ + A +A L +++K K YR P+ + YI + ++ DE Sbjct: 171 RSIALDPKTFAAQIKADDAALKAYYDKDKSKYRLPQAVKYQYIELSPRTLAESQKVGEDE 230 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGK----KFIQLA---- 300 L+ +E+ ++K +P R V ++ + +A EA + L + K KF +LA Sbjct: 231 LKKAFEE-QQKNAAP-TREVAHIMLKTEGDAAKTKAEAEKILAEAKAAPEKFAELAAKYS 288 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ G + + SLG+ K+ + ++ +L +GD ++ G + I V N++ Sbjct: 289 QDAGTAQTGGSLGAVGKDSPLPEAFKTAVSALG-QGDIA-LVEGEGAFHIVRVGNVRSGL 346 Query: 361 TVSFQEVKKDIANQMRITKASEKV 384 SF+E K + ++ KA E V Sbjct: 347 --SFEEAKPALEAALKEKKAREAV 368 >gi|254492046|ref|ZP_05105223.1| PPIC-type PPIASE domain protein [Methylophaga thiooxidans DMS010] gi|224462743|gb|EEF79015.1| PPIC-type PPIASE domain protein [Methylophaga thiooxydans DMS010] Length = 613 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 131/640 (20%), Positives = 259/640 (40%), Gaps = 59/640 (9%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFINSWKQELGMISQKIGF 73 + + ++ +PF +WG++ L +G+S VV V +++ + S +Q + +G Sbjct: 2 LIVGLISIPFALWGVNSYL---TGASDVVVAEVNGKEITQAELQQSLQQYRDQMRNMMGE 58 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + + +LD L+ L E +G + + I +P F +D +F Sbjct: 59 QFDPAMFEGAMVKRNVLDGLIEQQLLRDANEKLGQRINDAEISQVIRTTPAFQ-RDGEFD 117 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + LAR G + Y L + + + Q R + R + Sbjct: 118 AEYYNMVLARVGYSPASYEAQLRADLMSQQLTQNIETTALATEKDVRQTLRLQEQRREIA 177 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 Y V+ + ++ + Q ++ ++ NY++PE +++YI V + ++ D+L Sbjct: 178 YGVVPVQEYVEQVSVTDDEVQQLYDNHQSNYQSPEQLKLNYIELSVATISSTLTVTEDDL 237 Query: 254 QAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQS----LKKGKKFIQLAEE----QG 304 + Y N+ ++ P+ R L+ + +A ++ L+ G+ F LAEE G Sbjct: 238 KQFYADNQSQFVGPQQRRASHILIEGDDNDAQTTIEAIATRLENGEDFSSLAEELSQDPG 297 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F ++ + D + ++ F+L GD + + FGY + +++IK F Sbjct: 298 SASQGGDLGFFERDVM-DPAFEEAAFALETIGDVSEPVKTEFGYHLIKLTDIKQPEGQEF 356 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFAGK 423 +V+ ++ R +A Y + E+ L E + + DL L + Sbjct: 357 SQVRDEVEKLYRRQQAESIF---YDKAEQLANLSY---ENPDNLDVAADDLELQIKTTES 410 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKD---HTVALPDGSYMWVQIKESIPARDRKLE 480 + + I +++++ FG DD L D + L D + + P+ + Sbjct: 411 FTRNGTESGIASEQKVIAAAFG-DDVLKNDLNSAVIELADDHLVVIHKNSYTPSTVLPFD 469 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 V +++ + A E + + + VL+ K+G N LL T Q E Sbjct: 470 SVSPAIEQQL-LFEKASEKAREHGESVLKELKQG--------NQATDLLPTWQ------E 514 Query: 541 NKFFGY--DGIS-QVFSGPVEMVK--------CFPIENGLSYVVFKVT---NSKVGPVQE 586 +F+G D IS Q+ M K F NG +Y+V ++T K V+ Sbjct: 515 AEFYGRESDNISMQILQRAFAMSKPESGSKFAGFTANNG-NYIVIELTAVDEGKPADVEA 573 Query: 587 KDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +D+ LTQ+ + + I L+ Q + + D +Q Sbjct: 574 EDQQALKQQLTQVHANAEVQAFITSLREQADIEILDETLQ 613 >gi|68249587|ref|YP_248699.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 86-028NP] gi|68057786|gb|AAX88039.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 86-028NP] Length = 622 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLEDEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|315634906|ref|ZP_07890188.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC 33393] gi|315476458|gb|EFU67208.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC 33393] Length = 615 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/388 (21%), Positives = 168/388 (43%), Gaps = 28/388 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + AS W +K + V F+I ++ L++ +S V +++ +F N + Sbjct: 2 VMEKLHGASTNWASKFLFGFITVTFVISSMAGYLYTRVDNS-AAKVNGEEISQQAFQNQY 60 Query: 61 K-QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + Q+I A+ L +++L +L+ L Q+ ++ L R+ EI Sbjct: 61 NIASRNLTPQEI-----DSPAQVANLKRQVLASLIDQELLRQYANELKLGVSDARIKQEI 115 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P F + KF + ++ L GI+ + Y + + L + G ++ Sbjct: 116 VTTPTFQN-NGKFDNTLYQQTLQNNGISAETYAGYVREALRLEQLQSGL--GTTTFSVPA 172 Query: 180 DQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q K + +F++R + L+ + A + S+ + +++ +K + PE ++ Y+ Sbjct: 173 QQEKLTKLFFQSRQIRLANLSLANEIAKQEVSDEEIQAYYDAHKAEFTIPETVKVQYLDL 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 E I I++ E+ Y+ NK ++ + + + + +++A E +Q L+ G F Sbjct: 233 SGAAMENNINITDVEIAQYYQDNKPQFTTQGQQRLAHIQVKTEQQAQELYQQLQNGANFA 292 Query: 298 QLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 LA+ E+G LS +S G F K + D+ +LA G ++ ++ Y Sbjct: 293 DLAKNHSIDPTSAERGGDLSWVSAGEFPKVF------EDAANALA-VGQYSQPVNLDNHY 345 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMR 376 I V K + VK IA Q+R Sbjct: 346 HIILVEERKEPQLQPLESVKAQIAAQIR 373 >gi|325274293|ref|ZP_08140404.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51] gi|324100576|gb|EGB98311.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51] Length = 623 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 104/522 (19%), Positives = 224/522 (42%), Gaps = 29/522 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKSIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKLLREEALKGLISRKLLLQGAEDAKFAFSDAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ D ML+ ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFRD----MLAEEMLIGQLRTGLAGSSFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + E ++ D+ L + PA S+A + ++++ + +P+ I YI Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDAEVKAHYDQHAKEFMSPDQVVIDYIELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 +++++++EL+A+YEK ++++ + + V V Q + A+E Q L Sbjct: 236 KSAYFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+ F LA+E G + + LG F+ + D + ++++ L + G + + FG Sbjct: 296 KGENFATLAKEFSQDPGSAGNGGDLG-FAGPGVYDPAFEEALYKL-QDGQVSAPVRTQFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y + + ++ SF +K + ++ ++ + K+L++ + + + ++ Sbjct: 354 YHLIKLLGVQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEASDLAQPAQD 413 Query: 408 EKI-VSIDLPLVDFAGKDVKG-KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + V P G+ + + V + E++L D + + L + + Sbjct: 414 LNLKVHTSAPFGREGGEGITANRSVVQAAFSEEVL-------DEGANSTAIELDPETTVV 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 +++KE LE V ++++ K E+ +KA++L+ Sbjct: 467 LRVKEHRKPEQLPLEAVAQNIRQHLAKEKATAELKAKADKLI 508 >gi|317047179|ref|YP_004114827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b] gi|316948796|gb|ADU68271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b] Length = 622 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 113/517 (21%), Positives = 221/517 (42%), Gaps = 56/517 (10%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG-MISQKIGFVV 75 F++ +LI G SD V+G +S +++ N +Q LG SQ + Sbjct: 25 FVLTGVGNYLIGGNSDYAAKVNGHE--ISRAELDQAYNTERNRQQQMLGDQFSQ-----L 77 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 S + ++ L L+ A LDQ+I+D+ + +V I F + KF + Sbjct: 78 ASNEGYMQQMRQQALSQLIDQALLDQYIKDLHIGISDDQVKDAIFNQQAFQ-TNGKFDNV 136 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG-------MFVGGMRPSNLLLDQAKRFYFE 188 + + G +Y + K L+ ++ M G ++ L+D + Sbjct: 137 KYNGLITSMGFTADQYAEALRKQLATQQLINAVANTDFMLKG---ETSKLVD----LVAQ 189 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 R + ++ + A ++ ++Q+++++++++ APE R+SYI D ++ Sbjct: 190 QREIRQATIDVNALAAKQTVTDDEISQYYQQHQNSFMAPEQFRVSYIKMDAASLQENA-- 247 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S ++Q+ ++++K Y P+ + + +A+ +LKKG+ F LA+ KS+ Sbjct: 248 SEADIQSWFDQHKADYSQPQRNRYSVIQTKTEADANAVLDALKKGEDFATLAK--SKSID 305 Query: 309 DIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 IS +G PD L ++ +L +KG + VI S G++IA + +I+P Sbjct: 306 PISARKGGDMGWLEPNTTPD-ELKNA--NLTEKGQLSGVIKSSVGFLIARLDDIQPEQVK 362 Query: 363 SFQEVKKDIANQMRITKA-------SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 EV +A++++ KA +KV E E LA + K+V D Sbjct: 363 PLSEVHDAVADKVKQEKAVDAFYKMQQKVSEAASNDNESLAGAAEASGL----KVVETDW 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472 D +D+ V +Q +F + G++ + + DG +V +I E Sbjct: 419 FSQDSVPQDLDFDAV------KQAVFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHK 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 P + L++V + K K ++ +AN+L+ + Sbjct: 473 PEAVKPLDQVKAQIADTLKHDKATQQAKEQANKLLAD 509 >gi|254796993|ref|YP_003081830.1| Rotamase family protein [Neorickettsia risticii str. Illinois] gi|254590229|gb|ACT69591.1| Rotamase family protein [Neorickettsia risticii str. Illinois] Length = 594 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 2/222 (0%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 S S V SVGR+K+ F++ +K+ GF + + + +G+ + +L L+ Sbjct: 40 SRSDVVASVGREKILVDDFVSEYKKHERYFQSMFGFGLTDTQLKDIGVGRIVLTTLIQDK 99 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 ++Q + +GL D +I ++P F+ ++ KF L R + E+EYI Sbjct: 100 VIEQLFKQMGLHIDTSIAIDKIKKNPAFN-ENGKFDRAKLDDFLDRNDLTEREYIRKVKC 158 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + + V G F L + F + R V +N +P + P+ + L ++ Sbjct: 159 EIGKDFVFGPFFNIQGEYVKLAELFYNFEYGLREVSITKVNKNALPILPVPTESELVSFY 218 Query: 218 EKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYE 258 E+ KD + + EY+ YIL + + K + +EI+++++Q +E Sbjct: 219 EENKDKFFSDEYRTAEYILISEDNVKPELVEIADEDVQKSFE 260 >gi|229843938|ref|ZP_04464079.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1] gi|229812932|gb|EEP48620.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1] Length = 622 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|309973498|gb|ADO96699.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R2846] Length = 622 Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|148828172|ref|YP_001292925.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittGG] gi|148719414|gb|ABR00542.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittGG] Length = 622 Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|262376134|ref|ZP_06069364.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145] gi|262308735|gb|EEY89868.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145] Length = 621 Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 110/525 (20%), Positives = 210/525 (40%), Gaps = 75/525 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E RK + W+ K+ LV+ P + G+ + FS S SV ++ S Sbjct: 1 MEAFRKVIKGWLGKVLLVLFLTPLALVGI-EGYFSSGNSDAAKSVNGTEISQKELESLTK 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 S+K++ + ++N +D+K +D LV+ L Q E++G+ ++ Sbjct: 60 SFKEQYLSYANGDETLLNQSF-----IDQKAMDTLVARTLLLQQAEELGISLSDQQIEQM 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMR 173 IA+ P F +D KFS+ ++ + L G+ + I DH KMLS T F+ Sbjct: 115 IAQQPTFQ-QDGKFSNALYENYLKSIGMTNRALIESLRKDHALKMLSST-----FLDYPL 168 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 S + + Q E R + +N ++A + ++EK+K ++ P + Sbjct: 169 VSPVEMQQIADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDVD 228 Query: 234 YILFDVHEKE-KKIEISNDELQAEYE---KNKEKYFSPEIRTVEQLVFPN-------QKE 282 Y++ + + + + +++ ELQ Y +++ P+++ + L+ + +K Sbjct: 229 YVVLKPSDIQVQSLAVTDAELQEAYTAFVATQKQAVKPDVKHI--LITADSRSDAEAKKL 286 Query: 283 ADEAFQSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 A E +K G F Q A + +G +L+ G F + D S Sbjct: 287 ATEIAAKIKAGTTFAQAAAQYSEDPESKSKGGALAVYEEGVFGTAF-------DQTVSSL 339 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G + + +GY I V P V SF+ K ++ + K S + L Sbjct: 340 KSGQVSAPVKTDYGYHIISVQT--PDVAVPSFESQKARLSEEALAAKKSNAFSDTVNTLN 397 Query: 393 EFLALGTSMDEISRREKIVSIDL----------PLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + + S+D +++ K V + P++ A VK LF Sbjct: 398 DMVVGSDSLDVVTQEVKGVQVQKAQGVTLSTRDPVLSDANLKVK-------------LFN 444 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 K+ + ++ L +G W++++ A ++ L E VK Sbjct: 445 NDVKNGDRNASTSIQLANGDVAWIKVRNYHAAGEQTLAEAKPRVK 489 >gi|317485995|ref|ZP_07944850.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922768|gb|EFV43999.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 629 Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 94/445 (21%), Positives = 191/445 (42%), Gaps = 41/445 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINS 59 ML++IR +++W KI ++ + F+ WG+ G STV+ +V + + F Sbjct: 1 MLDLIRANAQSWGVKIAFGIIILVFVFWGVGGL---TGGPSTVILTVNGEPITIQEFQRK 57 Query: 60 WKQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q + Q++ +++ +++ L ++++ NL+ + Q + +G+ + Sbjct: 58 YEQ----LEQQVRAQYPDLDAAGLKAMQLKQQLIQNLILENLIMQEAKRVGIVVTPVELR 113 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLARE----GINEKEYIDHYTKMLSRTDVV-GMFVGG 171 I P FH + KF D +V + + G E E ++ R DV G FV Sbjct: 114 KLIESFPAFHNAEGKFDPDAYVRVIKAQRNTPGNFEAELRNNMLMNKLRADVTAGAFVPE 173 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +L R+ E R ++Y+ + +A + ++E + ++ P Sbjct: 174 AEVRDLF-----RYEGERRILEYVFYPLEDYTSKVTVDDAQIKDYYEANQASFTVPPQAD 228 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEA------- 283 + Y+L IS+ + YEKN ++ +PE +R L+ + K + Sbjct: 229 VEYLLIGAEALAAAQNISDAAVSEYYEKNAAQFATPEMVRARHILILSDAKASAEDQAKA 288 Query: 284 ----DEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAK 334 +E + +K G+ F ++A E+ G LG F+ + +P+ A F+L Sbjct: 289 KAKIEEIAKRIKAGEDFGEVAKEVSEDPGSGPQGGELGWFAHGQMVPEFDKAS--FAL-N 345 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + + FG+ + + K + EVK I ++ +AS KV+E ++++ Sbjct: 346 PGELSEPVKTQFGWHLIQLEEKKAAGQKPLDEVKDQIRTRLAQDEASGKVQEALEQVQLA 405 Query: 395 LALGTSMDEISRREKIVSIDLPLVD 419 + G S+ E K+ + LV+ Sbjct: 406 VIGGKSLKEAGEPLKLAPQETGLVN 430 >gi|302383248|ref|YP_003819071.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193876|gb|ADL01448.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 638 Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 121/585 (20%), Positives = 229/585 (39%), Gaps = 56/585 (9%) Query: 1 MLEIIRKASRT-WVAKIFLVVLFVPFLIWGLSDA-LFSVSGSSTVVSVGRQKVPFSSFIN 58 M+ + R +++ W A +F V+L + FL+ G S +FS G +V+ G + V F Sbjct: 1 MISLFRAFAKSKWAAGLF-VLLILSFLVVGGSQTDIFSSLGPKHIVTAGDRSVDALQFRT 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++ + ++ G V +E + + L+ + + G+ V Sbjct: 60 EFERVRTGMQEQAGRPVTNEDLVKENVHVRYLEGQTNRLGFLDWAYKAGIRVSEELVLTR 119 Query: 119 IARSPLFHGK-DNKFSHDVFVSRLAREGIN----EKEYID-----HYTKMLSRTDVVGMF 168 I P F + +F + LA + + E E+ D HY + Sbjct: 120 IREIPAFFNQVTGQFDQAQYEQALAAQNVTPVMLEDEFRDTAVSQHYGTAIQ-------- 171 Query: 169 VGGMRPSN----LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 G+R LL QA F+ R + + P++A LT + + Sbjct: 172 -AGLRTPRIYGALLAGQA----FQVRDGRWFEVTQAMAGTTPAPTDAQLTAFINENAAQL 226 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 R PE++ + +LF+ I + + K+ +PE RT L Q AD Sbjct: 227 RRPEFRIATVLLFNDAPGFTPPAIPEARVVERFNFRKDALSTPERRTFTTLTVSTQAAAD 286 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +L+ G+ +AE S+ + + +PD ++A ++F LA P I G Sbjct: 287 RIAGALRAGQTPQAVAE--ANSIQPAVYDAQPRSALPDPAVATAVFGLAANQVSAP-IQG 343 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 G+ +A VS I P + V++ + +++ +V Y R+E + T + Sbjct: 344 RVGFTVAKVSVILPGTPATLDSVREAVTAELQEEDMKARV---YARVEAYEKARTEGKPL 400 Query: 405 SRREKIVS---IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF--GKDDPLSKDHTVALP 459 + + V + LP G+ G+ + A P Q + + G+ D + Sbjct: 401 AAAAEQVGARFVQLPPFTQDGRLPDGQPMNAPPQILQSAYALTKGGESDVIDAGQ----- 455 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 G Y +++ + PA L E+ + + W + A +S+KA +L + G++ Sbjct: 456 -GQYFVLRLDDIRPAALPTLAEIRGPLAEQWTQRENARRLSTKAEELATRV-RGGQDIAA 513 Query: 520 IGKNLGASLLTTNQINRMDNENKFFG---YDGI-----SQVFSGP 556 + + GA+L+ + + G +G+ QVF+GP Sbjct: 514 VAASAGATLINRTGLQQNAETQTALGQGVLEGLFGQARGQVFTGP 558 >gi|319897486|ref|YP_004135683.1| peptidyl-prolyl cis-trans isomerase d [Haemophilus influenzae F3031] gi|317432992|emb|CBY81363.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae F3031] Length = 622 Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELEKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|301169728|emb|CBW29329.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus influenzae 10810] Length = 622 Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|145628054|ref|ZP_01783855.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21] gi|144979829|gb|EDJ89488.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21] Length = 622 Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGNLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|148653423|ref|YP_001280516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. PRwf-1] gi|148572507|gb|ABQ94566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. PRwf-1] Length = 624 Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 85/422 (20%), Positives = 179/422 (42%), Gaps = 20/422 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58 +E IR ++W +IFL++ P +I GL S + V VG Q + + + +N Sbjct: 1 MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFSGASSVNEVAKVGDQTISRAEYQDGLN 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + EL + V + + L+ ++L L++ A L + +G+ + Sbjct: 61 GRRNEL------LQGGVEASAINTQALNSEVLKGLINRALLRNQTDHLGMHVSDAAINNL 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-GGMRPSNL 177 + + P + ++ +FS+D F L ++GI + + Y + L+ + + P + Sbjct: 115 LLQDPQYLDENGQFSNDRFAFALQQQGITKDQLFAQYRQQLNLMQLYASVAQTAVYPESQ 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + D E R V L S+ ++ ++ + K + ++Y+ Sbjct: 175 IHDLLA-LQLETRDVWVYRLPWEQFKDKVSVSDKEISDYYNENKSKLNSRAMVDLAYVSL 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEA--DEAFQSLKKGK 294 D K +++ ELQA+Y+ K ++ + V Q LV ++ EA + Q LKKG+ Sbjct: 234 D-PSKLPVEKVTQAELQAQYDDYKARFVGNSKQKVSQILVTGSKAEATMQQIEQRLKKGE 292 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-----IFSLAKKGDFTPVIHGSFGYV 349 F +A+E + + G + D AD S +KG+ + + SFGY Sbjct: 293 SFAAIAKELSEDPVSAAKGGDIGTFNADAFGADGQKVAQALSGLEKGEVSAPVKTSFGYQ 352 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + V++ S + ++ ++ Q + K + + + + + G +++I+++E Sbjct: 353 LFKVTDKSGDSVPSLESMRDELTAQAQRQKREQLIADKITSINDMATDGVGIEDIAQQEG 412 Query: 410 IV 411 + Sbjct: 413 LT 414 >gi|260580093|ref|ZP_05847923.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW] gi|260093377|gb|EEW77310.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW] Length = 622 Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|30995417|ref|NP_439165.2| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae Rd KW20] gi|3183576|sp|P44092|PPID_HAEIN RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D Length = 622 Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|260581919|ref|ZP_05849715.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae NT127] gi|260095112|gb|EEW79004.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae NT127] Length = 622 Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 185/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|323700040|ref|ZP_08111952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp. ND132] gi|323459972|gb|EGB15837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio desulfuricans ND132] Length = 633 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 121/542 (22%), Positives = 222/542 (40%), Gaps = 68/542 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE++R+ + W+ KI ++ + F+ +G+S + SG TV +V Q + + + + Sbjct: 1 MLEVMRENASGWIVKILFAIIIIVFVFAFGMSG--LNSSGDPTVATVNGQAITRAEY-EA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 Q ++ + + RS + +L L+S L +G+ A V I Sbjct: 58 MYQRAAENLRRTNPDLPPAQTRSPEFKQMVLGELISQKLLLGEAAKLGIRASDKEVAAGI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR---TDVVGMFVGGMRPSN 176 F + F + + L + ++ ++Y + L+ D VG+ P++ Sbjct: 118 GAVDAFKDANGNFDQQRYQTALRDIRMTPGDFEENYRRDLTMEKVKDAVGV------PAD 171 Query: 177 LLLDQAKRFY---FENRSVDYI-VLNN--RHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 L QA++ + E ++DYI VL R+ I + + +++ +D ++ P Sbjct: 172 LSESQARQIFDWLGETAAIDYIEVLPTDFRNEIKIGETE---IEAYYQANQDRFQIPAQV 228 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVF-------PNQKE 282 + + F K +++DE++A Y NK+ P ++ LV +Q++ Sbjct: 229 TLRTLAFTPASLAKFQTVTDDEIKAYYAANKDSLEEPAQVHARHILVAVKESDSQADQEK 288 Query: 283 A----DEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAK 334 A D+ +Q K G F +LA++ S + LG F K IPD A F+L K Sbjct: 289 AKARIDKLYQEAKAGADFAELAKKNSDGPSAPNGGDLGWFGKGAMIPDFEKA--AFALNK 346 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G PV FG+ I V + K T +F E K +I ++ KAS++ + + + Sbjct: 347 GGVSEPV-RTQFGWHIIMVEDKKEGTTKTFDEAKDEIKARLAEEKASDQANDLLDQATDR 405 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 L G S+ +I+ ++ + V P Q L + FG + +K Sbjct: 406 LVSGMSLTDIA-----------------SELGLETVTTDPMPAQFLGQAFGMNADAAKAV 448 Query: 455 TVALP----------DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + P +G YM V+ E I L V + + K AE +A Sbjct: 449 SGLTPGQAYKSPVAVNGGYMLVEKVEDIAPSIMALNLVRQTIVNTLENQKGAELAGQEAE 508 Query: 505 QL 506 ++ Sbjct: 509 KI 510 >gi|21672727|ref|NP_660794.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008943|sp|Q8K987|PPID_BUCAP RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|21623371|gb|AAM68005.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 621 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 107/531 (20%), Positives = 247/531 (46%), Gaps = 44/531 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS----F 56 M++ ++ + K L ++ + L++G + F+ + + V +++ F + + Sbjct: 1 MIKYLKSRLNIIIVKCILGIIILS-LVFGTINNYFNRDTTRYIAKVNGEEISFITLQKMY 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 I+ K++ ++ Q + +++ + + IL L++ L+Q+ + + + Sbjct: 60 IDERKKQEKILGQDFEKIKKNKKFKEETYNY-ILSQLINNILLEQYTKRMNFNIQDNEIK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P+F ++N+F+ +++ L+ + + EY+ K L+ T + + ++ Sbjct: 119 KIIFNIPIFQ-ENNEFNKKKYLNYLSSKNLTHYEYVSLIRKKLNTT----YLINAISETD 173 Query: 177 LLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +LD ++ E R + ++ + + + +F+++K+ + PE +I Sbjct: 174 FILDNEQKKIIKLLSEKRIIKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKI 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SYI + + KI+ SN+E++ Y+KN +KY + E R + + EA LKK Sbjct: 234 SYI--QLKPNKFKIQCSNEEIKNWYKKNIDKYSNQERRQYSIIQTKTKNEALSILSELKK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGS 345 G+ F ++A+E KS+ S +G +K ++P+ + +A+ L K + +I + Sbjct: 292 GEDFSKIAKE--KSIDPFSSEQGGNIGWITKNFVPNEIKIAN----LEKIDQISNIIKFN 345 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 ++I ++ I P EV I N+++ K+ YK+L++ +A+ + I+ Sbjct: 346 NNFLIIKLNKILPKKYKKISEVSDLIENEIKYQKSL----NTYKKLKDKIAI-IAKKNIN 400 Query: 406 RREKIVSID--LPL-VDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHT--VAL 458 R + I+ LP ++ KD KE+ P ++++F+ + + L K H+ + L Sbjct: 401 RFDLILKKTNILPKETNWFDKDSVPKELQN-PILKKIIFKKGLLDRQKKL-KSHSGLIVL 458 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 D + IK R +KL+++ ++ K +K E+ +K +++ + Sbjct: 459 NDHQSFLLSIKNFQKKRIKKLKDIKRNIVNKLKYIKAVEKTKNKLKKILFQ 509 >gi|145640678|ref|ZP_01796261.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021] gi|145274604|gb|EDK14467.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 22.4-21] Length = 622 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFEDSKSL 400 >gi|257093852|ref|YP_003167493.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046376|gb|ACV35564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 635 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 109/530 (20%), Positives = 228/530 (43%), Gaps = 44/530 (8%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKI 71 V ++FL ++ +PF WG+ D+ SG+ T + SVG K+ F +W+ + + Q + Sbjct: 12 VVQVFLALITLPFAFWGV-DSYVRNSGAGTDLASVGDSKITRPQFDQAWRVQQDRMRQVL 70 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-----PLFH 126 G E + +L++LV DQ + I D V ++ R P Sbjct: 71 GANFRPESMNTPEAKLAVLNSLV-----DQRLLLIEAAKDRLAVGDDLLREVIGKIPALQ 125 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 ++ +FS + + LA +G+++ ++ + L+ +V S D R Sbjct: 126 -ENGQFSLARYRAVLAAQGMSQSQFEAQVRQDLTLQQLVAAIGDTGIASTTTADAMLRIQ 184 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 E R V + + A + ++++ + + E + +++ + +K Sbjct: 185 SEERQVAELRFSPDQFLERVQVDPAAVRKFYDDNANRFEIAEQAKAEFVVLSLDGLLEKA 244 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPN--------QKEADEAFQSLKKGK-KF 296 ++S+ E+ YE +K++Y PE R L+ N + +A+E + ++K +F Sbjct: 245 KVSDAEVTGWYESHKDRYQQPEERRASHILILANADVDREKARAKAEEVLKEIQKSPGRF 304 Query: 297 IQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA++ G + LG F + + + D++F A++ + + ++ FGY I Sbjct: 305 AELAKQHSQDPGSAEKGGDLGFFGRGMMVK-AFEDTVFK-AQENEVSGLVQSEFGYHIIK 362 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIV 411 V+ IK + +V+ +I +++ AS + E + + S+ + R K+ Sbjct: 363 VTGIKVGTQRALVDVRPEIEAELKRQAASRQFAEAAEAFSNLVYEQPDSLQPAADRFKVT 422 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQL-----LFRVFGKDDPLSKDHT--VALPDGSYM 464 + +G + V A+P QL L +F +D ++ +T V + + + Sbjct: 423 ------IQQSGWLPRNPPVEALPALGQLNSPKVLAALFSEDSLKNRRNTEAVEIAPNTLL 476 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 ++ E PA R + V T+++ KT + A ++ KA + L ++G Sbjct: 477 AARVIEHRPATVRPFDTVKTEIEASLKT-QEAAALARKAGEAQLGQLQQG 525 >gi|329123025|ref|ZP_08251596.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC 11116] gi|327471956|gb|EGF17396.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC 11116] Length = 622 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKFL 400 >gi|152995753|ref|YP_001340588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] gi|150836677|gb|ABR70653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] Length = 607 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 125/580 (21%), Positives = 242/580 (41%), Gaps = 51/580 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ V KI + + V F ++G+ + S + S TV V + + + Sbjct: 1 MLQDIRDKSQGIVVKIIVGFIVVTFALFGVDALVTSFNSSDTVAEVDGVDITRTQMLQGA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G VN L ++ LD LV L + +GL +V + Sbjct: 61 ETQRRQLISMMGGQVNPALLEDNLLQRRALDELVQRVVLANQAKGLGLGVSDAQVNAYLL 120 Query: 121 RSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGM-FVGGMRPSN 176 ++ F +G+ ++ + F+ L + KE I + R + G FV + Sbjct: 121 QAEQFQTNGQFDQNKYLNFIRSLGFTPLAFKERIKQDVLIQQPRNAIAGSEFVLPYQ--- 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D + + R+ DY+ + S+ L ++E K+N++ PE +++Y++ Sbjct: 178 --VDSVSKLQSQERTYDYVSFSLADESENTSVSDDELKAYYEANKENFKTPEQVKVNYVV 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-------S 289 + K++I++ ELQ Y+ + E L+ + + DEA + Sbjct: 236 ISSSDFYGKVKITDAELQDAYQASISVLAQEERSASHILIETSDRSDDEAKKRLEEVEAK 295 Query: 290 LKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G KF LA ++ G + +LG + ++ I + D++FS+ KKG+ V G Sbjct: 296 LKAGAKFADLAAKYSDDIGSNKDGGNLG-YVEKGIMGSAFDDTLFSM-KKGEVKSV-KGQ 352 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +GY + + +I SF K+++ ++R KA + + ++ + + +D I+ Sbjct: 353 YGYHLIKLDDISKPDVPSFASKKEELLQKLREDKARDALLTAHEDITDLAYASDKLDAIA 412 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-------PLSKDHTVAL 458 + +D+ + G+D E+ + P F V +D L D V L Sbjct: 413 KE---YGVDVLQSAYFGRDGGSDEITSSPAVIAAAFGVSVLEDGQNSNLIELGDDQVVVL 469 Query: 459 ------PDGSYMWVQIKE---SIPARDRKLEEVLTDVKK-------DWKTVKTAEEVSSK 502 P+ + + KE SI +++ +E + +K W +VK A+ + Sbjct: 470 HLNDHKPEAFQSYEETKEQVASIVVQNKAVESLRAKAEKAKSASNTKWTSVKDAKRGQDE 529 Query: 503 ANQLVLEYSK-EGKNFRDIGKNLGASLLTTNQINRMDNEN 541 L EGK ++ K L L ++N++D N Sbjct: 530 MTSLAFSLPHPEGKPVIEV-KGLSNGDLALIRLNKVDAGN 568 >gi|145637308|ref|ZP_01792969.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH] gi|145269560|gb|EDK09502.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH] Length = 622 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIINLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFEDSKSL 400 >gi|319775064|ref|YP_004137552.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae F3047] gi|317449655|emb|CBY85861.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae F3047] Length = 622 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 186/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG ++ +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKFL 400 >gi|167855404|ref|ZP_02478170.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755] gi|167853470|gb|EDS24718.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755] Length = 624 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/352 (21%), Positives = 154/352 (43%), Gaps = 39/352 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + S WV KI ++ + F++ G+ L + S V V +++ F + Sbjct: 1 MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLMATDNS--VAKVNGEEISQQVFSRAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 Q+ +++ ++G + N + + IL+ LV L Q+ + + ++ ++ Sbjct: 59 NQQQNILNAQLGERFWDLMDNPIYVKQ--FHESILNGLVDDELLRQYAKSLKIDVSADQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP F +D KF+++++ L G+ D Y ++ GM ++ + Sbjct: 117 KSEIVNSPAFQ-QDGKFNNNLYQQALRNNGLT----ADGYAAIVYE----GMLFAQIQEA 167 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVP----AIA------DPSNAVLTQWFEKYKDNYR 225 +++ + + + ++L R V +IA S + ++E K N+ Sbjct: 168 --IVNSSFTVPAQQELLAKLLLQKRQVRLATYSIAKEVNNQTASTEEMQAYYEANKANFV 225 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 PE + YI + + KI+++N+++ Y+ NK KY + + + + EA+E Sbjct: 226 NPEKLTVEYISIEPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANE 285 Query: 286 AFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADS 328 Q+L KG+ F QLA+ QG L G F K + ++ D+ Sbjct: 286 IVQALAKGEDFAQLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANMLDA 337 >gi|118581468|ref|YP_902718.1| hypothetical protein Ppro_3065 [Pelobacter propionicus DSM 2379] gi|118504178|gb|ABL00661.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379] Length = 527 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 12/245 (4%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84 FL+WG S + V R K+ F N++++ + Q G + E +++G Sbjct: 30 FLVWGKGSDGSGSS-MAYAAKVNRHKISLEEFQNAYQRMRNIYQQIYGQSLTPEIEKTLG 88 Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L K L++L+ A + + + +G+ A V G IA P+F KD FS D++ L Sbjct: 89 LKKAALNSLIDTALILKEAKKMGITASKDEVSGAIAAMPMFQ-KDGVFSFDLYQQLLKSN 147 Query: 145 GINEKEYIDHYTKML----SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 I KE+ + + L +R ++ + V +L + R E Y+ Sbjct: 148 RITAKEFEEAQQRELILKKTRQAIINKVAVSDQEALDLFRKENDRIELE-----YLSYGP 202 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 V P+ A L ++ +K +D +R E ISY+L D + + ++ DE+Q Y+K Sbjct: 203 ADVMGEIRPTEAELKEFLQKNQDRFRTAEKAEISYVLIDPASQAARQSLTEDEIQTFYQK 262 Query: 260 NKEKY 264 N +++ Sbjct: 263 NIDRW 267 >gi|308050304|ref|YP_003913870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica DSM 9799] gi|307632494|gb|ADN76796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica DSM 9799] Length = 624 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/396 (20%), Positives = 175/396 (44%), Gaps = 26/396 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFI 57 MLE IR+ S+ AKI L + + F + G+ +S G+++ V +++ Sbjct: 1 MLEKIREGSQGVAAKIILGAVILSFALTGV----YSYLGTNSEMLAAEVNGEEITRYDLD 56 Query: 58 NSWKQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +++ E + ++G + +S A GL + +LD L++ +DQ + D+GL + Sbjct: 57 QAFQNEQARMRAQLGEMFDSLSADPTYMAGLRQSVLDRLIAERLIDQKVADLGLRVSDDQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P F D KF + + + L + ++ + D + +SR +V +G Sbjct: 117 IQQAIVAMPEFQ-VDGKFDNARYQAVLRQNNLSGVQLRDMLRRDMSRQQLVVGLLGSEFV 175 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ + R + Y++++ A + S++ ++ +++ + + PE + Y Sbjct: 176 TDAEAQALTALQQQTRDLRYLLVSQADYNAGIEVSDSEISDFYQANQARFATPEEVSVEY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + V + + ++++E +A Y+ Y PE R ++F E D+A + Sbjct: 236 VELAVSDLAGDVSVTDEEAKAFYDSQANAYQQPERRLAAHMLF----EGDDAQARAEAAL 291 Query: 295 KFIQLAEEQGKSLSDISLGSFSKE-------YIP---DVSLADSIFSLAKKGDFTPVIHG 344 ++ E ++ S +F+ E P + + ++F+L ++G+ + VI Sbjct: 292 ARVRAGEAFAAVAAEASDDTFTAENGGELDWMTPGQMEPAFDAALFAL-QEGETSDVIKT 350 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +GY I + I+ + F EVK I ++ KA Sbjct: 351 EYGYQIVNAKKIEAATQRPFDEVKASIIATLQADKA 386 >gi|242277701|ref|YP_002989830.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio salexigens DSM 2638] gi|242120595|gb|ACS78291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio salexigens DSM 2638] Length = 633 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 110/542 (20%), Positives = 228/542 (42%), Gaps = 54/542 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++I+R+ +++W KI ++ F I+ F+ + + V Q VP F+ + Sbjct: 1 MMDILRQNAQSWGIKIAFGIIIAVF-IFAFGAGGFNGNTDPVIAYVNDQPVPTQEFMQVY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + ++S++ +S K +L+ LVS L+ E +GL + + I+ Sbjct: 60 RETAEALRAQ-NPNLDSDQLQSPEFKKAVLEQLVSQKLLEAEAEKLGLSVSNSELSYSIS 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY--TKMLSR-TDVVGMFVGGMRP-SN 176 + P F KD KF +++ + L ++ + + + ++S+ + V M V + Sbjct: 119 KIPAFADKDGKFDMNLYQAFLQSRAMSAATFENDMRNSALISKLQEYVTMPVKPTEADAR 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L D A E +DY ++ S+ + +++ D + P + YI Sbjct: 179 ALFDSAA----EKVQIDYYYVSGADFVKNIKISDKQIEDFYKANPDKFTIPARSVVKYIA 234 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKY------------FSPEIRTVEQLVFPNQKEAD 284 F E ++ +E++A YE NKE + + + ++ V +K+ Sbjct: 235 FTPEELSINETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKIK 294 Query: 285 EAFQSLKKGKKFIQLAEE--QGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + K G+ F +LA++ +G S S LG F + + ++ F+L KKG+ + Sbjct: 295 KVLAKAKSGQDFGKLAKKYSEGPSSSKGGELGWFGRGAMVK-PFEEAAFAL-KKGEISEP 352 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + FG+ + + +++ + +VK +I + + KA++ + + + LA G + Sbjct: 353 VRTRFGWHLIKIDDVREAGQKDIDQVKDEINSLIAQEKAADSITDKLDHAIDLLASGMKL 412 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-------PLSKDH 454 D++S I K E A + + L R FG + L K + Sbjct: 413 DKVSEELGIA-------------FKKSEQATV----ENLSRAFGMTESAAQTIIALPKGN 455 Query: 455 TVALP---DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 +P DG Y+ V+ + +P L++ D++ + +KA L+ + S Sbjct: 456 ATDMPVAIDGGYILVEKEADVPPSLSPLKDQKQDIESFLSQQQAMNLAKAKALALMGQLS 515 Query: 512 KE 513 E Sbjct: 516 NE 517 >gi|183601065|ref|ZP_02962558.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827] gi|188019406|gb|EDU57446.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827] Length = 618 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 96/434 (22%), Positives = 186/434 (42%), Gaps = 36/434 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M++ +R + + K+ L ++ + F++ G+ A + + GSS V Q + F + Sbjct: 1 MMDNLRTKANSPFIKVLLAIIILSFVLTGV--AGYMIGGSSNDAAKVNGQSISREQFQTA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + QE + +G N E + L ++L+NL++ + ++ ++ L A + Sbjct: 59 FSQERQSLQDSLGDKFSEIAGNEESMKF--LRNQVLNNLINSTLMAEYANELNLSASDQQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P+F + KF D + LA + D+ + + ++ Sbjct: 117 VKDAIFEMPVFQ-TNGKFDGDKYRQILAANNYS----ADNLAEQVRANLILSQLSDSFIK 171 Query: 175 SNLLLDQAKRFYFE----NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 ++ L + Y E R + L+ A + + ++ +D++ APE Sbjct: 172 TDFALPSEVKTYAELVLQEREIRVATLSLADEQAKQTATEDEIKAYYNANQDSFIAPEKV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++SY+ D + ++++E++ YE+N + Y E + + ++KEA+ L Sbjct: 232 QVSYVEIDAAALPPQ-SVTDEEVKTYYEQNLKNYTQAEQKHYSMIQVASEKEANAIIDEL 290 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIF--SLAKKGDFTPVIHGSFG 347 K G F+ LA E KS +S G+ ++ + S I +L +KG + I Sbjct: 291 KAGADFVALATE--KSTDKLSAGNKGIIGWMEEASTPSEIVNANLTEKGQISTPIKSDSN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKEDYKRLEEFLALGTS 400 +VI + +IKP VK +I N++ K S +KV E E LA S Sbjct: 349 FVIFRLDDIKPESIKPLDSVKDEIKNKLIQDKNSKQFYDLQQKVSEAATNDNESLA---S 405 Query: 401 MDEISRREKIVSID 414 ++E+S K+V+ D Sbjct: 406 VEEVSGL-KVVATD 418 >gi|91783524|ref|YP_558730.1| putative PpiC-type peptidyl-prolyl cis- trans isomerase [Burkholderia xenovorans LB400] gi|91687478|gb|ABE30678.1| Putative PpiC-type peptidyl-prolyl cis- trans isomerase [Burkholderia xenovorans LB400] Length = 645 Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 84/409 (20%), Positives = 169/409 (41%), Gaps = 25/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + L+++ VP L + G+ S+ V SV K+ + + ++ Sbjct: 1 MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 59 MRQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D D + LA +G+ +Y + ++ + G S Sbjct: 119 LNDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFP-----------NQKEAD 284 ++ + +L+ Y+ N Y ++R L+ +++A+ Sbjct: 239 MSPATLAASVQPGDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F Q+A++ + S LG F + I + D++F+L KK + Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKTQLASKAFTDD 406 >gi|239814796|ref|YP_002943706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] gi|239801373|gb|ACS18440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] Length = 636 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/422 (20%), Positives = 177/422 (41%), Gaps = 66/422 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGR---QKVPFSSF 56 M + RK ++ + IFL +L +P F+++G+ GS V V R Q + Sbjct: 1 MFDFFRKYNK--IVMIFLFLLIIPSFVLFGVE----RYQGSGGEVKVARVDGQNITRPE- 53 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILD-NLVSGATLDQFIEDIGLEADHG-- 113 W + + + +I R +S +D +L+ +++ ATL++ + D L A Sbjct: 54 ---WDAQHRLETDRI-------RQQSPNVDPTLLESDVMRYATLERMVRDRVLAAAAAKS 103 Query: 114 ----------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 R++ + F D KF + F R E+ ++ ++ Sbjct: 104 NVTISEERLSRIFAQDTGLAAFRTPDGKFDRESFQRVTGR--TPEQYEASMRAELATQQM 161 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 ++G+ P L FY + R + + + S+A + +++ + Sbjct: 162 LLGVTGTAFTPPALAAATINAFY-DRREIQVARFSPESFASKVTVSDADVEAYYKAHTAQ 220 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------- 275 ++APE I Y++ D+ +K I ++ +L+ YE+N ++ + E R + Sbjct: 221 FQAPEQASIEYLVLDLEAAKKNISVNEADLKTYYEQNTARFGTKEERRASHILITAPASA 280 Query: 276 --------------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 + K+A F + + + E+G L ++ G+ K + Sbjct: 281 PAADRAKAKAKAEQLLAEVKKAPATFADVARKNSQDPGSAEKGGDLDFVTRGAMVKPF-- 338 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D++F+L KKGD + V+ FGY I +++IKP+ F++V+ I N++R +A+ Sbjct: 339 ----EDALFAL-KKGDISDVVETEFGYHIIRLADIKPAVVPPFEQVRATIENEVRSQQAT 393 Query: 382 EK 383 ++ Sbjct: 394 QE 395 >gi|283953940|ref|ZP_06371469.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 414] gi|283794545|gb|EFC33285.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 414] Length = 496 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 169/373 (45%), Gaps = 40/373 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKISFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G++ L +LV L F +D+G++A+ + ++A + F Sbjct: 73 NGALTPENAEQLGIENIALSSLVEDKLLLNFAKDLGVDANENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG----MFVGGMRPSNLLLDQAKRFYF 187 F+ ++ L + K+Y L+ +VG +F + L + + F Sbjct: 133 FNKTIYYELLNVNNLTPKDY----ETQLANEVIVGKLDHIFNIPNKDEELKMLASSYFMR 188 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS-YILFDVHEKEKKI 246 + S+ I + +++ + L + + ++K++Y+ + IS Y L +EK Sbjct: 189 DALSIAKIDYDKKNIKINEED----LKKLWSEHKEDYKTKKMYEISTYFLPSSNEK---- 240 Query: 247 EISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEE 302 I + EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 241 -IDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKSVANAKFLDL--K 297 Query: 303 QGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGD-FTPVIHGSFGYVIAHVSNIKP 358 GK SF K++ DV + + AK GD PV++ + GY+I ++ + P Sbjct: 298 NGKD-------SFQKDHNISESDVYYPIDLLNKAKNGDVLRPVLYNN-GYIIVKLNKVDP 349 Query: 359 SFTVSFQEVKKDI 371 +F+E + ++ Sbjct: 350 IRNKTFEEARDEV 362 >gi|237746606|ref|ZP_04577086.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] gi|229377957|gb|EEO28048.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] Length = 647 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/406 (19%), Positives = 170/406 (41%), Gaps = 24/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR R + +I L+V +P I+ + V V + + + N+ Sbjct: 1 MLDFIRSHKR--LTQIILLVFIIPSFIFVGVEGYKRFGDGDAVAKVNGKAITQQEWDNAQ 58 Query: 61 KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ Q+ G +S+ S +L NL++ L + L V Sbjct: 59 REQAERFRQRAAVQGQPFDSKWIESSQFKWAVLQNLINRRVLLATLNKEHLTVPEQVVLQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I P G D K + + LA +G+N + T+ ++ + Sbjct: 119 KIREIPGLIGPDGKLNEARYKEVLAAQGLNPDMHFALMTQDMAMQQIAAPIEFSAFEPKA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + + R V +V + + LT ++ ++ + PE+ + ++ Sbjct: 179 VVTRVWNLFEQERDVQRLVFDAGAYRNKVSVTEDDLTAFYRAHEAQFTIPEHADVEVVVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286 D+ EK ++IS+ +LQ+ YE+N++++ PE R + ++ K A ++ Sbjct: 239 DMPTVEKNVKISDADLQSYYEQNRDRFSIPEERRAQHILIAVAKNASDSEKAEAKKKAEE 298 Query: 287 --FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 Q +F +LA ++ G + + LG F++ + D++F + KKG+ + Sbjct: 299 LLAQLKADPSRFAELAKAHSQDPGSARNGGDLGFFTRGKMVK-PFNDAVFGM-KKGEISD 356 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + FGY + V++IKP+ +VK + +++ + S+K E Sbjct: 357 PVQTDFGYHLIAVTDIKPAVAKPLSQVKDSVLQELKRQETSKKFAE 402 >gi|77918655|ref|YP_356470.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM 2380] gi|77544738|gb|ABA88300.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM 2380] Length = 649 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 145/685 (21%), Positives = 281/685 (41%), Gaps = 92/685 (13%) Query: 1 MLEIIRKASRTWVAKIF---LVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML++IRK R+ + KI ++ FV FL+WG ++ GS+ + V + + Sbjct: 1 MLDLIRKKQRSVLVKIVFWTIIAAFVGTIFLVWGKGNSGSGGDGSA-IAHVNGDAISYQD 59 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F +++ + ++ G + E + + L+ + + LV+ L Q ++ + D + Sbjct: 60 FQITYQNMRQEMEKRFGRSLPPEIEKQLQLNTQAYEQLVNRLLLLQEADNRDIAVDKDEL 119 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA P F KD +F + LA + + + + + + L ++G V ++ Sbjct: 120 RQAIADIPAFQ-KDGQFDRKRYQEVLAYQHLTSRAFERNMREQL----LLGKVVEAIKQD 174 Query: 176 NLLLDQAKRFYFENRS----VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + DQ + NR+ + ++ L + ++ L +F++ ++++R PE Sbjct: 175 AEVTDQDIDHEYRNRNEKIDLAFVKLAPGRYESKVTVTDEALQAYFQENREDFRQPEKIA 234 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PN 279 + ++ FD K I + + +Q Y+K+K++Y+ E ++F Sbjct: 235 LRFVRFDPDNVAKDISVDDAAIQDYYDKHKDQYWVEEQVKASHILFRITAGLDEDGRQKK 294 Query: 280 QKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAK 334 + A + + + GK F QLA ++ G ++ +LG F+ +PD + F+L K Sbjct: 295 RAAAQKVLEQARAGKDFAQLARTHSDDAGSAIKGGALGYFTHGSMVPD--FENVAFAL-K 351 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + ++ S GY I + T +V+ D+ +R E ++D Sbjct: 352 PGQISDLVETSMGYHIIKCEGRIEAQTKPLDDVRDDVRANLR----KELARQD------- 400 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV------FGKDD 448 AL +M S + ID A G +V +E LF G DD Sbjct: 401 -ALDKAMMAYSAHRQDGDID------AAASANGLQV-----RETGLFSRGEAIDGLGSDD 448 Query: 449 PLS------KDHTVALP---DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 LS K+ +A P D + +KE + +L+E +V++ ++ ++ + Sbjct: 449 ELSMAAFALKEGELARPIVRDQGVLTFVVKERHASYIPELKEARAEVERAYRRQESV-GL 507 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SGPVE 558 + +A + VL K GK D+ + + T R + F G S+ + Sbjct: 508 ARQAAEAVLAELKAGKKLADVARKEKVEMGETGLFPR--SYGNFIPRIGSSEALATAGFA 565 Query: 559 MVKCFPIENGLSYVV------------FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 + K P+ + + YV+ + +K+ + S LT K LL + Sbjct: 566 LTKEAPVADEV-YVIDGRFVVATLMHRMEADPAKLTDAAREQLRTSVLTNKREK-LLTEL 623 Query: 607 IAYLKSQYSVTVHDNLIQRYLDGEK 631 + LKS+ + V L Q L+GEK Sbjct: 624 VEKLKSEAKIKVEPTL-QNILEGEK 647 >gi|307729660|ref|YP_003906884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] gi|307584195|gb|ADN57593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] Length = 646 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/409 (20%), Positives = 171/409 (41%), Gaps = 25/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + L+++ VP L + G+ S+ V SV K+ + N+ Sbjct: 1 MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDNA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 59 MRQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D + + LA +G+ +Y + ++ ++ G S Sbjct: 119 LNDPVISSLKKPDGSIDVERYKQLLAMQGMTPDQYDERVRYSIATQELPASIQGSAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKIQPTDAQLQAYYDAHRNDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284 ++ S +L+ Y++N Y + ++R L+ +++A+ Sbjct: 239 MSPATLAASVQPSEADLKKYYDENIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F Q+A++ + S LG F + I + D++F+L KK + Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEV 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ FGY I +++KP+ T F EVK+ IA ++ AS+ +D Sbjct: 358 SGIVQTDFGYHIIKATDVKPAVTRPFDEVKEQIARDLKTQLASKAFSDD 406 >gi|30250138|ref|NP_842208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] gi|30139245|emb|CAD86118.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] Length = 630 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/391 (16%), Positives = 169/391 (43%), Gaps = 21/391 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V +I L++ +PF+ WG+ ++ S + V +++ + + + + + +G Sbjct: 11 VVQIVLLIAVLPFMFWGV-ESYRSAGDAGYAAVVDGEEISRQEYEQAIRNQQENLRNMLG 69 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++ + + +L+NL+ L + E +GL R+ EI FH +D KF Sbjct: 70 EKFDASLLDNPQMRLAVLENLIQERLLRREAERVGLTVLDSRLTAEIQNISFFH-EDEKF 128 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S+ + L R+G++ + L R ++ G + + + + Sbjct: 129 SYQRYRDLLQRQGMSPAMFEARVAGELMRQQLLEGITGSVIVPRTVAGKVASLSATMYEI 188 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + ++ A+P A + +++ + ++ PE ++ Y++ + E ++ +IS++E Sbjct: 189 NRMTISPEQYIDQAEPDEAAIQSYYDSHYQDFTLPERVKVEYVVLSLDELARQEQISDEE 248 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----------------- 295 ++ Y+++++++ E R ++ +A E ++ K + Sbjct: 249 IRKYYDEHQDEFGQAEERRASHILLSVPADATEEQKTSTKARAEQILEQVRQDPEKLPEL 308 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +L+E+ G + LG F++ + D +F + ++G+ + FG+ I ++ Sbjct: 309 AAELSEDPGSAKEGGDLGFFARGLMVK-PFEDEVFQM-QRGEIRGPVETPFGFHIIRLTE 366 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +K + +VK+ I ++ K +++ E Sbjct: 367 VKGADVAGLDDVKEQIRQLLQHQKVADRFGE 397 >gi|297538717|ref|YP_003674486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp. 301] gi|297258064|gb|ADI29909.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp. 301] Length = 633 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 96/422 (22%), Positives = 177/422 (41%), Gaps = 67/422 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ WV K L ++ +PF ++G+ L S + V VG + ++ N+ Sbjct: 1 MLDQIRTVAQGWVGKALLALITIPFALFGIDSYLSSAGNNVAVAKVGGNSISVQAYDNAL 60 Query: 61 KQELGMISQKIGFVVNSERAR--SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 K + + F E+A+ S + +LD L++ L I + ++ Sbjct: 61 KNMRNRLQSEGKF----EQAQLDSPEVKSLVLDQLINKQLLSDEIHNAKYAISDSQLATY 116 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + P F KD KFS +++ L++ ++ + F GMR ++LL Sbjct: 117 VTGMPEFQ-KDGKFSQELYDQTLSQNQLSPSK-----------------FEAGMR-ADLL 157 Query: 179 LDQAK----RFYF-ENRSVDYI--VLNNRHVPAIAD-------------PSNAVLTQWFE 218 QA+ R F N D + + N + V +++ P + ++E Sbjct: 158 AQQAQDGIARLGFISNARADEVLKLANQQRVVTVSEIKTKDFVDQVTVKPEE--VKAYYE 215 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 ++K+ PE +I ++ + + +S+DE++ Y+ N K+ E R ++ Sbjct: 216 QHKNKLIVPEQVKIEFLSLAPVNFMRNVNVSDDEVKKYYDDNAAKFQGNEQRRASHILIA 275 Query: 278 ------PNQKE-----ADEAFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIP 321 P QK+ A+E +KK KF QLA ++ G ++ LGSFS+ + Sbjct: 276 FGVSATPEQKQQAKAKAEEILAQIKKDPSKFEQLAVKNSQDPGSAVKGGDLGSFSRGAMV 335 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D+ FS+ K + ++ FGY I V+ I F +K I + KA Sbjct: 336 K-PFEDAAFSM-KVNQVSDLVESEFGYHIIKVTEISGQ-NADFNSLKPQIKGDLMFQKAK 392 Query: 382 EK 383 ++ Sbjct: 393 DE 394 >gi|145634178|ref|ZP_01789889.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittAA] gi|145268622|gb|EDK08615.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittAA] Length = 622 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G F+ S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|145638176|ref|ZP_01793786.1| lipoprotein signal peptidase [Haemophilus influenzae PittII] gi|145272505|gb|EDK12412.1| lipoprotein signal peptidase [Haemophilus influenzae PittII] gi|309751332|gb|ADO81316.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R2866] Length = 622 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G F+ S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKMAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|296135612|ref|YP_003642854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] gi|295795734|gb|ADG30524.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] Length = 640 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 167/413 (40%), Gaps = 34/413 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58 MLE IRK S+ +I L VL P F+++G+ S GS+ + VG Q + Sbjct: 1 MLESIRKHSKLM--QIVLFVLIFPSFVLFGI-QGYSSFEGSADAAAKVGGQTISMQQLDA 57 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + E+ + +G V+ ++ + + LD ++ L LE +V Sbjct: 58 ANRDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQA 117 Query: 119 IARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P D F + S +A +G+N ++ + L V+ G + S Sbjct: 118 ILQIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDS 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDN---YRAPEYKR 231 L A + + R V + PA V Q E YK+N ++ PE Sbjct: 178 QALATAAAKAAAQQREVRLALFK----PADYTAQVQVTPQEIETFYKNNTARFQKPESAD 233 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y++ E I+++ ++ +A Y+ N K+ +P R ++ +A A Q Sbjct: 234 IQYVVLSAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPADATAAQQEQA 293 Query: 292 KGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 K + +F LA ++ G + LG F+ + + AD++F + K Sbjct: 294 KARAEAIAKQVKANPAEFAALARKDSQDPGSAEKGGDLGYFTADSMVK-PFADAVFGMQK 352 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 G+ I FGY I ++ IKP F VK I Q++ A +++ D Sbjct: 353 IGEIVGPIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSAD 405 >gi|187923900|ref|YP_001895542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phytofirmans PsJN] gi|187715094|gb|ACD16318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phytofirmans PsJN] Length = 645 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/409 (20%), Positives = 169/409 (41%), Gaps = 25/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + L+++ VP L + G+ S+ V SV K+ + + ++ Sbjct: 1 MLDFFRNHKRLMM--FMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 59 MRQQLDRARQMLGAQFDMKSFDTPERRAQMLDGLIEQRVLADETQRLHLTASDDAVRRVL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D D + LA +G+ +Y + ++ + G S Sbjct: 119 MSDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + R A P++A L +++ +++ + P I Y++ Sbjct: 179 TLAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQYVV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284 + S+ +L+ Y+ N Y + ++R L+ +++A+ Sbjct: 239 MSPATLAASAQPSDADLKKYYDDNIAHYRTDGQVRASHILIAAPKDASAADKAKAKQKAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F Q+A++ + S LG F + I + D++F+L KK + Sbjct: 299 ELLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEV 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D Sbjct: 358 SGIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKAQLASKAFTDD 406 >gi|241763692|ref|ZP_04761741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] gi|241367081|gb|EER61455.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] Length = 641 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 90/419 (21%), Positives = 177/419 (42%), Gaps = 51/419 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ V + L +L +P F++ G+ + FS SS V V + + + N+ Sbjct: 1 MFESIRKHSK--VVMLLLFLLIIPSFVLVGIDRSYFS-QKSSVVARVDGHDISQTDWDNA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFIEDIGLEADH------ 112 K E I RA+S +D K+LD+ + ATL++ + D +A Sbjct: 58 HKVETDRI-----------RAQSPTVDAKLLDSPQARYATLERLVRDRVFQAASQKMHLV 106 Query: 113 ------GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R EI D + + + + +G++ + + + + +S V+G Sbjct: 107 TSDSRLARSLQEIPAIAALKRPDGSLDAEAYRALVGAQGMSPEGFEANVRRDISVNQVLG 166 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 +G ++ + A ++ R V N PS+A L +++ + +++ Sbjct: 167 GVMGTAFGTDAQVKLALDALYQRREVQVARFNPADFAGKVTPSDADLEAYYKAHTADFQQ 226 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E + Y++ D+ I ++ D+L+ Y++N + E R ++ K+A A Sbjct: 227 AEQATVEYVVLDLDSVRAGITLNEDDLRTYYKENLTRLAGKEERRASHILINASKDAPAA 286 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-------------------D 327 + K + QL E+ K+ + + +K+ D A D Sbjct: 287 DREKAKARA-TQLLEQVRKAPA--TFAEVAKKSSDDTGSAPAGGDLNFFGRGAMVKPFED 343 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + F++ KKGD + V+ FGY I +++IK +F+E++ + +++ +A K E Sbjct: 344 AAFAM-KKGDISDVVETDFGYHIIMLTDIKTPRQPNFEELRPSMEAELKQQQAQRKFAE 401 >gi|229846060|ref|ZP_04466172.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1] gi|229811064|gb|EEP46781.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1] Length = 622 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G F+ S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNRLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDVEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|148826351|ref|YP_001291104.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE] gi|148716511|gb|ABQ98721.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE] Length = 622 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 91/415 (21%), Positives = 185/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G F+ S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNRLTS----DGYASILRASLPLEQIQNGIANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A A++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDVEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVAYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|254468807|ref|ZP_05082213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium KB13] gi|207087617|gb|EDZ64900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium KB13] Length = 627 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 90/404 (22%), Positives = 175/404 (43%), Gaps = 34/404 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR AK+ L ++ VPF ++G+ L S+ + TV SV ++ F S Sbjct: 1 MLETIRNGLEKKWAKVVLAIIVVPFALFGIDSYLNSMGSNVTVASVNNFEITAQDFQRSM 60 Query: 61 KQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 M+ Q+ +R+ +S K ++D+LV + ++ ++ Sbjct: 61 -----MVLQERLDAEGQDRSILQSPEFRKSVIDSLVDSQLIKSAVDKYNFRISDDQLSTY 115 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F ++ KFS D + + G+ K+ ++ + G Sbjct: 116 IVGMPDFQ-ENGKFSQDRYDQIVQYNGLTPKKLEQQIRGDMATQQIQGTLANLTYFPKKN 174 Query: 179 LDQAKRFYFENRSV---DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +++ + ++ R V D ++L+ + D + +++E D++ P+ +I ++ Sbjct: 175 IEEIAKIAYQKRHVKLYDMLLLDYEDKIKVTDDE---IKEFYEANTDSFIRPDQVKIEFV 231 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADE--------A 286 ++ V + ++++E++ YE NK+ Y E R+ ++F + ++DE A Sbjct: 232 VYSVANIVPNVSVTDEEVKEFYEFNKQNYEGDEERSASHILFMADASQSDEEVEKVRQKA 291 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDI--------SLGSFSKEYIPDVSLADSIFSLAKKGDF 338 LK KK EE K LS SLG F + + +S F+L KG+ Sbjct: 292 SNVLKDIKKDPNKFEEYAKDLSQDPESAKNGGSLGFFKRGVMVK-EFEESAFTL-NKGEI 349 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + ++ FG+ I + ++K VSF++VK + ++ KA E Sbjct: 350 SDLVRTDFGFHIIRLDDVKGD-QVSFKDVKAQVKGELLYGKALE 392 >gi|121594957|ref|YP_986853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] gi|120607037|gb|ABM42777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] Length = 640 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 92/421 (21%), Positives = 179/421 (42%), Gaps = 55/421 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + L +L +P F++ G+ FS GS V V + + + + N+ Sbjct: 1 MFESIRKHSK--IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFI---------EDIGLE 109 + E I RA+S G+D K+LD+ + ATL++ + +D+ + Sbjct: 58 HRMESDRI-----------RAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHML 106 Query: 110 ADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R+ E+ P D + + + +G+ + + LS V+G Sbjct: 107 TSDARLARELQSIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMG 166 Query: 167 MFVG----GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 +G G + L LD F+ R + N + ++A L ++ + Sbjct: 167 GVMGSAFSGPAEARLALDA----LFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPA 222 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ E + Y++ D+ + I +S D+L+ Y++N + E R ++ K+ Sbjct: 223 KFQQAEQASVEYVVLDLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKD 282 Query: 283 ADEAFQSLKKGK-------------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSL 325 A ++ K K F ++A+++ G + S LG F + + Sbjct: 283 APADARTQAKAKAEELLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVK-PF 341 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++FS+ KKG+ + V+ FG+ I +S+IK SF+E++ + +++ +A K Sbjct: 342 EDAVFSM-KKGEISDVVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFA 400 Query: 386 E 386 E Sbjct: 401 E 401 >gi|261365094|ref|ZP_05977977.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC 25996] gi|288566520|gb|EFC88080.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC 25996] Length = 511 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 30/294 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+ A SGS +V VG +K+ + N+ Sbjct: 12 AQILLGLIALTFIGFGVETA--RNSGSDYIVKVGSEKISDHTLNNA-------------- 55 Query: 74 VVNSERARSVGLDKK-ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V +E+A G ++ I LV A L + + +G++ +V I P FH + KF Sbjct: 56 -VQAEQAAGGGQSREAIFSGLVQRAYLKEGAKMMGIDVSMDQVKQAIVDDPAFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S +F L++ ++E ++ID + + +++ + G S+ +Q + NR++ Sbjct: 115 SQALFTQYLSQRHMSEDQFIDDLREQFALQNLINLVQNGAIISDSQAEQLIKLTQSNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 A +A L +++E +K +Y P+ ++ Y+ + +K IS DE Sbjct: 175 RSFTFRPETFAAQVKTDDATLQRYYESHKKDYLIPQAVKLEYVALNAAHLAEKQSISADE 234 Query: 253 LQAEYEKNKEKYFSPEIRTVEQ----LVFPNQKEADEAFQSLKKGKKFIQLAEE 302 ++ K F E+ + Q L F +K EA LKK A+E Sbjct: 235 VK--------KAFDEEVAALPQNAPKLEFDKEKARIEAALKLKKASADFNAAKE 280 >gi|222110395|ref|YP_002552659.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus TPSY] gi|221729839|gb|ACM32659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus TPSY] Length = 640 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 92/421 (21%), Positives = 179/421 (42%), Gaps = 55/421 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + L +L +P F++ G+ FS GS V V + + + + N+ Sbjct: 1 MFESIRKHSK--IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG-ATLDQFI---------EDIGLE 109 + E I RA+S G+D K+LD+ + ATL++ + +D+ + Sbjct: 58 HRMESDRI-----------RAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHML 106 Query: 110 ADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R+ E+ P D + + + +G+ + + LS V+G Sbjct: 107 TSDARLARELQSIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMG 166 Query: 167 MFVG----GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 +G G + L LD F+ R + N + ++A L ++ + Sbjct: 167 GVMGSAFSGPAEARLALDA----LFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPA 222 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ E + Y++ D+ + I +S D+L+ Y++N + E R ++ K+ Sbjct: 223 KFQQAEQASVEYVVLDLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKD 282 Query: 283 ADEAFQSLKKGK-------------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSL 325 A ++ K K F ++A+++ G + S LG F + + Sbjct: 283 APADARTQAKAKAEELLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVK-PF 341 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++FS+ KKG+ + V+ FG+ I +S+IK SF+E++ + +++ +A K Sbjct: 342 EDAVFSM-KKGEISDVVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFA 400 Query: 386 E 386 E Sbjct: 401 E 401 >gi|198283164|ref|YP_002219485.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247685|gb|ACH83278.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 522 Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 16/245 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 M+E R R+WVAK +V++ + F++WG+S LFS S SS V +V QK+ ++F Sbjct: 1 MMETFRNFGRSWVAKSLMVLIALSFVLWGVSGYLFSGHSTSSVVATVDGQKISDAAFQKR 60 Query: 60 WKQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K L S G ++ A RS GL+ +L+ L+ L +GL+ + Sbjct: 61 MKDALARYSHIFGATTAAKMAADRSFGLE--VLNGLIDNMLLGMEAGRLGLQVPDAALAK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY--TKMLSRTDVVGMFVGGMRPS 175 +I P F K FS +++ LA G+ ++ D + L + VV + Sbjct: 119 KIESIPAFQEK-GAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQVVPQVIATASKV 177 Query: 176 NLLLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +A R + E R V + + + A A P+ + ++ + D +R P ++ Sbjct: 178 -----EATRIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVADYYHAHMDQFRLPAQVQV 232 Query: 233 SYILF 237 Y++ Sbjct: 233 QYVVL 237 >gi|118602656|ref|YP_903871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567595|gb|ABL02400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 615 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 109/511 (21%), Positives = 229/511 (44%), Gaps = 47/511 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR ++ WVA + + ++ +PF+++G+S+ VS + + SV + + F+ + Sbjct: 1 MLGSIRNKTKGWVAYLIVGLITIPFVLFGISEYFTGVS-NIVIASVDGVDISKAEFLAKF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++ ++E L + IL+ ++ L+Q ++ E + I Sbjct: 60 NPQKRRLQQELDKKYDTEF--DAMLKQSILNQMIDKYLLEQLSNELSYETTANELNTIIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNL- 177 + LF K +FS + + L G +Y + L+ T + + + P+ L Sbjct: 118 ANNLFKKK-GRFSLEKYKQLLRLNGYTTIKYEAIKLQELTETQIKYNLLDSAFVIPTELA 176 Query: 178 ----LLDQAKRF-YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L DQ ++F Y + DY+ V ++ + ++ K + APE +I Sbjct: 177 KLQKLNDQQRQFSYIAIHADDYVKEVKVDVQSVKN--------FYNNKKALFFAPEQVKI 228 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 ++ +++ K I++S+DEL Y+ +E++ E R + ++ ++ A + L Sbjct: 229 EFVELSLNKISKNIKVSDDELFNFYKDEQERFTREEERQAQHILLEDKSTAQKVIALLNN 288 Query: 293 GKKFIQLAEEQGKSLSDIS----LGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G KF +LAE+ + + + LG F++ +P+ +F++ K + + ++ FG Sbjct: 289 GGKFAKLAEQYSQDTASKANAGDLGFFTRGVMLPE--FEKKVFAM-KLNEVSDLVKSEFG 345 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEIS 405 Y I ++NIK F VK ++ + T+A K Y E+ LA +++EI Sbjct: 346 YHIIKLNNIKVKTLKPFDAVKSELLDLYTQTQAQ---KVFYSLTEQLTHLAYEVNLEEIV 402 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK---DHTVALPDGS 462 + +++ L + DF D K ++ ++++ F D L+K + L Sbjct: 403 DQ---MNLKLQVSDFF--DRKNTQL-----NQKIVVTAFS-DTVLNKGENSEILELSKNK 451 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 M ++++E + R + EV ++ T+ Sbjct: 452 LMVIRVREKLAQRQKSFIEVKDEINAHLMTL 482 >gi|39997188|ref|NP_953139.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA] gi|39984078|gb|AAR35466.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA] gi|298506201|gb|ADI84924.1| conserved hypothetical protein [Geobacter sulfurreducens KN400] Length = 527 Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 17/276 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ V K+ V+ + F L+WG + ++ SS V V R K+ + Sbjct: 1 MLGIMRKYKQSPVIKVVFGVIVLSFIGTIFLVWGKGEG--KLTPSSYAVKVDRTKISYEE 58 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + Q G + + + + + K+ LD LV GA + D+G++ V Sbjct: 59 FQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGIKVSKDDV 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA P F + FS + +V L I KE+ + L ++ ++ Sbjct: 119 QQAIAAMPSFQ-VNGAFSFNQYVQVLKANRIAPKEFEEGQKDEL----MIKKAQDQIKSR 173 Query: 176 NLLLDQAKRFYFENR----SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + D R F R ++ Y+ + V A ++ LT + K +++++ PE Sbjct: 174 ATVSDDEARELFRKRNDRLAISYVSYSPDDVKAEIKLTDQELTDFLAKNQNDFKTPEKIS 233 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 I+Y++ D K +E+S ++QA Y+KN ++Y P Sbjct: 234 ITYVMVDPL-KVGGLEVSEADIQAWYQKNIDRYQGP 268 >gi|260219734|emb|CBA26579.1| hypothetical protein Csp_E36670 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 587 Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 83/418 (19%), Positives = 174/418 (41%), Gaps = 48/418 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +RK ++ + +FL+++ F++ G+ G +TV +VG K+ + + Sbjct: 1 MFDFVRKHTKVLMFLMFLLIIPA-FVLVGVDGYKSMAGGGATVATVGNAKITQEEWDFAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDN----------LVSGATLDQFIEDIGLEA 110 K E V+ RA LD K+LD+ LV + + ++ + Sbjct: 60 KNE-----------VDRLRASVPNLDPKLLDSAEARYTTLERLVREKVMAEAVQTAHMTT 108 Query: 111 DHGRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 + R+ E+ ++P D + + A +G+ + + + LS V Sbjct: 109 SNARLARELQQNPTIASLRKPDGTLDMERYRQLAASQGLTPEGFEARVRRDLSLMQVESA 168 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 G L D A +FE R V + + + +PS+A + +F+ +++ Sbjct: 169 VTGTAFSPKALSDLALNAFFERREVQVLRFSPADYASKINPSDADIDAYFQANSALFQST 228 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + Y++ D+ +K + ++ +L++ +E+N + + E R ++ K+ A Sbjct: 229 ETANVEYVVLDLEAVKKTVSVNEADLKSYFEQNASRLSAKEERRASHILINAPKDMPAAD 288 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-------------------DS 328 ++ K + LA Q + D S +K+ DV A D+ Sbjct: 289 RAKAKERATALLA--QVRKAPD-SFAEVAKKNSQDVGSAPRGGDLDFFGRGAMVKPFEDA 345 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FS+ KKG+ + ++ FG+ I ++++K + +F+E + + ++R A K E Sbjct: 346 AFSM-KKGEISDLVESDFGFHIIKLADVKGAKQPTFEEARVSLEPELRAQSAQRKFAE 402 >gi|104781017|ref|YP_607515.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48] gi|95110004|emb|CAK14709.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48] Length = 619 Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 88/406 (21%), Positives = 178/406 (43%), Gaps = 20/406 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKMLREAALKGLIDRKLLLQGAEDAKFAFSEAALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS + F S + + G ++ +ML++ ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFSAERFDSVIRQMGYGRMQF----REMLAQEMLIGQLRTGLAGSSFVTD 175 Query: 181 -QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + F E ++ D+ L + PA S+ + ++++ + P+ I YI Sbjct: 176 KQVEAFARLEKQTRDFAALTFKADPAAVKVSDEEVKAHYDQHAKEFMTPDQVVIDYIELK 235 Query: 239 VHEKEKKIEISNDELQAEYEK-----NKEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLK 291 ++++++DEL+A YEK ++++ + + V Q +A +E Q L+ Sbjct: 236 KSAFFDQVKVNDDELKALYEKEIANLGEQRHAAHILIEVNDKTTDAQAKARIEEIQQRLE 295 Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+ F +LA ++ G + + LG F+ + D + D+++ L K PV FG Sbjct: 296 KGEDFAKLAKAFSQDPGSANAGGDLG-FAGPGVYDPTFEDALYKLNKDQVSAPV-RTQFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 Y + + ++ SF +K + +++ + ++ E K+LE+ Sbjct: 354 YHLVKLLGVQAPDVPSFASLKDKLTRELKTQQVEQRFVEATKQLED 399 >gi|253999166|ref|YP_003051229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. SIP3-4] gi|253985845|gb|ACT50702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. SIP3-4] Length = 632 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 83/379 (21%), Positives = 167/379 (44%), Gaps = 34/379 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S++W+AK+ L + +PF I G+ L S ++ V + + + NS Sbjct: 1 MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60 Query: 61 KQ---ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQF-IEDIGLEADHGRV 115 ++ +L + V+ + LD+ I++ L++ A T F I D L +DH Sbjct: 61 QRLRNQLQAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAAL-SDH--- 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRP 174 I P F ++ KFS + + L + ++ T +L + G+ P Sbjct: 117 ---IITLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLP 172 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + Q + R V + A + +++++KD ++ PE ++ + Sbjct: 173 EPIS-KQTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEF 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKE 282 +LF + K+++S++E++ Y++N K+ E R ++ +K+ Sbjct: 232 VLFSSNNLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATTEAKQQAKKQ 291 Query: 283 ADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 A+E +++ +F LA ++ G + LGSF + + D++FS+ K G+ Sbjct: 292 AEEVLAQVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVK-PFEDAVFSM-KPGE 349 Query: 338 FTPVIHGSFGYVIAHVSNI 356 + ++ FGY I ++ I Sbjct: 350 ISNLVESEFGYHIIKLTEI 368 >gi|294339748|emb|CAZ88110.1| putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) PpiD [Thiomonas sp. 3As] Length = 640 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 167/413 (40%), Gaps = 34/413 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFIN 58 MLE IRK S+ +I L VL P F+++G+ S GS+ + VG Q + Sbjct: 1 MLESIRKHSKLM--QIVLFVLIFPSFVLFGI-QGYSSFEGSADAAAKVGGQTISMQQLDA 57 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + E+ + +G V+ ++ + + LD ++ L LE +V Sbjct: 58 ANRDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQA 117 Query: 119 IARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P D F + S +A +G+N ++ + L V+ G + S Sbjct: 118 ILQIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDS 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDN---YRAPEYKR 231 L A + + R V + PA V Q E YK+N ++ PE Sbjct: 178 QALATAAAKAAAQQRVVRLALFK----PADYTAQVQVTPQEVETFYKNNTARFQKPESAD 233 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y++ E I+++ ++ +A Y+ N K+ +P R ++ +A A Q Sbjct: 234 IQYVVLSAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPTDATAAQQEQA 293 Query: 292 KGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 K + +F LA ++ G + LG F+ + + AD++F + K Sbjct: 294 KARAEAIAKQVKANPAEFPALARKDSQDPGSAEKGGDLGYFTADAMVK-PFADAVFGMQK 352 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 G+ I FGY I ++ IKP F VK I Q++ A +++ D Sbjct: 353 IGEIAGPIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSAD 405 >gi|313201268|ref|YP_004039926.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. MP688] gi|312440584|gb|ADQ84690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. MP688] Length = 632 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 83/379 (21%), Positives = 167/379 (44%), Gaps = 34/379 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S++W+AK+ L + +PF I G+ L S ++ V + + + NS Sbjct: 1 MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60 Query: 61 KQ---ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQF-IEDIGLEADHGRV 115 ++ +L + V+ + LD+ I++ L++ A T F I D L +DH Sbjct: 61 QRLRNQLQAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAAL-SDH--- 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRP 174 I P F ++ KFS + + L + ++ T +L + G+ P Sbjct: 117 ---IITLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLP 172 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + Q + R V + A + +++++KD ++ PE ++ + Sbjct: 173 EPIS-KQTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEF 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKE 282 +LF + K+++S++E++ Y++N K+ E R ++ +K+ Sbjct: 232 VLFSSNNLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATAEAKQQAKKQ 291 Query: 283 ADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 A+E +++ +F LA ++ G + LGSF + + D++FS+ K G+ Sbjct: 292 AEEVLAQVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVK-PFEDAVFSM-KPGE 349 Query: 338 FTPVIHGSFGYVIAHVSNI 356 + ++ FGY I ++ I Sbjct: 350 ISNLVESEFGYHIIKLTEI 368 >gi|291279447|ref|YP_003496282.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans SSM1] gi|290754149|dbj|BAI80526.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans SSM1] Length = 626 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 90/407 (22%), Positives = 169/407 (41%), Gaps = 69/407 (16%) Query: 1 MLEIIRKASRTWVAKIFLVV---LFVPFLIWGLSDALFSVSGSSTVVSVGRQK---VPFS 54 ML + R + ++LV+ + FL+WG V G+ GRQK + + Sbjct: 1 MLRMFRNQKKILAFFLWLVIAAFIGTIFLVWG-------VGGNR-----GRQKNYAIKVN 48 Query: 55 SF---INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111 F N ++QE S + ++ E ++ ++K++ D+++ L +G+ Sbjct: 49 DFEISFNEYQQEYDKFSNTLKSLLGGEIPNTININKQVTDSIIEKYLLLDQANKLGVFVS 108 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 V+ EI P F + +F +V L G+ + R+ + V Sbjct: 109 DVEVFNEIKNIPSFQT-NGQFDAKRYVEILRLNGLTPASF--------ERSIKADLLV-- 157 Query: 172 MRPSNLLLDQA--------KRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + NL+ + + N++ + YI LN+ ++ L +FEK K Sbjct: 158 QKTKNLITQSVSVNENEIKNEYIYRNKTAKISYIKLNSEKFKKDVTYNDEELKAYFEKNK 217 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277 ++YR PE ++ YI D + K+I++S++E++ Y ++ +++ E + ++ Sbjct: 218 EDYRVPEKIKLKYIKIDPKDFNKEIKVSDEEIEKYYLQHTDEFIEKEKVAAKHILIRVKD 277 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAE--------EQGKSLSDISLGSFSKEYIP 321 +K+ + Q +KKG KF LA+ + G L + G KE+ Sbjct: 278 WNNKKEVAEAKKKIENILQKIKKGAKFEDLAKKYSDDPTAKNGGDLGYFTKGQMIKEF-- 335 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 D +F L K GD + ++ FGY I V KP ++ E K Sbjct: 336 ----EDVVFKL-KPGDISDIVKTKFGYHIIKVYGHKPEKKLTLDEAK 377 >gi|261493077|ref|ZP_05989616.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311256|gb|EEY12420.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 623 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 83/397 (20%), Positives = 168/397 (42%), Gaps = 40/397 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L +S ++V V +++ F N+ Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGL--ISQDNSVAKVNGEEISQQLFNNTL 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +E ++ ++G + + E A ++ +L+ L+ L Q+ +++ L ++ Sbjct: 59 NREQNRLNAELGSRFWDLMDSPEYA--AQFNQSVLNGLIDEELLRQYAKELKLGISADQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS++++ L ++ D Y ++ + G+ S Sbjct: 117 KSEIVNSQMFQ-QDGKFSNELYQQTLRHNNLS----ADGYAAIVQEGMLQSQLQEGIINS 171 Query: 176 NLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + + + E R ++ V +++ L ++E K APE Sbjct: 172 DFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTVSEQE---LRAYYEANKTKLLAPE 228 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + Y+ + E K+EI+N+++Q Y++NK Y + + + ++ EA Q Sbjct: 229 KLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQ 288 Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 +LK G+ F LA+ + G L G+F K + D++ +L G + Sbjct: 289 ALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAF------EDAVANLT-AGQMS 341 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + Y I V KP + +VK IA +R Sbjct: 342 AAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIR 378 >gi|89095457|ref|ZP_01168368.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum sp. MED92] gi|89080287|gb|EAR59548.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum sp. MED92] Length = 627 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 120/575 (20%), Positives = 225/575 (39%), Gaps = 75/575 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ +AKI + ++ V F ++G+ + GS+ +V ++V + Sbjct: 1 MLQSIRDNSQGIIAKIIVGLIAVTFALFGVESLVSLTGGSNAPATVNGEEVSQQELVQGM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + ++G + + +L+ L+ L Q E+ GL + I Sbjct: 61 RLQRNQMLSQMGENADPGLLNDNLISSMVLEGLIEQKVLVQSAENQGLVFTDAMIDQLIV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLL 179 + F D KF F + L G++ Y K L+ + + + SN L Sbjct: 121 STKDFQ-VDGKFDKVQFETVLRNAGLSPLSYRALVRKEKLTEQERIAYLLSAFTLSNEL- 178 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ ++R Y L A S+ + +F + Y + E I YI+ D Sbjct: 179 NEIATLQNQSRDTRYFTLAAEPERAAQTVSDDEVADYFAQNSGQYLSDEQVAIEYIVLDR 238 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV---------EQLVFPNQKEADEAFQSL 290 + EK +E++ DE+ A Y++ + Y + E+R EQ + +A L Sbjct: 239 ADLEKDVEVTADEVSAAYQQMVDSYQAQELRQAAHIMVEISDEQEAAAAETKAKALLDRL 298 Query: 291 KKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 G+ F +A+ E G L G+FS E+ D++++L +KG + Sbjct: 299 NAGEDFAAVAQSDSDDPASAEMGGDLGVNEKGTFSAEF------EDALYAL-EKGQISEP 351 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + FGY + + ++ S +F+E K I + KA LE L T Sbjct: 352 VQTEFGYHLIKLLDVVESEVPTFEEAKAGIERDLLNEKA---------ELEFVAQLDTLK 402 Query: 402 DEISRREKIVSIDLPLVDFAGKD-VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV---- 456 D V F+ D V+ E + + LF G + P++ + V Sbjct: 403 D---------------VAFSSGDLVEPAETLGLEIQTSELFSRAGNEAPITSEPKVLSVT 447 Query: 457 ---------------ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 L + ++I + R+R L+EV + K AE +++ Sbjct: 448 FDPSFLQEGVNSDPIELSSSKVVVLRILDHQLPRERSLDEVKEVITATLLEEKVAEALTT 507 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 KA+Q + + K+G+ + G+ +++ I+R Sbjct: 508 KADQFIAKL-KQGEALESLAS--GSEVISKTDISR 539 >gi|57167705|ref|ZP_00366845.1| conserved hypothetical secreted protein, putative [Campylobacter coli RM2228] gi|57020827|gb|EAL57491.1| conserved hypothetical secreted protein, putative [Campylobacter coli RM2228] Length = 495 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 117/495 (23%), Positives = 205/495 (41%), Gaps = 47/495 (9%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V FL WG D F+++ SS+V VG +K+ ++ F + Q +Q Sbjct: 17 WISTIAFVG--AGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFNVRYNQIFNYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 +N E A+ +G++ L +LV L F +D+GL + V +A + F Sbjct: 73 NGGLNEESAKQLGIENAALSSLVENKLLLNFAKDLGLGSSENEVIQALAETKAFQDPSGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFEN 189 F+ ++ L I KE Y K LS ++G + + ++ L YF Sbjct: 133 FNKTIYYELLNANNITPKE----YEKTLSNEIIIGKLEQIFNLPQTDEELKMLGASYFMQ 188 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS--YILFDVHEKEKKIE 247 S++ L + L + + ++K++Y+ + IS Y+ D+ KI+ Sbjct: 189 DSLNIAKLEQDKENIKVNEEE--LKKLWNEHKEDYKTKKVYEISTYYLPVDMQ----KID 242 Query: 248 ISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQ 303 S E E NK KY FS +I + E D A LK KF++L E + Sbjct: 243 DSKLEEFYNNENNKFKYKDFSGKIMSFE--AAKKDVAKDYALAQLKNTANAKFLELKEGK 300 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 K D ++ S Y P +L S AK GD GY+I ++ P T + Sbjct: 301 DKFQKDENITD-SDVYYPLEAL-----SRAKNGDVLRPSEYQNGYIIIKLNKTNPVRTKT 354 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 F E ++++ +A + ++E K+ LE F GT++ +SR D Sbjct: 355 FDEAREELMPIYISEQAKKNLEEKAKQNLENF--SGTNIGFVSR------------DTVR 400 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 D K + L VF D ++ + + D + ++ K+ + K ++ Sbjct: 401 NDAKISNILNEAEFSYFLMNVFNSDQ--NRSYVILNEDKAILYKINKQKLDMNPEKFQQY 458 Query: 483 LTDVKKDWKTVKTAE 497 T + ++ +++K E Sbjct: 459 RTMLNQNLQSLKANE 473 >gi|148548673|ref|YP_001268775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida F1] gi|148512731|gb|ABQ79591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida F1] Length = 623 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 85/406 (20%), Positives = 177/406 (43%), Gaps = 20/406 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ +ML ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQF----REMLGEEMLIGQLRTGLAGSSFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + E ++ D+ L + PA S+ + ++++ + +P+ I YI Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 +++++++EL+A+YEK ++++ + + V V Q + A+E Q L Sbjct: 236 KSAFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+ F LA+E G + S LG F+ + D + ++++ L + G + + FG Sbjct: 296 KGEDFAALAKEFSQDPGSATSGGDLG-FAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 Y + + ++ SF +K + +++ ++ + K+L++ Sbjct: 354 YHLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQD 399 >gi|303257878|ref|ZP_07343887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] gi|302859221|gb|EFL82303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] Length = 645 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 35/396 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + R R W+ I ++++ F+ G++ ++ + V + + F Sbjct: 5 MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 63 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + Q+ G V+ + + IL N+ + L + + I Sbjct: 64 REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 123 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPS 175 + F KD +FS +++ + LA G ++++++ D ML + FV + + Sbjct: 124 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVP--KKT 180 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 LL+ R E R V + + S + ++++++KD+YRAPE I ++ Sbjct: 181 VALLNDILR---ETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFV 237 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEA-------- 286 + + E S EL+ YE+N++KY E R L+ P+ EAD+A Sbjct: 238 VMSPETVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKA 297 Query: 287 -----FQSLKKG-KKFIQLAEEQ----GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKK 335 +K KF QLA+E G + S L F++ + +P+ A +F AKK Sbjct: 298 KAEKILAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPEFDKA--VFG-AKK 354 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 + + FGY I HV++I P+ F+EV+ +I Sbjct: 355 DEIVGPVKTEFGYHIIHVTDINPAHVRPFEEVRSEI 390 >gi|331000463|ref|ZP_08324138.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] gi|329571795|gb|EGG53475.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] Length = 641 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 92/396 (23%), Positives = 171/396 (43%), Gaps = 35/396 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + R R W+ I ++++ F+ G++ ++ + V + + F Sbjct: 1 MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + Q+ G V+ + + IL N+ + L + + I Sbjct: 60 REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPS 175 + F KD +FS +++ + LA G ++++++ D ML + FV + + Sbjct: 120 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVP--KKT 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 LL+ R E R V + + S + ++++++KD+YRAPE I ++ Sbjct: 177 VALLNDILR---ETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFV 233 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEA-FQSLKKG 293 + + E S EL+ YE+N++KY E R L+ P+ EAD+A K Sbjct: 234 VMSPETVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKA 293 Query: 294 K-------------KFIQLAEEQ----GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKK 335 K KF QLA+E G + S L F++ + +P+ A +F AKK Sbjct: 294 KAEKILAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPEFDKA--VFG-AKK 350 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 + + FGY I HV++I P+ F+EV+ +I Sbjct: 351 DEIVGPVKTEFGYHIIHVTDINPAHVRPFEEVRSEI 386 >gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus EPS] gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus EPS] Length = 638 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 45/340 (13%) Query: 79 RARSVGLDKKILD-NLVSGATLDQFIEDIGL------------EADHGRVWGEIARSPLF 125 R +S +D +LD + + ATL++ + D L E R++ + F Sbjct: 66 RQQSPNVDPTVLDSDALRYATLERMVRDRVLAAAAAKANMTVSEDRLSRIFAQDPGLASF 125 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 D KF + F+ R E+ M ++ ++G+ + P L+ F Sbjct: 126 RTPDGKFDRETFLRVTGR--TPEQYEAQVRADMSTQQVLLGVSGTALTPPALVAATVNAF 183 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 Y + R + + S+A + +++ + ++APE I Y++ D+ +K Sbjct: 184 Y-DRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVLDLDAAKKN 242 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---- 301 + ++ +L+ YE+N ++ + E R ++ A + K K LAE Sbjct: 243 VVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAADREKAKAKAEQLLAEVKKA 302 Query: 302 ------------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 E+G L ++ G+ K + D++F+L KKG+ + V+ Sbjct: 303 PNTFADVARKNSQDPGSAEKGGDLDFVTKGAMVKPF------EDAMFAL-KKGEISGVVE 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 FGY I H+ +IKP+ F++V+ I +++R +A+++ Sbjct: 356 TEFGYHIIHLVDIKPAVVPPFEQVRATIESEVRAAQAAQE 395 >gi|89073234|ref|ZP_01159764.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp. SKA34] gi|89050944|gb|EAR56408.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp. SKA34] Length = 630 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 87/409 (21%), Positives = 179/409 (43%), Gaps = 21/409 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M+E +R+ + + KI L ++ F+ G+ L G+ V + V +++ +F + Sbjct: 1 MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL--AGGNEQVAAKVNDKEISQRAFEQA 58 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ + + Q++G + + A +L+ +V+ ++Q ++GL +V Sbjct: 59 YQNQRNQMQQRLGDYFSKLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVK 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F D F+++ + L R G + +++ + K + R + G N Sbjct: 119 QAIVAMPAFQ-VDGVFNNEQYNLTLRRAGFSPEQFAESIRKDMLRQQFLSALEGSDFALN 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L++ ++ + R V + LN ++ +++K K + P ++SYI Sbjct: 178 NELNELRKLESQERVVRTLKLNLADFTDKVTVTDKEAKAYYDKNKTQFTRPAQVKVSYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLK 291 I+I++ E +A Y ++K KY + E V ++ ++ +A+ LK Sbjct: 238 LSDKNLVNNIKITDKETEAYYNEHKSKYSTAEKIQVSHILVKGDSDTSKAKAEALLAELK 297 Query: 292 KGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +A++ G F K + D + ++ FSLAK GD + ++ SFG Sbjct: 298 GGANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEEAAFSLAKPGDMSGLVKSSFG 356 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 Y I + I+ F +VK I +++ ++V E + +L+ LA Sbjct: 357 YHIILLDGIEEPKVKPFADVKASIVAELQ----EQQVAEQFYKLQSKLA 401 >gi|192360723|ref|YP_001982468.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus Ueda107] gi|190686888|gb|ACE84566.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus Ueda107] Length = 621 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 115/555 (20%), Positives = 229/555 (41%), Gaps = 40/555 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 ML+ IR S+ ++ I + L V F ++G+ ++LF+ + ++ VV V +K+ N+ Sbjct: 1 MLQSIRDNSKGVISYILIGFLVVIFALFGV-ESLFNWNPTANKVVEVNGEKITQVELQNA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ + + G V SE L K +LDNL+ L Q + G+ + + +I Sbjct: 60 IARQKQQMMNRYGDQVPSEFLSEDYLRKPVLDNLIQNQVLYQAAKKAGMTVGNDLITEQI 119 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL- 178 + +P+F + F + + L+ G YT+ L++ V+ G+ S+ Sbjct: 120 SSAPVFKNEAGVFDNTRYRQALSMMGYTHA----TYTQQLAKDLVLNQLYTGLASSSFTT 175 Query: 179 ---LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 ++Q ++ R Y VL + + S+ + ++ K Y + E + YI Sbjct: 176 PNEIEQLIALSYQTRDFSYFVLPSSKIKESVVVSDEEIADYYAKNPQAYTSEEQVAVDYI 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ--KEADEAFQSLKKG 293 V I IS ++L +YE+ + + R ++ NQ ++ + L G Sbjct: 236 ELSVDALMADISISEEQLHKQYEQGLASFVAAPERHAAHILVENQDAEKIKAVREKLAAG 295 Query: 294 KKFIQLA---------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + F +LA +EQG L +F E+ ++ + K G+ + + Sbjct: 296 EDFAELAKTYSDDLGSKEQGGDLGFTKGDTFPAEF-------ETALAGLKVGEVSAPVET 348 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 G + + S SF+E K + ++ +A ++L+E S+ E+ Sbjct: 349 DAGTHFIKLLAERGSQAPSFEEQKASLEEHLKRAEAENIFVAKLEQLKELAFNADSLAEV 408 Query: 405 SRR--EKIVSIDLPLVDFAGKDVKG-KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 ++ K+ + L +G+ + K VA + E +L + +P+ D T A+ Sbjct: 409 AKEIDAKVSNTGL-FSRTSGQGIAANKLVADAAFSEDVL-QDGNSSEPIELDTTRAV--- 463 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 ++ + P+R L+EV + K E + +K +QL+ + GK ++ Sbjct: 464 ---VIKKTDYQPSRLLPLDEVKQQIVGVLTESKARELMRTKGSQLLADLHA-GKALDELA 519 Query: 522 KNLGASLLTTNQINR 536 G +L T R Sbjct: 520 SAEGQALKTAAAAKR 534 >gi|83745917|ref|ZP_00942974.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551] gi|207743054|ref|YP_002259446.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum IPO1609] gi|83727607|gb|EAP74728.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551] gi|206594451|emb|CAQ61378.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum IPO1609] Length = 648 Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 76/407 (18%), Positives = 168/407 (41%), Gaps = 24/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++L + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285 + K+I ++ ++L+ Y++N ++ + E R ++ P+ +K A+E Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339 ++K F +LA E+ G + LG +K +P A +F+L + GD + Sbjct: 300 VLAEVRKTPGNFAELAKKYSEDPGSAAQGGELGFLAKGATVPQFESA--LFALKQPGDIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V+ FG+ + + +K S + VK ++ ++R A++K E Sbjct: 358 DVVQSDFGFHVIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTE 404 >gi|313499610|gb|ADR60976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida BIRD-1] Length = 623 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/406 (20%), Positives = 177/406 (43%), Gaps = 20/406 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ +ML ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQF----REMLGEEMLIGQLRTGLAGSSFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + E ++ D+ L + PA S+ + ++++ + +P+ I YI Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDEEIKAHYDQHAKEFMSPDQVVIDYIELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 +++++++EL+A+YEK ++++ + + V V Q + A+E Q L Sbjct: 236 KSAFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+ F LA+E G + S LG F+ + D + ++++ L + G + + FG Sbjct: 296 KGEDFAALAKEFSQDPGSANSGGDLG-FAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 Y + + ++ SF +K + +++ ++ + K+L++ Sbjct: 354 YHLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQD 399 >gi|148264907|ref|YP_001231613.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4] gi|146398407|gb|ABQ27040.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4] Length = 525 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/273 (22%), Positives = 125/273 (45%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKI-FLVVLF----VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI F V++F FL+WG D V K+ F Sbjct: 1 MLGIMRKYKQSVLIKIVFCVIVFSFIGTIFLVWGRGD---KTDSGDFAAKVNGTKISFDE 57 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + ++ + G+ Q G + E + +G+ K L++L+ A + + + +G++ + + Sbjct: 58 YQKNYYRMKGIYEQIYGRSMTPEMEKQLGIKKTALESLIDNALILKEAKRLGIDVNRDEI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F KD F+ D + L I + ++ + + +V ++ Sbjct: 118 SAEIAKMPAFQ-KDGVFNFDQYTQMLKANRITPQ----NFEESMEEDMLVKKTREKIKER 172 Query: 176 NLLLDQ--AKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + DQ + F +N +D +I + V ++ L + + +++ ++ PE Sbjct: 173 ATVSDQDLLQAFKKQNDKIDLSFIAFSPAEVKGEVKVTDQDLNSYLQGHQEEFKTPEQLS 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 I+Y + D + K+ +S++E Q Y+KN ++Y Sbjct: 233 IAYAVLDPAQFAAKLTVSDEEAQTYYQKNIDRY 265 >gi|145630100|ref|ZP_01785882.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021] gi|144984381|gb|EDJ91804.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021] Length = 622 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 90/415 (21%), Positives = 184/415 (44%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +Q+ G F+ S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A ++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVVYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 400 >gi|71278179|ref|YP_270447.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea 34H] gi|71143919|gb|AAZ24392.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea 34H] Length = 638 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/409 (18%), Positives = 185/409 (45%), Gaps = 38/409 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ AKI L ++ + F + G+ ++ S ++V +V + + +F ++ Sbjct: 1 MLEDIREKSQGLTAKIILGLIILTFAVAGVGS--YTNSVDTSVATVNGEPISQQAFNKAY 58 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + G ++Q+ G + ++++ + +LDNL++ +DQ E + + R+ Sbjct: 59 QAQRGRMAQQFGEMFDTLSNDANYMANFRQGVLDNLINEKLIDQNSEALAIRVSDLRLKE 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + P F D F ++ +++ + + G ++ D+ ++R + + N Sbjct: 119 TIRKMPEFQ-VDGTFDNNRYLAIINQAGFFQSSDFRDYLRVEMTRRQLSQALIA--TEFN 175 Query: 177 LLLDQAKRFYFEN--RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L + + +N R + + ++ A + ++ + ++ + ++ E ++ Y Sbjct: 176 LPYQEKLQLALQNQTRDIRFATISAEQFKATVELTDEEVNSYYLANQARFQNKEQVKVDY 235 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEA------ 286 I +V K I ++++E+ Y++N + R + ++ F + DEA Sbjct: 236 ISLNVANIAKGINVTDEEVAKYYQENSASFTESAQRRISHILIEFNDGNADDEAAKIQAQ 295 Query: 287 --FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV----------SLADSIFSLAK 334 L++G+ F LA+E +S +FS E D+ + ++ +L Sbjct: 296 AVLARLEQGEDFAVLAKE-------VSNDTFSGENGGDLEWLEPGVMEETFDEAALALVN 348 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 GD + ++ SFGY + +++ K + +V+ ++ +++ +A EK Sbjct: 349 VGDTSQLVKTSFGYHVLKLTDYKEEVVKALIDVQTELRSKLSNDQAQEK 397 >gi|254428426|ref|ZP_05042133.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881] gi|196194595|gb|EDX89554.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881] Length = 632 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 130/655 (19%), Positives = 257/655 (39%), Gaps = 81/655 (12%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + K+ L + +PF+I G S V V K+ S +++Q++ Sbjct: 1 MGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRS-----------VVNQRVE 49 Query: 73 FVVNSERARSVGLDKKILDNLV------SGATLDQFI----EDIGLEADHGRVWGEIARS 122 V N R +S ++ +LD+ V G +Q I E + +V +I + Sbjct: 50 RVRNMLREQSPNMNPALLDSFVRPEMVLDGIVNEQLILAAAEQSSMVFSEQQVAADIYKV 109 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLL-- 179 PLF +D KFS F L G+N + YI R D++ F G ++ L Sbjct: 110 PLFQ-EDGKFSEQRFERELRARGMNPQSYIQGL-----RQDMIKEQFRAGFMQTDFSLPS 163 Query: 180 --DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ +R ++R + Y L+ + S+ + ++++ + + PE ++SY+ Sbjct: 164 ELNEQRRLGEQSRDIRYAQLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVEL 223 Query: 238 DVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVFPNQKEAD--------- 284 + ++ +++++++AEY+ K E R V ++ + D Sbjct: 224 SADKYADQVSVTDEDVKAEYDVRKSIMEEAGAGDAPRQVSHILIEVNDDRDLEQAKVRAR 283 Query: 285 EAFQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 EA +++ G+ F Q +++ G + S LG SK +P+ + D+I LA P Sbjct: 284 EAAKAIAGGESFADAAAQYSDDSGSAQSGGDLGVVSKGALPE-EMEDAIADLASGTVSAP 342 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V+ + ++I S E+ I ++ +A + +D +LEE L Sbjct: 343 VVTDAGVHLIKVTQEETARALPSLAELSDQIRADLKKARAEALLNDDVAKLEELLYEHAD 402 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT---VA 457 + + + + VD A D ++P +Q L D + H + Sbjct: 403 LQSPAEQVGTSVVTTDWVDLAAADAP----LSLPQVQQAL----NSDQVREQGHNSDLIE 454 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EG 514 + Y+ V+I E+ EEV +++ K E K QL + K +G Sbjct: 455 VDPTRYIAVRIAENKSPEPMPFEEVSFAIRERLK----GEHAMDKVQQLNEDAQKSIDDG 510 Query: 515 KNFRDIGKNLGASLLTTNQINR------MDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568 + + G + + R M+ N FG + + PV + + + +G Sbjct: 511 ADLAAVADLFGVEVEEQEGLQRGGAEPSMEVVNGAFGAPRFEEGEASPVALTR---LGDG 567 Query: 569 --LSYVVFKVTNSKVGPVQEKDKFISY--LTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++Y V +V + P+ + + + L + + V+A L+ + V +H Sbjct: 568 SVVAYQVTRVADGNAEPLSDAQQQAALVELANVEGQRNFRQVVALLRDEGDVELH 622 >gi|167032914|ref|YP_001668145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida GB-1] gi|166859402|gb|ABY97809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida GB-1] Length = 623 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/412 (21%), Positives = 179/412 (43%), Gaps = 32/412 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G + + +ML+ ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQ----FREMLAEEMLIGQLRTGLAGSSFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI--- 235 Q + E ++ D+ L + PA S + ++++ + +P+ I YI Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSEEEVKAHYDQHAKEFMSPDQVVIDYIELK 235 Query: 236 ---LFDVHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADE 285 FD +++++++EL+A+YEK ++++ + + V V Q + A+E Sbjct: 236 KSVFFD------QVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTEAQAKARAEE 289 Query: 286 AFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 Q L KG+ F LA+E G + + LG F+ + D + D+++ L + G + Sbjct: 290 IEQRLAKGEDFAALAKEFSQDPGSANNGGDLG-FAGPGVYDPAFEDALYKL-QDGQVSTP 347 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + FGY + + ++ SF +K + ++I ++ + K+L++ Sbjct: 348 VRTEFGYHLIKLLGVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQD 399 >gi|332141514|ref|YP_004427252.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551536|gb|AEA98254.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 565 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/428 (20%), Positives = 183/428 (42%), Gaps = 21/428 (4%) Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146 K +LD L++ + Q ++GL ++ I + P F +F ++ F + L + G Sbjct: 24 KNVLDRLIAEKLIQQQATNMGLRVSDEQIRETIVQMPEFQFG-GQFDNERFQAILRQNGF 82 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 ++ D+ +++ + + ++QA + R+ Y+++++ Sbjct: 83 QVADFRDYLRTQMTQNQLAAALTNSSFALDGEVEQANALQRQTRNAKYVLVSSDEFADSI 142 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + ++A + ++ ++ E +++Y+ V + + ++ + D ++ Y+ N Y + Sbjct: 143 EVTDADIEAFYNNNIASFDTEEQVKLAYVKLSVEDLKGRVSVDEDSVRTYYDNNLGSYGT 202 Query: 267 PEIRTVEQLVFPNQKEADEA---FQSLK----KGKKFIQLAEEQGKSLSDISLGS---FS 316 E R V ++ + D A +SLK G F LAE G F Sbjct: 203 EEQRRVSHILIEAGDDTDAAKAKAESLKAEIDSGADFAALAEANSDDTFSAENGGDLDFI 262 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + D + ++ FSL GD + V+ FGY I ++ +K + SF EV +I + + Sbjct: 263 TPEMMDPAFDEAAFSLENVGDVSDVVETEFGYHIIKLTEVKEAQVKSFDEVAGEIRDTLL 322 Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVD--FAGKDVKGKEVAAI 433 A EK E L E + ++D+ + ++DLP+ + ++ E+++ Sbjct: 323 YDAAMEKYFELQNTLAEIAFEVPDTLDDAAN-----AVDLPIQESVLFSRNTAPAELSS- 376 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P + F ++ L+ D + L D + + ++ E P R + L+EV ++ K Sbjct: 377 PGLLDVAFSSELVEEGLNSD-IIELDDETVVVARVVEHQPQRTQSLDEVREGIEASVKAE 435 Query: 494 KTAEEVSS 501 K+ E S Sbjct: 436 KSKEAAES 443 >gi|71066028|ref|YP_264755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter arcticus 273-4] gi|71039013|gb|AAZ19321.1| possible PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter arcticus 273-4] Length = 624 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/437 (19%), Positives = 183/437 (41%), Gaps = 51/437 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58 ++ +R ++W +I L++ P + G+ + + VG + S + +N Sbjct: 1 MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + EL + V ++ L +++L L+ L+Q +G+ + Sbjct: 61 NRRTEL------LDQVDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRL 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS----RTDVVGMFVGGMRP 174 + + +F G+D +FS+D F S L + + + + + LS +VG M+ Sbjct: 115 LRQEEIFKGEDGEFSNDQFASFLRQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKA 174 Query: 175 SNLLLDQAKRFYFENRSV--------DYIV---LNNRHVPAIADPSNAVLTQWFEKYKDN 223 + L+D E+R++ DY+ LN + A +++ KD Sbjct: 175 VSQLID----LQLESRNIWLHRFNWQDYVSQVKLNKSDIQA-----------YYDANKDT 219 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---Q 280 ++ ++Y+ + E++ ++LQ +YE K+ + R + Q++ + Sbjct: 220 LKSAAMVDLAYLQLSPQTIQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAK 278 Query: 281 KEADEAFQSLKKGKKFIQLAEEQ-----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAK 334 AD+ L KG+ F +LA+ + G++ DI G F+ + D + + Sbjct: 279 ARADKVKARLAKGEVFTKLAKTESDDPSGEAGGDI--GRFNPSVFGNDAAAVEKALEGLS 336 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + + SFGY I V+ S S + ++ D+ + + K E + + + Sbjct: 337 VGDVSVPVKTSFGYQIFTVTEDSGSKIPSLESMRDDLTAKAKEYKRQEVYADKVTAINDL 396 Query: 395 LALGTSMDEISRREKIV 411 A G S+++I+++E + Sbjct: 397 AADGFSIEDIAQQENVA 413 >gi|254360504|ref|ZP_04976653.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213] gi|153091044|gb|EDN73049.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213] Length = 623 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/397 (20%), Positives = 167/397 (42%), Gaps = 40/397 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L +S ++V V +++ F N+ Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGL--ISQDNSVAKVNGEEISQQLFNNTL 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +E ++ ++G + + E A ++ +L+ L+ L Q+ +++ L ++ Sbjct: 59 NREQNRLNAELGSRFWDLMDSPEYA--AQFNQSVLNGLIDEELLRQYAKELKLGISADQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS++++ L ++ D Y ++ + G+ S Sbjct: 117 KSEIVNSQMFQ-QDGKFSNELYQQTLRHNNLS----ADGYAAIVQEGMLQSQLQEGIINS 171 Query: 176 NLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + + + E R ++ V ++ L ++E K APE Sbjct: 172 DFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQE---LRAYYEANKTKLLAPE 228 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + Y+ + E K+EI+N+++Q Y++NK Y + + + ++ EA Q Sbjct: 229 KLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQ 288 Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 +LK G+ F LA+ + G L G+F K + D++ +L G + Sbjct: 289 ALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAF------EDAVANLT-AGQMS 341 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + Y I V KP + +VK IA +R Sbjct: 342 AAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIR 378 >gi|145632388|ref|ZP_01788123.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655] gi|144987295|gb|EDJ93825.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655] Length = 622 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/415 (21%), Positives = 181/415 (43%), Gaps = 40/415 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + S + AK L ++ + FL+ G+S LFS S + V + + F+N + Sbjct: 2 LIEKMHNLSNSKAAKFILGLITLSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE +Q+ G F+ S+ V L + I++ ++ L Q+++++ L + Sbjct: 61 NQEFEARAQREGEAFMAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F K KF + V+ L + + D Y +L + + G+ S Sbjct: 121 AIVTDPNFQVK-GKFDNSVYQRILQQNHLTS----DGYASILRASLPLEQIQNGVANSEF 175 Query: 178 LL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +F+ R L+ A S+ + ++E + ++ PE ++ Sbjct: 176 IVPAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQ 235 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI K +++++ E+ Y+ NK ++ + + ++ F N+++A ++ L+KG Sbjct: 236 YIDLSADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQ---FANEQDAKVVYEELQKG 292 Query: 294 KKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A + KSL IS LG + +P + D+ +L + G ++ I+ Sbjct: 293 ANFADVA--KTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGN 348 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 Y H+ ++ S + VK I + +R + +AS+K ED K L Sbjct: 349 Y---HIVLVQERKAQSLENVKAQIVDLVRKSLIESRYFSLEKQASDKAFEDSKSL 400 >gi|325577782|ref|ZP_08148057.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae ATCC 33392] gi|325160527|gb|EGC72653.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae ATCC 33392] Length = 625 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 95/439 (21%), Positives = 187/439 (42%), Gaps = 35/439 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + +++ K ++ V FLI G+S L+S S S V + + F+N + Sbjct: 2 LIEKMHGIAHSFIGKAIFALIPVSFLIGGMSGYLYS-SNDSFAAKVNGETISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE +Q+ G F+ ++ V L + ++ LV + Q+ +++ L + Sbjct: 61 NQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDEMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P + KF + + L++ G+ D Y +L + G+ S Sbjct: 121 AIVSDPNLQS-NGKFDNVRYQQLLSQNGLTS----DTYAAILRNALTLEQMQNGLADSEF 175 Query: 178 LL-----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 ++ D A+ F F+ R L A ++ + +++ + PE ++ Sbjct: 176 VVPAQVKDNAQVF-FQKRIARLATLPLADEIAKQKVTDEEIKAYYDANAKSLVQPEQAKV 234 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 YI +E K ++ ++ Y++NK ++ S ++ ++ +KEAD +Q LKK Sbjct: 235 QYIHVSANELGKLQPVTETQIAQYYQENKAQFISQKLAHIQ---LSTEKEADSVYQELKK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGS 345 G F +LA + KSL +S LG +P + D+ L TPV + G+ Sbjct: 292 GADFAELA--KTKSLDKLSGAQGGELGWVKDNELPK-NFEDAALLLNVGQYSTPVNVDGA 348 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + H+ ++ + +EVK+ IA+ +R A + + K + E A S D ++ Sbjct: 349 Y-----HIILVQDRKERTLEEVKEQIADTVRKNLAESRFQAVEKAVREKAA--ESSDSLA 401 Query: 406 RREKIVSIDLPLVDFAGKD 424 + + D+ GK+ Sbjct: 402 AVADAAGVKVEETDYFGKN 420 >gi|220905632|ref|YP_002480944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869931|gb|ACL50266.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 639 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 93/428 (21%), Positives = 173/428 (40%), Gaps = 43/428 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINS 59 MLE IR S++ K+ ++ + F+ WG+ + F+ S T+V+V + F + Sbjct: 1 MLEYIRDKSQSLGVKLAFGLIILVFVFWGVGN--FNDRSSGTLVAVVNGDPISMREFELA 58 Query: 60 WKQ-ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ E ++ G E+ + L ++IL +L++ L Q G+ + Sbjct: 59 YRNAEENLLRSNPGL--TREQLKQQQLGRQILRDLITQVLLSQEAARTGVSITPLELRMA 116 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + F + +F +V+ LA + + ++ ++ L R + M + Sbjct: 117 VGNIKGFQNEKGQFDPEVYTRVLAAQRMAPAQFEQDMSRDLLRQKIFAMVT-----APAW 171 Query: 179 LDQA---KRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 +D A KRF F E R VDYI + A PS+ + ++E +K + P ++ Sbjct: 172 VDPAESQKRFEFLREKRDVDYIFIPASDFAASVKPSDEEVQAYYESHKAQFAIPARADVA 231 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------- 286 Y+L + K IS+ + Y N ++ E ++ P ++A EA Sbjct: 232 YVLVSPQDLVKASGISSAAAEKWYADNAARFEQQEEVKAAHILVPLAEDASEADVKKAQE 291 Query: 287 -----FQSLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 LK GK F +A+ G L + G+ K + D+ F+LA Sbjct: 292 QAAAIEAELKAGKSFAAVADAHNGPNAAGPGGELGWLKRGTTVKPF------EDAAFALA 345 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G + + FG I V K F++V+ ++ M + ++K+ + L E Sbjct: 346 -PGKVSAPVRSQFGLHIIKVEEKKDGGLPPFKQVEAEVLAAMAQEQGADKLHDVVDNLIE 404 Query: 394 FLALGTSM 401 LG S+ Sbjct: 405 DNILGRSL 412 >gi|300691410|ref|YP_003752405.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum PSI07] gi|299078470|emb|CBJ51122.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum PSI07] Length = 637 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/392 (18%), Positives = 162/392 (41%), Gaps = 23/392 (5%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + L+++F F+ +G+ + GS VG + S +++ + Q +G Sbjct: 4 VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLGAQY 63 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKF 132 + + + + +LD ++ + + L +V I + P D KF Sbjct: 64 DPRQFEGSQMRRDVLDGIIQQRVMVNEASRVNLSVADSKVRETIEQIPAVAQLRKPDGKF 123 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 D ++ LA +G+ +++ L + V L+D+ + R V Sbjct: 124 DTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSTAFVPKSLVDRLIEARDQQREV 183 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 ++L + + +++ ++ + PE + Y++F + K+I ++ ++ Sbjct: 184 QALLLKPADYAGKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVTPEQ 243 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADEAFQSLKKGK-KFIQL 299 L+ Y++N ++ + E R ++ P+ +K A+E ++K F +L Sbjct: 244 LKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKTPGNFAEL 303 Query: 300 AE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+ + G + LG +K +P +++F+L + GD + V+ FG+ I + Sbjct: 304 AKKYSGDPGSAAQGGELGFLAKGATVP--PFENALFALKQPGDISDVVESDFGFHIIKLE 361 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +K S + VK ++ ++R A++K E Sbjct: 362 EVKGGGVQSLEAVKPELEREVRTQLANKKYTE 393 >gi|207724194|ref|YP_002254592.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum MolK2] gi|206589405|emb|CAQ36367.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum MolK2] Length = 648 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/407 (18%), Positives = 168/407 (41%), Gaps = 24/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++L + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285 + K+I ++ ++L+ Y++N ++ + E R ++ P+ +K A+E Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339 ++K F +LA+ + G + LG +K +P A +F+L + GD + Sbjct: 300 VLAEVRKTPGNFAELAKKYSGDPGSAAQGGELGFLAKGATVPQFDSA--LFALKQPGDIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V+ FG+ I + +K S + VK ++ ++R A++K E Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTE 404 >gi|303326078|ref|ZP_07356521.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio sp. 3_1_syn3] gi|302863994|gb|EFL86925.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio sp. 3_1_syn3] Length = 640 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 92/432 (21%), Positives = 179/432 (41%), Gaps = 39/432 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 ML+ IR ++++ K+ V+ + F+ WG+ F+ S+ VV+ V + F + Sbjct: 1 MLDYIRSNAQSFGVKVAFGVIILVFVFWGVGS--FNDRNSANVVAIVNGDPILVQQFEQA 58 Query: 60 WKQ-ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ E ++ G V E+ + L +++L +L+ L Q G+ + Sbjct: 59 YRNAEESILRNNPG--VTREQLKEQHLGRQVLRDLIQQTLLAQEAARAGVSVTPLELRQA 116 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + R F +F + + LA + I+ +Y + L R + + P + Sbjct: 117 VGRIKSFQDAQGRFDPEAYTRVLAAQRISPAQYEKDMSDQLLREKIFTLVTA---PVWVD 173 Query: 179 LDQAK-RFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 D+A+ R+ F E R VDY+ + ++ ++ +T +++ +K ++ P ++Y+ Sbjct: 174 PDEAQNRYNFLREKRVVDYLFIPAKNFSGEVKVTDQDVTAYYDAHKKDFAIPPKVDVAYV 233 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------NQKEADEAF 287 K IS + Q YE NK ++ P ++ P +K+A E Sbjct: 234 SVTPGGLVKPESISEADAQKWYEANKSRFEEPAQVKAAHILVPLAENAPADAEKKAREEV 293 Query: 288 ----QSLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 LK GK F +A+ G L I+ G K + D+ F+L K Sbjct: 294 AKIQAELKSGKDFAAVADAHNGSNAAGPGGELGWITPGKTVKPF------EDAAFAL-KA 346 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + + FG I V + KP +F++ +++ M + ++K+ + L E Sbjct: 347 GQVSEPVRSPFGLHIIKVEDKKPGGLKTFKDAAREVRQAMAQEQGADKLHDVLDSLIEDN 406 Query: 396 ALGTSMDEISRR 407 LG + E + R Sbjct: 407 ILGKPLAESAAR 418 >gi|255322620|ref|ZP_05363764.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255300181|gb|EET79454.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 487 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 101/427 (23%), Positives = 168/427 (39%), Gaps = 81/427 (18%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V F+ WG D + S +S+V VG + + F N + Q SQ Sbjct: 17 WVSTIAFV--GAGFVGWGAYD--LNASRASSVAKVGHRNISIQEFQNRYGQLHAYYSQLF 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 ++ E A +G++ L+ LV+ A L F +D+GL + + I FH + K Sbjct: 73 DGQLSDENASELGIENLALEALVNDAMLLNFADDLGLGVNDEDIVKYIIADQNFHS-NGK 131 Query: 132 FSHDVFVSRLAREGINEKEY-------------------------IDHYTKMLSRTDVVG 166 F +++ + L R E EY ID T D + Sbjct: 132 FDKELYKNTLKRARTTESEYEESLKNVILLDKLRHALNLPANAQDIDMLTASFLMQDKIS 191 Query: 167 MFVGGMRPSNLLLDQ--AKRFYFEN----RSVDYIVLNNRHVPAIADPSNA-VLTQWFEK 219 + V + +D+ K+ + E+ +++ L+ + +PAI+ +N LT+++ + Sbjct: 192 IKVVEANADEIKIDEDALKKLWEEHKNEYKTMTEFKLDTKFIPAISSDANTNELTEFYNE 251 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K+ Y+ + +K K+ E DE+ +Y + K Sbjct: 252 NKNEYKGSD------------DKIKEFEAVKDEVLKDYNLKQTK---------------- 283 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 K A E + +KK +K +D+S+ +F + SL LAKKGD Sbjct: 284 -KVALEEYLKIKKDEK-----------QADVSVSTFE----DNASLPMDELKLAKKGDTL 327 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 GY+I V I +SF E K+ I + K E V+ K L E GT Sbjct: 328 KPFEYEDGYMIVKVKEIVAPRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEKGFQGT 387 Query: 400 SMDEISR 406 + +SR Sbjct: 388 DIGFVSR 394 >gi|330817266|ref|YP_004360971.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3] gi|327369659|gb|AEA61015.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3] Length = 646 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/363 (19%), Positives = 148/363 (40%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V SV K+ + F +++Q++ Q +G ++++ + +++LD ++ L Sbjct: 39 SANVASVDGHKITRAEFDGAYRQQIDQARQALGANFDAKQFDTPERRQQLLDGIIEQRAL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + +P+ D + + LA +G+ +Y + Sbjct: 99 TDEVRRLHLTASDNAVREALMSNPIIASLRKPDGSIDAERYTQLLAMQGMTPDQYQESVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 LS++ + + + + + R + +VL A P++A L+ + Sbjct: 159 YQLSQSQLPNNLINSAFTPRSVAQRLTDLAQQQREIQAMVLKPADYAAKVQPTDAQLSAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K + PE I Y++F + S+ +L YE N ++ + ++R Sbjct: 219 YDAHKQAFATPETASIQYLVFTPAAAAANAQPSDADLHKFYEDNTARFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ D+ Q +K + A +G L ++ G Sbjct: 279 IAAARNASASDKAAAKAKAEQLLAEVTAHPDQFAQIAEKNSQDAPSA-AKGGDLGYVTRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + + D+ F+L K G+ + V+ GY I +++KP+ F EVK IA Sbjct: 338 STAG----GPAFDDAAFAL-KPGELSKVVESDLGYHILKATDVKPAVVKPFDEVKDSIAT 392 Query: 374 QMR 376 +++ Sbjct: 393 ELK 395 >gi|261496293|ref|ZP_05992697.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308055|gb|EEY09354.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 623 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 83/397 (20%), Positives = 167/397 (42%), Gaps = 40/397 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L +S ++V V +++ F N+ Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGL--ISQDNSVAKVNGEEISQQLFNNTL 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +E ++ ++G + + E A ++ +L+ L+ L Q+ +++ L ++ Sbjct: 59 NREQNRLNVELGSRFWDLMDSPEYA--AQFNQSVLNGLIDEELLRQYAKELKLGISADQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS++++ L ++ D Y ++ + G+ S Sbjct: 117 KSEIVNSQMFQ-QDGKFSNELYQQTLRHNNLS----ADGYAAIVQEGMLQSQLQEGIINS 171 Query: 176 NLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + + + E R ++ V ++ L ++E K APE Sbjct: 172 DFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQE---LRAYYEANKTKLLAPE 228 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + Y+ + E K+EI+N+++Q Y++NK Y + + + ++ EA Q Sbjct: 229 KLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQ 288 Query: 289 SLKKGKKFIQLAEEQ---------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 +LK G+ F LA+ + G L G+F K + D++ +L G + Sbjct: 289 ALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAF------EDAVANLT-AGQMS 341 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + Y I V KP + +VK IA +R Sbjct: 342 AAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIR 378 >gi|300703976|ref|YP_003745578.1| peptidyl-prolyl cis-trans isomerase (rotamase d) [Ralstonia solanacearum CFBP2957] gi|299071639|emb|CBJ42963.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum CFBP2957] Length = 649 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 76/407 (18%), Positives = 168/407 (41%), Gaps = 24/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDAVITTSELDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRVMANEASRTNLSIADSKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARVRSELVLQQIPQSIVASAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++L + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIDARDQQREVQALLLKPADYVSKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285 + K+I ++ ++L+ Y++N ++ + E R ++ P+ +K A+E Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNVARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339 ++K F +LA+ + G + LG +K +P A +F+L + GD + Sbjct: 300 VLAEVRKAPGNFAELAKKYSGDPGSAAQGGELGFLAKGATVPQFESA--LFALKQPGDIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V+ FG+ I + +K S + VK ++ ++R A++K E Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTE 404 >gi|88608708|ref|YP_506523.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama] gi|88600877|gb|ABD46345.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama] Length = 594 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 109/226 (48%), Gaps = 4/226 (1%) Query: 36 SVSGSST--VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93 S++GS + V SVGR+K+ F++ +K+ F + + + +G+ + +L L Sbjct: 36 SITGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFDFRLTDTQLKDIGVGRIVLTTL 95 Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 + ++Q + +GL D +I ++P+F+ ++ KF L R + E+EYI Sbjct: 96 IQDKVIEQLFKQMGLHIDTSIAIDKIKKNPVFN-ENGKFDRAKLDDFLDRNDLTEREYIR 154 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 + + + V G F L + F + + V ++ +P P+ + L Sbjct: 155 KVKREIGKDFVFGPFFNIQGEYGKLAELFYNFEYGLKEVSIAKVDKNALPTPPVPTESEL 214 Query: 214 TQWFEKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYE 258 ++E+ KD + + EY+ + IL + + K + +E++++++Q +E Sbjct: 215 VSFYEENKDKFFSDEYRAAACILISEDNVKPELVEVADEDVQKSFE 260 >gi|291287880|ref|YP_003504696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] gi|290885040|gb|ADD68740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] Length = 633 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/391 (21%), Positives = 170/391 (43%), Gaps = 42/391 (10%) Query: 17 FLVVLFVP--FLIWGLSDALFS------VSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 F++ FV F +WG+ D + S V G + R KV + N ++Q G Sbjct: 18 FVIAAFVGTIFFVWGVGDKVQSQLYAAKVDGVTITDQEFRDKVENTR--NQFRQLFGNNI 75 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 +I + L+K +++ L++ L + + A V I F Sbjct: 76 DEI--------LKGDTLEKTVMETLITETLLRNEANRLNIPASDAEVAANIQSVQAFQ-T 126 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 D +F ++V L+R + + + + ++ + + + S+ ++Q F ++ Sbjct: 127 DGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQEVEQ--EFIYQ 184 Query: 189 NR--SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 N ++ Y+ L + + ++ LT +F+++K+ YR PE Y+ FD + + Sbjct: 185 NTVATIRYLELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTFDPETYKGEF 244 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK-------GK 294 S+ E++ + +NK + PE ++F ++K A E +Q KK G Sbjct: 245 ITSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIYQKAKKVRKEIVDGA 304 Query: 295 KFIQLAE---EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F ++AE E + + LG F++ + +P+ ++ F+ G+ + V+ FG+ I Sbjct: 305 DFAKMAEKYSEDSTAQNGGELGFFTRGQMVPE--FENAAFT-TNPGEVSDVVKTQFGFHI 361 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 +V PS + EVK +IA ++ K++ Sbjct: 362 INVEEYIPSTDPTLDEVKDEIAALIKDQKSA 392 >gi|323143442|ref|ZP_08078125.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066] gi|322416727|gb|EFY07378.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066] Length = 642 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 87/408 (21%), Positives = 168/408 (41%), Gaps = 26/408 (6%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R+ ++ + KI ++ + F+ G+ L + V VG K+ N W Q+ Sbjct: 6 LREGAQGRIFKILFWIIILSFIFTGVGGYLIPRLNTDPV-EVGEYKIT----ANEWNQQY 60 Query: 65 GMISQKIGFVVNSERARSV-------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q++ + + A + L +IL+ ++ + + D+ + +V Sbjct: 61 TSQTQQMQRMYGARYADMLEDPQYVSNLRSQILEGMIDNVAFNSAVYDLNVRIGDEQVRE 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG--MFVGGMRPS 175 I +P F KD KF +D++++ + G+N EY ++ + V + P Sbjct: 121 LIRTTPAFQ-KDGKFDNDLYLAVIRNMGMN-PEYFGEQMRISAMATSVSDPILRTASYPL 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + + R++D LN + A + +++ + D + AP + +YI Sbjct: 179 PYEISALENLLTQTRTIDLYELNLDALRAGFSADDNEAKAYYDAHHDAFMAPANVKFNYI 238 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSL---- 290 L V E +K I ++DEL+ +++ + PE R ++ + +A++ +S+ Sbjct: 239 LLTVDELKKGINPTDDELEEYLTLHQDDFKVPEHRGFSHIIVRSDNPDAEKIVKSIDDGF 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL----ADSIFSLAKKGDFTPVIHGSF 346 GK F LA+E LS +G E I SL AD +F+L G T I + Sbjct: 299 AAGKSFADLAKEYSDDLSTKDIGGDMGEII-RASLAPIFADKLFALETIGSHTDKIVDAD 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G +++I E+K + N KA E E L + Sbjct: 358 GTHYLQLNSIVKEHIPQLNEIKDQVKNACIDAKARELFNERVTTLSDM 405 >gi|322652369|gb|EFY48724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 481 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 99/493 (20%), Positives = 210/493 (42%), Gaps = 39/493 (7%) Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADP 208 D Y + L + G+ ++ +L D+ + R V V++ + A Sbjct: 8 DQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQV 67 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 ++ ++ ++++ K + PE R+SYI D + + S+ ++QA Y+++ +++ PE Sbjct: 68 TDQEVSSYYDQNKARFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPE 125 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDV 323 + + +A +L KG+ F LA+E+ + G +P++ Sbjct: 126 RIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPEL 185 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 A L +KG + VI S G+++A + +I+P+ EV+ DIA +++ EK Sbjct: 186 KNA----GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEK 237 Query: 384 VKEDYKRLEEFLALGTSMD--EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL- 440 + Y L++ ++ S D ++ E++ + + +D +E+ P + + Sbjct: 238 ALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEEMNFKPVADAIFN 297 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + G++ + + DG + V++ E P + L EV V K K ++ Sbjct: 298 GGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQA 357 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGP 556 A +L++E K GK + K G S ++R D +SQ S P Sbjct: 358 KLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLP 408 Query: 557 VEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 + + + N + + V+ K G P +K + +TQ + + +++++ L+ Sbjct: 409 TKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLRK 468 Query: 613 QYSVTVHDNLIQR 625 + + + D L Q+ Sbjct: 469 EAKIKIGDALEQQ 481 >gi|317154730|ref|YP_004122778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio aespoeensis Aspo-2] gi|316944981|gb|ADU64032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio aespoeensis Aspo-2] Length = 632 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 135/666 (20%), Positives = 272/666 (40%), Gaps = 89/666 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSS 55 MLEI+R+ + W+ KI ++ V F+ F +SG T + +V Q + + Sbjct: 1 MLEIMRENASGWIVKILFGIIIVVFVF------AFGMSGLETGQDPILATVNDQIITRAE 54 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F +++++ + + V + + + +L L++ L +G+ A V Sbjct: 55 FEDAFQRAAEGV-RTANPDVTPAQLQDPQFKQMVLGELINSRLLLHEAARLGISASDEEV 113 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 + I R F + F D++++ L + + ++ + + G +R + Sbjct: 114 FAAITRQSYFWNQAGAFDRDIYMAALRSIRMTPALFEANFKNEM----IAGKVQDMVRKT 169 Query: 176 NLLLDQAKRFYF----ENRSVDYIVLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAP 227 + + R F E VDYI+ + PA P V + +++ +D + P Sbjct: 170 GVATPEQARQIFDWVGEEVRVDYILSS----PAAFAPQVRVDAKEVDEFYASNQDKFMVP 225 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA 286 E RI Y+ F + + E+S+ E+ A + N E ++ L+ + ++DE Sbjct: 226 EQVRIRYLAFTPKDLAARQEVSDPEIDAYFAANSASMKQEEQVKASHLLIMTSDSDSDEE 285 Query: 287 FQSLKK-----------GKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFS 331 +K G F LA + + S LG F + + +P+ A FS Sbjct: 286 QAEARKKIDAAYAKAKAGGDFATLARQNSEGPSAAGGGDLGWFGRGDMVPEFEQA--AFS 343 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 KG + + FG+ I +V + K + ++ EV+KDIA + KA+E+V + + Sbjct: 344 -TPKGQVSEPVRTQFGWHIIYVEDRKEARELALDEVRKDIAIAIAEEKAAERVTDLLDQA 402 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG------ 445 + L G ++D ++ +++ V + P EQ L + FG Sbjct: 403 MDRLVSGMTLDAVADELGMLA-----------------VTSSPLPEQGLVQNFGLTPEAA 445 Query: 446 ---KDDPLSKDHTVALP-DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 D ++ H L +G YM V+ E IPA ++EV ++ K A + Sbjct: 446 TVVMDIQKNESHKTPLSINGGYMLVEKVEDIPAAPLPIDEVRDAIEGAITQQKAAALAMT 505 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE--- 558 +A +++ + + G + + A + T+ +R N +++ G Sbjct: 506 EAQEILAQLT--GPDSAEAAARYAARIKTSEPFDRQGNVPALGQSQALAEAAFGSAGKEW 563 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDSVIAYLKS 612 + + F ++ G+ +V ++ S+V P E KD +I +Q ++L++ + L+ Sbjct: 564 LPQPFAMQQGI--IVARL--SEVIPASEETWAEQKDAWIDQASQNYQLEVLNAYMTGLRQ 619 Query: 613 QYSVTV 618 Q + + Sbjct: 620 QADIEI 625 >gi|261346360|ref|ZP_05974004.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM 4541] gi|282565674|gb|EFB71209.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM 4541] Length = 622 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 83/387 (21%), Positives = 160/387 (41%), Gaps = 31/387 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M+E +R + + K+ L ++ + F++ G+ A + + GSS V Q + + Sbjct: 1 MMEDLRTKANSPFIKVLLAIIILSFVLTGV--AGYVIGGSSNDAAEVNGQPISREQLQQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++QE + + +G N E + L + L+NL++ ++Q+ ++ L A + Sbjct: 59 FQQERQSLQEYLGDKFAEVASNDEYMKE--LRTQALNNLINTQLINQYANELNLSASDKQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--M 172 + I +F D KF + + L+R IN + + L R + F G Sbjct: 117 IEQAIFAMQIFQ-TDGKFDSEKYREILSRYNINADSFAAQIRQDLVRAQLGKSFTGTEFA 175 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 PS + + + R V +L V A + L +++ ++++ +PE ++ Sbjct: 176 LPSEV--KAYAELFMQQREVRTAMLPLAEVQAKQTVTEEELKAYYDANQNSFISPEQVQV 233 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 SY+ D K ++++E+ Y++N + + E + + ++K+A LK Sbjct: 234 SYVEMDAASMPKAT-VNDEEITTYYQQNLKNFTKAEQKLYSMIQVASEKDAQALETELKN 292 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKE------YIPDVSLADSIFS--LAKKGDFTPVIHG 344 G F LA E+ S FS ++ S I S L +KG + I Sbjct: 293 GADFAALAAEK-------STDKFSASNKGVIGWMEAASTPSEIISANLTEKGQVSAPIKV 345 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDI 371 YV+ + +I P EVK I Sbjct: 346 QDNYVLFRLDDITPEAIKPLDEVKDSI 372 >gi|241758711|ref|ZP_04756824.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114] gi|241320919|gb|EER57132.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114] Length = 617 Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 171/401 (42%), Gaps = 48/401 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N+ +R I +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 64 --NNAPSRDA-----IFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236 Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301 Q Y+ +K SP EI + V PN EA D+ LK F +LA Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAA 295 Query: 302 EQGKSLSDI----SLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + K LS +LG SK + P+ A F+L KG+ + I S GY + V Sbjct: 296 KYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKA--AFALG-KGEVSDTIKSSLGYHVIKV 352 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKED 387 N++ T ++ K I +++ KA+ EK+ ED Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGED 391 >gi|121609649|ref|YP_997456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] gi|121554289|gb|ABM58438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] Length = 643 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 87/423 (20%), Positives = 173/423 (40%), Gaps = 58/423 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E IRK S+ + IFL +L +P F++ G FS S V V + + + + Sbjct: 1 MFETIRKHSK--IVMIFLFLLIIPAFVLVGTDRNYFS-EASPVVARVDGHDISQADWDRA 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDN-LVSGATLDQFIEDIGLEA-------- 110 +QE I RA+S +D ++LD+ L ATL++ + + L+A Sbjct: 58 HRQESDRI-----------RAQSPTVDARLLDSPLARYATLERLVRERVLDAAAQQMRLV 106 Query: 111 -DHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 R+ + +P D D + + L +G+ + + + + ++ V+ Sbjct: 107 TSDARLIRSLQETPAIAALKRADGTLDADAYRALLVGQGVTPEVFEANLRRNIAADQVLD 166 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + +N A +E R + + P++A L +++ + +R Sbjct: 167 AVLSTALVANAQARLALDALYERRDIQVARFDAPDFAGRVLPTDADLQSYYDAHPAQFRQ 226 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADE 285 PE + Y++ D+ I + DEL++ Y+ + + + + R ++ K+A Sbjct: 227 PEQATVEYLVLDLDSVRATITVPEDELRSYYDSDYLPRIMAKQERRASHILISVAKDAPA 286 Query: 286 AFQSLKKGKK-------------FIQLAEEQ---------GKSLSDISLGSFSKEYIPDV 323 A + K + F LA++ G L+ + G+ +K + Sbjct: 287 AEREKAKARATELLAQLRKTPADFAPLAKQSSDDKGSAAAGGDLNFFARGAMTKPF---- 342 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 +++F+L KKG + V+ FGY I +++IK F+E + IA ++ +A + Sbjct: 343 --EEAVFAL-KKGQISDVVETEFGYHIIELTDIKTPPQPGFEEARAVIAAELGQQRAQRQ 399 Query: 384 VKE 386 E Sbjct: 400 FAE 402 >gi|94310820|ref|YP_584030.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] gi|93354672|gb|ABF08761.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] Length = 647 Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 111/536 (20%), Positives = 213/536 (39%), Gaps = 60/536 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R +R + + LV++F F+ +G+ + S V + + N Sbjct: 1 MLDFVRN-NRRLMLLLLLVLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAITVQEVDNVV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q +G + + +LD L+ + + + L ++ I Sbjct: 60 RDQSERMRQMLGNNYDPRMFEGPAARQAVLDQLIQQRVISEATQKKHLTVSDAQIAAAIQ 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG--GMRPS 175 P D KF +V LA +G+ E +D + T +G +G P Sbjct: 120 SIPAIAQLRTADGKFDEKAYVQLLAAQGMT-PEQLDARMRFELSTQQLGGAIGTTAFVPK 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +LL D+ + R V IV+ A P A L ++E + Y PE ++ Y+ Sbjct: 179 SLL-DRLIAIRDQQRDVQAIVIKPADFTAKVTPDAAALKAYYESHLAAYTMPEQAKVEYL 237 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + I+ D+L++ Y+ N +++ + E R ++ K+ EA + K K Sbjct: 238 VLSGDALAASQTITPDQLKSYYDSNIQRFHTDEQRRASHILIAAPKDGKEADRKAAKEKA 297 Query: 296 -------------FIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 F +A+ E+G L + G+ K + D++F+L Sbjct: 298 EKLLEDLRKHPDTFADVAKKNSQDPGSAEKGGDLGFMGRGALVKPF------EDAMFAL- 350 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-- 391 K G + V+ +GY I ++ IKP+ T + V+ ++ +++ A++ E Sbjct: 351 KDGQISDVVETDYGYHIIKLTGIKPAATEPLEAVRPELEIELKKQLAAKAYTEQADAFGN 410 Query: 392 ---EEFLALGTSMDE----ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 E+ +L + D+ I + + P++ GKD P + + + Sbjct: 411 MVYEQSESLKPAADKFKLTIQTADNVTRTPNPVL---GKDN--------PLNNEKVLKAL 459 Query: 445 GKDDPL-SKDHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 DD + +K +T A+ G V +I + PA RK EEV V++ + + AE Sbjct: 460 FSDDAIKNKRNTEAVQVGPTTLVSARIVDYRPAAARKFEEVEALVRQAYVAQQAAE 515 >gi|118594828|ref|ZP_01552175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales bacterium HTCC2181] gi|118440606|gb|EAV47233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales bacterium HTCC2181] Length = 627 Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 85/399 (21%), Positives = 176/399 (44%), Gaps = 28/399 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ + +AK+ L ++ +PF ++G+ L SV + + V + + N+ Sbjct: 1 MLDKIRNSTDSKLAKVILAIIIIPFALFGIDSYLSSVGSNVYIAKVNGVDISAQQYQNTE 60 Query: 61 KQELGMISQKIGFVVNSERA--RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 MI +++ N++ A S K +LDNL+S ++Q I+ G + ++ Sbjct: 61 ----AMIREQMT-DPNTDPALFDSPEFKKAVLDNLISTELMNQSIDKNGFVISNEQLSSY 115 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F ++ KFS + + + + K+ D ++ + N + Sbjct: 116 IVGMPDFQ-ENGKFSQERYDQIVQYNNLTPKKLEDRIRTQMATQQAKDSINRLIYVPNEI 174 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ R + + P++ + Q++++ N+ P+ +I ++++ Sbjct: 175 TQPLVNLAYQKRDISLHEIRLDDYKKKIKPTDDEVKQFYDENTSNFIMPDRVKIEFLIYS 234 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------KEADEAFQS 289 V I +SN+E + ++ NK K+ + + R + ++F Q + D A + Sbjct: 235 VAGIVPTISVSNEEARQFFDANKGKFEANQQRRAKHILFAYQPGIDFEEKARIRDLAQTT 294 Query: 290 LKKGKKFIQLAEEQGKSLSDIS--------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 L + KK ++ E + K LS + LG FS+ + AD++F L G + + Sbjct: 295 LNEIKKSPKIFENKVKELSQDTESAKQGGDLGFFSRGDMVK-PFADAVFGLKVDG-LSGL 352 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + FG I +++IK VSF ++K I ++ KA Sbjct: 353 VETEFGLHIIKLTDIKGE-QVSFDKIKTQIKGELLYGKA 390 >gi|225075250|ref|ZP_03718449.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens NRL30031/H210] gi|224953425|gb|EEG34634.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens NRL30031/H210] Length = 617 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 171/401 (42%), Gaps = 48/401 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N+ +R I +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 64 --NNAPSRDA-----IFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQNVSAEEV 236 Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301 Q Y+ +K SP EI + V PN EA D+ LK F +LA Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAA 295 Query: 302 EQGKSLSDI----SLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + K LS +LG SK + P+ A F+L KG+ + + S GY + V Sbjct: 296 KYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKA--AFALG-KGEVSDTVKSSLGYHVIKV 352 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKED 387 N++ T ++ K I +++ KA+ EK+ ED Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGED 391 >gi|303253594|ref|ZP_07339732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245913|ref|ZP_07527996.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247999|ref|ZP_07530028.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254886|ref|ZP_07536708.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257049|ref|ZP_07538824.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259327|ref|ZP_07541054.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302647514|gb|EFL77732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853132|gb|EFM85354.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855397|gb|EFM87571.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862127|gb|EFM94099.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864420|gb|EFM96328.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866563|gb|EFM98424.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 625 Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 80/395 (20%), Positives = 167/395 (42%), Gaps = 36/395 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKR 231 + + + + + V + A + A + +KY D +++ PE Sbjct: 172 DFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLT 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y+ + +++++++++ YEKNK Y + + N+ +A + +K Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341 G F +LA+ QG L G+F K + SL D G + V Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ Y I V K + ++VK I +R Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378 >gi|308270798|emb|CBX27408.1| hypothetical protein N47_H22300 [uncultured Desulfobacterium sp.] Length = 632 Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 92/439 (20%), Positives = 192/439 (43%), Gaps = 26/439 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + +W+ K L ++ V F+ WG+ F + ++ V V + + + ++ Sbjct: 1 MLDFMRKNAGSWMIKAILGIIVVVFVFWGVGS--FRSNRANRVAKVNGEVITVREYQEAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + I K+G N E ++ KK LD+L+ L Q + + + I Sbjct: 59 NNLVEQIRAKLGTNYNEETLKAFNFKKKALDDLIVKKLLVQEAKKLKFRVTDDELVKLIG 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D F+ + L+R E+ + L ++ ++ S+ Sbjct: 119 SIKAFQV-DGVFNKKEYERVLSRNHTVPDEFEATVRESLIMERLISFITSSVKVSDNEAL 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + +VDY+ I +PS L ++F+K K++YR + +++Y+LF Sbjct: 178 EWFNWKGASVNVDYVFFTPDKYNGI-NPSQKELNEYFDKNKESYRTEKKVKVAYLLFSPD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 ++++ ++E++ YE N +K+ +PE ++ + A D F+ Sbjct: 237 SFITQVKVDDNEVKEYYENNIDKFTNPETVEASHILCKIDEGANPAAVQAAKQKADNVFK 296 Query: 289 SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K+G+ F +LA++ S LG+F K+ + + A FS+ K+G+ + + Sbjct: 297 MIKEGQPFEELAKKYSDCPSKADGGHLGAFGKKDMVE-PFASKAFSM-KQGEISEPVLTK 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEI 404 FG+ I V + + +E + +I ++ SEK K+ Y E+ L +M+++ Sbjct: 355 FGWHIIKVEKVNKEKMLVLKEAESEIRKKL----ISEKAKKLAYDEAEKICDLAINMNDL 410 Query: 405 SRREKIVSIDLPLVDFAGK 423 + + + + DF K Sbjct: 411 IKASEKSGVKIKTTDFFSK 429 >gi|93006476|ref|YP_580913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter cryohalolentis K5] gi|92394154|gb|ABE75429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter cryohalolentis K5] Length = 624 Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 79/421 (18%), Positives = 176/421 (41%), Gaps = 21/421 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF---IN 58 ++ +R ++W +I L++ P + G+ + + VG + S + +N Sbjct: 1 MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + EL + V ++ L +++L L+ L+Q +G+ + Sbjct: 61 NRRTEL------LDQVDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRL 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + + +F G D +FS+D F S L + + + + D + LS + VG Sbjct: 115 LRQEEIFKGADGEFSNDQFASFLRQRNMTKNQLFDEFRNQLSLDQLNASIVGTAAYPMKA 174 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + Q E R++ N + + S + +++ KD ++ ++Y+ Sbjct: 175 VSQLINLQLEARNIWLHRFNWQDYVSKVKLSKNDIQAYYDANKDTLKSAAMVDLAYLQLS 234 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---QKEADEAFQSLKKGKK 295 + E++ ++LQ +YE K+ + R + Q++ + AD+ L KG+ Sbjct: 235 PQTIQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKIKARLAKGEA 293 Query: 296 FIQLAEEQ-----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F ++A+ + G++ DI G F+ + D + + GD + + SFGY Sbjct: 294 FAKVAKAESDDPSGETGGDI--GRFNPSVFGNDAAAVEKALEGLSVGDISVPVKTSFGYQ 351 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I V+ + S + ++ D+ + + K E + + + A G S+++I+++E Sbjct: 352 IFTVTEDNGNKIPSLESMRDDLIAKAKEYKRQEIYADKVTAINDLAADGFSIEDIAQQEN 411 Query: 410 I 410 + Sbjct: 412 V 412 >gi|299066735|emb|CBJ37929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum CMR15] Length = 637 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 71/392 (18%), Positives = 159/392 (40%), Gaps = 23/392 (5%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + L+++F F+ +G+ + GS VG + S +++ + Q +G Sbjct: 4 VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLGAQY 63 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKF 132 + + + + +LD ++ + L +V I + P D KF Sbjct: 64 DPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIEQIPAVTQLRKPDGKF 123 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 D ++ LA +G+ ++ L + V L+D+ + R V Sbjct: 124 DTDAYIKLLAAQGMTPDQFDARVRSELVLQQIPQSIVSSAFVPKSLVDRLIEARDQQREV 183 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 ++ A + + +++ ++ + PE + Y++F + K+I ++ ++ Sbjct: 184 QALLFKPADYAAEVTADDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVTPEQ 243 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADEAFQSLKKGK-KFIQL 299 L+ Y++N ++ + E R ++ P+ +K A+E ++K F +L Sbjct: 244 LKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKSPGSFAEL 303 Query: 300 AE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+ + G + LG +K +P +++F+L + GD + V+ FG+ I + Sbjct: 304 AKKYSGDPGSAAQGGELGFLAKGATVP--PFENALFALKQPGDISDVVESDFGFHIIKLE 361 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +K S VK ++ ++R A++K E Sbjct: 362 EVKGGGVQSLDAVKPELEREVRTQLANKKYTE 393 >gi|91775766|ref|YP_545522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] gi|91709753|gb|ABE49681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] Length = 626 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 89/416 (21%), Positives = 174/416 (41%), Gaps = 61/416 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ W+AK+ L + +PF + G+ L S V V + + + N+ Sbjct: 1 MLEAIRNRSKGWLAKVILAAITIPFALVGVDSYLRDAGSSVAVAKVDGESITVQEYSNAL 60 Query: 61 K------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + Q G + Q + + E L + ++D+LV G L ++ + Sbjct: 61 QNLRNRLQSEGKVDQAV--IDGPE------LKQAVIDHLVEGRLLANEVKRAKFVVSDEQ 112 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMR 173 + I + FH +D +FS ++ LA ++ + T +L+ G+ Sbjct: 113 LSHYIMQEESFH-QDGQFSQALYDQFLAERRRTPSQFENEVRTDLLTMQAREGLSALAFV 171 Query: 174 PSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 P+ + + K + E R+ DY+ V D NA ++++++D ++ Sbjct: 172 PNGVANNAIKVAHQSREVSIAEFRTADYL----SQVKVTEDEVNA----YYKEHQDKFKV 223 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PN 279 PE ++ ++L + +++ +E + Y +N ++ E R ++ P Sbjct: 224 PEQVKLEFVLLSANALIPSQQVTEEEAREYYAQNAAQFQGDEQRRASHILIGFGVSPTPE 283 Query: 280 QKE-----ADEAFQSLKKG-KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVS 324 K+ A+E +KK ++F QLA + +G L G+ K + Sbjct: 284 TKQKAKEKAEEVLALVKKNPERFEQLAHQYSQDPGSKDKGGDLGLFGPGTMVKPF----- 338 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D++FS+ K G + ++ FGY I ++ I S SF++V+ I ++ KA Sbjct: 339 -EDAVFSM-KPGTISDLVETDFGYHIIKLTEIHGSGQ-SFEDVQGQIRAELMYQKA 391 >gi|26989028|ref|NP_744453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida KT2440] gi|24983852|gb|AAN67917.1|AE016424_3 peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida KT2440] Length = 623 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/405 (20%), Positives = 175/405 (43%), Gaps = 18/405 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS + F + + G ++ +ML ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFSAERFDQVIRQMGYGRMQF----REMLGEEMLIGQLRTGLAGSSFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + E ++ D+ L + PA S+ + ++++ + +P+ I YI Sbjct: 176 QQVDAFARLEKQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLK 291 +++++++EL+A+YEK ++++ + + V V Q + A+E Q L Sbjct: 236 KSAFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G F+ + D + ++++ L + G + + FGY Sbjct: 296 KGEDFAALAKEFSQDPGSANTGGDLGFAGPGVYDPAFEEALYKL-QDGQVSAPVRTEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + ++ SF +K + +++ ++ + K+L++ Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQD 399 >gi|17546434|ref|NP_519836.1| peptidyl-prolyl cis-trans isomerase transmembrane protein [Ralstonia solanacearum GMI1000] gi|17428732|emb|CAD15417.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein [Ralstonia solanacearum GMI1000] Length = 648 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/407 (18%), Positives = 167/407 (41%), Gaps = 24/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVR-THRRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++ A + + +++ ++ + E + Y++F Sbjct: 180 LVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPN----------QKEADE 285 E K+I ++ ++L+ Y++N ++ + E R ++ P+ +K A+E Sbjct: 240 SGEEMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339 ++K F +LA+ + G + LG +K +P +++F+L + GD + Sbjct: 300 VLAEVRKSPGSFAELAKKYSGDPGSAAQGGELGFLAKGATVP--PFENALFALKQPGDIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V+ FG+ I + ++K S VK ++ ++R A++K E Sbjct: 358 DVVESDFGFHIIKLEDVKGGGVQSLDAVKPELEREVRTQLANKKYTE 404 >gi|319638362|ref|ZP_07993124.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102] gi|317400111|gb|EFV80770.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102] Length = 617 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 139/631 (22%), Positives = 258/631 (40%), Gaps = 77/631 (12%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N+ +R + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 64 --NNAPSRDA-----VFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ + + +K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALSIKDLAEKQTVSAEEV 236 Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301 Q Y+ +K SP EI + V PN EA D+ LK F +LA Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDSFAELAA 295 Query: 302 EQGKSLSDI----SLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + K LS +LG SK + P+ A F+L KG+ + + S GY + V Sbjct: 296 KYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKA--AFALG-KGEVSDTVKSSLGYHVIKV 352 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKEDYKRLEEFLALGTSMDEISR 406 N++ T ++ K I +++ KA+ EK+ ED LA + + Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAVANSGL-- 408 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYM 464 K+ S+D + K+ A +P E L+ F DD L K H V + + Sbjct: 409 --KVESLDEWVTKAGAKE------AGLP--EALINAAFS-DDVLKKKHNSEVIAINNDTV 457 Query: 465 WVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 WV I A++ + E++ +VK TV+ A + S+A +L + ++E GK Sbjct: 458 WV-----IRAKEVREEKIAPFAEVK---DTVRAA-YLRSEAVKLAEKKAQETLAALKAGK 508 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 +Q++ D + + + PV + + G+ V S Sbjct: 509 TADVQWSPVSQLSAQDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSA 568 Query: 583 PVQEKDKFIS---YLTQMMNKDLLDSVIAYL 610 P + + L Q ++ ++ D+++ YL Sbjct: 569 PENADSQIPASKQALVQQLSANVFDALLQYL 599 >gi|209521454|ref|ZP_03270162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] gi|209498110|gb|EDZ98257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] Length = 644 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 25/404 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + + LV+L P L + G+ ++ V SV K+ + ++ Sbjct: 1 MLDFFRTHQRLMMFMLILVIL--PGLGFVGIQGFRGFFDENANVASVNGHKITRVEYDDA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L Q +G + + + + +LD ++ L + + L A V + Sbjct: 59 MRQQLDRGRQMLGAQFDMKSFDTPERRRMMLDGMIEQRVLADETQRLHLTASDDAVRRTL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D D + LA +G+ +Y + L+ + S Sbjct: 119 MSDPVISSLKNPDGSIDLDRYKQLLAMQGMTPDQYDERVRYNLAMQQLPASIEASAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLTELAQQQREVQGIAFHPHDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFP-----------NQKEAD 284 ++ S+ +L+ Y+ N + + E+R L+ ++ A+ Sbjct: 239 MSPATLSASMQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASAADKAKAKQTAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E +K +F Q+A++ + S LG F + I + D+ F+L KK + Sbjct: 299 ELLAQVKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAAFAL-KKDEI 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + ++ FG+ I V+++KP+ T SF EVK IA +++ A++ Sbjct: 358 SGIVQSDFGFHIIKVTDVKPTVTKSFDEVKDQIAKELKTQLATK 401 >gi|302344093|ref|YP_003808622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] gi|301640706|gb|ADK86028.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] Length = 649 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 92/441 (20%), Positives = 178/441 (40%), Gaps = 37/441 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVP------- 52 MLE++R+ + W+ KI L ++ + F L +GLS S G + V Q + Sbjct: 1 MLELMRRQAGNWIIKIILGLIALAFALSFGLSPNFGSNPG--VAMKVNDQPIMEDAVSEL 58 Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 + +Q+ G K+ ++N L ++ L +L+ L Q + +GL + Sbjct: 59 YGRMTEQARQQFGDNFDKLAPMLN--------LRQQALYSLMDRLLLAQAAQRMGLGVSN 110 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + I F + KF ++ RLA + E+ + + L + + M G Sbjct: 111 RELASSIQDMAAFQ-VEGKFDMRLYQQRLAANRLTEERFENSVRADLLQGKIAAMVGGSG 169 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + + L +DQA + Y+++ + + + +E +K Y P R+ Sbjct: 170 QVTPLQVDQALQEALSRADAVYLLVKPEDLLDSVKVGEDEIAEHYESHKGLYMNPATLRV 229 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF----- 287 Y+ V K +++ DE+ YE + +Y PE ++ EADEA Sbjct: 230 DYVALPVSAFRDKADVAEDEIIDAYEMDWRQYSRPEEVRARHILIELAPEADEAQKAKAK 289 Query: 288 -------QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + G+ F ++A+E K S LG F + + V D + G Sbjct: 290 AQALALLEKARAGEDFAKMAKEYSKGPSADKGGDLGYFQRGQM--VGPFDELVFKMTPGQ 347 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 V+ FG+ + + + K + V +E + +I ++ +A + + + L + LA Sbjct: 348 IE-VVETEFGWHVVKLEDKKKARIVPLEEARGEIKARLAEQQAKDLAMQAAEGLFDALAA 406 Query: 398 GTSMDEISRREKIVSIDLPLV 418 G ++ ++ K+V P V Sbjct: 407 GQPLEAAAKERKLVVEQPPAV 427 >gi|167950936|ref|ZP_02538010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 331 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/312 (20%), Positives = 135/312 (43%), Gaps = 27/312 (8%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK----DNKFSHDVFVSR 140 + ++L ++ G+ L Q D+GL RV ++ RS + + D F ++ Sbjct: 7 MRAEVLQEMIRGSLLRQVSHDMGL-----RVGDQLIRSAILGIEAFQVDGHFDKALYERG 61 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 + +G +E + + L + + + +++ R + R Y L Sbjct: 62 VRLQGTSEAGFEQRVRQALLSEQLSQAVQNSVFATQREIEELIRLRNQTRDAAYFTLPVA 121 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + + ++ +++ +++ + APE +I Y+L +++ + L+ YE + Sbjct: 122 DFLSDEEIPIDLVESYYQSHQNEFLAPEQVKIEYLLLSAEAIAPTLDVQEEALRGYYEAH 181 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAF------------QSLKKGKKFIQLAEEQ----G 304 E Y PE R ++ ++ADEA Q ++ G+ F LA+ + G Sbjct: 182 LESYGRPEQRRASHILVQVAQDADEATVAAAKEKIASLRQRVEAGEAFADLAKSESQDPG 241 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + + LG F K I D + + F+L K+G+ + + SFG+ + +S IK SF Sbjct: 242 SAAAGGDLGFFGK-GIMDPAFESATFAL-KEGELSEAVRSSFGFHLIRLSEIKSGDVKSF 299 Query: 365 QEVKKDIANQMR 376 +E ++++ + R Sbjct: 300 EEARQEVESAYR 311 >gi|305433211|ref|ZP_07402367.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20] gi|304443912|gb|EFM36569.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20] Length = 495 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 106/408 (25%), Positives = 175/408 (42%), Gaps = 41/408 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V FL WG D F+++ SS+V VG +K+ ++ F + Q +Q Sbjct: 17 WISTIAFVG--AGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFNVRYNQIFNYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 +N E A+ +G++ L +LV L F +D+GL + V +A + F Sbjct: 73 NGGLNEESAKQLGIENAALSSLVEDKLLLNFAKDLGLGSSENEVIQALAETKAFQDPSGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFEN 189 F+ ++ L + KE Y K LS ++G + + ++ L YF Sbjct: 133 FNKTIYYELLNANNMTPKE----YEKTLSNEIIIGKLEQIFNLPQTDEELKMLGASYFMQ 188 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS--YILFDVHEKEKKIE 247 S++ L + L + + ++K++Y+ + IS Y+ D+ KI+ Sbjct: 189 DSLNIAKLEQDKENIKVNEEE--LKKLWNEHKEDYKTKKVYEISTYYLPVDMQ----KID 242 Query: 248 ISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQ 303 S E E NK KY FS +I + E D A LK KF++L E + Sbjct: 243 DSKLEEFYNNENNKFKYKDFSGKIMSFE--AAKKDVAKDYALAQLKNIANAKFLELKEGK 300 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 K D ++ S Y P +L S K GD GY+I ++ P T + Sbjct: 301 DKFQKDENITD-SDVYYPLEAL-----SRVKNGDVLRPSEYQNGYIIIKLNKTNPVRTKT 354 Query: 364 FQEVKKDIANQMRITKASEKVKEDY-----KRLEEFLALGTSMDEISR 406 F E K+++ M I SE+VK++ + LE F GT++ +SR Sbjct: 355 FDEAKEEL---MPIY-ISEQVKKNLEEKAKQNLENF--SGTNIGFVSR 396 >gi|221135500|ref|ZP_03561803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp. HTCC2999] Length = 626 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 99/542 (18%), Positives = 220/542 (40%), Gaps = 43/542 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +R+ + A I + ++ + F+ G+ L S ++ V + + + ++ Sbjct: 1 MLERMREGLQGPWAMIIVALIVLSFVFAGVGSYLASPVDTA-AAKVNGEDISARALDQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + + G ++S A + IL+ LV+ ++Q + +GL ++ Sbjct: 60 QNERARLESQFGEGISSLFANPEYLANFRQGILERLVADKLVEQKAQALGLRVSDTQIKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSN 176 I P F F++D +++ L + G ++ ++ +++ + + N Sbjct: 120 TILSMPEFQ-VGGVFNNDRYLAVLRQAGFQVDDFRNYMRNTMTKEQLSRALLATDFVVPN 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ Q + R V Y + + + S+ +T +++ D Y E I Y+ Sbjct: 179 EVITQLN-LGRQTRDVKYATIPTANFADTIELSDLDITNYYQTNIDTYDTQEQVSIEYVE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQS 289 V + + ++ +++ Y+ N Y + R V ++ + + + E Sbjct: 238 LKVSDLMDGVNATDAQIEEYYQFNIANYRTEAQRRVSHILIESGDDTAAAEAKIAEVQAK 297 Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 L G+ F +LA+ E G L I++G D + +++ +L GD + Sbjct: 298 LNAGEDFAELAKTYSDDTFSAENGGDLEFITIGDL------DPAFDEAVLALENVGDVSD 351 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399 ++ FG+ + +++ P+ F +VK +IA +++ A+E + + E + Sbjct: 352 IVATDFGFHLITLTDFTPAEVTPFVDVKDEIAEAVKLEIATEAFFVQQQTMAELAFEVPD 411 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDV----KGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 ++++++ + PL F+ +V V A + + + D Sbjct: 412 TLEDVASAVDKAIVKTPL--FSASNVPPALNNSAVLANAFSAEFIEENMNSD-------V 462 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + L D + ++I + P R R LEEV V T K+ E + NQ++ S+E Sbjct: 463 IELNDEHVLVMRIAQYEPQRTRSLEEVKEQVVTALTTQKSQEAALAYVNQVIAASSEEQA 522 Query: 516 NF 517 N Sbjct: 523 NL 524 >gi|194364618|ref|YP_002027228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia R551-3] gi|194347422|gb|ACF50545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia R551-3] Length = 651 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 128/577 (22%), Positives = 221/577 (38%), Gaps = 85/577 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+ + L +L +PFL + ++ G+ V V + S + W Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILD------NLVSGATLDQFI------ 103 Q + +Q ER R + D N A LDQ I Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESNESKMAVLDQLIDEQVVR 119 Query: 104 ---EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 E G+ G V I P F + KF+ + + RLA G N + +++ Sbjct: 120 LVGEQAGVVIGDGAVREYITTIPAFLDSNGKFNENNY--RLALAGGNPPRTPTQFQELVR 177 Query: 161 RTDVVGMFVGGMRPSNLLLDQAK-----RFYFENRSVDYIVLNNRHVPAIADP-SNAVLT 214 + + G++ S + QA+ + E R V+ L VPA P ++A + Sbjct: 178 ESLQQSVIPSGLQNSGFVT-QAETERLLKLLGETRDVELAALP--EVPADTAPVTDAQIK 234 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 QW++ + ++R E + Y+ + L+ YE K K+ SPE R Sbjct: 235 QWYDSHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEKAKFTSPEQRQASH 294 Query: 275 LVFPN-------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 ++ K A F +L K ++EQG L + G+ K + Sbjct: 295 ILLTGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKEQGGDLGWVERGAMVKPF-- 352 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D++F+ AK GD + FGY I V+ ++ SF+EV R T A+ Sbjct: 353 ----EDALFA-AKAGDVIGPVKTDFGYHIIKVAAVRGGEGKSFEEV--------RDTLAA 399 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAGKDVKGKEVAAIPYK 436 E++K D +R LA G +D I++ ++ ++LPL + + I Sbjct: 400 EQLKADGERGFNELA-GRLVDAINKSPSDLAAAAKEVNLPLQTLG--PITRATASGIATD 456 Query: 437 EQLLFRVFGKDDPLSKDHTVALP------DGSYMWVQIKESIPAR----DRKLEEVLTDV 486 +L F D L +D T + P + +++ P + D+ E+V+ + Sbjct: 457 PAVLRAAF--SDVLVQDGTASDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAI 514 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + D + + S KA VL K G + + + Sbjct: 515 RADRQ-----RQASDKAADAVLAKLKAGATLQSLAAS 546 >gi|270156946|ref|ZP_06185603.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella longbeachae D-4968] gi|289164629|ref|YP_003454767.1| peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae NSW150] gi|269988971|gb|EEZ95225.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella longbeachae D-4968] gi|288857802|emb|CBJ11647.1| putative peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae NSW150] Length = 624 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/411 (19%), Positives = 168/411 (40%), Gaps = 26/411 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ L S ++ V V + +F S+ Sbjct: 1 MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYLQSRQTTNAKVVVNDFPLTLQAFDTSY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ M Q + + ++ + L ++LD +++ L Q G + I Sbjct: 61 RRARAM--QDLSQLTAADEKK---LQNQVLDQMINNEVLVQAARKNGFNVSADQANAAIL 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D FS + L + + + + + F+G S L D Sbjct: 116 SIPQFQ-EDGHFSAQKYQQALNAALFTQSSFQNEVKQGMLLNQQRFAFMGS---SFALPD 171 Query: 181 QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + RF Y ++R +Y+++ S +T ++ K+K + APE + Y+ Sbjct: 172 EIDRFVSLYMQSRDYEYLIVPVSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNL 231 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295 +H+ + K+ +S+D+++ YE+N+ Y +P V ++F P DE + K Sbjct: 232 SMHDIKDKVNVSDDDVKRYYEENQNNYLTPARWHVAHILFAVPQGANKDELEKIQNKANS 291 Query: 296 FIQLAEEQGKS-------LSDISLGSFSKEYIPDVSLADSIFS-----LAKKGDFTPVIH 343 L ++ K +SD L +P ++ + +S L G + Sbjct: 292 TYLLLQKDPKQFDHLVSKMSDDKLSVADNGVLPWIAAGQNEYSKLLSHLTTPGQISSPEK 351 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GY I + + KP T EV+ I Q+ + A + + ++L + Sbjct: 352 TKHGYEIFKLIDYKPVSTKPLSEVEASIKEQLVVEMAQTQYTQAMEQLSDL 402 >gi|87121304|ref|ZP_01077194.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp. MED121] gi|86163461|gb|EAQ64736.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp. MED121] Length = 611 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 107/524 (20%), Positives = 218/524 (41%), Gaps = 31/524 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ V KI + + V F ++G+ + + S TV V ++ + + S Sbjct: 1 MLQDIRDKSQGIVVKIIIGFIVVTFALFGVDALVTGFTTSDTVAEVDGVEITRTELLQSA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G ++ L ++ LD L+ A L D+ L +V + Sbjct: 61 EIQRRQLISMMGGQIDPALLEDTLLQRRALDELIQRAVLTNNANDLNLAVSDAQVDQYLI 120 Query: 121 RSPLFH--GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 ++ F G+ ++ + F+ L + K+ I +L + + + SN + Sbjct: 121 QAEQFQTDGQFDQTKYLNFIRTLGYTPLAFKQRIKQ--DILLQQGRIALSSSEFVLSNQV 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 DQ + + RS DYI + A+ S+ + +F++ +++ PE ++ Y++ Sbjct: 179 -DQVLKLQNQQRSYDYIRYSLADEVALTQVSDTEIQAYFDENTQSFQNPEQVKLDYVIIS 237 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292 + K+ +S+ EL+ Y+ E R L+ N + +DE ++L + Sbjct: 238 SVDFHDKVNVSSAELEQAYQAATSTAPKEERRASHILIEANDQRSDEEARALAQDIKSKI 297 Query: 293 --GKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G KF LA++ L + G S +P+ + +FS+ + V+ Sbjct: 298 DSGTKFEALAKQYSDDLGSKAAGGDLGYVSSGMMVPE--FENVLFSMVVD-QVSGVVETE 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FGY + + I T S E++ ++ ++ KA + + E+ L + D+++ Sbjct: 355 FGYHLIELREITNVDTPSLAEMEPELTQEILDRKAQDAL---LSAQEDITDLAYASDDLN 411 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK---DDPLSKDHTVALPDGS 462 ++++ D+ G+ G+E+ I Q + F +D L+ + L + Sbjct: 412 ALATEYNVNIMHSDWFGRQ-GGQEL--ISSNAQAIAAAFSPELLEDSLNS-GLLELNEEQ 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 V+I E P + LEE DV++ K + KA Q+ Sbjct: 468 VAIVRINEHKPQSNMSLEEASADVQEILLKRKATASLKQKAAQM 511 >gi|152990776|ref|YP_001356498.1| hypothetical protein NIS_1031 [Nitratiruptor sp. SB155-2] gi|151422637|dbj|BAF70141.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 490 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/387 (22%), Positives = 166/387 (42%), Gaps = 34/387 (8%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V F+ WG A S S V VG +K+ F + ++ + Sbjct: 17 WISTIAFV--GAGFVGWG---AYKYGSASDAVAEVGNEKITLKEFQQRYANVYNYYNKML 71 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 ++ E+A+ +GLDK +L+ L+ A L+ + D+GL V +IA +F ++ Sbjct: 72 QGKLDQEQAKKMGLDKMVLNELIQEALLENYAHDLGLIVTDEEVAQKIASMKVF-WQNGH 130 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F ++ L + I K++ K L + + +P L D F Sbjct: 131 FEKSLYNKLLQQNRIKPKDFEQSIRKELLLNKLHQALLYS-KPLQLEFDTMASALFMGDK 189 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKKIEISN 250 ++Y VL ++ + + L ++++K+K+ Y+ AP+Y +S I + K ++S Sbjct: 190 IEYTVLTDKDIDVTV--TRTELKKYYDKHKNEYKTAPKYD-LSIIEMPI----KHFKVSE 242 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-------KKGKKFIQLAEEQ 303 +EL++ Y++N+ KY + + P K + L + KK+IQ + + Sbjct: 243 EELKSYYKQNRLKY-----KDANGKILPFDKAKKQVMHDLDIKKSKKEALKKYIQFKKGK 297 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 ++ + + + + + L I ++ P++ YVI V+ P + Sbjct: 298 LQAQKHLIVAQNNTSF--PLPLMQKIAQASQNSVLKPILVED-RYVIVKVNKKIPPLPMP 354 Query: 364 FQ----EVKKDIANQMRITKASEKVKE 386 F+ EVKKD+ Q R EK K+ Sbjct: 355 FEKAVTEVKKDLLQQKRYQLLLEKAKK 381 >gi|253996686|ref|YP_003048750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] gi|253983365|gb|ACT48223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] Length = 632 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 91/403 (22%), Positives = 168/403 (41%), Gaps = 35/403 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ WV K L + VPF ++G+ L ++ + V ++ ++ N+ Sbjct: 1 MLDGIRSVAKGWVGKAILAFITVPFALFGIDSYLSQAGNNAAIAKVDGSEISVQAYANAM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKK-----ILDNLVSGATLDQFIEDIGLEADHGRV 115 Q L Q G +A LD +LD L++ L++ I+ + ++ Sbjct: 61 -QNLRSRMQAEG------KADQAQLDNPEVKAMVLDQLINEQLLEKEIQRANYKISDAQL 113 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY-IDHYTKMLSRTDVVGMFVGGMRP 174 I P F KD KFS +++ L + K++ + +L++ G+ G Sbjct: 114 ATYITAMPSFQ-KDGKFSQELYDELLQQNRYTPKKFEAEIRATLLAQQAQDGIAKLGF-I 171 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 S D+ + + R V L + S + +++K+KD R PE +I + Sbjct: 172 STARADKTLKLLNQKRVVTVSELKTKDYLDQVKVSPEEVKAYYDKHKDKLRDPEQVKIEF 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQK-EADEA 286 +L I++ + E++ Y++N K+ E R ++ P QK EA Sbjct: 232 LLLSASSLVPGIKVDDAEVKRYYDENSAKFKGNEQRRASHILIGFGVNATPEQKQEAKNK 291 Query: 287 FQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 Q+L K K F +LA ++ G + LGSF + + ++ F + K + Sbjct: 292 AQALLDTIKKNPKSFEELAIKNSQDPGSATKGGDLGSFGRGAMVK-PFEEAAFKM-KVNE 349 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + ++ FGY I V+ I + F+ +K I + KA Sbjct: 350 VSDLVESEFGYHIIKVTEITGQGS-DFESLKAQIKGDLIFQKA 391 >gi|121613493|ref|YP_001000390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005333|ref|ZP_02271091.1| hypothetical protein Cjejjejuni_03670 [Campylobacter jejuni subsp. jejuni 81-176] gi|87249349|gb|EAQ72309.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni subsp. jejuni 81-176] Length = 496 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 155/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + ++++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWDEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|295676521|ref|YP_003605045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] gi|295436364|gb|ADG15534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] Length = 644 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/404 (20%), Positives = 166/404 (41%), Gaps = 25/404 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + + LV+L P L + G+ S+ V SV K+ + ++ Sbjct: 1 MLDFFRNHQRLMMFMLILVIL--PGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDDA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G + + + +++LD ++ L + + L A V + Sbjct: 59 MRQQIDRGRQMLGAQFDMKAFDTPERRREMLDGMIEQRVLADETQRLHLTASDDAVRRAL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D + + LA +G+ +Y + L+ + S Sbjct: 119 LSDPVISSLKNPDGSIDLERYKQLLAMQGMTPDQYDERMRYNLAMQQLPASIAASAFTSK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + R V I + A P++A L +++ +++++ P I Y++ Sbjct: 179 TLAQHLSELAQQQREVQGIAFHPHDYEAKIQPTDAQLQAYYDAHRNDFATPATAAIQYVV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEA-----------D 284 ++ S+ +L+ Y+ N + + E+R L+ + + + Sbjct: 239 MSPATLGASVQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASTADKAKAKQKAE 298 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSDIS----LGSFSKEYIPD-VSLADSIFSLAKKGDF 338 E LK +F Q+A++ + S LG F + I + D++F+L KK + Sbjct: 299 ELLAQLKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEI 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + ++ FG+ I V+ +KP+ T SF EVK IA +++ AS+ Sbjct: 358 SGIVQTDFGFHIIKVTEVKPAVTKSFDEVKDQIAKEVKTQLASK 401 >gi|190150329|ref|YP_001968854.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263670|ref|ZP_07545279.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915460|gb|ACE61712.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870983|gb|EFN02718.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 625 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/395 (20%), Positives = 165/395 (41%), Gaps = 36/395 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAR 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231 + +Q + L N + A A L ++++ +K PE Sbjct: 172 EFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLT 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y+ + +++++++++ YEKNK Y + + N+ +A + +K Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341 G F +LA+ QG L G+F K + SL D G + V Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ Y I V K + ++VK I +R Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378 >gi|261380152|ref|ZP_05984725.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava NJ9703] gi|284796990|gb|EFC52337.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava NJ9703] Length = 617 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 93/401 (23%), Positives = 172/401 (42%), Gaps = 48/401 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAG- 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N+ +R + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 64 --NNAPSRDA-----VFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236 Query: 254 QAEYEKNKEKYFSP--EIRTVEQLVFPNQKEA---------DEAFQSLKKGK-KFIQLAE 301 Q Y+ +K SP EI + V PN EA D+ LK+ F +LA Sbjct: 237 QKAYD-SKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKEHPDSFAELAA 295 Query: 302 EQGKSLSDI----SLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + K LS +LG SK + P+ A F+L KG+ + + S GY + V Sbjct: 296 KYSKDLSSSNKGGNLGYLSKGGGSGFGPEFDKA--AFALG-KGEVSDTVKSSLGYHVIKV 352 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKAS-------EKVKED 387 N++ T ++ K I +++ KA+ EK+ ED Sbjct: 353 LNVEAEPT--LEQAKARIEAALKLKKAASAFNAAKEKLGED 391 >gi|307250251|ref|ZP_07532205.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857692|gb|EFM89794.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 625 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/395 (20%), Positives = 165/395 (41%), Gaps = 36/395 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231 + +Q + L N + A A L ++++ +K PE Sbjct: 172 EFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLT 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y+ + +++++++++ YEKNK Y + + N+ +A + +K Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341 G F +LA+ QG L G+F K + SL D G + V Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ Y I V K + ++VK I +R Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378 >gi|319943847|ref|ZP_08018128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] gi|319743080|gb|EFV95486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] Length = 649 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 133/575 (23%), Positives = 231/575 (40%), Gaps = 62/575 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFI 57 M + +R R +A+ L+VL +P F+ +G+S D +F +V SV + VP + F Sbjct: 1 MFDFVRTHQR--LAQGLLLVLIMPAFVFFGISGYDRMFG--DGDSVASVDGEPVPRAYFE 56 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQFIEDIGLEADHGRVW 116 +++Q++ + Q +G D + DN + L+ I L AD R Sbjct: 57 QTYRQQVQQMQQMMGD----------NYDAAVFDNQATRMEVLENLITRQALLADARRAR 106 Query: 117 -----GEIARSPLFHGKD-----NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 GEI ++ L D KF + + LA G+ +Y +ML+ V Sbjct: 107 ITVTPGEIQKAILDQHADLRDANGKFDIEGYKRLLAANGLTPAQYEAQMGQMLAVGAVER 166 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 ++D R V +++ R P++ L +++ + + Sbjct: 167 AVADSAMVPQTVVDGVFASQENRRVVRTLLVTPRDYEKGLAPTDEQLKAYYDAHASAFDL 226 Query: 227 PEYKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 PE ISY+ L K +E S EL+A Y+K++ ++ E R ++ + AD Sbjct: 227 PESVDISYVALRRTDMLPKDVEPSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADA 286 Query: 286 AFQSLKKGK-------------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADS 328 A + K + KF +LA E+ G + LG F ++ + AD+ Sbjct: 287 AAKEKVKARAEALLAEAKAHPDKFAELAKKNSEDPGSAEQGGDLGFFERDTMVK-PFADA 345 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F L K G FT V+ +G+ + V+ +K EVK + R +A+ + Y Sbjct: 346 AFGLDKPG-FTDVVETEYGFHVIQVTGVKGGGEKPLAEVKPQLVKMWREEEAARR----Y 400 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-----YKEQLLFRV 443 + E AL + E + K + L K V K A P +LL ++ Sbjct: 401 NQAAE--ALSNMVYEQAESLKPAAERFKLNIEQAKGVGRKPAANAPEGSPLANARLLEQL 458 Query: 444 FGKDDPLSKDHTVAL--PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + D K +T A+ G + ++ P R + L+EV V++ W A ++ Sbjct: 459 YAPDALEEKRNTTAIEVSPGVLVSARVDAHHPQRRQTLDEVKDTVRQRW-IADEAARLAR 517 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 +A + L +E +D L + L N I+R Sbjct: 518 EAGEKRLAELREAAGAKDAKAALPSGLSEENTISR 552 >gi|301060821|ref|ZP_07201635.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] gi|300445070|gb|EFK09021.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] Length = 635 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 85/411 (20%), Positives = 169/411 (41%), Gaps = 69/411 (16%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 +L ++RK +++W+ K + ++ + F+ + G S F+ + V V + + + + Sbjct: 2 LLSLMRKHAKSWLIKALIAIIAIVFVFYFGYS---FTSDKAMKVAYVNGELINGPEYEKA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ L + + N + L ++ LD+L++ + Q ++GL + I Sbjct: 59 YRDMLMSFQARYKDMWNDNLLKIFNLKQRALDSLITQRLMSQAATELGLAVTEEEIQKAI 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F IN + + Y +LS + S LL Sbjct: 119 MTYPAFQ-------------------INGQFDMRRYQALLSANHMKPEDFEASITSELLD 159 Query: 180 DQAKRFYF------ENRSVDYIVLNNRHVP-------------AIADPSNAVLTQWFEKY 220 + K+F F + ++Y N V ++ A L ++FEK Sbjct: 160 QKLKQFLFAFLNITDQEILEYYTFANEKVKIGFVEFKPEDFKKSVTIEDKAKLKEYFEKN 219 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277 K++YR PE + Y+ D + E ++E++ E+Q+ YE N ++Y P+ ++F Sbjct: 220 KESYRVPEKIAVRYLEIDPKDFEGEVEVTEKEIQSYYEYNSDRYSQPKQVKARHILFKFN 279 Query: 278 ---------PNQKEADEAFQSLKKGKKFIQLAEE--------QGKSLSDISLGSFSKEYI 320 +K+A++ + +KG+ F LA++ +G L G K + Sbjct: 280 KDDSEEVKNTVKKKAEKVLEKARKGEDFASLAKKYSEGPTKSKGGDLGYFKTGEMEKPF- 338 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 ++ F+L KKG+ + ++ FGY I V +IK + + VK +I Sbjct: 339 -----EEAAFAL-KKGEISDLVQTRFGYHIILVEDIKEAGIKPLENVKGEI 383 >gi|29654742|ref|NP_820434.1| hypothetical protein CBU_1451 [Coxiella burnetii RSA 493] gi|29542010|gb|AAO90948.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493] Length = 522 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 104/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y+++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280 PE I+Y+L +++ +S+ E++ YE N+E K F+ ++Q + + Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284 Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329 K++D+ ++ A Q + +L FS+E I + +D + Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAVNPKIVAAAFSDDV 343 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 D + GS VI V + +PS + + V I +Q++ A K Sbjct: 344 LQGGNNSDVIELKDGSL--VILRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 ++ + G S++ I++ + + V K + +A+ F + P Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449 Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481 L KDH T L +G VQ+ PA + + E Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484 >gi|170720931|ref|YP_001748619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida W619] gi|169758934|gb|ACA72250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida W619] Length = 623 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 86/406 (21%), Positives = 172/406 (42%), Gaps = 20/406 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + S S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAASHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L L L+ L Q +D + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKLLRDAALKGLIERKLLLQGAKDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + G ++ +ML+ ++G G+ S+ + D Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMGYGRLQF----REMLAEEMLIGQVRTGIAGSSFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + EN++ D+ L + PA S+ + +E++ + P+ I Y+ Sbjct: 176 QQVDAFARLENQTRDFASLTFKANPAAVKVSDDEVKAHYEQHAKEFMTPDQVVIDYVELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKN-----KEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLK 291 ++++++DEL+A+YEK ++++ + + V V Q +A +E Q L Sbjct: 236 KSAFFDQVKVTDDELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARIEEVEQRLA 295 Query: 292 KGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+ F +LA+E G + S LG F+ + D D+++ L G + + FG Sbjct: 296 KGEDFAKLAKEFSQDPGSANSGGDLG-FAGPGVYDPVFEDALYKL-DDGQVSAPVRTQFG 353 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 Y + + + SF +K + ++ ++ + K+L++ Sbjct: 354 YHLIKLLGKQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQD 399 >gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Methylibium petroleiphilum PM1] gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Methylibium petroleiphilum PM1] Length = 640 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/428 (20%), Positives = 175/428 (40%), Gaps = 70/428 (16%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E +R S T + + LV+L P F+ +G+ G++ V V + + + + Sbjct: 1 MFEFVR--SHTRLLQFILVLLVFPAFVFFGVQGYTGMSEGNAVVAKVAGTSITQAEWDAA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNL-VSGATLDQFIED---------IGLE 109 + + V RA+S G+D K+ D TLD + + + L Sbjct: 59 HRNQ-----------VERLRAQSPGVDLKLFDTPEAKQRTLDALVRERVMLVAADKLHLT 107 Query: 110 ADHGRVWGEIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV- 165 A R+ A P D + DV LA +G++ +++ + L+ V+ Sbjct: 108 ASDERLQRVFASDPQLAFLRKPDGSLNADV----LAAQGMSARQFEQQLRQDLAMRQVLQ 163 Query: 166 ---GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE--KY 220 G + RP++ LD + R V + + ++A + +++ ++ Sbjct: 164 GVSGTVLAPSRPTSTALDA----LLQQREVRIARFEAQKFVTKVNVTDADIEAYYKDGRH 219 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + PE I Y++ D+ + + +S+D+L+ Y +N+ +Y +PE R ++ + Sbjct: 220 AAEFETPEQASIEYLVLDLDAIKSGLTVSDDDLRKYYAENESRYVAPEERRASHILIKAE 279 Query: 281 KEADEA-------------FQSLKKGKKFIQLAEE---------QGKSLSDISLGSFSKE 318 K A ++ K KF +LA++ QG L + G+ K Sbjct: 280 KGASAEQREKARTKAATLLAEARKDPAKFAELAKKNSEDPGSAVQGGDLDFFARGAMVKP 339 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + D+ F+L K G + V+ FGY + ++ ++ +F+ VK +I N+++ Sbjct: 340 F------EDAAFAL-KPGQLSEVVESDFGYHVILLTAVRGGEKKAFESVKAEIENEVKQQ 392 Query: 379 KASEKVKE 386 A + E Sbjct: 393 LAQRRYAE 400 >gi|57236997|ref|YP_178798.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter jejuni RM1221] gi|57165801|gb|AAW34580.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni RM1221] gi|315058157|gb|ADT72486.1| Peptidyl-prolyl cis-trans isomerase ppiD [Campylobacter jejuni subsp. jejuni S3] Length = 496 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 79/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + S AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|303251064|ref|ZP_07337250.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252639|ref|ZP_07534532.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650074|gb|EFL80244.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859884|gb|EFM91904.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 625 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 83/396 (20%), Positives = 168/396 (42%), Gaps = 38/396 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171 Query: 176 NL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKR 231 + +Q + L N + A A L ++++ +K PE Sbjct: 172 EFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLM 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL 290 + Y+ + +++++++++ YEKNK Y + E R+ + N+ +A + + Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRSA-HIQLANETDAKAVAEQV 290 Query: 291 KKGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTP 340 K G F +LA+ QG L G+F K + SL D G + Sbjct: 291 KNGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSA 342 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 V++ Y I V K + ++VK I +R Sbjct: 343 VVNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378 >gi|86153477|ref|ZP_01071681.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843203|gb|EAQ60414.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 496 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|332701510|ref|ZP_08421598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio africanus str. Walvis Bay] gi|332551659|gb|EGJ48703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio africanus str. Walvis Bay] Length = 631 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 118/544 (21%), Positives = 217/544 (39%), Gaps = 71/544 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ +R+W KI ++ + F+ WG+ F S V V V + + Sbjct: 1 MLDPIRQNARSWGVKIVFGIIIIVFVFWGVGS--FRNQNGSVVGYVNDTPV----NVTEY 54 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q L ++++ +++E + +GL +++ +V + Q +D G+ V Sbjct: 55 RQALERATEQLRSRFPDLDAEMLKQLGLRRQVFSQIVDAELVRQKAKDTGMVVSDEEVRE 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F F ++++ L G+ E Y GMR + L Sbjct: 115 IIRSTPAFQSDRGGFDYELYRRLLRANGLTEVSY-----------------EAGMR-TEL 156 Query: 178 LLDQAKR------------------FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 LLD+ ++ F + V Y + A A PS + ++E+ Sbjct: 157 LLDKMRQVATLPAKASEQEARDHFAFARDTAVVRYALFPLEDFTAQASPSEEEIAGYYEQ 216 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVF- 277 K + P RISY+LF + + ++ +E++ YE + +K+ E+R LV Sbjct: 217 NKARFTLPAQARISYLLFSAEQMARPEQVPAEEVRQYYEAHADKFQRQEEVRASHILVKV 276 Query: 278 ---PNQKEADEAFQSLKKGKK-------FIQLAEEQGKSLSDIS---LGSFSK-EYIPDV 323 Q+E D A ++ +K F A++ + S + LG F + +P Sbjct: 277 AKDAPQEEVDTAKAKIEDIRKKITGSLSFADAAKKFSEGPSGPAGGDLGWFGRGRMVP-- 334 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + + F+L K G + + FG+ I + + + EV+ DI ++ A+ Sbjct: 335 TFEQAAFAL-KPGQVSAPVRTEFGWHIIKLEERREPGQIPLAEVESDIRAELARDTAASL 393 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 V + E A G S+ EI++ +V D +G + A I ++ + Sbjct: 394 VGDALDEATELAAAGQSLAEIAKSLHMVPRD------SGMFSESAGPAGIGLNDEAKRVI 447 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 F D D V+ +G Y+ + S P + L+EV ++ K K E +KA Sbjct: 448 FSLADGELTDTPVSSGNG-YILAEKAGSKPESVKPLDEVRVQIETLLKRDKALELSKAKA 506 Query: 504 NQLV 507 L Sbjct: 507 QALA 510 >gi|86151641|ref|ZP_01069855.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841270|gb|EAQ58518.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 496 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|161830280|ref|YP_001597297.1| hypothetical protein COXBURSA331_A1623 [Coxiella burnetii RSA 331] gi|161762147|gb|ABX77789.1| conserved hypothetical protein [Coxiella burnetii RSA 331] Length = 522 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y+++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280 PE I+Y+L +++ +S+ E++ YE N+E K F+ ++Q + + Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284 Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329 K++D+ ++ A Q + +L FS+E I + +D + Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAVNPKIVAAAFSDDV 343 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 D + GS V+ V + +PS + + V I +Q++ A K Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 ++ + G S++ I++ + + V K + +A+ F + P Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449 Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481 L KDH T L +G VQ+ PA + + E Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484 >gi|148926659|ref|ZP_01810340.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845178|gb|EDK22273.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 496 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 79/364 (21%), Positives = 153/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEAITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + S AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|315124196|ref|YP_004066200.1| hypothetical protein ICDCCJ07001_630 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017918|gb|ADT66011.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 454 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|205355536|ref|ZP_03222307.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346770|gb|EDZ33402.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 496 Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|212703745|ref|ZP_03311873.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098] gi|212672827|gb|EEB33310.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098] Length = 650 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 79/409 (19%), Positives = 164/409 (40%), Gaps = 36/409 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 ML+ IR ++++ K+ ++ + F+ WG+ + GSS VV+ V + + F + Sbjct: 1 MLDYIRSNAQSFGVKVAFAIIILVFMFWGVGS--LTDGGSSNVVAKVNGEAITAQQFEQA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + Q + + + E L +++L+ L+S + Q +G+ + + Sbjct: 59 Y-QRAAEYAMRNDPSLTREALVQQKLGRQVLNELISAQLIRQEAARVGMTVSPEEMHYVV 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++ P F KF + + + + ++ EY + R V+ G + Sbjct: 118 SKLPAFQDAQGKFDPEAYKRAIEAQRMSVAEYEQGLADSILRDKVMRTVAGSAWAAG--- 174 Query: 180 DQAKRFY---FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +A+++Y + R+V+Y+ L A P+ L W+E +K + + Y+ Sbjct: 175 GEARKYYDFLTQQRAVEYLYLPAADFAASVKPTEEELGAWYEAHKAELASQPRVEVEYVA 234 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGK 294 + +S + YE NK+++ PE V ++ P + A EA Q+++K Sbjct: 235 VAPESLVRPESVSAEAALKWYEANKQRFRQPEQVKVAHILVPLAENAPEAAVKQAMEKAA 294 Query: 295 KFIQLAEE-----------------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + AE+ G L I G K + D+ ++L + G Sbjct: 295 RIRSEAEKGDFAAVADANNGPNAAGPGGELGWIQRGQTVKPF------EDAAWAL-QPGQ 347 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + + FG I + + K + F EV+ ++ + + EKV + Sbjct: 348 ISEPVRSQFGLHIIKMEDRKDASVQPFAEVEAEVRATLAKQEGVEKVND 396 >gi|153951630|ref|YP_001398361.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939076|gb|ABS43817.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter jejuni subsp. doylei 269.97] Length = 496 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y ++ + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVTTDKLNQIFNIPSKDEELKMLASSYFMQDVLS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K+NY+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKENYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK G + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGGVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|86149807|ref|ZP_01068036.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596914|ref|ZP_01100150.1| putative peptidyl-prolyl cis-trans isomerase D homolog [Campylobacter jejuni subsp. jejuni 84-25] gi|218562333|ref|YP_002344112.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839625|gb|EAQ56885.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190603|gb|EAQ94576.1| putative peptidyl-prolyl cis-trans isomerase D homolog [Campylobacter jejuni subsp. jejuni 84-25] gi|112360039|emb|CAL34831.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925950|gb|ADC28302.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315929133|gb|EFV08360.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 305] Length = 496 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 155/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + ++ ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|283956103|ref|ZP_06373590.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 1336] gi|283792423|gb|EFC31205.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 1336] Length = 496 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|315926808|gb|EFV06182.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 496 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVIADKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLPVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|165919397|ref|ZP_02219463.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|165916913|gb|EDR35517.1| conserved hypothetical protein [Coxiella burnetii RSA 334] Length = 522 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y+++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280 PE I+Y+L +++ +S+ E++ YE N+E K F+ ++Q + + Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284 Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329 K++D+ ++ A Q + +L FS+E I + +D + Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAANPKIVAAAFSDDV 343 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 D + GS V+ V + +PS + + V I +Q++ A K Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 ++ + G S++ I++ + + V K + +A+ F + P Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449 Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481 L KDH T L +G VQ+ PA + + E Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484 >gi|229591358|ref|YP_002873477.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25] gi|229363224|emb|CAY50307.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25] Length = 624 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 84/408 (20%), Positives = 178/408 (43%), Gaps = 23/408 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58 ML+ IR S+ W+AK + ++ G+ +A+F SG+S V V +++ + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGI-EAIFQASGNSKQDVAKVNGEEITQTELSQ 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + + Q++G ++ L + L +L+ L Q D + Sbjct: 60 AVDMQRRQLMQQLGKDFDASLLDEKLLREAALKSLIDRKLLLQGAADSKFGFSEAALDQV 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I ++P F D KF+ + F + + G + ++ +ML++ ++G G+ S + Sbjct: 120 ILQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQF----RQMLTQEMLIGQVRAGIAGSGFV 174 Query: 179 LDQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 D + E ++ D+ +N + PA ++ + +++++ + P+ I Y+ Sbjct: 175 TDSEVLAFARLEKQTRDFATVNIKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLE 234 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------EAFQS 289 ++ + +DELQA Y+K + + R L+ N K D E Q+ Sbjct: 235 LKKSSFFDQVAVKDDELQAAYQKETAN-LAEQRRAAHILIEVNDKVTDAQAKAKIEEIQA 293 Query: 290 -LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L KG+KF LA+E + S G F+ + D ++++L+K PV + Sbjct: 294 RLAKGEKFEALAKEFSQDPGSASNGGDLGFAGPGVYDPDFETALYALSKDQVSAPV-RST 352 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG+ + + ++ +F +K + +++ + ++ E K+LE+ Sbjct: 353 FGWHLIKLLGVEAPQVPTFASLKDKLTKELKTQQVEQRFVEATKQLED 400 >gi|262372262|ref|ZP_06065541.1| ppic-type ppiase domain-containing protein [Acinetobacter junii SH205] gi|262312287|gb|EEY93372.1| ppic-type ppiase domain-containing protein [Acinetobacter junii SH205] Length = 623 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 113/530 (21%), Positives = 215/530 (40%), Gaps = 53/530 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSW 60 +E R + W+ K+ LV+ P + G+ + FS + V SV Q + + Sbjct: 1 MESFRTLIKGWLGKVLLVLFLTPLALVGI-EGYFSGGNKADVAKSVNGQDISNKELETAT 59 Query: 61 KQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K Q + V E ++ L +K LD L++ + L Q E +G+ ++ + Sbjct: 60 K---NYKDQYLSLVKGDESLLNLSLIQEKALDALIARSLLQQQAEKLGISLSDTQLEQML 116 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMRP 174 A+ P F ++ +FS ++ + L G+ + I DH KM+S T + V Sbjct: 117 AQQPSFQ-ENGQFSQKLYENYLRSVGMTNQGLIASLRQDHALKMISSTLMDYALV----- 170 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 S L Q E R++ + SN + ++ K+K+ ++ + Y Sbjct: 171 SKSDLQQLANLQTEQRTLHLASIKLDDYKKGITVSNQEIADYYNKHKNQFKQVANVDVDY 230 Query: 235 I-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADE 285 + L + + S ELQ Y+ +K R V+ ++ QK A++ Sbjct: 231 VVLTPALLPQANVAPSEAELQQAYKAFVDKQQKDVKREVKHILITTDSRDAATAQKLAND 290 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVI 342 + ++ G F A + + S + G + Y P V D ++ SL K G + + Sbjct: 291 VYAKIQSGMSFADAAAQFSEDPSSKTQGGLVEAYAPGVFSTDFDNAVNSL-KNGQISKPV 349 Query: 343 HGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 +GY I ++ P+ + S++ K + +++ TK + + L E + S+ Sbjct: 350 KTQYGYHI--IAANAPAIDIPSYEAEKPRLIAEVQKTKQANLFSDTVNSLNEMVVGNDSL 407 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAI-PYKEQL-----LFRVFGKDDPLSKDHT 455 D +++ K V ++ KG + PY L LF K+ + + Sbjct: 408 DAVAQEVKGVRVE---------SAKGVTLTTQNPYLSDLNVKAKLFNDDVKNGDRNASSS 458 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + L +G +W+++++ A + L + T+VK K EE + KA Q Sbjct: 459 IQLANGDVIWIKVRDYRAAGVKTLAQATTEVK-----AKVIEEKAYKAAQ 503 >gi|73541077|ref|YP_295597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] gi|72118490|gb|AAZ60753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] Length = 649 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 113/556 (20%), Positives = 223/556 (40%), Gaps = 52/556 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R +R + + LV++F F+ +G+ + S V V + + N Sbjct: 1 MLDFVRN-NRRLMLLLLLVLVFPSFVFFGVESYSRFMDSSHDVAKVDGRAITVQEVDNVV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + L K + D L+ + + L + R++ I Sbjct: 60 REQSERMRQMLGASYDPRQFEGPMLRKNVTDQLILQRVVANEVAREHLTVSNARLYEAIN 119 Query: 121 RSP----LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR--P 174 P L +D +V LA +G+ +++ D + T +G + G P Sbjct: 120 SIPAIAQLPRKQDGSVDDKAYVQLLAAQGMTPEQF-DARMRFDLATQQLGTSIAGTAFVP 178 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 +LL D+ + R V ++ + P A L ++E ++ + PE ++ Y Sbjct: 179 KSLL-DRLIAVRDQQRDVQALLFKPADYASKVQPDAAALKAYYESHQSAFSVPEQAKVEY 237 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ +S +EL++ Y+ N ++ + E R ++ K+ A + K K Sbjct: 238 VVLSGDALAASQAVSPEELKSYYDSNIARFRTEEQRRASHILIAAPKDGPAAARQAAKDK 297 Query: 295 KFIQLAE----------------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 L E E+G L + G+ K + D++++L Sbjct: 298 AGKLLEELRKHPDTFADVARKQSQDPGSAEKGGDLGFMGHGALVKPF------EDAMYAL 351 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G + V+ +GY I ++ IKPS T V+ ++ ++R A++K ED Sbjct: 352 -KDGQISDVVETDYGYHIIKLTGIKPSETKPLDAVRPELEAELRKQFAAKKYAEDAD--- 407 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI----PYKEQLLFRVFGKDD 448 A G + E + K + L +V + A+ P + + + DD Sbjct: 408 ---AFGNMVYEQADSLKPAADKFKLTIQTADNVTRQPNPALGQNNPLNNEKVLKALFSDD 464 Query: 449 PL-SKDHTVALPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + +K +T A+ G V +I + PA RK EEV V++ + + A E++ K + Sbjct: 465 AIKNKRNTEAVQVGPTTLVAARIVDYRPATVRKFEEVEAKVREGY-IAQQAAELARKDGE 523 Query: 506 LVLEYSKEGKNFRDIG 521 +E K+ + + G Sbjct: 524 ARVEALKKSDSAQGFG 539 >gi|301154695|emb|CBW14158.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus parainfluenzae T3T1] Length = 625 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 91/439 (20%), Positives = 182/439 (41%), Gaps = 35/439 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ++E + + +++ K +L V FLI G+S L+ S V + + F+N + Sbjct: 2 LIEKMHGVAHSFIGKAIFALLPVSFLIGGMSGYLYG-GNESFAAKVNGETISQQDFLNRY 60 Query: 61 KQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE +Q+ G F+ ++ V L + ++ LV + Q+ +++ L + Sbjct: 61 NQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDDMIKR 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P + KF + + L + G+ D Y +L + G+ S Sbjct: 121 AIVSDPNLQS-NGKFDNARYQQLLTQNGLTS----DTYAAILRNALTLEQMQNGLADSEF 175 Query: 178 LL-----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 ++ D A+ F F+ R L A + + +++ + PE ++ Sbjct: 176 VVPAQVKDSAQTF-FQKRIARLATLPLADEVAKQKVTEEEIKAYYDANAKSLVQPEQAKV 234 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 YI +E K ++ ++ Y++NK ++ S ++ ++ +KEAD +Q L+K Sbjct: 235 QYIRVSANELGKLQPVTETQIAQYYQENKAQFISQKLAHIQ---LATEKEADAVYQELQK 291 Query: 293 GKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGS 345 G F +LA + KS+ +S LG +P + D+ L TPV + G+ Sbjct: 292 GADFAELA--KAKSVDKLSGAQGGELGWVKDNELPK-NFEDAALLLNVGQYSTPVNVDGA 348 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + H+ ++ + EVK+ IA+ +R A + + K + A S D ++ Sbjct: 349 Y-----HIILVQDRKERTLDEVKEQIADSVRKNLAGSRFQAVEKAVRAKAA--ESSDSLA 401 Query: 406 RREKIVSIDLPLVDFAGKD 424 + + + D+ GK+ Sbjct: 402 AVAEAAGVKVEETDYFGKN 420 >gi|157414981|ref|YP_001482237.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385945|gb|ABV52260.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747618|gb|ADN90888.1| Peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315931892|gb|EFV10847.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 327] Length = 496 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 22/364 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V FL WG D F+++ SS+V +VG +K+ FS F ++Q L +Q Sbjct: 17 WVSTIAFVG--AGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E A +G+ L +LV L F +D+G+ + + ++A + F Sbjct: 73 NGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGD 132 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ ++ L + K+Y + + +F + L + + F + S Sbjct: 133 FNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIFNIPSKDEELKMLASSYFMQDALS 192 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + I + +++ + L + + ++K++Y+ + IS V ++ I + Sbjct: 193 IAKIDYDKKNIKINEED----LKKLWNEHKEDYKTKKIYEISTYFLSVSNEK----IDDK 244 Query: 252 ELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--GKKFIQLAEEQGKSL 307 EL+ Y ++NK KY + ++ N+ D A LK KF+ L + Sbjct: 245 ELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALIQLKNVANAKFLDLKNGKDNFQ 304 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D ++ DV + + AK GD + GY+I ++ + P +F+E Sbjct: 305 KDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEA 358 Query: 368 KKDI 371 ++++ Sbjct: 359 REEV 362 >gi|149910316|ref|ZP_01898960.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Moritella sp. PE36] gi|149806676|gb|EDM66643.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Moritella sp. PE36] Length = 636 Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 111/535 (20%), Positives = 211/535 (39%), Gaps = 47/535 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE R+ S+ AKI L + V F + G+S L S S +V + + N Sbjct: 1 MLEKFREGSQGPGAKIILGAVIVTFALAGVSSYLGGGSNQS-AATVNGVDISTQALENQV 59 Query: 61 KQELGMISQKIG--FVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + G F V E+ + ++ L+ L++ L Q D+ L ++ G Sbjct: 60 RTDRSRLESQQGESFAVRWEQPEFQNQVRQQSLNTLIAQNLLQQMTNDLALSIGDEKIRG 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F D F+ + ++S L + G+ ++++ ++ + V Sbjct: 120 YIFAMQEFQ-TDGVFNDERYISLLRQNGMTPAQFVERLRVDFAQQQLTDALVNSEFSLPN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + Q + R + +++ A ++A + ++E K ++ P+ + YIL Sbjct: 179 EVKQLAALQNQQRELSQLIVPANKFAADIVVTDAEVNSYYEDSKAFFQTPQQASVDYILV 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 D+ IE+ D + Y ++ Y + R V ++ Q++A + + Sbjct: 239 DMKNISAGIELDADAAENYYNEHLSSYTQEDKRKVAHILVAFNDDESAAQEKAQDLLTQI 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEY----------IPDVSLADSIFSLAKKGDFTP 340 + G F +LA K+ SD +FS E I D + + F+L GD T Sbjct: 299 QSGADFAELA----KTSSD---DTFSGENGGELDWLEKDIMDPAFETAAFALQNDGDVTT 351 Query: 341 -VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALG 398 ++ FG+ I + ++ +F +VK I +++ +A E + L E+ + Sbjct: 352 ELVRSDFGFHIIKLLAVESGKVKAFTDVKTTIETRLKNEQAVSHFDELAETLAEQAFEVP 411 Query: 399 TSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 S+D S IVS +L + + VAA + + + + + Sbjct: 412 DSLDVASEETGLTIVSTELFSANAIPAPLNDPRVAATLFDQDFIAEALNSE-------II 464 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEV-------LTDVKKDWKTVKTAEEVSSKAN 504 + D + V+I E P + L EV LT K + K + VS+K N Sbjct: 465 NISDEQSIVVRINEYKPQTTKALAEVNDEIVARLTATKAEQKALSFMTSVSAKIN 519 >gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] gi|151280222|gb|ABR88632.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 638 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 83/403 (20%), Positives = 163/403 (40%), Gaps = 21/403 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + IR R + + L+V+F F ++GL S+TV V Q + + + Sbjct: 1 MFDFIRTHQR-LMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQ 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ Q G + + + + +LD L++ L + L + I Sbjct: 60 REQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIM 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 D KF + + S LA +G+ Y + L V + L Sbjct: 120 GIAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R V Y+ + ++ +L +++K + + PE + Y++ Sbjct: 180 RLSELGEQEREVQYLTFKAADYASQVKVTDDMLKAYYDK-SNEFSVPEQVKAEYVVLTAD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288 +I +S+ ++++ YE+N ++Y E R ++ K+A A + Sbjct: 239 ALASQINVSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLE 298 Query: 289 SLKKGKK-FIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +L+K + F +LA+E G FSK + D+ F L K+G+ + ++ Sbjct: 299 TLRKSPQDFAKLAKENSNDPGSAERGGDLDFFSKGMMVK-PFEDAAFKL-KQGELSDLVE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +G+ I V+ IKP+ ++VK DIAN +R ++K E Sbjct: 357 SDYGFHIIKVTAIKPATLKPLEQVKGDIANDIRKQLVTKKYAE 399 >gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae SmR1] gi|300074334|gb|ADJ63733.1| peptidyl-prolyl cis-trans isomerase D protein [Herbaspirillum seropedicae SmR1] Length = 639 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 108/511 (21%), Positives = 204/511 (39%), Gaps = 33/511 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFV--PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M + IR R FL++LF+ F +GL + ++ + V V Q + + Sbjct: 1 MFDFIRTHQRLMQ---FLLLLFIFPSFAFFGL-EGYSRLTDDNGVAKVAGQTITKEEWDA 56 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + +Q+L + Q G +S+ S + ILDNL++ L + L + Sbjct: 57 AHRQQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQS 116 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + P D KF ++ + LA +G+ K Y + ++ + + Sbjct: 117 ILQIPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQLNAAIQTTAFAPKTV 176 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + R+V + + S+ +L +++K + PE I Y++ D Sbjct: 177 AENLSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDYYDKNSARFETPEQADIEYVVLD 236 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF----------- 287 + +++D+++A YE+NK+ Y + E R ++ +K+A A Sbjct: 237 AAAVAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGL 296 Query: 288 --QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 Q K +F +LA ++ G + + LG F K + D+ FSL K+G+ + Sbjct: 297 VAQLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVK-PFEDAAFSL-KQGEISDP 354 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTS 400 + FGY I V+ IKP+ + VK +I ++++ A++K E + + G S Sbjct: 355 VQSDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAAKKYSEMADQFNNLVYENGDS 414 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVA 457 + +S + K+ V G +PY DD + H V Sbjct: 415 LKAVSDKLKLKIQTATGVTRTPNPAAG----PLPYNNAKFLTALFTDDVIKAKHNTEAVQ 470 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + + ++ P R +EV DV+K Sbjct: 471 TAPNTLVAGRVTSYKPVTKRPFDEVKADVQK 501 >gi|78066690|ref|YP_369459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] gi|77967435|gb|ABB08815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] Length = 644 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 72/368 (19%), Positives = 147/368 (39%), Gaps = 30/368 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 LS + V L + + R V +VL A P++A L + Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + + V + Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 277 FPNQKEADEAFQSLKKGK-------------KFIQLAEE---------QGKSLSDISLGS 314 A A ++ K K +F Q+A++ +G L I+ GS Sbjct: 279 IAAPGSASAADKTAAKTKAEQLLADVKAHPDQFAQVAQKSSQDAPSAAKGGDLGFITRGS 338 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + D D+ F+L K+GD + V+ G+ I + +KP+ F +VK IA + Sbjct: 339 TAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPAAVKPFADVKDQIAAE 393 Query: 375 MRITKASE 382 ++ AS+ Sbjct: 394 LKQQYASK 401 >gi|154706549|ref|YP_001423952.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway 5J108-111] gi|154355835|gb|ABS77297.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway 5J108-111] Length = 522 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLMSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y+++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280 PE I+Y+L +++ +S+ E++ YE N+E K F+ ++Q + + Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284 Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329 K++D+ ++ A Q + +L FS+E I + +D + Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAANPKIVAAAFSDDV 343 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 D + GS V+ V + +PS + + V I +Q++ A K Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 ++ + G S++ I++ + + V K + +A+ F + P Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449 Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481 L KDH T L +G VQ+ PA + + E Sbjct: 450 LKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITE 484 >gi|223040376|ref|ZP_03610651.1| WbnF [Campylobacter rectus RM3267] gi|222878334|gb|EEF13440.1| WbnF [Campylobacter rectus RM3267] Length = 487 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 101/427 (23%), Positives = 165/427 (38%), Gaps = 81/427 (18%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V F+ WG D +VS +S+V VG + + F N + Q +Q Sbjct: 17 WVSTIAFV--GAGFVGWGAYD--LNVSRASSVAKVGHRNISIQEFQNRYGQLHAYYNQLF 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 ++ ++A +G++ L+ LV+ A L F +D+GL + + I F+ + K Sbjct: 73 DGQLSEKKASELGIENLALEELVNDALLLNFADDLGLGVNDEDIVKYIVADQNFYV-NGK 131 Query: 132 FSHDVFVSRLAREGINEKEY-------------------------IDHYTKMLSRTDVVG 166 F +++ + L R I E EY I+ T D + Sbjct: 132 FDKELYKNTLKRARITESEYEDSLKNVILLDKLRHALNLPAKEQDINMLTASFLMQDKIS 191 Query: 167 MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIV-----LNNRHVPAIADPSNAV-LTQWFEK 219 M V + +D+ A + +E R DY L+ + +P I+ +N L +++ + Sbjct: 192 MQVVEAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDTKFIPTISSDANTTELMEFYNE 251 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K+ Y+ + +K K+ E DE+ +Y + K Sbjct: 252 NKNEYKGSD------------DKIKEFEAVKDEVLKDYNLKQTK---------------- 283 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 K A E + +KK +K +DIS+ + + SL AKKGD Sbjct: 284 -KVALEEYLKIKKDEK-----------QADISITTLE----DNASLPIDELKSAKKGDTL 327 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 GY+I V I +SF E K I + K E V+ K L E GT Sbjct: 328 KPFEYEDGYMIVKVKEIVAPRVMSFDEAKDQILELYKEQKTQETVEAKAKELLEKGFQGT 387 Query: 400 SMDEISR 406 + ISR Sbjct: 388 DIGFISR 394 >gi|110834075|ref|YP_692934.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2] gi|110647186|emb|CAL16662.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2] Length = 643 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 125/615 (20%), Positives = 245/615 (39%), Gaps = 66/615 (10%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 R+ R V K+ L + +PF+I G S V V K+ G Sbjct: 5 RRFVRGPVGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKIT-----------RG 53 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLV------SGATLDQFI----EDIGLEADHGRV 115 +++Q++ V N R +S ++ +LD+ V G +Q I E + +V Sbjct: 54 VVNQRVERVRNMLREQSPNMNPALLDSFVRPEMVLDGIVNEQLILSAAEQSNMVFSEKQV 113 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 +I + PLF D KFS F L G+N + Y+ + + + F+ Sbjct: 114 AADIYKVPLFQ-VDGKFSEQRFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSL 172 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L L++ +R ++R + Y+ L+ + S+ + +++ + + PE ++SY+ Sbjct: 173 PLELNEQRRLGEQSRDIRYVQLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYV 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTVEQLVFPNQKEAD------- 284 + ++ ++++E++AEY+ K E R V ++ + D Sbjct: 233 ELSADKYTDQVSVTDEEVEAEYDVRKSIMEEAGAGDARRHVSHILIELNDDRDLDQAKAR 292 Query: 285 --EAFQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 EA +++ G F Q +++ G + S LG SK +P+ + +I L+ Sbjct: 293 AREAAKAIADGASFADVAAQYSDDLGSAQSGGELGVVSKGALPE-EMETAIAELSPGTVS 351 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 PV+ + ++I + S ++ I + +A + ED +LEE L Sbjct: 352 APVVTDAGVHLIFVTQEDTATALPSLADLSDQIRADLTKARAESLLNEDVSKLEELLYEH 411 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL----FRVFGKD-DPLSKD 453 + + + + + +D A + ++P +Q L R G + D + D Sbjct: 412 PDLQSPAEQVGVSVVTTDWIDLAAANAP----LSLPQVQQALNSEQVRQQGHNSDLIEVD 467 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 T Y+ V+I E PA L+EV +++ K ++V A ++ + +E Sbjct: 468 ST------HYIAVRIAEDKPAEPMPLDEVSFAIRERLKGELAMDKVQQLA-KMAEKTIEE 520 Query: 514 GKNFRDIGKNLGASLLTTNQINR------MDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567 G N + + + R M+ N F ++ + PV + + + N Sbjct: 521 GGNLESVATLFDVEIAEQEGLQRGGAEPAMEVVNGAFSAPRAAEGDASPVSITR---LGN 577 Query: 568 GLSYVVFKVTNSKVG 582 G S V ++VT+ G Sbjct: 578 G-SVVAYQVTSVADG 591 >gi|256556956|gb|ACU83578.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium HF130_AEPn_2] Length = 623 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 84/407 (20%), Positives = 174/407 (42%), Gaps = 22/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V G+ + + S V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMAFTGIEAIFQATTNSQDAAKVNGEEISQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++ L + L L+ L Q D + I Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIERKLLLQGAADSKFSFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F +D KFS + F + + G + ++ +ML++ ++G G+ S + D Sbjct: 121 QTPEFQ-EDGKFSAERFDQVIRQLGYSRMQF----RQMLTQEMLIGQLRAGIAGSGFVTD 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q + E ++ D+ ++ + PA ++ + +++++ + P+ I Y+ Sbjct: 176 QEVLNFARLEKQTRDFATVSVKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA------DEAFQSL 290 ++ +++DELQA YEK + + R L+ N K EA DE L Sbjct: 236 KASFFDQVTVNDDELQALYEKETAN-LAEQRRAAHILIEVNDKVTEAQAKAKIDEVQARL 294 Query: 291 KKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E G + + LG F+ + D +++ L + PV SF Sbjct: 295 AKGESFEALAKEFSQDPGSANNGGDLG-FAGPGVYDPEFESALYGLNQDQVSAPV-RSSF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G+ + + ++ SF +K + +++ + ++ E K+LE+ Sbjct: 353 GWHLIKLLGVEAPEVPSFASLKDKLTRELKTQQVEQRFVEATKQLED 399 >gi|260555138|ref|ZP_05827359.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|260411680|gb|EEX04977.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii ATCC 19606] Length = 621 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 109/527 (20%), Positives = 209/527 (39%), Gaps = 48/527 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + L Q E R++ + A SN T ++ K+++ ++ P Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASV 226 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y++ K ++ EL+ Y K E R V+ ++ D A Q L Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286 Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339 K G F Q A + + + + G + Y P V + ++ SL K G + Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + +GY I + + + SF+ K + ++ K + + L E + Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGND 404 Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+D + ++ K I+ L V A ++ + P + LF K+ + + L Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +G +WV++++ A + L + + +VK K +E + KA Q Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502 >gi|226941261|ref|YP_002796335.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis HLHK9] gi|226716188|gb|ACO75326.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis HLHK9] Length = 607 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 135/647 (20%), Positives = 268/647 (41%), Gaps = 75/647 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E ++K T V KI L + + F+ +G+ + + + + + VG +K+ + Sbjct: 1 MFEFVQK--NTLVIKIILGAVALTFVGFGVG-SYTAATDDAYLAKVGGEKI--------Y 49 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 KQ+ I +N + A S + +++L++L+ L G+ + IA Sbjct: 50 KQD-------IERALNGQPADS-AVRQQVLESLIRQKLLLADAGQHGMRVTDAELRRVIA 101 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + F + L + ++ +++ L + FV S ++ Sbjct: 102 GIPAFQ-DNGHFDSKRYEEYLQSQYMSAEQFQARIRDELMVQQQLSAFVDATFVSPGAVE 160 Query: 181 QAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + + E R ++ Y + + +P + +A + ++++ K ++ PE R+ Y+L + Sbjct: 161 RVHKLLAEQRQINQYRLTAAQFLPGV-KVDDADVQRFYDSNKARFQTPEKVRLEYVLLSL 219 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK----- 294 E K +++S +++ YE++K + E R V ++ K A A ++ K + Sbjct: 220 EELAKTVQVSEADVRKYYEEHKAELAGDEQRQVAHILIAVPKGASAADKARLKTEAEAIV 279 Query: 295 --------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 +F LA+E+ G + LG F + + DS F LA KG + + Sbjct: 280 KEVRSNPARFAALAQEKSADPGSAAKGGDLGWFGRGVMVK-PFEDSAFKLA-KGQVSDPV 337 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FGY I V IK T ++ DI ++ A +K Y++ E L + Sbjct: 338 ETEFGYHIIKVEGIK---TPDLSTMQADIHARL----ARQKAGALYRQQLETLGDVSYQQ 390 Query: 403 EISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVA 457 S + ++ LP+ ++ K G + A P ++ F DD H + Sbjct: 391 SDSLKPVSEALKLPVQQTEWIVKGQPGSGIVANPKVDEAAF----SDDVFKGKHNSEVID 446 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 L + + V++ + PA+ + L EV ++K+ K A E++ KA + +L K GK Sbjct: 447 LGNERSVVVRVAAAEPAKLQPLAEVAPVIRKELAD-KAARELAVKAGEKLLAELKAGKT- 504 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLSYVVFKV 576 D+ + Q++R D + G D VFS V + + G + + ++ Sbjct: 505 PDVAWS------AAQQVSRRDPAS--LGRDVQRAVFSASVSKLPAYAGAAEGDGFTLVRI 556 Query: 577 TNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 ++ P E+ + + L Q+ + S + L++ Y VT+ Sbjct: 557 --DRLLPAGALTGAERQQLVGMLAQLQTAADVTSYLNGLRAAYPVTL 601 >gi|32033981|ref|ZP_00134237.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208477|ref|YP_001053702.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae L20] gi|126097269|gb|ABN74097.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 625 Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 79/395 (20%), Positives = 166/395 (42%), Gaps = 36/395 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS+D++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVNSSIFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKR 231 + + + + + V + A + A + +KY D +++ PE Sbjct: 172 DFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLT 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y+ + +++++++++ YEKNK Y + + N+ +A + +K Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341 G F +LA+ QG L G+F K + SL D G + V Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ Y I V K + ++VK I +R Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378 >gi|169796089|ref|YP_001713882.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter baumannii AYE] gi|213157178|ref|YP_002319223.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB0057] gi|215483544|ref|YP_002325763.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB307-0294] gi|301347497|ref|ZP_07228238.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB056] gi|301511279|ref|ZP_07236516.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB058] gi|169149016|emb|CAM86893.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter baumannii AYE] gi|213056338|gb|ACJ41240.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB0057] gi|213987782|gb|ACJ58081.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB307-0294] Length = 621 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 109/527 (20%), Positives = 209/527 (39%), Gaps = 48/527 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + L Q E R++ + A SN T ++ K+++ ++ P Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASV 226 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y++ K ++ EL+ Y K E R V+ ++ D A Q L Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286 Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339 K G F Q A + + + + G + Y P V + ++ SL K G + Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + +GY I + + + SF+ K + ++ K + + L E + Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGND 404 Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+D + ++ K I+ L V A ++ + P + LF K+ + + L Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +G +WV++++ A + L + + +VK K +E + KA Q Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502 >gi|71907562|ref|YP_285149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] gi|71847183|gb|AAZ46679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] Length = 628 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 120/648 (18%), Positives = 277/648 (42%), Gaps = 48/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R R + ++FL ++ +PF +G+ + S V S+G K+ F + Sbjct: 1 MFDAVRNNKR--IVQVFLALITLPFAFFGVDSYMRSAGSGGDVASIGDIKITQQQFQQTL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + ++G +++ + + ILD+L+ +Q + + H V + Sbjct: 59 REQQERLRTQLGAQFDAKMLDNPEARRAILDDLI-----NQRLLLVEASKKHMSVSNDAI 113 Query: 121 RSPLFHGK----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 R + + D KFS + + + L +G++ + + L+ + + Sbjct: 114 RQTIGAIEAFKVDGKFSTERYEAALRAQGMSPTGFEAQLRQDLTLQQLASAVGQSGLVAR 173 Query: 177 LLLDQAKRFYFENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + D+ E R V +Y ++ + +AV +++++ ++ PE + Y+ Sbjct: 174 SVSDRLLSLQTEKREVMEYRFSLESYLDKVKLADDAV-RKFYDENGQQFQMPEQAKAEYV 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------EADEAF 287 + + ++ +S+ E++A Y+ +K+++ + E R ++ ++K +A+E Sbjct: 233 VLSMDSIGSQLSVSDAEIKAWYDGHKDRFQAAEERRASHILLASEKLGKDKAKAKAEELL 292 Query: 288 QSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++K F LA ++ G + LG F + + S D+ F L K G+ + V+ Sbjct: 293 AEIRKNPAAFADLAKKNSDDPGSASKGGDLGFFGRGMMVK-SFEDTAFGL-KDGEISGVV 350 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTSM 401 FG+ I V+ I + +VK +I +++ T +S K E + + S+ Sbjct: 351 ESDFGFHIIKVTGIHAAKEKPLADVKGEIEAELKKTGSSRKFAEAAEAFSNMVYEQSDSL 410 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALP 459 ++ + K+ + D+ G+ + + E+++ +F D +K +T V + Sbjct: 411 KPVAEKFKLT---IKQSDWLGR--QANPANGVLGNEKIMAALFSDDSVKNKRNTEAVEIA 465 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + ++ + P + + V ++ K K A+ ++SK + LE K+G++ + Sbjct: 466 PNTLVAARLIDYKPTALQPFDGVKAGIETMLKR-KEAQVLASKDGEARLEALKKGEDKLN 524 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 G S L + I ++ F G ++G VE+ G Y ++K++ Sbjct: 525 WGAAKSVSRLDSRLIPPPAAQSVFRMETGKLPAYTG-VEL-------PGTGYALYKLSKV 576 Query: 580 KVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 G K + L ++ K+ + +A L+S+Y V V+ ++ Sbjct: 577 VAGENLDEASKKGMLQQLGNLVAKEEVQLYLAALRSRYKVEVNQAALE 624 >gi|307261487|ref|ZP_07543156.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868770|gb|EFN00578.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 625 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 79/395 (20%), Positives = 166/395 (42%), Gaps = 36/395 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQ--FNQSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS+D++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVNSSVFQ-QDGKFSNDLYQQTLRSNGLS----ADGYAAIVNEGMLFSQIQEGVIGS 171 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKR 231 + + + + + V + A + A + +KY D +++ PE Sbjct: 172 DFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLT 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y+ + +++++++++ YEKNK Y + + N+ +A + +K Sbjct: 232 VEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVK 291 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPV 341 G F +LA+ QG L G+F K + SL D G + V Sbjct: 292 NGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQD--------GQVSAV 343 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ Y I V K + ++VK I +R Sbjct: 344 VNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIR 378 >gi|254521282|ref|ZP_05133337.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14] gi|219718873|gb|EED37398.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14] Length = 651 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 129/577 (22%), Positives = 224/577 (38%), Gaps = 85/577 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+ + L +L +PFL + ++ G+ V V + S + W Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59 Query: 61 K-----QELGMISQKIGFVVNSERAR-----SVGLDKKILDNLVSG-ATLDQFI------ 103 Q + +Q ER R D + ++ + A LDQ I Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119 Query: 104 ---EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 E G+ G V IA P F + KF+ + + RLA G N + +++ Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNY--RLALAGGNPPRTPTQFQELVR 177 Query: 161 RTDVVGMFVGGMRPSNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQ 215 + + G++ S + ++ + E R V+ L VPA P ++A + Q Sbjct: 178 ESLQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALP--EVPADTAPVTDAQIKQ 235 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W++ + ++R E + Y+ + L+ YE K K+ SPE R + Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGGTLPAPAAADEATLRKRYEDEKAKFTSPEQRQAAHI 295 Query: 276 VFPN-------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 + K A F +L K ++ QG L + G+ K + Sbjct: 296 LITGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKAQGGDLGWVERGAMVKPF--- 352 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D++F+ AK GD + FGY I V+ ++ SF+EV R T A+E Sbjct: 353 ---EDALFA-AKAGDVIGPVKTDFGYHIIKVAAVRGGQGKSFEEV--------RDTLAAE 400 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAGKDVKGKEVAAIPYKE 437 ++K D +R LA G +D I++ ++ + LPL + + I Sbjct: 401 QLKADGERGFNELA-GRLVDAINKSPSDLAAAAKEVKLPLQTLG--PITRATASGIAADP 457 Query: 438 QLLFRVFGKDDPLSKDHT----VALPDGSYMWVQIK-------ESIPARDRKLEEVLTDV 486 +L F D L +D T +AL S V I+ +++P D+ E+V+ + Sbjct: 458 AVLRAAF--SDVLVQDGTASDPIALGGASNHSVVIRVSAHTPEQAMPL-DKAREQVIAAI 514 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + D + + S KA VL K G + + + Sbjct: 515 RADRQ-----RQASDKAADAVLAKLKGGATLQSLAAS 546 >gi|219871319|ref|YP_002475694.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165] gi|219691523|gb|ACL32746.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165] Length = 624 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 76/352 (21%), Positives = 154/352 (43%), Gaps = 39/352 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + S WV KI ++ + F++ G+ L + S V V +++ F + Sbjct: 1 MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLIATDNS--VAKVNGEEISQQVFSRAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 Q+ +++ ++G + N + + IL+ LV L Q+ + + ++ ++ Sbjct: 59 NQQQNILNAQLGERFWDLMDNPIYVKQ--FHESILNGLVDDELLRQYAKSLKIDVSADQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP F +D KF+++++ L G+ D Y ++ GM ++ + Sbjct: 117 KSEIVNSPAFQ-QDGKFNNNLYQQALRNNGLT----ADGYAAIVYE----GMLFAQIQEA 167 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVP----AIADPSNAV------LTQWFEKYKDNYR 225 +++ + + + ++L R V +IA N + ++E K N+ Sbjct: 168 --IVNSSFTVPAQQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFV 225 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 PE + YI + + KI+++N+++ Y+ NK KY + + + + EA+E Sbjct: 226 NPEKLTVEYISIEPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANE 285 Query: 286 AFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADS 328 Q+L KG+ F QLA+ QG L G F K + ++ D+ Sbjct: 286 IVQALAKGEDFAQLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANMLDA 337 >gi|322514009|ref|ZP_08067083.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC 25976] gi|322120159|gb|EFX92120.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC 25976] Length = 625 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/397 (20%), Positives = 165/397 (41%), Gaps = 40/397 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L V S+ V + +F + Sbjct: 1 MIEKMHERTNGPVFKIIFALVSLSFVITGIGTGLAGVDTSA--AKVNGTAIEQQAFNAAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A ++ IL+ L+ L Q+ +++ L ++ Sbjct: 59 SRQQNILNTQMGERFWDLLDTPEYAAQ--FNQSILNGLIDDELLRQYAQNLKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP F +D KF++ ++ L G++ D Y +++ + G+ S Sbjct: 117 KSEIVHSPTFQ-QDGKFNNQLYQQALRNNGLS----ADGYAAIVNEAMLFSQIQEGIVGS 171 Query: 176 NLLLDQAK----RFYFENRSVDYIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPE 228 + + + + + R V L N V A A A L +++ +K+ + PE Sbjct: 172 HFSVPAEQELLAKLLLQKRQVR---LANYSVAAEAQNQTASGEELQAYYDAHKNAFVEPE 228 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 I Y+ K ++++++++ YEKNK Y + + + N+ +A Q Sbjct: 229 KLAIEYVTLTPENVAKNVQVTDEQIATYYEKNKADYVTQGETHIAHIQVANEADAKALEQ 288 Query: 289 SLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 L G F LA+ QG L +G+F K + D+ L + G + Sbjct: 289 QLAGGADFSALAKAKSTDKLSAAQGGDLGWAKVGTFPKAF------EDAANGL-QVGAVS 341 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ Y I V K + ++VK +IA +R Sbjct: 342 QAVNVDGAYHIIKVLARKNEQAIPLEQVKDNIAKTIR 378 >gi|190573026|ref|YP_001970871.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia K279a] gi|190010948|emb|CAQ44557.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia K279a] Length = 651 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 126/576 (21%), Positives = 228/576 (39%), Gaps = 83/576 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+ + L +L +PFL + ++ G+ V V + S + W Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59 Query: 61 K-----QELGMISQKIGFVVNSERAR-----SVGLDKKILDNLVSG-ATLDQFI------ 103 Q + +Q ER R D + ++ + A LDQ I Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119 Query: 104 ---EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 E G+ G V IA P F + KF+ + + RLA G N + +++ Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNY--RLALAGGNPPRTPTQFQELVR 177 Query: 161 RTDVVGMFVGGMRPSNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQ 215 + + G++ S + ++ + E R V+ L VPA P ++A + Q Sbjct: 178 ESLQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALP--EVPADTAPVTDAQIKQ 235 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W++ + ++R E + Y+ + L+ YE K K+ +PE R + Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGANLPAPTAADEATLRKRYEDEKAKFTTPEQRQASHI 295 Query: 276 VFPN-------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 + K A F +L K ++ QG L + G+ K + Sbjct: 296 LITGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKGQGGDLGWVERGAMVKPF--- 352 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D++F+ AK GD + FGY I V+ ++ SF+EV R T A+E Sbjct: 353 ---EDALFA-AKAGDVIGPVKTEFGYHIIKVAAVRGGQGKSFEEV--------RDTLAAE 400 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAG-KDVKGKEVAAIPYK 436 ++K D +R LA G +D I++ ++ ++LPL +AA P Sbjct: 401 QLKADGERGFNELA-GRLVDAINKSPSDLAAAAKEVNLPLQTLGPITRATASGIAADPGV 459 Query: 437 EQLLFR-VFGKD----DPL----SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + F V +D DP+ + +H+V + ++ ++++P D+ E+V+ ++ Sbjct: 460 LRAAFSDVLVQDGTASDPIALGGATNHSVVIRVAAHT---PEQAMPL-DKAREQVIAAIR 515 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 D + + S KA VL K G + + + Sbjct: 516 ADRQ-----RQASDKAADAVLAKLKAGATLQSLAAS 546 >gi|222056568|ref|YP_002538930.1| hypothetical protein Geob_3486 [Geobacter sp. FRC-32] gi|221565857|gb|ACM21829.1| conserved hypothetical protein [Geobacter sp. FRC-32] Length = 526 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 94/432 (21%), Positives = 174/432 (40%), Gaps = 58/432 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI ++ + F L+WG D +G V K+ Sbjct: 1 MLGIMRKYKQSVLIKIVFCIIVLSFVGTIFLVWGRGD---ETTGGDFAAKVNGTKISMDD 57 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ ++ + + Q G + + + +G+ K +++L+ A + + + +G+ + + Sbjct: 58 YLKNYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLIDNALIVKEAKRMGIAVNKDEI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLA---------REGINEKEYIDHYTKMLSRTDVVG 166 EIA+ P F KD F+ D + L EG ++ + + + V Sbjct: 118 ANEIAKVPAFQ-KDGVFNFDQYTQMLKAYRMTPANFEEGQEQEMLVKKAREKVKERATV- 175 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 S+ L QA F +N VD +I + V ++ LT + + ++ + Sbjct: 176 --------SDQDLQQA--FNKQNDKVDLSFISFSPSDVKNEVKVTDQDLTTYLQGHEKEF 225 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------PEIRTVEQLVF 277 + PE I+Y L K ++++E + Y KN ++Y E++ + Sbjct: 226 QTPEKVSIAYALVSPSRFSSKATVTDEEAETYYRKNIDRYQGKGGILPFAEVKDRAKADA 285 Query: 278 PNQKEADEAFQSLK-------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-- 328 QK EA++++ KG A G + + L F+ + P LAD Sbjct: 286 IKQKGTREAYETVADTINKNLKGGDIKAAAASLGVKVDETPL--FTAKTAP-APLADEGE 342 Query: 329 ----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 F L K+G+ I + G I V KP+ E+K + ++ KA E Sbjct: 343 VIKRAF-LLKQGELGGPIETAKGIYIIKVMEKKPAAVPPLAEIKGQLTQKVTEEKARELA 401 Query: 385 KEDYKRLEEFLA 396 K K+ EE LA Sbjct: 402 K---KKAEEALA 410 >gi|239501895|ref|ZP_04661205.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB900] Length = 621 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 109/527 (20%), Positives = 209/527 (39%), Gaps = 48/527 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + L Q E R++ + A SN T ++ K+++ ++ P Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASV 226 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y++ K ++ EL+ Y K E R V+ ++ D A Q L Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286 Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339 K G F Q A + + + + G + Y P V + ++ SL K G + Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + +GY I + + + SF+ K + ++ K + + L E + Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKPLLIAEVEKNKVASVYSDTVNSLNETIVGND 404 Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+D + ++ K I+ L V A ++ + P + LF K+ + + L Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +G +WV++++ A + L + + +VK K +E + KA Q Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502 >gi|313672156|ref|YP_004050267.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] gi|312938912|gb|ADR18104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] Length = 623 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 140/638 (21%), Positives = 260/638 (40%), Gaps = 80/638 (12%) Query: 25 FLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM-ISQKIGFVVNSER 79 FL+WG+ + +++ VVS K + + N+++Q G I QK+ Sbjct: 28 FLVWGVGGKGNQKTYALKIDDHVVSFNEYKTTYENISNTYRQLFGANIDQKM-------- 79 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K++++ ++S L + L V EI + P F + +F + ++ Sbjct: 80 -----LSKQVIEEIISKYLLLDEANRLKLPVTDAEVLAEIKKVPAFQV-NGQFDKNRYLE 133 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA--KRFYFENRSVD--YI 195 L I + + + L ++ G + S + DQ K + N++V+ YI Sbjct: 134 VLRLNQITPETFENDIRVNL----LLNKMKGVIATSVYVNDQEILKEYRMRNKAVEISYI 189 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 ++ + L +++ + K+ + P ++ Y+ F + IS ELQ+ Sbjct: 190 KVSPEDFEKDVKVDDKSLEKYYLENKNEFLEPTKAKLKYVEFAPDNVKIDDNISEQELQS 249 Query: 256 EYEKNKEKYFSPE-IRTVEQLV----FPNQ-------KEADEAFQSLKKGKKFIQLAEEQ 303 Y KNKE++ E I+ L+ F + K+A+E ++ K G KF +LA++ Sbjct: 250 YYLKNKEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKAEEIYKKAKSGAKFEELAKQY 309 Query: 304 GKSLSDISLG--SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 +S + G F K + D++FSL K+G+ + + SFGY I P Sbjct: 310 SDDISKNNGGDLGFVKRGMMIKEFEDALFSL-KEGEISKPVKTSFGYHIIKNEKYLPKKE 368 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK-----RLEEFLALGTSMDEISRREKIVSIDLP 416 +F EVK +Q+R T +K+ +K + +E + G I + K S+++ Sbjct: 369 YTFAEVK----DQIRSTILKDKIMSQFKQSVQAKYKEIQSFGNLSGYIVKNPK--SLEIK 422 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT----VALPDGSYMWVQIKESI 472 D+ + V+ IP E + K++ L D T + L +G Y +I + I Sbjct: 423 ETDYISEGVRD---TFIP--EDI------KNELLKLDKTELSSLYLINGKYYLFEIADKI 471 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTT 531 LE++ V K + + + KA++ GK N + K L + Sbjct: 472 TPTVPPLEKIKEKVIKSYVRKQASIIAKQKADEAA------GKSNINEAAKFLNLAPQDV 525 Query: 532 NQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQE 586 R+D N +F+ + I++G SY V V N S ++ Sbjct: 526 AAFKRIDPIPNIGVNSTMTEAIFTTKAPAMVKSSIQHGSSYYVIYVKNFLPASDDKLPEQ 585 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ YL + + +S I LK + + NL++ Sbjct: 586 RNTIAQYLINLKQTEAYNSYIEKLKKDARIDISPNLLE 623 >gi|293605682|ref|ZP_06688060.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292815920|gb|EFF75023.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 684 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/392 (19%), Positives = 155/392 (39%), Gaps = 19/392 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR + R W+ I L+++ F + G+ + + +V Q + + F + Sbjct: 31 MFEFIR-SHRRWMQLILLLLIVPSFFLVGIQGYDSFMRKEPELATVAGQPISRAEFDQAH 89 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q+ G + + + L + +L+ L++ L D + IA Sbjct: 90 RNQLEQMRQRQGARFDPAVSDTPALREGLLNQLINQRLLANVAVDNRFNVSDETLRNTIA 149 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ R ++ Sbjct: 150 AIPEVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVGRVLDPVGQSARAPAEVVA 208 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V + S A + W++ K + PE ++ Y++ D Sbjct: 209 SLESALTQQRTVQLRRFAAEDYRSQVTVSPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 268 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------------DEAF 287 + I++ +++L + YE+NK ++ PE R ++ A D A Sbjct: 269 AATQGIQVKDEDLASYYEQNKNRFGQPERRRASHIMIELAPGASEEARKAARAKAEDLAK 328 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHG 344 Q+ KF +LA + + S G P + L +IF AK + V+ Sbjct: 329 QAAADPSKFAELATKNSQDAGSASKGGDLGWLAPGMLSGPLEKAIFGQAKD-QVSGVVES 387 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 G I V+ I+P+ EVK I +++R Sbjct: 388 PAGLHIVKVTEIQPAAIKPLAEVKDQITSEVR 419 >gi|330503121|ref|YP_004379990.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] gi|328917407|gb|AEB58238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] Length = 615 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/404 (19%), Positives = 170/404 (42%), Gaps = 20/404 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR SR W+AKI + ++ + G + S + V + + + Sbjct: 1 MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAADVNGDTITLNELNQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++G ++ L + L L+ L Q D G + I Sbjct: 61 EMQRRQLLQQLGRDFDASLLDEKLLREASLKGLIERKLLLQAANDAHFAFSQGSLDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D +F F + + G ++ +ML ++G G+ S+ + + Sbjct: 121 QTPEFQ-VDGRFDASRFDQVIRQMGYTRLQF----RQMLEEEMLIGQLRAGLGASSFVTE 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q R + E ++ D+ L + PA + ++A + +++++ + +PE + Y+ Sbjct: 176 QEARAFANLERQTRDFASLTIKADPAAVELNDADVKAYYDEHASEFMSPEQVVLEYVELQ 235 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKG 293 ++E+S+++L+ YE E E R ++ EA +E + + G Sbjct: 236 KDSFFDQVEVSDEDLKPLYE--SEIANLAEQRQAAHILIEGDDEAARSKIEEIKKRVDAG 293 Query: 294 KKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA+E G ++ LG ++ + D + ++++L ++G + + FG+ Sbjct: 294 EDFAALAKEFSQDPGSAVDGGDLG-YAGPGVYDPAFEKALYAL-QQGQVSEPVKSEFGWH 351 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + ++ SF +K +A + + + E K+LE+ Sbjct: 352 LIKLLGVQAPEVPSFDSLKDKLARDFKAQQVEQHFVEATKQLED 395 >gi|33152751|ref|NP_874104.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP] gi|38605184|sp|Q7VKX4|PPID_HAEDU RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|33148975|gb|AAP96493.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP] Length = 620 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 133/667 (19%), Positives = 283/667 (42%), Gaps = 91/667 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + + K+ ++ + F++ G+ L V ++ V V + +F + Sbjct: 1 MIEKMHERTNSVAFKVIFALVSLSFVLTGIGTGL--VGADTSAVKVNGTTIDQHAFNTAK 58 Query: 61 KQELGMISQKIG-----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G + E A+ ++ +LD LV+ + Q+ +D+ L ++ Sbjct: 59 ARQQNVLNAQLGERFWDLLDTPEYAKQ--FNQSVLDGLVNDELMRQYAKDLKLGISANQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 +I S +F +D KF+++++ L G+ D Y +++ ++ G+ S Sbjct: 117 KSQIVNSQIFQ-QDGKFNNELYQHTLRNNGLT----ADGYAAIVNEGMLLSQIQKGIVES 171 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAV--LTQWFEKYKDNYRAPEYKR 231 + + + + V + A IA+ + +V L ++++ K + PE Sbjct: 172 DFSVPVTEALLAKLLLQQRQVRLATYPIAKEIANQTASVEELQKYYDAKKTDLVEPEQLV 231 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + Y+ F + EK I+++++++ YEKNK + + + + N+++A + ++LK Sbjct: 232 VEYVTFMPKDIEKNIQVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVAEALK 291 Query: 292 KGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 +G F LA +QG L G F P++ + +LA PV Sbjct: 292 QGTDFAMLANDTSTDSLSAQQGGDLGWTKAGIF-----PEI-FEQTANALAINEVSEPVK 345 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + Y I V + K + F+ VK I +R E + +Y + +A + + Sbjct: 346 VDN-NYHIIKVLDRKEDVALPFEMVKDKIVKIIR----DELLLTEYSNISHEMA-NKAFE 399 Query: 403 EISRREKIVSIDLPLVDFAGKDVKG------KEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 S ++ I AG +V+ + + A E+++ +F + S ++ Sbjct: 400 NSSSLAEVAQI-------AGVNVQTSTQFNREHIPADLNNEKVIKALFNGELRQSGQNSD 452 Query: 457 ALPDGS-----YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 AL G+ M+V++++ P R R +E D+++ K KA QL+L + Sbjct: 453 ALDVGNEREPKTMFVRVRDFYPERVRTFDEAKADIEQIVK--------HQKAEQLLLAKA 504 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571 +E N+ A L N +N NE + Y ++ P+ F ++ Sbjct: 505 EE---------NVKA-LNEGNAVNVDFNEAETLVY---AKRADNPILFKTVFAMQKPTDK 551 Query: 572 VVFKVTNSKVGPV-------------QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 ++VT+++ G V +E S L Q+ L + ++ L+S+ SV V Sbjct: 552 PTYQVTHNQQGDVVIVSLEKVIDGKQEEFAPLASQLKQLDQTLLRNDLLKDLRSRASVDV 611 Query: 619 HDNLIQR 625 + N I++ Sbjct: 612 NQNFIEQ 618 >gi|169633493|ref|YP_001707229.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter baumannii SDF] gi|169152285|emb|CAP01195.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter baumannii] Length = 621 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 112/535 (20%), Positives = 213/535 (39%), Gaps = 64/535 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DP-------SNAVLTQWFEKYKD 222 S + L Q E R++ H+ +I DP SN T ++ K+++ Sbjct: 167 YSLVSKVDLMQIANLQTEQRTL--------HLASIKLDPYKTGLTASNQEATDYYNKHQN 218 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ P + Y++ K ++ EL+ Y K E R V+ ++ Sbjct: 219 EFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDAR 278 Query: 283 ADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFS 331 D A Q L K G F Q A + + + + G + Y P V + ++ S Sbjct: 279 DDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLS 338 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L K G + + +GY I + + + SF+ K + ++ K + + L Sbjct: 339 L-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSL 396 Query: 392 EEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 E + S+D + ++ K I+ L V A ++ + P + LF K+ Sbjct: 397 NETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDR 452 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + L +G +WV++++ A + L + + +VK K +E + KA Q Sbjct: 453 NASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502 >gi|153209250|ref|ZP_01947306.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|120575458|gb|EAX32082.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] Length = 522 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 103/515 (20%), Positives = 214/515 (41%), Gaps = 65/515 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y+++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQ----- 280 PE I+Y+L +++ +S+ E++ YE N+E K F+ ++Q + + Sbjct: 225 PEKLSIAYLLLSPEMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLL 284 Query: 281 -KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----------YIPDVSLADSI 329 K++D+ ++ A Q + +L FS+E I + +D + Sbjct: 285 TKKSDQLSTITYTNPTSLEPAARQLNLKINTTL-LFSREGEKEGIAANPKIVAAAFSDDV 343 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 D + GS V+ V + +PS + + V I +Q++ A K Sbjct: 344 LQGGNNSDVIELKDGSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAG 401 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 ++ + G S++ I++ + + V K + +A+ F + P Sbjct: 402 EIQNEIHEGRSVESIAKANHLFWRNEKEVKRNNKSIPAAVMASA-------FSI-----P 449 Query: 450 LSKDH---TVALPDGSYMWVQIKESIPARDRKLEE 481 L KDH T L +G VQ+ PA + + E Sbjct: 450 LKKDHSMTTTVLNNGDSDVVQLTAIKPANFKNITE 484 >gi|184157984|ref|YP_001846323.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ACICU] gi|332874443|ref|ZP_08442346.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059] gi|183209578|gb|ACC56976.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter baumannii ACICU] gi|323517928|gb|ADX92309.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter baumannii TCDC-AB0715] gi|332737287|gb|EGJ68211.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059] Length = 621 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 108/527 (20%), Positives = 210/527 (39%), Gaps = 48/527 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ + ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSNAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + L Q E R++ + A S+ T ++ K+++ ++ P Sbjct: 167 YSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASV 226 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y++ K ++ EL+ Y K E R V+ ++ D A Q L Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKL 286 Query: 291 KK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339 K G F Q A + + + + G + Y P V + ++ SL K G + Sbjct: 287 AKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQIS 345 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + +GY I + + + SF+ K + ++ K + + L E + Sbjct: 346 QPVKTQYGYHIIE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGND 404 Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+D + ++ K I+ L V A ++ + P + LF K+ + + L Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQL 460 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +G +WV++++ A + L + + +VK K +E + KA Q Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEVK-----AKVIDEKARKAAQ 502 >gi|260550156|ref|ZP_05824370.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624] gi|260406911|gb|EEX00390.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624] Length = 621 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 105/527 (19%), Positives = 209/527 (39%), Gaps = 48/527 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ L++ P + G++ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGINGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQALIASLRQDHALKMLTST-----FSD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + + Q E R++ + SN T ++ K+++ ++ P Sbjct: 167 YALVSKVDVMQIANLQTEQRTLHLASIKLDTYKTGLTASNQEATDYYNKHQNEFKQPASV 226 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKE 282 + Y++ K ++ EL+ Y K E R V+ ++ QK Sbjct: 227 DVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKNAKRVVKHILITTDARDDAAAQKL 286 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV--SLADSIFSLAKKGDFTP 340 A+E + ++ G F Q A + + + + G + Y P V D S K G + Sbjct: 287 ANEVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVSSLKNGQVSQ 346 Query: 341 VIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + +GY I P+ + SF+ K + ++ K + + L E + Sbjct: 347 PVKTQYGYHIIEAET--PANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGND 404 Query: 400 SMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+D + ++ K I+ L V A ++ + + P + LF K+ + + L Sbjct: 405 SLDAVVQQVKGTKIESLNGVTLATQNPQLSD----PNVKIKLFNDDVKNGDRNASSNIQL 460 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +G +WV++++ A + L + + + K K +E + KA Q Sbjct: 461 ANGDTVWVKVRDYHAAGVKPLAQAMNEAK-----AKVIDEKARKAAQ 502 >gi|332851740|ref|ZP_08433665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150] gi|332865885|ref|ZP_08436665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113] gi|332729747|gb|EGJ61082.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150] gi|332734935|gb|EGJ66021.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113] Length = 621 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 112/535 (20%), Positives = 213/535 (39%), Gaps = 64/535 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDIS--------K 52 Query: 62 QELGMISQK-----IGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++L ++Q+ + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 53 KDLETLTQRYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQI 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVG 170 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 113 EQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTST-----FAD 166 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DP-------SNAVLTQWFEKYKD 222 S + L Q E R++ H+ +I DP SN T ++ K+++ Sbjct: 167 YSLVSKVDLMQIANLQTEQRTL--------HLASIKLDPYKTGLTASNQEATDYYNKHQN 218 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ P + Y++ K ++ EL+ Y K E R V+ ++ Sbjct: 219 EFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDAR 278 Query: 283 ADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFS 331 D A Q L K G F Q A + + + + G + Y P V + ++ S Sbjct: 279 DDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLS 338 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L K G + + +GY I + + + SF+ K + ++ K + + L Sbjct: 339 L-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 396 Query: 392 EEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 E + S+D + ++ K I+ L V A ++ + P + LF K+ Sbjct: 397 NETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDR 452 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + L +G +WV++++ A + L + + +VK K +E + KA Q Sbjct: 453 NASSNIQLANGDTVWVKVRDYHAAGVKPLTQAMNEVK-----AKVIDEKARKAAQ 502 >gi|289811437|ref|ZP_06542066.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 408 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 185/426 (43%), Gaps = 35/426 (8%) Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + PE R+SYI D + + S+ ++QA Y+++ +++ PE + Sbjct: 2 YYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSII 59 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIF 330 + +A +L KG+ F LA+E+ + G +P++ A Sbjct: 60 QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA---- 115 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 L +KG + VI S G+++A + +I+P+ EV+ DIA +++ EK + Y Sbjct: 116 GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYA 171 Query: 391 LEEFLALGTSMD--EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKD 447 L++ ++ S D ++ E++ + + +D +E+ P + + + G++ Sbjct: 172 LQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGEN 231 Query: 448 DPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + + DG + V++ E P + L EV V K K ++ A +L Sbjct: 232 GTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKL 291 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ---VFSGPVEMVKCF 563 ++E K GK + K G S ++R D +SQ S P + + Sbjct: 292 LVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQ-------DPVSQAAFALSLPTKDKPVY 342 Query: 564 PIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + N + + V+ K G P +K + +TQ + + +++++ L+ + + + Sbjct: 343 GVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIG 402 Query: 620 DNLIQR 625 D L Q+ Sbjct: 403 DALEQQ 408 >gi|95930881|ref|ZP_01313612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas acetoxidans DSM 684] gi|95133123|gb|EAT14791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas acetoxidans DSM 684] Length = 664 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 116/576 (20%), Positives = 230/576 (39%), Gaps = 75/576 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLS-DALFSVSGSSTVVSVGRQKVPFS 54 ML++IRK +T V K+ V+ F L+WG D ++ V + F Sbjct: 19 MLDLIRKKQKTTVVKVVFWVIIATFIGTIFLVWGKGRDQQRDIT---VAAQVNGTDISFE 75 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 F ++ + G E + + L ++ ++ L+ A L + E + + Sbjct: 76 QFRTTYSNMYNLYHNLYGQNFTPELEKQLQLTRQSINLLIDQALLLEEAERMHVSISDDE 135 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + IA P F D F+ + ++S L+ + + + + +M + +V + +R Sbjct: 136 LVKAIAEVPAFQ-VDGVFNKEQYISVLSYQRMTP----ELFEQMQKQQMLVNLTQAQIRS 190 Query: 175 SNLLLDQ----AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 ++ D+ R EN ++ Y+ D ++ LT ++E ++ +R + Sbjct: 191 EAVVTDEDVADEYRRLNENVNLSYVAFKTGAFTDAVDVTDDALTAYYEANQEAFRVAQQV 250 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--- 287 +S + + ++ + ++Q Y+++ Y PE ++ P ++AD+A Sbjct: 251 NLSLVTLSPADYLDQVVLEEGDIQRYYDRHLATYAIPEQMAAAHILIPVAQDADDAQREK 310 Query: 288 ------QSLKKGKK--FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKK 335 Q L+K + F +LA++ + LG F + + D + + F+L +K Sbjct: 311 QRVLAEQVLEKAQTGDFAKLAKQYSADTATAQKGGDLGLFQRG-VMDPAFEAAAFAL-QK 368 Query: 336 GDFTPVIHGSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +P++ FGY +I +I+ FT +V+ ++ +R+ +A + Sbjct: 369 DALSPIVETRFGYHIIKGGEHIEAGFT-PLADVRDEVEKALRLDEARK------------ 415 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKG---KEVAAIP---YKEQLLFRVFGKD- 447 LA +MD + K + V+ ++ AIP +L R FG Sbjct: 416 LAYEKAMDAYNLNRKESNFSAAAESLGATPVETGLFSQMQAIPTVGVSSELTERAFGAAA 475 Query: 448 ----DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK---TVKTAEEVS 500 P++ V L + E+I + +L V +V + +K V AEE + Sbjct: 476 GEMLAPVNTTRGVVL-------ATVTENIASHIPELSAVKAEVTEAYKRQQAVVLAEEAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 KA LE ++G + I N G + T NR Sbjct: 529 QKA----LEKIQQGAKLKSIADN-GRKVQETGLFNR 559 >gi|170733279|ref|YP_001765226.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia MC0-3] gi|169816521|gb|ACA91104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia MC0-3] Length = 645 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 74/369 (20%), Positives = 146/369 (39%), Gaps = 32/369 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQHLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 LS + V L + + R V +VL A P++A LT + Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + + +++ Y+ N + + ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ FSL K+GD + ++ G+ I + +KP+ F EVK IA Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAV 392 Query: 374 QMRITKASE 382 ++ AS+ Sbjct: 393 DLKQQYASK 401 >gi|212212179|ref|YP_002303115.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212] gi|212010589|gb|ACJ17970.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212] Length = 522 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/276 (21%), Positives = 126/276 (45%), Gaps = 30/276 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVSAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISRAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 PE I+Y+L +++ +S+ E++ YE N+E Sbjct: 225 PEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNRE 260 >gi|311106582|ref|YP_003979435.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8] gi|310761271|gb|ADP16720.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8] Length = 653 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 80/408 (19%), Positives = 163/408 (39%), Gaps = 21/408 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR + R W+ I L+++ F + G+ + + +V Q V + F + Sbjct: 1 MFEFIR-SHRRWMQFILLLLIVPSFFLVGIQGYDSFMRAEPELATVNGQPVTRAEFDQAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + L + +L+ L++ L D + IA Sbjct: 60 RNQLEQFRQRLGAQFDPAVIDTPALREGLLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ R ++ Sbjct: 120 AIPEVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPGEVVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V + + A + W++ K + PE ++ Y++ D Sbjct: 179 ALETALTQQRTVQLRRFAAADFRSQVSATPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKE----------ADEAF 287 + +++ +++L + YE+NK ++ PE R ++ P E D A Sbjct: 239 AATQGVQVKDEDLASYYEQNKNRFGQPERRRASHIMINLAPGASEDARKAARAKAEDLAK 298 Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ +F +LA ++ G + + LG + + L +IF AK + VI Sbjct: 299 QAAADPAQFAELARKNSQDAGSAANGGDLGWLAPGMLTG-PLEKAIFGQAKD-QVSGVIE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + V+ I+P+ EVK I ++R A+ + E +L Sbjct: 357 TPSGLHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQL 404 >gi|325122070|gb|ADY81593.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter calcoaceticus PHEA-2] Length = 582 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 110/523 (21%), Positives = 203/523 (38%), Gaps = 71/523 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+K+ Q + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 61 SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTST-----FADYS 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S + L Q E R++ + SN T ++ K+++ ++ + Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDV 228 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284 Y++ K + ELQ Y K E RTV+ ++ QK A Sbjct: 229 DYVVLSPSMMAKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341 E + ++ G F Q A + + S + G + Y P V + ++ SL K G + Sbjct: 289 EVYAKIQGGLSFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVLSL-KNGQVSQP 347 Query: 342 IHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + +GY I +N PSF A + R+T EK K +A Sbjct: 348 VKTQYGYHIIEAETQANQIPSFE----------AEKARLTAEVEKNK---------VATV 388 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---------PY--KEQLLFRVFG-- 445 S S E IV D ++ ++VKG +V ++ PY + ++F Sbjct: 389 YSDAVNSLNETIVGND--SLEAVVQEVKGAKVESLNGVTLATQNPYLSDPSVKIKLFNDD 446 Query: 446 -KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 K+ + + L +G +WV++++ A + L + + + K Sbjct: 447 VKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEAK 489 >gi|254247971|ref|ZP_04941292.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia PC184] gi|124872747|gb|EAY64463.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia PC184] Length = 645 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 74/369 (20%), Positives = 146/369 (39%), Gaps = 32/369 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 LS + V L + + R V +VL A P++A LT + Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + + +++ Y+ N + + ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ FSL K+GD + ++ G+ I + +KP+ F EVK IA Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAV 392 Query: 374 QMRITKASE 382 ++ AS+ Sbjct: 393 DLKQQYASK 401 >gi|212219179|ref|YP_002305966.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154] gi|212013441|gb|ACJ20821.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154] Length = 522 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/276 (21%), Positives = 127/276 (46%), Gaps = 30/276 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKIS------- 53 Query: 60 WKQELGMISQKIGFVVNSER------ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + EL ++ Q++ + +R A++ L ++ L NL+ L E +G Sbjct: 54 -ENELNVVFQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPA 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-- 171 + I P F ++ KFS F L + +++ ++ V G Sbjct: 113 EINQIITVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAF 171 Query: 172 MRPSNL-----LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + P+ + L++QA+ F Y+++++ + + ++ +++K++++++A Sbjct: 172 VLPNEIKNNYELINQARDF-------RYMIISSAPFLKESKVTPEMIADYYQKHRESFKA 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 PE I+Y+L +++ +S+ E++ YE N+E Sbjct: 225 PEKLSIAYLLLSPEMILQQVSVSDHEIKQYYESNRE 260 >gi|107028901|ref|YP_625996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116689941|ref|YP_835564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] gi|105898065|gb|ABF81023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116648030|gb|ABK08671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] Length = 645 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 74/369 (20%), Positives = 145/369 (39%), Gaps = 32/369 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 LS + V L + R V +VL A P++A LT + Sbjct: 159 YSLSLQQIPASIVSSAFTPKSLAQHLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + + +++ Y+ N + + ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ FSL K+GD + ++ G+ I + +KP+ F EVK IA Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAV 392 Query: 374 QMRITKASE 382 ++ AS+ Sbjct: 393 DLKQQYASK 401 >gi|171322244|ref|ZP_02911086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MEX-5] gi|171092428|gb|EDT37778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MEX-5] Length = 644 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/363 (19%), Positives = 144/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V ++ K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAINGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMNDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V + + R V +VL A P++A LT + Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLTTSDYAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + S ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAGASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+GD + V+ G+ I + +KPS F +VK IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSLVKPFADVKDQIAV 392 Query: 374 QMR 376 Q++ Sbjct: 393 QLK 395 >gi|116619198|ref|YP_821354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] gi|116222360|gb|ABJ81069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] Length = 644 Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 118/578 (20%), Positives = 234/578 (40%), Gaps = 60/578 (10%) Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR--SPLFHGKDNKF-SHDVFVSRLARE 144 +++D +V+ + E +G + V I + LF D KF + + + LA++ Sbjct: 83 QMVDQMVTERAMAMEAERLGYQVSDADVADSIRQMVPSLF--PDGKFVGKETYAAMLAQQ 140 Query: 145 GINEKEYIDHYTKMLSRTDVVGMF----VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 + ID + L R + F + G + ++ A + E V+++ L Sbjct: 141 NMT----IDQFEADLKRQVAISRFRDIAMEGTIVTPAEIEAAFKKKNEKIKVEWVKLTAD 196 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + PS L +++ Y PE + ++ + D + + I++ +LQ Y++N Sbjct: 197 KYKGESQPSAQELQDFYKANVSRYTVPEKRNLTVLTADEAKMSASLNITDADLQRVYDQN 256 Query: 261 KEKYFSPEIRTVEQLVF-----PNQKEA------DEAFQSLKKGKKFIQLAEEQ----GK 305 KE + +PE ++ P +EA + + +K G F +LA+E G Sbjct: 257 KEAFRTPERVKARHILLKTQGKPASEEAAIKAKGESLLKQIKAGGDFAKLAKENSEDPGS 316 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 +++ LG + +IF+L K G+ + ++ +GY I + + +F Sbjct: 317 AVNGGDLGDWITHGQMVAEFDKAIFAL-KPGEVSDLVKTQYGYHIVQTLAKQDAGMRTFA 375 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-IDLPLV---DFA 421 EVK D+A Q + + SE +++ R + L + EK+ + +++ L +FA Sbjct: 376 EVKGDLATQYKKQRVSELMQQASDRAQAAL-----QKDPQHPEKVAAELNMQLAKVPNFA 430 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP---DGSYMWVQIKESIPARDRK 478 G + +P F + K V+ P + + + + IP Sbjct: 431 ----PGGAIGELPANAD-----FDQSVANLKKGEVSQPVTVNNKVVVAVVDDVIPGHPST 481 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 EEV ++ + A V AN+LV + G + K++G + T+ ++R Sbjct: 482 FEEVQGQIRDTIVANRAAAAVQRHANELVEKAKAMGGDLEKAAKSMGLDVKTSGDVDRSG 541 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVG----PVQE---KDK 589 N I++ FS P V PI +G + V+ ++++ P Q +D+ Sbjct: 542 NIEGLGTASYIAEGFSRPDGTVYG-PIGTPDGGTVVMKVISHTGADMAQLPAQRNAIRDE 600 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 S + N + V L Q + +H ++I R + Sbjct: 601 IKSQRARDRNTLFENGVKDMLIKQGKIKIHQDVINRLI 638 >gi|172060885|ref|YP_001808537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] gi|171993402|gb|ACB64321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] Length = 644 Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 72/363 (19%), Positives = 144/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V + + R V +VL A P++A LT + Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLKTSDYAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + S ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKTKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+GD + V+ G+ I + +KPS F +VK IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSVVKPFADVKDQIAV 392 Query: 374 QMR 376 Q++ Sbjct: 393 QLK 395 >gi|163856532|ref|YP_001630830.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii DSM 12804] gi|163260260|emb|CAP42562.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii] Length = 653 Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 78/411 (18%), Positives = 157/411 (38%), Gaps = 19/411 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E++R R W+ I L+++ F + G+ + + +V Q + S F + Sbjct: 1 MFELLRN-HRRWMQFILLILIVPSFFLVGIQGYESFIRREPELATVAGQPITRSEFDMAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + + +++L+ L+ L Q D G + IA Sbjct: 60 RNQLEQFRQRLGSQFDPALVDTPAMREQLLNQLIDQRLLAQVAIDNRFSVSDGTLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G+ + + L+ V+ + ++ Sbjct: 120 AIPQVQ-DNGRFSPERYRQVLAAQGMTPTSFEAGLRRDLAVGRVLEPINQSAGAPDAVVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ K PE Y++ D Sbjct: 179 SLESALTQQRTVQLRRFAAADYRAQVSVSPEDIQTWYDGNKQQLTVPEQVTAQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287 + +++ +++ + YE+NK ++ PE R ++ A E A Sbjct: 239 AATQGVQVKEEDIASYYEQNKNRFGQPERRRASHIMIELPAGASEDARKAAHAKAEALAK 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHG 344 Q+ +F +LA + G P + L S+F LAK + V+ Sbjct: 299 QAAADPAQFAELARANSQDAGSAGKGGDLGWLAPGMLAGPLEKSVFGLAKD-QVSGVVES 357 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G I V+ I+P+ EV+ +I ++R A+ + E +L E + Sbjct: 358 PSGLHIVKVTEIQPAAIKPLAEVRDEITAEIRKQIAATRFSEMATKLTEIV 408 >gi|332524209|ref|ZP_08400435.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Rubrivivax benzoatilyticus JA2] gi|332107544|gb|EGJ08768.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Rubrivivax benzoatilyticus JA2] Length = 635 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 81/406 (19%), Positives = 175/406 (43%), Gaps = 27/406 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + +R SR + + ++++F F+ +G+ + F+ G+ TV VG Q + + + + Sbjct: 1 MFDFVRNHSRLVLGIL-VLLIFPSFIFFGVQGYSRFTEGGAVTVAEVGGQAISRAEWDAA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + + ++ ++ + + L ++ LD LV L L D R+ Sbjct: 60 HQNNIERLRRQRP-ELDPKLLETPELKRETLDGLVRDRVLMATARQYHLVPDDARLQRLF 118 Query: 120 ARSPLFHGKDNKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P F G N D V+R LA +G++ + + + V+G Sbjct: 119 VTDPQFAGLRNP---DGSVNREILAAQGMSVEAFEQQLRQEFGMQQVLGAVAQSSFTPPA 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V + A A P +A L ++E + +RAPE +I Y++ Sbjct: 176 VAATSLDALLQRREVQIQRFDAAAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVVL 235 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGK 294 D+ K + + ++L+ YE+N +Y E R ++ P+ ADE + + + Sbjct: 236 DLAALAKDVAVPEEDLRRYYEENASRYTQAEERRASHILIRVDPS-APADEKKAAKARAE 294 Query: 295 KFIQLAEEQGKSLSDISL------GSFSK----EYIPDVSLA----DSIFSLAKKGDFTP 340 + + S ++++ GS S+ ++ +A D+++++ K G+ + Sbjct: 295 QLLAEVRRSPNSFAEVARKNSQDPGSASRGGDLDFFGRGMMAKPFEDAVYAM-KTGEISN 353 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 VI FGY + ++ ++ +F V+ +I ++R + A ++ E Sbjct: 354 VIETDFGYHVITLTGLRGGQKKAFDTVRAEIEQEVRRSLAQKRYAE 399 >gi|332284237|ref|YP_004416148.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7] gi|330428190|gb|AEC19524.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7] Length = 655 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 91/398 (22%), Positives = 168/398 (42%), Gaps = 40/398 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + IR R + ++ L+VL +P F++ G+S VSG +V++G + F + Sbjct: 1 MFDFIRTHQR--LMQLVLLVLILPSFVLIGVSGYTNYVSGDHDIVTLGDTSITQQDFDQA 58 Query: 60 WKQELGMISQKIG-----FVVNSERARSVGLDKKILDN--LVSGATLDQF-IEDIGLEAD 111 + +L + Q +++S ARS L+ ++D LV AT ++F + D L Sbjct: 59 RRNQLQQLQQSSQGAFDPAILDSPAARSALLES-LIDRTVLVETATKERFSVSDSVLRQ- 116 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 IA P D +FS + + LA G+ +++ L+ V+G Sbjct: 117 ------TIASMPQLQ-VDGQFSAERYNDVLASAGLTTRDFEQSQRGELALGRVLGPVTMT 169 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 ++++D+ K E R++ + ++A + W+EK K + PE Sbjct: 170 ASVPSVVIDKLKLALTEQRTIRLLAFPAAEQEKEVQITDADIQDWYEKNKQSLELPEQLS 229 Query: 232 ISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS- 289 Y+L + + +IS+++LQ YE+NK +Y P V + +A EA +S Sbjct: 230 AQYLLLNEEAAMANLPQISDEDLQKYYEQNKARYVQPARVNVSHIQINIPADASEAQRSE 289 Query: 290 -LKKGKKFIQL---------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 L K + + +++ G + LG +K P L +F+L Sbjct: 290 ALAKAQDIAKRAQADAAAFAELAQNESQDAGTAKEGGKLGWITKGSWP-AQLEQVVFAL- 347 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 K G + + G GY + + ++ SF+E K + Sbjct: 348 KAGQVSDAVEGPGGYHVFLANEVQAEKGESFEEAKAKV 385 >gi|33592803|ref|NP_880447.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama I] gi|33572451|emb|CAE42019.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama I] gi|332382216|gb|AEE67063.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS] Length = 651 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/277 (19%), Positives = 116/277 (41%), Gaps = 2/277 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F + Sbjct: 1 MFEIIRT-HRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q++G + + + +++L+ L+ L D G G + IA Sbjct: 60 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ + Sbjct: 120 AIPQVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ ++ R PE + Y++ D Sbjct: 179 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + +++ ++++ + YE+NK ++ PE R V ++ Sbjct: 239 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMI 275 >gi|291614259|ref|YP_003524416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] gi|291584371|gb|ADE12029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] Length = 628 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 100/527 (18%), Positives = 222/527 (42%), Gaps = 53/527 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +++ R + +I L ++ +PF WG++ S SG++ + +V +K+ F ++ Sbjct: 1 MFDFVQEKRR--LVQIVLALIILPFAFWGVTSYRNS-SGTAPLATVNGEKIGQQEFDSAM 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q+ + + G + + +LD LV+ + + +GL +V I Sbjct: 58 NQQQQRVREMAGANFDPAFFDKPEIKFSLLDRLVTQHLMAMEAKKVGLSITDEQVGQIIV 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-GGMRPSNLLL 179 F +D +F + + L +G + + + + + G P ++ Sbjct: 118 NIGAFQ-QDGRFDRQRYEAVLRDKGKTPSGFDAEIRQAVLLQQLTESYTQNGYAPESI-- 174 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRAPEYKRISYIL 236 A++ N + + + A S+ +++++ K ++ PE ++ Y++ Sbjct: 175 --AEKLIHLNEQQRVVAIADLDAAAFVKQVKLSDGAVSEYYNKNLQEFQLPERAQVQYVV 232 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294 ++++ ++E++ YE+++ + + E R ++ K+A +A + + K Sbjct: 233 LSSDSLLSQVKVRDEEVKQYYEEHQADFGTQEQRHAAHILITVPKQASDAEKQAARTKAE 292 Query: 295 -----------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KF LA ++ G + + LG F + + DS+FSL K G + Sbjct: 293 QILKLVKQSPAKFAALAKQYSQDPGSASNGGDLGEFGRGAMVK-PFEDSVFSL-KVGQVS 350 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 ++ FGY I + +KP+ + EV+ I Q+++ +A++ E ++ Sbjct: 351 DLVQTDFGYHIIKLIAVKPAKIQALAEVRDMIIQQLKLQRANDMFAELAEK------FNN 404 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDV-------KGKEVAAIPYKEQLLFRVFGKDDPLSK 452 ++ E S K P + A V KG+ A + + +++L VF D +K Sbjct: 405 TVYEQSDSLK------PAAELAKLSVQQGVWLSKGQPPAGL-WTDKVLQAVFSDDAIKNK 457 Query: 453 DHTVALPDG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 +T AL G + ++ + PA R L EV +++ ++ +E Sbjct: 458 RNTAALEVGPNKLLAARVTDYKPASVRPLTEVSAAIQQKLLQLQASE 504 >gi|189184244|ref|YP_001938029.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str. Ikeda] gi|189181015|dbj|BAG40795.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str. Ikeda] Length = 517 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 86/394 (21%), Positives = 167/394 (42%), Gaps = 42/394 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59 ML +R AS + KI +++L + + W + S + SS +V+ + K + S F+ + Sbjct: 1 MLNKLRTASHSIAFKILILILILASVFWSIGTMFHSSNNSSDIVTFTKAKNITKSEFMQA 60 Query: 60 WKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K + I Q NS++ + + +L NL+S L+Q + L V+ Sbjct: 61 LKLAMHQIPQ------NSDQNLLTQNNIRELVLSNLISTHVLEQLAHEYNLTLSTAAVFK 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I S F+ N F ++F + L I+E +Y D K ++ F+ ++ Sbjct: 115 FIQNSKAFNNNQN-FDINIFRNILKNLHISEPQYFDQAAKQQLSEILLRQFINNNYVPSI 173 Query: 178 LLDQAKRFYFENRSVDYIV--LNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISY 234 L E R++ + L N + + D PS+ L +++ + + PE + ISY Sbjct: 174 LTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFEKPEQRHISY 233 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKY-----FSPEIRTVEQLVFPNQKEADEAFQS 289 I+ D + + K+ + N L+ Y + +++ F+ I V + +Q D+ F Sbjct: 234 IVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTKNIAEVREKYVNHQ--VDKLFND 291 Query: 290 LKKGKKFIQLAEEQGKSLSD------------ISLGSFSKEYIPD----VSLADSIFSLA 333 I L E++ S S+ ++L + +K+ + + ++ D+IF+L Sbjct: 292 T------ITLLEDEVASGSNSSEIAKMLNVKLLTLNNVTKQKLANNKILSNVTDAIFALE 345 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + P+ S +I + I P+ F V Sbjct: 346 EHETSYPLDVSSKMLIIVSIQKIIPTAVEKFDNV 379 >gi|108758423|ref|YP_630863.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622] gi|108462303|gb|ABF87488.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622] Length = 524 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 162/391 (41%), Gaps = 72/391 (18%) Query: 16 IFLVVLFVPF-LIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQK 70 +F++ + V F L +G + F +G +T V SV +++P F +W Q++ + + Sbjct: 16 LFIIGIAVVFTLQFGPGSSGFGATGGATAPGSVASVNGKEIPLRDFAAAWAQQMSFLRSQ 75 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G V AR G+ ++LD LV+ L Q E G+ A + I ++ F KD Sbjct: 76 -GSPVPESLARQFGMHNQVLDRLVNTELLAQAAERHGIAASDDELRKLIHQNTDFQ-KDG 133 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 +F + + L K D + L R + +R + ++ D R FE Sbjct: 134 QFDFERYQQVL--RDFYRKSPQD-FEAELRRQLAAQKMMDVVRGNAVVSDDEVRARFEKE 190 Query: 191 SVDYIVLNNRHVPA-----IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 V+ R +PA + P+ A L +W + HEK Sbjct: 191 GNQAKVVFARFLPAMYADKVPSPTAAQLAEWKK--------------------AHEK--- 227 Query: 246 IEISNDELQAEYEKNKEKYFSPE-IRTVEQLV-FPNQKEAD------EAFQSLKK----G 293 +++ +E N+ Y PE IR + LV P + AD E Q+L+K G Sbjct: 228 ------DIKEYFEANRFVYQQPERIRARQVLVKLPPEATADQKKAALEKAQALRKEIEGG 281 Query: 294 KKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K F Q+A + +G L + GS+ + +LAD+ F+L K+G+ T + Sbjct: 282 KDFAQVARDSSEDPGSKARGGDLGWVERGSW------EPALADAAFAL-KQGEVTQPVET 334 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 FG + V + + ++V+ +IA + Sbjct: 335 KFGVHLVKVDEKQAAQDKKLEDVQDEIATTL 365 >gi|126439578|ref|YP_001059347.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 668] gi|126219071|gb|ABN82577.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 668] Length = 644 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA +R Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395 >gi|121601506|ref|YP_993264.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei SAVP1] gi|124383444|ref|YP_001029291.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10229] gi|126449228|ref|YP_001080774.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10247] gi|167738127|ref|ZP_02410901.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia pseudomallei 14] gi|217421364|ref|ZP_03452868.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 576] gi|237812671|ref|YP_002897122.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei MSHR346] gi|251766653|ref|ZP_04819742.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei PRL-20] gi|254179433|ref|ZP_04886032.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1655] gi|254198164|ref|ZP_04904586.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei S13] gi|254297318|ref|ZP_04964771.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 406e] gi|254358198|ref|ZP_04974471.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei 2002721280] gi|121230316|gb|ABM52834.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei SAVP1] gi|124291464|gb|ABN00733.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10229] gi|126242098|gb|ABO05191.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10247] gi|148027325|gb|EDK85346.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei 2002721280] gi|157806973|gb|EDO84143.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 406e] gi|169654905|gb|EDS87598.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei S13] gi|184209973|gb|EDU07016.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1655] gi|217395106|gb|EEC35124.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 576] gi|237505475|gb|ACQ97793.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei MSHR346] gi|243065067|gb|EES47253.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei PRL-20] Length = 644 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA +R Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395 >gi|126452826|ref|YP_001066614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106a] gi|242317337|ref|ZP_04816353.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106b] gi|126226468|gb|ABN90008.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106a] gi|242140576|gb|EES26978.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106b] Length = 644 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA +R Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395 >gi|53719046|ref|YP_108032.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei K96243] gi|76809896|ref|YP_333865.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710b] gi|254189176|ref|ZP_04895687.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei Pasteur 52237] gi|254259824|ref|ZP_04950878.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710a] gi|52209460|emb|CAH35412.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei K96243] gi|76579349|gb|ABA48824.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710b] gi|157936855|gb|EDO92525.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei Pasteur 52237] gi|254218513|gb|EET07897.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710a] Length = 644 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA +R Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395 >gi|329894935|ref|ZP_08270734.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC3088] gi|328922664|gb|EGG29999.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC3088] Length = 624 Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 115/547 (21%), Positives = 222/547 (40%), Gaps = 50/547 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR--QKVPFSSFIN 58 ML+ IR +++ V K+ + ++ + F ++G+ L S S + G + V N Sbjct: 1 MLQDIRNSTQGPVFKVIVGLIVLSFALFGVESILLGGSDDSVALVNGDKIRAVEVQQAAN 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 KQ+ I+ +G + L + L+ LV Q+ E +GL A ++ + Sbjct: 61 RQKQQ---IAAMLGENFDPSLIDDAQLSARALEGLVGNKLQQQWAESLGLTASDVQLGAQ 117 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGIN-----EKEYIDHYTKMLSRTDVVGMFVGGMR 173 +A P F D KFS +++ LA G E +D K L+ + FV G Sbjct: 118 VAAIPAFQ-IDGKFSAELYKQSLAAAGFTPLTFREALRVDEIVKQLNGGLLASEFVTGAE 176 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 L R E RSV Y + + + + +++ + + E + Sbjct: 177 ARAL-----ARVNGETRSVRYAKVAGDRFQNTVEITQDQIQAYYDSNAAQFVSEEAVVLD 231 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAF----- 287 YI + + ++ +L+A YE+ Y + E R L+ EADEA+ Sbjct: 232 YITLRADDFVEP--VAEADLRAAYEQEISSYAYQDEARVSHILLIQGDDEADEAYAQRIQ 289 Query: 288 ---QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +L G+ F +AE + G S LG + + P + ++I L P Sbjct: 290 SAQTALTDGEAFSVVAERLSDDIGSSSDGGDLGYTAGDVFP-AEMEEAIKGLDINEVSGP 348 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V+ + ++I V++ + S SF E++ ++ + A ++ + L++ T Sbjct: 349 VLTDAGTHLIT-VTDRRSSEPPSFMEMRSELEASLSQADAQRRLVSQVEALKDLTYTATD 407 Query: 401 MDEISRREKIVSIDL----PLVDFAGKDVKGKE-VAAIPYKEQLLFRVFGKDDPLSKDHT 455 + E + + + +D+ P+ G+ V G + V A + + ++ + + +S++ Sbjct: 408 LREPA---QTLGLDVVRSGPITRRGGQGVLGDDRVIAAAFSDLVIEEGWSEVIEVSENAF 464 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 VAL ++ E PA + +E+V +D T + EE +L+ G+ Sbjct: 465 VAL--------KLVEHQPAAPQSIEQV-SDRIVSVLTAQAEEEALRAFGNELLDQLAGGR 515 Query: 516 NFRDIGK 522 DI + Sbjct: 516 TIEDIAQ 522 >gi|226197150|ref|ZP_03792727.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pakistan 9] gi|225930529|gb|EEH26539.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pakistan 9] Length = 644 Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 77/407 (18%), Positives = 158/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA +R Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKRLAEVKDSIATDLR 395 >gi|113867510|ref|YP_725999.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] gi|113526286|emb|CAJ92631.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] Length = 644 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 106/479 (22%), Positives = 190/479 (39%), Gaps = 65/479 (13%) Query: 69 QKIGFVV--NSERARSV-----------GLD--KKILDNLVSGATLDQFIEDIGLEADHG 113 Q+I VV SERAR V G D K +LD L+ + + L Sbjct: 53 QEIDNVVRDQSERARQVLGASYDPRQFEGPDARKAVLDQLILQRVMASAVAREHLTVSDA 112 Query: 114 RVWGEIARSP----LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 ++ EI+ P L KD K ++ L +G+ +++ D + T +G V Sbjct: 113 KLLEEISNLPAIAQLPRTKDGKVDDKAYLQLLQSQGMTPEQF-DARMRFELATQQLGASV 171 Query: 170 GGMR--PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 P +LL D+ + R V ++ A P A L +++ ++ + P Sbjct: 172 AATAFVPKSLL-DRLIAVRDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQAFSVP 230 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E ++ Y+L ++ +EL++ Y+ N ++ E R ++ K+A A Sbjct: 231 EQAKVEYLLLSGEALAATQAVTPEELKSYYDSNIARFRIDEQRRASHILISAPKDAPAAQ 290 Query: 288 QSLKKGKK-------------FIQLAE---------EQGKSLSDISLGSFSKEYIPDVSL 325 + K K F +A E+G L + G+ K + Sbjct: 291 RQAAKDKATKLLEDLRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKPF------ 344 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++++L K G + V+ +GY I ++ IKP+ T + V+ ++ ++R K Sbjct: 345 EDAMYAL-KDGQVSDVVETDYGYHIIKLTGIKPAETKPLEAVRTELEAELR------KQF 397 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI----PYKEQLLF 441 D K E+ A G ++ E + K + L +V + A+ P L Sbjct: 398 ADKKFAEQADAFGNTVYEQADSLKPAADKFKLTIQTADNVTRQPNPALGAQSPLNNDKLL 457 Query: 442 RVFGKDDPL-SKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + DD + +K +T V + + + +I E PA RK EEV V++ + + AE Sbjct: 458 KALFSDDAIKNKRNTEAVQVAPNTLVAARIVEYRPAAVRKFEEVEAKVREGYIAQQAAE 516 >gi|33597580|ref|NP_885223.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis 12822] gi|33574008|emb|CAE38331.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis] Length = 671 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/277 (19%), Positives = 116/277 (41%), Gaps = 2/277 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F + Sbjct: 21 MFEIIR-THRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q++G + + + +++L+ L+ L D G G + IA Sbjct: 80 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ + Sbjct: 140 AIPQVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ ++ R PE + Y++ D Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + +++ ++++ + YE+NK ++ PE R V ++ Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMI 295 >gi|206560356|ref|YP_002231120.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] gi|198036397|emb|CAR52293.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] Length = 644 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/369 (19%), Positives = 146/369 (39%), Gaps = 32/369 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V L + + R V +VL A P++A LT + Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + + +++ Y+ N + + ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ FSL K+GD + ++ G+ I + +KP+ F EVK IA Sbjct: 338 STAGGKAFD----DAAFSL-KQGDVSGIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAI 392 Query: 374 QMRITKASE 382 ++ AS+ Sbjct: 393 DLKQQYASK 401 >gi|33601983|ref|NP_889543.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica RB50] gi|33576421|emb|CAE33499.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica RB50] Length = 671 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/277 (19%), Positives = 116/277 (41%), Gaps = 2/277 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F + Sbjct: 21 MFEIIR-THRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q++G + + + +++L+ L+ L D G G + IA Sbjct: 80 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ + Sbjct: 140 AIPQVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ ++ R PE + Y++ D Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + +++ ++++ + YE+NK ++ PE R V ++ Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMI 295 >gi|153837998|ref|ZP_01990665.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus AQ3810] gi|149748606|gb|EDM59465.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus AQ3810] Length = 459 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 102/215 (47%), Gaps = 7/215 (3%) Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + + + R + + ++ + ++ + +++ DN+ PE ++SY+ + Sbjct: 25 KLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVELSAEALK 84 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--ADEAFQSLKKGKKFIQLAE 301 K+I++++++++ Y+++ +KY S E R V ++ E A L G F +A+ Sbjct: 85 KQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADFAAVAQ 144 Query: 302 EQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 E+ G + + LG ++ + D + ++ F+L GD + ++ FGY I + +K Sbjct: 145 EKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFGYHIIKLEELK 203 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + F EV +I ++ KA ++ E LE Sbjct: 204 DAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELE 238 >gi|254294057|ref|YP_003060080.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814] gi|254042588|gb|ACT59383.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814] Length = 634 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 82/431 (19%), Positives = 178/431 (41%), Gaps = 13/431 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML I+R+ R+ + + + +L V GL D +FS S ++S G + + N Sbjct: 1 MLSIVRRMVRSKLMLVVIGLLIVGLAGMGLPD-MFSSSEPRGMISAGDRFIVKRDIDNRI 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 L + + G ++ + A G+ ++IL ++ S L F + + A V + Sbjct: 60 DTYLRSVRESEGRTISRQEAAKAGVIQQILQSVASETALLAFADKEKISASRYAVTDMVV 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P F D AR +G++ ++ + + +R + G+ + L Sbjct: 120 NAPRFKNAVTGEFDDASFKDFARLQGLSVRQLETNLKESFTREYIADAVSTGVNTPDALG 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E R Y+ + N P++ + ++E+ K + P+ K +S + Sbjct: 180 KVWITSQSEQREFSYVKIPNDVSDEGILPTDEEVAAFYEENKTAFTQPKRKALSILSISP 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +EI L+ EY+ +++ SPE R +++ +++ +A + G Sbjct: 240 IDFIGSVEIPETVLKDEYDLRIKEFSSPESREIKEFSSSDRRLVQQAVDEIGAGGDV--- 296 Query: 300 AEEQGKSLSDISLGS--FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 E SL D+ + + +++ I D A + F + + F G + A+V I Sbjct: 297 -ETVLSSLPDLVVTTKIVTRDQISDEEYAKTAFIVPEDTHFGVFELGEGNWTGAYVDTIY 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P F+ V I ++ A + + + + +F+ G +++E + ++ +PL Sbjct: 356 PGTPKPFETVSDQIFTELATVAAEQIFERKQEEMFDFVGGGFNLEEAAD-----ALGVPL 410 Query: 418 VDFAGKDVKGK 428 + ++ D +G+ Sbjct: 411 MKYSAIDAQGR 421 >gi|262370474|ref|ZP_06063800.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046] gi|262314816|gb|EEY95857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046] Length = 621 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 104/519 (20%), Positives = 209/519 (40%), Gaps = 63/519 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E RK + W+ K L++ P + G+ + FS V SV Q + + Sbjct: 1 MESFRKVIKGWLGKALLILFLTPLALVGI-EGYFSSGSKDAVKSVNGQDISEKELETLTA 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 S+K++ + ++N + K +D L++ L Q E +G+ ++ Sbjct: 60 SFKEQFLAYANGDETLLNQSF-----IKDKAMDQLIANTLLLQQAEKLGISLSDTQIEQM 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGMR 173 IA+ P F ++ KFS + S L G++ + DH KM+ T FV Sbjct: 115 IAQQPSFQ-ENGKFSETRYSSYLQSVGMSSDALVANLRQDHALKMMRST-----FVDYAL 168 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 S L + Q E R+V + +N S + +++++ ++ + Sbjct: 169 VSKLDIQQIANLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDVD 228 Query: 234 YILF-DVHEKEKKIEISNDELQAEYEK---NKEKYFSPEIRTVEQLVFPN-------QKE 282 Y+L + +++ ELQ Y + ++ +P ++ + L+ + +K Sbjct: 229 YVLLAPANVPAAASPVTDAELQQAYTQFVEAQKDNVAPLVKHI--LITTDARTDAEAKKR 286 Query: 283 ADEAFQSLKKGKKFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 A+E +K G F Q +E+ + +L ++K D + ++ SL K G Sbjct: 287 AEEVVAKIKAGTSFAAAAAQYSEDTASKANGGALAVYNKGTFGD-AFDQAVASL-KSGQV 344 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + FGY + + P+ + SF+ K + +++ K + + L E + Sbjct: 345 SAPVKTEFGYHV--IETDAPAVKLPSFENEKARLTAEVQKNKTANAFSDTVNSLNELVVD 402 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV---------AAIPYKEQLLFRVFGKDD 448 ++D +S+ K V + + VKG + AA+ K LF K+ Sbjct: 403 SDALDVVSQEVKGVQV---------QTVKGMTLSTQHPVLSNAAVKVK---LFNDDVKNG 450 Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + ++ LP+G +W ++++ A + L+E VK Sbjct: 451 DRNATSSIQLPNGDVVWAKVRDYHAAGVQTLQEATPRVK 489 >gi|88703271|ref|ZP_01100987.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis KT71] gi|88701985|gb|EAQ99088.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis KT71] Length = 622 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 97/411 (23%), Positives = 183/411 (44%), Gaps = 37/411 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINS 59 ML+ IR ++ VAKI + ++ + F I+G+ LFS GS V V G + PF + Sbjct: 1 MLQDIRANAQGTVAKIIIGLIVISFSIFGIESLLFS-GGSDGVAEVNGEEITPF-----A 54 Query: 60 WKQELGMISQKIGFVVNSERARSVGLD-----KKILDNLVSGATLDQFIEDIGLEADHGR 114 +QE+ + Q+ + E A LD ++ L+ L+ + Q D+ L Sbjct: 55 LQQEVS-VQQRRLLSILGENADPALLDQAQLSQQALETLIQREIIKQAAADLELTTSDQA 113 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I F D +FS D+F S LA G + + LS +G G+ Sbjct: 114 LADIIGSMGQFQ-IDGQFSPDMFQSALASAGFTPA----LFRERLSEDVEIGQLRAGIAG 168 Query: 175 SNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S+ L+ A E R V Y+ L A + S+ + ++ + +++ E Sbjct: 169 SDFTTAAELELASAIALEGRDVRYVSLPLIDFMASVEVSDEAVEAFYNDNPERFQSEEQL 228 Query: 231 RISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKE----AD 284 + Y+ + ++ IE I + ++ E+E ++++ + E R LV + +E Sbjct: 229 VLEYVEITL---DRYIEDIDEERVREEFELVRDEFELATEARVSHILVEGDDEERAARIA 285 Query: 285 EAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 EA +L G F + A E G S + LG + + P+ ++ D++ +LA G+ + Sbjct: 286 EAQAALDAGMSFAEAAAEYSDDIGSSQFEGDLGYTAGDTFPE-AMEDAVANLA-VGERSA 343 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + G + V++ + VSF+EV +++ +++ A+ ++ D +RL Sbjct: 344 PVETEAGTHLLLVTDRREGSNVSFEEVAEELEDRIARRDAAAELLSDVERL 394 >gi|255318960|ref|ZP_05360185.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SK82] gi|262378304|ref|ZP_06071461.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SH164] gi|255303977|gb|EET83169.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SK82] gi|262299589|gb|EEY87501.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SH164] Length = 623 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 95/508 (18%), Positives = 201/508 (39%), Gaps = 39/508 (7%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E RK + W+ + L++ P G+ + + +V Q++ S Sbjct: 1 MESFRKVIKGWLGIVLLILFLTPLAFVGIEGYFSGGNKENVAATVNGQEISKKELESLTK 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+K+ Q + FV E + + + LD+L++ + Q E +G+ ++ Sbjct: 61 SYKE------QYLNFVNGDETLLNQPFIQQTALDHLIAQNLILQQAEKLGISLSDAQIEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P F ++ +FS ++ + L G+ + I DH KML+ T FV Sbjct: 115 MLAQQPSFQ-QNGQFSQTLYENYLRSVGLTSQGLIANLRQDHALKMLNST-----FVDYT 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S + ++Q E R++ + S + +++K+K++++ + + Sbjct: 169 LVSKVDMNQIANLQTEQRTLFLSSIPLDEYKKNIQVSQQDIANYYQKHKNSFKQTAHVDV 228 Query: 233 SYILFDVHE-KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKE 282 YI+ + K +++ ELQ Y E R V+ ++ QK Sbjct: 229 DYIVLSPEQVNTKAAPVTDAELQQAYANFVEAQNKNAKREVKHILIATSDTRNENQAQKL 288 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFT 339 A+E + ++ G F Q A + + + G + Y V + ++ L K + Sbjct: 289 ANEVYAKIQGGTNFAQAAAQYSDDIDSKTKGGLIESYQTGVYSEAFDKAVLGL-KANQIS 347 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + +GY I + + SF+ K +A +++ +K + + L E + Sbjct: 348 QPVKTQYGYHIIQAQTLAQNIP-SFEAEKSRLAAEIQKSKVANLFTDTVNSLNEMVVSSD 406 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+D + + K I+ V G + + V P + +F K+ + + L Sbjct: 407 SLDVVPQEIKGTRIE--TVKNVGLNTR-HPVLNDPSVKARIFNEDVKNGDRNVTSNLQLA 463 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVK 487 G +WV++++ P + L + +K Sbjct: 464 TGEAVWVKVRDYQPEGVQSLAQATPAIK 491 >gi|152990310|ref|YP_001356032.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2] gi|151422171|dbj|BAF69675.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2] Length = 272 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 18/161 (11%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG------KKFIQL 299 I++++ E +A Y+KN +K+ PE+ ++ ++KEA + LKK +KFI+L Sbjct: 109 IKVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINELKKTPKNQLKQKFIEL 168 Query: 300 AEEQ-----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAH 352 A+ + GK D LG F K + +D+ FSL K G FT PV FGY I + Sbjct: 169 AKTKSVGPSGKRGGD--LGFFKKGQMVK-PFSDAAFSL-KPGTFTTKPV-QTQFGYHIIY 223 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 V KP+ T+ F ++K I Q+++ K E V+++ ++L++ Sbjct: 224 VEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQKEAEKLKK 264 >gi|170702053|ref|ZP_02892969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria IOP40-10] gi|170133039|gb|EDT01451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria IOP40-10] Length = 644 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/363 (19%), Positives = 144/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V + + R V +VL A P++A LT + Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLKTGDYAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + S ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKDSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+GD + V+ G+ I + +KPS F +VK IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSVVKPFADVKDHIAV 392 Query: 374 QMR 376 Q++ Sbjct: 393 QLK 395 >gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas arsenicoxydans] gi|133738857|emb|CAL61904.1| putative peptidyl-prolyl cis-trans isomerase D, ppiD-like [Herminiimonas arsenicoxydans] Length = 636 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 21/393 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R + + L+++ F GL S+TV V Q + + + Sbjct: 1 MFEFIR-THRRLMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQ 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ Q G +++ + ++IL+NL++ L + L + I Sbjct: 60 REQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIV 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 D KF + + + LA +G+ Y + L+ V + L Sbjct: 120 NMGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAK 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R V + ++ +L ++EK + + PE + Y++ Sbjct: 180 RLSELGEQEREVQQLAFKTSDYAGQVKVTDDMLKSYYEK-SNQFNVPEQVKAEYVVLTAD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288 +I +S+ ++++ YE+N + Y E R ++ K+A +A Sbjct: 239 ALAAQINVSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLA 298 Query: 289 SLKKG-KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +L K ++F +LA+E G + LG F K + ++ F L K+G+ + ++ Sbjct: 299 TLHKNPQEFAKLAKENSSDTGSAERGGDLGFFGKGMMVK-PFEEAAFKL-KQGELSDLVQ 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +G+ I ++ IKP+ + EVK +IA+ +R Sbjct: 357 SDYGFHIIKLTAIKPASIKTLDEVKNEIASDIR 389 >gi|146307082|ref|YP_001187547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] gi|145575283|gb|ABP84815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] Length = 615 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 77/406 (18%), Positives = 172/406 (42%), Gaps = 24/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR SR W+AKI + ++ + G + S + V + + + Sbjct: 1 MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAAEVNGDTITLNELNTAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++G ++ L + L L+ L Q D + I Sbjct: 61 EMQRRQLLQQLGRDFDASLLDDKLLREASLKGLIERKLLLQAAGDADFAFSQAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D +F F + + G + ++ +ML ++G G+ S+ + + Sbjct: 121 QTPEFQ-VDGRFDAARFDQVIRQMGYSRLQF----RQMLEEEMLIGQLRAGLGASSFVTE 175 Query: 181 QAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q R + E ++ D+ + + PA + +++ + +++++ + +PE + Y+ + Sbjct: 176 QDARAFANLERQTRDFASVTIKADPAAVELADSDVQAYYDEHASEFMSPEQVVLEYV--E 233 Query: 239 VHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLK 291 +H+ +IE+S+D+LQ YE E E R ++ A +E + Sbjct: 234 LHKDSFFDQIEVSDDDLQPLYE--SEIANLAEQRQAAHILIEGDDAAARTKIEEIKARVD 291 Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA E+ G + LG ++ + D + +++++L + G + + FG Sbjct: 292 AGEDFAALAKEFSEDPGSAADGGDLG-YAGPGVYDPAFEEALYAL-QTGQVSEPVRSDFG 349 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + + ++ SF +K +A + + ++ E K+LE+ Sbjct: 350 WHLIKLLGVQAPEVPSFDSLKDKLARDFKAQQVEQRFVEATKQLED 395 >gi|94987556|ref|YP_595489.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis PHE/MN1-00] gi|94731805|emb|CAJ55168.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis PHE/MN1-00] Length = 629 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 151/696 (21%), Positives = 267/696 (38%), Gaps = 142/696 (20%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV--VSVGRQKVPFSSFIN 58 ML+ IR +++W KI ++ + F+ WG+ ++SG V VSV Q + Sbjct: 1 MLDFIRSNAQSWGVKIAFGLIIIVFIFWGIG----TLSGGPEVEVVSVNGQSITIQELQK 56 Query: 59 SWKQELGMISQKIGFV----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 ++ I Q + +N+ R + + + IL+ LV Q IGL Sbjct: 57 RCEEIEQNIRQNFPTISAAEINTFRIKQLATQQLILETLVL-----QEANRIGLIITPIE 111 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + I P FH + KF +++ L R D G F +R Sbjct: 112 LRKTIESFPAFHNTEGKFDPAIYLQFLKE-----------------RNDTPGHFESQIR- 153 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 +NLL+++ ++ E + YI P+ A +E + I Y Sbjct: 154 TNLLINKIQQ---EITAGAYI-----------SPTEAYDVYMYESAT--------RTIQY 191 Query: 235 ILFDVHEKEKKIEISND-----------------ELQAE--------------------- 256 +LF + K+ IS D EL E Sbjct: 192 LLFPTEDYLNKVNISADEVAKFYNESSEQFKTPTELNLEYLLITPRSLANNQTIDDTTVS 251 Query: 257 --YEKNKEKYFSPE-IRTVEQLVFP-----------NQKEADEAFQSLKKGKKFIQLAE- 301 Y+K+KE + SPE I +VF Q++ ++A ++KKG+ F +A+ Sbjct: 252 EYYQKHKEDFKSPEQIHAQHIVVFAPENSEPEVLKKAQEKINQAANAIKKGEDFSSVAKK 311 Query: 302 --EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + + LG F+ E +P + AD FSL G+ + I GY I + + KP Sbjct: 312 FSQDNVAQNGGDLGWFTYEQAVP--AFADVAFSLT-PGEISQPIQTPVGYHIIKLIDKKP 368 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 SF EV K I ++ KAS ++++ + ++ L S+ E + + I L Sbjct: 369 EEIKSFDEVSKTIQQRLAEDKASIELQDVLENVQLALIENKSLTEAGKPYNLSPISTGL- 427 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 F KD+ + A P + L V P + + Y+ +++K+ P + Sbjct: 428 -FPIKDIASQLELAKPDELSKLTHV----SPGTILENPLITKTGYVIIKVKDIKPESIKS 482 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQINR 536 +E V + K K A E++ KA + L K + KNL S ++ + I Sbjct: 483 IEVVENQISSLLKKQK-ANELAMKAAEEQLTILKNSSIPPAVAKNLKTSPAIIRSATIEN 541 Query: 537 MDN----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----K 587 + N + F G + + +E G+ ++ V+ V P +E K Sbjct: 542 LKNPQLVPDTFKATPG--------SWLTTPYTVEQGV--LIAYVSKEVVYPSKEQWDNIK 591 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + F+S + + + + + L+ Q +T+ + I Sbjct: 592 EAFMSAIVKSKREQMFKGFLTMLEKQAKITIKEEKI 627 >gi|325265616|ref|ZP_08132306.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC 33394] gi|324982886|gb|EGC18508.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC 33394] Length = 608 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 74/342 (21%), Positives = 150/342 (43%), Gaps = 32/342 (9%) Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 V NS+ + +++ LV A L + + +G+ ++ I +P+FH + KFS Sbjct: 57 VRNSQASGGSASREEVFQTLVQRAYLMEGAKALGIAVSDTQIKQGIVDAPIFHDEQGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRF---YFEN 189 + F + L ++E ++ + L+ ++ M SN++ QA+R+ Sbjct: 117 PERFQTFLKNNHLSESAFMQMERERLTLVSLLQML-----NSNVVTSGQAERYIQTQMAE 171 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R + V N + A +A L ++++ +K NY + Y++ + K +S Sbjct: 172 RVIRTSVFNPENYAAQVKAGDAELQKYYDAHKSNYAVAPGVKYEYMVVSPKDLVDKQTVS 231 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KF 296 +E+QA K P R + ++ K AD A + + + KF Sbjct: 232 AEEVQAAL-KTATTNQKP-TRRIAHIMINAPKSADAATRQKAREQAEKIAQEAKASPDKF 289 Query: 297 IQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA ++ G + + LG+ ++ +P L D+ F LA +G + V+ FGY I Sbjct: 290 AELAKQYSQDTGSAQNGGDLGALTQGSLPAKPLDDAAFKLA-QGAVSDVVETDFGYHIVR 348 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V I+ + + QE + + ++++ KA + ++ + + EF Sbjct: 349 VLEIQGN-DAAAQEAR--VRQELQLKKAQQAYEKIREEIAEF 387 >gi|70731342|ref|YP_261083.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens Pf-5] gi|68345641|gb|AAY93247.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens Pf-5] Length = 623 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 87/408 (21%), Positives = 175/408 (42%), Gaps = 24/408 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + V+ + G DA+F + + + V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALLALTGF-DAIFKATTHNQDAAKVNGEEITQNELSQA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q++G ++ L + L L+ L Q +D G + I Sbjct: 60 VDMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIDRKLLLQGAQDSKFAFSEGALDQVI 119 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KFS + F + + G + + +ML++ ++G G+ S + Sbjct: 120 LQTPEFQ-VDGKFSPERFDQVIRQLGYTRLQ----FRQMLTQEMLIGQVRAGLAGSGFVT 174 Query: 180 DQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 D A+ F E ++ D+ L + PA ++ + +++++ + P+ I YI Sbjct: 175 D-AQVLAFARLEKQTRDFASLTIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIE 233 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA------DEAFQ 288 ++ + +++LQA Y+K S + R L+ N K EA +E Sbjct: 234 LKKAAFFDQVSVKDEDLQALYQKEIAN-LSEQRRAAHILIEVNDKVNEAQAKAKIEEIQA 292 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L KG+ F LA+E + S G F+ + D + ++++L K PV G Sbjct: 293 RLAKGESFEALAKEFSQDPGSASNGGDLGFAGPGVYDPTFEKALYALNKDQVSAPVRTG- 351 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG+ + + ++ SF +K + ++ + ++ E K+LE+ Sbjct: 352 FGFHLIKLLGVEAPEVPSFASLKGKLTRDLKTQQVEQRFVEATKQLED 399 >gi|312961785|ref|ZP_07776283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens WH6] gi|311284044|gb|EFQ62627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens WH6] Length = 624 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 91/418 (21%), Positives = 189/418 (45%), Gaps = 43/418 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58 ML+ IR S+ W+AK + ++ G+ +A+F SG++ V V + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGI-EAIFQASGTNKQDVAKVNGEAITQPELSQ 59 Query: 59 SWKQELGMISQKIG-----FVVNSERARSVGLDKKILDN--LVSGATLDQFIEDIGL-EA 110 + + + Q++G +++ + R L K ++D L+ GA +F G EA Sbjct: 60 AVDMQRRQLMQQLGKDFDASLLDEKLLRDAAL-KGLIDRKLLLQGAADSKF----GFSEA 114 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 +V I ++P F D KF+ + F + + G + ++ +ML++ ++G Sbjct: 115 ALDQV---ILQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQF----RQMLTQEMLIGQVRA 166 Query: 171 GMRPSNLLLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 G+ S + D A+ F E ++ D+ +N + PA ++ + +++++ + P Sbjct: 167 GIAGSGFVTD-AEVLAFARLEKQTRDFATVNLKANPAAVKLTDDEVKAYYDQHAKEFMTP 225 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA-- 283 + I Y+ ++ + +DELQA YEK + + R L+ N K EA Sbjct: 226 DQVVIDYLELKKSSFFDQVTVKDDELQAAYEKETAN-LAEQRRAAHILIEVNDKVTEAQA 284 Query: 284 ----DEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +E L KG+KF LA+E G + + LG F+ + D ++++L K+ Sbjct: 285 KAKIEEIQARLAKGEKFDALAKEFSQDPGSANNGGDLG-FAGPGVYDPDFETALYAL-KQ 342 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + +FG+ + + ++ +F +K + +++ + ++ E K+LE+ Sbjct: 343 DQVSAPVRSTFGWHLIKLLGVEAPEVPTFASLKDKLTRELKAQQVEQRFVEATKQLED 400 >gi|53723660|ref|YP_103105.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC 23344] gi|67642012|ref|ZP_00440775.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8 horse 4] gi|254177616|ref|ZP_04884271.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC 10399] gi|254200054|ref|ZP_04906420.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei FMH] gi|254206388|ref|ZP_04912740.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei JHU] gi|52427083|gb|AAU47676.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia mallei ATCC 23344] gi|147749650|gb|EDK56724.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei FMH] gi|147753831|gb|EDK60896.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei JHU] gi|160698655|gb|EDP88625.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC 10399] gi|238523056|gb|EEP86497.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8 horse 4] Length = 644 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 76/407 (18%), Positives = 157/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSTSDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA +R Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLR 395 >gi|298368785|ref|ZP_06980103.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014 str. F0314] gi|298282788|gb|EFI24275.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014 str. F0314] Length = 610 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 110/518 (21%), Positives = 208/518 (40%), Gaps = 64/518 (12%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+S + S +V VG QK+ +L + Q I Sbjct: 12 AQILLGLIALTFVGFGVS--TVANPDSDYIVKVGNQKI--------SDHDLNLAMQNIQ- 60 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 E+ R + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 61 ASGGEQPRDA-----VFQSLLQRAYLTQGAKQMGIAVSQEQIKQIIVDDPSFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + L + ++E ++++ ++ + G S++ Q R+V Sbjct: 116 QALLTQYLNQRRMSEDQFVEEIRDQFLFQNLQNLVQNGTIVSDVQAAQLVNIAQATRTVR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + N +A+L ++++ K +Y P+ +I + K +S+ EL Sbjct: 176 SVTFNPEAFAGQIKVDDAILQRYYDANKKDYIIPQAVKIELVALTTQALADKQTVSDAEL 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-----------SLKKGKK--FIQLA 300 + ++K P R + ++FP ++A + ++ K K F LA Sbjct: 236 RQAFDK------LPPRREIAHILFPVAQDASAEERAAAKAEAEKVLAMVKAKPSDFPALA 289 Query: 301 EEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ K + S LG K+ ++ FS+ +KG+ + V+ ++GY I + NI Sbjct: 290 KQYSKDPASASNGGNLGFMPKDGGLGAEFENAAFSM-QKGEISNVVQTAYGYHIIKILNI 348 Query: 357 --KPSF---TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 KP F ++ K A EK+ E A + + ++ K + Sbjct: 349 QDKPVFEQEKAELEKELKLKKAAAGFNAAKEKLGE---------AAFNNPNSLAEAAKAL 399 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT---VALPDGSYMWVQI 468 +++ L D G AA ++L+ VF DD L K H + + D + V++ Sbjct: 400 GLEVKLSDEWLTKANG---AAAGMPQELINAVFS-DDVLKKKHNSEPITINDNTVWVVRV 455 Query: 469 KESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKA 503 KE R EV DV+ + + VK AE+ + A Sbjct: 456 KEVREERTAPFAEVKDDVRAAYLRSEAVKLAEKKARAA 493 >gi|295698384|ref|YP_003603039.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola USDA] gi|291157251|gb|ADD79696.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola USDA] Length = 622 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/315 (22%), Positives = 148/315 (46%), Gaps = 19/315 (6%) Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 ++L+ L+ L Q+ +G++ ++ EI +F ++ KF + S L R I+ Sbjct: 80 QVLNKLIQETLLSQYSMKLGIKVSEDKIKEEIRNLSIFQ-ENGKFDKRKYKSFLLRNQIS 138 Query: 148 EKEYIDHYTK-MLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 K K L++ + F+ + PS L + +F F+ R + + L + Sbjct: 139 GKTLSQEIKKNFLTKKVMQSYFLDEFLLPSESL--EYAKFMFQKRKIQTLTLPILQYQKL 196 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + S + +++ Y D + + RISYI D+ + + + + +E + Y+KNK+ + Sbjct: 197 QNVSEEEMEAYYQNYPDQFLSSRKARISYIKLDIESQYENLNLKEEEFEF-YKKNKKFFT 255 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIP 321 +P + + K+A+ + L +G F +LA++ + + S+G KE++P Sbjct: 256 NPPKNYYSMIQLDSIKDAELMIEKLSQGFSFEELAKKFSTDPFSAKKNGSIGWIEKEFLP 315 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS-NIKPSFTVSFQEVKKDIANQMRITKA 380 V ++ +L K G + +I Y+I + +I S+ +F E K +I + + +K+ Sbjct: 316 QVIVSA---NLKKIGQISKIIEFEGKYLIFRLDRSINKSYK-TFLESKSEIHDILLKSKS 371 Query: 381 SEKVKEDYKRLEEFL 395 SEK + ++ EF+ Sbjct: 372 SEK----FYKIREFI 382 >gi|251794480|ref|YP_003009211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] gi|247542106|gb|ACS99124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] Length = 392 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 79/144 (54%), Gaps = 6/144 (4%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E ++++++D+++A Y+ NK +PE ++ ++EA++ + LK G F LA+E Sbjct: 200 EPQVKVTDDDIKAYYDANKASMSTPEQIRASHILVATKEEAEDILKQLKAGADFATLAKE 259 Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + G + L F K + + + D+ F+L KKG+ + V+ S+GY I ++ K Sbjct: 260 KSTDTGTKDNGGDLNFFGKGSM-EPAFEDAAFAL-KKGELSGVVQTSYGYHIIKKTDEKA 317 Query: 359 SFTVSFQEVKKDIANQMRITKASE 382 + T + +E K+DI Q+ K SE Sbjct: 318 AVTPTLEEKKEDIKYQLVTQKVSE 341 >gi|85858466|ref|YP_460668.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB] gi|85721557|gb|ABC76500.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB] Length = 533 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 90/491 (18%), Positives = 204/491 (41%), Gaps = 34/491 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE++RK ++ W+ K L ++ V F+ + + S TV V +++ + + Sbjct: 1 MLELMRKHAKNWLMKFLLGMIIVVFIFYFGTRT--GKEKSETVAIVDGKEIALAEVQKEY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ G + E + + L + LD+L++ A + Q ++ L A V I Sbjct: 59 SNLAEFYRRQYGGSLTDEMLKGLELKQNALDSLIAQAIIMQKAGELNLTATDDEVRNFIM 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D F+ ++ L + +E+ +MLS + + ++ S+ + Sbjct: 119 AYPAFQ-RDGTFNEKIYQQMLRLNRMTPEEFEASQQRMLSAAKLEQLIQEAVKVSDQEVF 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E + Y++ PS L + +++ + +R PE +I + F Sbjct: 178 DFFSFQNEQIKISYLMFKPADFKGAISPSRKDLETYLKEHGNEFRVPEQMQIKALFFPGR 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-----SPEIRTVEQLVFPN----------QKEADE 285 + K +I ++ YE+++ ++ +P ++ V+ + ++A + Sbjct: 238 DFAGKADIPESDIVDYYERHRSEFAQKGGKAPSLKEVKPRIINELAKISGMAAAAEQAKK 297 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPV 341 A ++ + + F A + +L ++ F+ IP VS I + KK + + V Sbjct: 298 AHDTIYQEENFDSYAAQN--NLKTVTTDFFTLNNIPQPFSKVSDFSKIVADLKKDEISKV 355 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + GY V + K S+ +++++++A + +A + ++ L G S+ Sbjct: 356 LSDEEGYFFIKVGSRKSSYIPELKDIEQEVAKRYTEMEARNRCRKAADAALGRLKKGESL 415 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF--GKDDPLSKDHTVALP 459 I++ K+ + +G G + + +QL ++ + +P D T+ + Sbjct: 416 VRIAQENKLAPAE------SGFFKPGAAIPGLDANQQLSMALYQLSESNPFP-DQTLEIN 468 Query: 460 DGSYMWVQIKE 470 +G + +Q KE Sbjct: 469 NG-FAIIQFKE 478 >gi|134277039|ref|ZP_01763754.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 305] gi|134250689|gb|EBA50768.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 305] Length = 644 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 76/406 (18%), Positives = 157/406 (38%), Gaps = 43/406 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D +F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPD----------RFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 KK + + V+ G FG+ I +++KP+ EVK IA + Sbjct: 349 AFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDL 394 >gi|332970309|gb|EGK09301.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330] Length = 610 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 45/366 (12%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIG 72 A++ L + + F+ +GL++ F +S +V VG Q +I E+ Sbjct: 12 AQLLLGAIGISFIGFGLAN--FDISTDKNYIVRVGDQ------YITRDALEIA------- 56 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + NSE++ V ++ L++ A L + + +G+ ++ + +P FH + KF Sbjct: 57 -IRNSEQSGGVADRNQVFQILLNRAYLQEGAKRLGIVVSDAQIKQAVVDTPEFHDANGKF 115 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY---FEN 189 F + L + ++E++++ + L+ T ++ G + +QA +F F Sbjct: 116 DPAKFQAFLQQTHLSEEQFMAQERERLTLTVLLNTLNQG----TVSDEQAMQFVNARFAE 171 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R++ V N + +A L ++++ K Y + + YI+ + K +S Sbjct: 172 RTIRTSVFNPENYAKDVKIDDASLQKFYDANKQTYALQQGVKYDYIVLSPKDLLDKQTVS 231 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------------KF 296 + E+QA K+ + P R + ++ K ADEA +S K + KF Sbjct: 232 DAEVQAAL-KDAQANAKP-TRKIAHILIEAPKSADEATRSKAKAQAEQVAKEAQAAPEKF 289 Query: 297 IQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 LA ++ G + S LG+F+K+ +P +L ++ F L +G+ + V+ FGY I Sbjct: 290 ADLAKQYSQDAGSAQSGGELGNFAKDGSLPAPALEEAAFKLG-EGEVSGVVETDFGYHIV 348 Query: 352 HVSNIK 357 V++I+ Sbjct: 349 RVTDIQ 354 >gi|87200036|ref|YP_497293.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM 12444] gi|87135717|gb|ABD26459.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM 12444] Length = 646 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 24/232 (10%) Query: 96 GATLDQFIEDIGLE------------ADHGRVWG----------EIARSPLFHGKDNKFS 133 G T+ QF++ GLE A+ G+ G EI + F G D KFS Sbjct: 78 GLTMKQFLDGGGLEGVLSGMIDRLALAEWGKKHGLAVSDRLVDSEIVKIGAFQGPDGKFS 137 Query: 134 HDVFVSRLAREGINEKEYIDHYTK-MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + LA+ G+ +KE + + +++R ++ G P+ +L A E R Sbjct: 138 QKAYEQLLAQRGLTDKEVRNDLAQGLMARQLLLPAAFGAQMPAEAVLRYAS-LLTEKRVG 196 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 I + + P + L ++ K Y PE + I Y L D + ++ E Sbjct: 197 TIISVPSLAFAPAGGPDDNALAAFYNANKGRYMQPERRTIRYALVDEATLKNVPAPTDAE 256 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + Y+ N Y E R+V Q++ P + A + KG A +G Sbjct: 257 IANRYKLNTAVYAPSEQRSVTQVIVPTEAAARALAAEVGKGGALDTAARSKG 308 >gi|254230430|ref|ZP_04923809.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25] gi|151937031|gb|EDN55910.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25] Length = 273 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/263 (19%), Positives = 124/263 (47%), Gaps = 15/263 (5%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQELGMISQ 69 + KI L ++ + F+ G+ + VSG++ + VG ++P F +++ E + Sbjct: 2 SIAVKIILGLIILSFVFAGVGS--YIVSGNNNSAAKVGNTEIPRGEFEMAYQNERNRMQA 59 Query: 70 KIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 ++G + ++ A K +LD +++ LDQ E +GL +V I P F Sbjct: 60 QLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRSMILDMPQFQ 119 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD---QAK 183 + +F +++ + L R G + D + + + R V + ++ S +L QA+ Sbjct: 120 S-NGQFDQEIYQASLRRAGFSP----DSFAEYMRRELVREQLLNALQNSEFILPGEVQAE 174 Query: 184 -RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + + + R + I ++ + ++ + Q+++ DN+ PE +++YI Sbjct: 175 GKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELSAEAL 234 Query: 243 EKKIEISNDELQAEYEKNKEKYF 265 ++++ +S+ E++ Y+++ ++ F Sbjct: 235 KEQVNVSDAEVKKYYDEHLKQIF 257 >gi|327480677|gb|AEA83987.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri DSM 4166] Length = 618 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 103/547 (18%), Positives = 234/547 (42%), Gaps = 62/547 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + V+ V + G DA+F+ + ++ V +++ + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVVLLALTGF-DAIFNAASNAQNAAEVNGEEISRYDLDQA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117 + ++Q++G + LD ++L + G+ +D+ + L+A G + Sbjct: 60 MNMQRRQLAQQLGQDFDPSL-----LDDRLLRDAALGSLIDRMLL---LQAAKGANFAFS 111 Query: 118 ------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 I ++P F D F+ F + + G + + ++L + ++G G Sbjct: 112 REALDQLILQTPEFQ-VDGAFNPARFDQVIQQMGYSRL----QFRQLLEQEMLIGQLRAG 166 Query: 172 MRPSNLLLDQAKRFY--FENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRA 226 + + + DQ + + E ++ D+ L VPA + S+ + +++E D +R Sbjct: 167 ISGTGFVTDQQVQNFARLEMQTRDFATLT---VPAQHEAIEVSDDQINEFYEANADRFRT 223 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--- 283 PE + Y+ ++E S++ELQ Y+K E R ++ E Sbjct: 224 PEQVVVEYVELKKESFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDD 281 Query: 284 ------DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAK 334 DE +K G+ F +A+E + + G F+ + D + D++++L Sbjct: 282 EAKAKIDEIAARVKNGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-N 340 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +G+ + + FG+ I + ++ SF+ +K ++ +++ + ++ E K+LE+ Sbjct: 341 EGEVSAPVKSEFGWHIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLED- 399 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDP 449 ++++ + + + + + G++ ++V + E++L V G Sbjct: 400 --AAFEASDLAQPAQELGLMVQTTEAFGREGGEGITANRQVIQAAFSEEVL--VDG---- 451 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + + L + + +++KE + L +V D+ + + AE ++ QL+ E Sbjct: 452 -ANSSVIELDPDTAVVIRVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAE 510 Query: 510 YSKEGKN 516 +EGK Sbjct: 511 L-REGKQ 516 >gi|221198210|ref|ZP_03571256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2M] gi|221209208|ref|ZP_03582200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2] gi|221170946|gb|EEE03401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2] gi|221182142|gb|EEE14543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2M] Length = 644 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 69/363 (19%), Positives = 148/363 (40%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPDHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + ++ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V L + + R V +VL + P++A L + Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ +K + PE I Y+++ + ++ +++ Y+ N +F E + + Sbjct: 219 YDAHKQQFATPETATIEYLVYSPAAAAASAQPTDADIKKFYDDNP-THFRTEAQVRVSHI 277 Query: 277 F-------------PNQKEADEAFQSLK-KGKKFIQLAEE---------QGKSLSDISLG 313 F + +A++ +K + +F Q+AE+ +G L I+ G Sbjct: 278 FIAAASDASAADKAAAKAKAEQLLADVKARPDQFAQIAEKNSQDAPSAAKGGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+G+ + V+ G+ I +++KPS F EVK +IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGEISGVVQSDLGFHILKATDVKPSIVKPFAEVKDEIAA 392 Query: 374 QMR 376 ++ Sbjct: 393 TLK 395 >gi|325518979|gb|EGC98507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. TJI49] Length = 644 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 72/369 (19%), Positives = 146/369 (39%), Gaps = 32/369 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPDHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVREALLSDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V L + R V +VL A P++A L + Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQHLSELAAQQREVQALVLKTSDYAAKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + + ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPTDADVKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+G+ + V+ G+ I + +KPS F EVK +IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGEVSGVVQSDLGFHILKATEVKPSAVKPFAEVKDEIAA 392 Query: 374 QMRITKASE 382 ++ AS+ Sbjct: 393 SLKQQYASK 401 >gi|71276515|ref|ZP_00652790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Dixon] gi|71901997|ref|ZP_00684044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|170729736|ref|YP_001775169.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12] gi|71162692|gb|EAO12419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Dixon] gi|71728242|gb|EAO30426.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|167964529|gb|ACA11539.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12] Length = 655 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 143/685 (20%), Positives = 273/685 (39%), Gaps = 100/685 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI--------WGLSDALFSVSGSST---------V 43 ML+ +R+ + W+A + +L +PFL G D + + S T Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIGGGGKDDVAQLQASPTWWKSAPAFWP 60 Query: 44 VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 +S+ RQ + F + + Q + G ++ ++ K+LD L+ + Sbjct: 61 ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMRL 120 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160 E G+ V IA F K KF+ D + LA+E + + ++Y + + Sbjct: 121 VAEGAGVVISDDAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179 Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214 + ++ +F G P N L++ + R+ + + L PA+ A+ SN + Sbjct: 180 QLSMIPSTIFDSGFVP-NTELERILALLGQTRNAELVTL-----PALKLDMAEISNMQIK 233 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +W+ ++D++R PE Y+ D + S L+ Y+ + E R Sbjct: 234 EWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAVLRKRYDAQQRGEAQNEQRKAAH 292 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVS------ 324 ++ +A + K K ++ A + G + + S SK+ D+ Sbjct: 293 ILITAGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGM 352 Query: 325 ----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D++F++ K G+ I FG + + IK + + F+ V+ + A Sbjct: 353 MVKPFEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--------A 403 Query: 381 SEKVKEDYKRLEEFL-ALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVKGKEVA 431 +E+ KED + EF G MD + + +S + LPL +D G +A Sbjct: 404 AEQTKEDLDK--EFNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAVG--IA 459 Query: 432 AIPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 A P +++LF GK DP ++ +H+V L + ++ +P D+ E+V+ Sbjct: 460 ANPAVQRVLFNHDFIQEGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVREQVVA 515 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V+ D + ++ +S A+ LV K G ++ K A L + + + Sbjct: 516 AVRAD----RADKDGASAADALVARLQK-GDTLEEVAK---AEKLQITPLTGLQRTAQVP 567 Query: 545 GYDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYL 594 + +FS PV V +++G Y VF VT G P ++K L Sbjct: 568 AFAATRAIFSALSPVAGKPTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQL 626 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVH 619 Q+ + + + ++ ++ VT+H Sbjct: 627 DQIEGTLAVHAYVDMMRKRFKVTIH 651 >gi|146282422|ref|YP_001172575.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501] gi|145570627|gb|ABP79733.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501] Length = 618 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 103/547 (18%), Positives = 234/547 (42%), Gaps = 62/547 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + V+ V + G DA+F+ + ++ V +++ + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVVLLALTGF-DAIFNAASNAQNAAEVNGEEISRYDLDQA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117 + ++Q++G + LD ++L + G+ +D+ + L+A G + Sbjct: 60 MNMQRRQLAQQLGQDFDPSL-----LDDRLLRDAALGSLIDRMLL---LQAAKGANFAFS 111 Query: 118 ------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 I ++P F D F+ F + + G + + ++L + ++G G Sbjct: 112 REALDQLILQTPEFQ-VDGAFNPARFDQVIQQMGYSRL----QFRQLLEQEMLIGQLRAG 166 Query: 172 MRPSNLLLDQAKRFY--FENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKYKDNYRA 226 + + + DQ + + E ++ D+ L VPA + S+ + +++E D +R Sbjct: 167 ISGTGFVTDQQVQNFARLEMQTRDFATLT---VPAQHEAIEVSDEQINEFYEANADRFRT 223 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--- 283 PE + Y+ ++E S++ELQ Y+K E R ++ E Sbjct: 224 PEQVVVEYVELKKESFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDD 281 Query: 284 ------DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAK 334 DE +K G+ F +A+E + + G F+ + D + D++++L Sbjct: 282 EAKAKIDEIAARVKNGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-N 340 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +G+ + + FG+ I + ++ SF+ +K ++ +++ + ++ E K+LE+ Sbjct: 341 EGEVSAPVKSEFGWHIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLED- 399 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKD-----VKGKEVAAIPYKEQLLFRVFGKDDP 449 ++++ + + + + + G++ ++V + E++L V G Sbjct: 400 --AAFEASDLAQPAQELGLMVQTTEAFGREGGEGITANRQVIQAAFSEEVL--VDG---- 451 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + + L + + +++KE + L +V D+ + + AE ++ QL+ E Sbjct: 452 -ANSSVIELDPDTAVVIRVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAE 510 Query: 510 YSKEGKN 516 +EGK Sbjct: 511 L-REGKQ 516 >gi|307721593|ref|YP_003892733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas autotrophica DSM 16294] gi|306979686|gb|ADN09721.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas autotrophica DSM 16294] Length = 276 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 18/174 (10%) Query: 220 YKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 YK Y+ E + + V +K+ I+ISN EL+ Y KNKE++ E ++ Sbjct: 88 YKSEYKKLEQRMKKELAIQVWQKKLLDSIKISNKELKDYYNKNKEEFNEKESVHARHILV 147 Query: 278 PNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLAD 327 + EA + LK +KFI+LA+++ S LG FSK + +P + D Sbjct: 148 KAEDEAKKIIAQLKSLSGEKLKEKFIELAKKESTGPSGPKGGDLGYFSKGQMVP--AFND 205 Query: 328 SIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 +FS+ KKG+ T PV FGY + +V + KPS T SF EVK I ++++ K Sbjct: 206 KVFSM-KKGEVTLKPV-KTQFGYHVIYVEDKKPSMTRSFDEVKAFIEQRLKMEK 257 >gi|293608199|ref|ZP_06690502.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828772|gb|EFF87134.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 621 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 109/523 (20%), Positives = 202/523 (38%), Gaps = 71/523 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+K+ Q + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 61 SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTST-----FADYS 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S + L Q E R++ + SN T ++ K+++ ++ + Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDV 228 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284 Y++ K + ELQ Y K E RTV+ ++ QK A Sbjct: 229 DYVVLSPSMMTKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341 E + ++ G F Q A + + S + G + Y V + ++ SL K G + Sbjct: 289 EVYAKIQGGLSFAQAASQFSEDPSSKAKGGLVEAYASGVFSDAFDKTVLSL-KNGQVSQP 347 Query: 342 IHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + +GY I +N PSF A + R+T EK K +A Sbjct: 348 VKTQYGYHIIEAETQANQIPSFE----------AEKARLTAEVEKNK---------VATV 388 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---------PY--KEQLLFRVFG-- 445 S S E IV D ++ ++VKG +V ++ PY + ++F Sbjct: 389 YSDAVNSLNETIVGND--SLEAVVQEVKGAKVESLNGVTLATQNPYLSDPSVKIKLFNDD 446 Query: 446 -KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 K+ + + L +G +WV++++ A + L + + + K Sbjct: 447 VKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEAK 489 >gi|325927445|ref|ZP_08188692.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans 91-118] gi|325542195|gb|EGD13690.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans 91-118] Length = 656 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 92/423 (21%), Positives = 159/423 (37%), Gaps = 66/423 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVL 213 + V+ V G + ++ + E R V+ +L P AD S+A + Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQI 232 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 QW++ + ++R PE I Y+ + L+ YE K ++ PE R Sbjct: 233 KQWYDGHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLAS 292 Query: 274 QLVFP----------------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 ++ Q AD F +L K +++ G L + Sbjct: 293 HILISAGADAAAQKAAEAKAAKLAAEAKQPGAD--FAALAKANSQDPGSKDAGGDLGWVE 350 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 G+ K + D++FS+ K G+ I FGY + + +K SF++V+ + Sbjct: 351 KGTMVKPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQL 403 Query: 372 ANQ 374 A + Sbjct: 404 AAE 406 >gi|254514389|ref|ZP_05126450.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR5-3] gi|219676632|gb|EED32997.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR5-3] Length = 622 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 91/409 (22%), Positives = 178/409 (43%), Gaps = 33/409 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINS 59 ML+ IR ++ VAK+ + ++ + F I+G+ LFS GS+ V V G + PF + Sbjct: 1 MLQDIRANAQGTVAKVIIGLIVISFSIFGIESLLFS-GGSNGVAEVNGEEISPF-----A 54 Query: 60 WKQELGMISQKIGFVVNSERARSVGLD-----KKILDNLVSGATLDQFIEDIGLEADHGR 114 +QEL + Q+ + E A LD ++ L+ L+ + Q +D+GL Sbjct: 55 LQQELS-VQQRRLLSILGEDADPALLDQAQMSQQALETLIQREIIKQAAKDMGLNTSDQA 113 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + + F D +FS D+F LA G + + L+ +G G+ Sbjct: 114 IADIVGSMEQFQ-IDGQFSPDLFQGALASAGFTPA----LFRERLAEDVEIGQLRAGVAG 168 Query: 175 SNLL----LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S+ LD A E R V YI L A + S+ + ++++ + +++ E Sbjct: 169 SDFSTEAELDLAASIALEGRDVRYISLPLLDFIASVELSDEAVETFYQQNPERFQSEESV 228 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----A 286 + Y+ + K ++ + E ++ E S E R L+ + + E A Sbjct: 229 ILEYLELGIDAYRKDVDEERLREEFELVRD-EFELSAEARVSHILIEGSDADRAERIAAA 287 Query: 287 FQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++L +G F A E G + LG + + P+ ++ ++I +L G+ + + Sbjct: 288 QKALSEGMSFADAAAEFSDDIGSAQDGGDLGYTAGDTFPE-AMEEAIAALG-VGEQSAAV 345 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + V++ + +VSF++V ++ ++++ A+ + D +RL Sbjct: 346 ETEAGTHLLLVTDRREGSSVSFEDVAAELEDRIQSRDAAADLLVDVERL 394 >gi|78046641|ref|YP_362816.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035071|emb|CAJ22716.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 656 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 92/423 (21%), Positives = 159/423 (37%), Gaps = 66/423 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVL 213 + V+ V G + ++ + E R V+ +L P AD S+A + Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQI 232 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 QW++ + ++R PE I Y+ + L+ YE K ++ PE R Sbjct: 233 KQWYDGHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLAS 292 Query: 274 QLVFP----------------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 ++ Q AD F +L K +++ G L + Sbjct: 293 HILISAGADAAAQKAAEAKAAKLAAEAKQPGAD--FAALAKANSQDPGSKDAGGDLGWVE 350 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 G+ K + D++FS+ K G+ I FGY + + +K SF++V+ + Sbjct: 351 KGAMVKPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQL 403 Query: 372 ANQ 374 A + Sbjct: 404 AAE 406 >gi|121997400|ref|YP_001002187.1| hypothetical protein Hhal_0599 [Halorhodospira halophila SL1] gi|121588805|gb|ABM61385.1| conserved hypothetical protein [Halorhodospira halophila SL1] Length = 524 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 86/435 (19%), Positives = 180/435 (41%), Gaps = 44/435 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + W+A + + + +PF+ G + + V V +++P S + Sbjct: 1 MLQAIRDGIKGWIAWVIIGFIALPFIFMGGYEYFGGGQDDAVVARVDGEEIPRSQIDQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + + G + L ++ L+ L+ L ++ GL V I Sbjct: 61 ERQRAQLREMFGGDLPDGAFDGAALRREALEQLIDEQLLHAYVGKQGLRVTDQEVAQTIR 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV------VGMFVGGMR- 173 +FH + +FS + + L R + ++Y + L R D+ +F + Sbjct: 121 GQEIFH-EGGQFSRARYQTLLERNRLTPEDY-----EGLVRRDLKADQFQQAVFASSIST 174 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 PS L++ R E+RS Y+ ++ +R+ ++ +A + +E + D+Y APE R+ Sbjct: 175 PSQ--LERLVRLQDESRSFSYVEIDADRYTDEVS-VDDAEVEAHYEAHTDDYMAPEAVRL 231 Query: 233 SYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 Y+ ++++ ++ LQ Y E+ + P V + + + + ++ Sbjct: 232 EYVELGPLALRDQVDVDDETLQERYDERYGDDDDPPTFDDVREELLADSIREQYRTELIE 291 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGSFG-- 347 G + +A EQ SL + + +F E V +D I + GD + V+ +F Sbjct: 292 AGDELGNIAFEQPDSLEPL-VDTFGLE----VRTSDWIDRDGGEGIGDLSEVVEEAFSED 346 Query: 348 -----------------YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 Y++ + + + +EV I Q+R +A++ +E + Sbjct: 347 VLEHGYNSDLIRVDEDRYLVVRLLEHREAEPKPLEEVADTIREQLRQERAADLARERAEE 406 Query: 391 LEEFLALGTSMDEIS 405 L L G S+DE++ Sbjct: 407 LVARLRDGDSLDELA 421 >gi|115351959|ref|YP_773798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] gi|115281947|gb|ABI87464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] Length = 644 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 70/363 (19%), Positives = 143/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V ++ K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAINGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V + + R V +V A P++A LT + Sbjct: 159 YSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVQKTSDYAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + S ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAASAQPNDADIKKFYDDNPTHFRSEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKNSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+GD + V+ G+ I + +KPS F +VK IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPSVVKPFADVKDQIAV 392 Query: 374 QMR 376 Q++ Sbjct: 393 QLK 395 >gi|285017392|ref|YP_003375103.1| peptidylprolyl isomerase (rotamase d) protein [Xanthomonas albilineans GPE PC73] gi|283472610|emb|CBA15115.1| probable peptidylprolyl isomerase (rotamase d) protein [Xanthomonas albilineans] Length = 661 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 143/695 (20%), Positives = 275/695 (39%), Gaps = 112/695 (16%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN-- 58 ML+ +R+ + W+A + +L +PFL + L V G++ V V + P S +++ Sbjct: 1 MLQTLREKTSGWIATAIIGLLMIPFLFVIDTGYLGGV-GANNVAKV---QAPPSWWLSAP 56 Query: 59 SW--------KQELGMISQKIGF-------------VVNSERARSVGLDKKILDNLVSGA 97 SW E+ ++GF + S+ +K+LD L+ Sbjct: 57 SWWPVSLLWQHHEISTEQFRMGFEQARQQARQQQGEAFDPREFESIDNKRKVLDQLIDEQ 116 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR------EGINEKEY 151 + E G+ V IA P F + KF + + LA + ++ Sbjct: 117 VVKLAAEQAGVVIGDASVRDYIASIPAFQ-NNGKFDPERYRLALASGTPPRTPAMFQQLV 175 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-SN 210 D + + T ++ G + + L+ + E R V+ +L +PA P S+ Sbjct: 176 RDALQQSVIPTGLMESAFGSKQETERLM----KMLGETRDVELAMLP--EMPADTAPVSD 229 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 A + QW++ + +++ PE I Y+ + + L+ YE+ K ++ P+ R Sbjct: 230 AQVQQWYDTHTSDFKQPETVSIEYVELNAAKLPASKPADEATLRKRYEEEKARFVEPDQR 289 Query: 271 TVEQLVFPNQKEADE-----------AFQSLKKGKKFIQLA----EEQGKSLSDISLGSF 315 ++ K+A A ++ + G F LA ++ G + LG Sbjct: 290 LASHILISAGKDAASQKAAEAKAVKLAAEAKRPGADFAALARANSDDPGSKNAGGDLGWV 349 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 K + D++F++ K G+ + FGY + + +K SF++V+ + Sbjct: 350 EKGVMVK-PFEDALFAM-KPGEIVGPVKSEFGYHVIQLREVKGGKGKSFEQVRDQL---- 403 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLP---LVDFAGKDVKG 427 ASE+++ D ++ L+ G +DE+ + ++ + LP L F G Sbjct: 404 ----ASEQLQADNEKALSALS-GKLVDEVYKNPTELASAAKDVGLPVQTLGPFTRASASG 458 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVA-----LPDGSYMWVQIKESIPARDRKLEEV 482 +AA P + F D L +D TV+ P+ S M +++ + P + L +V Sbjct: 459 --IAAQPAVLRAAF-----SDALVQDGTVSDPINLGPNHSVM-IRVTQHQPEQILPLAKV 510 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NE 540 V +TA+ ++KA+ L++ K G+ + + G L QIN M + Sbjct: 511 HEQVIAAVHADRTAKAAAAKADALLVRLRK-GETLQALA---GPEKL---QINPMPALSR 563 Query: 541 NKFFGYDGISQVFSGPVEM----------VKCFPIENGLSYVVFKVTNSKVG-----PVQ 585 + + +FS P + + P G Y +F VT G P + Sbjct: 564 SPMPSPEANRTIFSAPRPVAGKPSFGKVALPAAPGAGGKRYALFAVTKVMPGDLSKVPAE 623 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 ++ F L Q+ + + ++ +Y V+V + Sbjct: 624 QQTTFKQQLAQIEGAADAKAYVDAMRKRYKVSVQE 658 >gi|242309441|ref|ZP_04808596.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489] gi|239524012|gb|EEQ63878.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489] Length = 272 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 13/157 (8%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GK----KFIQL 299 K+ +S+ E++ Y NK K+ PE+ V ++ ++ EA +K+ GK KF +L Sbjct: 108 KVRVSDSEIEKFYNDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNSLAKFEEL 167 Query: 300 AEEQGKSLSDISLGSFS----KEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVS 354 A+ + K S + G + +P+ AD+ F L KG +T + FGY + +V Sbjct: 168 AKSKSKDGSAQNGGDVGWIARGQVVPE--FADAAFKL-NKGQYTQTPVKTQFGYHVIYVE 224 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + KP+ T++ ++VK I +R+ K E VK++ + L Sbjct: 225 DKKPTTTLALKDVKGQIEQNLRLMKFQENVKKEGQEL 261 >gi|224417810|ref|ZP_03655816.1| hypothetical protein HcanM9_00899 [Helicobacter canadensis MIT 98-5491] gi|253827151|ref|ZP_04870036.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313141352|ref|ZP_07803545.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510557|gb|EES89216.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313130383|gb|EFR48000.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 489 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 26/267 (9%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 WV+ I V F+ WG D FS S S+ V VG+ KV + + + G+ +Q + Sbjct: 17 WVSTIAFV--GAGFVGWGSYD--FS-STSNAVAVVGKTKVSINEMQREYSRLYGIYNQLV 71 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G ++ E+A+ +G++++ L+NL+ A + + D+GL A + I + F + + Sbjct: 72 GGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQAITSTESFQN-NGQ 130 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F ++ L + K++ + + L + + + P + E S Sbjct: 131 FDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTPLEI----------ETLS 180 Query: 192 VDYIVLNNRHVPAI------ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 Y + + H+ I +P+N + +++E+ KD Y+ IS + + Sbjct: 181 AAYSMEDLVHIQIIDKKTINVNPTNEEVKRYWEENKDIYQTERGYEISSVFIPLD----S 236 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTV 272 IEI L++ YE K ++ E + + Sbjct: 237 IEIQEASLESYYEDFKNQFLDSEGQVI 263 >gi|332295328|ref|YP_004437251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium narugense DSM 14796] gi|332178431|gb|AEE14120.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium narugense DSM 14796] Length = 409 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 18/158 (11%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 + IS E++A YE++K+++ PE + ++ ++EA+ ++ LK+GK F LA+E Sbjct: 191 VTISEAEVKAYYEEHKKEFVQPEQIHLRHILVKTEQEANNIYEQLKQGKDFATLAKEYSI 250 Query: 303 ------QGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +G L IS S +PD++ AD + K +F+ I FGY I Sbjct: 251 DTPTKDKGGDLGWISKASL----VPDLAKAADEL----KDNEFSKPIKSPFGYHIIEKLG 302 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +PS +SF EVK + Q+ K ++ +++ +K +E Sbjct: 303 TRPSKELSFDEVKNTLTAQLLRNKQAQSLEKWFKEKKE 340 >gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus influenzae Rd KW20] Length = 594 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 78/360 (21%), Positives = 159/360 (44%), Gaps = 39/360 (10%) Query: 56 FINSWKQELGMISQKIG--FVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADH 112 F+N + QE + +Q+ G FV S+ V L + I++ ++ L Q+++++ L Sbjct: 28 FLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSD 87 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + I P F K KF + V+ L + + D Y +L + + G+ Sbjct: 88 EMIKRAIVTDPNFQVK-GKFDNAVYQRILQQNHLTS----DGYASILRASLPLEQIQNGV 142 Query: 173 RPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 S ++ + +F+ R L+ A S+ + ++E + ++ PE Sbjct: 143 ANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPE 202 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++ YI + +++++ E+ Y+ NK ++ + + ++ F N+++A A++ Sbjct: 203 QVKVQYIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQ---FANEQDAKVAYE 259 Query: 289 SLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 L+KG F +A + KSL IS LG ++ +P + D+ +L + G ++ I Sbjct: 260 ELQKGANFADVA--KAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPI 315 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-----------KASEKVKEDYKRL 391 + Y H+ ++ S + VK IA+ +R + +AS+K ED K L Sbjct: 316 NVDGNY---HIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSL 372 >gi|15837793|ref|NP_298481.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c] gi|9106161|gb|AAF84001.1|AE003953_5 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c] Length = 655 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 145/685 (21%), Positives = 276/685 (40%), Gaps = 100/685 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI--------WGLSDALFSVSGSST---------V 43 ML+ +R+ + W+A + +L +PFL G D + + S T Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIEGGGKDDVAQLQASPTWWKSAPAFWP 60 Query: 44 VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 +S+ RQ + F + + Q + G ++ ++ K+LD L+ + Sbjct: 61 ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMRL 120 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160 E G+ G V IA F K KF+ D + LA+E + + ++Y + + Sbjct: 121 VAEGAGVVISDGAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179 Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214 + ++ +F G P N L++ + R+ + + L PA+ A+ S+ + Sbjct: 180 QLSMIPSTIFDSGFVP-NTELERILVLLGQTRNAELVTL-----PALKLDMAEISDMQIK 233 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +W+ ++D++R PE Y+ D + S L+ Y+ + E R Sbjct: 234 EWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAVLRKRYDAQQRGEAQNEQRKAAH 292 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDI-SLGSFSKEYIPDVS------ 324 ++ +A + K K ++ A + G +L+ I S SK+ D+ Sbjct: 293 ILITAGADAASQKVAEAKAAKLVEEARKPGVDFAALARINSQDPGSKDAGGDLGWVQRGM 352 Query: 325 ----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D +F++ K G+ I FG + + IK + + F+ V+ + A Sbjct: 353 MVKPFEDVLFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--------A 403 Query: 381 SEKVKEDYKRLEEFL-ALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVKGKEVA 431 +E+ KED + EF G MD + + +S + LPL +D G +A Sbjct: 404 AEQTKEDIDK--EFNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAVG--IA 459 Query: 432 AIPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 A P +++LF GK DP ++ +H+V L + ++ +P D+ E+V+ Sbjct: 460 ANPAVQRVLFNHDFIQEGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVREQVVA 515 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V+ D + ++ +S A+ LV K G +++ K A L + + + Sbjct: 516 AVRAD----RADKDGASAADALVARLQK-GDTLQEVAK---AEKLQITPLTGLQRTAQVP 567 Query: 545 GYDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYL 594 + +FS PV V +++G Y VF VT G P ++K L Sbjct: 568 AFAATRAIFSALSPVAGKPTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQL 626 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVH 619 Q+ + + + ++ ++ VT+H Sbjct: 627 DQIEGTLAVHAYVDMMRKRFKVTIH 651 >gi|167581584|ref|ZP_02374458.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis TXDOH] Length = 644 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 74/407 (18%), Positives = 157/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGM 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQMLGAQFDAKAFDTPQRRQQLLDGLIQQRALADETQRLHLTASDGAVRQTL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V ++L + P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N +Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDIDVKKYYDDNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D+ F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPDQ----------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KKG+ + V+ G FG+ I +++KP+ EVK I ++ Sbjct: 349 AFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLK 395 >gi|148262224|ref|YP_001228930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146395724|gb|ABQ24357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 310 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 KR+ F + E++ +IS+ ELQ Y KNK+K+ + E ++ + EA E + Sbjct: 113 KRVVVEAFLKKKVEEEAKISDTELQDFYNKNKDKFKTGEQVKASHILVKTEPEAQEILKQ 172 Query: 290 LKKGKKFIQLAEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA++ + LG F K +PD A +F L K+G + V+ Sbjct: 173 LKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGAMLPDFEKA--VFGL-KEGAISGVVKTK 229 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 FGY I ++ +P+ F EVK +Q++ EK +E +K+L+E L Sbjct: 230 FGYHIIKLTGKRPAGIRPFDEVK----DQLKAAILPEKQQEVFKKLKEDL 275 >gi|294666558|ref|ZP_06731799.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603702|gb|EFF47112.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 656 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 91/421 (21%), Positives = 159/421 (37%), Gaps = 62/421 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVL 213 + V+ V G + ++ + E R V+ +L P AD S+A + Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQI 232 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 QW++ + ++R PE I Y+ + L+ YE K ++ PE R Sbjct: 233 KQWYDGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLAS 292 Query: 274 QLVF---PNQKEADEA-----------------FQSLKKGKKFIQLAEEQGKSLSDISLG 313 ++ P+ A F +L K +++ G L + G Sbjct: 293 HILISAGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKG 352 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + K + D++FS+ K G+ I FGY + + +K SF++V+ +A Sbjct: 353 TMVKPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAA 405 Query: 374 Q 374 + Sbjct: 406 E 406 >gi|71901123|ref|ZP_00683230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|71729128|gb|EAO31252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] Length = 655 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 144/689 (20%), Positives = 274/689 (39%), Gaps = 110/689 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI--------WGLSDALFSVSGSST---------V 43 ML+ +R+ + W+A + +L +PFL G D + + S T Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIGGGGKDDVAQLQASPTWWKSAPAFWP 60 Query: 44 VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 +S+ RQ + F + + Q + G ++ ++ +K+LD L+ + Sbjct: 61 ISLLWQRQGISKQEFQSRFDQARLQRRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMRL 120 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160 E G+ V IA F K KF+ D + LA+E + + ++Y + + Sbjct: 121 VAEGAGVVISDEAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179 Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214 + ++ +F G P N L++ + R+ + + L PA+ A+ S+ + Sbjct: 180 QLSMIPSAIFDSGFVP-NTELERILALLGQTRNAELVTL-----PALKLDTAEISDVQIK 233 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +W+ ++D++R PE Y+ D + S L+ Y+ + E R Sbjct: 234 EWYAVHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAVLRKRYDAQQRGEAQNEQRKAAH 292 Query: 275 LVF------PNQKEADEAFQSL-----KKGKKFIQLA---------EEQGKSLSDISLGS 314 ++ +QK A+ L K G F LA ++ G L + G Sbjct: 293 ILITVGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGM 352 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 K + D++F++ K G+ I FG + + IK + + F+ V+ + Sbjct: 353 MVKPF------EDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--- 402 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVK 426 A+E+ KED + + G MD + + +S + LPL +D Sbjct: 403 -----AAEQTKEDIDKAFNDVT-GKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAV 456 Query: 427 GKEVAAIPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G +AA P +++LF GK DP ++ +H+V L + ++ +P D+ Sbjct: 457 G--IAANPAVQRVLFSHDFIQGGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVR 510 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 E+V+ V+ D + ++ +S A+ LV K G ++ K A L + + Sbjct: 511 EQVVAAVRAD----RADKDGASAADALVARLQK-GDTLEEVAK---AEKLQITPLTGLQR 562 Query: 540 ENKFFGYDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDK 589 + + +FS PV V ++NG Y VF VT G P ++K+ Sbjct: 563 TAQVPAFAATRAIFSALSPVAGKPTVGKVRLDNG-RYAVFTVTQVIPGDLTKFPEEQKEM 621 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 L Q+ + + + ++ ++ VT+ Sbjct: 622 LRQQLDQIEGTLAVHAYVDMMRKRFKVTI 650 >gi|167619701|ref|ZP_02388332.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis Bt4] gi|257138861|ref|ZP_05587123.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis E264] Length = 644 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/407 (18%), Positives = 157/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ S+ V +V K+ + F Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGM 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTL 118 Query: 120 ARSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V ++L + P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N +Y + ++R E Sbjct: 239 YSQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D+ F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPDQ----------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KKG+ + V+ G FG+ I +++KP+ EVK I ++ Sbjct: 349 AFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLK 395 >gi|88810611|ref|ZP_01125868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis Nb-231] gi|88792241|gb|EAR23351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis Nb-231] Length = 645 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/391 (19%), Positives = 164/391 (41%), Gaps = 19/391 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ VA I + +L +PF +G+ + F+ + TV +V + + + Sbjct: 1 MLQTIRDRAQGIVAYIIVGLLIIPFAFFGVYN-YFTGDSNPTVATVNGIDITRAELDAAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + + +G N L ++LD LV A L FI G + I Sbjct: 60 QRQQSQLRELLGDQYNPALFDESHLRPQVLDRLVDQAVLLYFIRSQGFRVTDESLRSFIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D +FS + + + L + G + +Y + + VG + + Sbjct: 120 SQPYFLA-DGQFSKERYRAVLRQSGYSTDQYEAQLRQQQLLRQLELGIVGTAVATKHEMA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++R + ++ +++ + + Q++ +K + P ++SYI + Sbjct: 179 RFVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIELSEN 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADE--------AFQSLK 291 ++E+ + +Q YE+ K+ F+ P+ R V ++ K+A + ++L+ Sbjct: 239 ALADQLELDDKAVQRFYEEFKDSRFTVPDARRVRHILIKLPKDASQHQIEVARGQIEALR 298 Query: 292 ----KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHG 344 +G F +LA+ Q + + + S ++ +A +I A K G+ + I Sbjct: 299 ERIVQGASFAELAQRQSQDVGS-ARQSGDLGFVRQGEMAKAIDEAAFKLPIGETSEPIRS 357 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 FG+ + V+ + F EV+ I ++ Sbjct: 358 RFGWHLIEVTASRAGGVKPFSEVESQIRQEL 388 >gi|212709201|ref|ZP_03317329.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM 30120] gi|212688113|gb|EEB47641.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM 30120] Length = 622 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/385 (20%), Positives = 159/385 (41%), Gaps = 27/385 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M+E +R + + K+ L ++ + F++ G+ A + + GSS V Q + + Sbjct: 1 MMEDLRTKANSPFIKVLLAIIILSFVLTGV--AGYVIGGSSNNAAEVNGQPISKEQLQQA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ--------FIEDIGLEAD 111 ++QE + + +G ++ V + + L + A + + ++ L A Sbjct: 59 FQQERQSLQEYLG-----DKFSEVASNDNYMKELRTQALNNLINNQLINQYANELQLSAS 113 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171 ++ I +F + KF + + L+R IN + + L R + F G Sbjct: 114 DQQIEQAIFAMQIFQ-TNGKFDSEKYREILSRYNINADNFAAQIRQDLVRAQLGKSFTGT 172 Query: 172 --MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 PS + + + R V L+ + A + L ++ ++++ +PE Sbjct: 173 EFALPSEV--KAYAELFMQEREVRTATLSLAALQAKQTVTEDELKAYYAANQNSFISPEQ 230 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++SY+ D K ++++E+++ YE+N + + E + + ++K+A Sbjct: 231 VQVSYVEMDAASM-PKASVTDEEVKSYYEQNLKNFTKAEQKLYSMIQVASEKDAQALEAE 289 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFS--LAKKGDFTPVIHGSF 346 LK G F LA E KS S G+ ++ S I S L +KG + I Sbjct: 290 LKGGADFATLATE--KSTDKFSAGNKGVIGWMEATSTPSEIISANLTEKGQVSAPIKVQD 347 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI 371 YV+ + ++KP F EVK I Sbjct: 348 NYVLFRLDDVKPEAVKPFDEVKSSI 372 >gi|161524527|ref|YP_001579539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|189350717|ref|YP_001946345.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans ATCC 17616] gi|160341956|gb|ABX15042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|189334739|dbj|BAG43809.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans ATCC 17616] Length = 644 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/363 (18%), Positives = 143/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + ++ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V L + + R V +VL + P++A L + Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K + PE I Y+++ + ++ +++ Y+ N + + ++R Sbjct: 219 YDAHKQQFATPETATIEYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAEKNSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+G+ + V+ G+ I + +KPS F EVK +IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGEISGVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAA 392 Query: 374 QMR 376 ++ Sbjct: 393 TLK 395 >gi|167586935|ref|ZP_02379323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ubonensis Bu] Length = 644 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/369 (19%), Positives = 146/369 (39%), Gaps = 32/369 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGTYRQQIDRARQALGAQFDLKSFDTPEHRKEVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V L + + R V +VL + P++A L + Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ K ++ PE I Y+++ + ++ +++ Y+ N + + ++R Sbjct: 219 YDAQKQSFATPETATIQYLVYSPAAAAANAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAAGDASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+GD + V+ G+ I + +KP+ F EVK IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGDVSGVVQSDLGFHILKATEVKPAAVKPFAEVKDAIAV 392 Query: 374 QMRITKASE 382 +++ AS+ Sbjct: 393 ELKQQYASK 401 >gi|57242050|ref|ZP_00369990.1| conserved hypothetical secreted protein, putative [Campylobacter upsaliensis RM3195] gi|57017242|gb|EAL54023.1| conserved hypothetical secreted protein, putative [Campylobacter upsaliensis RM3195] Length = 501 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 90/388 (23%), Positives = 169/388 (43%), Gaps = 35/388 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ V+ FV + WG D ++ + +S+V VG +K+ F F Sbjct: 1 MLTWMQHHKKYLVVTIWISVIAFVGAGVVGWGAYD--YNQNRNSSVAIVGNEKISFVEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q G +Q ++ E A +GL L++L+ L F +++GL A+ V Sbjct: 59 LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E++ + F + F +++ + L + I K Y + + + +F + + L Sbjct: 119 ELSATEEFQNINGIFDKNIYYAILKQNNILSKNYEQILSDRIILNKLNKIFEFPAKENEL 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A F + + I + + +A NA L Q +E +K++++ + SY L Sbjct: 179 QMLAASYFMQDALEIAKITFDKKD---LAVDENA-LKQLWEAHKNDFKTQK----SYELS 230 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK- 294 + KK S DEL+A Y E NK KY + + + ++ F KE SL+K K Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILD---FELAKEMVIKDLSLEKTKN 287 Query: 295 ----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF---- 346 KF+ L ++ D ++ + Y P LA + K P+I Sbjct: 288 LANEKFVALRNQKDDFQKDFNISEEDQNY-PLELLAKT----KNKDILKPIIWQKCENKI 342 Query: 347 ---GYVIAHVSNIKPSFTVSFQEVKKDI 371 G++I ++ P +F+E + ++ Sbjct: 343 CKDGFIILRLNQTNPVRVKNFEEARAEV 370 >gi|254284340|ref|ZP_04959308.1| putative peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR51-B] gi|219680543|gb|EED36892.1| putative peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR51-B] Length = 620 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 124/563 (22%), Positives = 242/563 (42%), Gaps = 83/563 (14%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFINSWKQ 62 +R+ +++ AKI + ++ + F +GL L SG+S G + P + I S K+ Sbjct: 1 MREGAKSTAAKIVIGLIVLSFAAFGLESLLPGGSGTSVAEVNGEEISPAELQNAIASQKR 60 Query: 63 ELGMI-SQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +L I +I +++ ER R L+ L+ L Q D+G+ A + EI Sbjct: 61 QLTQIFGDRIDPAMLDDERIR-----PSALEGLIERKLLLQHAVDLGMIASAQAIGEEIT 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178 F +D FS D + S LA G+ + + +M S+ ++ G + S + Sbjct: 116 AIEAFQ-RDGVFSPDQYKSVLANAGLTP----ERFRRMQSQDLMLSQLQGAISQSAFVSP 170 Query: 179 --LDQAKRFYFENRSVDYI--VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ A + + E R V Y+ L++ P D A + ++++ +D + + Y Sbjct: 171 SEMEAAAKVWAEERDVRYLEAPLSDFDRPDSVD--EAEIAEYYDNNQDRFVTEPAANVGY 228 Query: 235 ILFDVHEKEKKIEISNDE--LQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAF---- 287 IL V + + + DE ++ ++E +++Y + + R L+ + +++D ++ Sbjct: 229 ILLAVEDFYEPV----DEALVREQFEAVRDEYEVADQSRVSHILIIESDEDSDTSYADRV 284 Query: 288 ----QSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + L G+ F QLA E G + S LG P+ + ++I SL+ Sbjct: 285 GEVARRLDAGEDFGQLAMELSDDVGSAGSGGELGFTDGTAFPE-PMEEAIASLSVGAYSG 343 Query: 340 PVIHGS---FGYVIAHVSNIKPSFTVSFQEVKK--DIANQMR-ITKASEKVKEDYKRLEE 393 PV + F V V+ +P F +E+++ I+N R + A +++K+ + Sbjct: 344 PVETDAGTHFIRVEERVAGERPDFATLREELEQAIKISNAERDLLLAVDELKDLTFNAPD 403 Query: 394 FL----ALGTSM---DEISRREKI-VSIDLPLVD--FAGKDVKGKEVAAIPYKEQLLFRV 443 + ALG S+ +E++R + V D +VD F+ + +G Sbjct: 404 LIGPAEALGFSVAEEEELTRSNGVGVWADERVVDTVFSEEVYRGG--------------- 448 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT-VKTAEEVSSK 502 + + L D ++ V++ E IPAR + L++V ++ KT +TA + Sbjct: 449 -------NNSEVLELADSQFLVVRVNEQIPARQKPLQDVAGEIAAQLKTEARTA--ALTD 499 Query: 503 ANQLVLEYSKEGKNFRDIGKNLG 525 ++V + G+ I LG Sbjct: 500 FTEMVSQRLAAGETLEAIANELG 522 >gi|28198390|ref|NP_778704.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1] gi|182681032|ref|YP_001829192.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M23] gi|28056460|gb|AAO28353.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1] gi|182631142|gb|ACB91918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M23] gi|307579500|gb|ADN63469.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 655 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 140/684 (20%), Positives = 273/684 (39%), Gaps = 98/684 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW--------GLSDALFSVSGSST---------V 43 ML+ +R+ + W+A + +L +PFL G D + + S T Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIGVGGKDDVAQLQASPTWWKSAPAFWP 60 Query: 44 VSV--GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 +S+ RQ + F + + Q + G ++ ++ +K+LD L+ + Sbjct: 61 ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMRL 120 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLS 160 E G+ V IA F K KF+ D + LA+E + + + Y + + Sbjct: 121 VAEGAGVVISDEAVRTIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYESYVRSMM 179 Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI----ADPSNAVLT 214 + ++ +F G P N L++ + R+ + + L PA+ A+ S+ + Sbjct: 180 QLSMIPSAIFDSGFVP-NTELERILALLGQTRNAELVTL-----PALKLDTAEISDMQIK 233 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +W+ ++D++R PE Y+ D + S L+ Y+ + E R Sbjct: 234 EWYAVHRDDFRQPETLSFEYVDLDAAHLPRPTP-SEAMLRKRYDAQQRGEAQNEQRKAAH 292 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI----SLGSFSKEYIPDVS------ 324 ++ +A + K K ++ A + G + + S SK+ D+ Sbjct: 293 ILITAGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGM 352 Query: 325 ----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D++F++ K G+ I FG + + IK + + F+ V+ + A Sbjct: 353 MVKPFEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQL--------A 403 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVS-----IDLPLVDFAG---KDVKGKEVAA 432 +E+ KED + + G MD + + +S + LPL +D G +AA Sbjct: 404 AEQTKEDIDKAFNDVT-GKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSRRDAVG--IAA 460 Query: 433 IPYKEQLLFR----VFGK-DDP--LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 P +++LF GK DP ++ +H+V L + ++ +P D+ E+V+ Sbjct: 461 NPAVQRVLFNHDFIQEGKVSDPIQINPNHSVVL---RVIAHTTEQQLPL-DKVREQVVAA 516 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 V+ D + ++ +S A+ LV K G+ ++ K A L + + + Sbjct: 517 VRAD----RAEKDEASAADALVARLQK-GETLEEVAK---AEKLQITPLTGLQRTAQVPA 568 Query: 546 YDGISQVFSG--PVE---MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLT 595 + +FS PV V +++G Y VF VT G P ++K L Sbjct: 569 FAATRAIFSALSPVAGKPTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLD 627 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVH 619 Q+ + + + ++ ++ VT+H Sbjct: 628 QIEGTLAVHAYVDMMRKRFKVTIH 651 >gi|213026808|ref|ZP_03341255.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 257 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 15/192 (7%) Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + PE R+SYI D + + S+ ++QA Y+++ +++ PE + Sbjct: 1 YYDQNKVRFMTPEQFRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSII 58 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-----FSKEYIPDVSLADSIF 330 + +A +L KG+ F LA+E+ + G +P++ A Sbjct: 59 QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNA---- 114 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 L +KG + VI S G+++A + +I+P+ EV+ DIA +++ EK + Y Sbjct: 115 GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVK----QEKALDAYYA 170 Query: 391 LEEFLALGTSMD 402 L++ ++ S D Sbjct: 171 LQQKVSDAASND 182 >gi|77459915|ref|YP_349422.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] gi|77383918|gb|ABA75431.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] Length = 623 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 88/414 (21%), Positives = 176/414 (42%), Gaps = 36/414 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + V+ + G DA+F + + + V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALMALTGF-DAIFQATTHKNEAAKVNGEEISQNELSQA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q++G ++ L + L L+ L Q E + I Sbjct: 60 VDMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEQSKFAFSEAALDQVI 119 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KFS D F + + G + ++ +ML++ ++G G+ S + Sbjct: 120 LQTPEFQ-VDGKFSSDRFDQVIRQLGYSRMQF----RQMLAQEMLIGQLRAGVAGSGFVT 174 Query: 180 DQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKR 231 D A+ F E ++ D+ LN + ADPS LT +++++ + P+ Sbjct: 175 D-AQVLAFARLEKQTRDFATLNIK-----ADPSAVKLTDDEVKAYYDEHAKEFMTPDQVV 228 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------- 283 I Y+ ++ + +++LQA Y+K S + R L+ N K Sbjct: 229 IDYLELKKSSFFDQVAVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKTTEAQAKAKI 287 Query: 284 DEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 +E L KG+KF LA+E G + + LG ++ + D + +++SL K Sbjct: 288 EEVQARLAKGEKFEALAKEFSQDPGSANNGGDLG-YAGPGVYDPAFEKALYSLNKDQVSE 346 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 PV FG+ + + ++ + +K + +++ + ++ E K+LE+ Sbjct: 347 PV-RTDFGFHLIKLLGVEAPEVPTLASLKDKLTRELKTQQVEQRFVEATKQLED 399 >gi|256823166|ref|YP_003147129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis DSM 16069] gi|256796705|gb|ACV27361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis DSM 16069] Length = 624 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 96/459 (20%), Positives = 190/459 (41%), Gaps = 43/459 (9%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L ++I + L+S L + GL A ++ P F +S D LA++ Sbjct: 71 LRQQIKEQLISEQVLRANLTKAGLTASEQQIKAWAREFPAFQ-IGGVYSADQAKMILAQQ 129 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE----NRSVDYIVLNNR 200 G +E+ + + +++ G+ SN L+ Y++ R V Y+ + Sbjct: 130 GWSEERFRQFARQQIAQE----QLEQGVGASNFALNFEVEAYYQLQEQTRDVGYVRVARE 185 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--EISNDELQAEYE 258 D S++ + +++E+ + + PE + Y+ + E + + ++SN+++ + YE Sbjct: 186 AFSDSVDVSDSEVKEYYEQNQTQFEQPEMVNLRYVRLSLTELSQDLMADVSNEQITSFYE 245 Query: 259 KNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL----KKGKKFIQLAEEQ---------G 304 +NK Y P EI L+ + ++A QSL ++G F +LA+E G Sbjct: 246 QNKANYQDPAEILVAHILIDSSVEDAQSKAQSLLSDIEQGADFAELAKEHSSDTFSGENG 305 Query: 305 KSLSDISLGSFSKE------YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L + S + ++P+ A +L GD T ++ FGY I + + K Sbjct: 306 GQLDWVDAVPTSDDNPTGTGWVPEFEAA--ALALENVGDVTDLVESQFGYHIIKLVDKKA 363 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSIDLPL 417 + + V+ +I Q+ + +A + E L E+ G +++ + + V +++ Sbjct: 364 ADVSPLENVQDEIRQQLALEQAQKIFFEKQAILNEKLFEYGDDLEKFAEQ---VELEIQE 420 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475 KD +A P L + F + + L +++ +K+ P++ Sbjct: 421 TGLFSKD-SATGIADNPV---FLEKAFSASILESTEVSDMIELSQDDIVYLTVKDYQPSQ 476 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + LEEV V K K AE + A Q++ E G Sbjct: 477 VQPLEEVKQIVVDTLKEEKIAEATKAYAEQVLAELEAGG 515 >gi|197118887|ref|YP_002139314.1| hypothetical protein Gbem_2510 [Geobacter bemidjiensis Bem] gi|197088247|gb|ACH39518.1| conserved hypothetical protein [Geobacter bemidjiensis Bem] Length = 526 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/275 (20%), Positives = 116/275 (42%), Gaps = 18/275 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI VV+ + F L+WG + + V K+ Sbjct: 1 MLGIMRKYKQSILIKIVFVVIVLSFIGTIFLVWGRGGDKSANGPAGYAAMVDGTKISMDD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + Q G + E + +GL K + +++ + + +G++ D V Sbjct: 61 FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDKDEV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML----SRTDVVGMFVGG 171 EIA+ P F + F ++ + L + KE+ + + L +R V Sbjct: 121 AAEIAKIPSFQN-NGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKV------K 173 Query: 172 MRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 + + D + F +N V+ Y+ + V ++A L + + ++ ++ PE Sbjct: 174 EKATVTDADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQ 233 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 I+Y L K+ ++ +E Q Y+KN ++Y Sbjct: 234 VSIAYTLVSPAALAAKVSVTPEEAQNYYQKNIDRY 268 >gi|167836273|ref|ZP_02463156.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis MSMB43] Length = 644 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/407 (18%), Positives = 156/407 (38%), Gaps = 43/407 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P L I G+ ++ V +V K+ + F Sbjct: 1 MLDFFRNHQRLMM--FFLLLIVLPGLGIVGIQGFRGFFDENANVAAVNGHKITRAEFDGM 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTL 118 Query: 120 ARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P+ D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKPDGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL A P++A ++ +++ +K + E I Y++ Sbjct: 179 SIARRLTELAEQQREVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT----------------------VE 273 + + S+ +++ Y+ N Y + ++R E Sbjct: 239 YSQAAAVAAAQPSDIDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAE 298 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSI 329 QL+ + D+ F Q+AE+ + + LG ++ + D Sbjct: 299 QLLAEVKAHPDQ----------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDA 348 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KK + + V+ G FG+ I +++KP+ EVK IA ++ Sbjct: 349 AFALKKDEVSGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIAADLK 395 >gi|221215062|ref|ZP_03588029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD1] gi|221164998|gb|EED97477.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD1] Length = 644 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/363 (18%), Positives = 143/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + ++ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V L + + R V +VL + P++A L + Sbjct: 159 YSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTGDYASKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K + PE I Y+++ + ++ +++ Y+ N + + ++R Sbjct: 219 YDAHKQQFATPETATIEYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQIAEKNSQDAPSATK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+G+ + V+ G+ I + +KPS F EVK +IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGEISGVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAA 392 Query: 374 QMR 376 ++ Sbjct: 393 TLK 395 >gi|90416122|ref|ZP_01224055.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium HTCC2207] gi|90332496|gb|EAS47693.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium HTCC2207] Length = 618 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 99/492 (20%), Positives = 192/492 (39%), Gaps = 55/492 (11%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 ++++ + F G+ S SG+ T V V +KV S + + ++ Sbjct: 16 IVILIAIVFAFSGIGSLSMSGSGADTAVIVNGEKVTELSVLRA---------------IS 60 Query: 77 SERARSV----GLDKKILDN----------LVSGATLDQFIEDIGLEADHGRVWGEIARS 122 SE+ R + GLD +L++ L+ L Q + G+ + + Sbjct: 61 SEKRRILNENEGLDASLLEDELIRPQVVEQLIGRRLLSQAAKSGGMGISSRTTSKLLLGT 120 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL---- 178 P F +D +F D+++ + +G +++ ML ++ +V G S + Sbjct: 121 PAFLSEDGRFDQDLYLYTIRAQGYTSGTFLE----MLRDDLLIEQYVRGFVASGFVTASE 176 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 LD + RS Y+ L + D S+ + ++E Y+APE I YI + Sbjct: 177 LDLIASITEQQRSYYYLTLPLQPAVDAVDLSDEQIATYYEDNNQRYQAPEQVIIDYIELN 236 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKKF 296 ++ +++ A YE+ ++ S R ++ P+ E + L G+ F Sbjct: 237 PELFSATQSVAEEQILARYEEQRDSLESTTSRQAAHILLAQPSDDVLAEINEKLAAGEAF 296 Query: 297 IQLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA+E + + LG S + P+ S ++ +L + G+ +P + G + Sbjct: 297 EALAKEYSEDVGSADFGGDLGYTSGDTFPE-SFETALEAL-QVGEVSPPVSTDSGIHLIK 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR-EKIV 411 + +I+ V F + I ++ + E L+E ++ EI+ E Sbjct: 355 LLDIQEKI-VDFDSERARIEQELVTELTDVWLVEKLANLKELSYNAENLAEIATDLELTA 413 Query: 412 SIDLPLVDFAGKDVKGK-EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I P G + V + Q+L + D + L D Y+ +++ + Sbjct: 414 QISEPFTRAGGAGISANPAVYKAAFSSQVLEDSYASD-------VLELGDDRYVVLKLNK 466 Query: 471 SIPARDRKLEEV 482 SIPAR + L EV Sbjct: 467 SIPARQKALSEV 478 >gi|78777490|ref|YP_393805.1| hypothetical protein Suden_1292 [Sulfurimonas denitrificans DSM 1251] gi|78498030|gb|ABB44570.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 487 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 93/373 (24%), Positives = 153/373 (41%), Gaps = 38/373 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 W++ I V F+ WG +S + V VG ++ S+ SQ Sbjct: 17 WISTIAFVG--AGFVGWGQ----YSYGDKAGAVAKVGSVEITMGELQKSYSNIYAQYSQM 70 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 + E+A+S GL + L+ L A + + LE + EI F KD Sbjct: 71 FKGEFDEEKAKSFGLQSQALNFLTQQALVLNLAKSYNLEVSDEELLKEITSKDYFF-KDG 129 Query: 131 KFSHDVFVSRLAREGINEKEY-IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 F DV+ L++ I KEY D ++L R + + + ++D A F + Sbjct: 130 VFDKDVYKDVLSKNNIKTKEYEADIKKELLIRKTLSLLKIQTKESEQKIIDTA--FSIAD 187 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + +DY VLN + I D SN L ++EK ++N+ + I YI D +K E + Sbjct: 188 K-IDYKVLNANQI--ILDTSNESLKSFWEKIQNNFMSEVSYDIKYIKHD----KKSNEYN 240 Query: 250 NDELQAEYEKNK------EKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKFIQ 298 + L Y +NK E P E++ + ++KEA + + S KKG+ I+ Sbjct: 241 DAALNEYYSENKISLKDGEGKIIPFEDAKEKIKYELDAKESKKEALKKYVSYKKGE--IE 298 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 +E Q ++S S SF E +S L F+ I Y I + P Sbjct: 299 PSEIQTATIS-ASNNSFGTEAFEAIS------KLTSTSPFSKPIMVEDNYFIFELVTTNP 351 Query: 359 SFTVSFQEVKKDI 371 + S++E K ++ Sbjct: 352 AKPKSYEEAKSEV 364 >gi|301594637|ref|ZP_07239645.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB059] Length = 606 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 93/433 (21%), Positives = 173/433 (39%), Gaps = 32/433 (7%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 + K LD LVS L Q E +G+ ++ +A+ P ++ +FS ++ + L Sbjct: 67 IQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSI 125 Query: 145 GINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 G+ + I DH KML+ T F S + L Q E R++ + Sbjct: 126 GMTSEGLIASLRQDHALKMLTST-----FADYSLVSKVDLMQIANLQTEQRTLHLASIKL 180 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 A SN T ++ K+++ ++ P + Y++ K ++ EL+ Y K Sbjct: 181 DPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAK 240 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDIS 311 E R V+ ++ D A Q L K G F Q A + + + + Sbjct: 241 FVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKT 300 Query: 312 LGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 G + Y P V + ++ SL K G + + +GY I + + + SF+ K Sbjct: 301 KGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEK 358 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKG 427 + ++ K + + L E + S+D + ++ K I+ L V A ++ Sbjct: 359 PRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN--- 415 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + P + LF K+ + + L +G +WV++++ A + L + + +VK Sbjct: 416 -PYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVK 474 Query: 488 K---DWKTVKTAE 497 D K K A+ Sbjct: 475 AKVIDEKARKAAQ 487 >gi|194289547|ref|YP_002005454.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG 19424] gi|193223382|emb|CAQ69387.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Cupriavidus taiwanensis LMG 19424] Length = 644 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 86/437 (19%), Positives = 170/437 (38%), Gaps = 46/437 (10%) Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP----LFHGKDNKFSHDVFVSRLA 142 K +L+ L+ + + L ++ EI+ P L GKD K ++ L Sbjct: 86 KAVLEQLIQQRVMANAVASEHLTVSDAKLLEEISSLPAIAQLPRGKDGKIDDKAYLQLLQ 145 Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 +G+ +++ L+ + L+++ + R V ++ Sbjct: 146 SQGMTPEQFDARMRFELAMQQLGASVAATAFVPKSLIERLMAARDQQRDVQALLFKPAGY 205 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 A P A L +++ ++ ++ PE ++ Y++ ++ +EL++ YE N Sbjct: 206 TAKVQPDAAALKAYYDSHQQDFSVPEQAKVEYLVLSGEALAASQAVTPEELKSYYESNIA 265 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE--------------------- 301 ++ E R ++ K+A A + K K L E Sbjct: 266 RFRVDEQRRASHILISAPKDAPAAQRQAAKDKATKLLEEVRKHPDTFADVARKNSQDPGS 325 Query: 302 -EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+G L + G+ K + D++++L K+G + V+ FGY I ++ KP+ Sbjct: 326 AEKGGDLGFMGRGALVKPF------EDAMYAL-KEGQISDVVETDFGYHIIKLTGTKPAE 378 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T + V+ ++ ++R K D K E+ A G ++ E + K + L Sbjct: 379 TRPLEAVRTELEAELR------KQFADKKFAEQADAFGNTVYEQADSLKPAADKFKLTIQ 432 Query: 421 AGKDVKGKEVAAIPYK-----EQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIKESIP 473 V + A+ + E+LL +F D +K +T V + + + +I P Sbjct: 433 TADKVTRQPNPALGAQSPLNNEKLLKALFSDDAIKNKRNTEAVQVAPNTLVAARIVAYRP 492 Query: 474 ARDRKLEEVLTDVKKDW 490 A RK EEV V++ + Sbjct: 493 ATVRKFEEVEAQVREGY 509 >gi|238021983|ref|ZP_04602409.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147] gi|237866597|gb|EEP67639.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147] Length = 610 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 86/402 (21%), Positives = 167/402 (41%), Gaps = 41/402 (10%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 RT V I L ++ V F+ +G +L +S + +V VG Q + + + Sbjct: 9 RTPVT-ILLSLIAVSFMGYGFV-SLQGISRDNYIVKVGDQIITRYALDQA---------- 56 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 V N+E A + + L+ A L + + +G+ ++ + +P FH Sbjct: 57 ----VQNTEAAGEPASREAVFQTLLQRAYLLEGAKQLGIVVSDEQIKQIVVDNPQFHDTS 112 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF +F + L +E+ ++ + LS ++ + S+ Q Sbjct: 113 GKFDPKLFQAYLTNTRQSEESFMQAQRENLSVAALL-QTLNSNAVSDFQAQQVINAVLAP 171 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 RS VLN + +A L +++E K +Y P+ + YI+ + K +S Sbjct: 172 RSTRAYVLNPQAFADKVKADDAALKKYYEANKKDYLLPQGAKFEYIVLSPKDIAGKQSVS 231 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-------------SLKKGKKF 296 + E++A Y +K P+ R V ++ K AD A + + ++F Sbjct: 232 DAEIEAAYNASKGS-LKPK-RRVSHILIEAPKSADAATREKARAEAEKIAAEAKAHPEQF 289 Query: 297 IQLA----EEQGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 ++A ++ G + + LG +++ I +L D+ F+L KG+ + V+ FGY + Sbjct: 290 AEIAKRASQDVGSAANGGDLGEIAQDGKIGSKALEDAAFAL-NKGEVSGVVESDFGYHVL 348 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 V++I VS K I + ++ KA ++ + + L E Sbjct: 349 RVTDIA---DVSLAAQKDSIRSSLQAKKAQQEYNKQREALSE 387 >gi|315638232|ref|ZP_07893414.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter upsaliensis JV21] gi|315481768|gb|EFU72390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter upsaliensis JV21] Length = 501 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 89/389 (22%), Positives = 169/389 (43%), Gaps = 37/389 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ V+ FV + WG D ++ + +S+V VG +K+ F F Sbjct: 1 MLTWMQHHKKYLVVTIWISVIAFVGAGVVGWGAYD--YNQNRNSSVAIVGNEKISFVEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q G +Q ++ E A +GL L++L+ L F +++GL A+ V Sbjct: 59 LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E++ + F + F +++ + L + I K Y + + +F + + L Sbjct: 119 ELSAAEEFQNVNGIFDKNIYYAILKQNNILSKNYEQILGDRIILNKLNKIFEFPAKENEL 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A F + + I + + +A NA L Q +E +K++++ + SY L Sbjct: 179 QMLAASYFMQDALEIAKITFDKKD---LAVDENA-LKQLWEAHKNDFKTQK----SYELS 230 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK- 294 + KK S DEL+A Y E NK KY + + + ++ F KE SL+K K Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILD---FELAKEMIIKDLSLEKTKN 287 Query: 295 ----KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD-FTPVIHGSF--- 346 KF+ L ++ D ++ + Y + + + AK D P+I Sbjct: 288 LANEKFVALRNQKDDFQKDFNISEEDQNYPLE------LLAKAKNKDILKPIIWQKCENK 341 Query: 347 ----GYVIAHVSNIKPSFTVSFQEVKKDI 371 G++I ++ P +F+E + ++ Sbjct: 342 ICKDGFIILRLNQTNPVRVKNFEEARAEV 370 >gi|163781832|ref|ZP_02176832.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1] gi|159883052|gb|EDP76556.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1] Length = 437 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 73/446 (16%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +I+K R +A I + V + FL W +FSVS + + R + + S Sbjct: 1 MYGLIQKHKR--LAAIIIAVASLSFLFW-----MFSVSDIKQMFGLQRCAAAVNDYCISL 53 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E +K ++ E R++ + +++L +L++ L Q D+G+ A V I Sbjct: 54 R-EFNHELRKYQSLLEKEELRTL-VKRQVLFSLINRELLYQKALDVGVVASDREVAELIK 111 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F + KFS ++ L R G+ EY + K L+ ++ G S L+ Sbjct: 112 KDPQFQ-EGGKFSFKLYAETLERAGLTPVEYEGYLKKSLTIRKLLRFIKSGTYLSPKELE 170 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 +R S +LN V P+ Sbjct: 171 FQERILSARFSGRAYLLNASSVKLDYKPTL------------------------------ 200 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 +EL+ Y +N EK+ P ++ ++ +A ++ LK+GK Sbjct: 201 ----------EELKEFYSRNAEKFSLPSVKRFRVWETADKGKAQSIYRELKRGKV----- 245 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPS 359 +G SL F +E +P +L D++ +L FT + G + YVI ++ P Sbjct: 246 -PEGGSL-------FKEEELPS-ALKDTVRNLKVTEPFTLTKVKGKY-YVI-YLEESSPG 294 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 SF+E +KDI + K +E V++ + L E L+ G +D R +++ + Sbjct: 295 RVKSFEEARKDIEKLLVEEKKAELVEKKARELRELLSKGARVDHKHVRFDNSTVEEFITL 354 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFG 445 F ++G EV + + E RVFG Sbjct: 355 F---KIQGDEVLRLVFSED---RVFG 374 >gi|239994001|ref|ZP_04714525.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii ATCC 27126] Length = 528 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/411 (18%), Positives = 170/411 (41%), Gaps = 31/411 (7%) Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 D+GL ++ I + P F +F ++ F + L + G ++ D+ +++ + Sbjct: 5 DMGLRVSDKQIRETITQMPEFQFG-GQFDNERFQAILRQNGFQVADFRDYLRVQMTQNQL 63 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + QA + R Y+++++ + ++A + ++ ++ Sbjct: 64 AAALTNSSFALDGEVQQANALQRQTRDAKYVLVSSDEFAGSIEVTDADVEAFYNNNIASF 123 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------ 278 E +++Y+ V + + ++ + + ++ YE N Y E R V ++ Sbjct: 124 DTDEQVKLAYVKLSVDDLKDRVSVDEEAVRTYYENNLGSYGKEEERRVSHILIEAGDDAD 183 Query: 279 NQKEADEAFQS-LKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAK 334 K E+ ++ L G F LAE G F + D + ++ F+L Sbjct: 184 AAKAKAESLKAELDNGADFAALAEADSDDTFSAENGGDLDFITPEMMDPAFDEAAFALQN 243 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + V+ FG+ I ++++K + SF EV +I + + A EK E L E Sbjct: 244 VGDVSDVVETEFGFHIIKLTDLKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNTLAEI 303 Query: 395 -LALGTSMDEISRREKIVSIDLPLVD-------FAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + ++++ + ++DLP+ + A D+ + + + +L+ Sbjct: 304 AFEVPDTLEDAAN-----AVDLPVQESVVFSRNTAPADLSFPGLLDVAFSSELI------ 352 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 D+ L+ D + L D + + ++ E P R + LEEV ++ K K+ E Sbjct: 353 DEGLNSD-IIELDDETVVVARVIEHQPQRTQSLEEVREGIEASVKAEKSKE 402 >gi|197116615|ref|YP_002137042.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type [Geobacter bemidjiensis Bem] gi|197085975|gb|ACH37246.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type [Geobacter bemidjiensis Bem] Length = 324 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 15/160 (9%) Query: 244 KKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK+E IS+ +++A YEKNKEK+ S ++ ++ EA + LKKG F +L Sbjct: 120 KKVEESGNISDADMKAFYEKNKEKFQSGAQIRASHILVKSEAEAKDIQNQLKKGASFEEL 179 Query: 300 AEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ G + LG FSK IPD F L K+G+ + ++ FGY I + Sbjct: 180 AKKHSIDGAAQKGGDLGWFSKGSMIPD--FEKVAFGL-KEGETSGIVKTQFGYHIIKKTG 236 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 +P+ SF++VK +Q++ E+ +E +K+L++ L Sbjct: 237 DRPAGARSFEDVK----DQIKAAMVPERQQETFKKLKDEL 272 >gi|188992771|ref|YP_001904781.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris str. B100] gi|167734531|emb|CAP52741.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris] Length = 656 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 88/418 (21%), Positives = 158/418 (37%), Gaps = 56/418 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E++R ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V G + ++ E R V+ +L A S+A + QW Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLTLMGETRDVELAMLPEPTA-DTAPVSDAQIKQW 235 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 236 YDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295 Query: 277 F------PNQKEADEA--------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 QK +E F +L K +++ G L + G+ Sbjct: 296 ISAGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMV 355 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 K + D++F++ K GD I FGY + + +K SF++V+ +A + Sbjct: 356 KPF------EDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406 >gi|330808576|ref|YP_004353038.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376684|gb|AEA68034.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 623 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 85/409 (20%), Positives = 174/409 (42%), Gaps = 26/409 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + V+ + G DA+F + + S+ V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALMALTGF-DAIFKATTNSNEAAKVNGENISQNELSQA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q++G ++ L L L+ L Q D + I Sbjct: 60 VDMQRRQLMQQLGKDFDASLLDEKMLRDSALKGLIDRKLLLQGAHDAKFAFSEAALDQVI 119 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KFS + F + + G + ++ +ML++ ++G G+ S + Sbjct: 120 LQTPEFQ-VDGKFSPERFDQVIRQLGYSRMQF----RQMLAQEMLIGQLRAGLAGSGFVT 174 Query: 180 DQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 D A+ F E ++ D+ LN + PA ++ + +++++ + P+ I Y+ Sbjct: 175 D-AQVLAFARLEKQTRDFATLNIKADPASVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLE 233 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EA------DEAFQ 288 ++ + +++LQA Y+K S + R L+ N K EA +E Sbjct: 234 LKKASFFDQVSVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKVTEAQAKAKIEEIQA 292 Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L KG+ F LA+E G + + LG ++ + D ++++L K PV Sbjct: 293 RLAKGESFEALAKEFSQDPGSANNGGDLG-YAGPGVYDPEFEKALYALNKDQVSAPV-RT 350 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + + ++ +F +K + +++ + ++ E K+LE+ Sbjct: 351 DFGLHLIKLLGVEAPEVPTFASLKDKLTRELKTQQVEQRFVEATKQLED 399 >gi|66769563|ref|YP_244325.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. 8004] gi|66574895|gb|AAY50305.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. 8004] Length = 656 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 88/418 (21%), Positives = 158/418 (37%), Gaps = 56/418 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E++R ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V G + ++ E R V+ +L A S+A + QW Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLTLMGETRDVELAMLPEPTA-DTAPVSDAQIKQW 235 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 236 YDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295 Query: 277 F------PNQKEADEA--------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 QK +E F +L K +++ G L + G+ Sbjct: 296 ISAGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMV 355 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 K + D++F++ K GD I FGY + + +K SF++V+ +A + Sbjct: 356 KPF------EDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406 >gi|289664180|ref|ZP_06485761.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 656 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 90/416 (21%), Positives = 156/416 (37%), Gaps = 56/416 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L VPFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMVPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V G + ++ + E R V+ +L V A S+A + QW Sbjct: 178 SLQQSVIPQAVAESGFA-TKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQW 235 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 +E + ++R PE I Y+ + + L+ YE+ K ++ P+ R ++ Sbjct: 236 YEGHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295 Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 +A F +L K ++ G L + G+ Sbjct: 296 ISAGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMV 355 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K GD I FGY + + +K SF++V+ +A Sbjct: 356 KPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404 >gi|226329062|ref|ZP_03804580.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198] gi|225202248|gb|EEG84602.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198] Length = 276 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 115/250 (46%), Gaps = 15/250 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR + KI L V+ + F++ G+ LFS SG + V K+ S ++ Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRSQLEQAY 59 Query: 61 KQELGMISQKIG----FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +Q + Q +G + +SE + + + ++ LD L++ A LDQF + +G+ A ++ Sbjct: 60 QQRRAQLQQDMGENFAALASSEEGQKL-IRQQALDLLINQALLDQFAQKLGISAGDQQIR 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + KF + +V L I+ D + + + + + ++ ++ Sbjct: 119 DAIFALPYFQ-TNGKFDNKKYVDLLKGNNIDA----DAFAEGIRQNLINQQLKFSIQGTD 173 Query: 177 LLLD-QAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 LD + K F ++R+V L+ + S+ + ++E+ + APE +I Sbjct: 174 FALDSEVKEFAGLMLQSRNVRLASLDIQPFLEKETASDEEVKAFYEQNNQMFIAPEQFKI 233 Query: 233 SYILFDVHEK 242 SYI + ++ Sbjct: 234 SYIQLNAQKR 243 >gi|307610560|emb|CBX00148.1| hypothetical protein LPW_18931 [Legionella pneumophila 130b] Length = 316 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 34/312 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + Q+L ++ A L ++L+ +++ Q G E + Sbjct: 61 RRTRAQQDLPQMT----------AADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQA 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + P F +D FS + L+ + + + + F+G S Sbjct: 111 NAAIVQIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGT---S 166 Query: 176 NLLLDQAKRF---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 L D+ KRF Y + R DY+ + + A S + ++ ++ + E + Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN----------Q 280 Y+L +H+ + +I+IS DE+++ YE+NK Y +P V ++F P + Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286 Query: 281 KEADEAFQSLKK 292 ++ADE + LKK Sbjct: 287 QKADEVYSDLKK 298 >gi|226944452|ref|YP_002799525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ] gi|226719379|gb|ACO78550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ] Length = 624 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 85/406 (20%), Positives = 169/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AKI + V+ V + G L S S S V K+ + Sbjct: 1 MLQNIRDNSQGWIAKIIIGVIIVLLALTGFDAILTSTSNSQNAAEVNGAKIGLAELNREV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++G ++ + L L L+ L Q E + I Sbjct: 61 ETQRRQLLQQLGKDFDASQLNEGLLRNAALSGLIERKLLLQGAEAADFAFSQNALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D +F + F +A+ G + + + +ML + ++G G+ S D Sbjct: 121 QTPEFQ-VDGRFDANRFDQVIAQMGYSRPQ----FRQMLEQEMLIGQLRAGLAGSGFATD 175 Query: 181 Q--AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + E ++ D+ L PA + V+ ++E++ +Y E + YI Sbjct: 176 REIGDFVRLERQTRDFYTLTLSADPAQVTVGDEVVQAYYEEHASSYMTSEQLVVEYIELK 235 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLK-- 291 ++EI +++LQA Y+ +E E R ++ ++++A + LK Sbjct: 236 RDAFFDQVEIRDEDLQALYQ--REIANLAEQRQAAHILLEVNDKLSEEQAKAKLEELKAR 293 Query: 292 --KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSF 346 KG+ F LA+E + G PDV + ++SL K+G+ + + F Sbjct: 294 IDKGEDFAALAKEFSQDPGSADKGGDLGYAGPDVYDPAFEKVLYSL-KEGEVSSPVRSEF 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + + +++ SF +K+ + ++++ + + E + LE Sbjct: 353 GWHLIKLLDVQAPEIPSFDTLKEKLVHELKAEQVEQAFVEASRDLE 398 >gi|289668772|ref|ZP_06489847.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 656 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 90/416 (21%), Positives = 156/416 (37%), Gaps = 56/416 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L VPFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMVPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V G + ++ + E R V+ +L V A S+A + QW Sbjct: 178 SLQQSVIPQAVAESGFA-TKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQW 235 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 +E + ++R PE I Y+ + + L+ YE+ K ++ P+ R ++ Sbjct: 236 YEGHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295 Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 +A F +L K ++ G L + G+ Sbjct: 296 ISAGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMV 355 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K GD I FGY + + +K SF++V+ +A Sbjct: 356 KPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404 >gi|219681828|ref|YP_002468214.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471530|ref|ZP_05635529.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624671|gb|ACL30826.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 623 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 99/453 (21%), Positives = 192/453 (42%), Gaps = 58/453 (12%) Query: 89 ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 +L L++ L+Q+ +++ LE + + I SP+F K+NKFS + +++ L Sbjct: 91 VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 EYI+ K ++ ++ + + SN +L + ++ + S I+ + D Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202 Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 PS N +F+K +DN+ PE +I+++ ++ KI N E+ Y KN Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIKN 260 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315 +Y + E R + N+++A L + F ++A+EQ S D +G Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367 S + IPD + A+ L KK + VI ++I ++ + EV Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQ 376 Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 D+ N+++ K S +K D ++E L +I + D+ Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422 Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479 K K V IP +Q +F ++F KD + H + L ++IK+ + Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 E V ++ K + +K +E K+ +++ + ++ Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514 >gi|94263261|ref|ZP_01287077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] gi|93456344|gb|EAT06468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] Length = 630 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 82/394 (20%), Positives = 176/394 (44%), Gaps = 29/394 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++R+ +R+ + + + ++ + F+ W + G TV V + + F + Sbjct: 1 MLALLRRKARSPIVLVAIAIIILVFIFW--LPQMGGDGGPGTVAVVNEEPLSLREFQRRY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + L + G V+ + ++G+ +++L L+ L Q + GL A V EI Sbjct: 59 NETLSQYRDEFG-VIPPDLLEALGIREQVLQQLIQEQLLLQSAKKTGLPATSSEVQREIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F + +F + + L ++ KE+ L R ++ VG + S+ + Sbjct: 118 SMGEFSDEAGRFDLERYRQTLTAARLSVKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVR 177 Query: 181 QAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q RF++++ V Y+ L + PS L +F++ +Y +P R+ Y+LF Sbjct: 178 Q--RFHYDHDQVRLAYLRLAAADFKPASTPSAEELEAFFQENSQDYLSPPMVRLDYLLFT 235 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----------PNQKEADEA- 286 + + I + A YE N+E++ PE R ++ ++KE A Sbjct: 236 PEREPEAIAEEE--IVAYYEANREEFSLPEQRRARHILIRSADNDSPELRASRKEQLRAV 293 Query: 287 FQSLKKGKKFIQL----AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + + G F +L +E+ + D LG F ++ + + + ++ F+L + G+ + ++ Sbjct: 294 LERARAGHDFAELVALYSEDARAAGGD--LGFFQRDEMVE-PIEEAAFAL-EPGEISDIV 349 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 FG+ I + ++P+ + EV+ +IA++++ Sbjct: 350 ETRFGFHILKLDELQPARQLELAEVRDEIADRLQ 383 >gi|293399048|ref|ZP_06643213.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62] gi|291610462|gb|EFF39572.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62] Length = 512 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/246 (19%), Positives = 107/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N + + +L+ A L Q + +G+ ++ IA P FH + KFS Sbjct: 58 --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIADDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|296313658|ref|ZP_06863599.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria polysaccharea ATCC 43768] gi|296839799|gb|EFH23737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria polysaccharea ATCC 43768] Length = 512 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S GS +V VG +K+ S IN Q Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHS-INVTMQ----------- 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N + A + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 58 --NEQAAGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ S+ +Q + NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDTQAEQLVKLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + YE+ Sbjct: 236 KNAYEE 241 >gi|148284059|ref|YP_001248149.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str. Boryong] gi|146739498|emb|CAM79204.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str. Boryong] Length = 485 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 42/356 (11%) Query: 39 GSSTVVSVGRQK-VPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVS 95 SS +V+ + K + S F+ + K + I Q NS++ + + +L NL+S Sbjct: 7 NSSDIVTFTKAKNITKSEFMQALKLAMHQIPQ------NSDQNILTQNNIRELVLSNLIS 60 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q + L V+ I S F+ N F ++F + L I+E +Y D Sbjct: 61 THVLEQLAHEYNLTLSTAAVFKFIQNSKAFNNNQN-FDINIFRNILKNLHISEPQYFDQA 119 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV--LNNRHVPAIAD-PSNAV 212 TK ++ F+ ++L E R++ + L N + + D PS+ Sbjct: 120 TKQQLSEILLHQFINNNYVPSILTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQ 179 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-----FSP 267 L +++ + + PE + ISYI+ D + + K+ + N L+ Y + +++ F+ Sbjct: 180 LQEFYNNNQSKFEKPEQRHISYIVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTK 239 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD------------ISLGSF 315 I V + +Q D+ F I L E++ S S+ ++L + Sbjct: 240 NIAEVREKYVNHQ--VDKLFNDT------ITLLEDEVASGSNSSEIAKMLNVKLLTLNNV 291 Query: 316 SKEYIPD----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 +K+ + + ++ D+IF+L + P+ S +I + I PS F V Sbjct: 292 TKQKLANNKILSNVTDAIFALEEHETSYPLDVSSKMLIIVSIQKIIPSAVEKFDNV 347 >gi|322508302|gb|ADX03756.1| ppiD [Acinetobacter baumannii 1656-2] Length = 601 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 92/433 (21%), Positives = 174/433 (40%), Gaps = 32/433 (7%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 + K LD LVS L Q E +G+ + ++ +A+ P ++ +FS ++ + L Sbjct: 62 IQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSI 120 Query: 145 GINEKEYI-----DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 G+ + I DH KML+ T F S + L Q E R++ + Sbjct: 121 GMTSEGLIASLRQDHALKMLTST-----FADYSLVSKVDLMQIANLQTEQRTLHLASIKL 175 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 A S+ T ++ K+++ ++ P + Y++ K ++ EL+ Y K Sbjct: 176 DPYKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAK 235 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDIS 311 E R V+ ++ D A Q L K G F Q A + + + + Sbjct: 236 FVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKT 295 Query: 312 LGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 G + Y P V + ++ SL K G + + +GY I + + + SF+ K Sbjct: 296 KGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEK 353 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKG 427 + ++ K + + L E + S+D + ++ K I+ L V A ++ Sbjct: 354 PRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIESLNGVTLATQN--- 410 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + P + LF K+ + + L +G +WV++++ A + L + + +VK Sbjct: 411 -PYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVK 469 Query: 488 K---DWKTVKTAE 497 D K K A+ Sbjct: 470 AKVIDEKARKAAQ 482 >gi|165976428|ref|YP_001652021.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876529|gb|ABY69577.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 625 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/306 (20%), Positives = 126/306 (41%), Gaps = 27/306 (8%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 ++ +L+ LV L Q+ +++ L ++ EI SP+F +D KFS+D++ L Sbjct: 86 FNQSVLNGLVDEELLRQYAKELKLGISAEQIKSEIVNSPVFQ-QDGKFSNDLYQQTLRSN 144 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 G++ D Y +++ + G+ S+ + + + + V + A Sbjct: 145 GLS----ADGYAAIVNEGMLFSQIQEGVIGSDFNVPEQEALLAKLLLQKRQVRLANYSIA 200 Query: 205 IADPSNAVLTQWFEKYKDNYRA----PEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + A + +KY D +++ PE + Y+ + +++++++++ YEKN Sbjct: 201 KEATNQAASAEELQKYYDAHKSELIEPEKLTVEYVTLTPTDVANNVQVNDEQVKTYYEKN 260 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---------EQGKSLSDIS 311 K Y + + N+ +A + +K G F +LA+ QG L Sbjct: 261 KADYATKGETRFAHIQLANETDAKAVAEQVKNGADFAELAKTKSTDKLSAAQGGDLGWAK 320 Query: 312 LGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 G+F K + SL D G + V++ Y I V K + ++VK Sbjct: 321 AGTFPKAFEAAAASLQD--------GQVSAVVNVDGAYHIIKVLERKAETVIPLEQVKDQ 372 Query: 371 IANQMR 376 I +R Sbjct: 373 ITKTIR 378 >gi|253700332|ref|YP_003021521.1| hypothetical protein GM21_1709 [Geobacter sp. M21] gi|251775182|gb|ACT17763.1| conserved hypothetical protein [Geobacter sp. M21] Length = 526 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/275 (20%), Positives = 116/275 (42%), Gaps = 18/275 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI VV+ + F L+WG + +V K+ Sbjct: 1 MLGIMRKYKQSILIKIVFVVIVLSFVGTIFLVWGRGGEGSADGPGGYAATVDGTKISMDD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + Q G + E + +GL K + ++V + + +G++ + V Sbjct: 61 FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNKDEV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML----SRTDVVGMFVGG 171 EIA+ P F + F +++ L + KE+ + + + +R V Sbjct: 121 AAEIAKIPSFQ-NNGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKARNKV------K 173 Query: 172 MRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 + + D + F +N V+ Y+ + V ++A L + + ++ ++ PE Sbjct: 174 EKATVTDADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQ 233 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 I+Y L K+ ++ +E Q Y+KN ++Y Sbjct: 234 VSIAYTLVSPAALAAKVSVTPEEAQNYYQKNIDRY 268 >gi|15597002|ref|NP_250496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1] gi|107101237|ref|ZP_01365155.1| hypothetical protein PaerPA_01002270 [Pseudomonas aeruginosa PACS2] gi|9947788|gb|AAG05194.1|AE004606_8 peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1] Length = 621 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 75/406 (18%), Positives = 169/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ D F + I + Y + +ML + ++G G+ + + Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174 Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + + E ++ D+ L + + + S+ + ++E +K + PE + Y+ Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVEL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289 ++++ ++L+A Y+K S + L+ N K DE ++ Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293 Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + + Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + ++ S + +K + ++++ ++ E K LE Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398 >gi|224418500|ref|ZP_03656506.1| cell binding factor 2 precursor major antigen PEB4A [Helicobacter canadensis MIT 98-5491] gi|253827813|ref|ZP_04870698.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142030|ref|ZP_07804223.1| cell binding factor [Helicobacter canadensis MIT 98-5491] gi|253511219|gb|EES89878.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131061|gb|EFR48678.1| cell binding factor [Helicobacter canadensis MIT 98-5491] Length = 271 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 13/157 (8%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK--------F 296 K+++S+ E++ Y +NK K+ PE V+ ++ ++ +A LKK K F Sbjct: 108 KVKVSSSEIEKFYNQNKTKFVQPETAKVKHILVSSEADAKNIIADLKKAGKNVASKFEEF 167 Query: 297 IQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVS 354 + + G + + LG +K + +P+ AD+ F L KG +T + FGY + +V Sbjct: 168 AKAKSKDGSAQNGGELGWIAKGQVVPE--FADAAFKL-NKGQYTQTPVKTQFGYHVIYVD 224 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +P+ T++ ++V I +++TK E V+++ + L Sbjct: 225 DKRPTTTLALKDVSGQIEQNLKLTKFQENVRKEGQDL 261 >gi|325128356|gb|EGC51240.1| hypothetical protein NMXN1568_0938 [Neisseria meningitidis N1568] Length = 512 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/247 (20%), Positives = 110/247 (44%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A GL + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGLSRDAVFQSLLQRAYLKQGSKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|254240198|ref|ZP_04933520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192] gi|126193576|gb|EAZ57639.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192] Length = 621 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 75/406 (18%), Positives = 169/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ D F + I + Y + +ML + ++G G+ + + Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174 Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + + E ++ D+ L + + + S+ + ++E +K + PE + Y+ Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVEL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289 ++++ ++L+A Y+K S + L+ N K DE ++ Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293 Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + + Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + ++ S + +K + ++++ ++ E K LE Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398 >gi|294627916|ref|ZP_06706495.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597830|gb|EFF41988.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 656 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 54/417 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157 ED G+ V IA P F D KFS D + + LA +G + ++ + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVSD 177 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 L ++ + + ++ + E R V+ +L A S+A + QW+ Sbjct: 178 SLQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPAA-DAAPVSDAQIKQWY 236 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 237 DGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILI 296 Query: 278 ---PNQKEADEA-----------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317 P+ A F +L K +++ G L + G+ K Sbjct: 297 SAGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVK 356 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + D++FS+ K G+ I FGY + + +K SF++V+ +A + Sbjct: 357 PF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406 >gi|241663130|ref|YP_002981490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12D] gi|240865157|gb|ACS62818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12D] Length = 646 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/407 (16%), Positives = 164/407 (40%), Gaps = 24/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + S V + + + Sbjct: 1 MLDFVR-THRRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ L + L + ++ I Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTIL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D F + +V L+ + + ++ + LS+ + V Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + + R V ++ A + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIQVRDQQREVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL----- 290 E K+I ++ ++++ Y++N ++ + E R ++ P+ + + + Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299 Query: 291 ------KKGKKFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339 K F LA+ + G + LG K +P +++F+L + GD + Sbjct: 300 VLAEVRKNPASFADLAKKYSGDPGSAAQGGELGFLGKGATVP--PFENALFALKQPGDIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V+ FG+ I + +K + VK ++ ++R A++K E Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSE 404 >gi|261378747|ref|ZP_05983320.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea ATCC 14685] gi|269144903|gb|EEZ71321.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea ATCC 14685] Length = 512 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 22/281 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S GS +V VG +K+ S I Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHS---------------INT 54 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A+ + + +L+ A L Q + +G+ ++ I P FH KF Sbjct: 55 AMQNEQAKGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 SH + L++ ++E ++++ + ++V + G+ S+ +Q + NR++ Sbjct: 115 SHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDAQAEQLVKLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N ++A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 ++ YE+ + + E+L F +K A E +KK Sbjct: 235 VKNAYEERMARLPA----EGEKLSFEKEKAAVENELKMKKA 271 >gi|299770348|ref|YP_003732374.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. DR1] gi|298700436|gb|ADI91001.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. DR1] Length = 621 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 105/530 (19%), Positives = 208/530 (39%), Gaps = 39/530 (7%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+K+ Q + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 61 SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTST-----FSDYS 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S + L Q E R++ + SN T ++ K+++ ++ + Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQSSVDV 228 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284 Y++ K + ELQ Y K E RTV+ ++ QK A Sbjct: 229 DYVVVSPSLMAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341 E + ++ G F Q A + + S + G + Y P V + ++ SL K G + Sbjct: 289 EVYAKIQGGLTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQP 347 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + +GY I + + S SF+ K + ++ K + + L E + S+ Sbjct: 348 VKTQYGYHIIE-AETQASQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSL 406 Query: 402 DEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + + + K ++ L V A ++ + P + LF K+ + + L + Sbjct: 407 EAVVQEVKGTKVESLNGVTLATQN----PYLSDPNVKIKLFNDDVKNGDRNASSNIQLAN 462 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 G +WV++++ A + L + + + K K + V +K ++ E+ Sbjct: 463 GDTVWVKVRDYHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEF 512 >gi|218892241|ref|YP_002441108.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa LESB58] gi|218772467|emb|CAW28249.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa LESB58] Length = 621 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ D F + I + Y + +ML + ++G G+ + + Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174 Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + + E ++ D+ L + + + S + ++E +K + PE + Y+ Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289 ++++ ++L+A Y+K S + L+ N K DE ++ Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293 Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + + Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + ++ S + +K + ++++ ++ E K LE Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398 >gi|83718610|ref|YP_442650.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis E264] gi|83652435|gb|ABC36498.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis E264] Length = 632 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/391 (17%), Positives = 151/391 (38%), Gaps = 41/391 (10%) Query: 17 FLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 FL+++ +P L I G+ S+ V +V K+ + F +Q++ Q +G Sbjct: 3 FLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLRQQVDQARQMLGAQF 62 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKF 132 +++ + +++LD L+ L + + L A G V + P+ D F Sbjct: 63 DAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLSDPVVASLKKADGSF 122 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + LA +G+ +Y + L+ + V + + + R V Sbjct: 123 DAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSVARRLTELAEQQREV 182 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 ++L + P++A ++ +++ +K + E I Y+++ + S+ + Sbjct: 183 QQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVYSQAAAAAAAQPSDID 242 Query: 253 LQAEYEKNKEKYFS-PEIRT----------------------VEQLVFPNQKEADEAFQS 289 ++ Y+ N +Y + ++R EQL+ + D+ Sbjct: 243 VKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQLLAEVKAHPDQ---- 298 Query: 290 LKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F Q+AE+ + + LG ++ + D KKG+ + V+ G Sbjct: 299 ------FAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISGVVQGD 352 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 FG+ I +++KP+ EVK I ++ Sbjct: 353 FGFHILKATDLKPAVVKPLAEVKDSIVADLK 383 >gi|15617076|ref|NP_240289.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386976|sp|P57550|PPID_BUCAI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|25403639|pir||G84985 peptidylprolyl isomerase (EC 5.2.1.8) [imported] - Buchnera sp. (strain APS) gi|10039141|dbj|BAB13175.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 623 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 98/453 (21%), Positives = 192/453 (42%), Gaps = 58/453 (12%) Query: 89 ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 +L L++ L+Q+ +++ LE + + I SP+F K+NKFS + +++ L Sbjct: 91 VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 EYI+ K ++ ++ + + SN +L + ++ + S I+ + D Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202 Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 PS N +F+K +DN+ PE +I+++ ++ KI N E+ Y +N Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIRN 260 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315 +Y + E R + N+++A L + F ++A+EQ S D +G Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367 S + IPD + A+ L KK + VI ++I ++ + EV Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQ 376 Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 D+ N+++ K S +K D ++E L +I + D+ Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422 Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479 K K V IP +Q +F ++F KD + H + L ++IK+ + Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 E V ++ K + +K +E K+ +++ + ++ Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514 >gi|255021292|ref|ZP_05293340.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus ATCC 51756] gi|254969155|gb|EET26669.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus ATCC 51756] Length = 516 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 6/240 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 ML+ RK S++W AKI L V+ + F++WG+S LFS SG V V K+ + F Sbjct: 1 MLDAFRKLSQSWAAKIVLAVIALSFVLWGVSGYLFSNDSGEQVVAKVDGDKISAAIFQQR 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q G ++ A+ +L+ L+ L +GL+ + +I Sbjct: 61 LHDAREHYAQVFGPEAAAQMAKDPSFAPDVLNGLIDNLLLAHEARKLGLQVPDSALAQKI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 F K KFS + L G+ E + + +L + V + S Sbjct: 121 EGISAFADK-GKFSRAKYQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVA--SRK 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A + E R + + R A P++A + ++++++ +Y P + Y+ F Sbjct: 178 DAESAWSWSQEYRDARVVQIPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTF 237 >gi|311087368|gb|ADP67448.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087867|gb|ADP67946.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 623 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 98/453 (21%), Positives = 192/453 (42%), Gaps = 58/453 (12%) Query: 89 ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 +L L++ L+Q+ +++ LE + + I SP+F K+NKFS + +++ L Sbjct: 91 VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 EYI+ K ++ ++ + + SN +L + ++ + S I+ + D Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202 Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 PS N +F+K +DN+ PE +I+++ ++ KI N E+ Y +N Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIRN 260 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315 +Y + E R + N+++A L + F ++A+EQ S D +G Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367 S + IPD + A+ L KK + VI ++I ++ + EV Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQ 376 Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 D+ N+++ K S +K D ++E L +I + D+ Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422 Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479 K K V IP +Q +F ++F KD + H + L ++IK+ + Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 E V ++ K + +K +E K+ +++ + ++ Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514 >gi|116049755|ref|YP_791438.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa UCBPP-PA14] gi|313110502|ref|ZP_07796387.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 39016] gi|115584976|gb|ABJ10991.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa UCBPP-PA14] gi|310882889|gb|EFQ41483.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 39016] Length = 621 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ D F + I + Y + +ML + ++G G+ + + Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174 Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + + E ++ D+ L + + + S + ++E +K + PE + Y+ Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289 ++++ ++L+A Y+K S + L+ N K DE ++ Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293 Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + + Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + ++ S + +K + ++++ ++ E K LE Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398 >gi|254234899|ref|ZP_04928222.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa C3719] gi|296389804|ref|ZP_06879279.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PAb1] gi|126166830|gb|EAZ52341.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa C3719] Length = 621 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ D F + I + Y + +ML + ++G G+ + + Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVT 174 Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + + E ++ D+ L + + + S + ++E +K + PE + Y+ Sbjct: 175 DNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289 ++++ ++L+A Y+K S + L+ N K DE ++ Sbjct: 235 KKSSFFDQVKVKQEDLEALYQKEIAN-LSEQRDAAHILIEVNDKVGDEQAKAKIDEIKAR 293 Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + + Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + ++ S + +K + ++++ ++ E K LE Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398 >gi|21241842|ref|NP_641424.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306] gi|21107222|gb|AAM35960.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306] Length = 656 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/416 (21%), Positives = 156/416 (37%), Gaps = 56/416 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPAWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRTRFEQARMQERQRQGEKFDPRSFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V G ++ ++ + E R V+ +L A S+A + QW Sbjct: 178 SLQQSVIPQAVAESGFATTSEF-ERLLKLMGETRDVELAMLPPPAA-DAAPVSDAQIKQW 235 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 236 YDGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHIL 295 Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 +A F +L K +++ G L + G+ Sbjct: 296 ISAGTDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMV 355 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K G+ I FGY + + +K SF++V+ +A Sbjct: 356 KPF------EDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404 >gi|317403066|gb|EFV83601.1| peptidyl-prolyl cis-trans isomerase D [Achromobacter xylosoxidans C54] Length = 656 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/408 (18%), Positives = 164/408 (40%), Gaps = 21/408 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR + R W+ I L+++ F + G+ + + +V Q + + F + Sbjct: 1 MFEFIR-SHRRWMQFILLLLIVPSFFLVGIQGYESFMRKEPELATVAGQPISRAEFDQAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + L + +L+ L++ L D + IA Sbjct: 60 RNQLEQYRQRLGAQFDPAVIDTPQLREALLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ R ++ Sbjct: 120 AIPEVQ-DNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPAEVVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V + + A + W++ K + PE ++ Y++ + Sbjct: 179 SLETALTQQRTVQLRRFAAADFRSQVTVTPADIQAWYDANKQQLQVPEQVQVQYLVLNEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287 + +++ +++L + YE+NK ++ PE R ++ A E A Sbjct: 239 AATEGVQVKDEDLTSYYEQNKNRFGQPERRRASHIMIEVPAGASEDARKAARAKAEALAT 298 Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ +F +LA ++ G + + LG + + L +IFS +K + V+ Sbjct: 299 QAAANPAQFAELARKNSQDAGSAANGGDLGWLAPGML-SGPLEKAIFSQSKD-QVSGVVE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ + V+ I+P+ EVK I ++R A+ + E +L Sbjct: 357 SPSGFHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQL 404 >gi|21230443|ref|NP_636360.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21112006|gb|AAM40284.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 656 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/418 (20%), Positives = 157/418 (37%), Gaps = 56/418 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E++R ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V G + ++ E R V+ +L A S+A + QW Sbjct: 178 SLQQSVIPQAVAESGFA-TKSEFERLLTLMGETRDVELAMLPEPTA-DTAPVSDAQIKQW 235 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 236 YDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHIL 295 Query: 277 FPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 +A F +L K +++ G LS + G+ Sbjct: 296 ISAGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLSWVEKGTMV 355 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 K + D++F++ K GD I FGY + + +K SF++V+ +A + Sbjct: 356 KPF------EDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406 >gi|114321433|ref|YP_743116.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1] gi|114227827|gb|ABI57626.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1] Length = 484 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 97/487 (19%), Positives = 191/487 (39%), Gaps = 70/487 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR A + WVA ++V+ +PF++ G + F+ V V ++ Sbjct: 1 MLEAIRSAVKGWVAWAVVIVISLPFIVVG-GYSYFAGDDGRVVAEVEGVEITREQVAERA 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKIL-----DNLVSGATLDQFIEDIGLEADHGRV 115 +Q+ + + G + + G+D+ L D L+ A L + D L V Sbjct: 60 RQQQRQLEEFFGDL------GAAGVDESTLRREARDGLIEEALLHVLVTDGNLRVGDRAV 113 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + +FH + FS + + L+ + D Y +M+ R +V F + S Sbjct: 114 AQRIRQQDIFH-QGGTFSMERYQQLLSANRLTP----DQYEEMVRRDLLVEQFQRAVTGS 168 Query: 176 NLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 L+ D + + R + Y+V++ P S+A + +E+ + Y AP R Sbjct: 169 ALVRDWDTARLAALDRQQRDIHYLVVSADEAPDAV--SDAAVQAHYEENAERYTAPRQVR 226 Query: 232 ISYILFDVHEKE-------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + YI ++H+ E + E++ D YE + ++ VE L + + D Sbjct: 227 LEYI--ELHQDELAPDDSTRFFELTEDAANVAYEDPDSLQSAADLLGVE-LSYSDWVPED 283 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + + L + + + + + +D + + + G Sbjct: 284 GSAEGL------------------------WGRPEVVEAAFSDDVLEFGYNSELIEL--G 317 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 S ++ V +++ + + EV +I ++ + + + + LE +A G M E+ Sbjct: 318 SGHALLLRVDDVREAEPLGLDEVADEIRRELAREQGRLQARNLGELLEREIAAGAEMAEL 377 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV---ALPDG 461 + RE L + G D +G A+P Q++ R F P+ +V ++ G Sbjct: 378 AEREG-----LEVRSAEGLD-RGTLSDAVPT--QVVDRAFRLPRPVDGQPSVGGTSVQGG 429 Query: 462 SYMWVQI 468 Y VQ+ Sbjct: 430 DYAVVQV 436 >gi|308389331|gb|ADO31651.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis alpha710] gi|325136276|gb|EGC58884.1| hypothetical protein NMBM0579_1013 [Neisseria meningitidis M0579] gi|325208178|gb|ADZ03630.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 512 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 22/281 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 ++ +E+ + + E + L F +K A E +KK Sbjct: 235 VKNAFEERVARLPANEAK----LSFEQEKAAVENELKMKKA 271 >gi|325202068|gb|ADY97522.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] Length = 512 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 122/281 (43%), Gaps = 22/281 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 ++ +E+ + + E + L F +K A E +KK Sbjct: 235 VKNAFEERVARLPANEAK----LSFEQEKAAVENELKMKKA 271 >gi|152986261|ref|YP_001348850.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7] gi|150961419|gb|ABR83444.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7] Length = 621 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/406 (18%), Positives = 168/406 (41%), Gaps = 22/406 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ D F + I + Y + +ML + ++G G+ + + Sbjct: 121 QTPEFQ-VDGKFNADRF-----DQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVT 174 Query: 180 DQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + + E ++ D+ L + + + + + ++E +K + PE + Y+ Sbjct: 175 DNELQSFARLERQTRDFATLAVKADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVEL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------- 289 ++++ ++L A Y+K S + L+ N K +DE ++ Sbjct: 235 KKSSFFDQVKVKQEDLDALYQKEIAN-LSEQRDAAHILIEVNDKTSDEQARAKIDEIKAR 293 Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + + Sbjct: 294 LAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPY 352 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + ++ S + +K + ++++ ++ E K LE Sbjct: 353 GYHLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLE 398 >gi|268680048|ref|YP_003304479.1| peptidyl-prolyl cis-trans isomerase D,- like protein [Sulfurospirillum deleyianum DSM 6946] gi|268618079|gb|ACZ12444.1| putative peptidyl-prolyl cis-trans isomerase D,- like protein [Sulfurospirillum deleyianum DSM 6946] Length = 486 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 88/403 (21%), Positives = 173/403 (42%), Gaps = 56/403 (13%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V F+ WG D + +++V VG + + F +++ + + Sbjct: 17 WISTIAFVG--AGFVGWGAYD--LNQDRAASVAKVGNRTISVQEFQSAYASHYNFYNNLL 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E+A +GLDK ++ +L++ L + +++GL + +P F ++ Sbjct: 73 QGQLTQEQAEQMGLDKIVMSSLINQTLLLNYADELGLLVSKEETMERLKNNPNFQ-ENGV 131 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ-AKRFYFENR 190 F+ +++ + L I +Y K + T + +F + S+ ++ A F+ E+R Sbjct: 132 FNKELYYTILKSNRIKPNDYEHELAKEILHTKLENIF--KLPASDKEIEMFASAFFMEDR 189 Query: 191 -SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 +++ I LN V A + A ++EK K NY + SY L ++ K Sbjct: 190 LAIETISLNANEVSADEEAIKA----YWEKNKANYLTQK----SYTLELLNLPPSKTPFD 241 Query: 250 NDELQAEYEKNKEKYFSPEIRTV------EQLVFP-----NQKEADEAFQSLKKGKKFIQ 298 + L+A Y + K Y + + + E+L ++K A E+F + KKG + Sbjct: 242 DKTLEAFYAEEKHNYQHADGKLMLFEEAKEKLAIDLRLKNDKKSALESFLAFKKG----E 297 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL------AKKGDFTPVIHGSFGYVIAH 352 + + K + D DS+F + AK PVI + YV+ Sbjct: 298 INATETKVVYD----------------TDSLFPMDKIQIAAKDEVLKPVIINN-QYVVIR 340 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEF 394 V IK +S++ KK+ +N + T E + K+ + ++E+F Sbjct: 341 VKEIKFPEPMSYEMAKKEASNDLLKTLKEEALEKKAHAKVEQF 383 >gi|222056790|ref|YP_002539152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] gi|221566079|gb|ACM22051.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] Length = 308 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E++ +I + ELQ Y KNKEK+ + E ++ + EA E + LK G F +LA++ Sbjct: 124 EEQAKIGDAELQDFYNKNKEKFRTGEQVRASHILVKTEPEAQEILKQLKAGGNFEELAKK 183 Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 Q + LG F K +P+ +++F L K+G + ++ +GY I ++ +P Sbjct: 184 QSIDAAAAKGGDLGWFGKGSMLPE--FENAVFGL-KEGATSGIVQTKYGYHIIKLTGKRP 240 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + EVK Q++ EK +E +K+L+E L G + Sbjct: 241 AGVRPLDEVK----EQIKAAILPEKQQEVFKKLKEDLKKGAKV 279 >gi|262278967|ref|ZP_06056752.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus RUH2202] gi|262259318|gb|EEY78051.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus RUH2202] Length = 621 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 113/546 (20%), Positives = 212/546 (38%), Gaps = 71/546 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP---FSSFIN 58 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+K+ Q + V E ++ + K LD LVS L Q E +G+ ++ Sbjct: 61 SYKE------QYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQ 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-----DHYTKMLSRTDVVGMFVGGM 172 +A+ P ++ +FS ++ + L G+ + I DH KML+ T F Sbjct: 115 MLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSQGLISSLRQDHALKMLTST-----FSDYS 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S + L Q E R++ + SN T ++ K+++ ++ + Sbjct: 169 LVSKVDLMQIANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQASVDV 228 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEAD 284 Y++ K + ELQ Y K E RTV+ ++ QK A Sbjct: 229 DYVVVSPSLMAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAK 288 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341 E + ++ G F Q A + + S + G + Y P V + ++ SL K G + Sbjct: 289 EVYAKIQGGLTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQP 347 Query: 342 IHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + +GY I +N PSF A + R+T EK K +A Sbjct: 348 VKTQYGYHIIEAETQANQIPSFE----------AEKARLTAEVEKNK---------VATV 388 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---------PY--KEQLLFRVFG-- 445 S S E IV D ++ ++VKG +V ++ PY + ++F Sbjct: 389 YSDTVNSLNETIVGND--SLEAVVQEVKGTKVESLNGVTLATQNPYLSDPNVKIKLFNDD 446 Query: 446 -KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 K+ + + L +G +W+++++ A + L + + + K K + V +K Sbjct: 447 VKNGDRNASSNIQLANGDTVWIKVRDYHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIA 506 Query: 505 QLVLEY 510 ++ E+ Sbjct: 507 TMLAEF 512 >gi|309781952|ref|ZP_07676683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA] gi|308919296|gb|EFP64962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA] Length = 635 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/392 (16%), Positives = 157/392 (40%), Gaps = 23/392 (5%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + L+++F F+ +G+ + S V + + + +++ + Q +G Sbjct: 4 VLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARVREQTERLRQMLGAQY 63 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDNKF 132 + + + + +LD ++ L + L + ++ I + P D F Sbjct: 64 DPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTILQIPAVAALRKPDGSF 123 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + +V L+ + + ++ + LS+ + V L+D+ + + R V Sbjct: 124 DQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKSLVDRLIQVRDQQREV 183 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 ++ A + + + +++ ++ + PE + Y++F E K+I ++ ++ Sbjct: 184 QALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVFSGEEMMKQIPVTPEQ 243 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL-----------KKGKKFIQL 299 L+ Y++N ++ + E R ++ P+ + + + K F L Sbjct: 244 LKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEEVLAEVRKNPASFADL 303 Query: 300 AE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+ + G + LG K +P +++F+L + GD + V+ FG+ I + Sbjct: 304 AKKYSGDPGSAAQGGELGFLGKGATVP--PFENALFALKQPGDISDVVQSDFGFHIIKLE 361 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +K + VK ++ ++R A++K E Sbjct: 362 EVKGGGVQPLEAVKPELERELRTQLANKKYSE 393 >gi|239998983|ref|ZP_04718907.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|268594831|ref|ZP_06128998.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268548220|gb|EEZ43638.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|317164277|gb|ADV07818.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 512 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N + + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 58 --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|253698852|ref|YP_003020041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251773702|gb|ACT16283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 336 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 11/157 (7%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E+ IS+ +++A YEKNKEK+ S ++ ++ EA + LK G F +LA++ Sbjct: 142 EESANISDADMKAFYEKNKEKFQSGAQVRASHILVKSEAEAKDVQNQLKSGASFEELAKK 201 Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 G + LG FSK IPD F L K+G+ + ++ FGY I + +P Sbjct: 202 HSIDGAAQKGGDLGWFSKGSMIPD--FEKVAFGL-KEGETSGIVKTQFGYHIIKKTGDRP 258 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + SF++VK +Q++ E+ +E +K L++ L Sbjct: 259 AGARSFEDVK----DQIKAAMVPERQQETFKNLKDEL 291 >gi|194098675|ref|YP_002001737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|240016542|ref|ZP_04723082.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA6140] gi|240112969|ref|ZP_04727459.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|240118019|ref|ZP_04732081.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|240123573|ref|ZP_04736529.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|240125755|ref|ZP_04738641.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|240128277|ref|ZP_04740938.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|260440465|ref|ZP_05794281.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2] gi|268599050|ref|ZP_06133217.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|268603732|ref|ZP_06137899.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|268682203|ref|ZP_06149065.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|268684354|ref|ZP_06151216.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|268686675|ref|ZP_06153537.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|291043765|ref|ZP_06569481.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|193933965|gb|ACF29789.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|268583181|gb|EEZ47857.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|268587863|gb|EEZ52539.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|268622487|gb|EEZ54887.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|268624638|gb|EEZ57038.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|268626959|gb|EEZ59359.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|291012228|gb|EFE04217.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 512 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N + + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 58 --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|240080666|ref|ZP_04725209.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19] gi|268596788|ref|ZP_06130955.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268550576|gb|EEZ45595.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 512 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N + + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 58 --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|59801181|ref|YP_207893.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA 1090] gi|240115723|ref|ZP_04729785.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|268601403|ref|ZP_06135570.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|59718076|gb|AAW89481.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA 1090] gi|268585534|gb|EEZ50210.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] Length = 512 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/246 (19%), Positives = 106/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQ------------ 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 N + + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 58 --NEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|219682383|ref|YP_002468767.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622116|gb|ACL30272.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086780|gb|ADP66861.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 623 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 98/453 (21%), Positives = 191/453 (42%), Gaps = 58/453 (12%) Query: 89 ILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 +L L++ L+Q+ +++ LE + + I SP+F K+NKFS + +++ L Sbjct: 91 VLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQ-KNNKFSKERYLNYLTSINST 149 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 EYI+ K ++ ++ + + SN +L + ++ + S I+ + D Sbjct: 150 NHEYINIIKKKINTENL----IHTISKSNFILKKEEKNIIKLLSQKRII---KKAIVKID 202 Query: 208 PS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 PS N +F+K +DN+ PE +I+++ ++ KI N E+ Y +N Sbjct: 203 PSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFV--ELKTDNFKIHCENKEIYDWYIRN 260 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG----KSLSDISLGSF 315 +Y + E R + N+++A L + F ++A+EQ S D +G Sbjct: 261 ITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWI 320 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------- 367 S + IPD + A+ L KK + VI ++I + + EV Sbjct: 321 SIDLIPDEIKHAN----LNKKNQISDVIPFHNEFLIVKLDETQIGTQKKIYEVFDSIKKQ 376 Query: 368 -----KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 D+ N+++ K S +K D ++E L +I + D+ Sbjct: 377 IKQKKSLDLYNELK-NKISNNLKNDPGKIERILKEN-------------NILIQETDWFD 422 Query: 423 KDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKL 479 K K V IP +Q +F ++F KD + H + L ++IK+ + Sbjct: 423 KKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQHF 481 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 E V ++ K + +K +E K+ +++ + ++ Sbjct: 482 ENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQ 514 >gi|154148500|ref|YP_001406386.1| putative peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter hominis ATCC BAA-381] gi|153804509|gb|ABS51516.1| putative peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter hominis ATCC BAA-381] Length = 487 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 52/320 (16%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V F+ WG D + S S++V VG + F N + + + Sbjct: 17 WISTIAFVG--AGFVGWGAYD--LNKSRSTSVAKVGDTAISIKEFQNKYSEVYNYLKSIS 72 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 E+A+ + LD+ ++ L+ A L F +D+G+ A V EI S F D K Sbjct: 73 DGKFTDEQAKKMHLDEMAINALIQDAILLNFAKDLGINASDEEVAREIINSDNFKT-DGK 131 Query: 132 FSHDVFVSRLAREGINEKEY---------IDHYTKMLS----------------RTDVVG 166 FS ++ + + G+++ EY +D K +S D V Sbjct: 132 FSKKLYENAMKNAGLSQNEYEKELKKVIILDKLKKAISIKPNADDIEMLTASEFMQDKVE 191 Query: 167 MFVGGMRPSNLLL--DQAKRFYFENRSVDYIVLNNRHVPA-IADPSN-----AVLTQWFE 218 + + S + D+ K F+ +N+S Y+ + A +P N L ++FE Sbjct: 192 IAIVDQNVSTITFNDDELKDFWEKNKS-KYLTQKTYEMDAYFVEPENKNVDEKTLREFFE 250 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFS---PEIRTVE 273 K +D YR K +S+ +E + ND L ++ K++ +KY +I T E Sbjct: 251 KNRDLYRNENDKLMSF-------EEANASVLNDYL-TDFNKDEAIKKYLDVKKGKIFTNE 302 Query: 274 QLVFPNQKEADEAFQSLKKG 293 +LV + E + Q++K G Sbjct: 303 KLVLNDNDEIIKNLQNMKIG 322 >gi|240014107|ref|ZP_04721020.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI18] gi|240121669|ref|ZP_04734631.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID24-1] gi|254493775|ref|ZP_05106946.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291] gi|226512815|gb|EEH62160.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291] Length = 512 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/246 (20%), Positives = 107/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE-----QADG- 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 64 --------GSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|94969792|ref|YP_591840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] gi|94551842|gb|ABF41766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] Length = 654 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 91/424 (21%), Positives = 167/424 (39%), Gaps = 47/424 (11%) Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRIS 233 NL+ Q + F DY L+ + +PS+A + W+E +KD ++ PE ++I Sbjct: 185 NLVRQQQTKVKF-----DYASLSLADIEKGINPSDAEMKAWYEAHKDQFKDSLPEKRKIK 239 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEA------ 286 Y+ + K ++ S+ ++Q Y +K ++ P+ TV+ LV Q + Sbjct: 240 YVSV-IGSKLPGVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQGADAKTDAAAKA 298 Query: 287 -----FQSLKKGKKFIQLAEE--QGKSLSDISL-----GSFSKEYIPDVSLADSIFSLAK 334 + + G F +LA++ K D +L G+ KE+ D SLA K Sbjct: 299 KAEDYLKQARGGANFGELAKKYSDDKGTGDSTLEVTPQGNLVKEF-KDASLA------GK 351 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + FGY I + +P+ S EVK IA I +K + ++ + Sbjct: 352 TGDILGPVKTQFGYHIIKIQKNEPAGARSLDEVKSQIA----IVMGGQKAADAAQKAADN 407 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 L + + + + DF + + I Q + VF + D Sbjct: 408 LRNSARVQGLDKAAAAAGDTVETTDFV---TQSSLLPGIGQAPQFMNAVFKANAKSGAD- 463 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 VA G Y ++ + P E+ V++ +K K + KA +L + ++ Sbjct: 464 -VAPITGGYAVYEVTDVQPPATPTFEQAKAQVEQQFKAGKAQTLIVQKAQELA-DRARTE 521 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS--QVFSGPVEMVKCFPIENGLSYV 572 + + K G ++ T+ + + G S VF+G + P++ G + + Sbjct: 522 HDLKKAAKEAGVTVKTSEMVTQSSQVPDVGSLSGPSFTAVFAGKTGDI-IGPVQGGRNAI 580 Query: 573 VFKV 576 V V Sbjct: 581 VIAV 584 >gi|254252159|ref|ZP_04945477.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] gi|124894768|gb|EAY68648.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] Length = 645 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/363 (18%), Positives = 142/363 (39%), Gaps = 32/363 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDAAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVREALMSDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + + L + + R V +VL A P++A L + Sbjct: 159 YSLALQQIPASIISSAFTPKSLAQRLSELAAQQREVQSLVLKTSDYAAKVQPTDAQLAAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRT---- 271 ++ +K ++ P I Y+++ + ++ +++ Y+ N + + ++R Sbjct: 219 YDAHKQSFATPATATIQYLVYSPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIF 278 Query: 272 ------------------VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 EQL+ + D+ Q +K + A + G L I+ G Sbjct: 279 IAAASSASAADKAAAKAKAEQLLAEVKAHPDQFAQIAEKNSQDAPSAAK-GGDLGFITRG 337 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + D D+ F+L K+G+ + V+ G+ I + +KP+ F EVK IA Sbjct: 338 STAGGKAFD----DAAFAL-KQGEVSGVVESDLGFHILKATEVKPAVLKPFAEVKDQIAA 392 Query: 374 QMR 376 ++ Sbjct: 393 DLK 395 >gi|325982743|ref|YP_004295145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] gi|325532262|gb|ADZ26983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] Length = 627 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 134/674 (19%), Positives = 278/674 (41%), Gaps = 102/674 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR-QKVPFSSFINS 59 M +++ + R V ++ L + +PF+ WG+ + GS V+V +++ + + Sbjct: 1 MFDLVNRKKR--VVQVILGLAVLPFMFWGVES--YRNDGSEGYVAVVEGEEISRREYEQA 56 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + +G +S + + +L+ L+ L Q G ++ I Sbjct: 57 LRDHHERMRAMLGANFDSAMLDTSEVRSSVLERLIQQRLLYQEAVKNGFVVLDSQLIKTI 116 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F K+NKFS + L +G+ T V+ F +R + LLL Sbjct: 117 QDVQAFQ-KNNKFSKQQYEELLRNQGL---------------TPVI--FESRVR-NELLL 157 Query: 180 DQAKRFYFEN--------RSVDYIVLNNRHVP----------AIADPSNAVLTQWFEKYK 221 Q Y EN V Y+ R + + A P A ++ ++E++K Sbjct: 158 QQLLDGYSENAITPRTTTERVQYLSEVRREISQSKITPDQFLSQAIPEEADISAYYEQHK 217 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 ++ PE ++ Y++ + + K +S++ + + +++ ++ E R ++ Sbjct: 218 TDFDLPERAKVEYLVLSLEKVAKNEFVSDEAINTYFLEHQSEFGQSEERKASHILISVSP 277 Query: 282 EADEAFQSLKKGK-------------KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVS 324 +A E + + + K +F ++A+E G ++ LG F++ + S Sbjct: 278 DAPEEEKQMAREKAKRILEQVKQNPDQFAEIAKEHSDDPGSAMRGGDLGFFARGVMVK-S 336 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-- 382 D IFS+ + + + ++ FG I ++ IK +EV++ I N +++ Sbjct: 337 FEDEIFSM-QLDEISDIVETDFGLHIIKLTAIKEERHPDLEEVREQIENTLKVEMVESVF 395 Query: 383 -KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 ++ ED+ + G S+ + + +++ + D+ KD K AI E LL Sbjct: 396 GEIVEDFSNV--VYEQGESLQAAAEKFELI---IEKSDWITKDSKE---PAILANENLLS 447 Query: 442 RVFGKDDPLSKDHTVAL---PDGSYMWVQIKESIPARDRKL----EEVLTDVKKDWKTVK 494 +F + + +T A+ PD +++ +I E PA + L +E++ +KK+ Sbjct: 448 AIFSDEVISNNRNTEAIEVNPD-TFVSARIIEYKPATSQSLAVVKDEIVEKLKKEMAVSM 506 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE--NKFFGYDGISQV 552 E K +L + G+ D+ + A L++ Q +D+E F ++V Sbjct: 507 AVAEGQEKLVRL-----QAGEVLDDVAWD-DAQLISYMQPQGLDHEVLRAIFR----AEV 556 Query: 553 FSGPVEMVKCFPIENG-----LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 PV + P E G +S V+ ++ K P + F L QM+ ++ + S + Sbjct: 557 DELPVYVGAVKP-EGGFNLIRISKVIEPDSDEKTPP----ENFAKQLQQMITQEEISSYL 611 Query: 608 AYLKSQYSVTVHDN 621 A ++ +Y V + N Sbjct: 612 AAIRQRYDVKIIQN 625 >gi|254785729|ref|YP_003073158.1| peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901] gi|237683903|gb|ACR11167.1| putative PPIC-type PPIASE domain protein, peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901] Length = 624 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/339 (21%), Positives = 146/339 (43%), Gaps = 29/339 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFV-PFLIWGLSDA-LFSVSGSSTVVSVGRQ--KVPFSSF 56 ML+ +R + + + +++ F+ P +I G+ + L SV+G+ V GR K S Sbjct: 3 MLQSVRDNLKGTIVSVIVILFFILPMVITGVGSSFLGSVAGTDAAVVDGRSITKKELSRE 62 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 I KQ L ++Q+ G +++ + L + +L+ L A + E G+ + Sbjct: 63 IYMQKQRL--LAQQ-GVDPSADYLKDENLAQPVLERLTRKAAVLAAAEKGGMAVSEKSIN 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 G I F D KFS + S LAR G+ Y + + ++G G+ S+ Sbjct: 120 GAIVGQEEFK-VDGKFSSQQYRSLLARVGLTPAAYKAATAEEM----MLGQLNKGLELSS 174 Query: 177 LLLDQAKR----FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + ++ K E RS + + + + ++A + +++ + +R PE + Sbjct: 175 FVTEKEKSEIIAIINEKRSFFTVKIPADDLADSIEVTDAEIAAYYQANEAEFREPEKLSV 234 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEA--DEAFQS 289 YI V+ + + +++++YE+ E + +PE+ TV ++ A E Sbjct: 235 DYIELSVNSIAATVTVDEADVRSQYEQEAESFDATPEL-TVAHILLEEDSSAKLTEVQAK 293 Query: 290 LKKGKKFIQLAE---------EQGKSLSDISLGSFSKEY 319 L G +F +A+ +QG L + G+F + + Sbjct: 294 LAAGDEFADVAKAYSDDAGSRDQGGELGVLVAGAFPEAF 332 >gi|325914922|ref|ZP_08177254.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria ATCC 35937] gi|325538815|gb|EGD10479.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria ATCC 35937] Length = 685 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 90/422 (21%), Positives = 156/422 (36%), Gaps = 64/422 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S W Sbjct: 30 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPTWW 88 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 89 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 148 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V I F D KFS D + + LA +G + D + Sbjct: 149 LGAEDAGIVIGDATVRDYITNIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 206 Query: 159 LSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAVLT 214 + V+ V G + ++ + E R V+ +L PA A S+A + Sbjct: 207 SLQQSVIPQAVAESGFA-TKTEFERLLKLMGETRDVELAMLP---APAADTAPVSDAQIK 262 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 QW++ + ++R PE I Y+ + L+ YE+ K ++ P+ R Sbjct: 263 QWYDTHAQDFRQPETVSIEYVELNAATMPPATAADEATLRKRYEEEKARFVEPDQRLASH 322 Query: 275 LVFP----------------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 ++ Q AD F +L K +++ G L + Sbjct: 323 ILITAGSDAAAQKAAEAKAAKLAADAKQPGAD--FAALAKANSQDPGSKDAGGDLGWVEK 380 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G+ K + D++FS+ K GD I FGY + + +K SF++V+ A Sbjct: 381 GTMVKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQFA 433 Query: 373 NQ 374 + Sbjct: 434 AE 435 >gi|322419880|ref|YP_004199103.1| hypothetical protein GM18_2369 [Geobacter sp. M18] gi|320126267|gb|ADW13827.1| hypothetical protein GM18_2369 [Geobacter sp. M18] Length = 525 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/244 (19%), Positives = 107/244 (43%), Gaps = 10/244 (4%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84 FL+WG + S +V K+ F S+ + G+ Q G + E + +G Sbjct: 30 FLVWGKGGSDGQGG-KSYAATVNGTKISLDEFQKSYYRTRGLYEQIYGRSLTPEMEKQMG 88 Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 + K +++LV + + +GL+A V EIA+ P F K+ F ++ L Sbjct: 89 IKKLTINSLVDNVLIHAEAKKMGLKASKEEVAAEIAKIPAFQ-KNGAFDFGIYQQTLKAN 147 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS----VDYIVLNNR 200 I K++ + + + ++ ++ + + D + F+ + + Y+ + Sbjct: 148 RITPKDFEESQEQEM----LLQKARNKVKDAAAVTDAEVKAAFKKQKDKIDLAYVSFSPA 203 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 V ++ LT + + +++ ++ PE ++Y L + K+ ++ +E+Q Y+KN Sbjct: 204 DVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVAYALVSPAQFAAKVSVTPEEVQTYYQKN 263 Query: 261 KEKY 264 ++Y Sbjct: 264 IDRY 267 >gi|261401210|ref|ZP_05987335.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ATCC 23970] gi|269208789|gb|EEZ75244.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ATCC 23970] Length = 512 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/247 (20%), Positives = 107/247 (43%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S A S G+ +V VG +K+ Q + Sbjct: 12 AQVLLGLIALTFVGFGVSTA--SRPGADYIVQVGDEKIS---------------EQSLNA 54 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V +E+A + + +L+ A L Q + +G+ ++ I P FH KF Sbjct: 55 AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETE 234 Query: 253 LQAEYEK 259 ++ YE+ Sbjct: 235 VKNAYEE 241 >gi|304387500|ref|ZP_07369689.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC 13091] gi|304338387|gb|EFM04508.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC 13091] Length = 512 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/246 (21%), Positives = 109/246 (44%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+S S G+ +V VG +K+ S N+ M +++ G Sbjct: 12 AQILLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA------MQNEQAGG 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S A + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 64 GSPSRDA--------VFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIHDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + YE+ Sbjct: 236 KNVYEE 241 >gi|254480567|ref|ZP_05093814.1| SurA N-terminal domain family protein [marine gamma proteobacterium HTCC2148] gi|214039150|gb|EEB79810.1| SurA N-terminal domain family protein [marine gamma proteobacterium HTCC2148] Length = 626 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 32/250 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP--FSSFIN 58 ML+ IRK S+ +AKI + ++ V F +G+ L GS+ G + P +N Sbjct: 1 MLQDIRKNSQGTLAKIIVGIIVVAFAGFGIESILLGGGGSAVAEVNGEEITPQELQQAVN 60 Query: 59 SWKQEL-GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + K++L M+ + + + ++ L ++ + L+S L Q +D+GL +V Sbjct: 61 NQKRQLISMMGENLDPAMLDDQL----LSQQAMQTLISRKLLVQSADDMGLTVSDTQVGA 116 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-----VGMFVGGM 172 I F D +FS +++ +RL G +T +L +T + VG G+ Sbjct: 117 LIGSMEQFQ-LDGQFSPELYRARLGEAG---------FTPLLFKTTLTDDIKVGQVRSGL 166 Query: 173 RPSNLL----LDQAKRFYFENRSVDYIVL---NNRHVPAIADPSNAVLTQWFEKYKDNYR 225 S L+ R E R + YI + + I+DP + Q++ D++ Sbjct: 167 AGSEFATPGELELNARIVGEQRDLRYITIPLETHASEAVISDPQ---IQQYYADNSDSFL 223 Query: 226 APEYKRISYI 235 + E + YI Sbjct: 224 SEEAVELDYI 233 >gi|187928946|ref|YP_001899433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] gi|187725836|gb|ACD27001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] Length = 646 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/407 (15%), Positives = 165/407 (40%), Gaps = 24/407 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + S V + + + Sbjct: 1 MLDFVR-THRRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ L + L + ++ I Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVVRANLTISNEKIRDTIL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D F + +V L+ + + ++ + LS+ + V Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+++ + + R V ++ A + + + +++ ++ + PE + Y++F Sbjct: 180 LVERLIQVRDQQREVQTLLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSL----- 290 E K+I ++ ++++ Y++N ++ + E R ++ P+ + + + Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299 Query: 291 ------KKGKKFIQLAE----EQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFT 339 K F +LA+ + G + LG K +P +++F+L + GD + Sbjct: 300 VLAEVRKNPASFAELAKKYSGDPGSAAQGGELGFLGKGATVP--PFENALFALKQPGDIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V+ FG+ I + +K + VK ++ ++R A++K E Sbjct: 358 DVVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSE 404 >gi|58580660|ref|YP_199676.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425254|gb|AAW74291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 675 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 58/417 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 20 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 79 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157 ED G+ V IA F D KFS D + + LA +G + ++ Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALA-QGTPPRTPAQFDALVRD 196 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215 L ++ + + ++ + E R V+ +L PA+ A S+A + Q Sbjct: 197 SLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTAPVSDAQIKQ 253 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W++ + ++R PE I Y+ + L+ YE+ K ++ P+ R + Sbjct: 254 WYDGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 313 Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + +A F +L K +++ G L + G+ Sbjct: 314 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 373 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K GD I FGY + + +K SF++V+ +A Sbjct: 374 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLA 423 >gi|330963316|gb|EGH63576.1| periplasmic folding chaperone [Pseudomonas syringae pv. actinidiae str. M302091] Length = 627 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 94/420 (22%), Positives = 175/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ + + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q F E ++ D+ L +PA DPS +T ++++ + Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLT---LPA--DPSAVKVTDDEVKAHYDQHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 +PE + YI K+ + +D+LQA Y+K S + R L+ N K DE Sbjct: 227 SPEQVVLDYIELKKSSFFDKVTVKDDDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285 Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 Q L KG+ F LA+E G S LG F+ + + D + +++++L Sbjct: 286 QAKAKVEEIQQRLAKGESFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403 >gi|15677110|ref|NP_274262.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria meningitidis MC58] gi|7226478|gb|AAF41619.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria meningitidis MC58] gi|316985097|gb|EFV64050.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis H44/76] gi|325140532|gb|EGC63053.1| hypothetical protein NMBCU385_0927 [Neisseria meningitidis CU385] gi|325200131|gb|ADY95586.1| conserved hypothetical protein [Neisseria meningitidis H44/76] Length = 512 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|84622593|ref|YP_449965.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366533|dbj|BAE67691.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 656 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 58/417 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157 ED G+ V IA F D KFS D + + LA +G + ++ Sbjct: 120 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALA-QGTPPRTPAQFDALVRD 177 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215 L ++ + + ++ + E R V+ +L PA+ A S+A + Q Sbjct: 178 SLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTAPVSDAQIKQ 234 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W++ + ++R PE I Y+ + L+ YE+ K ++ P+ R + Sbjct: 235 WYDGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 294 Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + +A F +L K +++ G L + G+ Sbjct: 295 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 354 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K GD I FGY + + +K SF++V+ +A Sbjct: 355 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLA 404 >gi|298504157|gb|ADI82880.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type [Geobacter sulfurreducens KN400] Length = 313 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E+++++S++EL+ Y++NK+K+ S ++ ++K A E + LK G F +LA++ Sbjct: 126 EEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVKELKGGANFEELAKK 185 Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + LG FSK +P+ F L K+G+ + ++ FGY I V+ +P Sbjct: 186 HSIDSAAAKGGDLGWFSKGNMVPE--FEKVAFGL-KEGETSGIVRTQFGYHIIKVTGKRP 242 Query: 359 SFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390 + +F+EVK I + K E K+KED K+ Sbjct: 243 AGERTFEEVKDQIKAAVLPGKQQEVFQKLKEDIKK 277 >gi|39995127|ref|NP_951078.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39981889|gb|AAR33351.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] Length = 313 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 10/155 (6%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E+++++S++EL+ Y++NK+K+ S ++ ++K A E + LK G F +LA++ Sbjct: 126 EEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVKELKGGANFEELAKK 185 Query: 303 Q---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + LG FSK +P+ F L K+G+ + ++ FGY I V+ +P Sbjct: 186 HSIDSAAAKGGDLGWFSKGNMVPE--FEKVAFGL-KEGETSGIVRTQFGYHIIKVTGKRP 242 Query: 359 SFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390 + +F+EVK I + K E K+KED K+ Sbjct: 243 AGERTFEEVKDQIKAAVLPGKQQEVFQKLKEDIKK 277 >gi|330959391|gb|EGH59651.1| periplasmic folding chaperone [Pseudomonas syringae pv. maculicola str. ES4326] Length = 627 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 87/415 (20%), Positives = 175/415 (42%), Gaps = 34/415 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ ++ + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSE 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + D Q + F E ++ D+ L PA ++ + ++++ + +PE Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLTLPADPAAVKVTDDEIKAHYDQHAKEFMSPEQV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------E 282 + YI K+++ +++LQA Y+K + + R L+ N K + Sbjct: 232 VLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LAEQRRAAHILIEVNDKLNEEQAKAK 290 Query: 283 ADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 +E Q L KG+ F LA+E G S LG ++ + + D + D++++L K Sbjct: 291 IEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEDALYALNKDQVS 349 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 PV FG+ + + ++ +F +K + N ++ + +K E K+LE+ Sbjct: 350 QPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTNDLKSQQVEQKFVEVTKQLED 403 >gi|167627763|ref|YP_001678263.1| hypothetical protein Fphi_1536 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597764|gb|ABZ87762.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 477 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 27/223 (12%) Query: 97 ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 A LDQ I + AD R + I +P+F KD KFS D + Sbjct: 72 AVLDQMINQYLILADAQRHNIVVSKLALQSAIFTNPIFFDKDGKFSADKLKQVV------ 125 Query: 148 EKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNR 200 EYI + ++LS+ M + + + D K+ Y N+ ++Y+ L+ Sbjct: 126 --EYIGGMNRLEQILSQNIQATMIPKTIADTVITTDYEKKQLASIYLVNKKIEYLKLSPV 183 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + PS L ++ +K++Y P K ISY + + K I+NDELQ YE + Sbjct: 184 DFQSQVKPSQQDLESYYNAHKNDYINPAQKNISYFIISKEDFVSKNNINNDELQEYYETH 243 Query: 261 KE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 +E K F + Q + N++ A E F + + ++ AE Sbjct: 244 RELFKDFDNNTKASIQKIIQNRR-ALEQFNNYSQNIDSVKFAE 285 >gi|166710933|ref|ZP_02242140.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 656 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 89/417 (21%), Positives = 157/417 (37%), Gaps = 58/417 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERAR-------SVGLDKK----------ILDNLVSGATLD 100 L +I F E+AR D + +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERKRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKM 158 ED G+ V IA F D KFS D + + LA +G + D + Sbjct: 120 LGAEDAGIVIGDATVREYIANIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 159 LSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215 + V+ V + ++ + E R V+ +L PA+ A S+A + Q Sbjct: 178 SLQQSVIPQAVADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTAPVSDAQIKQ 234 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W++ + ++R PE I Y+ + L+ YE+ K ++ P+ R + Sbjct: 235 WYDGHTQDFRQPEAVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 294 Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + +A F +L K +++ G L + G+ Sbjct: 295 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 354 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K GD I FGY + + +K SF++V+ +A Sbjct: 355 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLA 404 >gi|329908176|ref|ZP_08274836.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae bacterium IMCC9480] gi|327546752|gb|EGF31691.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae bacterium IMCC9480] Length = 642 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/404 (18%), Positives = 159/404 (39%), Gaps = 22/404 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M E +R R + L+++ VP F + GL + + VG Q + + + Sbjct: 1 MFEFVRTHKRLM--QFLLLLIIVPSFALVGLGSYKSFGDAENVIAKVGGQPITQVEYDAA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++++ Q G + + + + ILDNL++ L L + I Sbjct: 59 QREQMARFKQMFGAQFDPKMFDTPEARQGILDNLIAQRALSVEAARQHLSVADAALQQSI 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 G D KF + + S LA +G+ Y + ++ + + Sbjct: 119 TGIAGLVGPDGKFDGERYRSLLAMQGMTPAMYEQRLRQDMAVQQLNSAIQSTAFAPKTVA 178 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + + R+V ++ A + + +L +++K + PE I Y++ Sbjct: 179 TRLSDINDQERTVQELLFKPADYAAKVNVTADMLKAYYDKNARQFEVPEQATIQYVVLSS 238 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAF 287 +I +++ E+ YE+NK+ + E R ++ +K +A++ Sbjct: 239 DALASQIAVTDQEVADFYEQNKKSFGVDEQRRASHILINLKKGASATEKAAAKAKAEQVL 298 Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++K F ++A E+QG + L F K + +++F L K + + ++ Sbjct: 299 AQVRKAPGDFAKIAKASSEDQGSAPEGGDLDFFGKGAMTP-PFEEAVFKL-KLNEISGLV 356 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FG+ I V+ IKP+ + +VK I ++ KA+++ E Sbjct: 357 ESDFGFHIIEVTAIKPASFRTLDQVKPQIVADIKRQKAAKQYSE 400 >gi|254805018|ref|YP_003083239.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha14] gi|254668560|emb|CBA06033.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha14] gi|319410487|emb|CBY90848.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase D) [Neisseria meningitidis WUE 2594] Length = 512 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|237752063|ref|ZP_04582543.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376630|gb|EEO26721.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 271 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 11/156 (7%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GK----KFIQL 299 K+++ + E+ Y +NK K+ PE ++ ++ EA LKK GK KF L Sbjct: 108 KVKVLDSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAELKKAGKNVAGKFDSL 167 Query: 300 AEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A E+ G + + LG +K + +P+ A++ F L K T + FGY + V + Sbjct: 168 AREKSKDGSAQNGGELGYIAKNQVVPE--FANAAFKLQKGAYTTTPVKSQFGYHVILVED 225 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 KP+ T++ +++K I +++ K E++K++ + L Sbjct: 226 KKPAGTIALKDIKGQIEQNLKLKKFQEEIKKEGEEL 261 >gi|330878776|gb|EGH12925.1| periplasmic folding chaperone [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 627 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 88/415 (21%), Positives = 172/415 (41%), Gaps = 34/415 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ + + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 S + D Q F E ++ D+ L P+ ++ + ++++ + +PE Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLTQPADPSAVKVTDDEVKAHYDQHAKEFMSPEQV 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--- 287 + YI K+ + +++LQA Y+K S + R L+ N K DE Sbjct: 232 VLDYIELKKSSFFDKVTVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDEQAKAK 290 Query: 288 -----QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 Q L KG+ F LA+E G S LG F+ + + D + +++++L K Sbjct: 291 VEEIQQRLAKGESFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALNKDQVS 349 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 PV FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ Sbjct: 350 QPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403 >gi|218768240|ref|YP_002342752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis Z2491] gi|121052248|emb|CAM08573.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis Z2491] gi|254670088|emb|CBA04992.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha153] gi|325204222|gb|ADY99675.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 512 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|254671966|emb|CBA04388.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha275] Length = 512 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/247 (19%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|238026979|ref|YP_002911210.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1] gi|237876173|gb|ACR28506.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1] Length = 647 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/362 (17%), Positives = 148/362 (40%), Gaps = 29/362 (8%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V SV +K+ + F ++++Q++ Q +G +++ + +++LD ++ L Sbjct: 39 SANVASVDGRKITRAEFDSAYRQQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRAL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + +P+ D + + LA +G+ +Y + Sbjct: 99 ADEVRRLHLTASDAAVREALLSNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIR 158 Query: 157 KMLSRTDVVGMFV-GGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 L++ + + P ++ L D A+ + R + +VL A P++A Sbjct: 159 YQLTQQQLPSNLIDSAFTPKSVARSLTDLAQ----QQREIQALVLKPADYAAKVQPTDAQ 214 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFS-PEIR 270 ++ +++ +K + PE I Y++F + +++ Y+ N +Y + ++R Sbjct: 215 ISAYYDAHKQAFATPETATIQYLVFTPATAAASATPPTEADIRKYYDDNTARYRTEAQVR 274 Query: 271 TVEQLVFPNQKEADEAFQSLKKGK------------KFIQLAEEQGKSLSDIS----LGS 314 + + + + + +F Q+AE+ + + LG Sbjct: 275 VSHIFIAAARGASAADKAAARAKADRLLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGY 334 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 ++ + D K G+ + V+ G+ I +++KP+ F EVK+ IA + Sbjct: 335 ITRGSTAGGAAFDDAAFALKPGEISKVVESDLGFHILKATDVKPAIVKPFDEVKESIAAE 394 Query: 375 MR 376 ++ Sbjct: 395 LK 396 >gi|294788519|ref|ZP_06753761.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri ATCC 29453] gi|294483396|gb|EFG31081.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri ATCC 29453] Length = 609 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 79/392 (20%), Positives = 167/392 (42%), Gaps = 45/392 (11%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 A++ L ++ + F+ +G S F S + +V +G Q I ++ + Sbjct: 15 TAQVLLALIGISFIGFGASQFSFG-SNNQYIVKIGDQ------IITRYQLD--------- 58 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N+ RA + + L++ A L + + +GL + I + FH + KF Sbjct: 59 ---NAVRANQGATREAVFRQLMNRAYLTEGAKQLGLSISETELKQSIVNNKNFHDANGKF 115 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD-QAKRFY---FE 188 S ++F LA G++E+++++ + L + +G +G SN++ D Q +F Sbjct: 116 STELFKQILASNGLSEQQFLESERETL-LLESIGKILG----SNVVADSQVAQFLNSTMA 170 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 R + + +N + + +A L ++++ + +Y P+ + ++ F +K + Sbjct: 171 MRKIRNVGVNPQAFESKVKIDDASLKKFYDANQKSYTLPQAVQFEFVRFSPQTLAEKETV 230 Query: 249 SNDEL-QAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLKKGK-----KFIQL 299 S++E+ QA+ + S R + ++ P N+ +A E Q + K KF +L Sbjct: 231 SDEEVKQAQQDVQNS---STNKREIAHILIPFGSNKDKAKEEAQKIAKEAQANPDKFAEL 287 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA----KKGDFTPVIHGSFGYVIAHVSN 355 A++ + E+ +L + F A + G + V+ +FGY I N Sbjct: 288 AKKYSQDSDSKDKSGIIGEFSAQGNLVNDAFKKAAFGVESGGVSDVVESNFGYHIIRAKN 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + + T S +D A + + K++E+ Sbjct: 348 LGNA-TASDDTAARDAAKLKKAQQTYTKLREE 378 >gi|32266279|ref|NP_860311.1| hypothetical protein HH0780 [Helicobacter hepaticus ATCC 51449] gi|32262329|gb|AAP77377.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 499 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 138/332 (41%), Gaps = 28/332 (8%) Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 ++G +++ +A+ +GL + L +V A L F D+GL V EI + ++ K+ Sbjct: 68 QLGGMLDEAQAKQLGLPQIALQRVVQQAQLLNFAYDLGLSVSDEEVSNEIINAKVYVDKE 127 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 FSH+++ L ++ E+ + K L + + + S+L + E Sbjct: 128 GHFSHEIYKQALKERQMSPSEFEEIIRKSLLIQKIFSVMNLNVSQSSLQIPMVSVTPLEI 187 Query: 190 RSV-------DYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 ++ D +++ + V +A ++ L ++EK DN++ P I YI + Sbjct: 188 AALEMADSVRDRLMVKSIPVTQVAFSSTDDELKAFWEKNADNWKTPMEFHIEYIFVPFNA 247 Query: 242 KEKKIEISN---DELQAEYEKNKEKYFSPE------IRTVEQLVFPNQKEADEAFQSLKK 292 + E N ++ +++Y N S E IR V++L Q A ++ LK Sbjct: 248 QSPSEEALNKHYEDFKSDYLDNDGHLMSMEQSREKLIRDVQKL--EAQSLAKREYRDLKN 305 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G K QGK L+ F + D+ +AD +A+ G I G+V Sbjct: 306 GSK-------QGKILTLKDNERFFIKNGVDLVVAD--MKVAQVGQVLKPIEADEGFVTLK 356 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + + K S SF E K + TK E + Sbjct: 357 LLDKKESVNKSFDEAKSAVKEMYEHTKRKESL 388 >gi|34557645|ref|NP_907460.1| cell binding factor 2 precursor major antigen PEB4A [Wolinella succinogenes DSM 1740] gi|34483362|emb|CAE10360.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Wolinella succinogenes] Length = 271 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 19/159 (11%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKGKKFIQLAEE 302 +S +++ Y++NKEK+ PE+ + ++ N+KEA E + K +KF +LA Sbjct: 112 VSEGDMRKFYDENKEKFVQPELVKAKHILVQNEKEAKEVIAEIGKAGAKASEKFSELA-- 169 Query: 303 QGKSLSDIS-----LGSFSK-EYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVS 354 + KS+ LG FSK + +P+ A++ F+L +KG + TPV FGY + + Sbjct: 170 KSKSIDPAGQNGGELGWFSKDQMVPE--FANAAFAL-QKGSYSKTPV-KTQFGYHVIYAE 225 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + K + +++VK I ++I K + V K+L E Sbjct: 226 DKKAQAVLPYEDVKPQIEQNLKIQKFRDSVSSTAKKLRE 264 >gi|322417708|ref|YP_004196931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320124095|gb|ADW11655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 308 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 11/147 (7%) Query: 244 KKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KKIE +S+ ELQ Y KNK+K+ S ++ ++ EA E + LK G F +L Sbjct: 121 KKIEDSGVVSDAELQDYYNKNKDKFKSDAQIRASHILVKSEAEAQEIQKQLKAGASFEEL 180 Query: 300 AEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ G + LG FSK IP+ +S+ K+G+ + ++ FGY I + Sbjct: 181 AKKHSMDGAAQKGGDLGWFSKGSMIPEF---ESVAFGLKEGETSGIVKTQFGYHIIKQTG 237 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE 382 +P+ SF+EVK I + TK E Sbjct: 238 KRPAGVRSFEEVKDQIKAALLPTKQQE 264 >gi|302343059|ref|YP_003807588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] gi|301639672|gb|ADK84994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] Length = 317 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 +I + E+ A Y+++K+++ PE LV P++K ADE + +G+ + A+E G Sbjct: 150 RISVDQSEIVAYYDEHKDQFSRPEQILALHLVLPDKKMADELVARMDRGQDMLAAAKEMG 209 Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 +L SD + ++P L ++F+ A+ G H +GY + V +P+ + Sbjct: 210 VALGSDGRPDWLGRGHMPG-KLEKAVFA-ARPGRPAGPFHSDYGYHVVWVIEKRPAMVLP 267 Query: 364 FQEVKKDIANQMRITKASEKVKED 387 E RI A K K+D Sbjct: 268 LAEAAG------RIQDALAKEKKD 285 >gi|188578367|ref|YP_001915296.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522819|gb|ACD60764.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 675 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 86/417 (20%), Positives = 157/417 (37%), Gaps = 58/417 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 20 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 79 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157 ED G+ V IA F D KFS D + + LA +G + ++ Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALA-QGTPPRTPAQFDALVRD 196 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQ 215 L ++ + + ++ + E R V+ +L PA+ A S+A + Q Sbjct: 197 SLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPP---PAMDTALVSDAQIKQ 253 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W++ + ++R PE I Y+ + L+ YE+ K ++ P+ R + Sbjct: 254 WYDGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHI 313 Query: 276 VFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + +A F +L K +++ G L + G+ Sbjct: 314 LISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTM 373 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 K + D++FS+ K GD I FGY + + +K SF++V+ +A Sbjct: 374 VKPF------EDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLA 423 >gi|241668327|ref|ZP_04755905.1| hypothetical protein FphipA2_06151 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876860|ref|ZP_05249570.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842881|gb|EET21295.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 477 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 27/223 (12%) Query: 97 ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 A LDQ I + AD R + I +P+F KD KFS D + Sbjct: 72 AVLDQMINQYLILADAQRHNIVVSKLALQSAIFTNPMFFDKDGKFSADKLKQVV------ 125 Query: 148 EKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNR 200 EYI + ++LS+ M + + + D K+ Y N+ ++Y+ L+ Sbjct: 126 --EYIGGMNRLEQILSQNIQATMIPKTIADTVITTDYEKKQLASIYLVNKKIEYLKLSPV 183 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + P+ L ++ +K++Y P K ISY + + K I+NDELQ YE + Sbjct: 184 DFQSQVKPNQQDLESYYNAHKNDYINPAQKNISYFIISKEDFMSKNNINNDELQEYYETH 243 Query: 261 KE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 +E K F + Q + N++ A E F + + ++ AE Sbjct: 244 RELFKDFDNNTKASIQKIIQNRR-ALEQFNNYSQNIDSVKFAE 285 >gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740] gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes] Length = 485 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 97/409 (23%), Positives = 174/409 (42%), Gaps = 39/409 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K R V I++ V+ FV F+ WG A S SS V VG K+ + Sbjct: 1 MINWMQKHKRYLVITIWISVIAFVGAGFVGWG---AYSFSSSSSWVAKVGETKITQTELE 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + ++ +G ++ E+A+++G++K+ LD+L+S + F +D+GL V Sbjct: 58 QEYARLYEFYNKIVGGSLDKEQAKALGIEKQALDSLISKTLMLNFAKDVGLRVSDEEVAK 117 Query: 118 EIARSPLFH--GK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + + FH GK D+K V + E+ H + +L + V+ + P Sbjct: 118 AVVKMEAFHVEGKFDDKTYRKVLEENHYKPAAFERAL--HDSLLLEKLGVI------LTP 169 Query: 175 SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 S L++ FY +++ + + P ++D V + W E +D Y Sbjct: 170 SVTELEKESLGAAFYIQDKLSIKTLSSTSLKPVVSDEE--VKSFWGEN-QDVYMTDRVYD 226 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y L K +I S++EL+ Y+ K Y + R +E + + E D + Sbjct: 227 IIYSL----SKNDEISASDEELKIHYDSFKNNYLGLDGRPLEFELARTRVEKDYKDAQAE 282 Query: 292 KG--KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI---FSLAKKGDFTPVIHGSF 346 K K +I+ + + SL D +L D + S AK G+ + Sbjct: 283 KNALKTYIEFKKSPTPEGTRYSLAE------SDETLGDELLYRLSEAKVGETLKPVPSPE 336 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEF 394 GY+ + IK S + F+ K+ N + K + ++E K+ LE F Sbjct: 337 GYLTIKLMGIKESEPMKFEAAKELARNDLLAQKKRDLLEEMAKKELESF 385 >gi|240949547|ref|ZP_04753887.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305] gi|240296120|gb|EER46781.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305] Length = 624 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 107/531 (20%), Positives = 219/531 (41%), Gaps = 58/531 (10%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI-SQKIG- 72 KI ++ + F++ G+ L + S+ V V + + +F ++ ++ ++ SQK G Sbjct: 15 KIIFTLVSLSFVLGGIGSGLVATDDSA--VKVNGEGISQRTFTDAKNRQQNILYSQKGGE 72 Query: 73 ---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + E AR ++ +L++L++ L Q+ + + L+ ++ EI F ++ Sbjct: 73 AWDLLDKPEYARE--FNQSVLNSLINDELLRQYAKSLKLDVGVDQIKSEIVHDANFQ-QN 129 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRF 185 KF + ++ L G+ D Y ++ + G+ ++ L + + Sbjct: 130 GKFDNKLYQQTLRNAGLT----TDGYAAIVREGMIFSQIEEGIINTSFDLPAQQEALAKL 185 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 F+ R V + S L ++E +K PE + Y++ + EK+ Sbjct: 186 LFQKRDVRLATYSLADEAKNQTVSPEELQSFYEAHKKQLLTPETFTVEYLVLTPKDVEKR 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 I+I+++++ Y+KNK ++ + + + N+ EA+ Q L G F LA+E Sbjct: 246 IQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFATLAKEKST 305 Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 QG +L G+F + + ++ S + G + I Y I V + Sbjct: 306 DKLSAAQGGNLGWTKAGTFPQAF-------ENAASQLQVGQVSQPIKIDNAYHIIKVIDR 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K + +VK I +R E + +Y + +A ++ + E + + Sbjct: 359 KAENIIPLAQVKDKITETIR----KELLASEYSTVARDMA-NSAFENSGSLEAVAKV--- 410 Query: 417 LVDFAGKDVKGKEV---AAIPYK---EQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 AG ++ A +P + E + +F D + ++ AL G M+ Sbjct: 411 ----AGLEIHKTSAFTQANVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 V++ + R++ LEE TDV+ K K + + S A ++ + EGKN Sbjct: 467 VRVSDFQAEREKTLEEAKTDVEAMVKREKAEKALLSNAEANLVALN-EGKN 516 >gi|225023875|ref|ZP_03713067.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC 23834] gi|224943349|gb|EEG24558.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC 23834] Length = 513 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 2/170 (1%) Query: 89 ILDNLVSGATLDQFIEDIGL-EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 + +LV A DQ ++G+ E ++ G I R P F + +FS + F + L + GI Sbjct: 73 VYQSLVQQAYFDQGAAELGVGELSIEQIKGVITRDPSFQ-VNGQFSPEQFQAYLRQRGIT 131 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 E+ I+ R ++ + G S+ +Q R + N + Sbjct: 132 EERLIEEMRSQYRRQTLISLLSNGNIVSDSQANQILALTGSERELRTAPFNAADFASKVQ 191 Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 P++A L +FE K Y P ++ ++ +V E K+ +S ELQ Y Sbjct: 192 PTDAALRSYFEANKAKYALPLAVKLEFVDLNVEELAKQQTVSAQELQEAY 241 >gi|297564584|ref|YP_003683556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] gi|296849033|gb|ADH62048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] Length = 632 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 11/154 (7%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 V E +KK + +E++ ++ NK Y + + Q+V ++K AD+ + LK G F++ Sbjct: 156 VEEIQKKATPTPEEVKFYFDLNKANYKTEDRVKARQIVVDDKKLADDLYAQLKAGADFVE 215 Query: 299 LAEEQGKSLSDI--SLGS--------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 LA++ K +D +LG+ F I +AD++F L + G P+ G Y Sbjct: 216 LAKKNSKVAADQGGALGAETGKSEPGFVTRVIFPSEVADAVFKLKQGGLTAPIASGGR-Y 274 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 I V KP +F+EVK +A ++ K + Sbjct: 275 YIVKVEEFKPGGDPNFEEVKDRVAEDVKKIKGDQ 308 >gi|251772782|gb|EES53344.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum ferrodiazotrophum] Length = 307 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 12/136 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 EIS AEY + K Y +PE V +V ++ E +L G F LA + KS Sbjct: 140 EISRKAALAEYNRRKGHYETPERALVRDIVVRSEDEGKAILTALAAGNSFSALA--RAKS 197 Query: 307 LS-DISLGSFSKEYIPDVSLAD--SIFSLA---KKGDFTPVIHGSFGYVIAHVSNIKPSF 360 LS + + G +P +L + ++F+LA K G+ +P++ +GY I + I PS Sbjct: 198 LSPEGAKGGL----LPPYALGEMPALFALAFSMKPGEVSPLLSSPYGYHILKLVKILPSA 253 Query: 361 TVSFQEVKKDIANQMR 376 + F++V+ I +R Sbjct: 254 DLPFRKVRDRIERHLR 269 >gi|134295955|ref|YP_001119690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] gi|134139112|gb|ABO54855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] Length = 646 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 70/361 (19%), Positives = 141/361 (39%), Gaps = 34/361 (9%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V +V K+ F +++Q++ Q +G + + + K++LD L+ L Sbjct: 39 SANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVL 98 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + + L A V + P+ D + L+ +G+ ++Y + Sbjct: 99 ADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVQRYAQLLSFQGMTPEQYQERVR 158 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L+ + V + + R V +VL + A P++A LT + Sbjct: 159 YSLALQQIPASIVSSAFTPKGPAQRLSELAAQQREVQALVLKSSDFAAKVQPTDAQLTAY 218 Query: 217 FEKYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFS-PEIR--- 270 ++ +K ++ PE I Y+++ + ++ +++ Y+ N + S ++R Sbjct: 219 YDAHKQSFATPETATIQYLVYSPAAAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRISH 278 Query: 271 -------------------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 EQL+ + D+ Q +K + A + G L I+ Sbjct: 279 IFIAAASNASAADKAAAKAKAEQLLADVKAHPDQFAQIAQKSSQDAPSAAK-GGDLGFIT 337 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 GS + D D+ F+L K+G+ + V+ G+ I + +KPS F +VK I Sbjct: 338 RGSTAGGKAFD----DAAFAL-KQGEVSGVVESDLGFHILKATEVKPSVVKPFADVKDQI 392 Query: 372 A 372 A Sbjct: 393 A 393 >gi|261392500|emb|CAX50051.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase D) [Neisseria meningitidis 8013] Length = 512 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/246 (20%), Positives = 109/246 (44%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ M +++ G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA------MQNEQAGG 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S A + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 64 GSPSRDA--------VFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|222839633|gb|EEE77956.1| predicted protein [Populus trichocarpa] Length = 390 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSL 290 E I +S D++++ Y +N E+ PE R ++ K+A DE L Sbjct: 2 EAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKADELLAEL 61 Query: 291 KK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K K+F +LA ++ G + S LG F + + D+ F + K GD + V+H Sbjct: 62 RKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVK-PFEDAAFGM-KVGDISDVVHSD 119 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FGY I + +IK SF++++ + +++ +A K E Sbjct: 120 FGYHIISLEDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAE 160 >gi|309378619|emb|CBX22797.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 512 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/247 (19%), Positives = 106/247 (42%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ Q + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVRVGDEKIS---------------EQSLNA 54 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V +E+A + + +L+ A L Q + +G+ ++ I P FH KF Sbjct: 55 AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ YE+ Sbjct: 235 VKNAYEE 241 >gi|315637398|ref|ZP_07892611.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] gi|315478290|gb|EFU69010.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] Length = 485 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/415 (19%), Positives = 174/415 (41%), Gaps = 42/415 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V F+ WG D + G V +G ++V + + S+ Sbjct: 17 WISTIAFVG--AGFVGWGSYD--YGKQGG-VVAKIGDREVTVEEYQQEYSNLYSQYSRMF 71 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + N++ A +GL + ++ + + +GL+ + E+ + F KD K Sbjct: 72 GDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIARELLKYEAFF-KDGK 130 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F D ++ L + + K + + + L V +F + P++ ++ + F Sbjct: 131 FDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLF--EVNPTSWEVENISKLLFLEDD 188 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + +L++ V D L +++E K++Y +S + +D+ KE SN Sbjct: 189 ITIKILSSNDVKVTVDEEG--LKKYWEDNKNSY-------MSEVTYDLEIKEIPFINSNS 239 Query: 252 ---ELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 E++ +YEK K K+ +I+++E+ + + D+ F + K +++L +++ K Sbjct: 240 TEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKIYLKLKKDEEKF 299 Query: 307 LSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +++ +S+E I + K G+ + Y+I V + PS + Sbjct: 300 DKTLNILESKLPYSQENIAKIKEV-------KNGEVVKPFMENGKYIIVKVVKLNPSKVL 352 Query: 363 SFQEVK----KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 F++ K +D +R K E+ K + K + GT + ++R KI + Sbjct: 353 DFEQAKIKATQDYEKVLRAQKLQEQAKAELKDFK-----GTDIAGVTRTSKIAGL 402 >gi|157737622|ref|YP_001490305.1| hypothetical protein Abu_1381 [Arcobacter butzleri RM4018] gi|157699476|gb|ABV67636.1| conserved hypothetical membrane protein [Arcobacter butzleri RM4018] Length = 485 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/415 (19%), Positives = 174/415 (41%), Gaps = 42/415 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W++ I V F+ WG D + G V +G ++V + + S+ Sbjct: 17 WISTIAFVG--AGFVGWGSYD--YGKQGG-VVAKIGDREVTVEEYQQEYSNLYSQYSRMF 71 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + N++ A +GL + ++ + + +GL+ + E+ + F KD K Sbjct: 72 GDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIARELLKYEAFF-KDGK 130 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F D ++ L + + K + + + L V +F + P++ ++ + F Sbjct: 131 FDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLF--EVNPTSWEVENISKLLFLEDD 188 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + +L++ V D L +++E K++Y +S + +D+ KE SN Sbjct: 189 ITIKILSSNDVKVTVDEEG--LKKYWEDNKNSY-------MSEVTYDLEIKEIPFINSNS 239 Query: 252 ---ELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 E++ +YEK K K+ +I+++E+ + + D+ F + K +++L +++ K Sbjct: 240 TEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKIYLKLKKDEEKF 299 Query: 307 LSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +++ +S+E I + K G+ + Y+I V + PS + Sbjct: 300 DKTLNILESKLPYSQENIAKIKEV-------KNGEVVKPFMENGKYIIVKVVKLNPSKVL 352 Query: 363 SFQEVK----KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 F++ K +D +R K E+ K + K + GT + ++R KI + Sbjct: 353 DFEQAKAKATQDYEKVLRAQKLQEQAKAELKDFK-----GTDIAGVTRTSKIAGL 402 >gi|325130315|gb|EGC53082.1| hypothetical protein NMBOX9930304_0938 [Neisseria meningitidis OX99.30304] Length = 512 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/246 (19%), Positives = 108/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 SPSRD---------AVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|154175136|ref|YP_001408066.1| trimethylamine-n-oxide reductase 1 [Campylobacter curvus 525.92] gi|112802868|gb|EAU00212.1| trimethylamiNe-n-oxide reductase 1 (tmaoreductase 1) (trimethylamine oxidase 1) [Campylobacter curvus 525.92] Length = 272 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 I+ S+DEL+ Y KNK+ P ++ ++K A+ LK KG KKF +L Sbjct: 109 IKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEKTANAIIAQLKNLKGDALAKKFAEL 168 Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ ++G + LG F + + AD++FS++K T + FGY I + Sbjct: 169 AQADSIDKGSAAHGGELGWFGQSQMVK-PFADAVFSMSKGSVSTKPVKSQFGYHIILKED 227 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 KP+ VSF++ K I +++ K +++ Sbjct: 228 SKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQ 258 >gi|304405097|ref|ZP_07386757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304345976|gb|EFM11810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 365 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 6/142 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ- 303 K +++ ++Q Y++NKE + +PE ++ ++EAD + LK G F +A+E+ Sbjct: 178 KATVTDKDIQDYYDQNKESFSTPEQVRASHILVKTKEEADAILKQLKDGADFATIAKEKS 237 Query: 304 ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 G + L F K + D + + F L K G+ + + ++G+ I V++ K + Sbjct: 238 LDTGTKDAGGDLNYFGKGQM-DPAFEKAAFEL-KVGETSQPVQSAYGFHIIKVTDHKQAA 295 Query: 361 TVSFQEVKKDIANQMRITKASE 382 + +F+E K+DI N + ++K +E Sbjct: 296 SPTFEEKKEDIKNILMMSKINE 317 >gi|240851485|ref|ZP_04752236.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202] gi|240310003|gb|EER48295.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202] Length = 624 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 108/531 (20%), Positives = 217/531 (40%), Gaps = 58/531 (10%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI-SQKIG- 72 KI ++ + F++ G+ L V+ + V V + + +F ++ ++ ++ SQK G Sbjct: 15 KIVFTLVSLSFVLGGIGSGL--VATDDSAVKVNGEGISQRTFTDAKNRQQNILYSQKGGE 72 Query: 73 ---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + E AR ++ +L++L++ L Q+ + + L+ ++ EI F ++ Sbjct: 73 AWDLLDKPEYARE--FNQSVLNSLINDELLRQYAKSLKLDVGVDQIKSEIVHDANFQ-QN 129 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRF 185 KF ++++ L G+ D Y ++ + G+ ++ L + + Sbjct: 130 GKFDNNLYQQALRNAGLTP----DGYAAVVREGMIFSQIEEGIINTSFDLPAQQEALAKL 185 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 F+ R V + S L +++ +K PE + Y++ + EK+ Sbjct: 186 LFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEYLVLTPKDVEKR 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 I+I+++++ Y+KNK ++ + + + N+ EA+ Q L G F LA+E Sbjct: 246 IQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFAALAKEKST 305 Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 QG +L G+F + + ++ + + G + I Y I V + Sbjct: 306 DKLSAAQGGNLGWAKAGTFPQAF-------ENAANQLQVGQVSQPIKIDNAYHIIKVIDR 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K + +VK I +R E + +Y + +A ++ + E + + Sbjct: 359 KAENVIPLAQVKDKITETIR----KELLASEYSTVARDMA-NSAFENSGSLEAVAKV--- 410 Query: 417 LVDFAGKDV------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 AG D+ V A E + +F D + ++ AL G M+ Sbjct: 411 ----AGLDIHKTSAFTQSNVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 V+I + R++ LEE TDV+ K K + + S A + L EGKN Sbjct: 467 VRISDFQAEREKTLEEAKTDVEAMVKREKAEKTLLSNA-EANLAALNEGKN 516 >gi|189423768|ref|YP_001950945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] gi|189420027|gb|ACD94425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] Length = 305 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 235 ILFDVHEKEKKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 I+ D + K KK+E IS+DEL+ YE+N +K+ + E ++ +++EA + L Sbjct: 113 IIVDTYLK-KKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILEQL 171 Query: 291 KKGKKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KKG F +LA+ + S LG F K +P + + F L K+G + ++ F Sbjct: 172 KKGANFEELAKTKSADSSAAKGGDLGWFGKGNMVP--AFEKAAFGL-KEGQLSGIVKSDF 228 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390 GY I ++ + + T EVK+ I + K + K+KED K+ Sbjct: 229 GYHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDLKK 275 >gi|170759119|ref|YP_001785376.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406108|gb|ACA54519.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 247 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316 NKE++ + E+ T ++ ++KEA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEKEANNIYEEIKDGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + +P+ A A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222 Query: 376 RITKASEKVKE 386 K +E+ E Sbjct: 223 LQEKQNEQYNE 233 >gi|325920988|ref|ZP_08182874.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC 19865] gi|325548522|gb|EGD19490.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC 19865] Length = 656 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/420 (19%), Positives = 156/420 (37%), Gaps = 60/420 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + W+A L +L +PFL + + ++ G++ V V + S + W Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFL-FVIDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKK-----------------ILDNLVSGATLD 100 L +I F E+AR ++ +LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGDNFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK---EYIDHYTK 157 ED G+ V I F D KFS D + + LA +G + ++ Sbjct: 120 LGAEDAGIVIGDATVRDYITGIQAFQ-VDGKFSPDQYRAALA-QGTPPRTPAQFDALVRD 177 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLT 214 L ++ + + ++ + E R V+ +L P AD S+A + Sbjct: 178 SLQQSVIPQAIAESGFATKAEFERLLKLMGETRDVELAMLP----PPAADTAPVSDAQIK 233 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 QW++ + ++R PE I Y+ + + + L+ YE+ K ++ P+ R Sbjct: 234 QWYDGHAQDFRQPETVTIEYVEINAAKLQPATAADEATLRKRYEEEKGRFVEPDQRLTSH 293 Query: 275 LVFPNQKEADEA--------------------FQSLKKGKKFIQLAEEQGKSLSDISLGS 314 ++ + F +L K ++ G L + G+ Sbjct: 294 ILISAGSDPAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKGAGGDLGWVEKGT 353 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 K + D++F++ K GD I FGY + + +K SF++V+ +A + Sbjct: 354 MVKPF------EDALFAM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAE 406 >gi|315648234|ref|ZP_07901335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] gi|315276880|gb|EFU40223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] Length = 399 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/164 (23%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 KI+++++E++ Y++NKE + +PE ++ ++EADE + LK G F +A+E+ Sbjct: 223 KIKVTDEEIKTIYDQNKESFATPEQVRASHILVETKEEADEIVKQLKDGADFAAIAKEKN 282 Query: 305 KSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + + + G F + + D + ++ F L KK + + + SFGY I +++ K + Sbjct: 283 QDATKDTGGDLDFFGRGEM-DPAFEEAAFKL-KKDEISDPVKSSFGYHIIKLTDRKEATN 340 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + ++ K +I Q+ K ++ + L++ + +++E++ Sbjct: 341 PTLEDKKVEIRKQLENQKVYQESSAYIQELKDKATITNTLEEVA 384 >gi|171058611|ref|YP_001790960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170776056|gb|ACB34195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 637 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/415 (17%), Positives = 172/415 (41%), Gaps = 44/415 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFIN 58 M + +R+ +R + + L ++ VP FL+ G+ FS S + V ++ + + + + Sbjct: 1 MFDFVRRHNR--LLQFGLALVIVPSFLVVGIQGYDQFSAS-NEAVANIDGRAITQTEWDA 57 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + +Q++ + ++ V +++ S + +K+LD+LV + + + L R+ Sbjct: 58 AHRQQVERVRAQMPGV-DAKLLDSPAIKQKVLDDLVRERVMLVAAQKLLLAPTDQRLQRL 116 Query: 119 IARSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 A P F D D+ +R G+ +++ + + V G S Sbjct: 117 FATDPQFASLRNADGSVRKDLLEAR----GMTSEQFAQQLRQEFALRQVSLGLAGSALAS 172 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRIS 233 + +A +F+ R V + + + S+A +++ ++ +++PE + Sbjct: 173 PAVTARAMDSFFQQREVQVALFPAKDYLSKVSASDAEQQAYYDDPRNAAQFQSPETVSVE 232 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------------ 275 Y++ D+ I ++ D+L+ Y++N +Y P+ R + Sbjct: 233 YVVLDLPAVTAGINVNEDDLRKYYDENAARYEQPQERRARHILVKLDADASDDAKAKARE 292 Query: 276 ----VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 + ++ AF L + + + QG L I+ G+ K + D++F Sbjct: 293 KAAALLAEVQKNRAAFADLARRQSDDPGSAAQGGDLDWIARGAMVKPF------EDAVFG 346 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 L KKG+ ++ FG + V++ + +F V+ ++ ++R A ++ E Sbjct: 347 L-KKGELGGIVETEFGLHVIEVTDTRGGEKRAFANVRGELEAEVRKQLAQKRYAE 400 >gi|301059212|ref|ZP_07200150.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] gi|300446702|gb|EFK10529.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] Length = 343 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGKSLSD 309 E++A +E N Y +PE Q+ +K+A+E + ++ G+ LA + +G D Sbjct: 184 EMKARFESNPNHYKAPEEIRFRQIFCRTKKKANELYGKIRSGESLASLARKYSEGPEAVD 243 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 + + I D SL +F +A GD +PV G+ GY I V + +P +F E+ Sbjct: 244 GGEVGWVAKGILDESLDKMLFQMA-PGDISPVTKGASGYHIFEVMDRRPGGFRAFSEIID 302 Query: 370 DIANQMRITKASEKVKE 386 I + T+ +KE Sbjct: 303 GIEEDLCQTRRMSFIKE 319 >gi|237803592|ref|ZP_04591177.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025574|gb|EGI05630.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str. 1_6] Length = 627 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 91/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARSVG---LDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ ++ + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPALLDEKLLRESALKGLIDRKLLLQGASDAKFTFTD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + +I ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQILQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q + F E ++ D+ L +PA D S +T ++++ + Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDQHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 +PE + YI K+++ +++LQA Y+K S + R L+ N K DE Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285 Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 Q L KG+ F LA+E G S LG ++ + + D + +++++L Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLG-YAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K + ++++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKGKLTDELKSQLVEQKFVEVTKQLED 403 >gi|121634931|ref|YP_975176.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis FAM18] gi|120866637|emb|CAM10388.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis FAM18] gi|325132578|gb|EGC55271.1| hypothetical protein NMBM6190_0987 [Neisseria meningitidis M6190] gi|325138351|gb|EGC60920.1| hypothetical protein NMBES14902_1084 [Neisseria meningitidis ES14902] gi|325142491|gb|EGC64895.1| hypothetical protein NMB9615945_0995 [Neisseria meningitidis 961-5945] gi|325198371|gb|ADY93827.1| conserved hypothetical protein [Neisseria meningitidis G2136] Length = 512 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/246 (19%), Positives = 108/246 (43%), Gaps = 16/246 (6%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 SPSRD---------AVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEK 259 + +E+ Sbjct: 236 KNAFEE 241 >gi|222823915|ref|YP_002575489.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari RM2100] gi|222539137|gb|ACM64238.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari RM2100] Length = 271 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 36/237 (15%) Query: 159 LSRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215 +S T+V F +R + + L + K+ + V +VL + I DPS Sbjct: 30 ISDTEVNEFFAPMLRGAKITDLPAEQKKAIIDQYIVQQLVLKDAKAQKIENDPS------ 83 Query: 216 WFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAE--YEKNKEKYFSPEIRTV 272 YK+ RA E IL ++++K+ I ND+ +A+ YE NK+K+ P Sbjct: 84 ----YKEELERAKEA-----ILVNIYQKKIFDSIKNDDAKAKKFYEANKDKFTKPAQVKA 134 Query: 273 EQLVFPNQKEADEAFQSLKK--GK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPD 322 + ++ ++KEA + L K GK KF QLA+E+ G S LG F++ + Sbjct: 135 KHILVTSEKEAKDIIAELSKLSGKALNDKFAQLAKEKSIDKGSSAQGGDLGWFAESTMVK 194 Query: 323 VSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 AD+ FS+ KKG TPV FGY I + + T+S+ EVK I + +++ Sbjct: 195 -PFADAAFSM-KKGTISKTPV-KSDFGYHIILKEDARAKSTMSYNEVKAGIESNIKM 248 >gi|325144618|gb|EGC66917.1| hypothetical protein NMBM01240013_1034 [Neisseria meningitidis M01-240013] gi|325205986|gb|ADZ01439.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] Length = 512 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/247 (19%), Positives = 107/247 (43%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ Q + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKIS---------------EQSLNA 54 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V +E+A + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 55 AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|161870081|ref|YP_001599251.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442] gi|161595634|gb|ABX73294.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442] Length = 512 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/247 (19%), Positives = 107/247 (43%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ Q + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKIS---------------EQSLNA 54 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V +E+A + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 55 AVQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|213968838|ref|ZP_03396979.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. tomato T1] gi|301384116|ref|ZP_07232534.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tomato Max13] gi|302059522|ref|ZP_07251063.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tomato K40] gi|302135027|ref|ZP_07261017.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926441|gb|EEB59995.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. tomato T1] Length = 627 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 92/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ + + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q F E ++ D+ L +PA DPS +T ++++ + Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLT---LPA--DPSAVKVTDDEVKAHYDQHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---- 281 +PE + YI K+ + +++LQA Y+K S + R L+ N K Sbjct: 227 SPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDD 285 Query: 282 ----EADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + +E Q L KG+ F LA+E G S LG F+ + + D + +++++L Sbjct: 286 QAKAKVEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403 >gi|28870877|ref|NP_793496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. tomato str. DC3000] gi|28854126|gb|AAO57191.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|331019234|gb|EGH99290.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 627 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 92/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIT----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ + + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q F E ++ D+ L +PA DPS +T ++++ + Sbjct: 172 AGSAFVTDAQVDAFARLEKQTRDFASLT---LPA--DPSAVKVTDDEVKAHYDQHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---- 281 +PE + YI K+ + +++LQA Y+K S + R L+ N K Sbjct: 227 SPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDD 285 Query: 282 ----EADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + +E Q L KG+ F LA+E G S LG F+ + + D + +++++L Sbjct: 286 QAKAKVEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLG-FAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLED 403 >gi|313681990|ref|YP_004059728.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994] gi|313154850|gb|ADR33528.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994] Length = 488 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 96/430 (22%), Positives = 170/430 (39%), Gaps = 60/430 (13%) Query: 12 WVAKI-FLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 W++ I F+ FV + + D +V+ G ++ S QK +S+ N + Q + Sbjct: 17 WISTIAFIGAGFVGWGQYNYGDKAGAVAKVGDISITSAELQK-SYSNLFNQYNQ---LFQ 72 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 K + ++A+ GL ++ L LV+ A + GL +W I F K Sbjct: 73 GKF----DEKQAQQFGLQRQALRQLVNQALVLNLANSYGLTVTDQELWDVIKSQSAFS-K 127 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP--SNLLLDQ---AK 183 D F + L + + KEY + K L + + G++P N L D + Sbjct: 128 DGTFDKSTYAEVLKQNRLTIKEYEESMKKELLIQKTLYLLSSGVKPIEENTLADALGVSD 187 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + ++ + D I L P++A L ++EK +++ ISY V + Sbjct: 188 KISYKILTPDMISLA---------PTDAELKAFWEKRSGDFKTTPSYEISY----VTQTP 234 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVE-QLVFP----------NQKEADEAFQSLKK 292 S E+ Y+ N++ + E + + Q P +KEA + KK Sbjct: 235 ITAAPSQKEISDYYDINRQMLKNGEGKVLSLQEAQPIIVAALNEKATEKEALRLYIDYKK 294 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G ++ + + S+ F+ E L I L+ + F S GYVI Sbjct: 295 GS--LKPGMKPQTATVTKSVSPFAPE------LTKEITELSTEKAFLKPRKVSNGYVIVK 346 Query: 353 VSNIKPSFTVSFQEVKKDIA----NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + P+ +++E K D+ N + TK E + YK GT+ D ++R+E Sbjct: 347 LDKMDPARPKTYEEAKTDVMALYLNDTKKTKLQELAQNSYKTFS-----GTTTDYLTRKE 401 Query: 409 --KIVSIDLP 416 KI + P Sbjct: 402 SAKIAGLSEP 411 >gi|319787632|ref|YP_004147107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas suwonensis 11-1] gi|317466144|gb|ADV27876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas suwonensis 11-1] Length = 654 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 135/683 (19%), Positives = 253/683 (37%), Gaps = 89/683 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R S W A I + +L +PFL + + + G++ V V Sbjct: 1 MLQKLRDRSSGWAATIIIALLMIPFL-FVVDQSYLGGMGANNVAQVKAPPSWWKGAPGFW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++V F +Q + Q+ G + + ++ILD LV + Sbjct: 60 PVSLLWEHEEVSVEDFRQRLEQARMLARQQQGEAFDPREFEGIENKRRILDELVDEKVML 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE--GINEKEYIDHYTKM 158 G+ V IA P F D KF + + L+ + +++ D Sbjct: 120 LASARDGVVVSDAAVREYIASIPAFQ-VDGKFDQNAYQMALSSQFPPRTPRQFEDLVRTT 178 Query: 159 LSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL---- 213 L R +V + VG ++ LD+ R E R V+ ++ P IA+ + V Sbjct: 179 L-RQSLVPVGVGSSAFVTDAELDRLLRLSGETRDVELALM-----PEIAEDTTPVTDADA 232 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 W+E + ++ +PE I Y+ + + L+ YE K+++ PE R Sbjct: 233 KAWYEAHTADFMSPEKVAIEYVEVTALQVPEPAAADEATLRERYEAEKQRFGDPERRLAS 292 Query: 274 QLVFPNQKEADE----------AFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYI 320 ++ + D A Q+ G F LA E + G + ++ + Sbjct: 293 HILVRVPEGGDAAAAEAKAKQLAGQAAAPGADFAALAREHSEDPGSRDTGGDLGWVEQGM 352 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++F++ + G+ + + FG+ + + ++P F+EV++++A + Sbjct: 353 MVEPFEQALFAM-QAGETSGPVKTEFGWHVLQLREVQPGALKPFEEVREELAREQAQADR 411 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 E RL + S E + E + + L F+ D+ G +AA P ++ Sbjct: 412 ERAYSELLGRLTDLAYENPSSLEPAANELKLELRK-LGPFSRDDMVG--IAAAPEVKRAA 468 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE--- 497 F +D + D P + + +++ E PA R L +V +V+ + +T++ Sbjct: 469 FSEELVEDGTASDPIEIGPQHNVV-IRVVEHQPAAARALADVRAEVEAAVRADRTSKAAI 527 Query: 498 -------EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 E K + EG+ G GA T + NR Sbjct: 528 AAAEAALERLRKGEAMAAVVGSEGEVMPLPGLPRGAP-APTPEANRA------------- 573 Query: 551 QVFSGPV-EMVKC----FPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNK 600 +FS PV E K F + +G VF V G P +++ Q+ Sbjct: 574 -IFSAPVPEEGKATFGRFALPDG-RQAVFAVNAVHPGKPEELPQEQRAMLRQQFAQVDGA 631 Query: 601 DLLDSVIAYLKSQYSVTVHDNLI 623 + I ++SQ+ V V ++ + Sbjct: 632 TMAQDYIRRVRSQFKVQVDESQL 654 >gi|291276818|ref|YP_003516590.1| hypothetical protein HMU05900 [Helicobacter mustelae 12198] gi|290964012|emb|CBG39851.1| putative periplasmic protein [Helicobacter mustelae 12198] Length = 490 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 92/412 (22%), Positives = 164/412 (39%), Gaps = 75/412 (18%) Query: 1 MLEIIRKASRTWVAKIFLVVL---FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 MLE +++ + V I++ V+ F + W SD F+ + V VG+ K+ F Sbjct: 1 MLEWMQRHKKYLVVTIWVSVIALVFAGMVGWNPSDISFA---GNNVAKVGKIKISDQEFQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++++ +Q +G ++ ++A++ LD L L+ A L F D+GL + Sbjct: 58 YTFQRVFNEYNQMVGGDLDMDQAKNFQLDNITLQQLIQKAQLQNFALDLGLRVQDREIIE 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F +D F ++ L +N V F +R S L Sbjct: 118 VIEKNESFQ-RDGTFDKKLYREVLKNNNLN-----------------VKFFEQSVRDS-L 158 Query: 178 LLDQAKRFY------FENRSV----------DYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 L+ + F+ E RS+ +Y VL+ P + L ++EK K Sbjct: 159 LIQKLLEFFPASTTQLERRSIGGSIALTDTIEYEVLSTS--PIKQQITEQKLKDFWEKNK 216 Query: 222 DNYRAP-----EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-----EIRT 271 NY P E +IS K E N LQ Y +NK Y + Sbjct: 217 ANYTNPATVTLEIAKIS---------PSKQEFDNSSLQNFYNENKTLYLDSNGQLQDFSK 267 Query: 272 VEQLV---FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 VE+ V + +QK + A + K +K +L + + + L+ D L + + + D + Sbjct: 268 VEKKVQADYQDQKAKESALRLKPKFRKN-ELKDLKTQKLTIALDEKLSADTITQLKDARI 326 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D+I + +GD+ G VI F + ++ +KD+ Q+ + Sbjct: 327 GDTINPILYQGDYV------IGNVITKQEKNTKDFASAKEQARKDLQKQIML 372 >gi|261408078|ref|YP_003244319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] gi|261284541|gb|ACX66512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] Length = 390 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 77/138 (55%), Gaps = 5/138 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 KI+++++E++ Y++NKE + +PE ++ ++EA+ + LK+G F +A+E+ Sbjct: 214 KIKVTDEEVKEVYDQNKESFATPEQVRASHILVETKEEAEAIVKQLKEGADFATIAKEKN 273 Query: 305 KSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + + + G F + + D + ++ F L KK + + + SFGY I V++ K + Sbjct: 274 QDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTDRKEATN 331 Query: 362 VSFQEVKKDIANQMRITK 379 + ++ K++I +Q+ K Sbjct: 332 PTLEDKKEEIRSQLENQK 349 >gi|330952802|gb|EGH53062.1| periplasmic folding chaperone [Pseudomonas syringae Cit 7] Length = 627 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 91/420 (21%), Positives = 175/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ ++ + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q + F E ++ D+ L +PA D S +T ++++ + Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 +PE + YI K+++ +++LQA Y+K S + R L+ N K DE Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285 Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 Q L KG+ F LA+E G S LG ++ + + D + +++++L Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K + N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKSKLTNDLKSQLVEQKFVEVTKQLED 403 >gi|325134515|gb|EGC57160.1| hypothetical protein NMBM13399_0963 [Neisseria meningitidis M13399] Length = 512 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/247 (19%), Positives = 108/247 (43%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNA-------------- 55 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A G + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 56 -IQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + + + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNSVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|108803753|ref|YP_643690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter xylanophilus DSM 9941] gi|108764996|gb|ABG03878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter xylanophilus DSM 9941] Length = 354 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 249 SNDELQAEYEKNKEKYFS-PEIRTVEQLVF-PNQKE-ADEAFQSLKKGKKFIQLAEE--- 302 + +E++ YE+N+E F+ P R V ++F P+Q+E A+E + L++G F +LA E Sbjct: 187 TEEEVRDYYEENREAQFTTPAQRCVRHILFNPDQRERAEEVKRRLEEGADFAELAREYSQ 246 Query: 303 -QGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 G LG + E +P+ ++ F A++G+ + FGY + V +++ Sbjct: 247 DPGSREKGGDLGCIGRGETVPN--FEEAAFG-AEEGEVVGPVKTQFGYHVIKVYDVRRES 303 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 T EV+ I Q+ T +EK + +R EE Sbjct: 304 TEPLSEVEDRIREQLAATAQAEKFQRWVERQEEL 337 >gi|297374635|emb|CBL42922.1| PpiC-type peptidyl-prolyl cistrans isomerase [Candidatus Magnetobacterium bavaricum] Length = 323 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 42/243 (17%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 + +L +E I ++ + K+ ++ MF G D KR E + + + L Sbjct: 36 IVKLGQETITSEQLQEELAKLPP--NIKAMFTGK--------DGLKRLVDEVKKREVLYL 85 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI--LFDVHEKEKKIEISNDELQA 255 + V DP F K + E+K+I+ I L + + K + ++ +E + Sbjct: 86 EAKKVGLDKDPE-------FTK-----KITEFKKINLINTLIQKNVQAKNVTVTPEEAKK 133 Query: 256 EYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---------EQGK 305 Y++N++++ PE +R V LV Q EA + + LKKG F A+ E+G Sbjct: 134 YYDENQKEFVMPEQVRAVHILVKTEQ-EAKDLYDKLKKGGDFAATAKSVSMDTATAEKGG 192 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L S G + S +++F L KKG+ + + SFGY I V + K + T F+ Sbjct: 193 DLDFFSRGQM------EPSFDEAVFKL-KKGELSTPVKTSFGYHIIKVVDNKEAKTTDFE 245 Query: 366 EVK 368 VK Sbjct: 246 SVK 248 >gi|153872856|ref|ZP_02001627.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS] gi|152070679|gb|EDN68374.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS] Length = 576 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 83/449 (18%), Positives = 182/449 (40%), Gaps = 60/449 (13%) Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD----QAKR 184 D KFS + L +G+ + + R+ + G+ S L+ D Q R Sbjct: 49 DGKFSPSQYEQVLRYQGMTPT----AFEWEIRRSLLTDQIREGVLRSALVTDYDEQQRTR 104 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 F + RS+ Y+++ ++A + ++++++ + Y+ E RI Y+ + Sbjct: 105 FDEQQRSISYLIIPKTRFDKAVTITDADIEKYYQEHLERYKTVEKVRIEYVELSKSDLAN 164 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQ-------SLKK 292 +S + L+ Y++ K + +P ++ KEA +EA Q +K Sbjct: 165 AEPLSEEMLKERYQERKASFTTPGRWNARHILIEVGKEASVSDKEEAKQKVQDILAKIKA 224 Query: 293 GKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 G+ +LA++ QG L G+ K + + K GD + I Sbjct: 225 GESVEKLAKQFSDDIGSKNQGGDLGWFDSGTMVKPF-------EEALKSMKVGDISEPIK 277 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402 FG+ I + +++P + F++V++ + ++ +A Y ++E+ L + D Sbjct: 278 TRFGFHIIELVDVQPEKVLPFEQVREQLEADLKNEQADSAF---YGQVEQMANLAFENPD 334 Query: 403 EISRREKIVSIDLPLVDFAGKD-----------VKGKEVAAIPYKEQLLFRVFGKDDPLS 451 + ++++ D+ K + +V I + +++L F + Sbjct: 335 NLETLRGTLNLERKTTDWFDKTGGSQKNEPDSILSHPKVIEIAFSDEVLKERFNSE---- 390 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + + + + +++KE PA+ R +++V D+K K +T E + L+ + Sbjct: 391 ---PIEIAEQQMVVLRLKEHQPAKARPIDDVKDDIKSALKQERTQAETEKLGSNLLDQIK 447 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNE 540 ++G ++ K + T + R DNE Sbjct: 448 QKGDP--NVVKEQALNWSTIQWVTRKDNE 474 >gi|154175271|ref|YP_001408420.1| WbnF [Campylobacter curvus 525.92] gi|112802934|gb|EAU00278.1| WbnF [Campylobacter curvus 525.92] Length = 485 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 79/385 (20%), Positives = 165/385 (42%), Gaps = 40/385 (10%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + V I++ V+ FV F+ WG D + + +++V +VG + + F Sbjct: 1 MITWMQRNKKYLVVTIWISVIAFVGAGFVGWGAYD--LNNNKATSVATVGHRSISVQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q + + E+A +G++ + ++ L F +DIGL + Sbjct: 59 QKYNQIYEYHNNISDGKLTQEKADELGIENEAFQAVLQENLLLNFADDIGLSVSDDDILK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F D FS +++ L R IN +Y + + + ++ Sbjct: 119 YIIADKNFQN-DGVFSKNLYYDVLRRARINPNDYEKNLKTAILLDKLYYALNLPATKKDV 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A F + S++ I N + D + + +E K+NY + Y++ Sbjct: 178 EMMMASLFMQDKLSIEMIEANENEIKFNEDE----IKELWESNKNNYMT----KTLYVID 229 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV------EQL-----VFPNQKEADEA 286 ++ + KK +I+ L A Y +NKEKY + + + + E++ + ++ A E Sbjct: 230 TLYIESKKDDINQTALSAYYNENKEKYKNSDDKIMPFDEVKEEVAKDYNIEQSKTNALEK 289 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + ++KKG +LA SL++ + +FS + I + D I P ++ + Sbjct: 290 YIAVKKG----ELATNGSMSLNEDN-ATFSIDEIRGAKVGDVI---------KPFVYDN- 334 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI 371 GY+I + + P +S+++ K+ I Sbjct: 335 GYLIVKIKSTTPPQPMSYEQAKEQI 359 >gi|289679420|ref|ZP_06500310.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae FF5] gi|330897791|gb|EGH29210.1| periplasmic folding chaperone [Pseudomonas syringae pv. japonica str. M301072PT] gi|330939710|gb|EGH43005.1| periplasmic folding chaperone [Pseudomonas syringae pv. pisi str. 1704B] Length = 627 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 91/420 (21%), Positives = 175/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ ++ + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q + F E ++ D+ L +PA D S +T ++++ + Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 +PE + YI K+++ +++LQA Y+K S + R L+ N K DE Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285 Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 Q L KG+ F LA+E G S LG ++ + + D + +++++L Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K + N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLED 403 >gi|78224731|ref|YP_386478.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] gi|78195986|gb|ABB33753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] Length = 323 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 92/169 (54%), Gaps = 12/169 (7%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQ 288 KR+ F + E++ ++S++E++ YE+NK+K+ + P++ ++ ++ EA + + Sbjct: 121 KRVVVEAFLKKKVEEQAKVSDEEMKKFYEENKDKFKTGPQVH-ASHILMKSEDEAQKVLK 179 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHG 344 LK+G F +LA++ + LG FSK +P+ +F L K+G+ + ++ Sbjct: 180 ELKEGGNFEELAKKHSIDSAAAKGGDLGWFSKGSMVPE--FEKVVFGL-KEGETSGIVKT 236 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390 FGY I ++ +P+ +F EVK+ + + +K E K+K+D K+ Sbjct: 237 KFGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEVFQKLKDDIKK 285 >gi|78776717|ref|YP_393032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas denitrificans DSM 1251] gi|78497257|gb|ABB43797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas denitrificans DSM 1251] Length = 277 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEK--KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 YK+ Y + I V +K + KI ISNDEL+ Y+ NKE++ E ++ Sbjct: 89 YKEKYEEVTQRIQKEIAIQVWQKREIDKIAISNDELKKYYDANKEEFVENESVNARHILV 148 Query: 278 PNQKEADEAFQSLK--KG----KKFIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLAD 327 + +A LK KG KF++LA+ + S LG F+ + +P+ + D Sbjct: 149 EKESDAKNIIAELKPLKGDALKNKFMELAKSKSTCASAAEGGDLGYFTAGQMVPEFN--D 206 Query: 328 SIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FS+ AK+ PV FGY + ++ + K T +F EVK I ++++ KA + Sbjct: 207 KAFSMKAKEMTLEPV-KTQFGYHVIYIEDKKAKATKNFTEVKSFIEQRLKMEKAKTVMLA 265 Query: 387 DYKRLE 392 K LE Sbjct: 266 KMKELE 271 >gi|313668353|ref|YP_004048637.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640] gi|313005815|emb|CBN87269.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica 020-06] Length = 512 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/247 (19%), Positives = 106/247 (42%), Gaps = 18/247 (7%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ Q + Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSRPGADYIVRVGDEKIS---------------EQSLNA 54 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +E+A + + +L+ A L Q + +G+ ++ I P FH KF Sbjct: 55 AIQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKF 114 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 115 DHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E Sbjct: 175 RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETE 234 Query: 253 LQAEYEK 259 ++ +E+ Sbjct: 235 VKNAFEE 241 >gi|326795821|ref|YP_004313641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas mediterranea MMB-1] gi|326546585|gb|ADZ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas mediterranea MMB-1] Length = 613 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/326 (18%), Positives = 134/326 (41%), Gaps = 18/326 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S++ + KI + + V F ++G+ + S + S TV V +++ + + + Sbjct: 1 MLQDIRDRSQSLIVKIIIGFIVVTFALFGVDALVTSFNSSETVAEVDGKEITRTQVLQTA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G ++ L ++ LD+L+ A L + + L ++ + Sbjct: 61 DTQRRQLISMMGNNIDPSLLDENLLQRRALDSLIELAVLKNQADGLELGVSDAQIDSLLV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL- 179 + + D F + +++ + G Y + + + V+ + S L Sbjct: 121 SAEQYQ-TDGVFDQNKYLNAIRSLGFTPL----AYKERIKESYVLSQLRSAVTESEFALP 175 Query: 180 ---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ +Y+ + D ++ L +++ ++ ++ +PE +ISY++ Sbjct: 176 SQVNAISELQNQKRTYEYVQFSLADQTEQTDVTDGELQAYYDDHQQDFVSPEQVKISYVV 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 +++++ ELQ Y+ + E L+ + + DEA K Sbjct: 236 VTTDALATNVKVTDQELQNAYQTEIAGLDTEERDASHILIDTSIRSEDEA-------KSI 288 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD 322 I AE Q K S S S +KEY D Sbjct: 289 I--AEIQSKLASGDSFASLAKEYSDD 312 >gi|329923149|ref|ZP_08278648.1| putative foldase protein PrsA [Paenibacillus sp. HGF5] gi|328941591|gb|EGG37877.1| putative foldase protein PrsA [Paenibacillus sp. HGF5] Length = 398 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 KI+++ +E++ Y++NKE + +PE ++ ++EA+ + LK+G F +A+E+ Sbjct: 214 KIKVTGEEVKEVYDQNKESFATPEQVRASHILVETKEEAEAIVKQLKEGADFATIAKEKN 273 Query: 305 KSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + + + G F + + D + ++ F L KK + + + SFGY I V++ K + Sbjct: 274 QDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTDRKEATN 331 Query: 362 VSFQEVKKDIANQMRITK 379 + ++ K++I +Q+ K Sbjct: 332 PTLEDKKEEIRSQLENQK 349 >gi|57168166|ref|ZP_00367305.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228] gi|57020540|gb|EAL57209.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228] Length = 273 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I++ + +++A YE+NKEKY P + ++ +++EA + + LK Sbjct: 97 ILVNVYQEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF QLA+E+ G LG F + + D+ F+L T + Sbjct: 157 LKGKALDDKFSQLAQEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F +VKK I N ++ Sbjct: 216 KTNFGYHVILKENSRAKEQIKFDDVKKGIENGLK 249 >gi|213521163|gb|ACJ50520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens] Length = 279 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 127/272 (46%), Gaps = 28/272 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58 ML+ IR S+ W+AK + ++ G+ +A+F SG++ V V +++ + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGI-EAIFQASGNNKQDVAKVNGEEITQTELSQ 59 Query: 59 SWKQELGMISQKIG-----FVVNSERARSVGLDKKILDN--LVSGATLDQFIEDIGL-EA 110 + + + Q++G +++ + R L K ++D L+ GA +F G EA Sbjct: 60 AVDMQRRQLMQQLGKDFDASLLDEKLLRDAAL-KGLIDRKLLLQGAADSKF----GFSEA 114 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 +V I ++P F D KF+ + F + + G + ++ +ML++ ++G Sbjct: 115 ALDQV---ILQTPEFQ-VDGKFNAERFDQVVRQLGYSRLQF----RQMLTQEMLIGQVRA 166 Query: 171 GMRPSNLLLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 G+ S + D A+ F E ++ D+ +N + PA ++ + +++++ + P Sbjct: 167 GIAGSGFVTD-AEVLAFARLEKQTRDFATVNIKADPAAVKLTDDEVKAYYDQHAKEFMTP 225 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + I Y+ ++ + +DELQA YEK Sbjct: 226 DQVVIDYLELKKSSFFDQVTVKDDELQAAYEK 257 >gi|330972584|gb|EGH72650.1| periplasmic folding chaperone [Pseudomonas syringae pv. aceris str. M302273PT] Length = 627 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 94/427 (22%), Positives = 179/427 (41%), Gaps = 58/427 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105 Q + M +++ ++ + + LD+K+L L+ GAT +F D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L+ ++ ++P F D KF+ D F + + G + ++ +ML + ++ Sbjct: 117 AALDQ-------QLLQAPEFQ-VDGKFNADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164 Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFE 218 G G+ S + D Q + F E ++ D+ L +PA D S +T ++ Sbjct: 165 GQVRAGVAGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYD 219 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + +PE + YI K+++ +++LQA Y+K S + R L+ Sbjct: 220 EHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEV 278 Query: 279 NQKEADEAF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLA 326 N K DE Q L KG+ F LA+E G S LG ++ + + D + Sbjct: 279 NDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFE 337 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +++++L K PV FG+ + + ++ SF +K + N ++ +K E Sbjct: 338 EALYALNKDQVSQPV-RTDFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVE 396 Query: 387 DYKRLEE 393 K+LE+ Sbjct: 397 VTKQLED 403 >gi|288817631|ref|YP_003431978.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6] gi|288787030|dbj|BAI68777.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6] gi|308751229|gb|ADO44712.1| Formiminotransferase domain protein [Hydrogenobacter thermophilus TK-6] Length = 444 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 82/383 (21%), Positives = 159/383 (41%), Gaps = 83/383 (21%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVP----FSSFINSWKQELGMISQKIGFVVNSERA 80 F +W LF + SVG++ V + +++EL S + S Sbjct: 23 FFLW-----LFFTGSVRDITSVGKKCVAEVNGSCITLRDYRRELLRFSN-----IQSRDL 72 Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 V + K++++NL++ L Q +G A V I P F + FS + Sbjct: 73 EEV-IKKQVIENLITQELLYQKARSLGFYASDEEVVSVIKSDPTFQ-EGGVFSASKYKEM 130 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 LAR G+ EY D+ +ML+ ++ + +++ L +A++ N +V +L+ + Sbjct: 131 LARLGLEPGEYEDYIRRMLTVQKLLALV-----SNSVYLSEAEKNI--NLAVQSTLLSGK 183 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 I PS+ +SY + +E+ + YEKN Sbjct: 184 LY--IITPSDV-------------------EVSYT------------PTQEEMMSFYEKN 210 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 KE + PE + V ++ + +E ++++K+GK+ QG +++ + Sbjct: 211 KELFRRPEKKLVRVWAEKDKAKVEEIYRAIKEGKQV------QG----------YTEYLL 254 Query: 321 PDVS------LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 PD + ++ + L +K G Y+I ++ ++P+ SF+EVK+ I + Sbjct: 255 PDDANRLPKGVSSEVSKLDQKDGILVTKEGD-EYLIVYLYRVEPAGIRSFEEVKEQIRSA 313 Query: 375 M----RITKASEKVKEDYKRLEE 393 + + + +K +E YKRL E Sbjct: 314 LIDKRKASLLRDKAQEIYKRLTE 336 >gi|66044996|ref|YP_234837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae B728a] gi|63255703|gb|AAY36799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae B728a] Length = 627 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 91/420 (21%), Positives = 175/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ ++ + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADARFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KF+ D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFNADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q + F E ++ D+ L +PA D S +T ++++ + Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 +PE + YI K+++ +++LQA Y+K S + R L+ N K DE Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNDE 285 Query: 286 AF--------QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 Q L KG+ F LA+E G S LG ++ + + D + +++++L Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ SF +K + N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLED 403 >gi|322378577|ref|ZP_08053017.1| conserved hypothetical secreted protein [Helicobacter suis HS1] gi|321148985|gb|EFX43445.1| conserved hypothetical secreted protein [Helicobacter suis HS1] Length = 481 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 26/273 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+ ++K + V I++ + FV + G FS++ + V VGR + Sbjct: 1 MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59 Query: 60 WKQELGMISQKI-GFVVNSER-ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ L + SQ I F SE+ +++GL+ L L++ A L D+GL V Sbjct: 60 HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI +S F + + F L ++ + E Y + + ++ + + P + Sbjct: 120 EIQKSTAFQNEGH------FDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAI 173 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKRI 232 + + F + R D + + + +P V+TQ ++ ++K+ Y+ P Sbjct: 174 TPLEEEAFLWPLRLQDQVRIE------VLEPKEVVVTQQALRDYYNQHKNTYKKPP---- 223 Query: 233 SYILFDVHEKEKKIEISNDE-LQAEYEKNKEKY 264 SY L H + IE + E LQA YEKNK+ Y Sbjct: 224 SYTLAASHITDTDIEPAKQEQLQAYYEKNKQVY 256 >gi|322380902|ref|ZP_08054980.1| peptidylprolyl isomerase [Helicobacter suis HS5] gi|321146670|gb|EFX41492.1| peptidylprolyl isomerase [Helicobacter suis HS5] Length = 481 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 26/273 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+ ++K + V I++ + FV + G FS++ + V VGR + Sbjct: 1 MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59 Query: 60 WKQELGMISQKI-GFVVNSER-ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ L + SQ I F SE+ +++GL+ L L++ A L D+GL V Sbjct: 60 HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI +S F + + F L ++ + E Y + + ++ + + P + Sbjct: 120 EIQKSTAFQNEGH------FDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAI 173 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYRAPEYKRI 232 + + F + R D + + + +P V+TQ ++ ++K+ Y+ P Sbjct: 174 TPLEEEAFLWPLRLQDQVRIE------VLEPKEVVVTQQALRDYYNQHKNTYKKPP---- 223 Query: 233 SYILFDVHEKEKKIEISNDE-LQAEYEKNKEKY 264 SY L H + IE + E LQA YEKNK+ Y Sbjct: 224 SYTLAASHITDTDIEPAKQEQLQAYYEKNKQVY 256 >gi|154684591|ref|YP_001419752.1| YacD [Bacillus amyloliquefaciens FZB42] gi|154350442|gb|ABS72521.1| YacD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K I+IS+ E+Q+ Y KNKE Y + + +V N+ EAD LK G F +A E+ Sbjct: 130 KDIDISDKEMQSFYNKNKELYHFDDSYRIRHIVVKNKDEADRVLADLKGGSSFEAVAAER 189 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + ++E IP + ++ + P I S GY + + Sbjct: 190 STDRYTSQYGGDLGFVTENQENIPQAYITEAKKLKEDEWSVEP-IKVSSGYAVIQLKEKL 248 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 S T S+ EVK I Q+ + + +K Sbjct: 249 KSRTFSYNEVKSQIRRQIAMEQLGDKA 275 >gi|189426095|ref|YP_001953272.1| hypothetical protein Glov_3046 [Geobacter lovleyi SZ] gi|189422354|gb|ACD96752.1| conserved hypothetical protein [Geobacter lovleyi SZ] Length = 531 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 87/426 (20%), Positives = 166/426 (38%), Gaps = 60/426 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-----LIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML++IRK + V K V++ + F L+WG D S + V R + + Sbjct: 1 MLDVIRKKKESVVIKAVFVIIVLSFIGTIFLVWGKGDEGMGRS-AGYAAKVDRTTISLEA 59 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + N+++ Q G E + + L ++ +D L+ + + + G+ + Sbjct: 60 YQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSKEEI 119 Query: 116 WGEIARSPLFHG-------------KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 IA F K N+ + D F RE + EK +R Sbjct: 120 SAAIAGMSAFQQNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEK----------TRK 169 Query: 163 DVVGMFVGGMRPSNLLLDQA-KRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEK 219 V+ V + D+A K+F+ E ++ Y + V A +A L + K Sbjct: 170 AVMDKVV-------ISDDEALKQFHKEQDKLELSYASFSAADVSAEVKLGDADLQDYLTK 222 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS------PEIRTVE 273 + +++PE +S+ + + + ++ +E ++ Y KN ++Y P + E Sbjct: 223 NAEKFKSPEKIALSWFVLENSGQSHVQAVTAEEQESFYRKNMDRYVDKDNAPLPYEQVKE 282 Query: 274 QLVFPNQKE----------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-- 321 ++ Q++ AD FQ++K G + +A + G D L S + Sbjct: 283 RVKADAQRQKAAKALYEKAADTLFQNIKSGDLGL-VAAKLGAKTQDTPLFSANAAPAALA 341 Query: 322 -DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + +L F L K+G+ + + G I V K + +V+ + Q+R KA Sbjct: 342 GETALLKKAFEL-KQGELGGPVETAKGIYIFKVKEKKAAELPPLAQVRTTVEQQLRALKA 400 Query: 381 SEKVKE 386 +E K+ Sbjct: 401 AELAKQ 406 >gi|326390841|ref|ZP_08212393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus JW 200] gi|325993100|gb|EGD51540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus JW 200] Length = 301 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 28/168 (16%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 LFD + K+ ++++ +EL+ YE NKE++ E+ ++ ++K A++ + L KG+ Sbjct: 134 LFDEYTKD--VKVTEEELKKYYEDNKEQF---EVVKASHILVADEKTAEDIYNRLMKGED 188 Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F LA+E QG L + G E+ +FSL KKG+ + + + Sbjct: 189 FATLAKEYSIDTATKDQGGDLGEFPHGVMVSEF------DQVVFSL-KKGEISKPVKTDY 241 Query: 347 GYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I IKP F EVK I + + K ++ +KE Y LE Sbjct: 242 GYHIIKSEGVAIKP-----FNEVKDAIESYLLNDKKNQVIKEKYDALE 284 >gi|307265095|ref|ZP_07546655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919893|gb|EFN50107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 301 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 28/168 (16%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 LFD + K+ ++++ +EL+ YE NKE++ E+ ++ ++K A++ + L KG+ Sbjct: 134 LFDEYTKD--VKVTEEELKKYYEDNKEQF---EVVKASHILVADEKTAEDIYNRLMKGED 188 Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F LA+E QG L + G E+ +FSL KKG+ + + + Sbjct: 189 FATLAKEYSIDTATKDQGGDLGEFPHGVMVSEF------DQVVFSL-KKGEISKPVKTDY 241 Query: 347 GYVIAHVS--NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I IKP F EVK I + K ++ +KE Y LE Sbjct: 242 GYHIIKSEGITIKP-----FDEVKDAIEGYLLDDKKNQVIKEKYDALE 284 >gi|148378054|ref|YP_001252595.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. ATCC 3502] gi|153931321|ref|YP_001382453.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936847|ref|YP_001386006.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. Hall] gi|153940453|ref|YP_001389411.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F str. Langeland] gi|168181156|ref|ZP_02615820.1| peptidil-prolyl isomerase family protein [Clostridium botulinum NCTC 2916] gi|170757604|ref|YP_001779674.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1 str. Okra] gi|226947272|ref|YP_002802363.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2 str. Kyoto] gi|148287538|emb|CAL81602.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum A str. ATCC 3502] gi|152927365|gb|ABS32865.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932761|gb|ABS38260.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. Hall] gi|152936349|gb|ABS41847.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F str. Langeland] gi|169122816|gb|ACA46652.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1 str. Okra] gi|182668005|gb|EDT79984.1| peptidil-prolyl isomerase family protein [Clostridium botulinum NCTC 2916] gi|226843846|gb|ACO86512.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2 str. Kyoto] gi|295317521|gb|ADF97898.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F str. 230613] Length = 247 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316 NKE++ + E+ T ++ +++EA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + +P+ A A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222 Query: 376 RITKASEKVKE 386 K +++ E Sbjct: 223 LQEKQNQQYNE 233 >gi|322804319|emb|CBZ01869.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065] Length = 247 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316 NKE++ + E+ T ++ +++EA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEEEANSIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + +P+ A A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222 Query: 376 RITKASEKVKE 386 K +++ E Sbjct: 223 LQEKQNQQYNE 233 >gi|168185280|ref|ZP_02619944.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf] gi|237793360|ref|YP_002860912.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4 str. 657] gi|182671671|gb|EDT83632.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf] gi|229264108|gb|ACQ55141.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4 str. 657] Length = 247 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFS 316 NKE++ + E+ T ++ +++EA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 K-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + +P+ A A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMVPEFEKA---VLEAEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKL 222 Query: 376 RITKASEKVKE 386 K +++ E Sbjct: 223 LQEKQNQQYNE 233 >gi|114566203|ref|YP_753357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337138|gb|ABI67986.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 324 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 I I +ELQ Y++N + + ++ KEA E L++G F QLA+E Sbjct: 164 ITIEEEELQQYYQENIASFQEAAGMQISHILVATDKEARELLTQLQQGADFAQLAQEHSS 223 Query: 306 SLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKP 358 S G + Y+P+ ++ L K G+ T PV FGY I ++P Sbjct: 224 CASKAQGGYLGVVNENSNYVPE--FKNAALQL-KAGEITQEPV-KSDFGYHIIKAGQLQP 279 Query: 359 SFTVSFQEVKKDIANQMRITKASEK 383 + T SF EVK NQ+R+ EK Sbjct: 280 TTTKSFDEVK----NQIRMQLEKEK 300 >gi|313679732|ref|YP_004057471.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] gi|313152447|gb|ADR36298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] Length = 308 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 16/137 (11%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 +++ IS + Y ++E Y PE ++ P+++EA++ LK G F +LA E Sbjct: 149 QRLRISEAATRMLYLLDREAYAEPEQICTAHILVPSREEAEDVIARLKGGADFAELAREV 208 Query: 303 --------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +G L ++LG F E+ + +L + G + + FG+ + ++ Sbjct: 209 SQDPGSAPRGGDLGCVALGRFVPEF------ERAALAL-QPGQVSEPVQTQFGWHVIRMN 261 Query: 355 NIKPSFTVSFQEVKKDI 371 + +P+ + ++EV+ I Sbjct: 262 DRRPARVLPYEEVRGQI 278 >gi|257459731|ref|ZP_05624840.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268] gi|257443156|gb|EEV18290.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268] Length = 274 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 19/165 (11%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E+ K + +S++E + Y++NK+ + P+ T ++ ++K A A L K KK L Sbjct: 105 EQAKDVSVSDEEAKKIYDENKQNFMQPDSVTASHILVADEKAAKNAIAKLSKVKKE-NLK 163 Query: 301 EEQGKSLSDIS-----------LGSFSKEY-IPDVSLADSIFSLAKKGDF--TPVIHGSF 346 EE K +IS LGSF K +P+ A F+L K G+ TPV F Sbjct: 164 EEFNKLAKEISIDPSAKENGGDLGSFGKGMMVPEFEKA--AFAL-KDGEMSKTPV-KTQF 219 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 GY + + + K + T+ F++VK I NQ+ +K ++K+ + L Sbjct: 220 GYHVIYKESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANEL 264 >gi|71737764|ref|YP_273939.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558317|gb|AAZ37528.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 627 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/421 (20%), Positives = 172/421 (40%), Gaps = 46/421 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDN-----------LVSGATLDQF-IED 105 Q + M +++ + + + S LD+K+L L+ GAT +F D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDSAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L+ ++ ++P F D KFS D F + + G + ++ +ML + ++ Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164 Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 G G+ S + D Q F E ++ D+ L ++ + ++++ Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + +PE + YI K+++ +++LQA Y+K S + R L+ N K Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283 Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332 DE Q L KG+ F LA+E + S G ++ + + D + D++++L Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K PV FG+ + + ++ +F +K + ++ +K E K+LE Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402 Query: 393 E 393 + Sbjct: 403 D 403 >gi|289642554|ref|ZP_06474697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of Datisca glomerata] gi|289507642|gb|EFD28598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of Datisca glomerata] Length = 391 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----Q 303 +++D+L + YE ++ + P R + +V ++EAD+ + + G F LA E + Sbjct: 174 VTDDQLPSYYESHRADFAVPAQRHLRNIVVATREEADQVVRRARDGADFAALAGETSLDE 233 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG + + D A + F++ F PV +G+ + V +P+ S Sbjct: 234 STRSSQGDLGFVTASQL-DAEYAKAAFAVPVGSVFGPV-QTRYGWNVGQVLEDRPASQPS 291 Query: 364 FQEVKKDIANQMRITKA 380 F++VK + + +R +A Sbjct: 292 FEQVKDQVRDALRSERA 308 >gi|330721964|gb|EGG99902.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC2047] Length = 471 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 78/372 (20%), Positives = 152/372 (40%), Gaps = 84/372 (22%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE-----QLVFPNQKEADEA- 286 SY+ + +E I IS+ E+QA YE+N Y S E +E Q F + + DEA Sbjct: 35 SYLTINANELAADIVISDAEVQAYYEENLADYMSEESLKIEYLELKQADFASNIDVDEAE 94 Query: 287 ----FQS--------------------------------------LKKGKKFIQLAE--- 301 +Q +K G+ F +LA+ Sbjct: 95 IEQLYQQETDALAAQQERRAAHILITEEARSSNEAEQLIIELQNKIKAGEDFAELAKRYS 154 Query: 302 ------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 E G L + G+F E+ +FSL +G+ + ++ FGY + + Sbjct: 155 EDPGSAENGGDLGFVEKGAFVPEF------EQVLFSL-NEGEVSDIVETEFGYHLIRLEE 207 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 ++ F+ ++ +A ++R KA E+ + L+ + E ++ + + + Sbjct: 208 LRTPEAEPFEMARERLAGELRFRKAEEEFVAAAEELQNDSFSAGDLVEPAQNQ---GLSI 264 Query: 416 PLVDFAGKDVKGKEVAA------IPYKEQLLFRVFGKD-DPLSKDHTVALPDGSYMWVQI 468 +F + +G +AA + + ++LL D LSKDH +++ Sbjct: 265 QTTEFFSRQ-QGSGIAAFEKVRRVAFSDELLTEGNNSDLIELSKDHVAV--------IRV 315 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 K+ P++ + LEEV +D++ K + A++ + K + +L ++GK + + G L Sbjct: 316 KQHNPSKPQALEEVASDIRSTLK-ARAAQQNAQKMGEQILVELRDGKTLQQASDDYGYPL 374 Query: 529 LTTNQINRMDNE 540 + +NR+ N+ Sbjct: 375 NSYQGVNRIAND 386 >gi|226355582|ref|YP_002785322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti VCD115] gi|226317572|gb|ACO45568.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Deinococcus deserti VCD115] Length = 626 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 8/145 (5%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302 + +++++ ++QA Y +NK ++ SP TV++ F ++ +A AF++ G+ F A + Sbjct: 419 RNVKVTDADVQAFYTQNKAQFQSPATATVDEASFKDRSKA-LAFRNTWNGQGSFATAASK 477 Query: 303 QGKSLSD-----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 QG ++S+ G +E V A ++ S A +G + V+ Y +A+V+++K Sbjct: 478 QGGTVSERGSVTAGDGKLGQELNAAVFSARTLKS-AGEGSLSDVVKVGERYSVAYVTDLK 536 Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382 P+ T V+ I +Q+ TK +E Sbjct: 537 PATTQPLSAVRSQIESQVLATKRNE 561 >gi|315452770|ref|YP_004073040.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC 49179] gi|315131822|emb|CBY82450.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC 49179] Length = 482 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 87/407 (21%), Positives = 165/407 (40%), Gaps = 53/407 (13%) Query: 5 IRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 ++K + V I++ + F+ + G FS++ S +V VGR + K+ Sbjct: 1 MQKHKKYLVVTIWISTIAFIAAGMIGWGQYSFSMA-SGSVAKVGRVLITSEELEMERKRL 59 Query: 64 LGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + SQ I ++ ++ ++GL+K L L++ A L D+GL + EI + Sbjct: 60 VDAYSQSIPNFKDLDEKQIAAMGLEKTALRMLINQAYLKNLALDLGLGVSDAEIATEIQK 119 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF----VGGMRPSNL 177 S LF KD F D++ L +HY L +V V G+ PS Sbjct: 120 SALFQ-KDGHFDVDLYKKVLQD---------NHYRPALFEENVKNALILQKVSGLFPSAT 169 Query: 178 LLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + F + + D I +L H P + S L +++++K+ Y+ P Y Sbjct: 170 TPLEKEAFTYPLKIQDRISIKILEASHAPIQLEES--ALKAYYDQHKNTYKKP----TRY 223 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQ-----LVFPNQKEADE-- 285 L + K K + L+ Y+ K Y + + T E+ + NQ +A E Sbjct: 224 TLQTLWIKPKTATLDQSILRKYYQDRKSNYTDAQGKLETFEKAKDRVIHDYNQAQAKENA 283 Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + +LK+G + +S +D+ G+ D+ D+ + G+ + Sbjct: 284 LKQYLALKRGN-----LNPKKESFTDLPYGT-------DI---DTKIIAMQPGEVLKPLE 328 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 GY++ + SFQE K +I ++ + +K++ ++ Sbjct: 329 YKEGYLVVKLVEKSSGLLKSFQEAKSEIMATLQAEAQQKWLKQEAQK 375 >gi|304406731|ref|ZP_07388386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304344264|gb|EFM10103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 362 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 + +I I++ E++ Y +N E PE ++ + EAD + L G F +A++ Sbjct: 200 QSRIHITDQEVRDYYTENLEYITQPEQVRASHILVETKAEADIIVKELNNGGDFATIAKQ 259 Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + G + LG F + + D S D+ FSL K G+ + + FGY I V++ K Sbjct: 260 KSLDTGSKNAGGDLGYFERG-VMDQSFEDAAFSL-KVGEISKPVKSEFGYHIILVTDHKA 317 Query: 359 SFTVSFQEVKKDIANQMRITKASE 382 + T +F+E K I + K E Sbjct: 318 AVTPTFEEEKATIREMLTTEKIYE 341 >gi|297519828|ref|ZP_06938214.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 141 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 7/138 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQY-SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVK 118 Query: 117 GEIARSPLFHGKDNKFSH 134 I +P F D KF + Sbjct: 119 QAIFATPAFQ-VDGKFDN 135 >gi|305431687|ref|ZP_07400856.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20] gi|304445282|gb|EFM37926.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20] Length = 273 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I++ + +++A YE+NKEKY P + ++ +++EA + + LK Sbjct: 97 ILVNVYQEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK F QLA+E+ G LG F + + D+ F+L T + Sbjct: 157 LKGKALDDNFSQLAQEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F +VKK I N ++ Sbjct: 216 KTNFGYHVILKENSRAKEQIKFDDVKKGIENGLK 249 >gi|289627508|ref|ZP_06460462.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649941|ref|ZP_06481284.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868371|gb|EGH03080.1| periplasmic folding chaperone [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 627 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 88/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105 Q + M +++ + + + LD+K+L L+ GAT +F D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L+ ++ ++P F D KFS D F + + G + ++ +ML + ++ Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164 Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 G G+ S + D Q F E ++ D+ L ++ + ++++ Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + +PE + YI K+++ +++LQA Y+K S + R L+ N K Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283 Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332 DE Q L KG+ F LA+E + S G ++ + + D + DS+++L Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDSLYAL 343 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K PV FG+ + + ++ +F +K + ++ +K E K+LE Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402 Query: 393 E 393 + Sbjct: 403 D 403 >gi|77164285|ref|YP_342810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|254434865|ref|ZP_05048373.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] gi|76882599|gb|ABA57280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|207091198|gb|EDZ68469.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] Length = 304 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 26/148 (17%) Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 Y+ N EKY PE V ++ ++ ++E + L +K QLA + K S+++L Sbjct: 135 YQANPEKYQQPERVKVSHILIKTEERSEEEAKKL--AEKVRQLALTEEKPFSELAL---- 188 Query: 317 KEYIPDVSLA-------------------DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 EY D SL ++ F+L + G+ +PV+ FG+ I + + Sbjct: 189 -EYSEDPSLEKNKGDLGFIVKGVTTKPFEEAAFALEQPGEISPVVKSRFGFHIIRLEERQ 247 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVK 385 T SF+EVK+ + ++R T ++ V+ Sbjct: 248 APKTKSFEEVKERLVEKIRETHLNQVVQ 275 >gi|328676007|gb|AEB28682.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida 3523] Length = 477 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 24/228 (10%) Query: 97 ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 A L Q I+ + AD R + I +P+F KD KFS D +A G Sbjct: 72 AILSQMIDQYLILADAQRHNIVVSKLALQSAIFTNPMFFDKDGKFSADKLKQVVAYLG-- 129 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR----FYFENRSVDYIVLNNRHVP 203 +D +ML++ + + ++L+ D + Y N+ +DY ++ Sbjct: 130 ---GMDRLEQMLTQNIQATIIPKTIVDTSLVTDYDTKSLASIYSVNKYIDYFKVSPADFK 186 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262 + PS L +++ +K+ Y P K ISY + K +I DE+++ YE +KE Sbjct: 187 SQIKPSQQDLQSYYDVHKNEYITPAQKTISYFIITKDNFVPKNKIGEDEIKSYYEAHKEL 246 Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK---KFIQLAEEQGKS 306 K F ++ Q + N + A E F + K+ +L ++ GK+ Sbjct: 247 FKDFDDNTKSTIQKIIQN-RHALEQFNEYTQNVDSIKYAKLEKQLGKA 293 >gi|15611978|ref|NP_223629.1| hypothetical protein jhp0911 [Helicobacter pylori J99] gi|4155485|gb|AAD06486.1| putative [Helicobacter pylori J99] Length = 487 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/309 (21%), Positives = 138/309 (44%), Gaps = 28/309 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L F D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTNVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E ++ +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYENHRKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287 FD ++ ++ EL+ Y KNK Y E ++V++ V QK ++A Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKAL 288 Query: 288 QS---LKKG 293 +S LKKG Sbjct: 289 RSYIALKKG 297 >gi|317014385|gb|ADU81821.1| hypothetical protein HPGAM_05060 [Helicobacter pylori Gambia94/24] Length = 487 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 121/273 (44%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L F D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLIIQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E ++ +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYENHRKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKE 261 >gi|319790371|ref|YP_004152004.1| SurA domain protein [Thermovibrio ammonificans HB-1] gi|317114873|gb|ADU97363.1| SurA domain protein [Thermovibrio ammonificans HB-1] Length = 436 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 160/390 (41%), Gaps = 77/390 (19%) Query: 1 MLEIIRKASRTWVAKIFLVVL-FVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML IRK R + +++V FV FL+WG FS S V +V Q + + F Sbjct: 1 MLSKIRKNLRAFSIPLWIVAASFVGTIFLVWGRGS--FSGPSGSQVATVNGQPITLAEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +K + +K+G N + + + + L LV A L + ++ GL+ V Sbjct: 59 REYKTVEDELRRKLGDNFN-KLVKPNDIKRIALQRLVQRALLIELAKEEGLKVSDWAVAK 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P+F ++ KFS ++ + L +G+ + + + K L V+ Sbjct: 118 AIEEMPIFQ-ENGKFSVKLYKAFLRAQGLTPQAFEETVRKDLLVQKVL------------ 164 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 V+N H P++ + A LT E YK ++ ++I Y +F Sbjct: 165 -----------------TVVN--HAPSV---TQAELT---ELYKKSFGQ---RKIGYKVF 196 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKK 292 + K+ S +E++ Y+K+KE++ KEA E +F++ + Sbjct: 197 TADQFNPKV--SEEEVEQFYKKHKEQF---------------TKEAGEEVYLLSFENTPQ 239 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 GK+ + A E K L +F+ + P+ LAK+ P I S + Sbjct: 240 GKERAKEAYELAKKGELEKLKAFNPKPAPE--------KLAKELQKRPFIFRSENGRLIL 291 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +K S TV ++VK I Q++ KA E Sbjct: 292 AFKLKKSETVPLEKVKAQIEEQLKEEKALE 321 >gi|313679080|ref|YP_004056819.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] gi|313151795|gb|ADR35646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] Length = 621 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + E KK++++++E + YE +K +Y + + Q+V +Q AD+ ++ L G F + Sbjct: 150 IDELRKKVKLTDEEARFYYELHKGEYAAEDRVKARQIVLDDQATADQVYKQLIGGADFAE 209 Query: 299 LAE-------EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 LA EQG ++ G ++ P +AD++F L K G T VI Sbjct: 210 LARQYSKVGAEQGGAVGAEPGSSEPGPVTRLVFP-TPVADAVFQL-KSGGMTEVIETGGR 267 Query: 348 YVIAHVSNIKPSFTVSFQEV 367 Y I V P V ++EV Sbjct: 268 YYIVKVEEFLPGGDVPYEEV 287 Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 40/70 (57%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 K K + ++ DE++A YE+N ++ P TV+ + F +++ AD+ + L G +LA+ Sbjct: 412 KTKDVTVTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFREKLIAGDPLEELAK 471 Query: 302 EQGKSLSDIS 311 G +SD+ Sbjct: 472 GLGGQVSDLG 481 >gi|332798476|ref|YP_004459975.1| Foldase protein prsA [Tepidanaerobacter sp. Re1] gi|332696211|gb|AEE90668.1| Foldase protein prsA [Tepidanaerobacter sp. Re1] Length = 300 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEK-EKKIEISNDELQAEYEKNKEKYFSPEIR 270 LTQ+ E Y Y E K + +V + E I+I E+++ +++NK + +PE Sbjct: 110 ALTQFLEMY--GYSLDEIKENIKMNLNVKKLLEPTIKIEESEIKSYFDENKASFDTPEQV 167 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIP 321 ++ +++A E Q L+ G+ F +LA+ +QG L S G + E+ Sbjct: 168 KASHILVDTEEKAKEVKQKLQDGEDFAELAKTYSTDTSNNQQGGELGYFSKGQMTPEF-- 225 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 ++ FSL K G+ + + FGY I V + K + +++E K ++ N Sbjct: 226 ----EEAAFSL-KAGEISDPVKTEFGYHIIKVEDKKEAKEATYEESKDEVKN 272 >gi|317180180|dbj|BAJ57966.1| hypothetical protein HPF32_0384 [Helicobacter pylori F32] Length = 487 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAIHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|115375700|ref|ZP_01462954.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] gi|115367263|gb|EAU66244.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] Length = 204 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++ ++ +EL+A Y ++ ++ PE QLV EA LK GKKF LA Sbjct: 27 RVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFADLARRY- 85 Query: 305 KSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 SLS + LG F + +P V + +F+L + G + V+ +GY + V KP+ Sbjct: 86 -SLSADAKVGGDLGFFPRGQMPPV-FDEVVFNL-RPGQVSDVVSTEYGYHLFRVLEFKPA 142 Query: 360 FTVSFQEVKKDI 371 F EV+ + Sbjct: 143 RKRDFVEVRAKV 154 >gi|298486267|ref|ZP_07004330.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159274|gb|EFI00332.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 627 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 87/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105 Q + M +++ + + + LD+K+L L+ GAT +F D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L+ ++ ++P F D KFS D F + + G + ++ +ML + ++ Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164 Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 G G+ S + D Q F E ++ D+ L ++ + ++++ Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + +PE + YI K+++ +++LQA Y+K S + R L+ N K Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283 Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332 DE Q L KG+ F LA+E + S G ++ + + D + D++++L Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K PV FG+ + + ++ +F +K + ++ +K E K+LE Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402 Query: 393 E 393 + Sbjct: 403 D 403 >gi|302389639|ref|YP_003825460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter oceani DSM 16646] gi|302200267|gb|ADL07837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter oceani DSM 16646] Length = 297 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 20/155 (12%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-- 300 E KI I+ +E+++ +E+NK+ + + ++ N+++A+E LK G+ F +LA Sbjct: 134 EPKISITEEEIKSYFEENKDNFAREKQVRARHILVENEEKANEVIAKLKSGEDFAELAKQ 193 Query: 301 -------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +E+G L G KE+ ++ FSL K G+ + + +GY I V Sbjct: 194 YSTDTATKEKGGDLGFFGRGDMVKEF------EEAAFSL-KVGEISSPVKTQYGYHIIKV 246 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 IK + +++E K I + + ++KV+++Y Sbjct: 247 EEIKEAQEANYEESKDKIKDIL----LNQKVQQEY 277 >gi|313888122|ref|ZP_07821796.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845812|gb|EFR33199.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 362 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 15/158 (9%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 EK K++E + +E++ +YE NK+ Y+ + ++ + KEA+ + + KG+ F + Sbjct: 152 TQEKLKELEPTEEEVKKQYEDNKDSYYKAK---ASHILVDDLKEANVLRKKILKGEDFAK 208 Query: 299 LAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E G + + SLG F+ + V D + K GD + I FGY I + Sbjct: 209 LAKENSKDTGSAQNGGSLGEFTSGQM--VEAFDKEIAKMKVGDISEPITTQFGYHIIKLE 266 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYK 389 + KP + F VK I Q++ K E KVK+D K Sbjct: 267 DKKP---LEFDAVKDQIKAQLQQEKFKEYIDKVKKDAK 301 >gi|308184755|ref|YP_003928888.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori SJM180] gi|308060675|gb|ADO02571.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori SJM180] Length = 487 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKE 261 >gi|254779571|ref|YP_003057677.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori B38] gi|254001483|emb|CAX29488.1| Putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori B38] Length = 487 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|56707753|ref|YP_169649.1| hypothetical protein FTT_0628 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670224|ref|YP_666781.1| hypothetical protein FTF0628 [Francisella tularensis subsp. tularensis FSC198] gi|224456823|ref|ZP_03665296.1| hypothetical protein FtultM_03409 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370257|ref|ZP_04986262.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874566|ref|ZP_05247276.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604245|emb|CAG45261.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320557|emb|CAL08644.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|151568500|gb|EDN34154.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840565|gb|EET19001.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282158924|gb|ADA78315.1| hypothetical protein NE061598_03585 [Francisella tularensis subsp. tularensis NE061598] Length = 476 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 35/309 (11%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K TW+ I + +FV I G++ ++ + V VG ++ F + Q Sbjct: 10 KGPFTWIVVISISFIFV---ISGMTFFFTNIGSRAYVAKVGDNEISSQQF-QQYAQSATT 65 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 QK + S +D+ ++ L D + + L++ I +P+F Sbjct: 66 EEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPMFF 109 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF- 185 KD KFS + +A G +D ++L++ + + +++++D + Sbjct: 110 DKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTKLL 164 Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 165 NSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNF 224 Query: 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFI 297 K +IS DE++A Y+ +KE K F ++ Q + N + A E F + K+ Sbjct: 225 VLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYT 283 Query: 298 QLAEEQGKS 306 +L ++ GK+ Sbjct: 284 KLEKQFGKA 292 >gi|91202358|emb|CAJ75418.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 318 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K I +S ++LQ Y K E +Q+V ++EA+EA + L+ G ++A+ Q Sbjct: 164 KTISVSEEDLQEAY-----KSIYGEKIEAQQIVLKTKREAEEALEKLRLGADITKMAKAQ 218 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + S + P+ + S+ L K G+ + +I+ ++GY I ++ K Sbjct: 219 SIDRASASRDGKMLPFSPEDDIGKSVAHL-KPGELSGIINTNYGYHIVKITGRKTGSDKK 277 Query: 364 FQEVKKDIANQMRITKASEKVK 385 F VKK++ +R K E+++ Sbjct: 278 FDTVKKELEELVREKKYRERLR 299 >gi|242308919|ref|ZP_04808074.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524583|gb|EEQ64449.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 489 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 80/389 (20%), Positives = 158/389 (40%), Gaps = 39/389 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQK 70 W++ I + F+ WG +S S +S V+V G KV + + + +Q Sbjct: 17 WISTIAFI--GAGFVGWGS----YSFSSTSNAVAVVGDIKVSIDKMQREYARLYNIYNQL 70 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 +G ++ E+A+ +G++++ ++NL+ A + + D+GL + EI F K Sbjct: 71 VGGTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQEITSIEGFQNK-G 129 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 KF ++ L + K++ + + L + + + P L ++ Y Sbjct: 130 KFDEQIYKQTLKDNQLKPKDFEEGIEEGLLLQKLDALLNIPLTP--LEIEALGAAYSMED 187 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 V V+N + + + P + +++E KD Y+ IS I + I + Sbjct: 188 LVHIEVINKKDI--VFTPKEEEIKKYWENNKDIYQTQRGYEISSIFIPLD----SIAVEE 241 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-------KKFIQLAEEQ 303 + L+ Y+ K ++ + + P + D+ + + K++I L + + Sbjct: 242 NALEQYYKDFKNQFLDSNGQ-----IIPFAQAKDKVIEKFRDSQAQKEALKEYISLRKGE 296 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH----GSFGYVIAHVSNIKPS 359 + D ++ S EY D ++ S AK+ + I G GY+ A V I PS Sbjct: 297 NQEAKDSTIYEGSDEYGADFI---NLLSQAKEQETLKPIRVNNKGKEGYITAKVVKIIPS 353 Query: 360 ----FTVSFQEVKKDIANQMRITKASEKV 384 + V+ K+D N +I EK Sbjct: 354 QPQTYEVAKANAKEDYVNAEQIRLLEEKA 382 >gi|207091647|ref|ZP_03239434.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPKX_438_AG0C1] Length = 487 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|319957104|ref|YP_004168367.1| ppic-type peptidyl-prolyl cis-trans isomerase [Nitratifractor salsuginis DSM 16511] gi|319419508|gb|ADV46618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitratifractor salsuginis DSM 16511] Length = 287 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 119/245 (48%), Gaps = 21/245 (8%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP--SNAVLTQ 215 +LS +DV+ + V G + + ++ R N+ + Y +L+ + + D +L + Sbjct: 18 LLSASDVIAV-VNGHKITKAEVNTFLRQSMPNQPITYDMLDPKTKKKVLDGLIETEILAE 76 Query: 216 WFEKYKDNYRAPEYKRI-----SYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPE 268 +K + PE++++ ++ + K+ KKI +S E + Y+K+++K+ P Sbjct: 77 AAQKA-GVEKNPEFQQMLDMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDKFTRPA 135 Query: 269 IRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQLAEEQGKSLSDIS---LGSFSKEY 319 ++ ++K+A E LK KG K+FI+LA+++ + LG F K+ Sbjct: 136 QVHARHILVKSEKKAQEIIDQLKGLKGEALQKRFIELAKKESTGPTGPKGGDLGYFGKDQ 195 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + + + + F+L K T + FG+ + +V + KP+ T+ F VK + ++ + Sbjct: 196 MV-LPFSKAAFALNKGEITTKPVKTQFGWHVIYVEDKKPAQTIPFDAVKDRVIAALKQQR 254 Query: 380 ASEKV 384 +EK+ Sbjct: 255 FAEKM 259 >gi|320325365|gb|EFW81432.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. glycinea str. B076] Length = 627 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 87/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105 Q + M +++ + + + LD+K+L L+ GAT +F D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L+ ++ ++P F D KFS D F + + G + ++ +ML + ++ Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164 Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 G G+ S + D Q F E ++ D+ L ++ + ++++ Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + +PE + YI K+++ +++LQA Y+K S + R L+ N K Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283 Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332 DE Q L KG+ F LA+E + S G ++ + + D + D++++L Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K PV FG+ + + ++ +F +K + ++ +K E K+LE Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402 Query: 393 E 393 + Sbjct: 403 D 403 >gi|187776514|ref|ZP_02992987.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC 15579] gi|187775173|gb|EDU38975.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC 15579] Length = 247 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 7/133 (5%) Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGS 314 E+NKE++ + E+ T ++ ++ EA+ + +K G F + AE+ K S SLG+ Sbjct: 104 EENKEEFRTQELITARHILVDSEDEANSIYGKIKNGLDFSEAAEKYSKCPSKAQGGSLGT 163 Query: 315 FSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 F+K + +P+ A +F A+ T + FGY + V NI+ S F EVK I N Sbjct: 164 FTKGQMVPEFEKA--VFE-AEVDKVTEAVKTQFGYHLIIVDNIRESMIKPFDEVKAMINN 220 Query: 374 QMRITKASEKVKE 386 ++ K +++ E Sbjct: 221 KLLQEKQNQQYNE 233 >gi|54113793|gb|AAV29530.1| NT02FT0767 [synthetic construct] Length = 476 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 35/309 (11%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K TW+ I + +FV I G++ ++ + V VG ++ F + Q Sbjct: 10 KGPFTWIVVISISFIFV---ISGMTFFFTNIGSRAYVAKVGDNEISSQQF-QQYAQSATT 65 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 QK + S +D+ ++ L D + + L++ I +P+F Sbjct: 66 EEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPMFF 109 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF- 185 KD KFS + +A G +D ++L++ + + +++++D + Sbjct: 110 DKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTKLL 164 Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 165 NSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNF 224 Query: 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFI 297 K +IS DE++A Y+ +KE K F ++ Q + N + A E F + K+ Sbjct: 225 VLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYT 283 Query: 298 QLAEEQGKS 306 +L ++ GK+ Sbjct: 284 KLEKQFGKA 292 >gi|257483811|ref|ZP_05637852.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320327650|gb|EFW83658.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330985643|gb|EGH83746.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012683|gb|EGH92739.1| periplasmic folding chaperone [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 627 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 87/421 (20%), Positives = 171/421 (40%), Gaps = 46/421 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDN-----------LVSGATLDQF-IED 105 Q + M +++ + + + LD+K+L L+ GAT +F D Sbjct: 57 SQAVDMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSD 116 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L+ ++ ++P F D KFS D F + + G + ++ +ML + ++ Sbjct: 117 AALDQ-------QLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLI 164 Query: 166 GMFVGGMRPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 G G+ S + D Q F E ++ D+ L ++ + ++++ Sbjct: 165 GQVRAGVAGSAFVTDAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKE 224 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + +PE + YI K+++ +++LQA Y+K S + R L+ N K Sbjct: 225 FMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLN 283 Query: 284 DEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332 DE Q L KG+ F LA+E + S G ++ + + D + D++++L Sbjct: 284 DEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYAL 343 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K PV FG+ + + ++ +F +K + ++ +K E K+LE Sbjct: 344 NKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLE 402 Query: 393 E 393 + Sbjct: 403 D 403 >gi|310825131|ref|YP_003957489.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] gi|309398203|gb|ADO75662.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] Length = 330 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++ ++ +EL+A Y ++ ++ PE QLV EA LK GKKF LA + Sbjct: 153 RVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFADLA--RR 210 Query: 305 KSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 SLS + LG F + +P V + +F+L + G + V+ +GY + V KP+ Sbjct: 211 YSLSADAKVGGDLGFFPRGQMPPV-FDEVVFNL-RPGQVSDVVSTEYGYHLFRVLEFKPA 268 Query: 360 FTVSFQEVKKDI 371 F EV+ + Sbjct: 269 RKRDFVEVRAKV 280 >gi|254374458|ref|ZP_04989940.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572178|gb|EDN37832.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 477 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 38/311 (12%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64 K TW+ I + +FV I G++ F+ GSS V VG ++ F + Q Sbjct: 10 KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-QQYAQSA 64 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 QK + S +D+ ++ LV D + + L++ I +P+ Sbjct: 65 TTEEQKRAIL-------SQMIDQYLI--LVDAQRHDIVVSKLALQS-------AIFTNPM 108 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F KD KFS + +A G +D ++L++ + + ++++ D + Sbjct: 109 FFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 163 Query: 185 F----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 164 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 223 Query: 241 EKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KK 295 K +IS DE++A Y+ +KE K F ++ Q + N + A E F + K Sbjct: 224 NFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKS 306 + +L ++ GK+ Sbjct: 283 YTKLEKQFGKA 293 >gi|223039645|ref|ZP_03609931.1| foldase protein PrsA [Campylobacter rectus RM3267] gi|222879028|gb|EEF14123.1| foldase protein PrsA [Campylobacter rectus RM3267] Length = 270 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 +++S +E+ Y KNK ++ P + ++ +K+A++ +LK KG KKF +L Sbjct: 107 VKVSENEISDFYNKNKAEFAVPAQVKAKHILVAAEKDANDVIAALKGLKGDALVKKFEEL 166 Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVS 354 A+ +QG + + LG F + + AD+ F+L KKG+ T + +FGY + Sbjct: 167 AKAKSTDQGSAENGGELGWFGQSQMVK-PFADAAFAL-KKGEITAKPVKSNFGYHVILKE 224 Query: 355 NIKPSFTVSFQEVKKDIANQMRITK 379 + K + TV EVK I +++ K Sbjct: 225 DSKAAGTVGLNEVKPQIEGNLKMEK 249 >gi|325479565|gb|EGC82661.1| putative peptidylprolyl isomerase PrsA2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 354 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 9/131 (6%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +++DE++ +E NK+++ + ++ +++ A++ L G+ F LA+E K Sbjct: 166 VTDDEIKKYFEDNKDEFAKVD---ASHILVEDEQTANDIKARLDNGEDFASLAKEYSKDT 222 Query: 308 SDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + +LG+F+K + D+ FS+ K+G+ + + FGY I V++IK SF S Sbjct: 223 ASAQNGGALGAFAKGQMV-KEFEDAAFSM-KEGEISAPVKSQFGYHIIKVNSIKDSFEDS 280 Query: 364 FQEVKKDIANQ 374 +E+ K I +Q Sbjct: 281 KEEITKKIKDQ 291 >gi|254457621|ref|ZP_05071049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD 1] gi|207086413|gb|EDZ63697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD 1] Length = 275 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 13/145 (8%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGK----KFIQ 298 K+E+S+ EL+ Y+KNK+++ E ++ ++EA +SLK KG+ KFI+ Sbjct: 115 KVEVSDKELKNYYDKNKDEFNEKETVHARHILVKTEEEAKNIVKSLKSLKGEALKAKFIE 174 Query: 299 LAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+ + S LG F++ + +P+ + D +F + K G + + FGY + ++ Sbjct: 175 EAKAKSTGPSGPKGGDLGYFAQGQMVPEFN--DKVFGM-KVGTVSEPVKTQFGYHVIYLE 231 Query: 355 NIKPSFTVSFQEVKKDIANQMRITK 379 + K T++F EVK I ++++ K Sbjct: 232 DKKAKKTLAFTEVKSFIEQRLKMEK 256 >gi|261839760|gb|ACX99525.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 52] Length = 487 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|108563383|ref|YP_627699.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1] gi|107837156|gb|ABF85025.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1] Length = 487 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/309 (21%), Positives = 137/309 (44%), Gaps = 28/309 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287 FD ++ ++ EL+ Y KNK Y E ++V++ V QK ++A Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 288 QS---LKKG 293 +S LKKG Sbjct: 289 RSYIALKKG 297 >gi|308063803|gb|ADO05690.1| conserved hypothetical secreted protein [Helicobacter pylori Sat464] Length = 487 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261 >gi|315635801|ref|ZP_07891063.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] gi|315479780|gb|EFU70451.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] Length = 269 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 22/156 (14%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQLA 300 KI+++ + + YEKNKEK+ PE ++ + EA + L K +KF +L+ Sbjct: 108 KIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKASNKVEKFKELS 167 Query: 301 EEQGKSLSDIS------LGSFS-KEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIA 351 + KSL S LG F+ ++ +P+ ++ +LA KG + TPV FGY + Sbjct: 168 K---KSLDTASAKNGGALGRFAVEQMVPE--FGSAVKALA-KGTYSKTPV-KTQFGYHVI 220 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKE 386 ++ + PS T ++ EV+K+I NQ+ I A ++K+KE Sbjct: 221 YLKDKFPSKTFAYTEVEKNI-NQVLIGNALNKKIKE 255 >gi|308062290|gb|ADO04178.1| conserved hypothetical secreted protein [Helicobacter pylori Cuz20] Length = 487 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261 >gi|157736637|ref|YP_001489320.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018] gi|157698491|gb|ABV66651.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018] Length = 269 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 22/156 (14%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQLA 300 KI+++ + + YEKNKEK+ PE ++ + EA + L K +KF +L+ Sbjct: 108 KIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKAPNKVEKFKELS 167 Query: 301 EEQGKSLSDIS------LGSFS-KEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIA 351 + KSL S LG F+ ++ +P+ ++ +LA KG + TPV FGY + Sbjct: 168 K---KSLDTASAKNGGALGRFAVEQMVPE--FGSAVKALA-KGTYSKTPV-KTQFGYHVI 220 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKE 386 ++ + PS T ++ EV+K+I NQ+ I A ++K+KE Sbjct: 221 YLKDKFPSKTFAYTEVEKNI-NQVLIGNALNKKIKE 255 >gi|187931475|ref|YP_001891459.1| hypothetical protein FTM_0703 [Francisella tularensis subsp. mediasiatica FSC147] gi|187712384|gb|ACD30681.1| conserved hypothetical protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 477 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 24/228 (10%) Query: 97 ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 A L Q I+ + AD R + I +P+F KD KFS + +A G Sbjct: 72 AILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFFDKDGKFSAEKLKQVVAYLG-- 129 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF----YFENRSVDYIVLNNRHVP 203 +D ++L++ + + +++++D + Y N+ +DY+ ++ Sbjct: 130 ---GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTKLLNSIYSVNKYIDYLKVSPTDFK 186 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262 + PS L +++ +K+ Y P K ISY + K +IS DE++A Y+ +KE Sbjct: 187 SQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNFVLKNKISEDEIKAYYQAHKEL 246 Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKS 306 K F ++ Q + N + A E F + K+ +L ++ GK+ Sbjct: 247 FKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYTKLEKQFGKA 293 >gi|255321569|ref|ZP_05362727.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277] gi|255301425|gb|EET80684.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277] Length = 270 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 15/146 (10%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 I++S E+ Y KNK ++ P + ++ +K+A++ +LK KG KKF +L Sbjct: 107 IKVSEGEISDFYNKNKAEFAVPAQVRAKHILVATEKDANDIIAALKGLKGDELVKKFEEL 166 Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHV 353 A+ +QG + + LG F + + AD+ F+L KKG+ T PV +FGY + Sbjct: 167 AKSKSTDQGSAANGGELGWFGQSQMVK-PFADAAFAL-KKGEVTQKPV-KSNFGYHVILK 223 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK 379 + K + TV EVK I +++ K Sbjct: 224 EDSKAAGTVGLNEVKPQIEGNIKMEK 249 >gi|237752705|ref|ZP_04583185.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376194|gb|EEO26285.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 485 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 67/368 (18%), Positives = 148/368 (40%), Gaps = 33/368 (8%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQK 70 W++ I L F+ WG +S S +S +V G +++ + + + +Q Sbjct: 17 WISAI--AFLGAGFVGWGA----YSFSNTSNAAAVVGDRQITIDRLQREYARLYNVYNQL 70 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 +++E+A+ +G++++ L+ L+S A + + D+GL + + +F + Sbjct: 71 FNGNLDNEQAKKLGIEEQALNTLISRALMLNYAHDVGLRISQEEIIQTLTAMDIFQN-NG 129 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 KF ++ LA + K++ + + + + + + P L + F Sbjct: 130 KFDETIYKRLLADNQMRPKDFEEELGEGILLQKLDALLEIPLTP--LEIQTISEAVFSED 187 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + VLN+ + +P+ + +++E+ KD Y+ Y + V K I + N Sbjct: 188 HLKIQVLNDSEIT--FNPTEEEIKKYWEENKDIYQTQR----GYEVLKVSVKSDSIPVDN 241 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-------KKFIQLAEEQ 303 + L+ YE K ++ + + P K D+ K K++I L + + Sbjct: 242 ETLKKHYEDFKNQFLDENGQ-----LLPFDKAKDKVIAHYKSSQAEKESLKEYISLRKGE 296 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362 K + + Y D + + ++ P+ + G F + + I PS Sbjct: 297 NKKAESLVIYEGDSNY--DTEFLNLLSQAKEQETLKPIKVKGEF--ITIKIQKIIPSEPK 352 Query: 363 SFQEVKKD 370 S++ K+D Sbjct: 353 SYEAAKQD 360 >gi|315586916|gb|ADU41297.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A] Length = 517 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 89 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 90 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 149 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 150 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 205 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 262 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 291 >gi|317050625|ref|YP_004111741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum indicum S5] gi|316945709|gb|ADU65185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum indicum S5] Length = 280 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + + +S +L+ YE+NK ++ + ++ ++++A E + + G+ F QLA E Sbjct: 116 RNVSVSEQDLKEFYERNKARFVTQATVAASHILLEDEQKAREVLRRARAGENFGQLAREH 175 Query: 304 ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 G + + +G F + D+ F+ A+ G ++ FGY I V PS Sbjct: 176 SLDPGSARQEGFIGEFYRGQGLVKEFEDAAFA-AEVGVHPELVRTEFGYHIIKVHEKNPS 234 Query: 360 FTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSM 401 TVS E + R+T+ A EK + RL + L L S+ Sbjct: 235 RTVSLDEARD------RVTEIIAEEKQNQALMRLIQELELRYSV 272 >gi|326330421|ref|ZP_08196729.1| LigA [Nocardioidaceae bacterium Broad-1] gi|325951696|gb|EGD43728.1| LigA [Nocardioidaceae bacterium Broad-1] Length = 345 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---------EEQGKSL 307 YE + +++ +PE R + +V K+A Q +KG+ F LA +QG +L Sbjct: 181 YEAHPDRFMTPEGRELRNIVVRTDKDAQAVVQRARKGEDFAALARANSLDDATRDQGGAL 240 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + S + +Y A + F F PV FG+ + V I P +F +V Sbjct: 241 GVVPASSLAGDY------AKAAFGARSGAVFGPV-RTQFGWNVGQVVRIVPGKEPTFDQV 293 Query: 368 KKDIANQMRITKASE 382 + + +R +A E Sbjct: 294 EDQALDVVRSERALE 308 >gi|313888943|ref|ZP_07822603.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845116|gb|EFR32517.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 249 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 15/144 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA------ 300 E+ +++++ YE+NK+ + E ++ + +A E ++ +K G F +LA Sbjct: 94 EVKDEDIKKFYEENKDAFKQGESADASHILVEEEDKAREIYEKIKNGGDFEELAKEYSTC 153 Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 +E+G +L + G KE+ D++F + G T + FGY I ++ Sbjct: 154 PSKEKGGNLGTFTKGQMVKEF------EDAVFE-NEVGTITEPVKTQFGYHIIKINQKND 206 Query: 359 SFTVSFQEVKKDIANQMRITKASE 382 + +SF EVK I Q+R K E Sbjct: 207 ARELSFDEVKDRIVEQVRRQKEQE 230 >gi|225874673|ref|YP_002756132.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium capsulatum ATCC 51196] gi|225793602|gb|ACO33692.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium capsulatum ATCC 51196] Length = 588 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 27/148 (18%) Query: 246 IEISNDELQAEYEKNKEKYFSP-EIRTVEQLV-FPN----------QKEADEAFQSLKKG 293 I IS DE+Q Y+++K+++ P E+R E L+ PN +K+AD LK G Sbjct: 186 IRISPDEIQKYYDQHKKEFDRPEEVRLSEILIPTPNPDDAAQVAEAKKKADGIEAQLKAG 245 Query: 294 KKFIQLAEE--------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F +LA+ QG L D G + E L ++ F L KKG FT I Sbjct: 246 GDFAKLAKSDSTGPTAPQGGDLGDFQKGQLAPE------LENATFPL-KKGQFTEPIQTK 298 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 G++I V++ + + +V+ I N Sbjct: 299 QGWIILEVTHHQDAGLAPMNQVETQIEN 326 >gi|210135166|ref|YP_002301605.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12] gi|210133134|gb|ACJ08125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12] Length = 487 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|289423524|ref|ZP_06425325.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L] gi|289156026|gb|EFD04690.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L] Length = 252 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 8/142 (5%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQG 304 +E+S++E YE+NK ++ SPE+ + + ++ + +A E + KK F A E Sbjct: 93 VEVSDEEKLNYYEENKAQFVSPEMVSAKHILVDEEDQAKEIKTKIDKKEMSFEDAAVEYS 152 Query: 305 KSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 K S++ LG F K + +P+ ++ F+L + G + + FGY I V + K Sbjct: 153 KCPSNMKGGDLGEFGKGQMVPE--FEEAAFAL-EVGKVSEPVKSQFGYHIIKVESHKEEG 209 Query: 361 TVSFQEVKKDIANQMRITKASE 382 + F++VK ++AN + K +E Sbjct: 210 QLEFEDVKDEVANAVAYKKQNE 231 >gi|119476198|ref|ZP_01616550.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma proteobacterium HTCC2143] gi|119450825|gb|EAW32059.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma proteobacterium HTCC2143] Length = 640 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 69/329 (20%), Positives = 134/329 (40%), Gaps = 25/329 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ S+ +AK + ++ + F ++G+ D+L +G + V +V ++ + Sbjct: 15 MLQNIRENSQGLIAKFIIGLIILTFALFGI-DSLVGNNGPAVVAAVNGDEISLAELEQGV 73 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E + +G + L +LD L+ L Q D + + I Sbjct: 74 SLERRRLLNYMGENADPSLLDDQRLRGPVLDRLIQQKLLLQAAADASVGVSDAALDQTII 133 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL-- 178 F +D KFS + + S L G + Y +++S+ V G+ S+ + Sbjct: 134 AMEQFQ-EDGKFSPERYQSILRGSGYSTA----FYKQLMSQDLTVAQLNSGISGSDFVIS 188 Query: 179 --LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + + + RS Y +L V A S + Q + D Y++ E + Y+ Sbjct: 189 NELSEVSKIVGQQRSFRYFILPREKVAAQVIISEEEIQQHYNDNIDKYQSEEQVMLEYVE 248 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKKGK 294 + K +E D+++ EY + + E R V ++ + ++A EA Sbjct: 249 VKTADFFKPVEA--DDIEREYALEIAAFEADEERRVSHILIEITDDRDASEAR------- 299 Query: 295 KFIQLAEEQGKSLS-DISLGSFSKEYIPD 322 QLAE+ + L+ D + ++E+ D Sbjct: 300 ---QLAEQLAEKLTGDTDFATIAREFSED 325 >gi|261838345|gb|ACX98111.1| pedidyl-prolyl cis-trans isomerase D [Helicobacter pylori 51] Length = 487 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIKKTSVFQ-KDGIFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNKEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|332678352|gb|AEE87481.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida Fx1] Length = 477 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 38/310 (12%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64 K TW+ I + +FV I G++ F+ GSS V VG ++ F + Q Sbjct: 10 KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-QQYAQSA 64 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 QK + S +D+ ++ LV D + + L++ I +P+ Sbjct: 65 TTEEQKRAIL-------SQMIDQYLI--LVDAQRHDIVVSKLALQS-------AIFTNPM 108 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F KD KFS + +A G +D ++L++ + + ++++ D + Sbjct: 109 FFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 163 Query: 185 F----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 164 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 223 Query: 241 EKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KK 295 K +IS DE++A Y+ +KE K F ++ Q + N + A E F + K Sbjct: 224 NFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGK 305 + +L ++ GK Sbjct: 283 YTKLEKQFGK 292 >gi|257066459|ref|YP_003152715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] gi|256798339|gb|ACV28994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] Length = 359 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 9/132 (6%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 E++ DE++ +E NK+++ + ++ +++ A E + + G+ F +LAEE Sbjct: 165 EVTEDEIKKYFEDNKDEFVKVD---ASHILVQDEETAKEVKEKIDNGEDFAKLAEEYSTD 221 Query: 307 LSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + ++G+FSK + D+ FS+ K+G+ + + FGY I V+ I SF Sbjct: 222 TASAKNGGAVGAFSKGQMV-KEFEDAAFSM-KEGEVSDPVKSQFGYHIIKVNKITDSFED 279 Query: 363 SFQEVKKDIANQ 374 S +E+ K I +Q Sbjct: 280 SKEEITKKIKDQ 291 >gi|213420304|ref|ZP_03353370.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 205 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 90/198 (45%), Gaps = 11/198 (5%) Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 +V I +P F D KF ++ + + + + G+ D YT+ L + G+ Sbjct: 11 QVKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVA 65 Query: 174 PSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 ++ +L D+ + R V V++ + A ++ ++ ++++ K + PE Sbjct: 66 GTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQ 125 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 R+SYI D + + S+ ++QA Y+++ +++ PE + + +A + Sbjct: 126 FRVSYIKLDAATMQAPV--SDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDA 183 Query: 290 LKKGKKFIQLAEEQGKSL 307 L KG+ F LA+E+ + Sbjct: 184 LNKGEDFATLAKEKSTDI 201 >gi|224436614|ref|ZP_03657623.1| hypothetical protein HcinC1_01640 [Helicobacter cinaedi CCUG 18818] gi|313143113|ref|ZP_07805306.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128144|gb|EFR45761.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 492 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 73/361 (20%), Positives = 146/361 (40%), Gaps = 25/361 (6%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVS 95 S + V VG + + F + + L SQ + G +++ +A+ G+ + L L+ Sbjct: 34 SSNDKVARVGDIDIHLAEFQREYARILNEFSQISQFGGMLDEAQAKQFGIPQMALQRLIQ 93 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 + D+GL V EI + ++ +FS +V+ L +G++ E+ + Sbjct: 94 QVQILNLANDLGLVVSDKEVGEEIVNAKVYVDDKGEFSQEVYRKALKEQGMSPSEFEEMV 153 Query: 156 TKMLSRTDVVGMF----VGGMRP---SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 K+L+ + + VG M P S + + + V+ + ++ ++ D Sbjct: 154 RKILTTQKLFSVMNITQVGPMLPISSSEMAALEMANAVRDRLRVEILPMDKVNIEIEDDE 213 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 L ++EK +N+++P +I YIL + ++++L Y+ K Y Sbjct: 214 ----LKAFWEKNAENWKSPMEFKIEYILVPFASQNP----TDEDLTKHYQDFKSDYLDEN 265 Query: 269 IRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-V 323 L F KE + Q+ K+ + + + K +SL + ++ + V Sbjct: 266 GNL---LSFEESKEKLIKDVQKIQAESVAKREYRDLKNKSKKGEILSLKENERFFVKNGV 322 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 L +A+ G I G+V + + KPS SF+E K + +K EK Sbjct: 323 DLVIEDMKVAQVGQVLKPIEVDKGFVTLRILDKKPSVQKSFEEAKAEAKVLFESSKKREK 382 Query: 384 V 384 + Sbjct: 383 L 383 >gi|90021259|ref|YP_527086.1| peptidase M20D, amidohydrolase [Saccharophagus degradans 2-40] gi|89950859|gb|ABD80874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus degradans 2-40] Length = 621 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 67/341 (19%), Positives = 142/341 (41%), Gaps = 36/341 (10%) Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ + + PE + YI V E K I + +++A+YE+ K + + + Sbjct: 214 YYQANQQEFSVPEKVSVDYIEISVAEIAKTIAVDEADIKAQYEQEKADFVESSEYEIAHI 273 Query: 276 VFPNQKEA----DEAFQSLKKGKKFIQLAE---------EQGKSLSDISLGSFSKEYIPD 322 + + E+ +E L G+ F LAE E G SL ++ G F +E+ Sbjct: 274 LIADGDESASKIEEVQTQLAAGEAFETLAETYSDDFGSRETGGSLGVLTTGIFPEEF--- 330 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++++L ++G+ + + G V++ K S++E K +I ++ +A Sbjct: 331 ---EQAVYAL-EEGEVSEPVTTDAGTHFIKVTSKKVEALASYEERKPEIKKAIQNLRAES 386 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD--FAGKDVKGKEVAAIPYKEQLL 440 + Y LEE + + + + PL + F K +V + E +L Sbjct: 387 FYVDQYAELEELTFNAGDLTVAADQLGLTVKQSPLFERNFGNGVAKEVKVRNAAFSEDVL 446 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 G++ P+ + + + M ++ + P LE V + +++ + A+ V Sbjct: 447 LS--GRNSPV-----IEISNSKAMVLRKRTHNPEHIAALELVSSQIQQKLQ----AQAVQ 495 Query: 501 SKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQINRMD 538 +K +L E GK+ +++ ++LG + + RMD Sbjct: 496 AKLAELAKNIQSEIAAGKSPKEVAESLGYDIAEHELVKRMD 536 >gi|188527796|ref|YP_001910483.1| conserved hypothetical secreted protein [Helicobacter pylori Shi470] gi|188144036|gb|ACD48453.1| conserved hypothetical secreted protein [Helicobacter pylori Shi470] Length = 517 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 89 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 90 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 149 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 150 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 205 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 262 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 291 >gi|317177768|dbj|BAJ55557.1| hypothetical protein HPF16_0960 [Helicobacter pylori F16] Length = 487 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|325981462|ref|YP_004293864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] gi|325530981|gb|ADZ25702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] Length = 264 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 10/138 (7%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++S+D L+ EY+ + + E + ++ N+ EA + SLKKG F ++AEE KS Sbjct: 115 QVSDDTLRKEYDVLRVQMGDKEYKA-RHILVENENEARDIIASLKKGGNFAKIAEE--KS 171 Query: 307 LSDISLGSFSK-EYIPDVS----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + D S + + + P + ++++ L+K G + SFG+ + + +I+P Sbjct: 172 IDDGSKENGGELNWSPPAAYVRPFSEALVKLSKGGMTEQPVQTSFGWHVIQLMDIRPMEV 231 Query: 362 VSFQEVKKDIANQMRITK 379 F+EVK++I Q R+ + Sbjct: 232 PPFEEVKQNI--QQRVLQ 247 >gi|310658175|ref|YP_003935896.1| ppic-type peptidyl-prolyl cis-trans isomerase [Clostridium sticklandii DSM 519] gi|308824953|emb|CBH20991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium sticklandii] Length = 249 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 16/175 (9%) Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 ++A FEK K+N+ +Y + I + ++++EL+A Y +NKE + SP+ Sbjct: 66 NDAKFQSEFEKLKENF-VTQYSIQNLI--------NSVSVTHEELEAYYNENKEGFISPQ 116 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI---SLGSFSK-EYIPDVS 324 ++ + A+E L +G+ F LA+E S LG F + + +P+ Sbjct: 117 KVQASHILVSDVSLAEEVKGKLAQGESFEALAKEYSSCPSKERGGDLGMFGEGQMVPE-- 174 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 ++ F +A G+ + + FG+ I V++ + S +SF+EV+ ++ M K Sbjct: 175 FEEAAFKMA-VGEISEPVETQFGFHIIKVTDKQESGLLSFEEVRSNLLRNMMAEK 228 >gi|217033935|ref|ZP_03439358.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10] gi|216943568|gb|EEC23016.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10] Length = 487 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SGSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|222053408|ref|YP_002535770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] gi|221562697|gb|ACM18669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] Length = 296 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 25/186 (13%) Query: 225 RAPEYK-RISYIL--FDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 R PE K ++SYI+ F E +K+ E+ + EL+ Y+++++ + PE V + Sbjct: 87 RKPEVKEQLSYIIDQFLGQEYLRKVVTANVEVPDAELKKYYQEHEKDFVVPERVKVRHIY 146 Query: 277 FPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYI 320 F K+A ++ + LKKG F +LA E + + LG + Sbjct: 147 FAAAKDATAEVKAQARAKAEKIAEQLKKGGDFAKLAGENSEDTESAANGGDLGYLTPGKT 206 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + FSL K G+ +PV+ FGY I V + T +F+E K I++ ++ Sbjct: 207 NSEEFEKAAFSL-KAGEVSPVVETPFGYHIIKVDERQEKRTATFEETKDYISSTLKAQLE 265 Query: 381 SEKVKE 386 +K +E Sbjct: 266 EKKARE 271 >gi|217032656|ref|ZP_03438143.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128] gi|298736064|ref|YP_003728589.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8] gi|216945666|gb|EEC24294.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128] gi|298355253|emb|CBI66125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8] Length = 487 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|118497644|ref|YP_898694.1| hypothetical protein FTN_1053 [Francisella tularensis subsp. novicida U112] gi|195536345|ref|ZP_03079352.1| numod1 domain family protein [Francisella tularensis subsp. novicida FTE] gi|118423550|gb|ABK89940.1| outer membrane protein of unknown function [Francisella novicida U112] gi|194372822|gb|EDX27533.1| numod1 domain family protein [Francisella tularensis subsp. novicida FTE] Length = 477 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 24/228 (10%) Query: 97 ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGI 146 A L Q I+ + AD R + I +P+F KD KFS + +A G+ Sbjct: 72 AILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFFDKDGKFSAEKLKQVVAYLGGM 131 Query: 147 NEKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 ++ E I + ++ +T +V F+ + LL Y N+ +DY+ ++ Sbjct: 132 DKLEQILAKNIQATIIPKT-IVDTFIVTDYDTKLL----NSIYSVNKYIDYLKVSPADFK 186 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262 + PS L +++ +K+ Y P K ISY + K +IS DE++A Y+ +KE Sbjct: 187 SQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNFVPKNKISEDEIKAYYQAHKEL 246 Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKS 306 K F ++ Q + N + A E F + K+ +L ++ GK+ Sbjct: 247 FKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYTKLEKQFGKA 293 >gi|317012785|gb|ADU83393.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori Lithuania75] Length = 487 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 56/274 (20%), Positives = 123/274 (44%), Gaps = 19/274 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYF---ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 L+Q+ + ++R +D ++LN V + + +++E +K +++ P + Sbjct: 176 -LEQSSLSLWAKLQDR-LDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRS 231 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + FD ++ ++ EL+ Y KNK Y E Sbjct: 232 LYFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|332673819|gb|AEE70636.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 83] Length = 487 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261 >gi|308183127|ref|YP_003927254.1| conserved hypothetical secreted protein [Helicobacter pylori PeCan4] gi|308065312|gb|ADO07204.1| conserved hypothetical secreted protein [Helicobacter pylori PeCan4] Length = 487 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 121/273 (44%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F+ +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFNEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPISFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKE 261 >gi|307637665|gb|ADN80115.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908] gi|325996265|gb|ADZ51670.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018] gi|325997854|gb|ADZ50062.1| putative peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 2017] Length = 487 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 137/309 (44%), Gaps = 28/309 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E ++ +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYENHRKDFKKPTSFKTHSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287 FD ++ ++ EL+ Y KNK Y E ++V++ V QK ++A Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 288 QS---LKKG 293 +S LKKG Sbjct: 289 RSYIALKKG 297 >gi|134302065|ref|YP_001122034.1| hypothetical protein FTW_1101 [Francisella tularensis subsp. tularensis WY96-3418] gi|134049842|gb|ABO46913.1| hypothetical protein FTW_1101 [Francisella tularensis subsp. tularensis WY96-3418] Length = 476 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 130/309 (42%), Gaps = 35/309 (11%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K TW+ I + +FV I G++ ++ + V VG ++ F + Q Sbjct: 10 KGPFTWIVVISISFIFV---ISGMTFFFTNIGSRAYVAKVGDNEISSQQF-QQYAQSATT 65 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 QK + S +D+ ++ L D + + L++ I +P+F Sbjct: 66 EEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPMFF 109 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF- 185 KD KFS + +A G +D ++L++ + + ++++ D + Sbjct: 110 DKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTKLL 164 Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 165 NSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNF 224 Query: 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFI 297 K +IS DE++A Y+ +KE K F ++ Q + N + A E F + K+ Sbjct: 225 VLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYT 283 Query: 298 QLAEEQGKS 306 +L ++ GK+ Sbjct: 284 KLEKQFGKA 292 >gi|294340130|emb|CAZ88501.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas sp. 3As] Length = 262 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 81/158 (51%), Gaps = 13/158 (8%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 +K I++ +++AEY+K + + S E + + ++ P++KEA + LKKG KF +LA++ Sbjct: 109 QKHPITDAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSELAKKY 167 Query: 304 GKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIK 357 K + G S Y+P A ++ +L K G +T + FG+ + + + Sbjct: 168 SKDTGSAANGGDLGWSTPNNYVP--PFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDATR 224 Query: 358 PSFTVSFQEVKKDIANQMR---ITKASEKVKEDYKRLE 392 P+ + ++K I +++ +TK ++++ K E Sbjct: 225 PAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAKITE 262 >gi|254373010|ref|ZP_04988499.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570737|gb|EDN36391.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 477 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 38/311 (12%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64 K TW+ I + +FV I G++ F+ GSS V VG ++ F+ + Q Sbjct: 10 KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQFL-QYAQSA 64 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 QK + S +D+ ++ L D + + L++ I +P+ Sbjct: 65 TTEEQKRAIL-------SQMIDQYLI--LADAQRHDIVVSKLALQS-------AIFTNPM 108 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F KD KFS + +A G +D ++L++ + + ++++ D + Sbjct: 109 FFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 163 Query: 185 F----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 164 LLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 223 Query: 241 EKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KK 295 K +IS DE++A Y+ +KE K F ++ Q + N + A E F + K Sbjct: 224 NFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKS 306 + +L ++ GK+ Sbjct: 283 YTKLEKQFGKA 293 >gi|313672612|ref|YP_004050723.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] gi|312939368|gb|ADR18560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] Length = 313 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSLKKGK 294 K I+I+ E + YEKNK+ + PE+ ++ N K+A D ++ LK GK Sbjct: 144 KDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSKIDSIYKELKSGK 203 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA---KKGDFTPVIHGSFGYVIA 351 F +LA++ + S + G + P ++ ++A G F+ +GY I Sbjct: 204 SFEELAKKYSQDGSAANGGDLG--FFPRGAMVKEFENVAFSTPAGKFSEPFKTQYGYHIV 261 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITK 379 V+ +P+ T +++EV I ++R+ K Sbjct: 262 KVTEKRPAKTYTYEEVSNHIEGKLRMDK 289 >gi|317009631|gb|ADU80211.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori India7] Length = 487 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTRFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|317182276|dbj|BAJ60060.1| hypothetical protein HPF57_0986 [Helicobacter pylori F57] Length = 487 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 54/273 (19%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN + + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDIKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|296272150|ref|YP_003654781.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter nitrofigilis DSM 7299] gi|296096325|gb|ADG92275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter nitrofigilis DSM 7299] Length = 269 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 18/159 (11%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKGKKFIQL 299 K++ ++ E ++ Y+KNKEK+ +P+ ++ +KEA++ L KKG F +L Sbjct: 108 KVKATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKLNIAKNKKG-SFEEL 166 Query: 300 AEEQGKSLSDIS---LGSF-SKEYIPDVSLADSIFSLA-KKGDFT--PVIHGSFGYVIAH 352 A++ + LG F +K+ +P+ S A +LA KKG++T PV FGY + + Sbjct: 167 AKKFSIGPTKTKGGYLGKFQAKQMVPEFSKA----ALALKKGEYTKKPV-KTQFGYHVIY 221 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + S + F +VK +IA + K + +KE+ ++L Sbjct: 222 LENKEVSQILPFDKVKANIAKMIVQEKYGKMIKEEVEKL 260 >gi|115314710|ref|YP_763433.1| hypothetical protein FTH_0881 [Francisella tularensis subsp. holarctica OSU18] gi|156502314|ref|YP_001428379.1| hypothetical protein FTA_0947 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254369242|ref|ZP_04985254.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|290953593|ref|ZP_06558214.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis subsp. holarctica URFT1] gi|295313094|ref|ZP_06803784.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis subsp. holarctica URFT1] gi|115129609|gb|ABI82796.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|156252917|gb|ABU61423.1| hypothetical protein FTA_0947 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122192|gb|EDO66332.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 477 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 50/271 (18%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64 K TW+ I + +FV I G++ F+ GSS V VG ++ F Sbjct: 10 KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-------- 57 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR---------V 115 Q + E+ R++ L Q I+ + AD R + Sbjct: 58 ---QQYVQSATTEEQKRAI---------------LSQMIDQYLILADAQRHDIVVSKLAL 99 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P+F KD KFS + +A G +D ++L++ + + + Sbjct: 100 QSAIFTNPMFFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDT 154 Query: 176 NLLLDQAKRF----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +++ D + Y N+ +DY+ ++ + PS L +++ +K+ Y P K Sbjct: 155 SIVTDYDTKLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKT 214 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 ISY + K +IS DE++A Y+ +KE Sbjct: 215 ISYFIITKDNFVPKNKISEDEIKAYYQAHKE 245 >gi|320106474|ref|YP_004182064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] gi|319924995|gb|ADV82070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] Length = 275 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVF----PN-----QKEADEAFQSLKKGKKFIQL 299 S +E++ YE+++ ++ PE V ++ P Q + +A L GK F ++ Sbjct: 116 SREEVERYYEQHRVEFHQPERIEVAHIICNIDRPEDRAVAQSKMQQAEMELNTGKPFQKV 175 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 AE+ + LG ++ + + + +F+L K+ + + + FG IA V NIKP+ Sbjct: 176 AEKYSDCGGKVPLGWITRGVMVE-EFDEVVFTL-KRNERSEIFSSRFGLHIATVLNIKPA 233 Query: 360 FTVSFQEVKKDIANQM 375 QEVK IA +M Sbjct: 234 GYEPLQEVKLSIAKRM 249 >gi|126641683|ref|YP_001084667.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter baumannii ATCC 17978] gi|126387567|gb|ABO12065.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter baumannii ATCC 17978] Length = 286 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 42/295 (14%) Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 +VS L Q E +G+ ++ +A+ P ++ +FS ++ + L G+ + I Sbjct: 1 MVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLI 59 Query: 153 -----DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA- 206 DH KML+ T F S + L Q E R++ H+ +I Sbjct: 60 ASLRQDHALKMLTST-----FADYSLVSKVDLMQIANLQTEQRTL--------HLASIKL 106 Query: 207 DP-------SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 DP SN T ++ K+++ ++ P + Y++ K ++ EL+ Y K Sbjct: 107 DPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAK 166 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDIS 311 E R V+ ++ D A Q L K G F Q A + + + + Sbjct: 167 FVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKT 226 Query: 312 LGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHV---SNIKPSF 360 G + Y P V + ++ SL K G + + +GY I +N PSF Sbjct: 227 KGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIEAETQANQIPSF 280 >gi|118581987|ref|YP_903237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] gi|118504697|gb|ABL01180.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] Length = 300 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 KR+ F + E +IS+ +L+ Y++N +K+ + E ++ +KEA E Sbjct: 110 KRLIVEAFLKKKVETDAQISDADLKKFYDQNIDKFKAGEQIRASHILVKTEKEAKEILAQ 169 Query: 290 LKKGKKFIQLAEEQG---KSLSDISLGSFSK-EYIPDVSLADSIFSLA-KKGDFTPVIHG 344 LK G F +LA + S LG F K +P A +LA K+G + V+ Sbjct: 170 LKGGAAFEELARKHSVDSSSAKGGDLGWFGKGAMVPAFERA----ALALKEGQVSDVVKS 225 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKR 390 FG+ I ++ +P+ T F EVK I + +K E K+K++ K+ Sbjct: 226 DFGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQQEIFQKIKDELKK 274 >gi|295111179|emb|CBL27929.1| Parvulin-like peptidyl-prolyl isomerase [Synergistetes bacterium SGP1] Length = 303 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 25/165 (15%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQL 299 K ++ + +E Q Y+++K+++ PE I L+ + AD + LK G F Sbjct: 124 KDVKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIARVQADLKAGASF--- 180 Query: 300 AEEQGKSLSDIS-------LGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 +E+ K LS LG F+KE +P+ S D+ F+L + GD + + FG+ I Sbjct: 181 -DEEAKKLSLCPSAPQGGDLGEFTKEQMVPEFS--DAAFALKEPGDVSEPVKSPFGWHII 237 Query: 352 HVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVKEDYK 389 + P+ + F +VK I Q RI E++K+ YK Sbjct: 238 RLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEELKKAYK 282 >gi|212696251|ref|ZP_03304379.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM 7454] gi|212676880|gb|EEB36487.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM 7454] Length = 248 Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 K I++S+DEL+ Y+ NKE P+ ++ ++ EA++ + +K G +F + A++ Sbjct: 91 KDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEKAADKY 150 Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +G L + G+ KE+ + D +G+ + + FGY I + + Sbjct: 151 STDKASKGGDLGEFPQGAMVKEFEEALDKLD-------EGEISNPVKSQFGYHIIKLDHT 203 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + F E+K I + + + K EK E +++E Sbjct: 204 HNAHLPEFNEIKDRIHDTLLMIKRQEKYLEKTNKIKE 240 >gi|157164251|ref|YP_001467105.1| holo-[acyl-carrier-protein] synthase [Campylobacter concisus 13826] gi|112801387|gb|EAT98731.1| foldase protein PrsA [Campylobacter concisus 13826] Length = 272 Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 I++S+ +L+ Y KNK P ++ ++K A++ LK KG KKF +L Sbjct: 109 IKVSDSDLRDFYNKNKASMNQPAQARARHILVEDEKTANDIIAQLKNLKGEVLTKKFAEL 168 Query: 300 AEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A ++ G + LG F + + AD+ FS+A T + FGY + + Sbjct: 169 ASQKSIDKGSAAHGGELGWFGQSQMVK-PFADAAFSMANGTVSTKPVKTQFGYHVILKED 227 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K + TVSF++ K +I +++ K V++ + L + Sbjct: 228 GKAAGTVSFEQAKPEIEQAVKMEKFQAAVRQKSEALRQ 265 >gi|154148381|ref|YP_001406634.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] gi|153804390|gb|ABS51397.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] Length = 275 Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 15/160 (9%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFI 297 KK+ +S+DE + YE+N + PE + ++ +KEA L K K+F Sbjct: 104 KKVNVSDDEAKKFYEENNASFVIPEQISASHILVKEEKEAKNIISKLSKLKGEKLSKEFA 163 Query: 298 QLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIA 351 ++A E+ G + +LG F K + + ++F L KKG+ T PV FGY I Sbjct: 164 KIASEKSIDNGTKQNGGALGFFQKGQMVE-PFEKAVFGL-KKGELTKQPV-KTQFGYHII 220 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 ++ K + T+ F+ VK I N ++ K +++ E + L Sbjct: 221 LKTDEKKASTLPFESVKNAIINNIKGQKFQKQIDEKAEAL 260 >gi|302187980|ref|ZP_07264653.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae 642] Length = 627 Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust. Identities = 90/420 (21%), Positives = 176/420 (41%), Gaps = 44/420 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + N Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDIS----QNEL 56 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKIL-----DNLVSGATLDQFIEDIGLEADH 112 Q + M +++ ++ + + LD+K+L L+ L Q D Sbjct: 57 SQAVDMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSD 116 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + ++ ++P F D KFS D F + + G + ++ +ML + ++G G+ Sbjct: 117 AALDQQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQF----RQMLGQEMLIGQVRAGV 171 Query: 173 RPSNLLLD-QAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQ-----WFEKYKDNYR 225 S + D Q + F E ++ D+ L +PA D S +T ++++ + Sbjct: 172 AGSAFVTDAQVEAFARLEKQTRDFASLT---LPA--DTSAVKVTDDEVKAHYDEHAKEFM 226 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---- 281 +PE + YI K+++ +++LQA Y+K S + R L+ N K Sbjct: 227 SPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILIEVNDKLNEE 285 Query: 282 ----EADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + +E Q L KG+ F LA+E G S LG ++ + + D + +++++L Sbjct: 286 QAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLG-YAGKGVYDPAFEEALYALN 344 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K PV FG+ + + ++ +F +K + N ++ +K E K+LE+ Sbjct: 345 KDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLED 403 >gi|257458734|ref|ZP_05623857.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257443722|gb|EEV18842.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 485 Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++K ++ + I++ + FV F+ WG D + +GS + VG+ + Sbjct: 1 MIEWMQKHKKSLIPTIWISTIAFVGAGFVGWGAYDMNANRAGS--IARVGQISITNQELN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + +S E+A+++ LD+ +D L+ A F +D+G++A V Sbjct: 59 TKYSELYNRLSAMSDGQFTQEQAKNMHLDQIAVDQLIGEAYFLNFAKDLGIQASDKDVAE 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 + SP F ++ FS +++ + + G+ +KE+ + K+L+ Sbjct: 119 FVVSSPNFQ-ENGAFSKELYDNVVRNSGLTKKEFERNLQKVLT 160 >gi|321313742|ref|YP_004206029.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5] gi|320020016|gb|ADV95002.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5] Length = 297 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I+ISN EL++ Y KNKE Y + + +V +++EA E + LK G F +A E+ Sbjct: 131 RDIDISNKELESFYHKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + + + IP + ++ + P I S GY I + Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEP-IKVSNGYAIIQLKEKL 249 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T SF EVK I Q+ + + +K Sbjct: 250 KARTFSFDEVKDQIRRQIAMDQLGDKA 276 >gi|208434878|ref|YP_002266544.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27] gi|208432807|gb|ACI27678.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27] Length = 505 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 19 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 77 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 78 YRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 137 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 138 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 193 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 194 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 250 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 251 YFDAGLEKTDLK----ELEEYYHKNKVSYLDKE 279 >gi|171060558|ref|YP_001792907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170778003|gb|ACB36142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 336 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 74/324 (22%), Positives = 123/324 (37%), Gaps = 69/324 (21%) Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 I + N RAR L ++ LD L+ L Q +GLEAD V I + Sbjct: 71 IARLQNPARARE--LRREALDRLIGIELLGQQARALGLEADDAAVERAIT-----EARSR 123 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 S +VF R+A EG +E + +H K+LS G R R Sbjct: 124 FRSAEVFAQRIAIEGHDEASHREHTRKLLS----------GER-------------LAQR 160 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 VD V H+ + A + + E +R PE R+ +L + Sbjct: 161 IVDREV----HI------TEADIAAFHEANPALFRRPEQVRVRQLLVAL----------- 199 Query: 251 DELQAEYEKNKEKYFSPEIRT-VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + E + R+ +E L+ + A E+F++L + + G +L Sbjct: 200 -------PADAEPALKAQARSRIEALLV--RARAGESFEALARTHSDAP-TRQWGGALDP 249 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 GS + ++ D+ F+LA G + VI S G+ I + + +V EV++ Sbjct: 250 FGRGSQPR------AIEDAAFALA-PGALSEVIETSAGWQILQLDERIAAVSVPLDEVRE 302 Query: 370 DIANQMRITKASEKVKEDYKRLEE 393 I + + + V+ + RL E Sbjct: 303 RIRRHLHDGRGQQAVEREIARLRE 326 >gi|319654925|ref|ZP_08008999.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2] gi|317393350|gb|EFV74114.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2] Length = 288 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 8/138 (5%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + +S +E+++ YE+N ++ P+ + Q++ ++EA++ + L +G F LA E+ Sbjct: 128 VSVSEEEMKSYYEQNSSQFQVPDTYHISQIIVKTKEEAEQTLKELDEGSSFSVLAMERSI 187 Query: 306 SLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 SLG S E+IP + + + +L K G +T I GY + + Sbjct: 188 DEFTASLGGNAGYVSEDDEHIP-AEVFEQVKTL-KPGKWTKPIKTENGYAVVMLHEHLKG 245 Query: 360 FTVSFQEVKKDIANQMRI 377 SF+EVK I Q+ + Sbjct: 246 ENYSFKEVKSMIRRQIAL 263 >gi|325846640|ref|ZP_08169555.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481398|gb|EGC84439.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 248 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 14/157 (8%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 K I++S+DEL+ Y+ NKE P+ ++ ++ EA++ + +K G +F + A++ Sbjct: 91 KDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEKAADKY 150 Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +G L + G+ KE+ + +G+ + + FGY I + + Sbjct: 151 STDKASKGGDLGEFPQGAMVKEF-------EEALDKLNEGEISKPVKSQFGYHIIKLDHT 203 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + F E+K I + + + K EK E +++E Sbjct: 204 HDAHLPEFDEIKDRIHDTLLMIKRQEKYLEKTNKIKE 240 >gi|296135908|ref|YP_003643150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] gi|295796030|gb|ADG30820.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] Length = 262 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 13/158 (8%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 +K I+ +++AEY+K + + S E + + ++ P++KEA + LKKG KF +LA++ Sbjct: 109 QKHPITEAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSELAKKY 167 Query: 304 GKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIK 357 K + G S Y+P A ++ +L K G +T + FG+ + + + Sbjct: 168 SKDTGSAANGGDLGWSTPNNYVP--PFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDATR 224 Query: 358 PSFTVSFQEVKKDIANQMR---ITKASEKVKEDYKRLE 392 P+ + ++K I +++ +TK ++++ K E Sbjct: 225 PAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAKITE 262 >gi|16077140|ref|NP_387953.1| protein secretion PrsA [Bacillus subtilis subsp. subtilis str. 168] gi|221307882|ref|ZP_03589729.1| hypothetical protein Bsubs1_00365 [Bacillus subtilis subsp. subtilis str. 168] gi|221312204|ref|ZP_03594009.1| hypothetical protein BsubsN3_00365 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317137|ref|ZP_03598431.1| hypothetical protein BsubsJ_00365 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321400|ref|ZP_03602694.1| hypothetical protein BsubsS_00365 [Bacillus subtilis subsp. subtilis str. SMY] gi|586895|sp|P37566|YACD_BACSU RecName: Full=Uncharacterized protein yacD gi|467461|dbj|BAA05307.1| unknown [Bacillus subtilis] gi|2632339|emb|CAB11848.1| putative protein secretion PrsA homolog [Bacillus subtilis subsp. subtilis str. 168] Length = 297 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I+ISN EL++ Y KNKE Y + + +V +++EA E + LK G F +A E+ Sbjct: 131 RDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + + + IP + ++ + P I S GY I + Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEP-IKVSNGYAIIQLKEKL 249 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T SF EVK I Q+ + + +K Sbjct: 250 KARTFSFDEVKDQIRRQIAMDQLGDKA 276 >gi|15645592|ref|NP_207768.1| hypothetical protein HP0977 [Helicobacter pylori 26695] gi|2314119|gb|AAD08023.1| conserved hypothetical secreted protein [Helicobacter pylori 26695] Length = 487 Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 60 YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 261 >gi|227485003|ref|ZP_03915319.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus ATCC 51172] gi|227237000|gb|EEI87015.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus ATCC 51172] Length = 343 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 155 YTKML-SRTDVVGMFVGGMRPSNLLLD--QAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 Y ML SR ++ V M L+ D +A + ++ V+ LN+ + + Sbjct: 67 YGSMLASRQNLKNSIVQMMVQDKLIADDMKANKIEISDKEVNDAFLNSVKQFGGQEQFDK 126 Query: 212 VLTQW---FEKYKDNYRAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKNKEKYFS 266 +L + EK+K+ + +++ H + EK+ ++ +E++ YE NK+K+ Sbjct: 127 MLDDYNMDVEKFKETVKKD-------LMYKKHREWFEKEHPVTEEEIKQYYEDNKDKFAK 179 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPD 322 R ++ ++K A E L KG F LA+E K ++ + LG+FS+ + Sbjct: 180 ---RDASHILVADEKTAKEVKDKLDKGADFAALAKEYSKDTANAANGGELGTFSRGQMV- 235 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 D+ FSL K+G+ + + FGY I V+ I S Sbjct: 236 KEFEDAAFSL-KEGEISGPVKTQFGYHIIKVNKIADSI 272 >gi|328551773|gb|AEB22265.1| hypothetical protein BAMTA208_00365 [Bacillus amyloliquefaciens TA208] gi|328910033|gb|AEB61629.1| putative protein secretion PrsA [Bacillus amyloliquefaciens LL3] Length = 296 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K I+IS+ E+Q+ Y KNKE Y + + +V +++EAD LK G F +A E+ Sbjct: 130 KDIDISDKEMQSFYNKNKELYQFDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAER 189 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + ++E IP + ++ + P I S GY + + Sbjct: 190 STDRYTSQYGGDLGFVTENQENIPPAYITEAKNLKENEWSAEP-IKVSSGYAVIQLKEKL 248 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T S+ EVK I Q+ + + +K Sbjct: 249 KARTFSYNEVKSQIRRQIAMDQLGDKA 275 >gi|308171963|ref|YP_003918668.1| protein secretion PrsA-like protein [Bacillus amyloliquefaciens DSM 7] gi|307604827|emb|CBI41198.1| putative protein secretion PrsA homolog [Bacillus amyloliquefaciens DSM 7] Length = 296 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K I+IS+ E+Q+ Y KNKE Y + + +V +++EAD LK G F +A E+ Sbjct: 130 KDIDISDKEMQSFYNKNKELYQFDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAER 189 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + ++E IP + ++ + P I S GY + + Sbjct: 190 STDRYTSQYGGDLGFVTENQENIPPAYITEAKNLKENEWSAEP-IKVSSGYAVIQLKEKL 248 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T S+ EVK I Q+ + + +K Sbjct: 249 KARTFSYNEVKSQIRRQIAMDQLGDKA 275 >gi|115525459|ref|YP_782370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] gi|115519406|gb|ABJ07390.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] Length = 353 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 17/145 (11%) Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--------FQSLKK-----GKKFI 297 DE+Q Y+ N+ + P + Q+ + K+AD+A + ++K G F Sbjct: 180 DEIQKVYDANRGQLVVPRQYQLSQIFIASPKDADKATEDKARKKLEDIQKKLKAPGADFA 239 Query: 298 QLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A E+ + LGS + + IP++ + LAK G + I G+ I +++ Sbjct: 240 AIAGEESDAKGSADLGSIPENQLIPEIR--SHVVGLAK-GAVSDPIRLDAGWHIVKLTDT 296 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 K S+T + EV+ +A QMR +A+ Sbjct: 297 KASYTRTLPEVRDQLAQQMRKERAA 321 >gi|218961685|ref|YP_001741460.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730342|emb|CAO81254.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 679 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Query: 217 FEKY-KDNYRAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 +EKY +N + KR SY+L EK IEI+++E+ YE+ KE++ +P RT+E Sbjct: 375 YEKYFSENEDYLQAKR-SYVLRRAFEKLVSDTIEITDEEIAERYEREKERFSTPAYRTIE 433 Query: 274 QLVFPNQKEADEAFQSLKKGKK 295 L F N+K+A+ A++ K K Sbjct: 434 VLFFDNKKDANTAWKKYSKAYK 455 >gi|317011211|gb|ADU84958.1| hypothetical protein HPSA_04905 [Helicobacter pylori SouthAfrica7] Length = 487 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 137/309 (44%), Gaps = 28/309 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S++ VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SNSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + E+ +++ L+K L+ L++ A L D+GL A + Sbjct: 60 YRRLKDAYAESIPDFKELTEEQIKAMHLEKSALNILINQALLRNLALDLGLGATKQEIAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQNHYRPKHFEESVEKLLIVQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++L V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287 FD + ++ ++ EL+ Y KNK Y E ++V++ V QK ++A Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 288 QS---LKKG 293 +S LKKG Sbjct: 289 RSYIALKKG 297 >gi|205375588|ref|ZP_03228375.1| protein secretion (post-translocation chaperonin) [Bacillus coahuilensis m4-4] Length = 301 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E +IE++++E+Q ++ NK + E ++ +++ A+E Q L +G F +LA E Sbjct: 125 EDRIEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKLDEGGDFAELAAE 184 Query: 303 QGKSLSDIS----LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S+ S LG F K + +P+ ++ F A+ G T + FGY I V + Sbjct: 185 YSTDTSNASQGGDLGFFGKGQMVPE--FEEAAFG-AEVGSITGPVQTDFGYHIIKVEEKQ 241 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + + ++VK+++ R T +K +++Y Sbjct: 242 EAKEATLEDVKEEV----RETIKQQKQQQEY 268 >gi|189425796|ref|YP_001952973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] gi|189422055|gb|ACD96453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] Length = 335 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 23/169 (13%) Query: 248 ISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA-----------FQSLKKGKK 295 +++ E++ Y+KN E + PE +R L+ + K D + +K G Sbjct: 168 VTDAEMKEFYDKNPETFTQPEQVRASHILITLDAKATDADKKKAKEKIEDLLKQVKAGAD 227 Query: 296 FIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F +LA+E S LG F K + ++ F++ K GD + V+ FGY I Sbjct: 228 FAKLAQENSGCPSSKQGGDLGYFGKGQMVK-PFEETAFAM-KPGDVSGVVETQFGYHIIK 285 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVK---EDYK---RLEEFL 395 ++ K + V+F EVK IA+ ++ K +E + ED K ++E FL Sbjct: 286 LTEKKAAAKVAFDEVKAKIADSLKRKKVTEAINATLEDAKKKAKIEVFL 334 >gi|118474611|ref|YP_891704.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40] gi|118413837|gb|ABK82257.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40] Length = 269 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 17/143 (11%) Query: 248 ISNDELQAE--YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 I DE +A+ YE+NK+K+ P + ++ +KEA + +SL KG KKF ++ Sbjct: 106 IKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAALDKKFSEI 165 Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHV 353 A+E+ +++ LG F + + S + + F L KKG+ T PV FGY + Sbjct: 166 AKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGL-KKGEITNKPV-KSEFGYHVILK 222 Query: 354 SNIKPSFTVSFQEVKKDIANQMR 376 ++K V F + K +I NQM+ Sbjct: 223 EDMKDKSAVGFDKAKANIENQMK 245 >gi|317178673|dbj|BAJ56461.1| hypothetical protein HPF30_0364 [Helicobacter pylori F30] Length = 487 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 54/273 (19%), Positives = 119/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL V Sbjct: 60 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGTTKQEVAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 233 YFDASLEKPDLK----ELEKYYHKNKVSYLDKE 261 >gi|261886000|ref|ZP_06010039.1| foldase protein PrsA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 268 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 17/143 (11%) Query: 248 ISNDELQAE--YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 I DE +A+ YE+NK+K+ P + ++ +KEA + +SL KG KKF ++ Sbjct: 106 IKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAALDKKFSEI 165 Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHV 353 A+E+ +++ LG F + + S + + F L KKG+ T PV FGY + Sbjct: 166 AKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGL-KKGEITNKPV-KSEFGYHVILK 222 Query: 354 SNIKPSFTVSFQEVKKDIANQMR 376 ++K V F + K +I NQM+ Sbjct: 223 EDMKDKSAVGFDKAKANIENQMK 245 >gi|256751661|ref|ZP_05492536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus CCSD1] gi|256749470|gb|EEU62499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus CCSD1] Length = 301 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 28/168 (16%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 LFD E K ++++ +EL+ YE NKE++ E ++ ++K A++ + L KG+ Sbjct: 134 LFD--EYTKDVKVTEEELKKYYEDNKEQF---ETVKASHILVVDEKTAEDIYNRLMKGED 188 Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F LA+E QG L + G E+ +FSL KKG+ + + + Sbjct: 189 FATLAKEYSVDTATKDQGGDLGEFPHGVMVPEF------DQVVFSL-KKGEISKPVKTDY 241 Query: 347 GYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I IKP F EVK I + + K ++ + E Y LE Sbjct: 242 GYHIIKSDGVIIKP-----FDEVKDTIESYLLDDKKNQVIIEKYDALE 284 >gi|258545268|ref|ZP_05705502.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] gi|258519481|gb|EEV88340.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] Length = 610 Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust. Identities = 67/361 (18%), Positives = 149/361 (41%), Gaps = 35/361 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ + + +++ + L G+ F+ G + + +V Q+VP ++ + Sbjct: 25 MLEDIREKKTNRITYLLVIIAGIGMLFIGVP--YFNHGGETNIATVNGQEVPLRAYQEQY 82 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + I Q+ + ++ L ++ + +LV Q +A + R + Sbjct: 83 RD----IQQQQPDLSETD------LKQRAVRSLVERTLFQQ-------QALNSRY--RLP 123 Query: 121 RSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 S L+ +F +D + L GI+ + Y S +N L Sbjct: 124 DSALYRIIKEQFGNDENYQQWLKSRGISAETYQQSVRSDQSIASYYSALQAAGGENNPLY 183 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + + R + + A + +++ L + +E + + Y PE I+Y ++D+ Sbjct: 184 QHYLQSAAQERGYTLYTIPRAPIAAAINVNDSALQKHYEAHGERYATPETVDINYTIYDI 243 Query: 240 HEKEKKIEISNDEL---QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + +S++++ +A E+ +Y + K+ + F + + Sbjct: 244 AD----LPVSDEQIAKARAASERRGGRYLIIDDAKAASDAAAAIKDGRKTFADYWQDIQN 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA E G +++L + K P+ L +++F+LAK GD +P+I +G ++ + NI Sbjct: 300 KTLAGESG----ELALAAKGKGTSPE--LDEALFALAKPGDVSPLIDSEYGKILVELGNI 353 Query: 357 K 357 + Sbjct: 354 E 354 >gi|315927333|gb|EFV06677.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 263 Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 87 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 146 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 147 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 205 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 206 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 239 >gi|57238208|ref|YP_178711.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221] gi|86149798|ref|ZP_01068027.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151529|ref|ZP_01069743.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 260.94] gi|88596967|ref|ZP_01100203.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 84-25] gi|205355446|ref|ZP_03222217.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562247|ref|YP_002344026.1| major antigenic peptide PEB-cell binding factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124114|ref|YP_004066118.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|123141587|sp|Q0PAS1|CBF2_CAMJE RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen peb4A; Flags: Precursor gi|671840|emb|CAA59175.1| cell binding factor 2 [Campylobacter jejuni subsp. jejuni 81-176] gi|57167012|gb|AAW35791.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221] gi|85839616|gb|EAQ56876.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841158|gb|EAQ58406.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 260.94] gi|88190656|gb|EAQ94629.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359953|emb|CAL34742.1| major antigenic peptide PEB-cell binding factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205346680|gb|EDZ33312.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925857|gb|ADC28209.1| major antigenic peptide PEB-cell binding facto [Campylobacter jejuni subsp. jejuni IA3902] gi|315017836|gb|ADT65929.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315058010|gb|ADT72339.1| Cell binding factor 2 precursor [Campylobacter jejuni subsp. jejuni S3] gi|315928817|gb|EFV08084.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 273 Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 97 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249 >gi|241763440|ref|ZP_04761494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] gi|241367382|gb|EER61703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] Length = 247 Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 12/130 (9%) Query: 257 YEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFIQLAEEQ----GKSL 307 Y+ +++ +PE V ++ + +A++ + LK G F QLA+E+ G Sbjct: 83 YKAKPDRFQAPEQVQVRHILIAGTDGGARAQAEKVLEELKAGADFAQLAKERSADTGSGA 142 Query: 308 SDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LG F++ +P+ ++ F+L + GD + ++ FG+ I + +P+ ++E Sbjct: 143 KGGDLGLFARGRMVPEFD--EAAFALKQPGDLSGIVETKFGFHILKLDARRPAGLRPYEE 200 Query: 367 VKKDIANQMR 376 V++++ ++R Sbjct: 201 VREELIKEVR 210 >gi|86153246|ref|ZP_01071450.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612905|ref|YP_001000297.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81-176] gi|167005249|ref|ZP_02271007.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81-176] gi|143955293|sp|A1VYV6|CBF2_CAMJJ RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen peb4A; Flags: Precursor gi|85842972|gb|EAQ60183.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250443|gb|EAQ73401.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81-176] Length = 273 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 97 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249 >gi|283956008|ref|ZP_06373497.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 1336] gi|283792484|gb|EFC31264.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 1336] Length = 273 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++ + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 97 ILVNVYQDKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T I Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPI 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249 >gi|153951254|ref|YP_001398165.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei 269.97] gi|152938700|gb|ABS43441.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei 269.97] Length = 273 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 97 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 157 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249 >gi|332981378|ref|YP_004462819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella australiensis 50-1 BON] gi|332699056|gb|AEE95997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella australiensis 50-1 BON] Length = 350 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 23/162 (14%) Query: 246 IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVF--PNQK-----------------EADE 285 I ++++E++ Y++NK+ F+ PE+ V ++ P K EA++ Sbjct: 168 ITVTDEEVKKYYDENKDTEFTDPEMVKVSHILISIPEDKYSADETTKKTEYDKIKPEAEQ 227 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 K G F +L ++ G +FS+E + + ++ F+L KGD + ++ Sbjct: 228 VLAKAKAGDDFAELVKQYSDDAGTKDQGGTLTFSREDQIEPAFIEASFALKNKGDISGLV 287 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 S+GY I + PS +F+E K++I + + K ++K+ Sbjct: 288 QTSYGYHIIRLEEKIPSKVHTFEEKKQEIHDTLLQQKKNDKI 329 >gi|157414878|ref|YP_001482134.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81116] gi|157385842|gb|ABV52157.1| cell binding factor2 (major antigen PEB4A) [Campylobacter jejuni subsp. jejuni 81116] gi|307747515|gb|ADN90785.1| Cell-binding factor 2 [Campylobacter jejuni subsp. jejuni M1] Length = 273 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 97 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 157 SKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249 >gi|268679964|ref|YP_003304395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum deleyianum DSM 6946] gi|268617995|gb|ACZ12360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum deleyianum DSM 6946] Length = 270 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 12/144 (8%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQL 299 +++ E++ Y+KN +K+ P ++ +++EA A + L K KF++L Sbjct: 108 VKVDAKEVKDYYDKNADKFMQPATVKARHILVKSEEEAKAAIKELSGLSGQKLNDKFVEL 167 Query: 300 AEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSN 355 A + S LG F+ + AD+ F+L KKG++T + FG+ + V + Sbjct: 168 ATTKSTGPSGQGGGDLGWFAANQMVK-PFADAAFAL-KKGEYTKSPVQTQFGFHVILVED 225 Query: 356 IKPSFTVSFQEVKKDIANQMRITK 379 K + SF+ VK I N +++ K Sbjct: 226 TKAAEKASFEMVKPQIENGLKMEK 249 >gi|297545519|ref|YP_003677821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843294|gb|ADH61810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 301 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 24/171 (14%) Query: 233 SYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +Y+L + E K ++I+ +EL+ YE NK+++ E ++ ++K A + + L Sbjct: 127 NYLLINKLFEEYTKDVKITEEELKKYYEDNKDQF---ETVKASHILVSDEKIAQDIYNRL 183 Query: 291 KKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 KG+ F LA+E QG L + + G E+ FSL KKG + Sbjct: 184 MKGEDFATLAKEYSIDTATKDQGGDLGEFARGVMVPEF------EQVAFSL-KKGQISKP 236 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +GY H+ + + SF EVK DI + K ++ + E Y LE Sbjct: 237 VKTDYGY---HIIKSEGATLKSFDEVKGDIEAYLLNDKKNQVITEKYDALE 284 >gi|268315855|ref|YP_003289574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] gi|262333389|gb|ACY47186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] Length = 552 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 23/177 (12%) Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 PA A L +W +Y + E + D L+A Y+ ++E Sbjct: 355 PAFAQARQEALDRWLYRYVRQ-----------------QVESGAAVPEDTLRAFYKAHRE 397 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 + P R V +++ P + EA ++L F +LA + + G + ++ + Sbjct: 398 DFRMPARRAVWEILVPTEAEAQR-IRTLLTATPFEELARHYSRRPGAAATGGYLG-FVAE 455 Query: 323 VSLA---DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 L ++F+ A++G+ + + GYV+ V +P ++F+E + I Q+R Sbjct: 456 AQLGAAGKAVFA-AREGEVLGPLRIADGYVLLKVGAEQPERPMTFEEARPLIERQLR 511 >gi|148925955|ref|ZP_01809642.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844941|gb|EDK22045.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8486] Length = 207 Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 31 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 90 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 91 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 149 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 150 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 183 >gi|78045210|ref|YP_359073.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Carboxydothermus hydrogenoformans Z-2901] gi|77997325|gb|ABB16224.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Carboxydothermus hydrogenoformans Z-2901] Length = 337 Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 35/176 (19%) Query: 209 SNAVLTQWFEKYKD--NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 S + +++EK+K+ +++ PE +++ +IL V++ N + + N Sbjct: 155 SEQEVKEYYEKHKNEPDFQTPEQRQVRHILIAVND-------GNAQNNPHFNIN------ 201 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--------DISLGSFSKE 318 V++ +K A+E + +K GK F LA+E+ S G KE Sbjct: 202 -----VKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKENGGQYTFSRGEMVKE 256 Query: 319 YIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + D+ F+L K GD T + +FGY I + I P+ +++EVK+ + N Sbjct: 257 F------EDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVKEQLKN 306 >gi|289579378|ref|YP_003478005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter italicus Ab9] gi|289529091|gb|ADD03443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter italicus Ab9] Length = 301 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 24/171 (14%) Query: 233 SYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +Y+L + E K ++++ +EL+ YE NK+++ E ++ ++K A + + L Sbjct: 127 NYLLINKLFEEYTKDVKVTEEELKKYYEDNKDRF---ETVKASHILVSDEKIAQDIYNRL 183 Query: 291 KKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 KG+ F LA+E QG L + + G E+ FSL KKG+ + Sbjct: 184 MKGEDFSTLAKEYSIDTATKDQGGDLGEFARGVMVPEF------EQVAFSL-KKGEISKP 236 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +GY H+ + + SF EVK DI + K ++ + E Y LE Sbjct: 237 VKTDYGY---HIIKSEGATLKSFDEVKGDIEAYLLNDKKNQVITEKYDALE 284 >gi|283954124|ref|ZP_06371649.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 414] gi|283794403|gb|EFC33147.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 414] Length = 273 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 97 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 157 LKGKELDAKFSKLAKEKSIDPGSKNQGGELGWFDESTMVK-PFTDAAFALKNGTITTTPV 215 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 216 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 249 >gi|330689730|pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK- 291 IL +V++++ I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 76 ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 135 Query: 292 -KGK----KFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KGK KF +LA+E+ G LG F + + D+ F+L T + Sbjct: 136 LKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVK-PFTDAAFALKNGTITTTPV 194 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +FGY + N + + F EVK+ I N ++ Sbjct: 195 KTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 228 >gi|297380175|gb|ADI35062.1| Hypothetical protein HPV225_1003 [Helicobacter pylori v225d] Length = 517 Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust. Identities = 54/273 (19%), Positives = 120/273 (43%), Gaps = 17/273 (6%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S + VG+ K+ Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 89 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 90 YRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 149 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 150 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP--- 205 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++L+ V + + +++E +K +++ P + + Sbjct: 206 -LEQSSLSLWAKLQDKLDILILSPNDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 262 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 FD ++ ++ EL+ Y KNK Y E Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKE 291 >gi|299822144|ref|ZP_07054030.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601] gi|299815673|gb|EFI82911.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601] Length = 287 Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 24/142 (16%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 I++++ +LQ Y K + P+I TV ++ ++K AD+ Q LK GKKF LA++ Sbjct: 120 IKVTDKKLQDYY-----KTWQPKI-TVSHILVADKKTADKVEQELKDGKKFADLAKKYST 173 Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN- 355 +G L G D + + ++L +KGD + + FGY + + Sbjct: 174 DTASKTKGGKLDAFGTGQM------DPAFEKAAYALKEKGDISKPVKSQFGYHVIQLDEP 227 Query: 356 -IKPSFTVSFQEVKKD-IANQM 375 K +F +VKKD I +QM Sbjct: 228 AKKATFEKDKAQVKKDYIDSQM 249 >gi|291482444|dbj|BAI83519.1| hypothetical protein BSNT_00126 [Bacillus subtilis subsp. natto BEST195] Length = 297 Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I+ISN EL++ Y KNKE Y + + +V +++EA E + LK G F +A E+ Sbjct: 131 RDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + + + IP + ++ + P I + GY I + Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEP-IKVNNGYAIIQLKEKL 249 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T SF EVK I Q+ + + +K Sbjct: 250 KARTFSFDEVKDQIRRQIAMDQLGDKA 276 >gi|149194720|ref|ZP_01871815.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2] gi|149135143|gb|EDM23624.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2] Length = 271 Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 245 KIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K+++SN EL+ Y++NKEK+ + +I +E + + DE + +KK + Sbjct: 128 KLKVSNKELKNFYDQNKEKFTTFKQIEVIEYI----SQNPDE-LKHIKKNPLY------- 175 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S I F IP ++L +F+ K+G+FTP+I+ YV+ +++ + + Sbjct: 176 NSSNIKIENRVFKYNQIP-LNLM-FLFNSTKEGEFTPIINNGNSYVMFYINKKEGKVILP 233 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F+++K IANQ+ K + +KE + L+ Sbjct: 234 FEQIKNIIANQLMQQKRNAILKEYFNTLK 262 >gi|124516598|gb|EAY58106.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum rubarum] Length = 324 Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DS 328 V+ +V Q+EA+ +L KG F +LA+ + + + S G K Y P ++ D+ Sbjct: 176 VDHIVVAKQEEAESIRDALIKGSSFARLAKLESLGM-EASSGGRMKPY-PRGTMPPPFDT 233 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +F++ K G+ TPV+ +GY + + P T+SF VK I ++ K + ++E Sbjct: 234 VFTM-KPGEITPVLSSPYGYHLFRLEKFIPEHTLSFSMVKNWIKKKLTRVKRQKVLQE 290 >gi|16804258|ref|NP_465743.1| hypothetical protein lmo2219 [Listeria monocytogenes EGD-e] gi|224500981|ref|ZP_03669288.1| hypothetical protein LmonFR_00430 [Listeria monocytogenes FSL R2-561] gi|46396978|sp|Q8Y557|PRSA2_LISMO RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|16411689|emb|CAD00297.1| lmo2219 [Listeria monocytogenes EGD-e] Length = 293 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 21/199 (10%) Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 N + D +AVLTQ K ++++ ++ Y L E + S+ L+ YE Sbjct: 78 NEYKSQYGDQFSAVLTQSGLTEK-SFKS----QLKYNLLVQKATEANTDTSDKTLKKYYE 132 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318 + P+I TV ++ ++ +A E Q LK G+KF LA+E + G Sbjct: 133 T-----WQPDI-TVSHILVADENKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGQLAP 186 Query: 319 YIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA--- 372 + P D + + ++L KGD + + +GY I + KP+ +F++ KK + Sbjct: 187 FGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFEKDKKAVKASY 244 Query: 373 --NQMRITKASEKVKEDYK 389 +Q+ + +K++YK Sbjct: 245 LESQLTTENMQKTLKKEYK 263 >gi|326318802|ref|YP_004236474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375638|gb|ADX47907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 299 Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 257 YEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEEQ----GKSL 307 Y+ E++ PE V ++ ++ + ++ Q LK G F QLA+E+ G + Sbjct: 130 YKAKPERFKVPEQVQVRHILIAGTGADSRAQIEKIEQELKGGADFAQLAKERSADKGSAA 189 Query: 308 SDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LG F + + +P+ A F+L K G + ++ FGY I + + T SF E Sbjct: 190 KGGDLGFFEAGKMVPEFDKA--AFALTKPGQLSGIVESKFGYHILQLEGRHAARTRSFDE 247 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEE 393 V+ ++ ++R E D + L++ Sbjct: 248 VRSELMQEVRANVQQEARVADAQALQQ 274 >gi|311070719|ref|YP_003975642.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942] gi|310871236|gb|ADP34711.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942] Length = 306 Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K I+IS E+++ Y KNKE Y + + +V +Q+EA+ + LK G F +A E+ Sbjct: 141 KDIDISEKEMKSFYTKNKELYQFDDSYRIRHIVVKDQEEANRVLKDLKGGSSFEAVAAER 200 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + +++ IP + ++ +L + T I S GY I + Sbjct: 201 STDRYTSPYGGDLGFVTEAQDSIPAAYITEA-RTLKENEWSTEPIKVSKGYAIIQLKEKL 259 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T ++ EVK I Q+ + + +K Sbjct: 260 NARTFTYDEVKDQIKRQIAMDQLGDKA 286 >gi|296329574|ref|ZP_06872060.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672771|ref|YP_003864442.1| putative secretion protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153317|gb|EFG94180.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411014|gb|ADM36132.1| putative secretion protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 297 Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I+ISN EL++ Y KNKE Y + + +V +++EA E + LK G F +A E+ Sbjct: 131 RDIDISNKELKSFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSFEAVAAER 190 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + + + IP + ++ + P I S GY + + Sbjct: 191 STDRYTSPYGGDLGFVTEASDNIPSAYIEEAQTLKEDEWSDEP-IKVSNGYAVIQLKEKL 249 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 + T S+ EVK I Q+ + + +K Sbjct: 250 KARTFSYDEVKDQIRRQIAMDQLGDKA 276 >gi|304440474|ref|ZP_07400362.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371040|gb|EFM24658.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 370 Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 26/156 (16%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ-- 303 ++IS ++ +A YEK+K+KYF + + ++ + EA + +++GK F +LA+E+ Sbjct: 160 LKISEEDAKAIYEKDKDKYF---VADADHILVETEDEAKSIKKEIEEGKDFNELAKEKSK 216 Query: 304 -------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 G L + S G KE+ D++ + K+G+ + + FGY + ++++ Sbjct: 217 DPTAKDNGGKLGEFSTGQMVKEF------EDAVVKM-KEGEISDPVKTQFGYHLIKLNSL 269 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + F EVK +Q+ T SEK+ E +LE Sbjct: 270 RHK---EFDEVK----DQIIETGTSEKLTEYLNKLE 298 >gi|27904901|ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396883|sp|Q89A98|PPID_BUCBP RecName: Full=Putative peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|27904299|gb|AAO27132.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 511 Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 77/155 (49%), Gaps = 13/155 (8%) Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L N++ + L Q++ + D+ V I + +F ++ KF+ + + L + I+ Sbjct: 91 LSNIIYESLLQQYVHQLHFNIDYSHVKNYIYKQTIF-RQNQKFNKEKYYEYLKKLQISSN 149 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK----RFYFENRSVD--YIVLNNRHVP 203 EYI K+++ + + F+ + ++ +L+ K + + + R V+ Y+ LNN + Sbjct: 150 EYIK---KVMTYLE-IKEFIKTLTNTDFILNNEKNNILKLFEQGRIVNKSYVNLNN--LK 203 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 I SN L +++ +K + +P+ +ISY L + Sbjct: 204 LIEHISNKELKRYYINHKHQFLSPKKFKISYFLIN 238 >gi|310817118|ref|YP_003965082.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25] gi|308755853|gb|ADO43782.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25] Length = 297 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----Q 303 ++++ LQA Y++ + + ++ Q+EAD L G+ F +A+E Sbjct: 124 VTDETLQAAYDRAFDGVTPGNEYSAAHILVATQEEADAVIARLNAGEDFATVAQELSLDT 183 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF---TPVIHGSFGYVIAHVSNIKPSF 360 G + LG F+ E + + A+++ L + G F + I FG+ I V +P Sbjct: 184 GSGAAGGELGWFAPEMMVE-PFANAVVELGEAGQFDTLSAPIESQFGFHIITVHEARPQS 242 Query: 361 TVSFQEVKKDIANQMR 376 + E++ ++ Q+R Sbjct: 243 LPTIAEIRTELEGQVR 258 >gi|109947212|ref|YP_664440.1| hypothetical protein Hac_0634 [Helicobacter acinonychis str. Sheeba] gi|109714433|emb|CAJ99441.1| conserved hypothetical secreted protein [Helicobacter acinonychis str. Sheeba] Length = 487 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 63/309 (20%), Positives = 136/309 (44%), Gaps = 28/309 (9%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+E ++ + V I++ + F+ + G FS+ S++ VG+ + Sbjct: 1 MIEWMQNHRKYLVVTIWISAIAFIAAGMIGWGQYSFSLD-SNSAAKVGKINISQEELAQE 59 Query: 60 WKQELGMISQKIGFV--VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ ++ I + E+ R++ L+K L+ L++ A L D+GL A + Sbjct: 60 YRRLKDAYAESIPNFKELTEEQIRAMHLEKSALNILINQALLRNLALDLGLGATKQEIAK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 120 EIRKTSVFQ-KDGVFDEELYKNILKQNNYRPKLFEESVERLLILQKISTLFPKTTTP--- 175 Query: 178 LLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L+Q+ + +D ++L V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDVKISLNEEE--MKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV---FPNQKEADEAF 287 FD + ++ ++ EL+ Y KNK Y E ++V++ V QK ++A Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 288 QS---LKKG 293 +S LKKG Sbjct: 289 RSYIALKKG 297 >gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] gi|300074343|gb|ADJ63742.1| peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 19/146 (13%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-QSLKKGKKFIQLAEE 302 KK +S+ +++AEY+K K + E LV ++KE EA LK G KF LA++ Sbjct: 107 KKNPVSDADIKAEYDKFKAQAGDKEYHARHILV--DKKEDAEAIIAKLKAGTKFEDLAKQ 164 Query: 303 --------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHV 353 G L + SF K + +D++ +L KKG+ TP + FG+ + + Sbjct: 165 SKDTGSAANGGDLDWATPASFVKPF------SDAMVAL-KKGEVTPTPVQTQFGWHVIKL 217 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK 379 +++P+ + EVK IA ++ K Sbjct: 218 EDVRPAKVPTLDEVKPQIAEALQQKK 243 >gi|297521372|ref|ZP_06939758.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 160 Score = 43.9 bits (102), Expect = 0.073, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 6/148 (4%) Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADP 208 D Y + L + G+ ++ +L D+ + R V ++ + A Sbjct: 15 DQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPV 74 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + + ++E+ K+N+ PE R+SYI D ++ +S+ ++Q+ Y+++++++ P+ Sbjct: 75 TEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQP--VSDADIQSYYDQHQDQFTQPQ 132 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + EA L KG F Sbjct: 133 RTRYSIIQTKTEDEAKAVLDELNKGGDF 160 >gi|282882218|ref|ZP_06290857.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B] gi|281297983|gb|EFA90440.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B] Length = 375 Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 76/141 (53%), Gaps = 12/141 (8%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 EK K I++++D+++ Y+++K+ +F + ++ + K+A+E + + KG KF + Sbjct: 159 TQEKNKNIKVTDDDVKKYYDEHKDDFFKAK---ASHILVDDLKKANEIKKEIDKGAKFEE 215 Query: 299 LAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +A+++ K + LG F+ + S D+I + +KG+ + I FG+ I + Sbjct: 216 MAKKESKDTGSATNGGDLGEFTNGQMVQ-SFNDAIKKM-EKGEISDPIKSDFGFHIIKLK 273 Query: 355 NIKPSFTVSFQEVKKDIANQM 375 KP +F EVK +I +++ Sbjct: 274 ERKPR---TFDEVKDEIKSKL 291 >gi|30249389|ref|NP_841459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] gi|30138752|emb|CAD85329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] Length = 264 Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S+ EL+ EYE K + E + ++ ++EA + +LKKG F +LA E+ Sbjct: 116 VSDSELRKEYESVKAQMGDKEYKA-RHILVETEQEAKDLVAALKKGSAFDKLAGERSIDT 174 Query: 308 SDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S G +S + AD++ L K + + FG+ + + +++ + SF Sbjct: 175 GSKSNGGELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDVRTAVPPSF 234 Query: 365 QEVKKDIANQMRI 377 +EVK+++ Q R+ Sbjct: 235 EEVKQNM--QQRV 245 >gi|167036601|ref|YP_001664179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039253|ref|YP_001662238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X514] gi|300913893|ref|ZP_07131210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X561] gi|307725422|ref|YP_003905173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X513] gi|320115028|ref|YP_004185187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853493|gb|ABY91902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X514] gi|166855435|gb|ABY93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890578|gb|EFK85723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X561] gi|307582483|gb|ADN55882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X513] gi|319928119|gb|ADV78804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 301 Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 28/168 (16%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 LFD E K ++++ +EL+ YE N+E++ E ++ ++K A++ + L KG+ Sbjct: 134 LFD--EYTKDVKVTEEELKKYYEDNEEQF---ETVKASHILVVDEKTAEDIYNRLMKGED 188 Query: 296 FIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F LA+E QG L + G E+ +FSL KKG+ + + + Sbjct: 189 FATLAKEYSVDTATKDQGGDLGEFPHGVMVPEF------DQVVFSL-KKGEISKPVKTDY 241 Query: 347 GYVIAHVSN--IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I IKP F EVK I + + K ++ + E Y LE Sbjct: 242 GYHIIKSDGVIIKP-----FDEVKDTIESYLLDDKKNQVIIEKYDALE 284 >gi|47097568|ref|ZP_00235100.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|224498964|ref|ZP_03667313.1| hypothetical protein LmonF1_04383 [Listeria monocytogenes Finland 1988] gi|254826892|ref|ZP_05231579.1| export protein [Listeria monocytogenes FSL N3-165] gi|254831344|ref|ZP_05235999.1| hypothetical protein Lmon1_08297 [Listeria monocytogenes 10403S] gi|254899079|ref|ZP_05259003.1| hypothetical protein LmonJ_04684 [Listeria monocytogenes J0161] gi|254912780|ref|ZP_05262792.1| protein export protein [Listeria monocytogenes J2818] gi|254937107|ref|ZP_05268804.1| export protein [Listeria monocytogenes F6900] gi|255025820|ref|ZP_05297806.1| hypothetical protein LmonocytFSL_04835 [Listeria monocytogenes FSL J2-003] gi|284802666|ref|YP_003414531.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578] gi|284995808|ref|YP_003417576.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923] gi|47014054|gb|EAL05055.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|258599272|gb|EEW12597.1| export protein [Listeria monocytogenes FSL N3-165] gi|258609709|gb|EEW22317.1| export protein [Listeria monocytogenes F6900] gi|284058228|gb|ADB69169.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578] gi|284061275|gb|ADB72214.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923] gi|293590774|gb|EFF99108.1| protein export protein [Listeria monocytogenes J2818] Length = 293 Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 16/167 (9%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G+KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389 Y I + KP+ +F++ KK + +Q+ + +K++YK Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263 >gi|20808913|ref|NP_624084.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter tengcongensis MB4] gi|46396955|sp|Q8R760|PRSA_THETN RecName: Full=Foldase protein prsA; Flags: Precursor gi|20517573|gb|AAM25688.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter tengcongensis MB4] Length = 306 Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 28/171 (16%) Query: 234 YILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 Y+L D + E K ++++++EL+ Y+++KE + E+ ++ ++K A++ +Q L Sbjct: 133 YLLIDKLLAEYTKDVKVTDEELKKYYDEHKESF---EVMRARHILVADEKTAEDIYQRLM 189 Query: 292 KGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KG+ F LA+E G L + G E+ ++ FSL K G+ + + Sbjct: 190 KGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMVPEF------EEAAFSL-KLGEISKPV 242 Query: 343 HGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +GY I I KP F EVK I + + K ++ +KE Y L Sbjct: 243 KTQYGYHIIKSEGITVKP-----FDEVKGTIESYLLNDKKNKVIKEKYDEL 288 >gi|291297351|ref|YP_003508749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber DSM 1279] gi|290472310|gb|ADD29729.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber DSM 1279] Length = 620 Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 27/184 (14%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFI 297 V E +KK E + +E++ +E N+++Y + E Q+V ++ AD+ + + G F Sbjct: 151 VEEIQKKAEPTEEEMRLYFELNRDQYKNEERVQARQIVVDDKTTADKIYAEVTAPGADFA 210 Query: 298 QLAE-------EQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +A+ EQG +L + G ++ P+ ++A+++F L + G + I Sbjct: 211 AIAKANSKLNAEQGGALGAQAGQSEPGPVTRVVFPN-AVAEAVFKL-RDGQISKPIEAGG 268 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + I V P+ V F+EVK ++VKED KR++ AL ++E+ Sbjct: 269 RFYIVKVEKYLPAGDVKFEEVK-------------DRVKEDAKRIKGQGALEAYIEELRA 315 Query: 407 REKI 410 + + Sbjct: 316 KANV 319 >gi|34498008|ref|NP_902223.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC 12472] gi|34103863|gb|AAQ60223.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC 12472] Length = 612 Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust. Identities = 89/446 (19%), Positives = 182/446 (40%), Gaps = 31/446 (6%) Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L+NL+ L D G ++ IA P F ++ +FS + L N + Sbjct: 71 LENLIRQELLLAEARDHGAAVSPDQLRKAIASIPAFQ-ENGQFSAQRYSEFLKSRYPNPE 129 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209 + ++ + + G SN ++ + E R + +VL + Sbjct: 130 AFEADISRDILLQSQLSSVAGTQFVSNTVVTRVAGLLGEGRELQPLVLKPSDFASEVKTD 189 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 A + +++ + PE ++ Y++ + I++S+ E+Q Y+++K + Sbjct: 190 AAAIKAYYDANAKRFSLPEQVKLDYVVLSQDALAQGIKVSDAEVQKYYDQHKADLAGEQR 249 Query: 270 R------TVEQLVFPNQK-----EADEAFQSLK-KGKKFIQLA----EEQGKSLSDISLG 313 R TV + P QK EA+ + ++ KF +LA ++ G + LG Sbjct: 250 RASHILLTVAKDAKPEQKAKVKAEAEAILKEVRVNPAKFAELAKAKSQDPGSAEKGGDLG 309 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 F + D++F + K G + ++ +G+ I + +K + S +VK + + Sbjct: 310 FFGHGMMVK-PFDDAVFKM-KPGQISDLVETEYGFHIIRLDAVK---SQSLDDVKGAVVD 364 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 +++ KA+ E +L E D + + +++ D+ ++ ++ + Sbjct: 365 KLQKQKAAALFHEQAGKLNEIAY--QQADSLKGVVDALKLEVKHSDWVRRNQPSQD--EL 420 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPD--GSYMWV-QIKESIPARDRKLEEVLTDVKKDW 490 +LL VF DD L K H + D G+ + V +I E P R + L +V ++K+ Sbjct: 421 LGNAKLLSAVF-SDDVLKKKHNSEVVDIGGNRLVVARIAEHQPERQQPLADVTDAIRKEL 479 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKN 516 + +++ K Q +L K GK Sbjct: 480 -VERDGAKLADKKGQALLAELKAGKG 504 >gi|226940618|ref|YP_002795692.1| signal peptide protein [Laribacter hongkongensis HLHK9] gi|226715545|gb|ACO74683.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9] Length = 263 Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K+ +S+ +++AEY+K K + Q++ ++ EA+ LKKG F +A+++ Sbjct: 110 KQNPVSDAQVRAEYDKLKSALSGQKEVQARQIIVGSEAEANAVIAQLKKGGNFEAIAKQK 169 Query: 304 GKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNI 356 K + D+ G+ P LAD++ L KG +T S G+ I V N+ Sbjct: 170 SKDPAAKQNGGDMGWGNLGVMAKP---LADTLKPLG-KGQYTQQPFKSDLGWHIFKVENV 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 + + F EVK ++ QM+ A EK D + Sbjct: 226 RDAKVPQFDEVKPQLSRQMQ-GAAVEKALNDLR 257 >gi|114331519|ref|YP_747741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] gi|114308533|gb|ABI59776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] Length = 264 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S+DEL+ EYE K + E + ++ ++EA + SLKKG F +LA E+ Sbjct: 116 VSDDELRKEYESVKSQMGDKEYK-ARHILVETEQEAKDLVASLKKGGVFEKLAGERSIDT 174 Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S G +S + +D++ L K + + FG+ + + +++ + SF Sbjct: 175 GSKSNGGELGWSSAAVYVKPFSDALTKLKKGETTSQPVQTPFGWHVIRLDDVRTAVPPSF 234 Query: 365 QEVKKDIANQMRI 377 EVK+++ Q R+ Sbjct: 235 DEVKQNM--QQRV 245 >gi|322418543|ref|YP_004197766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320124930|gb|ADW12490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 335 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 20/144 (13%) Query: 245 KIEISNDELQAEYEKNKEKYFS-PE--------IRTVEQLVFPNQKEADEAFQSL----K 291 K+E+++ E Q Y++N+EKYF+ PE ++ ++L +++A E ++L K Sbjct: 166 KVEVTDAEAQKFYQENQEKYFTRPENARASHILVKVDDKLTAEQKQQAKEKAEALLKRVK 225 Query: 292 KGKKFIQLAE-EQGKSLSDIS--LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +A+ E G + + LG+F + + +P A +F++ K G+ + V+ FG Sbjct: 226 GGEDFAAVAKTESGCPSATVGGDLGTFGRGQMVPPFEKA--VFAM-KPGEISSVVESQFG 282 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371 + I + + VS++E K I Sbjct: 283 FHIIKLVEKHEAGKVSYEEAKTKI 306 >gi|226224827|ref|YP_002758934.1| post-translocation molecular chaperone [Listeria monocytogenes Clip81459] gi|254825217|ref|ZP_05230218.1| rotamase [Listeria monocytogenes FSL J1-194] gi|254853343|ref|ZP_05242691.1| export protein [Listeria monocytogenes FSL R2-503] gi|254992110|ref|ZP_05274300.1| post-translocation molecular chaperone [Listeria monocytogenes FSL J2-064] gi|255520683|ref|ZP_05387920.1| post-translocation molecular chaperone [Listeria monocytogenes FSL J1-175] gi|300763971|ref|ZP_07073967.1| protein export protein [Listeria monocytogenes FSL N1-017] gi|225877289|emb|CAS06003.1| Putative post-translocation molecular chaperone [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606707|gb|EEW19315.1| export protein [Listeria monocytogenes FSL R2-503] gi|293594463|gb|EFG02224.1| rotamase [Listeria monocytogenes FSL J1-194] gi|300515312|gb|EFK42363.1| protein export protein [Listeria monocytogenes FSL N1-017] Length = 293 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389 Y I + KP+ +F++ KK + +Q+ + +K++YK Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263 >gi|46908453|ref|YP_014842.1| protein export protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094429|ref|ZP_00232114.1| protein export protein [Listeria monocytogenes str. 4b H7858] gi|254931668|ref|ZP_05265027.1| rotamase [Listeria monocytogenes HPB2262] gi|67461025|sp|Q71XE6|PRSA2_LISMF RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|46881724|gb|AAT05019.1| protein export protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017195|gb|EAL08043.1| protein export protein [Listeria monocytogenes str. 4b H7858] gi|293583223|gb|EFF95255.1| rotamase [Listeria monocytogenes HPB2262] gi|328472118|gb|EGF42993.1| post-translocation molecular chaperone [Listeria monocytogenes 220] gi|332312671|gb|EGJ25766.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A] Length = 293 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389 Y I + KP+ +F++ KK + +Q+ + +K++YK Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263 >gi|208779446|ref|ZP_03246792.1| numod1 domain family protein [Francisella novicida FTG] gi|208745246|gb|EDZ91544.1| numod1 domain family protein [Francisella novicida FTG] Length = 477 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 24/228 (10%) Query: 97 ATLDQFIEDIGLEADHGR---------VWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGI 146 A L Q I+ + AD R + I + +F KD KFS + +A G+ Sbjct: 72 AILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNSMFFDKDGKFSAEKLKQVVAYLGGM 131 Query: 147 NEKEYI---DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 ++ E I + ++ +T +V F+ + LL Y N+ +DY+ ++ Sbjct: 132 DKLEQILAQNIQATIIPKT-IVDTFIVTDYDTKLL----NSIYSVNKYIDYLKVSPADFK 186 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE- 262 + PS L +++ +K+ Y P K ISY + K +IS DE++A Y+ +KE Sbjct: 187 SQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDNFVPKNKISEDEIKAYYQAHKEL 246 Query: 263 -KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKS 306 K F ++ Q + N + A E F + K+ +L ++ GK+ Sbjct: 247 FKDFDNNAKSTIQKIIQN-RHALEQFNEYTQNIDSIKYTKLEKQFGKA 293 >gi|257094858|ref|YP_003168499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047382|gb|ACV36570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 269 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 17/152 (11%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 YI V + KK IS+++ +A YE+ K + S E + V ++ + +A +LKKG Sbjct: 108 YIRAFVQDYVKKNPISDEQAKAAYERMKSQMGSTEYK-VRHILVEKEDDAKTIIVNLKKG 166 Query: 294 KKFIQLAE--------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHG 344 KF +LA+ E+G L S ++ K + D++ LAK G FT + Sbjct: 167 AKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPF------GDAVAGLAK-GKFTETPVKT 219 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 FGY + V + +P F ++K I +++ Sbjct: 220 DFGYHVILVEDSRPLTPPPFDQIKPQINQRLQ 251 >gi|325265502|ref|ZP_08132223.1| PPIC-type PPIASE domain protein [Clostridium sp. D5] gi|324029250|gb|EGB90544.1| PPIC-type PPIASE domain protein [Clostridium sp. D5] Length = 246 Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 20/156 (12%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA--- 300 K I +S+DE A YE NK+++ E+ + + ++ ++++ +S+ G K + A Sbjct: 90 KDITVSDDEASAYYEANKQQFSKGEMVSAKHILTDSEEKCSAVLESITNGDKSFEDAARE 149 Query: 301 ------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 E G L G KE+ D+ F+ A+ G + FGY + V Sbjct: 150 SSMCPSSENGGDLGKFGRGQMVKEF------EDAAFA-AEPGHVVGPVQSQFGYHLIKVE 202 Query: 355 NIKPSFTVSFQEV----KKDIANQMRITKASEKVKE 386 + + T EV K ++ QM+ + SE +KE Sbjct: 203 EKEEAATAPLNEVIESIKMNMLQQMQSSAYSEMIKE 238 >gi|32490901|ref|NP_871155.1| hypothetical protein WGLp152 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166107|dbj|BAC24298.1| ppiD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 628 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 84/164 (51%), Gaps = 11/164 (6%) Query: 224 YRAPEYKRISYILFDVHEKEKKIEI--SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 Y P+ I+Y+ ++++ + K +I + E+Q Y KN +K+ PE + + F ++K Sbjct: 222 YVTPKKFNINYLKININDIKNKDKIIAKSKEVQEWYLKNIKKFTLPEKKRYSIIQFDSEK 281 Query: 282 EADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEY-IPDVSLADSIFSLAKKG 336 EA +K K F ++A+ + K S+++ +G +++ I ++ +A+ L K Sbjct: 282 EAIFYLNKIKNEKDFFEIAKNKSKDIFSSVNNGDIGWIQEDFIIEEIKIAN----LKNKN 337 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + +I S GY+I ++ I P + K+I N ++ K+ Sbjct: 338 EISKIIKSSSGYLIIMLTEIIPKVEQDLKYFYKEIENYIKEEKS 381 >gi|238024473|ref|YP_002908705.1| hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1] gi|237879138|gb|ACR31470.1| Hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1] Length = 278 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 39/183 (21%) Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 PS A ++ ++ K+K +Y +S+IL ++EK+ + Sbjct: 120 PSEAEISAYYNKHKSDYN---LYSLSHILV------------------KFEKDPSNLPAE 158 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---- 323 + + +E F N+ +A EA LK G F +LA + LSD + +P+ Sbjct: 159 QAKKIEAQAF-NKAQAIEA--RLKAGADFHELAAQ----LSDDANSRIDGGRVPETMARF 211 Query: 324 ---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + I + AK+GD TP + SFGY I V + PS + D+ N +R K Sbjct: 212 LAPAFKPEILA-AKQGDITPPLKSSFGYHIIMVEGVVPS---DMARNRADVINDIREGKL 267 Query: 381 SEK 383 +EK Sbjct: 268 AEK 270 >gi|152993388|ref|YP_001359109.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1] gi|151425249|dbj|BAF72752.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1] Length = 282 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 16/159 (10%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQL 299 I IS+ E + YEKNK+K+ E+ ++ ++K A E + LK KG KKFI+L Sbjct: 111 IVISDSEAKDFYEKNKDKFIQKEMVQARHILVKDEKTAKEIIKELKPLKGEALKKKFIEL 170 Query: 300 AEEQGKSLSDIS-----LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A + KS+ + LG F+K + +P+ S A ++ L K + FGY I + Sbjct: 171 A--KSKSIGPSAPKGGELGKFAKGQMVPEFSKA--VWKLEKDQITLEPVKTQFGYHIILL 226 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + TV + +VK I ++ + ++KV K L+ Sbjct: 227 EDKIEAQTVPYDKVKDQIIASLKQQEFAKKVAAIAKELK 265 >gi|328465802|gb|EGF36990.1| protein export protein [Listeria monocytogenes 1816] Length = 266 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371 Y I + KP+ +F++ KK + Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAV 240 >gi|197123566|ref|YP_002135517.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] gi|196173415|gb|ACG74388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] Length = 590 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 14/139 (10%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL---AEE 302 + + +D+L+A Y+ +++++ + + ++QL FP+ K A A + L +G F L AE Sbjct: 426 VSLKDDDLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRATERLARGTDFKWLKANAEG 485 Query: 303 Q---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF---GYVIAHVSNI 356 Q + D S + +P+ LA ++ S A+ GD+ +H GYV+ VS Sbjct: 486 QLPPAQRALDFEGQLLSAKGLPE-DLAGALAS-AQVGDYR--LHQGPRGQGYVVQVVSRT 541 Query: 357 KPSFTVSFQEVKKDIANQM 375 P F+E K DI ++ Sbjct: 542 DPQVQ-PFEEAKPDIQKKL 559 >gi|213024001|ref|ZP_03338448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 215 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 92/184 (50%), Gaps = 13/184 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P F D KF ++ + + + + G+ D YT+ L + G+ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMT----ADQYTQALRNQLTTQQLINGVAGT 172 Query: 176 NLLL 179 + +L Sbjct: 173 DFML 176 >gi|120612784|ref|YP_972462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120591248|gb|ABM34688.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 299 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 12/130 (9%) Query: 257 YEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEEQ----GKSL 307 Y+ E++ PE V ++ ++ + ++ Q LK G F QLA+E+ G + Sbjct: 130 YKAKPERFKVPEQVQVRHILIAGKGADSRAQIEKIEQELKGGADFAQLAKERSADKGSAA 189 Query: 308 SDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LG F + + +P+ A F+L K G+ + ++ FGY I + T SF E Sbjct: 190 KGGDLGFFEAGKMVPEFDKA--AFALTKPGELSGIVESKFGYHILQLEGRHAPRTRSFDE 247 Query: 367 VKKDIANQMR 376 V+ ++ ++R Sbjct: 248 VRSELMQEVR 257 >gi|89256253|ref|YP_513615.1| hypothetical protein FTL_0896 [Francisella tularensis subsp. holarctica LVS] gi|254367592|ref|ZP_04983613.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp. holarctica 257] gi|89144084|emb|CAJ79335.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|134253403|gb|EBA52497.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp. holarctica 257] Length = 476 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 51/271 (18%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQEL 64 K TW+ I + +FV I G++ F+ GSS V VG ++ F Sbjct: 10 KGPFTWIVVISISFIFV---ISGMT-FFFTNIGSSRAYVAKVGDNEISSQQF-------- 57 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR---------V 115 Q + E+ R++ L Q I+ + AD R + Sbjct: 58 ---QQYVQSATTEEQKRAI---------------LSQMIDQYLILADAQRHDIVVSKLAL 99 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I +P+F KD KFS + +A G +D ++L++ + + + Sbjct: 100 QSAIFTNPMFFDKDGKFSAEKLKQVVAYLG-----GMDKLEQILAQNIQATIIPKTIVDT 154 Query: 176 NLLLDQAKRF----YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 +++ D + Y N+ +DY+ ++ + PS L +++ +K+ Y P K Sbjct: 155 SIVTDYDTKLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQH-LQSYYDSHKNEYITPAQKT 213 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 ISY + K +IS DE++A Y+ +KE Sbjct: 214 ISYFIITKDNFVPKNKISEDEIKAYYQAHKE 244 >gi|297622266|ref|YP_003703700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera radiovictrix DSM 17093] gi|297163446|gb|ADI13157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera radiovictrix DSM 17093] Length = 398 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E ++E+ ++ + A YE N+ ++ E ++ ++ A+ L+ G+ F +LA + Sbjct: 188 EAEVEVGDEAVSAYYEANQAQFERSEEVCARHILVEDEATAEALLTRLEAGEDFGELARD 247 Query: 303 Q----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 G + LG + +P+ ++ F+ + G+ T + FGY + V Sbjct: 248 NSTDPGSAPEGGDLGCLPRGVTVPEFE--EAAFAT-EVGETTGPVRSDFGYHLIRVYERN 304 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 P+ T +EV+ I Q+R +E++ Sbjct: 305 PAETAPLEEVRSQIEGQLRNEGLNERI 331 >gi|171914553|ref|ZP_02930023.1| hypothetical protein VspiD_25280 [Verrucomicrobium spinosum DSM 4136] Length = 518 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 81/388 (20%), Positives = 148/388 (38%), Gaps = 51/388 (13%) Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 G + +GFVV +A + + NL+ L + +E G++A + + P+ Sbjct: 80 GDFASTMGFVVQKYQAEGM-IPVDFAFNLL---VLREELEKNGVQATNEEAREAFRKLPI 135 Query: 125 FHGKDNKFSHDV---FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F KD F +V F + + G+ + + D + + + G +N + Q Sbjct: 136 FQNKDGNFDGNVAEQFQNNIGALGLRDTDVFDVLRDWIGFKRLHEIVAGNAVLNNNVSKQ 195 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 F+ I A P++ + +++E+ K+ ++ + +SY+LF + Sbjct: 196 LYASTFQTVKAASIPFITDDFKKDAKPTDEEIAKYYEEKKEAFKTAPKRAVSYVLFAKPD 255 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 EK L AE F+ + D ++ G K +A+ Sbjct: 256 VEK--------LNAEDTVKARNEFAARVN-------------DFGVAAIAPGAKLEDVAK 294 Query: 302 EQGKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPV---IHGSFGYVIAHV 353 L L F+ E P+ L IF + + PV + G+ GY V Sbjct: 295 TAKVELKTEPL--FTMEAPPEALKEEPGLVSEIFRIDPQN--RPVSDPVEGAKGYYFFSV 350 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASE----KVKEDYKRLEEFLALGTSMDEISRREK 409 + + EVK+ +A Q+ KA E E K+LEE + G + DE ++ Sbjct: 351 TQEEEPKQQELAEVKEKVAEQLTSQKAQELMTKAASEARKKLEESIKGGKTFDEAAKEAN 410 Query: 410 IVSIDLPLVDFAGKD-----VKGKEVAA 432 + LP +F+ + G+E+AA Sbjct: 411 LTPQQLP--EFSPSNPLMDRTNGREIAA 436 >gi|149194584|ref|ZP_01871680.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2] gi|149135328|gb|EDM23808.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2] Length = 482 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 39/379 (10%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 W+A I V F+ WG F +ST+ V ++ + N++ ++Q++ Sbjct: 17 WIATIAFV--GAGFVGWG--QFQFG-KKTSTIAKVKDTEITIQDWQNAYNNLFDRVNQQL 71 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G ++ A+ +GL K+ LD + L Q+ +D+GL + +I +F K N Sbjct: 72 GGKLDEATAKKLGLQKEALDIAIQQGILRQYAKDLGLYVTDNDIAKKILE--VFKNKQN- 128 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 + + L G K++ ++ K L ++ ++P + + + Sbjct: 129 -----YENYLKNTGQKAKDFENNLRKQLLVEKLLKYL--NLKPQKTEIMTIASALYNADN 181 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISN 250 +D V+N ++ D + + +++EK K+ Y + +YK I+ + E ++S Sbjct: 182 LDIKVINKNNIKVDVDENE--IKKYWEKNKNKYLSQNQYK----IMIETIPLEG--DVSE 233 Query: 251 DELQAEYEKNKEKYFSP--EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 +EL+ Y +NK Y + EI + E+ NQ + D LKK + K Sbjct: 234 EELKKYYNENKLNYKNEKGEILSFEKA--KNQVKIDYLAHKLKKKAIIAYKNLKNSKGNY 291 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH-VSNIKPSFTVSFQEV 367 I + + + IP D + L G P ++ Y+ A + +KP+ + F++V Sbjct: 292 KIITVNENNKLIP----FDKMQILKNNGYLKPFVYNQ-QYITAKLIEELKPT-PLPFEKV 345 Query: 368 K----KDIANQMRITKASE 382 K KD N+M K E Sbjct: 346 KNIVIKDYINEMSSKKLIE 364 >gi|94310806|ref|YP_584016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] gi|93354658|gb|ABF08747.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] Length = 264 Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S++EL+ +YEK K ++ + + V ++ + +A +K G KF +A+ Q K Sbjct: 110 SDEELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKALIAKIKAGAKFEDVAKAQSKDTG 169 Query: 309 DISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362 + G + S Y+P+ S A + KKG T + FG+ I + + + + Sbjct: 170 SAANGGDLDWANSSSYVPEFSAA---MTNLKKGQMTDTPVKTQFGWHIIELVDTRDAKIP 226 Query: 363 SFQEVKKDIANQM 375 SF+EVK + M Sbjct: 227 SFEEVKPQLQQMM 239 >gi|254479750|ref|ZP_05093031.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034310|gb|EEB75103.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM 12653] Length = 271 Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 28/171 (16%) Query: 234 YILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 Y+L D + E K ++++++EL+ Y+++KE + E+ ++ ++K A++ +Q L Sbjct: 98 YLLIDKLLAEYTKDVKVTDEELKKYYDEHKESF---EVMRARHILVADEKTAEDIYQRLM 154 Query: 292 KGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 KG+ F LA+E G L + G E+ ++ FSL K G+ + + Sbjct: 155 KGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMVPEF------EEAAFSL-KLGEISKPV 207 Query: 343 HGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +GY I I KP F EVK I + + K ++ +KE Y L Sbjct: 208 KTQYGYHIIKSEGITVKP-----FDEVKGTIESYLLNDKKNKVIKEKYDEL 253 >gi|167629347|ref|YP_001679846.1| ppic-type ppiase domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167592087|gb|ABZ83835.1| ppic-type ppiase domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 338 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 I+IS+ +++ Y N +K+ ++ ++EA L++G F QLA ++ Sbjct: 151 IQISDADVEKYYRDNPDKFKQNRQVKASHILLKTEEEAKAIIAELERGADFAQLAVQKST 210 Query: 306 SLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDF--TPVIHGSFGYVIAHVSNIKPS 359 + LG F E + +D+ FS+ KKG+ TPV +FGY + V +IK + Sbjct: 211 DSTAAQNKGDLGYFQAEDMVK-EFSDAAFSM-KKGETSRTPV-KSNFGYHVIRVEDIKEA 267 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 F EVK +Q+R+ +++ +E R E + A + +I R+ Sbjct: 268 RQQRFDEVK----DQIRVDLGADRKQE---RFESWFADVKAQAKIERK 308 >gi|224373789|ref|YP_002608161.1| putative periplasmic protein [Nautilia profundicola AmH] gi|223588950|gb|ACM92686.1| putative periplasmic protein [Nautilia profundicola AmH] Length = 270 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 14/150 (9%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 + K++IS DEL+ YE NK+++ V + N+K +E +KK LA Sbjct: 126 QTKLKISQDELKNFYENNKDQFKIFSTVQVTKYTANNKKSLNE----IKKNP----LANA 177 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 K+ + + +S +P L +F K G+FTP+I+ Y + +V+ S + Sbjct: 178 NVKTETKV----YSYNELPLGLLF--LFKQTKVGEFTPIINDGLAYSMYYVARKDGSVYI 231 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F++VK IAN++ K +K+ + +L+ Sbjct: 232 PFEKVKNAIANKLAAQKREMILKDYFNKLK 261 >gi|94971251|ref|YP_593299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] gi|94553301|gb|ABF43225.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] Length = 369 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 27/143 (18%) Query: 246 IEISNDELQAEYEKNKEKYFSPE-IRTVEQLVF------PN----QKEADEAFQSLKKGK 294 I+I+ DE Q Y+ +K + PE +R E LV PN Q++A+ LK GK Sbjct: 163 IQITKDEEQKFYDAHKSEMERPEQVRLSEILVPVDAEKDPNATAAQQKAEGIIAELKAGK 222 Query: 295 KFIQL---------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 KF + A+EQG L G +K+ L D++F L K+G++T I Sbjct: 223 KFDDVAKAESAGPTAKEQGGDLGYFKRGVLAKQ------LEDTVFPL-KEGEYTEPIRTK 275 Query: 346 FGYVIAHVSNIKPSFTVSFQEVK 368 G+VI V+ + S Q+++ Sbjct: 276 QGFVIIKVTEHQQSGVPPLQQIE 298 >gi|57505869|ref|ZP_00371794.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter upsaliensis RM3195] gi|57015899|gb|EAL52688.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter upsaliensis RM3195] Length = 273 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 +L +V++ + + I++ +++ YEKNKE++ P + ++ N++EA LK Sbjct: 97 LLLNVYQNKIMQDIKVDATKVKEAYEKNKEQFVKPARVKAKHILVTNEQEAKNIINELKG 156 Query: 293 ------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV- 341 KKF ++A + G + + LG F + + D+ FSL KKG+ T Sbjct: 157 LKDKELEKKFTEIARTKSIDTGSAANGGDLGWFDESTMVK-PFTDATFSL-KKGEITKTP 214 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + +FGY I + + V+F++ K I N+ + Sbjct: 215 VKTNFGYHIILKQDSRAKEQVAFKDAKMGIENRFK 249 >gi|294102245|ref|YP_003554103.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM 12261] gi|293617225|gb|ADE57379.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM 12261] Length = 358 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEAFQSLKK-GKKF 296 V + + ++ +E+Q Y+K K+ +FS P R V F N++ AD+ ++ LKK G K+ Sbjct: 160 VEQAASTVVVTPEEVQEFYDKGKDAFFSRPAGRKVVYARFSNKEAADKIYEELKKDGSKW 219 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIH-GSFGYVIAHV 353 L EE S+G + ++P+ + D +L G P I S ++ Sbjct: 220 DALLEEVTSEDKKESIGYEAPVFVPESGMQDKFETLKDLSVGQVAPPIEITSNDIMVVLN 279 Query: 354 SNIKPSFTVSFQEVKKDI 371 + + TVSF EV DI Sbjct: 280 KEVLEASTVSFDEVSNDI 297 >gi|291279157|ref|YP_003495992.1| hypothetical protein DEFDS_0758 [Deferribacter desulfuricans SSM1] gi|290753859|dbj|BAI80236.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 325 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 18/111 (16%) Query: 281 KEADE-AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KE DE A+Q KG + EQ ++ FSK Y P IF L KKGDF Sbjct: 216 KEEDEKAWQKCDKG-----IYPEQD------TVYKFSKNY-P----IKEIFKL-KKGDFG 258 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +GY+I V +IKPS + F E+K +I M++ K + K KR Sbjct: 259 GPYRNIYGYLIVKVIDIKPSEVLPFDEIKNEIERLMKLKKFKDYYKNLLKR 309 >gi|322434836|ref|YP_004217048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX9] gi|321162563|gb|ADW68268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX9] Length = 662 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 81/369 (21%), Positives = 147/369 (39%), Gaps = 50/369 (13%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + GG+ S+ + + R DY V+ + + A +PS++ L +F+ + Y Sbjct: 179 LITGGVTVSDNAVRDSYRVSGTKVKFDYAVITSDTLRATVNPSDSDLQTFFKTNQARYAT 238 Query: 227 --PEYKRISYILFDVHE-KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----- 278 PE ++++Y F + K ++++ +LQ Y + +Y + V ++ Sbjct: 239 AVPESRKLNYFAFGADQIPGGKPQVTDADLQTYYNAHLAQYQVKDQAKVRHILIAVPAGA 298 Query: 279 -------NQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVSLA 326 + +AD+ + +K G F LA ++ G + LG S + +P+ A Sbjct: 299 DARTDAAAKAKADDLLKQIKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTVPEFDKA 358 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FSL K G + VI FGY I V + + T EVK +I + E Sbjct: 359 S--FSL-KPGQTSDVIKTKFGYHILQVEERQNAHTKPLNEVKAEIT----------PIVE 405 Query: 387 DYKRLEEFLALGTSMDEISRREKI------VSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 K A S+ + +R+ I + DF GKD V + LL Sbjct: 406 QQKFGNAEAAYAKSLSDEARKNGIDKTAAAHGLHATTTDFVGKD---GVVPGVSDSTALL 462 Query: 441 FRVFG---KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + F K DP+S V+ DG + Q+ + + + + D++ K + Sbjct: 463 AQAFTTTKKGDPIS----VSTGDG-FAIFQVVDIQAPHAPTFDAYKSHILDDYRAEKVPQ 517 Query: 498 EVSSKANQL 506 ++ K N+L Sbjct: 518 LLNEKLNKL 526 >gi|290893167|ref|ZP_06556155.1| rotamase [Listeria monocytogenes FSL J2-071] gi|290557329|gb|EFD90855.1| rotamase [Listeria monocytogenes FSL J2-071] Length = 293 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389 Y I + KP+ +F++ KK + +Q+ + +K++YK Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263 >gi|329767659|ref|ZP_08259179.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341] gi|328839086|gb|EGF88672.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341] Length = 312 Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 29/139 (20%) Query: 249 SNDELQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQLA 300 ++D+L+ YEKNK +Y I +V+ PN +K+A+E + LK G F LA Sbjct: 130 NDDKLKESYEKNKHQYHLAHILVSVKSESNPNGLSDEEAKKKAEEVLKKLKDGGDFATLA 189 Query: 301 EEQGKSLSDISLG-----------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 +E ++ S G SF KE+ D+ ++L+ K + V+ SFGY Sbjct: 190 KENSNDTANASNGGDLGWSSKEDNSFVKEF------KDAAYALS-KDKTSDVVKTSFGYH 242 Query: 350 IAHVSNIKPSFTVSFQEVK 368 I V + K S SF E+K Sbjct: 243 IIKVLDEKDS---SFDELK 258 >gi|217963619|ref|YP_002349297.1| foldase protein PrsA [Listeria monocytogenes HCC23] gi|217332889|gb|ACK38683.1| foldase protein PrsA [Listeria monocytogenes HCC23] Length = 293 Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389 Y I + KP+ +F++ KK + +Q+ + +K++YK Sbjct: 219 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263 >gi|299143243|ref|ZP_07036323.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517728|gb|EFI41467.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 331 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 26/164 (15%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 K+ E +++E+Q Y+KNK+ +F + + TVE EA++ + L KG F + Sbjct: 131 KEFEPTDEEIQKYYDKNKDNFFKAKASHILVETVE--------EANKLKKELNKGADFAE 182 Query: 299 LAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +A+E G + + SLG F + V+ + + + K G+ + + FGY H+ Sbjct: 183 MAKENSKDPGSAANGGSLGEFKNGDM--VAEFNDVVKILKVGEISDPVKSKFGY---HIV 237 Query: 355 NIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDYKRLEEFL 395 + + EVK+++ Q+ + T EK+++D K + E+L Sbjct: 238 KVDEKSARTLDEVKEELKQQLTQAKFTDYIEKMQKDAK-ISEYL 280 >gi|119503111|ref|ZP_01625196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma proteobacterium HTCC2080] gi|119461457|gb|EAW42547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma proteobacterium HTCC2080] Length = 297 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 24/129 (18%) Query: 267 PEIRT---VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL----------- 312 PEIR + +L N EA EA ++L+ K + EQG+S +++++ Sbjct: 137 PEIREASHILRLCTDNCDEASEAIETLQSLKNRL----EQGESFANLAIEFSQDPGSKTR 192 Query: 313 -GSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 G S+ D + D++F++ + G F+ ++ FG+ I + +I S T SF+E Sbjct: 193 GGRLSQGIERDAENVDQVVRDALFAIPEVGGFSDIVRSRFGFHILKLESITASRTRSFEE 252 Query: 367 VKKDIANQM 375 V+ + ++ Sbjct: 253 VRPALVAEI 261 >gi|82703233|ref|YP_412799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] gi|82411298|gb|ABB75407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] Length = 265 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 18/138 (13%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S++EL EYE K + E + ++ ++EA + LKKG KF +LA E+ Sbjct: 117 VSDEELHKEYETVKTQMGDKEYK-AHHILVATEEEAKDIIAKLKKGAKFDKLAGEKS--- 172 Query: 308 SDISLGSFSK----EYIPDVS----LADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIK 357 + GS SK ++ P S A+++ L KG T PV FG+ + + +++ Sbjct: 173 --LDTGSKSKGGELDWSPAASYVQPFAEALTKL-HKGQLTDQPV-KTPFGWHVIRLDDVR 228 Query: 358 PSFTVSFQEVKKDIANQM 375 P F+E+K+++A ++ Sbjct: 229 PLKIPPFEEIKQNLAQRV 246 >gi|331005209|ref|ZP_08328603.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC1989] gi|330420991|gb|EGG95263.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC1989] Length = 635 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 17/242 (7%) Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + R Y+ L +P S+ ++ ++ K+ Y + E I YI +V EK I Sbjct: 187 QTRDFSYVTLPLGELPQEMTVSDEEISTRYDLNKNQYLSTEEVAIEYIELNVASIEKDIT 246 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKKGKKFIQLAEE 302 I+++ +Q +Y+ Y + R ++ EA + + L G F LA E Sbjct: 247 ITDEAIQQQYDSIVASYNATTQREAAHIMIEGDNEAAQQKIISVKEQLASGADFSALASE 306 Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYV--IAHVSN 355 G + +LG + + P+ + +++ SL + V I G+ ++ IA Sbjct: 307 YSDDFGTRDNGGNLGVSAGDGFPE-AFEEALLSLTEGQVSEAVEIDGATHFIKLIALTEK 365 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 P+F Q++K I ++++ +A E+ D + LEE ++DE++ I +I Sbjct: 366 TAPTF--DSQKIK--IESELKRAQAEEQFILDLQTLEELAYNAENLDEVAAELGISAIKT 421 Query: 416 PL 417 L Sbjct: 422 GL 423 >gi|285808215|gb|ADC35749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium 293] Length = 392 Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 12/151 (7%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGK 294 E E K +S+ E +AEY+KNK +Y P T+ ++V + A++ + + G+ Sbjct: 151 RELEGKTSVSDAEARAEYQKNKAEYDKPGTVTLREIVVGGEDAATRARAEDVAKRARAGE 210 Query: 295 KFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA+ + S + G + + PD LA +F+L K G PV G+ I Sbjct: 211 DFAALAKSTSSAASAKNGGELGQLSHTDLAPD--LARIVFALPKGGVTDPVPVAK-GFRI 267 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 V + V F++VK +I ++ KAS Sbjct: 268 LKVEDRSEGGLVPFEQVKAEITRKLVQEKAS 298 >gi|307571805|emb|CAR84984.1| protein export peptidyl-prolyl isomerase protein [Listeria monocytogenes L99] Length = 279 Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ YE + P+I TV ++ ++ +A E Q L Sbjct: 91 QLKYNLLVQKATEANTDTSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKL 144 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 145 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 204 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-----NQMRITKASEKVKEDYK 389 Y I + KP+ +F++ KK + +Q+ + +K++YK Sbjct: 205 YHIIQMD--KPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 249 >gi|119385325|ref|YP_916381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus denitrificans PD1222] gi|119375092|gb|ABL70685.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus denitrificans PD1222] Length = 279 Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPN 279 K + A E ++ +Y+ V EK E EL+A Y++ P + ++ Sbjct: 86 KRDAVALEIEKRAYLAGSVLEKIAAAEPDEAELKAAYDQAFGGQAEPAVEYNAAHILVKT 145 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKG 336 ++EA+ + L +G F LAEE+ S + LG F E + + A+++ +L +KG Sbjct: 146 REEAEAIAKQLAEGADFGALAEEKSTDNSGPNKGDLGWFQPEQMVE-PFAEAVKAL-EKG 203 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + FG+ + +++ + +F+E+K+ +A Q+R K +++ KR+ E Sbjct: 204 QVSEPVETQFGWHVIKLNDTREVTPPAFEEIKEQLAVQVRRDKVQAEIE---KRVTE 257 >gi|313617659|gb|EFR89948.1| foldase protein PrsA [Listeria innocua FSL S4-378] Length = 291 Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G KF LA+E +D + + P Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYS---TDTATKENGGQLAPF 187 Query: 322 -----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----- 371 D + + ++L KGD + + +GY I + KP+ +F + KK + Sbjct: 188 GSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFDKDKKAVKESYL 245 Query: 372 ANQMRITKASEKVKEDYK 389 A+Q+ + +K++YK Sbjct: 246 ASQLTTENMQKTLKKEYK 263 >gi|16801386|ref|NP_471654.1| hypothetical protein lin2322 [Listeria innocua Clip11262] gi|46396988|sp|Q929F4|PRSA2_LISIN RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|16414834|emb|CAC97550.1| lin2322 [Listeria innocua Clip11262] Length = 291 Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G KF LA+E +D + + P Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYS---TDTATKENGGQLAPF 187 Query: 322 -----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----- 371 D + + ++L KGD + + +GY I + KP+ +F + KK + Sbjct: 188 GSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFDKDKKAVKEAYL 245 Query: 372 ANQMRITKASEKVKEDYK 389 A+Q+ + +K++YK Sbjct: 246 ASQLTTENMQKTLKKEYK 263 >gi|313622749|gb|EFR93091.1| foldase protein PrsA [Listeria innocua FSL J1-023] Length = 291 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G KF LA+E +D + + P Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYS---TDTATKENGGQLAPF 187 Query: 322 -----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----- 371 D + + ++L KGD + + +GY I + KP+ +F + KK + Sbjct: 188 GSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFDKDKKAVKESYL 245 Query: 372 ANQMRITKASEKVKEDYK 389 A+Q+ + +K++YK Sbjct: 246 ASQLTTENMQKTLKKEYK 263 >gi|73541086|ref|YP_295606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] gi|72118499|gb|AAZ60762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] Length = 264 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S+DEL+ +Y+K K ++ + + V ++ + +A +K G KF +A+ K Sbjct: 110 SDDELRKQYDKIKSQFGNGKEYHVRHILVEKEADAKAIIAKIKGGAKFEDMAKASSKDPG 169 Query: 309 DISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362 + G + S Y+P+ S A + KKG T + FG+ I + + + + Sbjct: 170 SAANGGDLDWANSGSYVPEFSAA---MTTLKKGQMTDTPVKTQFGWHIIELVDTRDAKIP 226 Query: 363 SFQEVKKDIANQM 375 SF+EVK + M Sbjct: 227 SFEEVKPQLMQMM 239 >gi|312796410|ref|YP_004029332.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI 454] gi|312168185|emb|CBW75188.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia rhizoxinica HKI 454] Length = 260 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S+DE++A YE+ ++ + ++ P++++A E +K G F LA++ K Sbjct: 112 SDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKELIAKIKAGASFEDLAKQHSKDPG 171 Query: 309 DISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362 G + + Y+P+ AD+ L KKG+ T +H FG+ I + + + Sbjct: 172 SAKNGGDLDWANPQSYVPE--FADAAGKL-KKGEVTSTPVHTQFGWHIIRLDDSRAIQPP 228 Query: 363 SFQEVKKDIANQM 375 +VK +A Q+ Sbjct: 229 PLDQVKAQVAQQL 241 >gi|149916816|ref|ZP_01905318.1| hypothetical protein PPSIR1_05628 [Plesiocystis pacifica SIR-1] gi|149822533|gb|EDM81922.1| hypothetical protein PPSIR1_05628 [Plesiocystis pacifica SIR-1] Length = 269 Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%) Query: 245 KIEISND--ELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ-LA 300 + E++ D L+A YE+ + EK+F PE R +E + FP +EA+ A LK G+ I +A Sbjct: 110 RAEVAADTEALRARYERERDEKFFEPERRRIEAVYFPTFEEAEGALARLKSGEVDIAGVA 169 Query: 301 EEQGKSL 307 EQG+ + Sbjct: 170 AEQGRDV 176 >gi|304439703|ref|ZP_07399603.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371809|gb|EFM25415.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 261 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 15/154 (9%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 +EI++++L+ Y+ +K+ + + ++ ++ A E + L G F +LA+E Sbjct: 102 VEITDEDLKNYYDNHKDNFKNNASVEASHILVEDESVAKEIKEKLNNGADFKELAKEYSN 161 Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 G +L + G KE+ D+ F++ G+ + + FGY I V+N Sbjct: 162 CPSKENGGNLGVFTKGQMVKEF------EDAAFNMGV-GEISDPVKTQFGYHIIKVTNKN 214 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +F+E K DI +R K + K +RL Sbjct: 215 DESVRTFEEAKPDIERLVRREKEKDLYKHTVERL 248 >gi|149194292|ref|ZP_01871389.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter mediatlanticus TB-2] gi|149135467|gb|EDM23946.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter mediatlanticus TB-2] Length = 292 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 26/214 (12%) Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL-FDVHEKEK--KIEISNDEL 253 L +HV + LT + +K K P++K L D+ K++ I+IS+ E Sbjct: 77 LPAQHVKKLVKDYADTLTVYEKKAKSIENTPQFKAAKMKLAVDMWLKKEFDNIKISDKEA 136 Query: 254 QAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADEAFQSLK--KGK----KFIQLAEEQGK 305 +A YEKNK+ +F +P+I+ LV ++K A + LK KGK KF +LA++ Sbjct: 137 KAFYEKNKDVFFKSTPQIKARHILV-KDEKLAKKLINELKGLKGKALEEKFAELAKKYSI 195 Query: 306 SLSDIS---LGSFS-KEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPS 359 S + LG FS K+ +P+ + A K G+ T PV FGY I V K + Sbjct: 196 GPSKVQGGELGWFSPKQMVPEFAKAAESL---KPGEITLKPV-KTRFGYHIILVEGKKSN 251 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + +++VK I ++ ++K+K++ + L++ Sbjct: 252 TYIPYEKVKDQIIGYLK----NQKLKKELETLKK 281 >gi|157164574|ref|YP_001466661.1| glutamate-1-semialdehyde 2,1-aminomutase [Campylobacter concisus 13826] gi|112800465|gb|EAT97809.1| putative peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter concisus 13826] Length = 485 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 6/157 (3%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++K + V I++ + FV F+ WG D + + +++V VG + + Sbjct: 1 MLSWMQKHKKYLVVTIWVSTIAFVGAGFVGWGAYD--LNSNRATSVAKVGHRNISVQELQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + E+A +GL+ L + L F +DIGL + V Sbjct: 59 QKYDRLYQYYNNVFEGKLTQEKAEELGLENAALQAAIQENLLLNFADDIGLSVNKDDVLK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 I P F KD F +++ L R IN ++ D+ Sbjct: 119 YIIVDPTFQ-KDGVFDKNLYYDVLRRARINPTDFEDN 154 >gi|313607374|gb|EFR83765.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208] Length = 257 Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 13/137 (9%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKE 318 K + P+I TV ++ ++ +A E Q LK G KF LA+E + D L F Sbjct: 96 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENDGQLAPFGPG 154 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-----N 373 + D + + ++L KGD + + +GY I + KP+ +F++ KK + + Sbjct: 155 KM-DPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTFEKDKKAVKASYLES 211 Query: 374 QMRITKASEKVKEDYKR 390 Q+ + +KE++K+ Sbjct: 212 QLTTENMQKTLKEEFKK 228 >gi|227499517|ref|ZP_03929624.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC 35098] gi|227218396|gb|EEI83647.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC 35098] Length = 360 Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 69/131 (52%), Gaps = 9/131 (6%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S+DE++ +E+NK+++ + ++ +++ A E L G+ F +LA+E K Sbjct: 163 VSDDEIKKYFEENKDQFTKVD---ASHILVDDEETAKEIKAKLDNGEDFAKLAKEYSKDT 219 Query: 308 SDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + LGSF K + ++ FS+ K+G+ + + FGY I +++I S+ S Sbjct: 220 ASAKNGGELGSFGKGQMV-KEFEEAAFSM-KEGEISNPVKSQFGYHIIKINSISDSYEKS 277 Query: 364 FQEVKKDIANQ 374 +E+ K I ++ Sbjct: 278 KEEITKKIKDK 288 >gi|149182999|ref|ZP_01861454.1| post-translocation molecular chaperone [Bacillus sp. SG-1] gi|148849283|gb|EDL63478.1| post-translocation molecular chaperone [Bacillus sp. SG-1] Length = 324 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 20/161 (12%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 IE+S DELQ Y+ + PEI V ++ +++ A E Q L G KF LA+E Sbjct: 129 IEVSEDELQEYYDN-----WKPEIE-VRHILVDDEETAKEVKQKLADGAKFEDLAKEYSN 182 Query: 303 -QGKSLSDISLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 G + + SLG E ++P+ S A K G + + +G+ I V++ K Sbjct: 183 DPGSAENGGSLGWVDYEGRQNFVPEFSEA---LEKLKTGKVSEPVKTQYGFHIIEVTDKK 239 Query: 358 PSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLAL 397 SF E+K ++ ++++K + EK+++ K + E L Sbjct: 240 EKN--SFDEMKDELEKSLKLSKVTPEKIQQAMKEIVEDAGL 278 >gi|312131757|ref|YP_003999097.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella byssophila DSM 17132] gi|311908303|gb|ADQ18744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella byssophila DSM 17132] Length = 709 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 36/263 (13%) Query: 280 QKEADEAFQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +K+A E K G F LA + G + LGSF + + D+IFS + G Sbjct: 371 KKKALEILAQAKSGMDFAFLARQFGSDGTAQQGGDLGSFKNDGTMVKAFEDAIFSFSGTG 430 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQMRITKASEKVKEDYKRL 391 ++ FGY I V+ K + + K++ + + KASE Sbjct: 431 VLPNLVTTDFGYHIVKVTEPKSNLKYKLATITKELHVGDEGSNLVFQKASE--------- 481 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDP 449 L S I E+ D +V F ++V+ V + +L+ +GKD Sbjct: 482 -----LMNSAKSIKDLEEAAKKDNSIVLFNAENVQPGATVVNTLRNARELVQWAYGKDAK 536 Query: 450 LSK--DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 + K D L D +Y+ +K + D K E D+K + A + K +L+ Sbjct: 537 VGKVADRVFVLED-NYVVAALKSAADKNDPKAE--------DFKDLIAARIRNEKKAELI 587 Query: 508 LEYSKEGK-NFRDIGKNLGASLL 529 + +GK +F +I K GA L Sbjct: 588 TKKLGDGKGSFEEIAKKYGAGAL 610 >gi|312860326|gb|ADR10202.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium enrichment culture clone F5-11] Length = 290 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E KKIEI +D AEY K+F ++R Q+V ++ A LK G F QLA Sbjct: 135 EASKKIEI-DDAAIAEYYAQLPKHFEYDLR---QIVTADEASARAVIAKLKDGADFAQLA 190 Query: 301 EEQGKSLSDI---SLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356 E ++ SLG E +P ++AD++ ++ + G FT + G+ + V + Sbjct: 191 SEMSQAPEAANGGSLGWLMAEQLP-TTIADAVRAM-QAGTFTDQPLQTPQGWHVVRVEGV 248 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + V + + I ++R K + + + Sbjct: 249 RQLEQVPLETARAWIEGELRNQKIQQMIDQ 278 >gi|297521498|ref|ZP_06939884.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 152 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYV 349 KG F LA+E+ + G ++ D ++ D + L +KG + VI S G++ Sbjct: 2 KGGDFAALAKEKSADIISARNGG-DMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFL 60 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 I + +I+P+ S EV+ DIA +++ KA Sbjct: 61 IVRLDDIQPAKVKSLDEVRDDIAAKVKHEKA 91 >gi|39995469|ref|NP_951420.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39982232|gb|AAR33693.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] gi|307634691|gb|ADI83192.2| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter sulfurreducens KN400] Length = 297 Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 26/191 (13%) Query: 221 KDNY-RAPEYK-RISYILFDVHEKE-------KKIEISNDELQAEYEKNKEKYFSPEIRT 271 KD + R PE + R+ Y + D +E +++S+ EL+A Y+++ + + PE Sbjct: 83 KDGFDRKPEVRERLGYFVDDFLAREYLTKVVIAGVKVSDAELRAYYQEHAKDFVMPEQAI 142 Query: 272 VEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319 V + + + + + LKKG+ F +A E + + G Sbjct: 143 VRHIFIGFTDAADSQAKAAAKTKTEGVLERLKKGEDFAAVAAEASEDIESAKEGGLLGAI 202 Query: 320 IPDVSLAD----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 P + ++ ++F+L K G+ + ++ FGY I V K + F EVK + +++ Sbjct: 203 TPGQTNSEEFEKAVFAL-KAGEMSGLVESPFGYHIVKVDERKEKRALPFDEVKDALRSKL 261 Query: 376 RITKASEKVKE 386 + +K++E Sbjct: 262 QGEAEQKKLRE 272 >gi|226309756|ref|YP_002769650.1| hypothetical protein BBR47_01690 [Brevibacillus brevis NBRC 100599] gi|226092704|dbj|BAH41146.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 300 Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 12/154 (7%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + ISY + K + I ++EL Y ++Y P + Q+V +QKEA++ Sbjct: 122 QEISYQILLQTLATKDMTIKDEELINVYNSRSDRYTRPMQVRLGQIVVASQKEAEQVLAD 181 Query: 290 LKKGKKFIQLAEEQGKSL--------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 LK G F +A + +S+ D+ S +PD A I +K ++ Sbjct: 182 LKNGADFQTIA--KARSIDADTAVNGGDVGWVSIKDNRLPDE--AKPIVEKLEKDKYSEA 237 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 I YVI + + + +F+EVK ++ +M Sbjct: 238 IKIQDQYVIYQLRERREASQRTFEEVKDELRREM 271 >gi|116873652|ref|YP_850433.1| prsA protein, export protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742530|emb|CAK21654.1| prsA protein, export protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 291 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y L E + S+ L+ Y K + P+I TV ++ ++K+A E Q L Sbjct: 105 QLKYNLLVQKATEANTDTSDKALKEYY-----KTWQPDI-TVSHILVADEKKAKEVEQKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G KF LA+E + G + P D + + ++L KGD + + +G Sbjct: 159 KDGAKFSDLAKEYSTDTATKENGGQLAAFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371 Y I + +P+ +F + KK + Sbjct: 219 YHIIQMD--EPATKTTFDKDKKAV 240 >gi|186475788|ref|YP_001857258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] gi|184192247|gb|ACC70212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] Length = 259 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 14/144 (9%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 KK + ++ E++A+Y++ ++ E + ++ N+++A + +K G F LA++ Sbjct: 107 KKNQPTDAEVKAKYDELVKQIGGKEYH-LHHILVENEQQAKDLIAKIKGGASFEDLAKQF 165 Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSN 355 GK+ D+ S K Y+P+ + A +KG T PV H FG+ I V + Sbjct: 166 SKDPGSGKNGGDLDW-SDPKAYVPEFAAAAEKL---QKGQMTDEPV-HTQFGWHIIRVDD 220 Query: 356 IKPSFTVSFQEVKKDIANQMRITK 379 ++ + F++VK IA QM+ K Sbjct: 221 VRQTPPPPFEQVKAQIAQQMQQEK 244 >gi|315637996|ref|ZP_07893181.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21] gi|315481844|gb|EFU72463.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21] Length = 273 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 +L +V++ + + I++ +++ YEKNKE++ P + ++ +++EA LK Sbjct: 97 LLLNVYQNKIMQDIKVDAAKVKEAYEKNKEQFVKPARVKAKHILVTSEQEAKNIINELKG 156 Query: 293 ------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV- 341 KKF ++A + G + + LG F + + D+ FSL KKG+ T Sbjct: 157 LKDKELEKKFTEIARTKSIDTGSAANGGDLGWFDESTMVK-PFTDATFSL-KKGEITKTP 214 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + +FGY I + + V+F++ K I N+++ Sbjct: 215 VKTNFGYHIILKQDSRAKEQVAFKDAKMGIENRLK 249 >gi|86159490|ref|YP_466275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776001|gb|ABC82838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 587 Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 18/141 (12%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI-------- 297 + I + +L+A Y+ +++++ + + ++QL FP+ K A A + L +G F Sbjct: 423 VSIKDADLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRAAERLARGTDFKWLKANAEG 482 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF---GYVIAHVS 354 QLA Q ++L D S + +P+ LA ++ S A+ GD+ +H GYV+ VS Sbjct: 483 QLAPAQ-RAL-DFEGQLLSAKGLPE-DLAGALAS-AQVGDYR--MHQGPRGQGYVVLVVS 536 Query: 355 NIKPSFTVSFQEVKKDIANQM 375 P ++E +KDI ++ Sbjct: 537 RTDPQVQ-PYEEARKDIQKKL 556 >gi|329893793|ref|ZP_08269881.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088] gi|328923516|gb|EGG30830.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088] Length = 309 Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust. Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 36/167 (21%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S+ +++ Y N+ ++++PE T + FP ++EAD QLA + G + Sbjct: 151 LSDQDIRDYYSNNQAQFWAPERYTFSHVFFPREREAD-----------MRQLAAKLGTEI 199 Query: 308 SDISLG-SFSKEYIP----------------DVSLADSIFSLAKK-GDFTPVIHGSFGYV 349 D ++ ++P + +L + G++ I +FG+ Sbjct: 200 QDFDQALNYGAPFLPGYHFTRQTAEQLARQFGAGFVSNFLALPPRVGEWQSPIASTFGWH 259 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-------NQMRITKASEKVKEDYK 389 + + ++ T+S E +KDI M ++ A +++DY+ Sbjct: 260 LVWLQEVETGRTLSLDEAQKDIVATLQRERRDMALSDAKAVLRQDYE 306 >gi|206889870|ref|YP_002249039.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741808|gb|ACI20865.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 292 Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 86/161 (53%), Gaps = 10/161 (6%) Query: 225 RAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKE 282 R E+K+I+ I + ++ K ++ ++ + + YEKNK+ + P E+R + Q+V N+ E Sbjct: 91 RMEEFKKITLINMLLEQEIKTLQQVTEQDAKEYYEKNKDMFIKPVEVR-LSQIVVKNEDE 149 Query: 283 ADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 A + ++ + KG++F ++A+E + S +G F K + + + + FSL K Sbjct: 150 AKKVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQL-NPQIENVAFSLRKGQVS 208 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 P+ Y+ ++++K + + F+++K + Q++ K Sbjct: 209 MPLTFKGELYIF-KITDVKGN-PIDFEQIKGQLIEQLKAKK 247 >gi|325479410|gb|EGC82506.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus prevotii ACS-065-V-Col13] Length = 248 Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 15/154 (9%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +H+ ++I++ + E++A YEKNKE P + ++ + +EA + + +++G +F Sbjct: 83 YAMHKIFEEIKLDDSEIKAYYEKNKENLNPPLLYEASHILVKDLEEASKIKKEIEEGLEF 142 Query: 297 IQLA--------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 + A ++ G SL G KE+ + DSI + G + + FGY Sbjct: 143 SEAAKKYSIDPSKDNGGSLGKFPKGVMVKEFQEGL---DSI----EVGQISEPVKSQFGY 195 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + NI+ T S+ E+K + ++ + K E Sbjct: 196 HLIKLENIENVETPSYDEIKDQVKQRVLMIKRQE 229 >gi|121607668|ref|YP_995475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] gi|121552308|gb|ABM56457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] Length = 374 Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 15/112 (13%) Query: 291 KKGKKFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 K GK F QLA++ QG L ++ GS +P A + +L + GD + V Sbjct: 246 KAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGS----TVPPFEQA--LKALKEPGDLSEV 299 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + SFGY I + +P+ F E++ + Q R E +D +RL+E Sbjct: 300 VETSFGYHIIRLEERRPAGLRGFDEMRDPLRLQARNALLREARAKDAQRLQE 351 >gi|313636759|gb|EFS02412.1| foldase protein PrsA [Listeria seeligeri FSL S4-171] Length = 167 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G+KF LA+E + G + P Sbjct: 23 KTWQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPG 81 Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374 D + + ++L KGD + + +GY I + +P+ +F + KK + +Q Sbjct: 82 KMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMD--EPATKTTFDKDKKAVKESYLQSQ 139 Query: 375 MRITKASEKVKEDYK 389 + + +K++YK Sbjct: 140 LTTENMQKTLKKEYK 154 >gi|292493646|ref|YP_003529085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] gi|291582241|gb|ADE16698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] Length = 308 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 D+ F+L K GD + + FG + + +KPS +SF+EVK + Q+R Sbjct: 220 DAAFALTKPGDISKPVETPFGVHLIKLLEVKPSRQLSFEEVKGKLMRQVR 269 >gi|163737941|ref|ZP_02145357.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis BS107] gi|161388557|gb|EDQ12910.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis BS107] Length = 283 Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 18/190 (9%) Query: 210 NAVLTQWFE----KYKDNYRAPEYKRISY-------ILFDVHEKEKKIEISNDELQAEYE 258 +A+L Q + K + N P+Y +S + DV EK + S+++L+ Y+ Sbjct: 67 DAILDQLIQQTSLKQELNGEVPKYVALSLENEARSLLAADVIEKVMENAASDEDLRTAYD 126 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSF 315 + + ++ +++A + L G F LA E+ S + LG F Sbjct: 127 EKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPSGPNGGELGWF 186 Query: 316 SK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 SK +P A + GD + + FG+ + +++ + S +F EV++++A Q Sbjct: 187 SKGRMVPQFEEAVLVMG---AGDVSDPVQTQFGWHVIKLNDRRTSAAPTFDEVREELATQ 243 Query: 375 MRITKASEKV 384 MR ++V Sbjct: 244 MRQEAVEDRV 253 >gi|217076606|ref|YP_002334322.1| basic membrane protein, putative [Thermosipho africanus TCF52B] gi|217036459|gb|ACJ74981.1| basic membrane protein, putative [Thermosipho africanus TCF52B] Length = 333 Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 13/144 (9%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 LF+V K+ + S++EL Y+K+ ++Y +P T+ + F N+K A+ + G+ Sbjct: 161 LFNVVTKDATV--SDEELMDYYQKHIDEYSTPTQYTLSLIAFDNEKVANAVKTKIVSGET 218 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIP-DVSLADSIFSL---AKKGDFTPVIHGSFGYVIA 351 F +A E G + F E I D + +++ A +G I Y I Sbjct: 219 FDSIASEYG-------ISQFKYENIAEDTTFPGKLWNYIKNAPQGALLGPIDVDEKYYIF 271 Query: 352 HVSNIKPSFTVSFQEVKKDIANQM 375 V N+ P + F EV+++I+N + Sbjct: 272 KVENVVPMQSKKFDEVREEISNMI 295 >gi|302873039|ref|YP_003841672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] gi|307688832|ref|ZP_07631278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] gi|302575896|gb|ADL49908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] Length = 247 Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 13/162 (8%) Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 +LF + E K +EI++ ++ Y+ N+E + PE+ T ++ ++++A E ++ Sbjct: 79 MLFPIAADEVTKDVEIADQDVADFYKNNRELFKKPELATASHILVDSEEKAQEIKAEIEA 138 Query: 293 GKKFIQLAEEQGKSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F A + S+ LG F K + +P+ + K D PV FGY Sbjct: 139 GLSFADAAAKYSTCPSNQRGGDLGQFQKGQMVPEFEEVAFTLPINKLSD--PV-KTQFGY 195 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQM----RITKASEKVKE 386 + V++ +P F EV+ I +M R K EKV E Sbjct: 196 HLIKVTDFQPEMIQDFDEVQVAIKEKMLQDRRQYKFLEKVDE 237 >gi|224373001|ref|YP_002607373.1| hypothetical protein NAMH_0972 [Nautilia profundicola AmH] gi|223589838|gb|ACM93574.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 478 Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust. Identities = 87/394 (22%), Positives = 164/394 (41%), Gaps = 55/394 (13%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 W+A I + F+ WG F SSTV + +V + +++ Sbjct: 17 WIATIAFI--GAGFVGWGQ----FQFGRKSSTVAKIKDTEVSIQDVQEVYNNLFQEKNKQ 70 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 +G ++ A +GL K+ D + L Q+ +D+G+ E+A+ L + KD Sbjct: 71 LGGTLDDATAEKMGLKKQAFDMAIQQGILRQYAKDLGMYVTD----EEVAKQVLQYFKDK 126 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 K ++ L + G K++ K L ++ ++PS L + + Sbjct: 127 K----TYLMYLKQTGQKAKDFEAKLRKQLLIQKLLTAL--HIKPSKTLQLTFASALYNSD 180 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 +++ ++N V + S + ++EK K Y++P +I+ + + K + N Sbjct: 181 NLEIKIINKSSVK--VNLSEDEIKAFWEKNKQKYQSPTMYKIAIVKTPI----KGVATEN 234 Query: 251 DELQAEYEKNKEKYFSP--EIRTVEQ---------LVFPNQKEADEAFQSLKKGKKFIQL 299 D L+A Y +NK Y + EI T E+ L ++K+A A++ LK+G + +L Sbjct: 235 D-LKAFYNENKTNYRNDKGEILTYEEAKNQVKKDYLAKISKKDAIIAYKKLKEGAENYEL 293 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH-VSNIKP 358 ++L + + + IP A+ + L + G P + + Y+ A V IKP Sbjct: 294 ----------LTL-TINNKIIP----AEKMQKLIQTGYLKPFVDNN-EYISAKLVEEIKP 337 Query: 359 S---FTVSFQEVKKDIANQMRITKASEKVKEDYK 389 + + +V KD+ N + K KE K Sbjct: 338 KPLPYEEAKAQVTKDLLNIKTLQALENKAKEALK 371 >gi|91788447|ref|YP_549399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] gi|91697672|gb|ABE44501.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] Length = 261 Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 10/133 (7%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 +KK +++ +L+ EY+K E + LV + EA SLKKG KF +A++ Sbjct: 108 QKKNPVTDADLKGEYDKFAAANGGKEYKARHILV-EKEAEAKAIIASLKKGGKFEDIAKK 166 Query: 303 QGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNI 356 Q K + G + Y+P+ S +++ L KG T + FGY + V +I Sbjct: 167 QSKDPGSGAKGGDLDWANPSGYVPEFS--EALLKL-NKGQLTDAPVKSQFGYHVIRVDDI 223 Query: 357 KPSFTVSFQEVKK 369 + + SF+EVK Sbjct: 224 RNAQLPSFEEVKP 236 >gi|148262225|ref|YP_001228931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146395725|gb|ABQ24358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 345 Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 D Y+A +++ + E KI++ E++ Y+ N+ KY E Q+ F K Sbjct: 152 DQYKAQLKEQLERLRLMSQEVRAKIQVGEREMREYYDANRAKYGEEEFTRARQIYFKIDK 211 Query: 282 EADEA------------FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVS 324 +A E+ Q K GK F +LA ++ + LG+F + + IP++ Sbjct: 212 KAAESEITRVTAAAANVLQEAKSGKDFAELAKKYSDDPAAAKDGGELGTFKRGDMIPEIE 271 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 A K G+ + ++ G I + F+EVK +I + Sbjct: 272 RA---LDTMKPGEISDLVRTPAGIHIIKLEERTKGKAKPFEEVKAEIED 317 >gi|108760198|ref|YP_628739.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622] gi|108464078|gb|ABF89263.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622] Length = 349 Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 9/143 (6%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++ ++ +EL+A Y +++ + PE Q+V EA LK GKKF LA Sbjct: 174 RVAVTEEELRAWYGAHEKDFHEPEQVHAAQIVVKGLDEARRLQTQLKSGKKFADLARR-- 231 Query: 305 KSLSDIS-----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 SLS + LG F + +P + + +F L G + V+ +G+ + V KP+ Sbjct: 232 YSLSADAKVGGDLGFFPRGQMPP-AFDEVVFKLG-VGQVSDVVSTEYGFHLFRVLERKPA 289 Query: 360 FTVSFQEVKKDIANQMRITKASE 382 F EV+ + ++ K S+ Sbjct: 290 RKREFVEVRSLVEGKLLEQKRSQ 312 >gi|78222035|ref|YP_383782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] gi|78193290|gb|ABB31057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] Length = 339 Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 19/140 (13%) Query: 248 ISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEA-----------DEAFQSLKKGKK 295 I++DE + Y NK+K+ E +R LV +QK + + + LK G Sbjct: 172 ITDDEAKKFYNDNKDKFRREEAVRASHILVSADQKASPEEKKKAKEKAEALLKQLKGGAD 231 Query: 296 FIQLAEEQGKSLSDIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+++ S LG F K + +P+ + F+L K G+ + V+ FGY I Sbjct: 232 FAELAKKESSCPSSAQGGDLGFFGKGQMVPE--FEKTAFNL-KPGEVSDVVETQFGYHII 288 Query: 352 HVSNIKPSFTVSFQEVKKDI 371 ++ K + TV F+E K+ I Sbjct: 289 KLAEKKDAETVPFEEAKERI 308 >gi|241889428|ref|ZP_04776729.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379] gi|241863971|gb|EER68352.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379] Length = 312 Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 30/140 (21%) Query: 249 SNDE-LQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQL 299 +NDE L+ YEKNK +Y I +V+ PN +K+A++ + LK G F L Sbjct: 129 TNDEKLKESYEKNKHQYHLAHILISVKSESNPNGLSDEEAKKKAEDVLKKLKDGGDFATL 188 Query: 300 AEEQGKSLSDISLG-----------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 A+E ++ S G SF KE+ D+ ++L+ K + V+ SFGY Sbjct: 189 AKENSNDTANASNGGDLGWSSKEDNSFVKEF------KDAAYALS-KDKTSDVVKTSFGY 241 Query: 349 VIAHVSNIKPSFTVSFQEVK 368 I V + K S SF E+K Sbjct: 242 HIIKVLDEKDS---SFDELK 258 >gi|121604733|ref|YP_982062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] gi|120593702|gb|ABM37141.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] Length = 263 Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 10/133 (7%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 +KK +++ +L+AEY+K E + LV + EA SLKKG KF +A++ Sbjct: 110 QKKNPVTDADLKAEYDKFAAASGGKEYKARHILV-EKESEATAIIASLKKGGKFEDIAKK 168 Query: 303 QGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNI 356 Q K + G + Y+P+ + +++ L KG T + FGY + V +I Sbjct: 169 QSKDPGSGAKGGDLDWANPSSYVPEFT--EALLKL-NKGQMTDTPVKSQFGYHVIRVDDI 225 Query: 357 KPSFTVSFQEVKK 369 + + +F+EVK Sbjct: 226 RSAKLPAFEEVKP 238 >gi|254284437|ref|ZP_04959405.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B] gi|219680640|gb|EED36989.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B] Length = 294 Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 15/133 (11%) Query: 267 PEIRTVEQLVFPNQKEADEAFQ---------SLKKGKKFIQLAEEQGKSLSDIS----LG 313 PE R V ++ + D + S+ +G KF LA++ + + LG Sbjct: 136 PEKRKVAHILLTCEPGCDREAKKAQLKDFSASIAEGAKFADLAKQYSEDFASARNGGRLG 195 Query: 314 SFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 + + +++ A + F+L GD +P + FGY + + I+PS+TV F+ ++ I Sbjct: 196 TAIAKDDGNIAFAFRKASFALENPGDLSPPVETLFGYHLIVLEEIEPSYTVPFERLRDQI 255 Query: 372 ANQMRITKASEKV 384 + +E+V Sbjct: 256 VQLLEREWTNEQV 268 >gi|295700292|ref|YP_003608185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] gi|295439505|gb|ADG18674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] Length = 265 Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 13/140 (9%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 KK +S+D+L+A Y K K S + + V ++ +Q EA + L KG F LA+E Sbjct: 114 KKNPVSDDQLKAMYNDMKAKGGSTQYK-VRHILVKDQGEAKDIIAKLNKGASFGDLAKES 172 Query: 304 GKSLS-----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNI 356 + + D+ + SK P AD++ L KG++T PV G +G+ + V + Sbjct: 173 IDADTRYNGGDLGWITSSKVVKP---FADAVSHL-HKGEYTRMPVKTG-YGFHVIEVDDT 227 Query: 357 KPSFTVSFQEVKKDIANQMR 376 +P SF+++K + Q + Sbjct: 228 RPLQVPSFEDMKPMLYQQAQ 247 >gi|149181601|ref|ZP_01860095.1| post-translocation molecular chaperone [Bacillus sp. SG-1] gi|148850715|gb|EDL64871.1| post-translocation molecular chaperone [Bacillus sp. SG-1] Length = 313 Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 8/132 (6%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++ I++D++Q +E NK+ + E ++ N++ A E + L G+ F QLAEE Sbjct: 155 RVSITDDQVQEYFETNKDSFAQQEQVEASHILVENEETAKEVKEMLDNGEDFAQLAEEYS 214 Query: 305 KSLSDI----SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 S+ LG F+K E + + + FS+ + P I FG+ I V++ K + Sbjct: 215 VDTSNAGSGGELGYFAKGEMVAE--FEEKAFSMEIEEISNP-IETEFGFHIIKVTDKKEA 271 Query: 360 FTVSFQEVKKDI 371 ++ K++I Sbjct: 272 EEAVLEDHKEEI 283 >gi|312114549|ref|YP_004012145.1| hypothetical protein Rvan_1804 [Rhodomicrobium vannielii ATCC 17100] gi|311219678|gb|ADP71046.1| hypothetical protein Rvan_1804 [Rhodomicrobium vannielii ATCC 17100] Length = 301 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 48/196 (24%) Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 +V+ N VP PSN L WFE ++ NY +PE FDV Sbjct: 103 VVMGNLVVPT---PSNDELKGWFESHRANYDSPER-------FDV--------------- 137 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314 ++F +++T NQK+ + +++++ Q +Q +S ++S + Sbjct: 138 -------SQFFVADLKT------GNQKQVSDLLETVREA--VPQPYTDQVRSYRNLSPEN 182 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----D 370 S+ + D + A LA + V+ G+ IA V + P+ F EVK D Sbjct: 183 LSQVFGSDFAAA----LLANRDTTWRVLQSKQGWHIARVDALHPAVPAVFDEVKHIVKAD 238 Query: 371 IANQMRITKASEKVKE 386 R KA E +++ Sbjct: 239 WEAAQRRQKALEAIRD 254 >gi|313632264|gb|EFR99323.1| foldase protein PrsA [Listeria seeligeri FSL N1-067] Length = 295 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G+KF LA+E + G + P Sbjct: 132 KTWQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPG 190 Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374 D + + ++L KGD + + +GY I + +P+ +F + KK + +Q Sbjct: 191 KMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMD--EPATKTTFDKDKKAVKESYLQSQ 248 Query: 375 MRITKASEKVKEDYK 389 + + +K++YK Sbjct: 249 LTTENMQKTLKKEYK 263 >gi|312879532|ref|ZP_07739332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas paucivorans DSM 12260] gi|310782823|gb|EFQ23221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas paucivorans DSM 12260] Length = 297 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ + L+ Y+ +++++ E V ++ ++ A +A ++ G F + A EQ + Sbjct: 132 DLGDQTLKRYYDAHRDQFVQAEAVHVRHILTEDEASARKALLAVLGGADFAKTAAEQSRD 191 Query: 307 LSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + G + P + D +FSL K PV FG+ + V + + + Sbjct: 192 KATAERGGDLEWVERGQTPK-AFEDLVFSLRKDAVGGPV-KTDFGWHVVQVLEKRAARAL 249 Query: 363 SFQEVKKDIANQMRITKASEKVK 385 SF+E K ++A +++ + E +K Sbjct: 250 SFEEAKGEVAQRLQRSYLEETLK 272 >gi|289435560|ref|YP_003465432.1| prsA protein, protein export protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171804|emb|CBH28350.1| prsA protein, protein export protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 295 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G+KF LA+E + G + P Sbjct: 132 KTWQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPG 190 Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374 D + + ++L KGD + + +GY I + +P+ +F + KK + +Q Sbjct: 191 KMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMD--EPATKTTFDKDKKAVKESYLQSQ 248 Query: 375 MRITKASEKVKEDYK 389 + + +K++YK Sbjct: 249 LTTENMQKTLKKEYK 263 >gi|94502167|ref|ZP_01308665.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65] gi|94425692|gb|EAT10702.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65] Length = 608 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 67/385 (17%), Positives = 153/385 (39%), Gaps = 14/385 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ A+I + ++ + F ++G+ + G V +++ + Sbjct: 1 MLQAIRDGSKGIAARIIVGLIILTFALFGIESIVALGGGEDAPAEVNGEEITLLEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + ++ G + L + + +L+ L Q + G+ + I Sbjct: 61 NAQKTRLQRQFGENFDPAMFDENLLRQAAVRSLIDQELLAQAATESGVYISDQDIDRLIV 120 Query: 121 RSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 +SP F +G + ++D+ + + G Y + + + V + G ++L Sbjct: 121 QSPNFQVNGAFDAATYDLTIRSM---GFTRMTYREAVRESIKTQQVQSAWQGTEFATDLE 177 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 +Q + RS+ Y + + S+ + ++E + E + Y++FD Sbjct: 178 KEQLSLLENQIRSIKYKEYKSDNFKESVQLSDEDIQSFYEANDSRFMTTESVIVDYVIFD 237 Query: 239 VHEKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKG 293 + +++ ++ DE+Q Y+ +E + E R ++ EA EA L +G Sbjct: 238 KEKLAEQVIVTEDEIQERYDAMLQESQENKEYRVAHIMLLSADDEARKTLSEAKSKLGQG 297 Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + F LAE + + G F+ I + AD++ SL + G + ++ G + Sbjct: 298 ESFESLAERYSEDDTSKYAGGDLGFASATIYEPEFADAVLSL-EVGAVSDIVETRDGLHL 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQM 375 + + + ++ E+K I + Sbjct: 357 IKLVDTRQPEIAAYDEMKDTIEQNL 381 >gi|315283321|ref|ZP_07871537.1| foldase protein PrsA [Listeria marthii FSL S4-120] gi|313613042|gb|EFR86968.1| foldase protein PrsA [Listeria marthii FSL S4-120] Length = 292 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G KF LA+E + G + + P Sbjct: 132 KTWQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGKLEPFGPG 190 Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 D + + ++L KGD + + +GY I + +P+ +F + KK + Sbjct: 191 KMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--EPATKTTFDKDKKAV 240 >gi|309388299|gb|ADO76179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium praevalens DSM 2228] Length = 343 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 77/148 (52%), Gaps = 16/148 (10%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE--- 301 K+++S +E++ Y+ NK+++ S + V ++F +Q +A++ +K G F ++A+ Sbjct: 183 KVKVSEEEVKDYYQNNKKQFESEAEKKVSHILFDDQAKAEKVLAEIKAGADFAEMAKKHS 242 Query: 302 -----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVS 354 ++G +L +S + E D + D+ L + G+ T PV FG+ + V+ Sbjct: 243 TGPTADKGGNLGYVS----ANERGLDQTFRDAAMKL-EVGEITNEPV-KTQFGFHLIKVT 296 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 + + + F+EVK I + ++ K S+ Sbjct: 297 DYREAGVRDFEEVKAQIESNLKNKKKSQ 324 >gi|257066380|ref|YP_003152636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] gi|256798260|gb|ACV28915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] Length = 249 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 15/154 (9%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +H+ +++ I++DE++ YE+NKE P + ++ + + A++ ++KG F Sbjct: 84 YAMHKIFEEVNINDDEIKKYYEENKETINPPILYEASHILVKDLETAEKVRGEIEKGLSF 143 Query: 297 --------IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 I ++E G SL G KE+ + D+I + G+ + + FGY Sbjct: 144 EDAAKKYSIDPSKENGGSLGKFPKGVMVKEFQEGL---DAI----EVGEISAPVKSQFGY 196 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + ++N + T F+E+K + ++ + K E Sbjct: 197 HLIKLTNKENVETPKFEEIKSQVGQRLIMAKRQE 230 >gi|294788198|ref|ZP_06753441.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453] gi|294483629|gb|EFG31313.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453] Length = 292 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 41/247 (16%) Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRAPEYKRIS 233 L++ +AKR + +S DY A A+ Q +K +K N+ +Y+ Sbjct: 72 LVVQEAKRLKLD-KSSDYQA-------AEAEALKQAKAQGLDKQADFKQNW--ADYQNRL 121 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKK 292 +L K+ IS Q +Y + K +Y S EI+ E +V +A+ A L K Sbjct: 122 LMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEIQLGE-IVTNKPADAEAAINDLTK 180 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLA----KKGDF--TPVIHG 344 KKF +A++ S S + G EY+ PD+ +++ A KG F TPV G Sbjct: 181 KKKFSDVAKKYSMSKSSQTSGGIVPEYVALPDLKDGNNLVYQAVNGLSKGQFTKTPVKDG 240 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 + V+ +V++ + +F E+K I QM +E L+L ++D + Sbjct: 241 NVSLVL-YVNDKRAINVPTFNEMKASIVQQME---------------DEQLSL--AIDNL 282 Query: 405 SRREKIV 411 ++ KIV Sbjct: 283 GKKAKIV 289 >gi|289208891|ref|YP_003460957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] gi|288944522|gb|ADC72221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] Length = 289 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 +++EIS ++++AEYE+ E E R ++ ++ A E L G F +LAEE Sbjct: 130 EELEISEEDVEAEYERQVEYLRGTEYR-ARHILVEDEDSARELLAQLDDGADFAELAEEH 188 Query: 304 ----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 G + LG F+ + +P+ + A + D PV FG+ + + + + Sbjct: 189 SIDPGSAARGGDLGWFTPDGMVPEFAAATEALEPGETTD-APV-QSQFGWHLIRLDDTRE 246 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVK 385 EV+ +I + EK++ Sbjct: 247 VEVPPLDEVRAEIIEILESRAIQEKLE 273 >gi|222100637|ref|YP_002535205.1| Basic membrane protein [Thermotoga neapolitana DSM 4359] gi|221573027|gb|ACM23839.1| Basic membrane protein [Thermotoga neapolitana DSM 4359] Length = 329 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 12/151 (7%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGK 305 ++ +E Q Y +NKE Y P + ++ + + DEA ++KG+ F+++A + G Sbjct: 172 VTVEEAQNYYNQNKEAYRVPAAVHLYRISAEEKGKIDEALSRIRKGEDFLEVATKVATGG 231 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L I G K+ +S+ A +G G+++ V + S F+ Sbjct: 232 DLGWIEEGELEKDL-------ESVIFEAPEGAILGPFESKGGFMLYKVVEKRASSYKKFE 284 Query: 366 EVKKDIANQMRITKASEKVKEDY--KRLEEF 394 EVK++I N++ +++ ++ D+ K EEF Sbjct: 285 EVKEEIINKL-LSEKKAQIWNDWFNKTFEEF 314 >gi|291614457|ref|YP_003524614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] gi|291584569|gb|ADE12227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] Length = 261 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 7/185 (3%) Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFD-VHEKEKKIEISNDELQAEYEKNKEKYFSP 267 S A + +K D + E R S + V + K I +D LQ EYE K + + Sbjct: 74 SQAAVKNGLDKQPDVAQQLELARQSVLAGAFVQDYAKSHPIGDDVLQKEYEALKARVGNK 133 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VS 324 E + + ++ + EA + LKKG KF ++A+ Q K + G +P Sbjct: 134 EYK-LSHILVGTEDEAKKIAGQLKKGAKFAKIAKAQSKDPGSKNNGGDLGWAVPSNFVQP 192 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 A+++ L KKG+ + + +G+ I + + + +F+E+K ++ +++ +A +K Sbjct: 193 FAEAVAKL-KKGEVSAPVQTQYGWHIIKLEDTRELKVPTFEEMKPNLEKRLQ-QQAIQKE 250 Query: 385 KEDYK 389 ED + Sbjct: 251 IEDMR 255 >gi|317495597|ref|ZP_07953965.1| ppic-type ppiase domain-containing protein [Gemella moribillum M424] gi|316914411|gb|EFV35889.1| ppic-type ppiase domain-containing protein [Gemella moribillum M424] Length = 308 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 33/156 (21%) Query: 251 DELQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQLAEE 302 D+L+ YEKNK +Y I +V+ PN +K+A+E + +K G+ F LA+E Sbjct: 131 DKLKENYEKNKHQYHLAHILISVKSNSNPNGLSDEDAKKKAEELHKKIKDGEDFATLAKE 190 Query: 303 QGKSLSDISLG-----------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 ++ S G SF KE+ ++ ++L K + V+ SFGY I Sbjct: 191 NSNDTANASNGGDLGWSSKEDNSFVKEF------KEAAYALT-KDKVSDVVKTSFGYHII 243 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 V + K + +F E+K +A + A E VK+D Sbjct: 244 KVLDEKDA---TFDEMKATLAEKA----AEEAVKKD 272 >gi|291286199|ref|YP_003503015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] gi|290883359|gb|ADD67059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] Length = 318 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 22/152 (14%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE---- 301 I+IS +EL+A YE+ K + + ++ +V +K A A +K+G F ++AE Sbjct: 156 IDISEEELKAFYEEKKNELNADVSAHIQHIVTYEEKAAQNALGLIKQGIPFSEVAEKFSV 215 Query: 302 ----EQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 E G L I++ + PD+ +LA K G + ++ +GY I + Sbjct: 216 APEKEAGGDLGFINVNEY-----PDIFKEALA------LKTGQVSGIMKSDYGYHIFKLL 264 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 ++ +SF +KK + ++ K KV+E Sbjct: 265 EVQKKSGISFDTLKKKLYAELYGIKQENKVRE 296 >gi|325282949|ref|YP_004255490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus proteolyticus MRP] gi|324314758|gb|ADY25873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus proteolyticus MRP] Length = 652 Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 16/137 (11%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + +++++++LQA Y++ ++++ +P V + FP++++A AF+ +G F Q A Sbjct: 424 RNVKVTDEDLQAAYQERQQQFQTPASAVVSEATFPSREQA-LAFRQDWQGGDFTQAATAA 482 Query: 304 GKSLSDISLGSFSKEYIPDVSLAD-----SIF--SLAKKG--DFTPVIHGSFGYVIAHVS 354 G +S+ + PD L + SIF L G T ++ S G+ + V+ Sbjct: 483 GGIVSE------RGQVAPDTDLMEPSVLQSIFEGELRAVGSTSLTNIVQASDGWKVVAVT 536 Query: 355 NIKPSFTVSFQEVKKDI 371 +++ + EV+ + Sbjct: 537 DLQQGRVLPLDEVRTSL 553 >gi|225850985|ref|YP_002731219.1| ppic-type ppiase domain protein [Persephonella marina EX-H1] gi|225646600|gb|ACO04786.1| ppic-type ppiase domain protein [Persephonella marina EX-H1] Length = 325 Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 20/164 (12%) Query: 246 IEISNDELQAEYEKNKEKYFSP---EIRTVEQLVFPN--------QKEADEAFQSLKKGK 294 + +++ +L+ YEKNK+K+ P ++R + V P+ +++A +A++ +K+GK Sbjct: 153 VSLTDKDLKEYYEKNKDKFKEPASVKVRYIYIKVDPSDPKGREKAREKAKKAYKEIKEGK 212 Query: 295 KFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A LS I +G K P + + I+ L G + +I G I Sbjct: 213 DFGDVAYRYSDDLSRIKGGDIGYVHKGRFPK-QIEEEIYKLD-VGQVSKIIETDTGLHIV 270 Query: 352 HVSNIKPSFTVSFQEV----KKDIANQMRITKASEKVKEDYKRL 391 + + +P V ++E+ KK++ M+ K +E +K+ K L Sbjct: 271 KIEDKRPPRLVPYEEIKDKLKKELTEVMQERKFNELIKDAKKNL 314 >gi|169343240|ref|ZP_02864251.1| putative foldase protein PrsA [Clostridium perfringens C str. JGS1495] gi|169298538|gb|EDS80619.1| putative foldase protein PrsA [Clostridium perfringens C str. JGS1495] Length = 326 Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 89/178 (50%), Gaps = 13/178 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294 K +++++++ Q Y++NK+++ + + + + L+F N++EA +A+ ++ GK Sbjct: 149 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 208 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352 K+ E K +++ +LG E V D + L K+G+ + +I FGY +I Sbjct: 209 KYENNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKLIKTQFGYHIIQA 266 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + F EVK I ++ K SEK K D + ++ L + D++ KI Sbjct: 267 GATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 324 >gi|206603474|gb|EDZ39954.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp. Group II '5-way CG'] Length = 324 Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 10/112 (8%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DS 328 V+ +V Q+EA+ +L KG F +LA+ + + + S G K Y P ++ D+ Sbjct: 176 VDHIVVAKQEEAESIRDALLKGSSFGKLAKLESLGM-EASSGGRMKPY-PQGTMPPPFDT 233 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE----VKKDIANQMR 376 +F++ K G+ +PV+ S+GY + + P T+ F +KK + + R Sbjct: 234 VFTM-KPGEISPVLSSSYGYHLFRLEKFIPKHTLPFSMEKNWIKKKLTREKR 284 >gi|39997591|ref|NP_953542.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA] gi|39984483|gb|AAR35869.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA] Length = 571 Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 ++++ DEL+A YE +K +Y P + ++ + F +Q A A + L++G F E Sbjct: 409 VKVTEDELKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQGMDFKWFKENAEG 468 Query: 306 SLSDISLGSFSKEYIPDVSLA------DSIFSLAKKGDFTPVIH-GSFGYVIAHVSNIKP 358 + + G E +P V+L + + + A+ G++ F YVI V N+ P Sbjct: 469 HVDAKAAGVLQFEDVP-VTLKTLPEGLNKVITGAQTGEYRVYSDPNGFTYVIL-VRNVIP 526 Query: 359 SFTVSFQEVKKDI 371 SF EV+ I Sbjct: 527 EQVQSFPEVEATI 539 >gi|308275078|emb|CBX31677.1| hypothetical protein N47_E51890 [uncultured Desulfobacterium sp.] Length = 316 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 19/137 (13%) Query: 269 IRTVEQLVFPNQKE----ADEAFQSLKKGKKFIQLAEE--------QGKSLSDISLGSFS 316 IRT + P ++E A++ + +K+GK F +A E +G L I +G Sbjct: 169 IRTDPKWDAPRKQEERRKAEQILKDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQL- 227 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 D L D++F L K G+ + ++ G+ I ++ KP +S+++VK+ I + Sbjct: 228 -----DNKLEDAVFKL-KTGELSNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLH 281 Query: 377 ITKASEKVKEDYKRLEE 393 KA + + +L E Sbjct: 282 EEKAKREADQQAGKLRE 298 >gi|319790649|ref|YP_004152282.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1] gi|317115151|gb|ADU97641.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1] Length = 428 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 25/139 (17%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E EK I+++++E +A YEKNKE++ P+ F +++ A EA + L Sbjct: 263 ELEKGIKVTDEEAKAFYEKNKERFKMPDRVKAVVFYFKSKERALEAKKML---------- 312 Query: 301 EEQGKSLSDIS--LGSF-SKEYIPDVSLADSIFSLA------KKGDFTPVIHGSFG--YV 349 E GKS D++ LG F +KE D I +L KKG V FG YV Sbjct: 313 -ESGKSWQDVARRLGQFNAKEKFYYRDPKDPIGALVFMNGNPKKGQ---VFVADFGGKYV 368 Query: 350 IAHVSNIKPSFTVSFQEVK 368 +V P + ++EVK Sbjct: 369 TVYVEKFVPGGVLPYKEVK 387 >gi|260682966|ref|YP_003214251.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196] gi|260686564|ref|YP_003217697.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|296451354|ref|ZP_06893092.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296880296|ref|ZP_06904261.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] gi|260209129|emb|CBA62320.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196] gi|260212580|emb|CBE03572.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|296259770|gb|EFH06627.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296428739|gb|EFH14621.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] Length = 261 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + ++ DE +E NK + PE T + ++ + ++A E +K + + A + Sbjct: 102 VNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHS 161 Query: 306 SL--SDIS--LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S D+ LG+F + + +P+ +++FS+A KG+ + + FGY I + +++ S Sbjct: 162 SCPSKDMGGDLGTFGRGQMVPE--FEEAVFSMA-KGEVSEPVKTQFGYHIIKLEDLQEST 218 Query: 361 TVSFQEVKKDIANQMRITKASE 382 +F EVK ++ + K +E Sbjct: 219 ESTFDEVKAEVEKSLLYQKQNE 240 >gi|315304396|ref|ZP_07874697.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596] gi|313627234|gb|EFR96066.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596] Length = 245 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 11/135 (8%) Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 K + P+I TV ++ ++ +A E Q LK G KF LA+E + G + P Sbjct: 82 KTWQPDI-TVSHILVADEAKAKEVEQKLKDGAKFADLAKEYSTDTATKDNGGELAPFGPG 140 Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-----ANQ 374 D + + ++L KGD + + +GY I + KP+ ++ + KK + +Q Sbjct: 141 KMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTYDKDKKAVKESYLQSQ 198 Query: 375 MRITKASEKVKEDYK 389 + + +K++YK Sbjct: 199 LTTENMQKTLKKEYK 213 >gi|302337922|ref|YP_003803128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] gi|301635107|gb|ADK80534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] Length = 357 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 70/306 (22%), Positives = 121/306 (39%), Gaps = 75/306 (24%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L ++L++L+ L Q + G EAD +V ++ + K S + + LA++ Sbjct: 101 LKGQVLESLIDQELLAQEAKGQGYEADQTKVDQQLQQI-----KGQFPSEEQYYQALAQQ 155 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL--DQAKRFYFENRSVDYIVLNNRHV 202 GI+E++++ K L VV FV S + + + +K +Y +N S Y V Sbjct: 156 GISEQDFLAELKKSL----VVQQFVSDRFASQVAVTEEDSKTYYDDNPS--YFV------ 203 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 PE R S+ILF V E Sbjct: 204 -----------------------QPERVRASHILFSVAED-------------------- 220 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGKSLSDIS-LGSFSKEY 319 +Q V + +A+ A + K G++F LA E +G S S LG F + Sbjct: 221 --------ASDQDVAAAKTKAESALERYKNGEEFSDLARELSEGPSASQGGDLGFFGRNQ 272 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + D+ FS+ K G+ + + FG+ + ++ T+ F +VK I++ + + Sbjct: 273 MVK-PFEDAAFSM-KVGEVSDPVRTKFGFHLIRLTARNEKGTLPFDQVKPQISDHLYKLR 330 Query: 380 ASEKVK 385 E VK Sbjct: 331 LGELVK 336 >gi|251772783|gb|EES53345.1| probable peptidyl-prolyl cis-trans isomerase [Leptospirillum ferrodiazotrophum] Length = 289 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-Q 303 K+++++ ++Q ++K++++ P V QL+ P+QK AD SL+K K F + E+ + Sbjct: 124 KVKVTDADVQGYFDKHRQEIKQPGYVEVRQLIIPDQKTADRIVSSLRKKKGFSRAIEKFK 183 Query: 304 GKSLSDISLGSFSKEY 319 G + I G+ ++ Sbjct: 184 GGPVGKIFEGTVPPQF 199 >gi|171463604|ref|YP_001797717.1| hypothetical protein Pnec_0905 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193142|gb|ACB44103.1| conserved hypothetical protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 34/258 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + +RK R + + L++L VP F +G+S + + +V V + + Sbjct: 1 MFDTVRKHQR--ILQFVLMLLIVPSFAFFGVSSYSSFLDKETDLVKVNGKSI-------- 50 Query: 60 WKQELGMISQKIGFVV--NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE+ M +++ V N + A+S+ + IL+ L+ L + D+ L+ + Sbjct: 51 TAQEVDMAAKRQAERVGGNVQIAQSLQFRQAILNELLQQRILGFAVSDLRLQVGKEALVK 110 Query: 118 EIARSP---LFHGKDNKFSHDVFVSRLAREGINEKEY---------IDHYTKMLSRTDVV 165 + P + +D F F LA G+NE ++ I ++RT++ Sbjct: 111 SLQNIPQIRALYKQDGSFDDARFKQLLASNGLNEGQFYAGQAFDLKISQLVNSVARTEI- 169 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G + S ++ Y R V + + + + +PS L ++ + Sbjct: 170 ----GSPKLSEIV----STLYEMERQVQIMPFDAKDYLSKVNPSQEELQAFYAANSKLFE 221 Query: 226 APEYKRISYILFDVHEKE 243 +PEY + YI+ KE Sbjct: 222 SPEYVDVEYIVLKADSKE 239 >gi|153005189|ref|YP_001379514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] gi|152028762|gb|ABS26530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] Length = 342 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 14/149 (9%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEADEAFQS-------- 289 E++ + S+ EL+A Y+ + + PE +R V V P +D Sbjct: 163 EEKARGSASDAELRAWYDSHGAELAQPERLRVRRVLAKVDPGASRSDRERARERAERFAG 222 Query: 290 -LKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L+ G++F + ++ + + LG + D L + F L G +PVI + Sbjct: 223 RLRAGERFEAVAVSGDGPERARGGDLGLIGRGDGKDARLESAAFELPAVGARSPVIELTD 282 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 G+ + + +P SF+E + +++N++ Sbjct: 283 GFAVLELIERRPGRVPSFEEARGEVSNRL 311 >gi|329769980|ref|ZP_08261377.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325] gi|328837540|gb|EGF87167.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325] Length = 311 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 15/133 (11%) Query: 248 ISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPN-------QKEADEAFQSLKKGKKFIQL 299 I+ D+L+ YEKNK +Y I +V+ PN +K+A+E + +K G F L Sbjct: 129 ITEDKLKESYEKNKHQYHLAHILISVKSSSNPNGLSDEEAKKKAEEVLKKIKDGGDFATL 188 Query: 300 AEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+E + S LG SKE VS ++ K + V+ FGY I V + Sbjct: 189 AKEYSNDTGNASNGGDLGWSSKEDNSYVSEFNNAAYALNKDQVSDVVKTPFGYHIIKVLD 248 Query: 356 IKPSFTVSFQEVK 368 K S S+ E+K Sbjct: 249 TKDS---SYDELK 258 >gi|227484925|ref|ZP_03915241.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC 51172] gi|227237080|gb|EEI87095.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC 51172] Length = 248 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--- 305 ++D+L+ YE NKE + T ++ + +A++ ++ +K G F + A++ K Sbjct: 95 TDDDLKKYYEDNKELISPNKTYTASHILVDDIDKANKIYEEIKLGLDFKEAAKKYSKDPS 154 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + S SLG+F K + D + SL + G+ + + FGY I + +I+ +F Sbjct: 155 AASGGSLGTFPKGVMVK-EFQDGLDSL-EIGEISKPVKSQFGYHIIKLEDIQNEEPKAFD 212 Query: 366 EVKKDIANQMRITKASEKVKEDYKRL 391 EVK+ + + K EK E K + Sbjct: 213 EVKEQVYQTYLMVKRQEKYLEKLKEI 238 >gi|222056243|ref|YP_002538605.1| hypothetical protein Geob_3161 [Geobacter sp. FRC-32] gi|221565532|gb|ACM21504.1| conserved hypothetical protein [Geobacter sp. FRC-32] Length = 580 Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 20/161 (12%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL-AEEQ 303 +I+++++E++A Y +++ PE+ + L F + A+ A + L+KG ++ L A + Sbjct: 414 EIKVTDEEIKAHYNAEIDEFSLPEMLKLRGLAFTRKDFAEAAMEKLQKGTEYQWLQANAE 473 Query: 304 GKSLSDI-SLGSFSKEYIPDVSLADSI---FSLAKKGDF----TPVIHGSFGYVIAHVSN 355 G D L SFS+ + SL + + + AK G++ TP F YVI V Sbjct: 474 GLVPGDTEGLMSFSQTPVTRKSLPEKMQEAIAAAKPGEYRLFETP---EGFVYVI-QVQE 529 Query: 356 IKPSFTVSFQEVKKDIANQM---RITKASE----KVKEDYK 389 + P+ ++VK+ I ++ ++ K+ E K++E YK Sbjct: 530 VIPAKPQPLEQVKQSITKEVFNQKLNKSVEDWGQKLREAYK 570 >gi|225163766|ref|ZP_03726066.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] gi|224801636|gb|EEG19932.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] Length = 568 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 23/180 (12%) Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 R+ + SVDY + PA+ + L ++FE Y+ P +I YI F + Sbjct: 192 RWTLDVASVDYASFS----PAVKVGED-TLKKYFEDNALRYQIPAKVQIRYIDFPTSARL 246 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------FQSLKKGKKFI 297 + +++DE + Y N + F P +T + P A A F ++K + I Sbjct: 247 AETSVTDDEAREYYLANTHRSFKPADKTKTPDLLPKTTPATSAEDKNADFDAVK--TQVI 304 Query: 298 QLAEEQ------GKSLSDISLGSFSKEY-IPDVS--LADSIFSLAKKGDFTPV-IHGSFG 347 Q EQ K+ +DISL F+++ + D+ + D+ +L F P + G FG Sbjct: 305 QTLREQKAQRLTAKAAADISLALFNQKVALKDLPAFVKDNNLTLKDVAPFPPQNVPGIFG 364 >gi|319793857|ref|YP_004155497.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus EPS] gi|315596320|gb|ADU37386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus EPS] Length = 261 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 LFD + K + S+ +++AEY+K E + ++ + +A + LKKG K Sbjct: 103 LFDNYRKTNPV--SDADVKAEYDKFVAANGGKEYKA-RHILVETEDQAKKIMADLKKGAK 159 Query: 296 FIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYV 349 F +A++Q K + G + ++P+ S +++ L KKG+ TP I FGY Sbjct: 160 FEDIAKKQSKDPGSGANGGDLDWANPASFVPEFS--EAMIKL-KKGETTPAPIKTQFGYH 216 Query: 350 IAHVSNIKPSFTVSFQEVK 368 I V +I+ + +EVK Sbjct: 217 IIRVDDIRQAQLPKLEEVK 235 >gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630] gi|254974902|ref|ZP_05271374.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-66c26] gi|255092291|ref|ZP_05321769.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP 107932] gi|255100375|ref|ZP_05329352.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-63q42] gi|255306317|ref|ZP_05350488.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC 43255] gi|255314029|ref|ZP_05355612.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-76w55] gi|255516709|ref|ZP_05384385.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-97b34] gi|255649808|ref|ZP_05396710.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-37x79] gi|255655366|ref|ZP_05400775.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-23m63] gi|306519909|ref|ZP_07406256.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-32g58] gi|115250393|emb|CAJ68215.1| putative peptidyl-prolyl isomerase [Clostridium difficile] Length = 251 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + ++ DE +E NK + PE T + ++ + ++A E +K + + A + Sbjct: 92 VNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHS 151 Query: 306 SL--SDIS--LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S D+ LG+F + + +P+ +++FS+A KG+ + + FGY I + +++ S Sbjct: 152 SCPSKDMGGDLGTFGRGQMVPE--FEEAVFSMA-KGEVSEPVKTQFGYHIIKLEDLQEST 208 Query: 361 TVSFQEVKKDIANQMRITKASE 382 +F EVK ++ + K +E Sbjct: 209 ESTFDEVKAEVEKSLLYQKQNE 230 >gi|157362935|ref|YP_001469702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae TMO] gi|157313539|gb|ABV32638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae TMO] Length = 343 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 20/147 (13%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 ++ +E + YE+N+E + E + ++ ++++AD+A + ++ G++F Q+A Sbjct: 173 VTEEEARQFYEQNREYFAVEEAAKLLRITVDSKEKADKALERIRAGEEFSQVA------- 225 Query: 308 SDISLGSFSKEYIPDVS------------LADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 SD+S SK D+ + + IF ++ KG + S G+ I + + Sbjct: 226 SDVSTDPLSKGKAGDLGWVERGSGLISEEIEEKIF-VSPKGAILGPLQTSVGWEIYRIID 284 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE 382 +P +F++V DI + KA + Sbjct: 285 KRPKGYENFEDVVNDIYQHLIQQKAQQ 311 >gi|237747325|ref|ZP_04577805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] gi|229378676|gb|EEO28767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] Length = 259 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 22/144 (15%) Query: 244 KKIEISNDELQAEYEK-----NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 KK +S+ E++AEY++ N ++Y V+ ++ N+ +A L KG F + Sbjct: 107 KKNPVSDKEIKAEYDRVASLQNGQQYH------VKHILVKNEADAQNIINQLNKGANFEK 160 Query: 299 LAEE----QGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIA 351 +A+E QG + D+S S S P +D++ +L KKG T + FGY I Sbjct: 161 IAKEKSIDQGSAARGGDLSWASPSNYIKP---FSDAMIAL-KKGQITKTPVKTQFGYHII 216 Query: 352 HVSNIKPSFTVSFQEVKKDIANQM 375 + +++ + S +VK I + Sbjct: 217 KLVDVRKATLPSLNQVKPKIKTSL 240 >gi|153854234|ref|ZP_01995542.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814] gi|149753283|gb|EDM63214.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814] Length = 245 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 20/153 (13%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEE-- 302 + +++DE++ YE NK KY + ++ N+++ E ++ G+K F +A+E Sbjct: 92 VNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNAITSGEKVFEDVAKESS 151 Query: 303 ------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 G L + G KE+ D+ F+ A+ G + FGY + V + Sbjct: 152 TCPSGANGGDLGEFGRGQMVKEF------EDAAFA-AEVGHVVGPVKTQFGYHLIKVEDK 204 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 K + S +EVK +Q+R + +K +E Y+ Sbjct: 205 KEAGESSLEEVK----DQIRAELSQKKQEEAYR 233 >gi|254560598|ref|YP_003067693.1| cell-binding factor 2 [Methylobacterium extorquens DM4] gi|254267876|emb|CAX23742.1| putative cell-binding factor 2 precursor (Major antigen peb4A), cbf2 [Methylobacterium extorquens DM4] Length = 300 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 19/177 (10%) Query: 226 APEYKR-ISY-----ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 APE+KR ++Y +L D E+E K ++ + +A YE+ + E ++ + Sbjct: 108 APEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVES 167 Query: 280 QKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + EA + +K G+ F ++A E G LG FS+E + AD+ F +A Sbjct: 168 EDEAKKIAARVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVK-PFADAAFKMA-P 225 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVK 385 G + + FG+ + V + +F E+K+ I A Q I K E K Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAK 282 >gi|118475291|ref|YP_891759.1| putative peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter fetus subsp. fetus 82-40] gi|118414517|gb|ABK82937.1| putative peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter fetus subsp. fetus 82-40] Length = 485 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 6/162 (3%) Query: 1 MLEIIRKASRTWVAKIFL-VVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++K + V I++ + FV F+ WG D + + +++V VG + + F Sbjct: 1 MLTWMQKHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNSNRATSVAKVGNRNITIQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ S E+A +GLD+ L L+ +++DIGL + Sbjct: 59 KTYSNLYNYYSSLSEGKFTQEQADEMGLDRIALQRLIQENLFLNYVDDIGLMVSKEELIA 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + F D KF + L R I K++ + T L Sbjct: 119 ALTSDEGFQV-DGKFDKSRYEDTLKRARITPKDFENELTNKL 159 >gi|16803484|ref|NP_464969.1| hypothetical protein lmo1444 [Listeria monocytogenes EGD-e] gi|47095395|ref|ZP_00233005.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|224499704|ref|ZP_03668053.1| hypothetical protein LmonF1_08419 [Listeria monocytogenes Finland 1988] gi|224501615|ref|ZP_03669922.1| hypothetical protein LmonFR_03702 [Listeria monocytogenes FSL R2-561] gi|254827732|ref|ZP_05232419.1| rotamase [Listeria monocytogenes FSL N3-165] gi|254829797|ref|ZP_05234452.1| hypothetical protein Lmon1_00510 [Listeria monocytogenes 10403S] gi|254898390|ref|ZP_05258314.1| hypothetical protein LmonJ_01205 [Listeria monocytogenes J0161] gi|254912118|ref|ZP_05262130.1| protein export protein [Listeria monocytogenes J2818] gi|254936446|ref|ZP_05268143.1| rotamase [Listeria monocytogenes F6900] gi|284801831|ref|YP_003413696.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578] gi|284994973|ref|YP_003416741.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923] gi|46396979|sp|Q8Y759|PRSA1_LISMO RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|16410873|emb|CAC99522.1| lmo1444 [Listeria monocytogenes EGD-e] gi|47016216|gb|EAL07139.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|258600111|gb|EEW13436.1| rotamase [Listeria monocytogenes FSL N3-165] gi|258609038|gb|EEW21646.1| rotamase [Listeria monocytogenes F6900] gi|284057393|gb|ADB68334.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578] gi|284060440|gb|ADB71379.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923] gi|293590088|gb|EFF98422.1| protein export protein [Listeria monocytogenes J2818] Length = 294 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y L E +++S +L+A Y K + P+I TV ++ ++ A E L Sbjct: 105 NLEYNLLVQKATEANMDVSESKLKAYY-----KTWEPDI-TVRHILVDDEATAKEIQTKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G+KF LA+E + + G + P D + + ++L K D + ++ ++G Sbjct: 159 KNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYG 218 Query: 348 Y 348 Y Sbjct: 219 Y 219 >gi|145525751|ref|XP_001448692.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124416247|emb|CAK81295.1| unnamed protein product [Paramecium tetraurelia] Length = 481 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 19/129 (14%) Query: 185 FYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 +YF+ DY +++ P I+ D +N L Q+F + + +P+Y I +++ D H Sbjct: 309 YYFK----DYFIIDTDPPPNISVTDFNNISLNQYFRAF---FNSPKYSDIIFVVEDKHLY 361 Query: 243 EKKIEISNDEL-----QAEYEKNKEKYFSPEI--RTVEQL---VFPNQKEADEAFQSLKK 292 KI +S E+ + EY+ ++K + + + EQL ++ + D+ QS++ Sbjct: 362 AHKIVLSRYEMFKKMFEWEYKNQQQKVYINDCSNQIFEQLLYFIYAGDLQCDQFQQSVEF 421 Query: 293 GKKFIQLAE 301 ++F+QLA+ Sbjct: 422 YRQFLQLAD 430 >gi|85705703|ref|ZP_01036800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217] gi|85669693|gb|EAQ24557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217] Length = 304 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 11/155 (7%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT---VEQLVFPNQKEAD 284 E +R + + DV E +++ + LQA Y+ +Y E +T ++ ++EA Sbjct: 117 ENERRAVLAADVAEGVVNADMTEERLQAAYDA---QYAGQEDQTEYKAAHILVETEEEAQ 173 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPV 341 + L+ G F LA+E S S G + D + F+ GD + Sbjct: 174 KLVAELEGGANFAALAQEHSTGPSGPSGGDLG--WFGDGVMVPEFFAAVAALEVGDVSAP 231 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + FG+ + ++ + + V++D+AN +R Sbjct: 232 LQTQFGWHVIQLNETRVKERPTLDAVREDLANTLR 266 >gi|269925897|ref|YP_003322520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum terrenum ATCC BAA-798] gi|269789557|gb|ACZ41698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum terrenum ATCC BAA-798] Length = 398 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSL 325 V ++ +++A+E + L++GKKF +A+E KS+ D + LG ++ I + S Sbjct: 255 VRHILVSTKQQAEEVIKELRQGKKFEVIAKE--KSIDDQTKLKGGDLG-WAPRGIYEKSF 311 Query: 326 ADSIFSLAKKGDFTPVIHGSFGY 348 D+ F+L K G +P + S+G+ Sbjct: 312 EDAAFALTKVGQISPPVQTSYGW 334 >gi|18311465|ref|NP_563399.1| peptidylprolyl isomerase [Clostridium perfringens str. 13] gi|46396974|sp|Q8XHK0|PRSA_CLOPE RecName: Full=Foldase protein prsA; Flags: Precursor gi|18146149|dbj|BAB82189.1| probable protein export protein [Clostridium perfringens str. 13] Length = 342 Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294 K +++++++ Q Y++NK+++ + + + + L+F N++EA +A+ ++ GK Sbjct: 165 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 224 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352 K+ E K +++ +LG E V D + L K+G+ + I FGY +I Sbjct: 225 KYQNNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKPIKTQFGYHIIQA 282 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + F EVK I ++ K SEK K D + ++ L + D++ KI Sbjct: 283 GATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 340 >gi|255026336|ref|ZP_05298322.1| hypothetical protein LmonocytFSL_08280 [Listeria monocytogenes FSL J2-003] Length = 247 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y L E +++S +L+A Y K + P+I TV ++ ++ A E L Sbjct: 58 NLEYNLLVQKATEANMDVSESKLKAYY-----KTWEPDI-TVRHILVDDEATAKEIQTKL 111 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G+KF LA+E + + G + P D + + ++L K D + ++ ++G Sbjct: 112 KNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYG 171 Query: 348 Y 348 Y Sbjct: 172 Y 172 >gi|225872709|ref|YP_002754166.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium capsulatum ATCC 51196] gi|225793467|gb|ACO33557.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium capsulatum ATCC 51196] Length = 660 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 188 ENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E RS+ YI + +P A ++A + Q++ ++D Y+ PE ++ +IL V Sbjct: 240 ETRSIQYIAFQDSQIPGGAPQVTDAEIQQYYNAHQDQYKVPEEVKVRHILIQV 292 >gi|251795790|ref|YP_003010521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] gi|247543416|gb|ACT00435.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] Length = 343 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 32/244 (13%) Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN--RHVPAIAD------PSNAV 212 R D GG RP + L QA + E +++ + + N + AD +N Sbjct: 71 RKDYWTSAFGGERPIDRLKKQAMKDAVEGKTLQLLAVENGLAESSSFADFTRNWNDNNQS 130 Query: 213 LTQWFEKYKDNYRAPEYK-------RISYILFDVHEK--EKKIEISNDELQAEYEKNKEK 263 + ++ K Y EY IS + D+ EK E+++++++ EL Y+ + E Sbjct: 131 RAKDLKQGKAIYGLGEYDLSQFYFYSISNLKLDLAEKLGERELKVTDQELLDRYQSHAE- 189 Query: 264 YFSPEIR-TVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDIS 311 F+ + + T ++L P K+ EA Q LK G F + A+ E G + + Sbjct: 190 -FAGQTQLTYKELSIPFGDGEREQAYKQITEAQQELKAGLSFEEAAKKYTENGLRDNTVI 248 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 +G D L + L + G+++PV+ G+ I + N +F+V VK + Sbjct: 249 IGGQDSPLQADAVLKQAAARL-EIGEYSPVLDCGSGFSIIRLVNRTDNFSVPLDSVKAQL 307 Query: 372 ANQM 375 ++ Sbjct: 308 QEEV 311 >gi|323490390|ref|ZP_08095605.1| foldase protein PrsA [Planococcus donghaensis MPA1U2] gi|323396060|gb|EGA88891.1| foldase protein PrsA [Planococcus donghaensis MPA1U2] Length = 288 Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 IEI+++++ +E+NKE + ++ Q+EADE L G F +LA E Sbjct: 129 IEITDEQISTYFEENKETFAQASKVEANHILVETQEEADEVKAKLDDGDDFAELAAEYSV 188 Query: 306 SLSDI----SLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S+ +LG F + E P+ ++ FSL K + + + +G+ I V+ + Sbjct: 189 DTSNAEDGGALGEFGAGEMTPE--FEEAAFSL-KVDEISDPVETDYGFHIIQVTGKTEAT 245 Query: 361 TVSFQEVKKDI 371 + ++ K+ I Sbjct: 246 EANLEDSKEQI 256 >gi|148269160|ref|YP_001243620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga petrophila RKU-1] gi|170287822|ref|YP_001738060.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2] gi|281411458|ref|YP_003345537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga naphthophila RKU-10] gi|147734704|gb|ABQ46044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga petrophila RKU-1] gi|170175325|gb|ACB08377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2] gi|281372561|gb|ADA66123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga naphthophila RKU-10] Length = 329 Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGK 305 ++ +E Q Y +NKE Y P + ++ ++ + DEA ++KG+ F+++A + G Sbjct: 172 VTLEEAQNYYNQNKETYRIPAAVHLYRITTEDKSKMDEALSKIRKGEDFLEVATQVATGG 231 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L I G K+ +S+ A +G +V+ V + S F+ Sbjct: 232 DLGWIEEGKLEKDI-------ESVIFDAPEGAILGPFESEGKFVLYKVVEKRSSSYKKFE 284 Query: 366 EVKKDIANQMRITKASE-------KVKEDYKR 390 EVK++I +++ K ++ KV E++K+ Sbjct: 285 EVKQEIMDKLLADKKNQLWNDWFNKVFEEFKK 316 >gi|167586945|ref|ZP_02379333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ubonensis Bu] Length = 259 Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 14/140 (10%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 KK + ++ E++A Y++ + + E+ + ++ N+++A + +K G KF LA++ Sbjct: 107 KKNQPTDAEVKARYDELVKGAANRELH-LHHILVDNEQQAKDLIAKIKAGAKFEDLAKQY 165 Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSN 355 GK+ D+ K Y+P+ + A + +KG T PV FG+ I V + Sbjct: 166 SKDPGSGKNGGDLDWAD-PKAYVPEFAAAATKL---QKGQMTDEPV-KTQFGWHIIRVDD 220 Query: 356 IKPSFTVSFQEVKKDIANQM 375 ++ F +VK IA QM Sbjct: 221 VRSVAPPPFDQVKPQIAQQM 240 >gi|312112916|ref|YP_004010512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] gi|311218045|gb|ADP69413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] Length = 283 Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 12/148 (8%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +EK+ + I++ + +A Y++ K PE+R ++ ++EA + + LK G F + Sbjct: 102 YEKKVRDAITDAQAKAAYDEQIAKLKPEPEVRA-RHILVKTKEEAADLVKQLKGGADFNE 160 Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA++ S + LG FSK + V D+ F+L + G + + FG+ + V + Sbjct: 161 LAKKSADGPSANTGGDLGYFSKGQMVKV-FEDTAFAL-QPGQISDPVQSEFGWHVIKVED 218 Query: 356 IKPSFTVSFQEVKKDIA-----NQMRIT 378 + SF EVK I NQ+R T Sbjct: 219 KRNRPVPSFDEVKDQIVASLVQNQLRET 246 >gi|160871799|ref|ZP_02061931.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella grylli] gi|159120598|gb|EDP45936.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella grylli] Length = 484 Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust. Identities = 62/278 (22%), Positives = 120/278 (43%), Gaps = 50/278 (17%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-ALFSVSGSSTVVS-VGRQKVPFSSF-- 56 ML+ IR S+ W+ + +L + F +WG+ +F SG++ +V+ + Q + S F Sbjct: 1 MLQSIRDKSQGWITNTVIGLLIIIFALWGIHGYVVFHESGNNKIVAKIAGQLLRQSDFEK 60 Query: 57 --INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL----VSGATLDQFIEDIGLEA 110 +++Q ++Q S DKK ++ L V + Q + L++ Sbjct: 61 IYQRAYQQNRDYLNQ------------SFSHDKKKVEALKEQVVREWEITQVLVYAALQS 108 Query: 111 DHGRVWGEIARS-----PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 + R+ + S P F +FS + F S L + E+++ KML ++ Sbjct: 109 KY-RISQTLIDSFLLQVPAFQSA-GQFSIEKFYSVLRANDYTKLEFLEEIKKML----LI 162 Query: 166 GMFVGGMRPSNLLLDQAKRFYFE----NRSVDYIV------LNNRHVPAIADPSNAVLTQ 215 G+ S +L Q R Y E R Y++ LN +++P ++ + Sbjct: 163 NQVQQGITQSAFVLPQDIRNYIEYNHQKRDFSYLIVPYSMFLNQQNIP------DSRIFA 216 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 ++++ K +R PE I Y+ + ++ +E S D+L Sbjct: 217 YYQENKQLFRQPEQVSIEYVQLSLKNEKNFLE-SRDKL 253 >gi|297566395|ref|YP_003685367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] gi|296850844|gb|ADH63859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] Length = 322 Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust. Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 9/180 (5%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 N L+Q D+YR Y+ ++Y + + + +++++ S L+ Y ++ ++ +PE Sbjct: 124 NQALSQVGIASIDDYRMLVYEALTYNAY-LEQLQEQVKPSESALRLIYGLSQAEFTTPET 182 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSK-EYIPDVS 324 ++ + EA + L +G F LA ++ G + LG + Y+ Sbjct: 183 YCASHILVVSGDEAISLIRQLGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYV--AP 240 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 +++ L + FG+ I ++ I+PS F EVK IA ++ + +A EK+ Sbjct: 241 FENAMIRLKAGQTSREPVRTEFGFHIIRLNKIEPSTVRPFDEVKSSIAERV-VQRALEKL 299 >gi|170763930|ref|ZP_02635346.2| putative foldase protein PrsA [Clostridium perfringens B str. ATCC 3626] gi|170764086|ref|ZP_02631748.2| putative foldase protein PrsA [Clostridium perfringens E str. JGS1987] gi|170662690|gb|EDT15373.1| putative foldase protein PrsA [Clostridium perfringens E str. JGS1987] gi|170712067|gb|EDT24249.1| putative foldase protein PrsA [Clostridium perfringens B str. ATCC 3626] Length = 326 Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294 K +++++++ Q Y++NK+++ + + + + L+F N++EA +A+ ++ GK Sbjct: 149 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 208 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352 K+ E K +++ +LG E V D + L K+G+ + I FGY +I Sbjct: 209 KYENNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKPIKTQFGYHIIQA 266 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + F EVK I ++ K SEK K D + ++ L + D++ KI Sbjct: 267 GATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 324 >gi|319653565|ref|ZP_08007664.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2] gi|317394764|gb|EFV75503.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2] Length = 292 Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E +IEIS + ++ +++NKE + E + ++ +++ A E L G F +LA E Sbjct: 130 EPRIEISEEAMKTYFDENKESFAQEEQVSASHILVEDEETAKEVIGKLNDGGDFAKLAAE 189 Query: 303 QGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 S+ LG F K + + + FSL + G + + +GY + V+ + Sbjct: 190 YSTDESNKDAGGDLGFFGKGDMVE-EFEEVAFSL-EPGKISDPVKTEYGYHVIKVAEKQE 247 Query: 359 SFTVSFQEVKKDIANQM 375 + ++++VK+++ N + Sbjct: 248 AKEAAYEDVKEEVKNTL 264 >gi|154148403|ref|YP_001406775.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] gi|153804412|gb|ABS51419.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] Length = 271 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKKFI 297 EK K I+++ ++++A Y+KNK K+ P ++ + EA LK KG + Sbjct: 102 EEKAKNIKVAENDIKAFYDKNKAKFMQPAQIKAGHILVKTEAEAKTIINDLKNFKGDDLV 161 Query: 298 --------QLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFT--PVIHGS 345 Q + E + +LG FS+ + P A ++ KKG+ + PV Sbjct: 162 KNFAITAAQKSLEPAARQTGGALGWFSEHQMVKPFYDAAKAL----KKGEISLKPV-KTQ 216 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FGY + + K + +F E K I N ++ K E + ++ K L Sbjct: 217 FGYHVILKEDAKDAHQATFSEAKPTIENILKQEKLKETITKEAKDL 262 >gi|299144111|ref|ZP_07037191.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518596|gb|EFI42335.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 253 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 15/136 (11%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----- 303 S E++ Y N E Y P ++ ++ +A+E + + G+ F +LA+ Sbjct: 95 SEKEIEEFYNANAEHYDVPNSVDASHILVEDENKANELYNKILAGENFEELAKNNSMCPS 154 Query: 304 ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 G +L G +E+ + +FS+ K+G+ + + +FG+ I ++ I PS Sbjct: 155 KNNGGNLGVFHSGQMVREF------DEKVFSM-KEGEISEPVKTNFGFHIIKLNKIIPSK 207 Query: 361 TVSFQEVKKDIANQMR 376 + EV+ D+ +++ Sbjct: 208 KHTLSEVRDDVIKEVK 223 >gi|39997172|ref|NP_953123.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39984062|gb|AAR35450.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] gi|298506185|gb|ADI84908.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter sulfurreducens KN400] Length = 321 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 17/138 (12%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS------------LKKG 293 I++ +L+A YEKNK + PE V ++ +KEA Q+ + G Sbjct: 152 IKVPETDLRAYYEKNKSGFKKPETIAVRHILVKVEKEASPETQAEARKKIEGIRDRIGAG 211 Query: 294 KKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA E S LG + ++P FSL K G+ + ++ G+ I Sbjct: 212 ADFAVLASESSDCASAAKGGDLGEIQRGFMPR-EFDQVAFSL-KPGETSGIVKTHHGFHI 269 Query: 351 AHVSNIKPSFTVSFQEVK 368 V P +F+E++ Sbjct: 270 IRVMERHPETVRTFEEMR 287 >gi|189220090|ref|YP_001940730.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum infernorum V4] gi|189186948|gb|ACD84133.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum infernorum V4] Length = 283 Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%) Query: 217 FEKYKDNYRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEK-----NKEKYFSPEIR 270 EK K+ RA E + R + V +K + S EL+ Y + KE+Y Sbjct: 94 MEKSKELLRAQEEFNRKALTELVVQKKIRSQPPSEGELRLRYSQLLKSLPKEEY------ 147 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 + +V P +++A E + LKKG+ F LA E + + G + +L S + Sbjct: 148 KIRHIVLPTRRKALEVMERLKKGENFSLLAMESLEKQTADRGGELG--WQNKATLVLSAY 205 Query: 331 SLAKK---GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 SL +K G I S G+ + + ++P S++E+K + Q+ Sbjct: 206 SLIQKLKPGQVGGPILSSMGWELIELLAVRPLRVPSYEELKPQLIQQI 253 >gi|332188835|ref|ZP_08390544.1| hypothetical protein SUS17_3944 [Sphingomonas sp. S17] gi|332011145|gb|EGI53241.1| hypothetical protein SUS17_3944 [Sphingomonas sp. S17] Length = 179 Score = 38.5 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTPVIHGSFGYVIA 351 GK F +L EE+ + L+DI GS S DV AD +L +K D + GS+G++IA Sbjct: 15 GKPFAELDEEERQVLTDIESGSISTRDAADV--ADETATLGEKLADRVAAVGGSWGFIIA 72 >gi|91203827|emb|CAJ71480.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein SurA precursor) [Candidatus Kuenenia stuttgartiensis] Length = 333 Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 16/139 (11%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKK-------GKK- 295 +S+ +++ +EKN++ Y E++ LV + +E A Q ++K GKK Sbjct: 171 VSDAKVKDYFEKNRQIYDGTEVQASHILVDTRNLQGEEDLAKAKQKIEKVKAEIAEGKKD 230 Query: 296 FIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F +LAEE S LG F ++ A++ F+L K G+ + V+ FGY I Sbjct: 231 FAKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFAL-KVGEVSDVVTTQFGYHIIK 289 Query: 353 VSNIKPSFTVSFQEVKKDI 371 V++IK + F E+K +I Sbjct: 290 VTDIKKGGEIDFNELKPEI 308 >gi|253575648|ref|ZP_04852984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844986|gb|EES72998.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. oral taxon 786 str. D14] Length = 398 Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 18/139 (12%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E +I +++++++ +E K+ + +PE ++ ++EA + + LK+G F +LA+ Sbjct: 231 EPQINVTDEQVKETFETYKDSFNTPEQVRTSVILVATEEEAKDIVKQLKEGADFAELAKS 290 Query: 303 QGKSLSDISLGSFSKEYIPDVSL----------ADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + SL + +K+ D ++ F LA KG+ + + S GY + Sbjct: 291 K-------SLDTATKDQGGDTDFFARGEMEEAVEEAAFKLA-KGEISEPVKTSEGYQVIK 342 Query: 353 VSNIKPSFTVSFQEVKKDI 371 V++ K + T + +E K +I Sbjct: 343 VTDKKEAHTATLEEKKDEI 361 >gi|34540273|ref|NP_904752.1| hypothetical protein PG0452 [Porphyromonas gingivalis W83] gi|34396585|gb|AAQ65651.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 715 Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 290 LKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH--- 343 L GK F +LAE+ +G S+ + + + +++ ++ + I S A K + V Sbjct: 496 LNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEEDEVNEKIF 555 Query: 344 --GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLALGT 399 G+ VIA V + PS +++K+ IANQ+R+ K EK+ D K+L+ A + Sbjct: 556 RCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAKKLDNLEAYAS 615 Query: 400 SMD 402 +M+ Sbjct: 616 AMN 618 >gi|261856056|ref|YP_003263339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] gi|261836525|gb|ACX96292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] Length = 325 Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ- 303 K+++++ ELQ EY + + Y ++ ++EAD + L G F QLA+E+ Sbjct: 145 KMKVTDAELQPEYNQFVKGYPKTTQYKAAHILVKTKEEADAIIKQLDSGTPFDQLAKEKS 204 Query: 304 ---GKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIK 357 G + LG F + + +P+ S A KKG+ T PV FG+ + + + + Sbjct: 205 QDPGSAKQGGELGWFDADQMVPEFSAAVEKL---KKGEITQQPV-KSQFGWHVIKLEDTR 260 Query: 358 PSFTVSFQEVKKDIANQMR 376 + +F E+K + Q R Sbjct: 261 LAQPPTFAELKPQLETQYR 279 >gi|188995374|ref|YP_001929626.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas gingivalis ATCC 33277] gi|188595054|dbj|BAG34029.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas gingivalis ATCC 33277] Length = 715 Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%) Query: 290 LKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH--- 343 L GK F +LAE+ +G S+ + + + +++ ++ + I S A K + V Sbjct: 496 LNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEKDEVNEKIF 555 Query: 344 --GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLALGT 399 G+ VIA V + PS +++K+ IANQ+R+ K EK+ D K+L+ A + Sbjct: 556 RCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAKKLDNLEAYAS 615 Query: 400 SMD 402 +M+ Sbjct: 616 AMN 618 >gi|330817257|ref|YP_004360962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] gi|327369650|gb|AEA61006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] Length = 259 Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 KK + S+ E++A+Y++ + E + ++ N+++A + +K G KF LA++ Sbjct: 107 KKNQPSDAEVKAKYDELAKGATGSEYH-LHHILVDNEQQAKDLIAKIKAGAKFEDLAKQF 165 Query: 304 GKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNI 356 K G + K ++P+ + A + +KG T PV FG+ I V ++ Sbjct: 166 SKDPGSAKNGGDLDWADPKSFVPEFANAATHL---QKGQMTDEPV-KTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQM 375 +P F++VK +A QM Sbjct: 222 RPIAPPPFEQVKAQLAQQM 240 >gi|183179758|ref|ZP_02957969.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3] gi|183013169|gb|EDT88469.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3] Length = 157 Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIG-FVVN--SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + N ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRLSDEQVRQ 119 Query: 118 EIARSPLFHGK 128 I P F + Sbjct: 120 LILEIPQFQSQ 130 >gi|163743876|ref|ZP_02151247.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10] gi|161382817|gb|EDQ07215.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10] Length = 172 Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 7/140 (5%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S+++L+ Y++ + ++ +++A + L G F LA E+ S Sbjct: 6 SDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPS 65 Query: 309 DIS---LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG FSK +P+ A + GD + + FG+ + +++ + S +F Sbjct: 66 GPNGGELGWFSKGRMVPEFEEAVLVMG---AGDVSDPVQTQFGWHVIKLNDRRTSAAPTF 122 Query: 365 QEVKKDIANQMRITKASEKV 384 EV++++A QMR ++V Sbjct: 123 DEVREELATQMRQEAVEDRV 142 >gi|224825281|ref|ZP_03698386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602202|gb|EEG08380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 258 Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 +S+ +L+AEY+K K ++ + ++ P + EA +L+KGK F QLA+E+ Sbjct: 109 VSDAQLRAEYDKIKSQFPEKKSYHARHILVPTEAEAKAVIDALRKGKAFDQLAKEK 164 >gi|218777935|ref|YP_002429253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] gi|218759319|gb|ACL01785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] Length = 334 Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 33/183 (18%) Query: 248 ISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA-----------FQSLKKGKK 295 +S E + Y+ ++E ++ E +R LV +++ D A + LKKG+ Sbjct: 162 VSEAEAREYYDGHRENFYQEEMVRASHILVEFKEEDGDRADEKALITAKRIVRKLKKGEN 221 Query: 296 FIQLAEE--------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F A E +G L I G K + L + +F + + G+ + + FG Sbjct: 222 FAAAAREYSDCESKKRGGDLGYIQKGDLPKAQLK--PLEEVVFGM-EVGEISEPVESVFG 278 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I +V + KP + F E+K + +M + + + L GT + E +R Sbjct: 279 YHILYVEDKKPRTLLGFDEIKDKLIAKMTEDRKAAMI----------LDHGTKLKETARI 328 Query: 408 EKI 410 E++ Sbjct: 329 ERL 331 >gi|288555301|ref|YP_003427236.1| post-translocation chaperonin [Bacillus pseudofirmus OF4] gi|288546461|gb|ADC50344.1| protein secretion (post-translocation chaperonin) [Bacillus pseudofirmus OF4] Length = 304 Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 9/120 (7%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-- 302 ++ ++ ++ QA YE+N+E Y E ++ +++ A+E + ++ G+ F +LA E Sbjct: 136 EVNVTEEDKQAYYEENEELY--AEQVQASHILVEDEETANEVLEKIEAGEDFGELAAEYS 193 Query: 303 -QGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 G + LG F + E +P+ ++ F L + G+ + + +GY I V++ K + Sbjct: 194 MDGSATRGGDLGFFGTGEMVPE--FEEAAFGL-EVGEVSDAVESQYGYHIIKVTDRKSGY 250 >gi|326798824|ref|YP_004316643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp. 21] gi|326549588|gb|ADZ77973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp. 21] Length = 701 Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 15/97 (15%) Query: 319 YIPDVSLADSIFSLA---KKGDFTPVIHG-SFGYVIAHVSNIKPSFTVSFQEVKKDIA-- 372 Y+P++ + A +KGD T ++ YVIA ++NI+P +S ++VKK+I Sbjct: 509 YLPNLETPREVIKWAFKAEKGDLTDKVYELDNQYVIAKLTNIRPKGQLSLEDVKKEIEPA 568 Query: 373 --NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 N+++ TK ++K L + L S+D+I+++ Sbjct: 569 VLNKVKATKLAQK-------LNDALQGAKSIDQIAQK 598 >gi|296273463|ref|YP_003656094.1| hypothetical protein Arnit_1933 [Arcobacter nitrofigilis DSM 7299] gi|296097637|gb|ADG93587.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299] Length = 488 Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V VG +K+ + + SQ G N E A+ +GL L ++ + + Sbjct: 43 VAVVGDRKISVEEYQREYSSLYRQYSQVYGNKFNQEMAKRIGLPDAALSLVIQKNLILSY 102 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 +D+GL + E+ + P F KD KF +++V L++ G Sbjct: 103 ADDLGLLVTDKDIAKELVQMPSFI-KDGKFDKELYVKVLSQNG 144 >gi|307243271|ref|ZP_07525442.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493399|gb|EFM65381.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM 17678] Length = 255 Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 8/142 (5%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQG 304 +EI++DE A YE++K+++ E + + ++ N++ A E + + KK F A E Sbjct: 93 VEITDDEKLAYYEEHKDEFKEDESASAKHILVDNEELALEIEKKINKKEVSFEDAAVEYS 152 Query: 305 KSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S SLG+F + + +P+ +++F+L G + + FGY + V + K + Sbjct: 153 SCPSKSNGGSLGTFGRGQMVPE--FEEAVFTLP-VGKVSSPVKTQFGYHLILVDDRKEAR 209 Query: 361 TVSFQEVKKDIANQMRITKASE 382 + +++ KKD+ + K +E Sbjct: 210 QLEYEDCKKDVEQSLAFKKQNE 231 >gi|322652566|gb|EFY48920.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 141 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 9/142 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINS 59 M++ +R A+ + V KI V++ V F++ G+S L + GS+ + V Q++ + F N+ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL--IGGSNNYAAKVNGQEISRAQFENA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + E + Q++G SE A + G L +++L+ L+ A LDQ+ ++ L +V Sbjct: 59 FNNERNRMQQQLGDRY-SELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVF 137 I +P F D KF ++ + Sbjct: 118 KQAIFATPAFQ-VDGKFDNNRY 138 >gi|254476741|ref|ZP_05090127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11] gi|214030984|gb|EEB71819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11] Length = 283 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 87/191 (45%), Gaps = 18/191 (9%) Query: 210 NAVLTQWFE----KYKDNYRAPEYKRISY-------ILFDVHEKEKKIEISNDELQAEYE 258 +A+L Q + K + N P+Y +S + DV EK + + +E++A YE Sbjct: 67 DAILDQLIQQTALKQQLNGEVPKYVELSLENESRSLLAADVIEKVMENAATEEEVRAAYE 126 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSF 315 + + ++ ++++A+E L++G F A E+ S + LG F Sbjct: 127 EQYSDGNGGDEFNASHILVESEEDAEEIRAELEEGADFATTARERSTGPSGPNGGELGWF 186 Query: 316 SK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 +K +P+ +++ +L+ G+ + + FG+ + ++ + S F E++ +A Q Sbjct: 187 TKGRMVPE--FEEAVIALS-AGEISAPVQTQFGWHVIKLNERRKSAAPEFAEIRDQLAAQ 243 Query: 375 MRITKASEKVK 385 +R E V+ Sbjct: 244 IREEAVEESVR 254 >gi|329901823|ref|ZP_08272915.1| Peptidyl-prolyl cis-trans isomerase domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327549006|gb|EGF33618.1| Peptidyl-prolyl cis-trans isomerase domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 17/148 (11%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 KK +S+ +++AEY+K K E R ++ + EA LK G KF LA+ Sbjct: 93 KKHPVSDADIKAEYDKFKATAGDKEYRA-RHILVEKEDEAKAIIVKLKAGAKFEDLAKAS 151 Query: 303 -------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVS 354 G L S SF K + +D++ +LAK G +T V + FG+ + + Sbjct: 152 KDPGSAANGGDLDWASPASFVKPF------SDAMVALAK-GSYTEVPVKTQFGFHVIKLE 204 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 + + + + +EVK I+ ++ K E Sbjct: 205 DTRAAKVPTLEEVKPQISESLQQKKLQE 232 >gi|52783929|ref|YP_089758.1| YacD [Bacillus licheniformis ATCC 14580] gi|163119182|ref|YP_077358.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus licheniformis ATCC 14580] gi|319648596|ref|ZP_08002810.1| YacD protein [Bacillus sp. BT1B_CT2] gi|52346431|gb|AAU39065.1| YacD [Bacillus licheniformis ATCC 14580] gi|145902685|gb|AAU21720.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus licheniformis ATCC 14580] gi|317389363|gb|EFV70176.1| YacD protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K I IS+ EL++ Y KNK+ Y + ++ +V ++ EA++ + LK+G F A E Sbjct: 132 KDIVISDSELKSFYNKNKDLYKFDDSYRLKHIVVKDKDEAEQVLKELKEGSSFEAAAAEH 191 Query: 304 GKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ + E +P L + L + I S GY I + Sbjct: 192 STDRYTAPYGGDLGFVNDQHENVPAEYL-EKAEQLKENQWVDEPIKTSQGYAIIQLKEKL 250 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 P ++ EVK I Q+ + + +K Sbjct: 251 PGQAFTYSEVKNQIRRQIAMDQLGDKA 277 >gi|331270660|ref|YP_004397152.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum BKT015925] gi|329127210|gb|AEB77155.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum BKT015925] Length = 247 Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 7/128 (5%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++++++ E++ Y NK+ + E + + ++ N++ A+E + +K G F + A+E Sbjct: 91 EVQVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANEVAEKIKNGMSFDEAAKEYS 150 Query: 305 KSLSDI---SLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S +LG F K + +P+ ++ F+L + G + + FGY + V + + Sbjct: 151 TCPSKAQGGNLGKFGKGQMVPE--FEEAAFNL-EIGKLSEPVKTQFGYHLIEVEDKNKAT 207 Query: 361 TVSFQEVK 368 SF EVK Sbjct: 208 EKSFDEVK 215 >gi|145589120|ref|YP_001155717.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047526|gb|ABP34153.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 487 Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust. Identities = 48/256 (18%), Positives = 108/256 (42%), Gaps = 30/256 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + +RK + + +I L++ VP F+++G+S + + +V V + + ++ Sbjct: 1 MFDTVRKHQK--LLQIVLMLFIVPSFVMFGISSYSGFLDKETDLVKVNGKPITAQEVDSA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K++ ++++G N + A+S+ + IL+ L+ L + ++ L+ + + Sbjct: 59 AKRQ----AERVGG--NIQIAQSLQFRQAILNELLQQRILGFAVINLRLQVGKEALIKSL 112 Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEY---------IDHYTKMLSRTDVVGM 167 P + +D F F LA G+NE+++ I + ++RT++ Sbjct: 113 QNIPQIRALYRQDGSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTEL--- 169 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 P+ L + Y R V + + + +P+ L ++ + +P Sbjct: 170 ------PTPKLSEIVSTLYETERQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESP 223 Query: 228 EYKRISYILFDVHEKE 243 EY + YI+ KE Sbjct: 224 EYIDVEYIVLKADPKE 239 >gi|330889992|gb|EGH22653.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str. 301020] Length = 427 Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 13/188 (6%) Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++++ + +PE + YI K+++ +++LQA Y+K S + R L+ Sbjct: 18 YDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIAN-LSEQRRAAHILI 76 Query: 277 FPNQKEADEAF--------QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325 N K DE Q L KG+ F LA+E + S G ++ + + D + Sbjct: 77 EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAF 136 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++++L K PV FG+ + + ++ +F +K + ++ +K Sbjct: 137 EDTLYALNKDQVSQPV-RTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFV 195 Query: 386 EDYKRLEE 393 E K+LE+ Sbjct: 196 EVTKQLED 203 >gi|313681753|ref|YP_004059491.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] gi|313154613|gb|ADR33291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] Length = 280 Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 12/144 (8%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKKFIQ--LAE 301 I++ E++A ++ N E++ E ++ + EA +S+K G K +A+ Sbjct: 117 IKVDAKEVKAYFDANPEEFVDKEKIHARHILVKTEGEAQSIIKSMKGLSGDKLRNEFIAQ 176 Query: 302 EQGKSLSDIS-----LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + KS + LG F + + +P S D+ F++ + + + FGY + ++ + Sbjct: 177 AKSKSTGPSAAKGGDLGYFPRGQMVP--SFNDAAFAMKEGAISSTPVQSQFGYHVIYIED 234 Query: 356 IKPSFTVSFQEVKKDIANQMRITK 379 KP+ + F EVK I ++++ K Sbjct: 235 KKPAKKLGFDEVKNFIEQRLKMDK 258 >gi|74317550|ref|YP_315290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] gi|74057045|gb|AAZ97485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] Length = 274 Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +++ E+QA Y+K K PE R LV + EA + L K KF LA++ K Sbjct: 126 VTDAEVQAAYDKAKAGPIEPEYRARHILVS-TEAEAKKVIADLGKKAKFETLAKKMSKDP 184 Query: 308 SDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFT 361 G + ++P+ S +++ SL KKG+ T + FGY + + + + Sbjct: 185 GSAKNGGALDWADRRAFVPEFS--EALASL-KKGETTQTPVKTQFGYHVIRLDDTRQPKL 241 Query: 362 VSFQEVKKDIANQMRITKASEKV 384 V+ +I Q++ + + V Sbjct: 242 PELNAVRDEIVKQLQQQRVRDAV 264 >gi|330448801|ref|ZP_08312448.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492992|dbj|GAA06945.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 433 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++EA++ LKKG F QLA + K+L G SKE +P + AD I + K Sbjct: 198 KQEAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMSKEEMPTI-FADQIQNNGKDA 256 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 P G GY I ++++K +VS EVK Sbjct: 257 IIGPFRSG-VGYHILKINDVKGMPSVSVVEVK 287 >gi|313672046|ref|YP_004050157.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] gi|312938802|gb|ADR17994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] Length = 345 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 I+IS +EL+A YE+ + S + Q+V ++ + +EA++ LK GK+F +A+E Sbjct: 176 IKISEEELRAYYEEFIKTKQSKVYYHIYQIVNEDKHKIEEAYKLLKSGKRFEDVAKEYSS 235 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + G I D+ +F L K + + ++ +GY I + S Sbjct: 236 GPEAENGGDMG---IVDIENFPPVFDLVKNLKPNEISKIVSSEYGYHIIMLKETISSDKP 292 Query: 363 SFQEVKKDIANQMRITKASEKVKEDY 388 SF+E+K + +++ I + ++ E+Y Sbjct: 293 SFEEIKDLLLDEL-IAEKKDQYLENY 317 >gi|218529730|ref|YP_002420546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] gi|240138037|ref|YP_002962509.1| putative cell-binding factor 2 precursor (Major antigen peb4A), cbf2 [Methylobacterium extorquens AM1] gi|218522033|gb|ACK82618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] gi|240008006|gb|ACS39232.1| putative cell-binding factor 2 precursor (Major antigen peb4A), cbf2 [Methylobacterium extorquens AM1] Length = 300 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 19/177 (10%) Query: 226 APEYKR-ISY-----ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 APE+KR ++Y +L D E+E K ++ + +A YE+ + E ++ + Sbjct: 108 APEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVES 167 Query: 280 QKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + EA + +K G+ F ++A E G LG FS+E + AD+ F + Sbjct: 168 EDEAKKIAARVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVK-PFADAAFKMT-P 225 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVK 385 G + + FG+ + V + +F E+K+ I A Q I K E K Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAK 282 >gi|239815915|ref|YP_002944825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] gi|239802492|gb|ACS19559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] Length = 261 Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 222 DNYRAP-EYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 D+YR E R + ++ + E +K +S+ E++AEY+K E + ++ Sbjct: 85 DDYRNQLELARQAILIRALFENYRKTSPVSDAEVKAEYDKFVAANGGKEYKA-RHILVET 143 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAK 334 + +A + LKKG KF +A++Q K + G + ++P+ S +++ L K Sbjct: 144 EDQAKKIMADLKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFS--EAMIKL-K 200 Query: 335 KGDFTPV-IHGSFGYVIAHVSNIKPSFTVSFQEV 367 KG+ TP + FGY I V +++ + +EV Sbjct: 201 KGETTPAPVKTQFGYHIIRVDDVRQAQLPKLEEV 234 >gi|170764243|ref|ZP_02639032.2| foldase protein PrsA [Clostridium perfringens CPE str. F4969] gi|170714999|gb|EDT27181.1| foldase protein PrsA [Clostridium perfringens CPE str. F4969] Length = 325 Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 91/184 (49%), Gaps = 26/184 (14%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--------- 294 K +++S+++++ Y++NK+++ V+ L+FP ++EA +A+ ++ GK Sbjct: 149 KDVKVSDEDIKKYYDENKQQFVVKAGADVKHLLFPTEEEAQKAYDEIQSGKTTFDDLFNK 208 Query: 295 -------KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K +AE G+ D + +F K+++ + + L K G+ + + SFG Sbjct: 209 YEKNKDPKKEPIAENLGR--VDYNNSNFDKDFM------EGLKGL-KDGEISKPVKSSFG 259 Query: 348 YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 Y I +NI T ++ ++ K+ I + + K E ++D ++ ++ L + D++ Sbjct: 260 YHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQWKKDLNVKVYDDKLQE 319 Query: 407 REKI 410 KI Sbjct: 320 GLKI 323 >gi|147676453|ref|YP_001210668.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum thermopropionicum SI] gi|146272550|dbj|BAF58299.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum thermopropionicum SI] Length = 324 Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 34/196 (17%) Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 +A P+ A + ++++++ + + PE ++ +ILF V +K + + + +A + Sbjct: 146 VAPPAEADIKKYYDEHLEEFSRPEQLQVRHILFFVDGGDKGYPVQHTDAEAREMAEEAI- 204 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIP 321 LK GK F +LA E+ + + +D L +FS++ Sbjct: 205 -----------------------AQLKAGKDFAELAREKSEDSGTRADGGLYTFSRDEAV 241 Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN----QMR 376 AD+ ++L K G++T + +GY I + P+ F+EV++DIA Q R Sbjct: 242 K-EFADAAYAL-KVGEYTADPVKTEYGYHIIKLEKKIPARQDPFEEVRQDIAGLLLEQAR 299 Query: 377 ITKASEKVKEDYKRLE 392 K E +++ R E Sbjct: 300 QEKFGEFMQQAKDRAE 315 >gi|163850906|ref|YP_001638949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] gi|163662511|gb|ABY29878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] Length = 300 Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 19/177 (10%) Query: 226 APEYKR-ISY-----ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 APE+KR ++Y +L D E+E K ++ + +A YE+ + E ++ + Sbjct: 108 APEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVES 167 Query: 280 QKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + EA + +K G+ F ++A E G LG FS+E + AD+ F + Sbjct: 168 EDEAKKIAARVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVK-PFADAAFKMT-P 225 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI-------ANQMRITKASEKVK 385 G + + FG+ + V + +F E+K+ I A Q I K E K Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAK 282 >gi|182420516|ref|ZP_02643225.2| foldase protein PrsA [Clostridium perfringens NCTC 8239] gi|182624265|ref|ZP_02952050.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721] gi|177910483|gb|EDT72856.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721] gi|182380295|gb|EDT77774.1| foldase protein PrsA [Clostridium perfringens NCTC 8239] Length = 325 Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 91/184 (49%), Gaps = 26/184 (14%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--------- 294 K +++S+++++ Y++NK+++ V+ L+FP ++EA +A+ ++ GK Sbjct: 149 KDVKVSDEDIKKYYDENKQQFVVKAGADVKHLLFPTEEEAQKAYDEIQSGKTTFDDLFNK 208 Query: 295 -------KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K +AE G+ D + +F K+++ + + L K G+ + + SFG Sbjct: 209 YEKNKDPKKEPIAENLGR--VDYNNSNFDKDFM------EGLKGL-KDGEISKPVKSSFG 259 Query: 348 YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 Y I +NI T ++ ++ K+ I + + K E ++D ++ ++ L + D++ Sbjct: 260 YHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQWKKDLNVKVYDDKLQE 319 Query: 407 REKI 410 KI Sbjct: 320 GLKI 323 >gi|148261232|ref|YP_001235359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum JF-5] gi|146402913|gb|ABQ31440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum JF-5] Length = 311 Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---Q 303 ++++ ++A Y+ + K PE Q++ Q+EA++ L KG KF LA++ Sbjct: 142 KLTDAAVKAYYDAHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362 + + LG F+K+ + AD+ F+L K G +T +H FG+ + + Sbjct: 202 PGAKNGGELGWFTKDEMVK-PFADAAFAL-KPGTYTKTPVHSQFGWHVIESQGKREKPVP 259 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 +VK I Q+ KA ED ++ Sbjct: 260 PLADVKDQIRQQI-TNKAVTAALEDARK 286 >gi|110799431|ref|YP_697171.1| peptidylprolyl isomerase [Clostridium perfringens ATCC 13124] gi|123049564|sp|Q0TMG9|PRSA_CLOP1 RecName: Full=Foldase protein prsA; Flags: Precursor gi|110674078|gb|ABG83065.1| putative foldase protein PrsA [Clostridium perfringens ATCC 13124] Length = 342 Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 88/178 (49%), Gaps = 13/178 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK-------- 294 K +++++++ Q Y++NK+++ + + + + L+F N++EA +A+ ++ GK Sbjct: 165 KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFT 224 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGY-VIAH 352 K+ E K +++ +LG E V D + L K+G+ + I FGY +I Sbjct: 225 KYENNKSENKKPIAE-NLGVVPAENSGLVQEFVDGLKPL-KEGEISKPIKTQFGYHIIQA 282 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + F +VK I ++ K SEK K D + ++ L + D++ KI Sbjct: 283 GATYEKGAQLPFDDVKSQIIQILKQQKDSEKFKADMDQWKKDLNVKVYDDKLQEGLKI 340 >gi|326404647|ref|YP_004284729.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum AIU301] gi|325051509|dbj|BAJ81847.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum AIU301] Length = 311 Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---Q 303 ++++ ++A Y+ + K PE Q++ Q+EA++ L KG KF LA++ Sbjct: 142 KLTDAAVKAYYDSHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTV 362 + + LG F+K+ + AD+ F+L K G +T +H FG+ + + Sbjct: 202 PGAKNGGELGWFTKDEMVK-PFADAAFAL-KPGTYTKTPVHSQFGWHVIESQGKREKPVP 259 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 +VK I Q+ KA ED ++ Sbjct: 260 PLADVKDQIRQQI-TNKAVTAALEDARK 286 >gi|187932868|ref|YP_001884407.1| peptidylprolyl isomerase [Clostridium botulinum B str. Eklund 17B] gi|187721021|gb|ACD22242.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum B str. Eklund 17B] Length = 343 Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 65/252 (25%) Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ------WFEKYKDNYR 225 +RPS+ L N+ VD V + + NA L Q F++Y+ N Sbjct: 106 LRPSDEEL---------NKEVDEAVNYYKTAYQTEEQYNAFLEQNGFTEDEFKEYQKNQA 156 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-KEAD 284 + Y+ D+ K +E+++D++Q Y++NKE FS T ++ F ++A+ Sbjct: 157 V-----VRYVYQDMV---KDVEVNDDDIQKYYDENKETQFS----TPGEIDFDKSLQQAN 204 Query: 285 EAFQSLKKGKKFIQLAEEQ---------GKSLSDISLGS--FSKEYIPDVSLADSIFSLA 333 E L G F ++A+E+ G SL I S + KE++ F Sbjct: 205 EIKSQLDGGADFSEVAKEKSQDPGTKDNGGSLGFIEYSSTKYVKEFMDG-------FKDL 257 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIK---------------PSFTVSFQEVKKDIANQMRIT 378 K+G+ + I FGY I V+ +K ++VK+DI Q+ Sbjct: 258 KEGEISQPIKSQFGYHIIKVTGVKDDGAEVAHILVADKGEGTVTPLEDVKEDIRGQLLQK 317 Query: 379 KAS----EKVKE 386 K S EK++E Sbjct: 318 KQSDVFNEKIEE 329 >gi|145551937|ref|XP_001461645.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429480|emb|CAK94272.1| unnamed protein product [Paramecium tetraurelia] Length = 1613 Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 26/170 (15%) Query: 465 WVQIKESIPARDR------KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 W Q++E IP R K+ + + V++ W +K + +SK N+L+ +Y + N Sbjct: 522 WAQLQEEIPDIGRIKVLGFKILDSVNQVEEQWNRLKRLNQKASKLNRLMGKYYSQVLNDE 581 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 +IG L Q++RM+ +KF D +E ++ L+ + Sbjct: 582 EIGIKLI-------QLSRMNQNDKFKAID---------LEEIQ----NECLATITILTDV 621 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 K+G + +K L DL++ + ++ HD+ ++ +LD Sbjct: 622 DKMGTISNLNKAACSLIGYAKTDLVNRKLNLIQPDLFSKYHDHFLENFLD 671 >gi|258513569|ref|YP_003189791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum acetoxidans DSM 771] gi|257777274|gb|ACV61168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum acetoxidans DSM 771] Length = 327 Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 25/148 (16%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------------QKEADEAFQSLKKG 293 + +E+Q Y++NKE++ + E V ++ +K A + +K G Sbjct: 148 TEEEVQEYYDQNKEQFKTAEQYEVRHILISTDPDDAGNVKHTEAEAEKLAVQVLADIKNG 207 Query: 294 KKFIQLAEEQGKSLSDISLG---SFSK-EYIPDVSLADSIFSLA-KKGDFT-PVIHGSFG 347 K F LA E+ + L G +F K + +P+ A +LA K G++T + FG Sbjct: 208 KDFAALAREKSEDLGSKDNGGLYTFKKGDTVPEFEKA----ALALKPGEYTREPVKTQFG 263 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQM 375 Y I + + P+ SF EVK I Q+ Sbjct: 264 YHIIKLEKLIPARDQSFAEVKDGIKQQL 291 >gi|206560348|ref|YP_002231112.1| putative exported isomerase [Burkholderia cenocepacia J2315] gi|198036389|emb|CAR52285.1| putative exported isomerase [Burkholderia cenocepacia J2315] Length = 260 Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE- 302 KK + ++ E++A Y++ + + ++ N+++A + +K G KF LA++ Sbjct: 107 KKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDLAKQY 166 Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 GK+ D+ S K Y+P+ + A + D TPV FG+ I V +I+ Sbjct: 167 SKDPGSGKNGGDLDW-SDPKAYVPEFAAAAQKLQKGQMTD-TPV-KTQFGWHIIRVDDIR 223 Query: 358 PSFTVSFQEVKKDIANQM 375 F +VK IA Q+ Sbjct: 224 DIAPPPFDQVKAQIAQQL 241 >gi|146329199|ref|YP_001209808.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A] gi|146232669|gb|ABQ13647.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A] Length = 621 Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 89/210 (42%), Gaps = 19/210 (9%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + Y ++L +T +F+G + L + R + + R V L A + Sbjct: 162 VSQYYQLLGKT----VFIG-----DELQNAFYRLFSQQRDVTLFTLPLAEKIASVKTTPE 212 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 VL ++E+ + Y + E + Y++ D EIS EL A + + + R Sbjct: 213 VLRAYYEENRARYMSDETVSVRYVILDAAHLAGNAEISEQELAAA----RAAMVNDDRRD 268 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQ--LAEEQGKSLSDISLGSFS---KEYIPDVSLA 326 + ++F ++ A++ +L +G++ +A + K L+ S G F K P Sbjct: 269 GQYIIFDDKAVAEQTAAALAQGERSFADIVAAIEKKELAGQS-GLFDLHKKGEGPSEKAD 327 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + +FSL K GD + + +G ++ + + Sbjct: 328 EVLFSLQKTGDTSALFDTEYGAMLVQLGKV 357 >gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila DSM 6192] gi|306533370|gb|ADN02904.1| PPIC-type PPIASE domain protein [Spirochaeta thermophila DSM 6192] Length = 336 Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 19/157 (12%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVF--PN-QKEADEAF--------QSLK 291 K + +S++E +A Y++N E++ PE IR L+ P+ KE +EA + LK Sbjct: 167 KHLSVSDEEARAYYDENPEQFEQPEQIRARHILIRLDPDASKEEEEAAYAKIHEVQEKLK 226 Query: 292 KGKKFIQLAE--EQGKSLSDIS-LGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 +G F +LA +G S + LG F + + +P + ++ F+L + + V+ +G Sbjct: 227 QGADFAELARTYSEGPSAPNGGDLGFFGRGQMVP--AFEEAAFAL-EVNQVSDVVRTEYG 283 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + V++ + + SF+EVK + + K+SE + Sbjct: 284 LHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAI 320 >gi|302879437|ref|YP_003848001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] gi|302582226|gb|ADL56237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] Length = 261 Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 11/136 (8%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 V E+ KK +++ +LQA YE K K E + ++ + EA L K KF + Sbjct: 105 VQEQLKKNPVTDAQLQAGYETLKSKLGDKEY-SARHILVATEAEARNLIAQLGKKAKFEK 163 Query: 299 LAE---EQGKSLSDISLG-SFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAH 352 LAE + G + +LG + K ++ A+++ +L KKG++T PV FG+ + Sbjct: 164 LAEKSKDTGSAERGGALGWTVPKNFVE--PFANALLNL-KKGEYTKDPV-QTQFGWHVIK 219 Query: 353 VSNIKPSFTVSFQEVK 368 + +++ SF E+K Sbjct: 220 LDDMRALKVPSFDEIK 235 >gi|182420001|ref|ZP_02951235.1| foldase protein PrsA [Clostridium butyricum 5521] gi|237669545|ref|ZP_04529525.1| prsA family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376038|gb|EDT73625.1| foldase protein PrsA [Clostridium butyricum 5521] gi|237654989|gb|EEP52549.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 343 Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 26/186 (13%) Query: 208 PSNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEK-EKKIEISNDELQAEYEKNKEK 263 P +A L Q E +D+Y+ +Y + Y L V E +E+++D+ +A Y++NK+ Sbjct: 129 PDDAQLQQVLEANGFTEDSYK--DYAKKQYKLQKVQEAITADVEVTDDDAKAYYDENKDS 186 Query: 264 YFSPEIRTVEQLVFPNQK-------------EADEAFQSLKKGKKFIQLAEEQGKSLS-- 308 ++ + +K +A+E L G F QLA E G + Sbjct: 187 QYTVGAGANAAHILIAEKGSDGNIDFDASLAKANEVKAKLDAGADFAQLASEYGTDGTKD 246 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 D+ ++++ LA F +G + I FGY I + IK F Sbjct: 247 KGGDLGFVAYNQANYDQDFLAG--FKQLSEGQISDPIKSQFGYHIIKATGIKDEVVTPFD 304 Query: 366 EVKKDI 371 +VK+ I Sbjct: 305 DVKEQI 310 >gi|326791007|ref|YP_004308828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] gi|326541771|gb|ADZ83630.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] Length = 246 Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust. Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 15/142 (10%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--- 302 + S++E++ YE ++ ++ S E ++ +EA++ + +K G F + A++ Sbjct: 91 VTASDEEVKEYYETHQGQFKSDEAAKANHILVATLEEAEKVAEEIKAGLSFAEAAKKYST 150 Query: 303 -----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 QG +L + + G +P+ A F+++ G+ + + FGY I + + Sbjct: 151 CPSASQGGALGEFTRGRM----VPEFETA--AFAMS-PGEISAPVQTQFGYHIIELEALT 203 Query: 358 PSFTVSFQEVKKDIANQMRITK 379 P+ + VK+ + Q + K Sbjct: 204 PAGLSPLEAVKEQVKEQCLLAK 225 >gi|311067484|ref|YP_003972407.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942] gi|310868001|gb|ADP31476.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942] Length = 284 Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 20/173 (11%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 AK++ ++ +D + + + D +A+ Q+ E Y +++ Y L Sbjct: 64 AKKYKVTDKEIDKKL--KEYKTQLGDQYSALKEQYGEDYL-------KEQVKYELLTQKA 114 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 E I++++D+++ +E K K + I + ++ A+E + LKKG+KF LA+ Sbjct: 115 AEDNIKVTDDDVKEYWEGLKGKIHTSHI------LVADKDTAEEVEKKLKKGEKFEDLAK 168 Query: 302 EQGKSLSDIS---LGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 E S + LG SK+ D + + + F L KKG+ + + FGY I Sbjct: 169 EYSTDSSANNGGDLGWISKDDTQLDATFSKAAFKL-KKGEVSDPVKTQFGYHI 220 >gi|113867525|ref|YP_726014.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] gi|113526301|emb|CAJ92646.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] Length = 264 Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 228 EYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E R++ + V E K ++D EL+ +Y+K K ++ + + ++ + +A Sbjct: 88 EQARLNVLAGAVFEDYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAKAI 147 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPV 341 +K G KF +A+ K + G + S Y+P+ S A + KKG T Sbjct: 148 IAKIKGGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVPEFSAA---MTGLKKGQLTDT 204 Query: 342 -IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + FG+ I + +++ + SF+EVK + + Sbjct: 205 PVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQML 239 >gi|171058521|ref|YP_001790870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170775966|gb|ACB34105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 275 Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 18/176 (10%) Query: 228 EYKRISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E R S ++ ++ +E +KK +++ E++AEY+K K E + ++ + EA Sbjct: 100 EIARQSLLIRELFNEYQKKNPVTDAEIKAEYDKVKSGAGEKEYH-AKHILVEKEDEAKAL 158 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG-----SFSKEYIPDVSLADSIFSLAKKGDFT-P 340 LK G KF +LA++ K G + Y+P+ S A + L +KG +T Sbjct: 159 IAELKGGAKFDELAKKASKDPGSAQNGGDLDWAAPANYVPEFSQA--MVKL-EKGKYTET 215 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN---QMRITKASE----KVKEDYK 389 + FGY I + +++ + +EVK + Q ++ K E K K DYK Sbjct: 216 AVKSQFGYHIILLDDVREAQFPPLEEVKAQLEQRLAQQKMGKYREELRSKAKTDYK 271 >gi|296445269|ref|ZP_06887228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] gi|296257224|gb|EFH04292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] Length = 335 Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------SLKKGKKF 296 S +ELQ Y+ N+ + P + + + K+AD A + LK G F Sbjct: 161 SEEELQKAYDANRSSFVVPRQFQLGHIFVQSPKDADRATEDKAKKTLEDIQRKLKSGADF 220 Query: 297 IQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A+ Q ++ LG ++ I P++ + L KG + I G+ + + Sbjct: 221 AAVAKAQSEAKDGGELGWLAEGQIRPEIR--TRVMGLV-KGAVSEPIQLDDGWHFVKLID 277 Query: 356 IKPSFTVSFQEVKKDIANQMRITKA 380 K S T E ++ +A QMR+ +A Sbjct: 278 TKASTTRPLAEAREQLAQQMRVERA 302 >gi|52079482|ref|YP_078273.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580] gi|52784844|ref|YP_090673.1| hypothetical protein BLi01072 [Bacillus licheniformis ATCC 14580] gi|319646731|ref|ZP_08000960.1| PrsA protein [Bacillus sp. BT1B_CT2] gi|52002693|gb|AAU22635.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580] gi|52347346|gb|AAU39980.1| PrsA [Bacillus licheniformis ATCC 14580] gi|317391319|gb|EFV72117.1| PrsA protein [Bacillus sp. BT1B_CT2] Length = 286 Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 22/213 (10%) Query: 170 GGMRPSNLLLDQA---KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 G N+L+ Q ++ ++ +D + N + ++ D N ++ Q E + Sbjct: 49 AGADALNMLVQQKVLDDKYDVSDKEIDKKL--NEYKKSMGDQLNQLIDQKGEDF------ 100 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 ++I Y L + I++++D+++ Y+ K K + ++ +K A+E Sbjct: 101 -VKEQIKYELLMQKAAKDNIKVTDDDVKEYYDGLKGKIH------LSHILVKEKKTAEEV 153 Query: 287 FQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + LKKG+KF LA+E G + LG K+ D + F+L K G+ + + Sbjct: 154 EKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFAL-KTGEISGPVK 212 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 FGY I + + +E+KK++ Q + Sbjct: 213 SQFGYHIIKKDEERGKYEDMKKELKKEVQEQKQ 245 >gi|220932053|ref|YP_002508961.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168] gi|219993363|gb|ACL69966.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168] Length = 495 Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 15/139 (10%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQL 299 K +E+S DE++ YEK P + V + +KEA ++A + L++GK F ++ Sbjct: 169 KGVEVSEDEIREAYEK-----VRPALIAV-NIEGEKKKEARAKIEKALKELEEGKAFGEV 222 Query: 300 AEEQGK-SLSDISLGSFSKE--YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + L D LG + ++P L D F L +KG + +I G GY I V + Sbjct: 223 AAKYSDLKLKDGDLGFIGRNNGFLPQEVL-DKAFEL-EKGKTSDIIEGEKGYYIVKVIDK 280 Query: 357 KPSFTVSFQEVKKDIANQM 375 K + F++ ++++ +Q+ Sbjct: 281 KLARGEEFEKSREELKDQL 299 >gi|110803835|ref|YP_699739.1| peptidylprolyl isomerase [Clostridium perfringens SM101] gi|123047143|sp|Q0SQ68|PRSA_CLOPS RecName: Full=Foldase protein prsA; Flags: Precursor gi|110684336|gb|ABG87706.1| putative foldase protein PrsA [Clostridium perfringens SM101] Length = 342 Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 20/158 (12%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTV--EQLVFPNQKEADEAFQSLKKGKK-----F 296 K I+++++E Q Y++NK K F + + V L+F N++EA +A+ ++ GK F Sbjct: 166 KDIKVTDEEAQKYYDENK-KQFEVQAKGVLARHLLFENEEEAQKAYDEIQSGKTTFNDLF 224 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVS------LADSIFSLAKKGDFTPVIHGSFGY-V 349 + + + + I+ SF +PD + + + SL K+G+ + I FGY + Sbjct: 225 TKYENNKLEKKTPIA-ESF---VVPDENAQVAKEFVEGLKSL-KEGEISKPIKTQFGYHI 279 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 I + + + F EVK I ++ K S+K+K D Sbjct: 280 IQAGATYEKGAQLPFNEVKSQIIQILKQQKDSQKLKSD 317 >gi|149175489|ref|ZP_01854110.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797] gi|148845757|gb|EDL60099.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797] Length = 856 Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 27/157 (17%) Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFY- 186 +NK S F + G E + D + L M +RP +L DQ FY Sbjct: 216 NNKLSRKAFQETCQQLGKTEGQIYDIFRDQLQARLAFQM----LRPEVSLTPDQYWNFYK 271 Query: 187 -FENRS-VDYIVLNNR----HVPAIADPSNAVLTQWFEKYKDNY-----------RAPEY 229 F R ++ + L + VPA PS+A +FE YK + R P+ Sbjct: 272 KFNVREELELVALPVKDFEGEVPA---PSDAEKKAFFETYKTVFPGEKGPGSPGLRQPQK 328 Query: 230 KRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYF 265 ++ Y++ D + EK++ I++ E+ A YE NKE+ + Sbjct: 329 VQVEYLMADYVDTEKQVPPITDKEIAAFYEDNKERLY 365 >gi|327438069|dbj|BAK14434.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris StLB046] Length = 324 Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 5/144 (3%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 I + +E + YE NK Y P ++ ++++A+ + LK G F LA E Sbjct: 161 IVVKENEAKKYYEDNKSIYNIPTTHRTSIIIVNSKEDAERVEKELKDGSDFAVLAREHSL 220 Query: 306 SLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + SLG S + D ++ + L +K P + Y I V+ Sbjct: 221 DTASASLGGDIGFISSSQSAVDPAILPEVEKLKEKETSKPFVLSDGRYAIVKVTENMEGQ 280 Query: 361 TVSFQEVKKDIANQMRITKASEKV 384 + SF EV+ + Q+ + + S + Sbjct: 281 SFSFDEVEGHVKRQLALEQLSPSI 304 >gi|116872876|ref|YP_849657.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone) [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741754|emb|CAK20878.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone) [Listeria welshimeri serovar 6b str. SLCC5334] Length = 294 Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 11/144 (7%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y L E +++S+ +L+ Y K + P+I TV ++ ++ A E L Sbjct: 105 NLEYNLLVQKATEANMKVSDSKLKTYY-----KTWEPDI-TVRHILVDDEATAKEIQTKL 158 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFG 347 K G+KF LA+E + + G + P D + + ++L K D + ++ ++G Sbjct: 159 KNGEKFSDLAKEYSTDTATKTNGGLLDPFGPGEMDETFEKAAYALENKDDISGIVKSTYG 218 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDI 371 Y + + +K + S+++ K ++ Sbjct: 219 YHLIQL--VKKTEKGSYEKEKANV 240 Searching..................................................done Results from round 2 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040835|gb|ACT57631.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 631/631 (100%), Positives = 631/631 (100%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA Sbjct: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 >gi|315122544|ref|YP_004063033.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495946|gb|ADR52545.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 632 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 377/633 (59%), Positives = 486/633 (76%), Gaps = 3/633 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLEIIRKASRTWVAKIFLVVLFVPF++WG+SDA FS SG STVVSVG QK+P S+FI W Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFIVWGVSDAFFSFSGKSTVVSVGNQKIPLSAFIQIW 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 QEL +S++IGF V ERARS LDKKI ++LV+GA +DQFIED GLEA RV+ I Sbjct: 61 TQELDALSRQIGFAVPPERARSAELDKKITEHLVAGAAIDQFIEDTGLEAPDSRVFEFIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F+GKD KFSH+VF+S+LA+EG++EKEY++ Y KM+SR+D+ MF+GG + S L + Sbjct: 121 SQPIFYGKDGKFSHEVFLSKLAQEGVSEKEYVETYKKMISRSDIAEMFIGGDKSSRFLAE 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R Y ENR+++Y+VLN VPA+ DP+ VL +WF K+K NYRAPEYK SYI DV+ Sbjct: 181 QMMRHYSENRTIEYVVLNAHDVPAVVDPAPVVLAEWFAKFKGNYRAPEYKSFSYIALDVN 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EKEK + ++ EL++EYEKNK +YFSPEIRTVEQLVFPNQKEA+EA +SLKKGKKFIQLA Sbjct: 241 EKEKNVVVTESELRSEYEKNKNQYFSPEIRTVEQLVFPNQKEAEEALKSLKKGKKFIQLA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +E+GKSLSDISLGSFSKEYIPD SLAD IF+LAK+GD+T +IHGSFGYVIAHVS IKPSF Sbjct: 301 KEKGKSLSDISLGSFSKEYIPDPSLADPIFALAKEGDYTSLIHGSFGYVIAHVSRIKPSF 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F+++KK I +++R+ KAS+ V E+YK+ ++ L+ G +M +I+ +EK DLP +++ Sbjct: 361 TTPFEQIKKSIEHKVRLAKASQVVLEEYKKAQDLLSSGKTMKDIATKEKFSFGDLPPLNY 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D+K + V IPYK+ LL R+F ++D L D+T+ LPDGSY+ ++KE IPARDRKLE Sbjct: 421 LGMDMKNRPVQKIPYKDHLLSRIFNQEDALVTDNTIQLPDGSYVIFKVKEVIPARDRKLE 480 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM--D 538 EVLT+VKKDWK+++ E V +KA LVL +K GK+F D+ +L + + I RM + Sbjct: 481 EVLTEVKKDWKSIQQTEAVLNKAQNLVLACNK-GKSFADMASSLRKFISVKSNITRMTKE 539 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 +E DGIS+VFSGPV MVK FPI+NG VVFKV SK+ P+ +K KFI L +M+ Sbjct: 540 SEEGILENDGISRVFSGPVGMVKSFPIKNGAEQVVFKVVRSKINPMDDKKKFILSLEKMI 599 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 KD+LDS IAYL+ QY V V+++LI +Y D K Sbjct: 600 GKDMLDSSIAYLRQQYPVYVNESLITKYFDQNK 632 >gi|86357790|ref|YP_469682.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CFN 42] gi|86281892|gb|ABC90955.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CFN 42] Length = 646 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 210/630 (33%), Positives = 359/630 (56%), Gaps = 7/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG QKV + F ++ Sbjct: 17 MFHLLRRAAQTWVAKLLLLLLVASFGIWGISRELISGGSSTTVVTVGDQKVGVTEFQLAY 76 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ I Q+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I Sbjct: 77 QRQVTSIGQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 136 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLID 196 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L N ++ I P++ VL WFE K YRAPEY+++ Y+ Sbjct: 197 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLASWFEGVKQRYRAPEYRKLIYLKLQPA 256 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ +EK K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 257 DIADAATVTDDQIREAFEKGKDSYRTPESRTIEQLTFASKDLATAAETALKGGTSFDQLL 316 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIKP Sbjct: 317 TDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKPET 376 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + K+ ++ + VD Sbjct: 377 VKNFDEVKEDIRKQLALSNASQEVINVHDRIEDMRAGGSTLEDIAGQLKLKAVTVDAVDA 436 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GKEV +P K+QLL F + + + + + Y+W ++E P RDR + Sbjct: 437 TGVDKDGKEVKDLPAKQQLLGEAFKTEVGVDA-SPLPIGNDGYVWFNVREITPDRDRPIA 495 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + E++ KA +L + K G DI LG ++ + + I R + Sbjct: 496 EVREKAVEDWTAEQQKAELAKKAEELKAQAQK-GAALADIAAPLGIAVESKSGITR-STD 553 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596 + G + FSGPV+ V + + ++ KVT P + +D ++ + Sbjct: 554 DPVLGRAAVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTSDVLNNRDAQLTAMAN 613 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 D+LD ++ L++QY +++ L ++ Sbjct: 614 AAGDDILDQMVNLLQTQYGASINQTLAEQA 643 >gi|190891851|ref|YP_001978393.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 652] gi|190697130|gb|ACE91215.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 652] Length = 630 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 212/629 (33%), Positives = 357/629 (56%), Gaps = 7/629 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG Q V + F ++ Sbjct: 1 MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RSVDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+ Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIK Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T +F EVK +I Q+ ++ AS++V + +E+ A G ++++I+ + K+ ++ + VD Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDHIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR + Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + E++ KA++L E K G DI LG ++ + + I R + Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-STD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596 + G G+ FSGPV+ V + + ++ KVT P + +D ++ + Sbjct: 538 DPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAMAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 D+LD ++ L++QY V+ L ++ Sbjct: 598 AAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626 >gi|158423833|ref|YP_001525125.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Azorhizobium caulinodans ORS 571] gi|158330722|dbj|BAF88207.1| PPIC-type PPIASE domain protein [Azorhizobium caulinodans ORS 571] Length = 638 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 160/631 (25%), Positives = 308/631 (48%), Gaps = 6/631 (0%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ +RK + +AK+FL+VL V F++WG+S + S TV +G ++ ++ + Sbjct: 11 LQNLRKGASGLIAKVFLLVLTVSFVLWGISGVFTNYSTG-TVAEIGGTQISTDAYRQQYL 69 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 ++ I ++ G + ++AR+ G D+++L+ +++ ATLD+ +GL + I Sbjct: 70 DQIQRIGRQAGRAITPDQARAFGFDRQVLNQMITEATLDEAARKLGLGMSDALIADSIRD 129 Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F F L G+ E+ ++ K + R ++ GG R +L Sbjct: 130 NPALRPPGATAFDPAYFQQLLQANGLTEQRFLASERKRVLRQQLIESL-GGARAPEVLKT 188 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E R+V Y+ + + VPA A P++ L +++ +K +RAPEY++++ ++ Sbjct: 189 AVHSFENEERAVSYLDVTSSSVPAPAAPTDEQLKAYYDGHKVVFRAPEYRKLTLLVLTPA 248 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 I+IS+ + +A Y++N ++ +PE R V+Q+VFP++ +A A +K G F +A Sbjct: 249 TLAPWIQISDADAKAAYDRNAARFGTPEQRDVQQIVFPSEADAKAALDKIKGGTSFADIA 308 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +G S D +LG +K I D +AD+ F+L G + + G FGY + HV+ I P+ Sbjct: 309 KARGLSDKDTNLGLVAKSAIIDPKVADAAFALPADG-TSDPVQGRFGYALVHVTTIVPAT 367 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 F EV+ + + + +A ++ + + +E+ + G S+ E +++ + + VD Sbjct: 368 VKPFAEVEAGLRRDLALERARRELLDKHDAIEDERSSGASLSETAQKLGLTPEVVDAVDR 427 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +G++ G EV IP + +L F + D +G Y+W + E P+R+R + Sbjct: 428 SGREPSGAEVTDIPDRVNVLSAAFSSRPGVDNDPIQLAQNGGYVWFDVNEVTPSRERPFD 487 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V W + V +KA L+ E + GK+ D+ G + T + + R E Sbjct: 488 EVREQVASRWSEDEVVRAVEAKAKGLLTEL-EAGKSMADVASANGLEVKTASGLKRGRAE 546 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 F + +++VF + +VF+VT + P + + L Q + Sbjct: 547 GD-FTTEAVAKVFGVALNGYGVALGTANAEQLVFQVTKVESPPSANDIRIDNQLQQQVEN 605 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 D+L + L+ Q +T++ +Q+ + + Sbjct: 606 DILQQYLTALQGQIGLTINQRAVQQAVGANQ 636 >gi|90423968|ref|YP_532338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] gi|90105982|gb|ABD88019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] Length = 662 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 176/637 (27%), Positives = 299/637 (46%), Gaps = 15/637 (2%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IRKAS WV K +++ L + F +WG++D +F G ST+ +G ++ F Sbjct: 30 MLRGIRKASSNWVGKTIMIIVMSVLILSFAVWGIAD-IFKGFGQSTLAKIGSTEISTEQF 88 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + L I ++ G + ++AR+ G+D+++L V+ A LD+ IGL Sbjct: 89 RQLYTERLQQIGRQFGRPLTQDQARAFGIDRQVLQQAVAEAALDEDARRIGLGQSDAETM 148 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ YI K+ R + G + P Sbjct: 149 RTIVSDPNFRGTNGGFDRARFAQAIRQFGYTEQRYIAEQRKVSLRRQIAGTLTAELEPPK 208 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LLD RF E RS+DY+ L+ H IA PS VL ++ +K +RAPEY++IS++ Sbjct: 209 TLLDALTRFQNEQRSIDYVKLDANHAGTIAPPSPEVLAAYYADHKTQFRAPEYRKISFVA 268 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +S+++ + YE ++K+ +PE R + Q+VFPN +EA A + G F Sbjct: 269 LTPEAVAKWTTVSDEDAKKVYEARRDKFSTPERRQITQIVFPNAEEAQAARAKITGGLSF 328 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+G S +D LG SK I D ++AD+ F+L D + I G FG + V I Sbjct: 329 DDLAKERGLSPADADLGLVSKAEILDPAVADAAFALPAN-DVSQPIPGRFGVTLLKVGKI 387 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P SF+ V + + I KA + + + ++E+ G S+ E +++ + ++ + Sbjct: 388 EPGSQQSFESVAPALKRDIAIDKARASIADLHNKMEDARGGGASVVEAAQKLGLAAVTIE 447 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D +G+ G AIP L F D + D G Y+W + P+R+ Sbjct: 448 ALDRSGRAPDGNP-TAIPQGLDLASAAFSSDVGVDNDALAF--GGGYVWFDVLGVTPSRE 504 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R LEEV V+ W+ + + + +A +V + GK D+ G T R Sbjct: 505 RSLEEVKPQVEARWRDEQISTRLRDQATDMVQKVEAGGK-LADVAAAAGLKTETATAFKR 563 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592 D + F + V P +G ++VF+VT+ V PV ++ K Sbjct: 564 -DGSVAGLPSSVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKD 622 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L + + +LL +A L+++ ++++ + + Sbjct: 623 TLQRRLADELLAQYVARLETEIGTKINESAVAQATGA 659 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 1/148 (0%) Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324 EQ+ + +A + Q ++ G K +A G + S Sbjct: 513 QVEARWRDEQISTRLRDQATDMVQKVEAGGKLADVAAAAGLKTETATAFKRDGSVAGLPS 572 Query: 325 -LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + ++ F AK G +++ V+++ E + + ++ A E Sbjct: 573 SVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKDTLQRRLADEL 632 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIV 411 + + RLE + + +++ Sbjct: 633 LAQYVARLETEIGTKINESAVAQATGAA 660 >gi|209549414|ref|YP_002281331.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535170|gb|ACI55105.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 630 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 204/630 (32%), Positives = 359/630 (56%), Gaps = 7/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ +++L F IWG+S +L + S S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGSNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + Q+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVASLGQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + KF ++F+SRL I + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLID 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L N ++ I P++ VL WF+ K Y+APEY+++ Y+ Sbjct: 181 ALKLYGNESRSIDYLLLTNANIEPIKAPADDVLAAWFDGVKQRYQAPEYRKLVYLSLQPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFTSKDLAVAAETALKGGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIKP Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVEGSFGSVILRITNIKPET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T +F EVK+DI Q+ ++ AS++V + R+E+ A G ++++I+ + K+ ++ + VD Sbjct: 361 TKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLKAVTVDAVDM 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GKEV IP K+QLL F + + + + + Y+W ++E P R+R + Sbjct: 421 TGADKDGKEVKDIPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPTRERPVA 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + + +K + + + +G DI LG ++ + + + R + Sbjct: 480 EVREKAVEDWTAEQ-QKAELAKKAEALKAEAAKGTALADIATPLGIAVESKSGVTR-ATD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596 + G G++ FSGPV+ V + + ++ KVT P + +D I+ + Sbjct: 538 DPVLGRAGVTAAFSGPVDAVASAVGADPSTQILMKVTEVNSEPTSDALNNRDAQITAMAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 D+LD ++ L++QY ++ L ++ Sbjct: 598 AAGDDILDQMVNLLQTQYGAQINQTLAEQA 627 >gi|327192898|gb|EGE59819.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CNPAF512] Length = 630 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 210/629 (33%), Positives = 355/629 (56%), Gaps = 7/629 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG Q V + F ++ Sbjct: 1 MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RSVDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+ Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPT 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +L G F QL Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALNSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G T V+ GSFG VI ++NIK Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTSVVDGSFGPVILRITNIKAET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T +F EVK +I Q+ ++ AS++V + R+E+ A G ++++I+ + K+ ++ + VD Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR + Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + E++ KA++L E K G DI LG ++ + + I R + Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-STD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596 + G G+ FSGPV+ V + + ++ KVT + +D ++ + Sbjct: 538 DPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQSTGDVLNNRDAQLTAMAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 D+LD ++ L++QY V+ L ++ Sbjct: 598 AAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626 >gi|241204737|ref|YP_002975833.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858627|gb|ACS56294.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 630 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 208/630 (33%), Positives = 362/630 (57%), Gaps = 7/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ L++L V F WG+S L + S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLLLLLVVSFGAWGVSHQLLTGGNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++F+SRL I + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGRFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L N ++ I P++ VL WFE K YRAPEY++++Y+ Sbjct: 181 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLAYLKLQPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLATAAETALKSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F++++ G TPV+ GSFG VI V+NIK Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSRDGGTTPVVDGSFGSVILRVTNIKSET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + K+ ++ + VD Sbjct: 361 AKNFDEVKEDIRKQLSLSNASQEVINVHDRIEDLRAGGSTLEDIAGQLKLKAVTVDAVDM 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D G+EV IP K+QLL F + + + + + Y+W ++E P RDR + Sbjct: 421 TGADKDGQEVKDIPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPVA 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + E++ KA+ L E +K+G DI LG ++ + + + R + Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGVTR-STD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596 + G G++ FSGP++ V + + ++ KVT P + +D I+ + Sbjct: 538 DAVLGRAGVTAAFSGPLDTVASAVGADPSTQILMKVTEVNTQPTGDVLNNRDAQITAMAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 D+LD ++ L++QY ++ L ++ Sbjct: 598 AAGDDILDQMVNLLQTQYGAEINHTLAEQA 627 >gi|116252238|ref|YP_768076.1| peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv. viciae 3841] gi|115256886|emb|CAK07980.1| putative peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv. viciae 3841] Length = 630 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 209/630 (33%), Positives = 361/630 (57%), Gaps = 7/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ L++L F +WG+S L S S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLLLLLVASFGVWGVSHELLSGGNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++F+SRL GI + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGRFDRELFISRLQNAGIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RSV+Y++L N ++ I P++ VL WFE K YRAPEY+++ Y+ Sbjct: 181 ALKLYGDESRSVEYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLVYLKLQPG 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLAAAAETALKSGTSFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+++ +PD ++AD+ F++++ G TPV+ GSFG VI V+NIK Sbjct: 301 SDQGKTASDVLLGEFTEDKVPDQAVADAAFAVSRDGGTTPVVDGSFGPVILRVTNIKSET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + + ++ + VD Sbjct: 361 AKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGSTLEDIAGQLNLKAMTVDAVDM 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR + Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPVT 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + E++ KA+ L E +K+G DI LG ++ + + + R + Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADALKAE-AKKGTALADIATPLGIAVESKSGVTR-STD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596 + G G++ FSGPV+ V + + ++ KVT P + +D I+ + Sbjct: 538 DAVLGRAGVTAAFSGPVDTVASAVGADPSTQILLKVTEVNTQPTGDVLNNRDAQITAMAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 D+LD ++ L++QY ++ L ++ Sbjct: 598 AAGDDILDQMVNLLQTQYGAQINQTLAEQA 627 >gi|92117281|ref|YP_577010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis X14] gi|91800175|gb|ABE62550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis X14] Length = 635 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 167/638 (26%), Positives = 310/638 (48%), Gaps = 13/638 (2%) Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W+ KI + +L V F IWG++D +F G S + +VG ++ F Sbjct: 1 MLRGIRNASSNWLGKILMSIVMGLLIVAFGIWGIAD-IFHGFGQSNLATVGSTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L ++++ G ++ ++ R++GLD+++L +++ A LD+ GL A + Sbjct: 60 RQIYNDRLQQLARQFGRSLSPDQVRALGLDRQVLQQVIAEAALDEDARRKGLNASDDEIR 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +I P F G ++ F F + + G E+ Y+ R ++ G G+ PS Sbjct: 120 RQIMSDPNFKGANDAFDPARFAGLIRQMGYTEQRYVTEQRHTTLRREIAGTVAAGVEPSK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LL+ F E R++DY+ L I P+ L +F+ +K +RAPE+++I++++ Sbjct: 180 TLLEMLNHFQNEQRTIDYVKLGVPQAGTIDPPTPEQLASYFDAHKVQFRAPEFRKIAFVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +S+++ + YE+ K+K +PE R + Q+VFPN EA A + G F Sbjct: 240 MTPEGIAKTTAVSDEDAKKAYEQQKDKLSTPEKRQLWQIVFPNVTEAQAARSKIAGGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + SD+ LG SK I D ++A++ FSL K + + I G FG + V I Sbjct: 300 DDIAKERNLAASDVDLGIISKSEIIDPAVAEAAFSL-KADEVSQPIQGRFGVALVKVGKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P ++ V + + + + +A +V + + ++E+ G S+ E +++ + ++ + Sbjct: 359 EPGNQPTYDSVAAKLKHDIAVDRARAEVNDLHNKMEDERGGGASVLEAAKKLGLTAVTID 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ GK V IP + L+ + F D + + T+ + D ++W + P+RD Sbjct: 419 AVDRSGRTPDGKPVTGIPPQVDLIAQAFASDVGVD-NETLQVGDNGFVWFDVLGVTPSRD 477 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + + + +KA +V + + GK D LG + + + R Sbjct: 478 RTLDEVKDKVETGWRDEQISSRLMTKATDMVHKLDQGGK-LADEAAGLGLKVENASALKR 536 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592 D I+ VF P G +VVF+VT+ KV + E K Sbjct: 537 -DATAAGLPAAVIAAVFRTAKGGAGQAPGAGGEEWVVFRVTDVKVPSLDLASDEMKKLKD 595 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 + + ++ + + IA L+++ TV+ + + Sbjct: 596 SIQRSLSDEDIGQYIARLETEIGTTVNQAAVAQITGAN 633 >gi|86749913|ref|YP_486409.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris HaA2] gi|86572941|gb|ABD07498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris HaA2] Length = 633 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 158/637 (24%), Positives = 305/637 (47%), Gaps = 15/637 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS WV K I + VL + F +WG++D +F G ST+ ++G ++ F Sbjct: 1 MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIAD-IFRGFGRSTLATIGGTEITTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I ++ G + ++AR+ G+D+++L +++ A LD+ +GL Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G F + F + + G E+ YI K+ R + G G+ PS+ Sbjct: 120 KSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSS 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L A +F E R+++Y+ L + V I PS L ++E +K +RAPEY++++++ Sbjct: 180 TMLQVASQFQNEQRAIEYLKLTDAQVGTIDPPSPEALAAYYEDHKTQFRAPEYRKLAFVT 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K ++S+ + + +++ K+K +PE R V Q+VFP+ +EA A + +G F Sbjct: 240 VTPDSIAKWTDVSDADARKLFDQRKDKLSTPEKRQVSQIVFPSGEEAQAARTKIAEGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A ++G +D+ LG SK + D ++A++ F+L + + I G+FG + VS + Sbjct: 300 DDIATQRGLKPADVELGMVSKAEMLDPAVANAAFALPLN-EVSQPIQGAFGTALVRVSKV 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P S++ + I + + +A +V+E + ++E+ A G ++ E ++ + ++ + Sbjct: 359 EPGVQPSYESLASTIKRDVSLERARAQVQELHDKMEDARAGGANVIEAAKTLGLNAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D +G+ G+ V IP +L F D + + Y+W + P+R+ Sbjct: 419 AIDRSGRGPDGQPVKDIPQGLELATAAFNSDVGVDTESINY--QNGYVWFDVLGVTPSRE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+T + + + A ++V + GK ++ G + T + R Sbjct: 477 RSLDEVKDQVEARWRTEQVTSRLRTMAAEMVQKLGTAGK-LAEVA-PQGVKVETATGLKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592 + + + VF + G + V++VT+ + PV E K Sbjct: 535 -EGASAGVPDTVVEAVFRTQKDAFGQSQGGTGNEWFVYRVTDVTIPPVDLASAETKKLKD 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L Q MN + + IA+++ Q ++ + + Sbjct: 594 ALVQRMNDEQVGEYIAWVEKQIGTKINQQAVAQATGA 630 >gi|27379919|ref|NP_771448.1| peptidyl-prolyl cis-trans isomerse [Bradyrhizobium japonicum USDA 110] gi|27353072|dbj|BAC50073.1| blr4808 [Bradyrhizobium japonicum USDA 110] Length = 632 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 168/639 (26%), Positives = 306/639 (47%), Gaps = 15/639 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K + + VL + F IWG++D +F G STV +GR ++ + F Sbjct: 1 MLRGMRKASSNWLGKTIMAVVMGVLIISFGIWGIAD-IFRGFGQSTVAKIGRTEISLNEF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L IS++ G + ++AR+ GLD+++L ++ A LD+ +GL ++ Sbjct: 60 RQIYTDRLQQISRQFGRPLTPDQARAFGLDRQVLQQTIAEAALDEEARRLGLGQSDDQIR 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G F + F + + G E+ Y+ K+ R + G G+ P Sbjct: 120 QVIMNDPNFKGVGGSFDANRFQAVIRNFGYTEQRYVSEQRKVSLRRQLTGTIGAGLEPPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++D RF E R++++ L+ I PS L +FE +K +RAPEY++I++++ Sbjct: 180 AMIDVLTRFQNEQRAIEFARLDAAQAGTIDAPSPEALAAYFEDHKVQFRAPEYRKIAFVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 E K E+S+++ + +++ K++ +PE R + Q+VFPN EA A + L G F Sbjct: 240 ISPEEIGKWSEVSDEDAKKLFDQRKDRLGTPEKRQIHQIVFPNAAEAQTARERLAGGMSF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 L +E+G S SD+ LG +K + D ++ D+ F+L G+ + I G G I V I Sbjct: 300 EDLGKERGLSASDVDLGLVTKSSL-DPAVGDAAFALP-AGEISQPIQGRLGTAIVKVDKI 357 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P ++ + DI ++ +A KV + ++E+ G S+ + +++ + ++ + Sbjct: 358 EPGVEANYASLVGDIKREIATERARVKVADLRDKMEDERGGGASVIDAAQKLGLTAVTID 417 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ G+ VA IP ++ + F D + D G Y+W + P+RD Sbjct: 418 AVDRSGRAPNGQPVANIPPGLDVVSQAFNTDVGVDNDAISF--KGGYVWYDVLAITPSRD 475 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + A ++ +KA ++V + GK D +GA + T R Sbjct: 476 RNLDEVRDQVEARWRQDQIATKLKAKATEMVQKLEAGGK-LADEAAAVGAKVETATGFKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFIS 592 D+ ++ F + V P+ G +VF+VT+ V K Sbjct: 535 DDSPAGV-PATVVAAAFRTAKDGVGQTPVSGGSEVIVFRVTDIVDPTVDAASDAVKKLKE 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 L + ++ + S + L++ T++ + + Sbjct: 594 SLDRAQTEEQVASYVNKLETDIGTTINQAAFAQVTGANQ 632 >gi|148255838|ref|YP_001240423.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1] gi|146408011|gb|ABQ36517.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1] Length = 636 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 173/638 (27%), Positives = 308/638 (48%), Gaps = 15/638 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K + + VL V F IWG++D +F G ST +VGR ++ + F Sbjct: 1 MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L I +++G + E+AR GLD+ +L ++ A LD+ +GL Sbjct: 60 RQIYTDRLQQIGRQLGRPLTQEQARMFGLDRTVLQQTIAEAALDEDARRLGLGQSDAETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ Y+ ++ R + G G+ P N Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRVSLRRQITGTIAAGLEPPN 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +LD RF E RS+DY+ L+ I PS VL +F+++K ++APEY++IS++L Sbjct: 180 TMLDALSRFQNEQRSIDYLKLDAAQAGPIDAPSPEVLASYFDEHKAQFKAPEYRKISFVL 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 + K ++S+++ + +++ K + +PE R V+Q+ FP +EA A + G+ Sbjct: 240 VTPEDIGKWTDVSDEDARKLFDQRKAQMGTPEKRQVQQMTFPTMEEAQAARARIASGEVS 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +LA+E+ + +D+ LG +K I D ++AD FSL G+ + + G+F + VS Sbjct: 300 FDELAKERNLNPADLDLGLVTKTAILDPAVADMAFSLP-TGEVSQPVKGAFNVALVKVSA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P +++ V DI ++ +A +V ++E+ G S+ E +++ + +I + Sbjct: 359 IQPGQQPAYESVATDIKKEIAADRAKSQVANLRDKMEDERGGGASVAEAAKKLGLNAITV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD +GK G+ V IP ++ + F D + D+ G Y+W ++ P R Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFNSD--VGVDNEPISFRGGYVWYEVLGITPPR 476 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 DR L+EV V W+ + A ++ +KA LV + ++ GK D LG + T + Sbjct: 477 DRSLDEVKDQVAAKWRDDEVAAKLRAKATDLVKKLNEGGK-LADEAAMLGVKVETASAFK 535 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFI 591 R D I F + V E G ++VF+VT+ ++ K Sbjct: 536 R-DATVPGVPAGAIVAAFRTAKDGVGQTEAEGGRQWIVFRVTDITEPKVDLASEDIKKLK 594 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L + + + + + L+ T+++ + + + G Sbjct: 595 DQLQRALADEQGTAYVMKLEKDIGTTINEAAVAQVVGG 632 >gi|146341037|ref|YP_001206085.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] gi|146193843|emb|CAL77860.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] Length = 636 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 173/638 (27%), Positives = 309/638 (48%), Gaps = 15/638 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K + + VL V F IWG++D +F G ST +VGR ++ + F Sbjct: 1 MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L I ++IG + +++AR GLD+ +L ++ A LD+ IGL Sbjct: 60 RQIYTDRLQQIGRQIGRPLTTDQARMFGLDRSVLQQTIAEAALDEQARRIGLGQSDAETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ Y+ + R + G G+ PSN Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRQSLRRQITGTIAAGLEPSN 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LLD RF E RS+DY+ L+ I P+ VL +F+++K ++APEY++IS++L Sbjct: 180 TLLDALSRFQNEQRSIDYVKLDAAQAGTIETPAPEVLATYFDEHKAQFKAPEYRKISFVL 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 E K +S+++ + +++ K +PE R V+Q+ FP +EA A + G+ Sbjct: 240 VTPEEIGKWTTVSDEDARKVFDQRKALMGTPEKRQVQQMTFPTMEEAQAARARIASGEVT 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +LA+E+ + +D+ LG +K I D ++AD+ FSL G+ + + G+F + VS Sbjct: 300 FDELAKERNLNPADLDLGLVTKSAILDPAVADTAFSLP-TGEVSQPVKGAFNVALVKVSA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P +++ V DI ++ +A +V ++E+ G S+ E +++ + ++ + Sbjct: 359 IQPGQEPAYESVAADIKKEIAAERAKSEVATLRDKMEDERGGGASVAEAAKKLGLNAVTV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD +GK G+ V IP ++ + F D + D+ G Y+W ++ P R Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFASD--VGVDNEPISFRGGYVWFEVLGITPPR 476 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 +R L+EV V W+ + A+ + +A +LV + ++ GK D LG + T + Sbjct: 477 ERTLDEVKDQVAAKWRDDEIAKRLRDRATELVKKLNEGGK-LADEAAALGVKVETASAFK 535 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFI 591 R D I+ F + V + G ++VF+VT+ ++ K Sbjct: 536 R-DASLPGVPTGAITATFRTAKDGVGQTEADGGRQWIVFRVTDIVDPKVDLASEDVKKLK 594 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L + + + S + L+ T+++ + + + G Sbjct: 595 DQLQRALADEQGTSYVLKLEKDIGTTINEAAVAQVVGG 632 >gi|222086022|ref|YP_002544554.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Agrobacterium radiobacter K84] gi|221723470|gb|ACM26626.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Agrobacterium radiobacter K84] Length = 630 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 200/631 (31%), Positives = 347/631 (54%), Gaps = 7/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +++RK ++TWVAK V+L F IWG+ + + S+ VV+VG QK+ + F ++ Sbjct: 1 MFDVLRKLAKTWVAKGIFVLLIAAFSIWGIESRMVTGGSSNAVVTVGDQKIDTNEFRLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ISQ++ + E+AR+ G+ ++ + LV+GA+LDQ D+ L R+ I Sbjct: 61 RRQIQAISQQLRMQITPEQARAFGIAQQTVAQLVAGASLDQLASDMNLGLSQDRLAQLIG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + F F S L IN +YI +K+ R+ +V G L+D Sbjct: 121 DDPAFKALNGTFDRQKFESLLRNSNINPDDYIKERSKVAVRSQIVEAVSNGFVAPKTLVD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K+++ E+RS+DY++L N ++ I P++ VL++WF+ K +RAPEY++ SY+ Sbjct: 181 AVKQYHDESRSIDYLLLTNANIDPIKAPADDVLSKWFDGVKSKFRAPEYRKFSYVKLQAE 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D +AE+EK K + +P RT+EQL F N+ A+ A +LK G F QL Sbjct: 241 DIADPASVTDDAARAEFEKRKNSFTTPATRTIEQLTFANKDLANAASDALKTGTTFDQLV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK +D+ LG+F+KE +PD +LA + F++AK+G TPV+ GSFG VI V+N+K Sbjct: 301 TDQGKKPADVLLGTFTKEQVPDQTLAQAAFAVAKEGGTTPVVDGSFGPVILRVTNVKDET 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F +VK+DI Q+ + A+ + + + E+ G S+ E +++ + +I + +D Sbjct: 361 AKNFDDVKEDIRKQIALNAAASDITSIHDKFEDLRGSGVSLQEAAQQLNLKAITVDAIDS 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D G E+ +P ++QLL VF D + + + + Y+W + P RDR L Sbjct: 421 TGLDQAGNEIKDLPARQQLLGEVFKADQGSNA-APLTVGNDGYVWYDVLGLTPDRDRPLA 479 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV DW + +++KAN+L E K GK+ DI LG ++ + + R + Sbjct: 480 EVREKAVVDWTAEQQKIALAAKANELKQEAQK-GKSLADIATPLGIAVESKADVTRT-TD 537 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596 + G G++ FSGP++ + + ++ KVT+ P + +D+ + + Sbjct: 538 DPVLGRAGVAAAFSGPIDTAANAIGADDTTQILLKVTDVNNNPTTDALSNQDQQATQIAN 597 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD ++A L+S+Y+VTV+ NL ++ + Sbjct: 598 AAGDDILDQIVADLQSKYTVTVNQNLAEQAM 628 >gi|115524599|ref|YP_781510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] gi|115518546|gb|ABJ06530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] Length = 633 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 170/637 (26%), Positives = 298/637 (46%), Gaps = 15/637 (2%) Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IRKAS W+ KI L VL + F +WG+ D +F G ST ++G ++ F Sbjct: 1 MLRGIRKASSNWIGKIILSTVMGVLILSFAVWGIGD-IFKGFGRSTAATIGSTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + L I ++ G + ++AR+ G+D+++L V+ A LD+ GL Sbjct: 60 RQLYTERLQQIGRQFGKPLTPDQARAFGIDRQVLQQAVAEAALDEDARRKGLGQSDAETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G KF F L + G E+ YI ++ R + G G+ P Sbjct: 120 RTILSDPNFKGTAGKFDPARFGQVLRQFGYTEQRYIAEQRRVSLRRQIAGTLTAGLIPPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+D R+ E R++DY+ L+ H I PS L +F +K+ +RAPEY++ S++ Sbjct: 180 TLIDALGRYQNEQRTIDYVKLDAAHAGPIEPPSPEALAAYFADHKNQFRAPEYRKASFVA 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +S+++ + YE +EK+ +PE R V Q+VFP +A A + G F Sbjct: 240 LTPDAVAKWTTVSDEDAKKAYEDRREKFATPERRQVSQIVFPTSADAQAARSKIDGGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+G S +DI LG +K I D ++A + F+L + ++G FG +A V I Sbjct: 300 EDIAKERGLSATDIDLGLVAKAGILDPAVAAAAFALPAN-QVSQPVNGRFGVALAKVGAI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P SF+ V D+ + I +A + + + ++E+ G S+ E +++ + ++ + Sbjct: 359 EPGSQQSFESVAADLKRDIAIERARASISDLHNKMEDDRGGGASVVEAAQKLGLAAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ G A IP +L+ +F D + D G Y+W + P+R+ Sbjct: 419 AVDRSGRTSDGTA-APIPQGLELVPALFSSDVGVDNDALAF--GGGYVWFDVLGITPSRE 475 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + + S+A ++V + G + D G + T R Sbjct: 476 RSLDEVKPQVEARWRDEQIGNRLRSQATEMV-QQVNAGTSLADAAAKAGLKVETAASFKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592 D + F + V P G ++V++VT+ V P+ E + Sbjct: 535 -DATVAGLPPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRD 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L + +N + L +A L++ T++++ + + Sbjct: 594 NLERRLNDEQLAQYVAKLETDLGTTINESAVAQATGA 630 Score = 40.7 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 5/150 (3%) Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-- 322 EQ+ + +A E Q + G A + G + + SF ++ Sbjct: 484 QVEARWRDEQIGNRLRSQATEMVQQVNAGTSLADAAAKAGLKVETAA--SFKRDATVAGL 541 Query: 323 -VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + ++ F AK G +++ V+++ K + + + Sbjct: 542 PPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRDNLERRLND 601 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIV 411 E++ + +LE L + +++ Sbjct: 602 EQLAQYVAKLETDLGTTINESAVAQATGAA 631 >gi|75676027|ref|YP_318448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter winogradskyi Nb-255] gi|74420897|gb|ABA05096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter winogradskyi Nb-255] Length = 636 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 161/637 (25%), Positives = 308/637 (48%), Gaps = 13/637 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W+ K I + +L V F IWG++D +F G S + +VG ++ F Sbjct: 1 MLRGIRNASSNWLGKTLMTIVMGLLIVAFGIWGIAD-IFHGFGQSALATVGGTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + L I ++ G + ++ R++GLD++IL +++ A LD+ + GL+ + Sbjct: 60 RQIYNDRLQQIGRQFGRPLPPDQVRALGLDRQILQQVIAEAALDEDAQRKGLKVSDEEIG 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +I P F G +N F F + + G E+ Y+ M R +VG G+ PS Sbjct: 120 RQIKSDPNFKGANNAFDAARFAGLIRQLGYTEQRYVAEQRNMALRRQIVGTMTAGVEPSK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LL+ RF E R++DY+ L I P+ L+ +F+ +K +RAPEY+++++++ Sbjct: 180 TLLEALNRFQNEQRTIDYVKLGAAQAGTIDPPTADQLSGYFDAHKVQFRAPEYRKVAFVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 E K +S+D+ + YE+ K+K +PE R + Q++FP+ +A A + + G F Sbjct: 240 LTPEEVAKWTAVSDDDARKIYEERKDKLSTPERRQLRQIMFPSVTDAQAAREKIAGGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A E+G + SDI LG+ SK I D ++A++ FS+ + + G FG + V I Sbjct: 300 DDIARERGLATSDIDLGTISKAEIIDPAIANAAFSI-NSDEVSQPTQGRFGVALIKVGRI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P +++ V + + + + +A ++ + ++E+ G S+ E +++ + ++ + Sbjct: 359 EPGNQPTYESVAEKLKRDVALDRARAEINNLHNKMEDERGGGASVVEAAKKVGLSAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 D +G+ GK V+ IP L+ + F D + D T+ L + ++W + P+RD Sbjct: 419 ATDRSGRAPDGKPVSGIPQGVDLIAQAFASDVGVDND-TLQLGNNGFIWFDVIGVTPSRD 477 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + + + +KA + + + GK D +LG + + + I R Sbjct: 478 RTLDEVKDKVEARWREDQISSRLMTKATDTIRKLEQGGK-LADEAASLGLKVESASAIKR 536 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFIS 592 D ++ V + P + +F+VT+ KV E K Sbjct: 537 -DATTTALPAAVVAAVCRAAKDAAGQAPGAGNDEWFIFRVTDVKVPTLDLASDETKKLRE 595 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + + ++ + + I L+++ ++ + + Sbjct: 596 GVQRGLSDEYIGQYIVKLEAEIGTKINQAAVAQITGA 632 >gi|220925415|ref|YP_002500717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] gi|219950022|gb|ACL60414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] Length = 632 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 322/637 (50%), Gaps = 13/637 (2%) Query: 1 MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ R AS++W+ KI +L I+G+ D +F SGSSTV +VG K+ + Sbjct: 1 MLQGFRAASQSWLGKIVITVVFGLLIAGLAIFGIGD-IFRGSGSSTVATVGSTKISAEAV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++++ ++ +++++ + ++AR++GLD+++L LV+ ATLDQ D+GL V Sbjct: 60 RSAYQNQIQRLARQVRRPITPDQARALGLDREVLSALVTEATLDQKTRDLGLRVSDDTVI 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F +F L + G++E ++ + +R + + Sbjct: 120 RLIKEEPAFKGANGAFDIALFNDTLRQAGLSEAAFVQEQRAVAARLQLAEAITADLPVPL 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R+ +I+L I P++ + ++++++ +RAPEY+ ++ ++ Sbjct: 180 AVREAIHRYTAERRAAAFILLPESAAGEIPAPTDEEVKTYYDEHRSAFRAPEYRSVNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K +++ E +A Y+ +K +Y +PE RT++Q+VFPN+ +A A ++ G+ Sbjct: 240 LDPATLAKPDAVTDAEARARYDADKSRYGTPERRTIQQIVFPNEADAAAALARIRSGEAP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A E+G + LG+FS+ + D ++AD+ F L ++G + + G FG V+ V+ Sbjct: 300 FESIAGERGLDPKSLDLGTFSRSELFDPAVADAAFGL-QQGVVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P ++EV I ++ +A + +++ + +E+ A + EI+R ++ I + Sbjct: 359 IEPGSVKPYEEVAGQIRTEIARERAGDNLEKVHDAIEDQRAGAKPLAEIARERELPLITV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD G+D +GK V +P K+ +L +F + + + G Y+W I + PA Sbjct: 419 ASVDAQGRDPQGKPVEGLPDKDAVLPALFRAEMG-ADSEALRTRSGGYVWYDIVKVDPAH 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 DR L EV DV WK + +S+KA + K G+ + +LG T + + Sbjct: 478 DRPLPEVRDDVVAQWKAEEVERRLSAKAREAAERLDK-GEAIEAVASSLGLEAKTASDLA 536 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISY 593 R ++ + I ++F+ PV+ + + V FKVT++ V P+ + Sbjct: 537 RGRAKDGLTP-ESIGRIFATPVDKTGSASAGDKV-RVAFKVTSATVPPLAAGSQGNVEQQ 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 + D+L IA + + V+++++ +R + GE Sbjct: 595 FRSALADDILAQYIADARKEAGVSINESAFRRAIGGE 631 >gi|260459244|ref|ZP_05807499.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum WSM2075] gi|259034798|gb|EEW36054.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum WSM2075] Length = 630 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 314/631 (49%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 ML +R A+ TWVAK L +L V F WG+S L +G +V++ G KV + + + Sbjct: 1 MLGTLRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVITAGGTKVSINEYRLA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++L ++SQ+ G + E+A+ +G+D +IL LVSGA LD+ +GL R+ Sbjct: 61 YDRQLAVMSQQFGQRLTHEQAKGLGIDNQILAQLVSGAVLDEQARKLGLGLSKDRLAELT 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F G +F F L G+ ++Y+ + ++ R +V G++ + Sbjct: 121 REDPAFKGPSGQFDRRTFEYMLHEVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E+R+VDY+ L V + PS++VL +FE K Y APEY++ SY+ + Sbjct: 181 KAVALYRGEDRTVDYLTLPKALVEPVEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L Sbjct: 241 VDIMDTTAVTDQQVSDDYNKNKARYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +GK+ +D LG+ +K+ I D ++AD+ F+L + +PV+ G+FG V+ V+ IKP Sbjct: 301 VAAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSPVVQGAFGPVLLRVTEIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 EV I + + +AS + + + E+ A G+S+ + + + K+ I + +D Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDITIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G G V +P +L+ VF + P +++ + D +++ ++ PARDR L Sbjct: 420 RSGLRPDGSIVKDLPESPELIKAVFDAE-PNTENDGLTTADNGFIFYEVGSVTPARDRTL 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V DW +T + +++KA++L + K G I L T + R + Sbjct: 479 DEVRKKVVADWTAAETTKRLAAKADEL-EKRLKAGATLDVIAGELKLEKQTKRGLRR-EA 536 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595 ++ FG +G + +F P G ++FKV + T Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQKSFT 596 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 M+ DLLD ++A L++QY V V + + Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRVDQAAVAQA 627 >gi|307310586|ref|ZP_07590233.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti BL225C] gi|307320968|ref|ZP_07600375.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti AK83] gi|306893342|gb|EFN24121.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti AK83] gi|306899696|gb|EFN30322.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti BL225C] Length = 630 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 199/631 (31%), Positives = 343/631 (54%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++ Sbjct: 1 MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ++S+++G ++ ++A++ G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L+D Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R++DY++L+N ++ A+ P + VL WFE K NYRAPEY++ISYI + Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++++EL+A+YEK KE Y +P RTVEQL FP+++ AD A L G F L Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G+FG VI V+NI+P Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF EVK+++ ++ + A E++ + ++E+ A G S+ EI+ + K+ + + VD Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G EV +P LL VF D V + W ++E IPARDR L+ Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKADVGTDT-LAVNIGRDGSAWFDVEEIIPARDRTLD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +V DW + + + + E ++G DI LG + + + R N Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRATN- 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 + + F+GP V P G V+ +VT + + I + + Sbjct: 537 DATLSPAAVIAAFAGPNGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSSQIEAIAR 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD +++ L++ Y V+++ +L + L Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQSLAETAL 627 >gi|15965412|ref|NP_385765.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium meliloti 1021] gi|15074593|emb|CAC46238.1| Putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium meliloti 1021] Length = 630 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 199/631 (31%), Positives = 343/631 (54%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++ Sbjct: 1 MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ++S+++G ++ ++A++ G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L+D Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R++DY++L+N ++ A+ P + VL WFE K NYRAPEY++ISYI + Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++++EL+A+YEK KE Y +P RTVEQL FP+++ AD A L G F L Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G+FG VI V+NI+P Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF EVK+++ ++ + A E++ + ++E+ A G S+ EI+ + K+ + + VD Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G EV +P LL VF D V + W ++E IPARDR L+ Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKADVGTDT-LAVNIGRDGSAWFDVEEIIPARDRTLD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +V DW + + + + E ++G DI LG + + + R N Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERIEKGAKLADIASELGLVVESKTGLTRATN- 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 + + F+GP V P G V+ +VT + + I + + Sbjct: 537 DATLSPAAVIAAFAGPNGHVANAPGIGGDGQVLMQVTAVEDQAPADALDNDSSQIEAIAR 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD +++ L++ Y V+++ +L + L Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQSLAETAL 627 >gi|222148891|ref|YP_002549848.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4] gi|221735877|gb|ACM36840.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4] Length = 629 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 204/631 (32%), Positives = 342/631 (54%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML I+RKA+ TWVAK L++L F IWG+S ++ S S V+ VG Q V + F ++ Sbjct: 1 MLVILRKAAGTWVAKGLLLLLVASFAIWGISSSIMS-DTSDKVIKVGSQSVNSNEFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S++ G + SE+ARS+G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 QRQISDLSRRFGTQLTSEQARSLGIESQVYQQLVAGAALDQLASDMNLGLSQDRLAQLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F +F SRL GI E++YI +K+ R+ +V G P +L+D Sbjct: 120 DDPAFKNTNGQFDRQLFTSRLRNSGIREQDYITERSKVAVRSQIVDATAEGFVPPKVLID 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+RS+DY++L ++ I P VL WF K YRAPEY+ SY+ + Sbjct: 180 ALKLYRQESRSIDYLLLTTANIDPIKAPDETVLKTWFNTMKSRYRAPEYRSFSYVKLEPA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++++++ EY+ N +K+ RT+EQL FP ++ A+ A QSLK GK F QL Sbjct: 240 DIADPKAVTDEQVKQEYDANLKKFEVAGTRTLEQLTFPTKELAETAAQSLKNGKTFDQLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ +D+ LG F++ IPD LAD+ F++AK D TPV+ G+FG VI VSNIKPS Sbjct: 300 ADQGKTATDVLLGDFTRADIPDQKLADAAFAVAKDSDTTPVVEGAFGPVILRVSNIKPSH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T + EVK I + A++++ + + R E+ A G+S++E + + + +I + +D Sbjct: 360 TKTLDEVKDQIRADLAANAAAQQINDVHDRFEDMRASGSSLEEAATKAGLKAIKIDGIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G+D GK+ +P K LL VF + ++ + + Y+W + +R+R L+ Sbjct: 420 QGQDKTGKQAENLPEKANLLKSVFETEAG-AEPLPLNIGRNGYLWFDVTSIDASRERTLD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV DW T + + + +K QL + G D+ L + T + R D E Sbjct: 479 EVKDKAVSDWTTEQQKQALGAKVEQLKAKAD-TGVALADLATELAIGVETKAGLRR-DTE 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596 + G + F GP + + ++ ++ KVT+ P V +++ I+ L + Sbjct: 537 DPVLGPAAVQAAFRGPSGTIGSAVGADPMTQILLKVTDVNTQPTGDVVDQQESQITALAK 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD ++ L+++Y VT++ L Q+ + Sbjct: 597 SAGDDILDQMVNQLQTKYGVTINQALAQQAI 627 >gi|150396621|ref|YP_001327088.1| putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae WSM419] gi|150028136|gb|ABR60253.1| putative peptidyl-prolyl CIS-trans isomerase protein [Sinorhizobium medicae WSM419] Length = 630 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 192/631 (30%), Positives = 337/631 (53%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++ Sbjct: 1 MLDSLRNAAQTRVVKALLALLILSFMVWG-GQTLMVPNTPNAVVTVGDIKVSPSDFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ ++S+++G + ++A++ G++ ++ LV+GA LDQ D+ L R+ I Sbjct: 60 ERQVALLSRQLGTPLTRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L++ Sbjct: 120 EDPAFHGVNGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R+VDY++L+N ++ A+ P + VL WFE K NYRAPEY++ SYI + Sbjct: 180 AVDKYRHETRTVDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKFSYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ +EL+A+Y+K KE + +P RTVEQL FP+++ AD A L G F L Sbjct: 240 DLAASDSVTEEELRADYDKRKESFRTPATRTVEQLAFPSREAADAAAAKLSAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G FG VI V+NI+ Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVDGPFGPVILRVTNIRSEA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 S+ EVK+++ ++ + A +++ + ++E+ A G ++ EI+ + K+ + + VD Sbjct: 360 VRSYDEVKEELRKEIALDAARDQLVGLHDKIEDERAGGVTVKEIAEQLKLKLVTVVAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +GKD G +V +P LL VF D DGS +W ++E IP RDR L+ Sbjct: 420 SGKDQNGDDVKDLPEPRALLQEVFKADVGTDTLSVNIGRDGS-VWFDVEEIIPGRDRTLD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +V DW + + + + E ++G DI LG + T + R N Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERVEKGAKLADIASELGLVVETKTGLTRSTN- 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 + + F G V P G V+ +VT + + + I + + Sbjct: 537 DATLSPAAVIAAFGGANGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSRQIEAIAR 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD +++ L++ Y V+++ L + L Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQTLAETAL 627 >gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] Length = 633 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 163/637 (25%), Positives = 296/637 (46%), Gaps = 15/637 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W K I + VL + F +WG++D +F G ST+ +G ++ F Sbjct: 1 MLRGIRNASSNWFGKTVMIIVMGVLIISFAVWGIAD-IFRGFGRSTLAQIGGTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I ++ G + ++AR+ G+D+++L +++ A LD+ + L Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLQLGQSDDETM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F F + + G E+ YI K+ R + G G+ PSN Sbjct: 120 RSILNDPSFKGTNGAFDPGRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSN 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L A +F E R++DY+ L + V I PS L ++E +K +RAPEY++++++ Sbjct: 180 TMLLVASQFQNEQRAIDYLKLTDAQVGTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVA 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K ++S+ + + +++ K+K +PE R V Q+VFPN +EA A + +G F Sbjct: 240 LTPESIAKWTDVSDADARKLFDERKDKLSTPEKRQVLQIVFPNAEEAQAARARITEGASF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + ++G +D+ LG K + D ++A F+L + + I G+FG + V+ I Sbjct: 300 EDITNQRGLKPADVELGLVGKAEMLDPAVAKVAFALPLN-EVSQPIPGAFGTALVKVAKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P S++ V I + + +A +V + ++E+ A G ++ E S+ + ++ + Sbjct: 359 EPGVQPSYESVAPTIKRDVALERARAQVMAQHDKMEDARAGGANVIEASKMLGLNAVTIE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 VD +G+ G+ V IP +L F D + + Y+W + P+R+ Sbjct: 419 AVDRSGRGPDGQPVKEIPQGLELATSAFNSDVGVDTEQINY--QNGYVWFDVLGVTPSRE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L EV V+ W+T + + + A +LV + GK ++ G + T + + R Sbjct: 477 RSLAEVKDQVEARWRTEQVTSRLRTMAAELVQKLGANGK-LAEVA-PQGVKVETASGLKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFIS 592 + VF + V P NG + V++VT+ V PV + K Sbjct: 535 EGATPGV-PATVVEAVFRTAKDGVGQSPGGNGNEWFVYRVTDVTVPPVDLASDDAKKLKD 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L Q MN + + IA+L+ ++ + + Sbjct: 594 ALLQRMNDEQVGEYIAWLERDIGTKINQQAVAQATGA 630 >gi|15888991|ref|NP_354672.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens str. C58] gi|15156777|gb|AAK87457.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens str. C58] Length = 630 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 193/634 (30%), Positives = 349/634 (55%), Gaps = 10/634 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R ASRT AK+ L++L V F +WG+S +L + S V++VG Q V F ++ Sbjct: 1 MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVTA-NSHAVMTVGDQTVSPQEFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S++ G + +E+A++ G+D+++ L +GA LD+ + L R+ IA Sbjct: 60 QRQVSDLSRQFGTRLTTEQAKAFGIDRQVFSQLAAGAALDELASKMNLGLSENRLANLIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++F RL G E +YI +K+ R+ +V G +L+D Sbjct: 120 EDPAFKSVNGQFDRNLFSERLRNSGFREDDYIKERSKVAVRSQIVEAVSDGFAAPQVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K++ E R+VDY++L+N +P + P + VLT WFE K YRAPE+++ +Y+ + Sbjct: 180 ALKQYRNEQRAVDYVILSNAVIPPVKAPGDDVLTPWFETNKSKYRAPEFRKFTYVKLEPS 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299 + + +++ ++ Y +K+ + + RTVEQL FP+++ A A + ++ G + Q+ Sbjct: 240 DIAEPASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPDKEMAAAAAEQIRLGNTTYDQV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G +PV+ GSFG ++ V+ IKP Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAIQKDGGVSPVVDGSFGPILLRVTGIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T + E K+DI + A+E++ + R E+ A G+S+ + +++ + + + +D Sbjct: 360 TTRTLDEAKEDIRKDLATAAAAEEITNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 AG + KG + +P QL VF K +P + + L Y+W +++ IPARDR L Sbjct: 420 AAGLNEKGDAIEGLP-SPQLAQDVF-KTEPGTDALPINLGREGYIWFDVEQIIPARDRTL 477 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV DV DW + +++KA++L K G+ + L ++ + + R + Sbjct: 478 AEVRDDVVADWTAEQQRTALAAKADELKARVEK-GETLEAVAGELSLAVEQKSGLRRT-S 535 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT----NSKVGPVQEKDKFISYLT 595 E+ FG I+ VFSG +V +G S ++FKVT N+ + D+ + + Sbjct: 536 EDAIFGRQTIAAVFSGAEGVVGTAADADGSSRILFKVTSVDANAPADALANDDQQFTAIA 595 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + D+LD ++ L++ Y VT++ L + + G Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629 >gi|13470813|ref|NP_102382.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti MAFF303099] gi|14021556|dbj|BAB48168.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti MAFF303099] Length = 630 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 179/631 (28%), Positives = 316/631 (50%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 ML I+R A+ TWVAK L +L V F WG+S L +G +V+ G KV + + + Sbjct: 1 MLGILRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVIIAGGTKVSINEYRLA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++L ++SQ+ G + E+A+++G+D ++L LVSGA LD+ +GL R+ Sbjct: 61 YDRQLAVMSQQFGQRLTHEQAKALGIDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F G +F F L + G+ ++Y+ + ++ R +V G++ + Sbjct: 121 REDPAFKGPGGEFDRRTFEYMLRQVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDAFF 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E+R+VDY++L + V I PS++VL +FE K Y APEY++ SY+ + Sbjct: 181 KAVALYRGEDRTVDYLLLPKKLVEPIEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + ++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L Sbjct: 241 VDIMDPTAVTEQQVSDDYNKNKTRYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFEKL 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +GK+ +D LG+ +K+ I D ++AD+ F+L + + V+ G+FG V+ V+ IKP Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 EV I + + +AS + + + E+ A G+S+ + + + K+ + + +D Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G G V +P L+ VF + P +++ + D +++ ++ PARDR L Sbjct: 420 RSGLRPDGSIVKDLPESPALIKAVFDAE-PKTENEALTTADNGFIFYEVASITPARDRTL 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V DW +T + +++KA++L + K G I +L T + R + Sbjct: 479 DEVRQKVVADWTAAETTKRLAAKASEL-DKRLKAGATLDVIAGDLKLEKQTKRGLKR-EA 536 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595 ++ FG +G + +F P G ++FKV + T Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQKSFT 596 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 M+ DLLD ++A L++QY V + + + Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRIDQAAVAQA 627 >gi|163760078|ref|ZP_02167161.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43] gi|162282477|gb|EDQ32765.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43] Length = 651 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 183/631 (29%), Positives = 349/631 (55%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++WVA+ LV+L F +WG+S ++ + GS VV+VG +V + F ++ Sbjct: 23 MLDTLRKGAKSWVAQFLLVLLVASFAVWGISGSILNAGGS-AVVTVGDTEVSPNEFRLAY 81 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q++G + E+AR+ G++ ++ L++GA LD+ ++ L R+ IA Sbjct: 82 DRQMAAVGQQLGTRLTQEQARAFGIENQVYSQLIAGALLDEQAREMNLGLSDSRLAALIA 141 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + FH +++F +F L G++E++YI +++ RT +V G + ++ Sbjct: 142 QDAAFHDFNSRFDRSIFRRVLNSVGMSEEDYIRSRSQVAVRTQIVEAVAEGFDAPDAMIS 201 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R V+Y++L ++ + PS+ L+ +FE K Y APEY++ +Y+ + Sbjct: 202 ALAQYEAETRDVNYLLLTKANIDPVPAPSDDELSAFFESNKTRYAAPEYRKFTYVKLESE 261 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + IS++ +A+YE K +Y + E RT++QLVF +++ A+ A L GK F L Sbjct: 262 DIADPAAISDEMARADYEARKNRYTTAETRTIDQLVFADREAAEAAEAELASGKSFDTLI 321 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QG++ +D+ LGSF++E +PD SLAD+ F++ G +PV+ G FG VI V+ I P Sbjct: 322 TDQGRTAADVRLGSFTEETVPDQSLADAAFAITDAGGVSPVVDGQFGPVILRVAEITPES 381 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + SF+EV+ +I +++ + +A++ + + + E+ A G ++ E + ++K+ + + D Sbjct: 382 SRSFEEVQTEIRDELALAEAAQVLLDVHDAYEDARAGGMTLMEAATQQKLTPVTIEAADR 441 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +G+ G ++ +P +QLL VF + + ++L ++W ++++ PARDR L+ Sbjct: 442 SGQTPDGTVLSELPQSQQLLRDVFETEPGVEAP-PISLGVEGFVWFEVEDVTPARDRTLD 500 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DW + + E + +KA L E + G + I L ++ T +NR D Sbjct: 501 EVREQVVADWSSEQELEALGAKATAL-QERLERGADLSAIAAELSIAVETKFSLNRTDT- 558 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD----KFISYLTQ 596 + FG ++ FSGP +V +G + ++ +VT+ D + ++Q Sbjct: 559 DPVFGEAAVAAAFSGPQGLVTVANDTSGDNKILIQVTSVNDASGTTADSVSQEQRDQISQ 618 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+LD V+A L+++Y V+V+ L +R L Sbjct: 619 QIADDILDQVVAQLQAEYGVSVNRELAERAL 649 >gi|254564031|ref|YP_003071126.1| peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens DM4] gi|254271309|emb|CAX27321.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens DM4] Length = 634 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 160/640 (25%), Positives = 301/640 (47%), Gaps = 17/640 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F S+ V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V M Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R + L I P++ L ++E K ++RAPEY+ ++ ++ Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K E+S+DE + YE N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 240 LDPAALAKPDEVSDDEARKVYEANPGRFGKAERRTIQQISFPDEATAAEARAKIESGETP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V+ Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I+P F EVK +I ++ + + + + +E+ A + EI++ + + + Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLVS 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 +P VD G D G+ VA IP KE L F D + + G +W + + P+ Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++ L EV +V K W + + + +K+ +L K G+ + + G L T +I Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ + + ++F+ PV P G VFKVT + + + Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 ++ L + D+L IA ++ V V+ ++R GE Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|316933952|ref|YP_004108934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris DX-1] gi|315601666|gb|ADU44201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris DX-1] Length = 633 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 156/629 (24%), Positives = 293/629 (46%), Gaps = 15/629 (2%) Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR AS W K + +L V F IWG++D +F G +T+ +G ++ F Sbjct: 1 MLRGIRNASSNWFGKTIMIAVMGLLIVSFGIWGIAD-VFRGFGRATLAKIGGTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I +++G + ++AR++G+D+++L ++ A LD+ +GL Sbjct: 60 RQTYNDRLQQIGRQLGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + +F F + + G E+ Y+ ++ R + G G+ P Sbjct: 120 KSILEDPNFKGANGQFDAGRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGTITAGLEPPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LL +F E R++DY+ L + I PS A L +++ +K +RAPEY++IS+++ Sbjct: 180 TLLQALSQFQNEERAIDYLKLTDAQAGTIEAPSPADLAAFYDSHKAQFRAPEYRKISFLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K E+S+ + + +++ K++ +PE R + Q+VFPN +EA A + G F Sbjct: 240 VTPESIGKWTEVSDADARKLFDQRKDRLSTPEKRQILQIVFPNAEEAQAARAKIASGTSF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+G +D+ LG S+ + D +A + F+L + + + G FG V+ V+ I Sbjct: 300 ADLAQERGVKSADLDLGLVSQSEMLDPKVAAAAFALPLN-EVSQPVQGQFGTVLLEVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P + V ++ ++ +A ++V+E + ++E+ G+S+ E + + + ++ + Sbjct: 359 EPGKQPDYASVAANLKRELAQERARKQVQELHDKIEDARGGGSSVSEAASQLGLAAVTVE 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D +G+ G V IP +L F + + D Y+W I P+R+ Sbjct: 419 AIDRSGRGPDGAPVTTIPQGLELATAAFNSEPGVDNDAISY--QNGYVWYDIVGVTPSRE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + E + A +LV + GK D+ G ++ + I R Sbjct: 477 RALDEVKDKVEAGWRAEQITERLRKLAVELVQKLDGGGK-LADVA-PAGVAVQSATGIKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592 + G + VF + +G + VF+VT V + + Sbjct: 535 EGADAGLPG-TVVDAVFRTAKDAAGQVQGSSGTEWYVFRVTGDTVTTADVNAPQMQQLKD 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 L Q + + + IA+L+ V+ Sbjct: 594 NLVQRLRDEEVGQYIAWLEKDIGTKVNQE 622 >gi|325293071|ref|YP_004278935.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3] gi|325060924|gb|ADY64615.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3] Length = 630 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 197/634 (31%), Positives = 350/634 (55%), Gaps = 10/634 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R ASRT AK+ L++L V F +WG+S +L S S V++VG Q V F ++ Sbjct: 1 MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLV-TSNSHAVMTVGDQTVSPQEFRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S++ G + +E+A++ G+D+++ L +GA+LD+ + L R+ IA Sbjct: 60 QRQVSDLSRQFGARLTTEQAKAFGIDRQVFSQLAAGASLDELASKMNLGLSEDRLANLIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F +F RL G+ E +YI +K+ R+ +V G + +L+D Sbjct: 120 EDPAFKSVNGQFDRTLFTERLRNSGLREDDYIKERSKVAVRSQIVEAVSDGFKAPQVLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K++ E RSVDY++L+N + + P + VL WFE K YRAPE+++ +Y+ + Sbjct: 180 ALKQYRNEQRSVDYVILSNAVIAPVKAPGDDVLAPWFETNKAKYRAPEFRKFTYVKLEPS 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299 + + +++ ++ Y +K+ + + RTVEQL FP ++ A+ A + ++ G + Q+ Sbjct: 240 DIADQASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPEKEMAEAAAEQIRLGNTTYDQV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 ++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G +PV+ GSFG VI ++ IKP Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAVQKDGGVSPVVAGSFGPVILRITGIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T + +E K+DI + A+E+V + R E+ A G+S+ + +++ + + + +D Sbjct: 360 TTRTLEEAKEDIRKDLATAAAAEEVTNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 AG D KG + +P QL VF K +P ++ + L Y+W + + IPARDR L Sbjct: 420 AAGLDEKGDAIQDLP-SPQLAQEVF-KTEPGTEALPINLGREGYIWFDVDQIIPARDRTL 477 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV DV DW + +++KA++L K G+ + LG ++ + + R + Sbjct: 478 AEVRDDVVADWTAEQQRTALATKADELKARVEK-GETLAAVAGELGLAVEQKSGLRRT-S 535 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV----TNSKVGPVQEKDKFISYLT 595 E+ FG I+ VFSG M +G S ++FKV TN+ + D+ + + Sbjct: 536 EDAIFGRQTITAVFSGAEGMTGTAADADGSSRILFKVTAVDTNAPADALANDDQQFAAIA 595 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + D+LD ++ L++ Y VT++ L + + G Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629 >gi|154253607|ref|YP_001414431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum lavamentivorans DS-1] gi|154157557|gb|ABS64774.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum lavamentivorans DS-1] Length = 631 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 164/629 (26%), Positives = 314/629 (49%), Gaps = 10/629 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ + WVAK+ + +L + F +WG++D +F+ G TV VG QK+ +++ Sbjct: 1 MLDSLRRNASGWVAKVLIGLLALSFAVWGIAD-IFTGFGGDTVAEVGDQKIDAATYQVEL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ SQ++G ++ ++AR G+D+ L L+S A LD D+GL V +I Sbjct: 60 RNEMNQFSQRLGQPLSLDQARQFGIDRAALSRLISLAALDGAASDLGLAVGDEAVGIDIT 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P G +F D+F L + GI+E+ +I+ + +SR V+ + G+ L++ Sbjct: 120 TDPNLQGPFGRFDRDLFRQSLQQNGISEERFIEQRRRAMSRKQVIEVIQVGVAAPEALIE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 RF E R Y++L V IADP + +++E + PE + S ++ + Sbjct: 180 MVSRFQEETRVAGYVILPQSLVGEIADPDEETVQKFYEAGASAFTLPETRDFSIMVLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + + + +S ++LQA YE+ + +Y PE R V Q+ F +++EA+EA L+ G+ + Sbjct: 240 DVTRTMAVSEEDLQAAYEQRRGEYDVPERRDVHQITFASEEEANEALTKLRGGENVETVV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + G ++ D+ LG S++ + LAD+ FSL G ++ + G G+ I HV+ I+P Sbjct: 300 KGLGLTMKDVDLGKVSRDDMLSPELADAAFSLEGTG-YSEPVRGPLGWSILHVTGIEPGK 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++++VK+++ + + A +++ + +E+ A G + ++++R + + + Sbjct: 359 PSTYEDVKEELRAAIELELARDQIYDIQNTIEDARAGGEPLADVAKRYNLTVRSIDGITA 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 GK G V +P LL V+ ++ + + Y WV+I PA + L+ Sbjct: 419 DGKTRNGDTV-ELPELPDLLNTVY-ENQQGDQIPPLDSGKDGYYWVEIDAVNPAELQPLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK K A+++ + A LV E G++F I G S+L+T + R + Sbjct: 477 EVRDRVVSIWKQQKRADDLEALATSLV-ERGNAGESFEKIAAEYGRSVLSTPPLQRY-AQ 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLTQ 596 N F ++++F+ P P+ G S +V +V + + + + + L Sbjct: 535 NDTFSRTAVTRLFAAPEGGFTFGPVGLGDSLIVMQVKDVRSPQLDANSDKYKETRTTLVD 594 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + D+L + + + + V V++ L Q+ Sbjct: 595 AIQADMLQTFVVGYQQELGVEVNNTLFQQ 623 >gi|240141517|ref|YP_002965997.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens AM1] gi|240011494|gb|ACS42720.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens AM1] Length = 634 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 159/640 (24%), Positives = 301/640 (47%), Gaps = 17/640 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F S+ V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V M Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMLVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R + L I P++ L ++E K ++RAPEY+ ++ ++ Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGESP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V+ Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I+P F EVK +I ++ + + + + +E+ A + EI++ + + + Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 +P VD G D G+ VA IP KE L F D + + G +W + + P+ Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKESTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++ L EV +V K W + + + +K+ +L K G+ + + G L T +I Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ + + ++F+ PV P G VFKVT + + + Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 ++ L + D+L IA ++ V V+ ++R GE Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|218533006|ref|YP_002423822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] gi|218525309|gb|ACK85894.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] Length = 634 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 159/640 (24%), Positives = 301/640 (47%), Gaps = 17/640 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F S+ V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V M Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R + L I P++ L ++E K ++RAPEY+ ++ ++ Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGETP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V+ Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I+P F EVK +I ++ + + + + +E+ A + EI++ + + + Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLVS 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 +P VD G D G+ VA IP KE L F D + + G +W + + P+ Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++ L EV +V K W + + + +K+ +L K G+ + + G L T +I Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQETGVPLKTITEI 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ + + ++F+ PV P G VFKVT + + + Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 ++ L + D+L IA ++ V V+ ++R GE Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|170743494|ref|YP_001772149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp. 4-46] gi|168197768|gb|ACA19715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp. 4-46] Length = 632 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 157/637 (24%), Positives = 309/637 (48%), Gaps = 13/637 (2%) Query: 1 MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ R AS +W+ KI +L I+G+ D +F G++ V +VG K+ + Sbjct: 1 MLQGFRAASESWLGKIVITVVFGLLIAGLAIFGIGD-IFRGGGTAAVATVGSTKISAEAV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++++ ++ ++++ + ++AR++GLD+++L LV+ ATLDQ ++GL V Sbjct: 60 RSAYQNQIQRLARQARRPITPDQARALGLDREVLSALVTEATLDQKTRELGLRVGDDAVI 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + F VF L + G++E ++ + +R + + Sbjct: 120 RLIKEEPAFKGANGAFDIGVFNDTLRQAGLSEAAFVQEQRAVAARLQLAESLTADLTVPL 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + D R+ E RS +I+L I P+ ++E++K +RAPE + ++ ++ Sbjct: 180 AVRDAIHRYTTERRSAAFILLPESAAGEIPAPTEEEARTYYEEHKGGFRAPEIRGVTILV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K ++ +E +A Y+ ++ +Y +PE RT++Q+VFPN+ +A A + ++ G+ Sbjct: 240 LDPTTLAKPDAVTAEEARARYDADRGRYGTPEKRTIQQIVFPNEADAAAALKRIRDGEAP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A E+G + LG+F++ + D ++AD+ F+L + G + + G FG V+ V+ Sbjct: 300 FESIAGERGLDPKSLDLGTFTRAELFDPAVADAAFALPQ-GTVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P F+EV I ++ +A + +++ + +E+ A + EI+R + + + Sbjct: 359 IEPGSIKPFEEVADQIRTEIARERARDGLEKVHDAIEDQRAGAKPLTEIARERDLPLVTV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 P D G+D KG+ V +P K+ +L +F + + + G Y+W + PA Sbjct: 419 PATDAQGRDPKGQPVEGLPDKDAVLPAIFRSEMG-ADSEALRTRAGGYLWYDVTRIDPAH 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 DR L+EV V WK + + +++KA + K G+ + G + + Sbjct: 478 DRPLDEVRDQVAAQWKADEVEKRLAAKAREAAERLDK-GETIEAVAAAYGVEARHASDLA 536 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISY 593 R ++ + + ++F+ V + + FKVT++ V P+ + Sbjct: 537 RGRAKDGLTP-ESVGRIFATAVGKTGSASAGDKV-RAAFKVTSATVPPLPSGPQGGVEQQ 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 Q + D+L IA + Q V+V++ +R + GE Sbjct: 595 YRQALADDVLAEYIADAQRQAGVSVNEAAFRRAIGGE 631 >gi|163854063|ref|YP_001642106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] gi|163665668|gb|ABY33035.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] Length = 634 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 160/640 (25%), Positives = 302/640 (47%), Gaps = 17/640 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F S+ V +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLSVIF-TFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V M Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R + L I P++ LT ++E K ++RAPEY+ ++ ++ Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALTTYYENNKASFRAPEYRSLNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+ Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGETP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A ++G + LG+ +K + D ++ ++ F+L ++G + + G FG V+ V+ Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I+P F EVK +I ++ + + + + +E+ A + EI++ + + + Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 +P VD G D G+ VA IP KE L F D + + G +W + + P+ Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++ L EV +V K W + + + +K+ +L K G+ + + G L T +I Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ + + ++F+ PV P G VFKVT + + + Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPA--GEGRAVFKVTAATMPAFVPGTPSDGQL 593 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 ++ L + D+L IA ++ V V+ ++R GE Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633 >gi|192291606|ref|YP_001992211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris TIE-1] gi|192285355|gb|ACF01736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris TIE-1] Length = 629 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 156/625 (24%), Positives = 295/625 (47%), Gaps = 15/625 (2%) Query: 5 IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 +RKAS W+ K I + VL V F +WG++D +F G ST+ +G ++ F ++ Sbjct: 1 MRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQFRQTY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 L I ++ G + ++AR++G+D+++L ++ A LD+ +GL I Sbjct: 60 NDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMKSIL 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G + +F + F + + G E+ Y+ ++ R + G G+ P L+ Sbjct: 120 EDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEPPKTLMQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 +F E R++DY+ L + IA PS A LT +++ +K +RAPEY+++S+++ Sbjct: 180 ALSQFQNEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKVSFLVVTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K E+S+ + Q +E+ K+K +PE R + Q+VFP+ +EA A + G F LA Sbjct: 240 SIAKWAEVSDADAQKLFEQRKDKLSTPEKRQILQIVFPSVEEAQAARAKIASGTSFADLA 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +E+G D+ LG S+ + D +A + F+L + + + G FG V+ V+ I+P Sbjct: 300 KERGVKPGDLDLGLVSQSEMLDQKVAAAAFALPLN-EVSQPVQGQFGTVLLEVTKIEPGK 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + V + + +A ++V+E + ++E+ G S+ + +++ + ++ + +D Sbjct: 359 QPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVDALDR 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AG+ G VA+IP +L F + + D Y+W I P+ +R L+ Sbjct: 419 AGRGPDGAPVASIPQGLELANAAFNSEPGVDNDAISF--QNGYVWYDILGITPSHERPLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V+ W+ + E++ A +LV + + G D+ G ++ T + I R + Sbjct: 477 EVKDKVEAGWRAEQVTEKLRKLAAELV-QKMQGGAKLADVA-PAGVTVQTASGIKR-EGA 533 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQ 596 + + VF + + + VF+VT V + + L Q Sbjct: 534 DAGLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTGDTVPTADLNAPQMQQLKDNLVQ 593 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDN 621 + + + IA+L+ V+ Sbjct: 594 RLRDEQVGEYIAWLEKDIGTKVNQE 618 >gi|188584391|ref|YP_001927836.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium populi BJ001] gi|179347889|gb|ACB83301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium populi BJ001] Length = 634 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 159/640 (24%), Positives = 302/640 (47%), Gaps = 17/640 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F S+TV +VG+ + Sbjct: 1 MLQSIRSASQHWLGKVVLTVIF-TFLIAGVAIFGVEEFFRGGSSTTVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTADLGLAVSDAAVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V + Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R + L I P+ L+ +++ K ++RAPEY+ ++ ++ Sbjct: 180 AMREAVHRYSTERRDAAVLTLAPSVAGEIPAPTEEELSAYYDNNKASFRAPEYRSLNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 D K E+S +E + Y+ N ++ PE RT++Q+ FP++ A EA ++ G+ Sbjct: 240 LDPAALAKPDEVSEEEARKVYDANHSRFGKPERRTIQQISFPDEAAAKEARAKIESGETP 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A +G + LG+ +K + D ++ D+ F+L ++G + + G FG V+ V+ Sbjct: 300 FETVAAARGLDPKQLDLGTLTKAELFDPAVGDAAFAL-EQGKVSEPVKGRFGTVLLRVTA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I+P F EVK +I ++ + + + + +E+ A + EI++ + + + Sbjct: 359 IEPGTVKPFDEVKDEIRREIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 +P VD G D G+ VA IP KE L F D + + G +W + + P+ Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKTGGAIWYDVVKIDPS 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++ L EV + K W + + + +K+ +L K G+ + + G L T +I Sbjct: 478 HEKPLAEVRDEAVKGWTRAEVEKRLVAKSKELTERLEK-GEAIETLAQEAGLPLKTVGEI 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 R ++ + + ++F+ PV P +G VFKVT + + + Sbjct: 537 ARNQTKDD-LSTEIVERIFATPVGKAASAP--SGEGRAVFKVTAATMPAFVPGTPSDTQL 593 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 ++ L + D+L IA ++ V V+ ++R L GE Sbjct: 594 VASLRTAIADDVLAEFIAEVQKSAGVNVNQTALRRALGGE 633 >gi|39935954|ref|NP_948230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris CGA009] gi|39649808|emb|CAE28330.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodopseudomonas palustris CGA009] Length = 633 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 156/629 (24%), Positives = 295/629 (46%), Gaps = 15/629 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML +RKAS W+ K I + VL V F +WG++D +F G ST+ +G ++ F Sbjct: 1 MLRGMRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L I ++ G + ++AR++G+D+++L ++ A LD+ +GL Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F G + +F + F + + G E+ Y+ ++ R + G G+ Sbjct: 120 KSILEDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEAPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+ +F E R++DY+ L + IA PS A LT +++ +K +RAPEY++IS+++ Sbjct: 180 TLMQALSQFQSEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKISFLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K E+S+ + Q +E+ K+K +PE R + Q+VFP+ +EA + G F Sbjct: 240 VTPESIAKWAEVSDADAQKLFEQRKDKLSTPEKRQLLQIVFPSVEEAQAGRAKIASGTSF 299 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+G +D+ LG S+ + D +A + F+L + + + G FG V+ V+ I Sbjct: 300 ADLAKERGVKPADLDLGLVSQSEMLDQKVAAAAFALPLN-EVSQPVQGQFGTVLLEVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + + V + + +A ++V+E + ++E+ G S+ + +++ + ++ + Sbjct: 359 ETGKQPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVD 418 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D AG+ G VA+IP +L F + + D Y+W I P+ + Sbjct: 419 AIDRAGRGPDGAPVASIPQGLELANAAFNSEPGVDNDAISF--QNGYVWYDILGITPSHE 476 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V+ W+ + E++ A +LV + + G D+ G ++ T + I R Sbjct: 477 RPLDEVKDKVEAGWRAEQVTEKLRKLAAELVQKL-QGGAKLSDVA-PAGVTVQTASGIKR 534 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592 + + + VF + + + VF+VT V + + Sbjct: 535 -EGADAGLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTGDTVPTADLNAPQMQQLKD 593 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 L Q + + + IA+L+ V+ Sbjct: 594 NLVQRLRDEQVGEYIAWLEKDIGTKVNQE 622 >gi|306841864|ref|ZP_07474544.1| rotamase family protein [Brucella sp. BO2] gi|306287994|gb|EFM59396.1| rotamase family protein [Brucella sp. BO2] Length = 628 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEVHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q +K G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIKAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + + G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRVEEL-KKRLEGGTTLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|254714212|ref|ZP_05176023.1| rotamase family protein [Brucella ceti M644/93/1] gi|254717648|ref|ZP_05179459.1| rotamase family protein [Brucella ceti M13/05/1] gi|261219487|ref|ZP_05933768.1| rotamase [Brucella ceti M13/05/1] gi|261321982|ref|ZP_05961179.1| rotamase [Brucella ceti M644/93/1] gi|260924576|gb|EEX91144.1| rotamase [Brucella ceti M13/05/1] gi|261294672|gb|EEX98168.1| rotamase [Brucella ceti M644/93/1] Length = 628 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 180/631 (28%), Positives = 324/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G L++ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLNEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G+FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGNFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|306844003|ref|ZP_07476598.1| rotamase family protein [Brucella sp. BO1] gi|306275758|gb|EFM57482.1| rotamase family protein [Brucella sp. BO1] Length = 628 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 324/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ GSFG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGSFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|254706677|ref|ZP_05168505.1| rotamase family protein [Brucella pinnipedialis M163/99/10] gi|261314138|ref|ZP_05953335.1| rotamase [Brucella pinnipedialis M163/99/10] gi|261303164|gb|EEY06661.1| rotamase [Brucella pinnipedialis M163/99/10] Length = 628 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNPRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|209885424|ref|YP_002289281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] gi|209873620|gb|ACI93416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] Length = 704 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 158/638 (24%), Positives = 293/638 (45%), Gaps = 17/638 (2%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML IR + W+ + VL + F +WG++D +F S +T+ +VG ++ F Sbjct: 71 MLRGIRNVTSNRVGKWIMSLLFGVLIISFAVWGIAD-IFKGSTQTTLATVGNTEISMEQF 129 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ +L IS++I +N+ + R+ GLD+++L ++ A LD+ +GL + Sbjct: 130 RTAYTDKLQQISRQIRRPINANQGRAFGLDRQLLQQTIAEAALDEETRRLGLTMSDAEMI 189 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I+ P F G D KF F + + G E+ Y+ ++ R ++V V G+ PS Sbjct: 190 RTISGDPTFAGPDGKFDARRFAAAIRDNGYTEQRYVAEQRRVTLRRELVSSIVAGLEPSK 249 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ RF E R++DY + I PS VL +++++K +RAPEY+++ Y+ Sbjct: 250 TQIEALSRFQNEQRTIDYAKIGPEQAGTIETPSQQVLDTYYDEHKAQFRAPEYRKVVYLT 309 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 E KK+ +S+++ + Y+ +++Y +P R V Q+ FP++ A A + + G F Sbjct: 310 LSPDELAKKVAVSDEDARKVYDSRRDEYATPAKREVLQIAFPSEDAAKTAREKIAGGTSF 369 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E + DI+LG S+ + D ++A + F+L + + + G+ V+ ++ I Sbjct: 370 EDLAKEMKLTPGDINLGLTSEASLGDPTIAKAAFALPLN-EVSQPVKGALATVLLKITKI 428 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P +++ V I ++ + +E+ + G ++ E ++ + ++ + Sbjct: 429 EPGSQSTYESVAPAIKKEIAEQRVRADFDNLRNTIEDERSGGATIPEAGQKVGLDAVTVD 488 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +D AG+ GKE AA+P L+ FG D + D G +W + +RD Sbjct: 489 -IDRAGRTPDGKE-AALPKGVDLVTAAFGSDVGVENDPL--TFPGGEVWFDVLGVTASRD 544 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 R L+EV V W+ + A + +KA LV +K G F+ G S T++ R Sbjct: 545 RALDEVKDQVATRWREDQVATRLRAKAKDLVEAINKGGA-FKTEATKAGLSAQTSSPFKR 603 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVG----PVQEKDKFI 591 D N + F P + G VV KV N ++ K Sbjct: 604 DDKVNG-LPDQAVDVAFRTPKDTAATADNGAAGNGLVVLKVVNVTTPTVDLESEDSKKMK 662 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L Q ++ + + I +L+++ V V+ N Sbjct: 663 EALEQNLSDEQIGQYITHLEAKAGVQVNQNAFAIATGA 700 >gi|23502017|ref|NP_698144.1| rotamase family protein [Brucella suis 1330] gi|161619091|ref|YP_001592978.1| rotamase family protein [Brucella canis ATCC 23365] gi|254704427|ref|ZP_05166255.1| rotamase family protein [Brucella suis bv. 3 str. 686] gi|254710215|ref|ZP_05172026.1| rotamase family protein [Brucella pinnipedialis B2/94] gi|256031709|ref|ZP_05445323.1| rotamase family protein [Brucella pinnipedialis M292/94/1] gi|256369565|ref|YP_003107075.1| rotamase family protein [Brucella microti CCM 4915] gi|260566326|ref|ZP_05836796.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40] gi|261317773|ref|ZP_05956970.1| rotamase [Brucella pinnipedialis B2/94] gi|261755104|ref|ZP_05998813.1| rotamase [Brucella suis bv. 3 str. 686] gi|265988804|ref|ZP_06101361.1| rotamase [Brucella pinnipedialis M292/94/1] gi|23347969|gb|AAN30059.1| rotamase family protein [Brucella suis 1330] gi|161335902|gb|ABX62207.1| rotamase family protein [Brucella canis ATCC 23365] gi|255999727|gb|ACU48126.1| rotamase family protein [Brucella microti CCM 4915] gi|260155844|gb|EEW90924.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40] gi|261296996|gb|EEY00493.1| rotamase [Brucella pinnipedialis B2/94] gi|261744857|gb|EEY32783.1| rotamase [Brucella suis bv. 3 str. 686] gi|264661001|gb|EEZ31262.1| rotamase [Brucella pinnipedialis M292/94/1] Length = 628 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|62290052|ref|YP_221845.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941] gi|82699979|ref|YP_414553.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar Abortus 2308] gi|189024292|ref|YP_001935060.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19] gi|237815561|ref|ZP_04594558.1| rotamase family protein [Brucella abortus str. 2308 A] gi|254689364|ref|ZP_05152618.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 6 str. 870] gi|254697497|ref|ZP_05159325.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 2 str. 86/8/59] gi|254730394|ref|ZP_05188972.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 4 str. 292] gi|256257610|ref|ZP_05463146.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 9 str. C68] gi|260546604|ref|ZP_05822343.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038] gi|260754881|ref|ZP_05867229.1| rotamase [Brucella abortus bv. 6 str. 870] gi|260758098|ref|ZP_05870446.1| rotamase [Brucella abortus bv. 4 str. 292] gi|260761922|ref|ZP_05874265.1| rotamase [Brucella abortus bv. 2 str. 86/8/59] gi|260883893|ref|ZP_05895507.1| rotamase [Brucella abortus bv. 9 str. C68] gi|297248452|ref|ZP_06932170.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str. B3196] gi|62196184|gb|AAX74484.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941] gi|82616080|emb|CAJ11118.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar Abortus 2308] gi|189019864|gb|ACD72586.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19] gi|237788859|gb|EEP63070.1| rotamase family protein [Brucella abortus str. 2308 A] gi|260095654|gb|EEW79531.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038] gi|260668416|gb|EEX55356.1| rotamase [Brucella abortus bv. 4 str. 292] gi|260672354|gb|EEX59175.1| rotamase [Brucella abortus bv. 2 str. 86/8/59] gi|260674989|gb|EEX61810.1| rotamase [Brucella abortus bv. 6 str. 870] gi|260873421|gb|EEX80490.1| rotamase [Brucella abortus bv. 9 str. C68] gi|297175621|gb|EFH34968.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str. B3196] Length = 628 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626 >gi|256061222|ref|ZP_05451373.1| rotamase family protein [Brucella neotomae 5K33] gi|261325229|ref|ZP_05964426.1| rotamase [Brucella neotomae 5K33] gi|261301209|gb|EEY04706.1| rotamase [Brucella neotomae 5K33] Length = 628 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++TW+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQTWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQKRSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|225627608|ref|ZP_03785645.1| rotamase family protein [Brucella ceti str. Cudo] gi|256159868|ref|ZP_05457597.1| rotamase family protein [Brucella ceti M490/95/1] gi|256255110|ref|ZP_05460646.1| rotamase family protein [Brucella ceti B1/94] gi|260168841|ref|ZP_05755652.1| rotamase family protein [Brucella sp. F5/99] gi|261222305|ref|ZP_05936586.1| rotamase [Brucella ceti B1/94] gi|261758329|ref|ZP_06002038.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99] gi|265998269|ref|ZP_06110826.1| rotamase [Brucella ceti M490/95/1] gi|225617613|gb|EEH14658.1| rotamase family protein [Brucella ceti str. Cudo] gi|260920889|gb|EEX87542.1| rotamase [Brucella ceti B1/94] gi|261738313|gb|EEY26309.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99] gi|262552737|gb|EEZ08727.1| rotamase [Brucella ceti M490/95/1] Length = 628 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTESAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|254701881|ref|ZP_05163709.1| rotamase family protein [Brucella suis bv. 5 str. 513] gi|261752444|ref|ZP_05996153.1| rotamase [Brucella suis bv. 5 str. 513] gi|261742197|gb|EEY30123.1| rotamase [Brucella suis bv. 5 str. 513] Length = 628 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAACNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GLAATEQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|254719202|ref|ZP_05181013.1| rotamase family protein [Brucella sp. 83/13] gi|265984198|ref|ZP_06096933.1| rotamase [Brucella sp. 83/13] gi|306837950|ref|ZP_07470808.1| rotamase family protein [Brucella sp. NF 2653] gi|264662790|gb|EEZ33051.1| rotamase [Brucella sp. 83/13] gi|306406874|gb|EFM63095.1| rotamase family protein [Brucella sp. NF 2653] Length = 628 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++ ++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAISVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + I PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADTIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ GSFG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGSFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + VD Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|118589929|ref|ZP_01547333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata IAM 12614] gi|118437426|gb|EAV44063.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata IAM 12614] Length = 630 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 179/635 (28%), Positives = 315/635 (49%), Gaps = 10/635 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + TWVAK+F+ +L + F +WG+S L V G +T VG +V F ++ Sbjct: 1 MLDALRKGAGTWVAKLFIALLIMSFAVWGISGFLTGV-GQNTAAKVGDTEVSLFDFDRAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+LG ++Q+ G + ++G+ ++ L LV+ A ++ +++ L R+ I Sbjct: 60 RQDLGRLAQQFGRQLTPAEGAALGVPQQTLGKLVAEAAMNNTAQNMKLGVSDERLATIIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G ++ + L G E EY+ K+ R + G M+ L+ Sbjct: 120 SDPAFQGPGGRYDKNRLQQVLRASGYREDEYVVERRKVAERAQLAEGIAGSMKAPMTYLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E RS DY+++ + I DP+ VLT +FE+ K+++RAPE++ I Y+ Sbjct: 180 VLDTYQGETRSADYLMVTPEFIGEIEDPAEDVLTTYFEEKKEDFRAPEFREIKYVTLTPA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+D+ +AEYE+ E +F PE R + Q+ FP+Q+ A+EA Q L GK F +L Sbjct: 240 SLARPDDISDDDARAEYERRSEDFFQPERRKIRQMSFPSQQAAEEAAQELANGKTFDELM 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ + +D++LG +K D ++ D+ FS ++G + + G F VI +V I P Sbjct: 300 GERNLTDNDVTLGVMAKADFLDEAIGDAAFS-QEEGATSGAVEGRFSTVIVNVEEILPES 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F++VK +I + +A ++ + +E+ A G +DE+ R + D Sbjct: 359 TKPFEDVKDEIVQSLAKEQAEREILDLLDEVEDARAGGALLDEVGERFSLTVETPAAFDA 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +G GK AA+P E L+ F D + D + + ++W + + IP+R+R L+ Sbjct: 419 SGNGEDGKP-AALPEAEGLVAGTFDSDIGIEND-VLQFGEQGFLWYDVVKVIPSRERTLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV DV WK + A+ +S A L+ + ++ G F + G + + ++ R + Sbjct: 477 EVRADVIAAWKKDELAKRLSDTAADLLAK-TEGGTPFIALSAETGLEVKSATELKR-NTP 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596 FG D +S VFSGP+ +G VV KVT S V + L+Q Sbjct: 535 AGDFGRDAVSAVFSGPIGTTAIAEANDGEGRVVLKVTGSNVPEFQKDAPQVAALGQQLSQ 594 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 + LL I+ +++ V +++ I + + ++ Sbjct: 595 QIQDTLLGQFISDRETKAGVEINNAGIAQMIGLDQ 629 >gi|148560591|ref|YP_001259060.1| rotamase family protein [Brucella ovis ATCC 25840] gi|148371848|gb|ABQ61827.1| rotamase family protein [Brucella ovis ATCC 25840] Length = 628 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 324/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 S EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKSLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|163843404|ref|YP_001627808.1| rotamase family protein [Brucella suis ATCC 23445] gi|163674127|gb|ABY38238.1| rotamase family protein [Brucella suis ATCC 23445] Length = 628 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G + +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATTADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|227822015|ref|YP_002825986.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234] gi|227341015|gb|ACP25233.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234] Length = 630 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 191/631 (30%), Positives = 335/631 (53%), Gaps = 8/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A++T + K L +L + F++WG L S VV+VG KV S + ++ Sbjct: 1 MLDSLRNAAQTRIVKGLLAILILSFMVWG-GQTLMVTGTSDAVVTVGDVKVSTSDYRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++L ++S+++G + ++AR+ G++ ++ LV+GA LDQ ED+ L R+ I Sbjct: 60 ERQLSLLSRQLGTPLTRQQARAFGVEAQVYSQLVAGAALDQLAEDMNLGLSEDRLARLIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG + +F F S L G+ E++YI + +++ R+ +V G +L+D Sbjct: 120 EDPAFHGANGQFDRMTFSSVLRNAGLTEQDYIKNRSQVAVRSQIVDALSDGFAAPAILVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R++DY++L+N ++ A+ P + VL WFE +K NYRAPEY++ SYI + Sbjct: 180 AVGKYRHETRTIDYLLLSNANIDAVKAPGDDVLAPWFESHKANYRAPEYRKFSYIKLEPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++++EL+A+YEK KE + + RT+EQL FP+++ AD L G F L Sbjct: 240 DLVVNDAVTDEELRADYEKRKESFRTAATRTIEQLAFPSREAADAGAAKLSAGTSFDDLV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +GKS +D+ LG F+KE +PD A++ F++A G TPV+ G+FG VI V+NI+ Sbjct: 300 KAEGKSAADVLLGDFTKERMPDQKAAEAAFAVASDGGVTPVVEGAFGPVILRVTNIRQET 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 SF EVK+++ + ++ A +++ + ++E+ A G ++ E++ + K+ + +D Sbjct: 360 VRSFDEVKEELRKDIALSVARDQLVGLHDKIEDERAAGATVKEVADQLKLKLATVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 GKD G +V +P + LL VF + L V + Y W ++E IPARDR L+ Sbjct: 420 TGKDQNGDDVTGLPEQRALLQDVFKAEVGLET-LAVHIGRDGYAWFDLEEVIPARDRTLD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +V DW + + + + K+G DI LG + T ++R + Sbjct: 479 EVRDEVAADWTAEQ-QRVALAAKAAELKDRVKKGAKLADIAGELGLVVETKTGLSR-STQ 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 + I+ F GP V ++ +VT + + I + + Sbjct: 537 DAALSEAAIAAAFGGPNGHVANAAGMGSEGQILMQVTAVDDSAPANALDNDSRQIEAIAR 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+LD ++A L+S Y V+++ L ++ L Sbjct: 597 ASGDDILDQMVATLQSVYGVSINQTLAEQAL 627 >gi|17987128|ref|NP_539762.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1 str. 16M] gi|225852638|ref|YP_002732871.1| rotamase family protein [Brucella melitensis ATCC 23457] gi|256044795|ref|ZP_05447699.1| rotamase family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113701|ref|ZP_05454505.1| rotamase family protein [Brucella melitensis bv. 3 str. Ether] gi|256263869|ref|ZP_05466401.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2 str. 63/9] gi|260565602|ref|ZP_05836086.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1 str. 16M] gi|265991219|ref|ZP_06103776.1| rotamase [Brucella melitensis bv. 1 str. Rev.1] gi|265995055|ref|ZP_06107612.1| rotamase [Brucella melitensis bv. 3 str. Ether] gi|17982791|gb|AAL52026.1| peptidyl-prolyl cis-trans isomerase d [Brucella melitensis bv. 1 str. 16M] gi|225641003|gb|ACO00917.1| rotamase family protein [Brucella melitensis ATCC 23457] gi|260151670|gb|EEW86764.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1 str. 16M] gi|262766168|gb|EEZ11957.1| rotamase [Brucella melitensis bv. 3 str. Ether] gi|263002003|gb|EEZ14578.1| rotamase [Brucella melitensis bv. 1 str. Rev.1] gi|263094000|gb|EEZ17934.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2 str. 63/9] gi|326409157|gb|ADZ66222.1| rotamase family protein [Brucella melitensis M28] gi|326538867|gb|ADZ87082.1| rotamase family protein [Brucella melitensis M5-90] Length = 628 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 179/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +P+ RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPKTRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626 >gi|254693848|ref|ZP_05155676.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 3 str. Tulya] gi|261214133|ref|ZP_05928414.1| rotamase [Brucella abortus bv. 3 str. Tulya] gi|260915740|gb|EEX82601.1| rotamase [Brucella abortus bv. 3 str. Tulya] Length = 628 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 179/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I L T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELDLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626 >gi|294852479|ref|ZP_06793152.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026] gi|294821068|gb|EFG38067.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026] Length = 628 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 180/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + I ++Y+++ K+ R +V GM+ + +L Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSSIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RS DYI + + AI PS VL +FE +K++Y+APEY++ISY+ + Sbjct: 181 ALALYQGESRSADYIDVPAKKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ + Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+ Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I N + A+ + + E+ + G +M +++++ + + + +D Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L + ++G I LG T I R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G +V + + ++FKVT GP + YL Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + D+L ++ L+ QY V V+ +I L Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626 >gi|110633989|ref|YP_674197.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium sp. BNC1] gi|110284973|gb|ABG63032.1| peptidyl-prolyl cis-trans isomerase D [Chelativorans sp. BNC1] Length = 628 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 325/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RKA+ TWVAK+ LVVL V F +WG+S ++ + + V++ G V + ++ Sbjct: 1 MLDSLRKAATTWVAKLLLVVLVVSFAVWGISGSMLTGTSGD-VITAGGTSVSALDYRLAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +S++ G + E+A + G+D+++L L +GA LD+ +IGL ++ A Sbjct: 60 DRRIAELSRQFGTRLTREQAVAFGIDEQVLSQLSAGAVLDETAREIGLGVSKDKLAELTA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G D +F F L+R G+ ++Y+ + + R ++ G+ + LL Sbjct: 120 SDPAFRGLDGRFDRSQFEFVLSRIGMRPEDYLKNREQAAVRQQIIDAVASGVSAPDELLR 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R+ E+R+++Y+ L V + PS+ L WFE+ KDNY APEY++I Y+ + Sbjct: 180 SLARYRGEDRTIEYVALPRSAVEPVEPPSDEQLQTWFEERKDNYAAPEYRKIEYVKLEAE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + IS++++++ Y++N+ +Y +PE R VEQL F + +EA A +S++ G F L Sbjct: 240 DIADPSVISDEQVESYYQQNQAQYTTPERRQVEQLTFASAEEATAARESMRTGTTFEDLI 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E QGK L D+SLG+ ++ IPD +AD++FSL + + V+ G+FG V+ V+ I P Sbjct: 300 ERQGKKLQDVSLGTLTRADIPDQVIADAVFSLTED-QVSDVVQGTFGPVLLRVTEITPEA 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +VK++I Q+ + +A+ + + Y + E+ A G ++ E + R + + VD Sbjct: 359 VTPLDQVKEEIRQQLALDEANRLLLDTYDQYEDARAGGDTLQEAAERLSLTVGTIDAVDR 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G G V +P LL F + + ++ + L +++ ++ E +PARDR+ Sbjct: 419 DGNKPDGTRVEDVPNLPALLAEAFQTEVGV-ENAPINLTGSGFLFYEVAEIVPARDREFS 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V +DW + + ++A L E K GK +I LG + + R + Sbjct: 478 EVRDRVLEDWTEAEVTSRLDARAKAL-QEEIKNGKTLDEISTELGQEKMVKRGLKR-EAS 535 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQ 596 + G G++ VFS G + +F+VT D + + Q Sbjct: 536 DADLGQTGVAAVFSVAKGETGTVANPAGDARFIFQVTEVFEPASATAESLPDDIKTAVNQ 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + DLLD ++ L++++ VTV+ +Q+ L Sbjct: 596 GLENDLLDQLVTRLQAEHGVTVNRTAMQQAL 626 >gi|319783646|ref|YP_004143122.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169534|gb|ADV13072.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 630 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 179/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 ML I+R A+ TWVAK LV+L + FL+WG+S L +G +V++ G KV + + + Sbjct: 1 MLGILRSAAGTWVAKGLLVLLVLSFLVWGVSGRLMGGLAGHDSVITAGGTKVSINEYRLA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++L ++SQ+ G ++ E+A+++G+D ++L LVSGA LD+ +GL R+ Sbjct: 61 YDRQLAVMSQQFGQRLSHEQAKALGVDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F G +F F L + G+ ++Y+ + ++ R +V G++ + Sbjct: 121 REDPAFKGPGGQFDRRTFEYMLQQIGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E+R++DY+ L V IA PS++VL+ +FE K Y APEY++ SY+ + Sbjct: 181 KAVALYRGEDRTIDYLTLPKALVEPIAAPSDSVLSAYFEANKKTYAAPEYRKFSYVRLEP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L Sbjct: 241 VDIMDPTAVTDQQVSDDYNKNKARYTTPELRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +GK+ +D LG+ +K+ I D ++AD+ F+L + + V+ G+FG V+ V+ IKP Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFAL-NANEVSQVVQGAFGPVLLRVTEIKPE 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 EV I + + +AS + + ++ A G+S+ + + + K+ + + +D Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVRDNYDDTRAAGSSLADAAAKLKLKVVTIDAID 419 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +G V +P +L+ VF + P +++ + D +++ ++ PARDR L Sbjct: 420 RSGLRPDASIVKDLPQSPELIKAVFDAE-PNTENDALTTADNGFVFYEVASITPARDRTL 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV V DW +T++ +++KA++L + K G I L T + R + Sbjct: 479 DEVRQKVVADWTAAETSKRLAAKADEL-EKRLKAGATLDVIASELKLEKQTKRGVKR-EA 536 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLT 595 ++ FG +G + +F P G +++KV + D T Sbjct: 537 DDVDFGKEGAAAMFGVGEGGTGLIPSPTGDGQILYKVAEVFEPAGADASSVPDDAQKSFT 596 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 M+ DLLD ++A L++QY V V + + Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRVDQAAVAQA 627 >gi|154248299|ref|YP_001419257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter autotrophicus Py2] gi|154162384|gb|ABS69600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter autotrophicus Py2] Length = 630 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 163/630 (25%), Positives = 302/630 (47%), Gaps = 8/630 (1%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ +RK + W+AKIFLV+L + FL+WG++D +F G+++V SVG ++ +F + Sbjct: 3 LQTLRKGASGWIAKIFLVILTLSFLVWGIAD-VFRGMGATSVASVGATEISADAFRRQYL 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 +L IS++ G ++ ++AR+ GLD++IL+ +++ ATLD+ + L ++ EIA Sbjct: 62 DQLQQISRRAGRPISPDQARAFGLDRQILNQMIADATLDEQASRLALAVSDEQIAREIAD 121 Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P + F F L + E+ ++ + R ++ G+ +L+D Sbjct: 122 NPNYRRPGATSFDPAYFQQLLRSNNLTEQRFVASERQRAVRDQLLKSLGAGVAVPQVLID 181 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 RF E R+ Y+ + +A P++ VL +F+ +K +RAPEY++IS + Sbjct: 182 AVGRFENETRTASYVRVTPAAAGPLAAPTDEVLRAYFDAHKVTFRAPEYRKISVLALTPA 241 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ + +A+YE+N ++ +PE R V+Q+VF + +A A + +K G F +A Sbjct: 242 TLAAAETVTEADAKADYERNLSRFGTPERREVQQIVFTSAADALAADEKIKAGASFADIA 301 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +G + D LG +K I D +AD+ FS+ + G + V G FG V+ HV+ ++P Sbjct: 302 AARGLTAKDTDLGLVAKSAILDPKIADAAFSMPE-GAVSAV-EGRFGTVLVHVTKVEPGA 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 F+ VK I+ +R+ +A + + + ++E+ A G+++ E++++ + VD Sbjct: 360 RQPFEAVKDQISADLRLDRARRALLDKHDQVEDERASGSTLAEVAQKLGLRLQTFDAVDR 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +G G A +P +L F + D +G ++W + PARDR + Sbjct: 420 SGHTPSGDP-ADVPGGADVLSGAFAAQPGVETDTVQLPQNGGFVWYETNAITPARDRTFD 478 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 E + V W +T + V +KA L L+ +K G + L + R Sbjct: 479 EAKSAVTARWTESETEKAVEAKATAL-LDKAKAGTPLAQVAAEADLPLQIAEGLRR-GRA 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMN 599 F + I+ VF VVF+VT V P S L++ + Sbjct: 537 AGPFSAESIASVFDVKEGGFGIALAATEPDRVVFEVTKIMVPPPDMDTSRASAELSRQIE 596 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 D+L ++ ++ + V ++D L + Sbjct: 597 NDVLLQYLSAIQKEIGVKINDKLFAQATGA 626 >gi|254503805|ref|ZP_05115956.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11] gi|222439876|gb|EEE46555.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11] Length = 635 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 294/628 (46%), Gaps = 10/628 (1%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +RK + TW+AK+F+ +L F IWG++D L G +TV VG ++V F ++Q+L Sbjct: 1 MRKGAGTWIAKLFIALLIFSFAIWGVTDFLQGY-GQNTVAKVGEKEVSLLEFDRMYRQDL 59 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + Q+ G + + S+G+ ++ L L+ A + +++ + R+ I P Sbjct: 60 NRLGQQFGRPLTPQEGASLGIPQQALARLIGQAAMSNAAQELKVGISDDRLGAIIQSDPA 119 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G ++ L E EY+ + R V+ +GGM L Sbjct: 120 FQGASGRYDRSRLQQVLNANDYREDEYVVLRRQEAERGQVIEGLIGGMSAPQAYLAAFDA 179 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 F E RSV+Y+ + + I DP+ L +++ K ++RAPEY+ I Y+ + Sbjct: 180 FQNETRSVEYVAIAAEQIGDIEDPAEDTLVTYYDGKKADFRAPEYREIRYVELVPSALAR 239 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 +I++ + ++EY++ + PE R V QL F + ++A A Q+L GK F L ++ Sbjct: 240 PEDITDADARSEYDRRISDFAEPERRRVRQLSFNSDEDAQAAAQALAGGKTFADLMADRN 299 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + +D++LG S+ D ++ D+ F+L+ GD + V+ G F VI +V I P+ T F Sbjct: 300 LTNNDVTLGVMSRADFLDDAIGDAAFTLS-AGDTSDVVEGRFSNVIVNVEEIIPANTTPF 358 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +V+ +I ++ + +A ++ + +E+ A G +DEI R + D GK Sbjct: 359 ADVRDEIVEELALEQAEREILDLLDEVEDARAGGALLDEIGERFSLAVKSTGSFDRDGKT 418 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 + A +P E L+ F D + D + + + Y+W + P RDR L+EV Sbjct: 419 TIETD-AILPDAEGLIAGAFDSDIGIEND-VLQIGNRGYLWYDVTSVTPERDRDLDEVRD 476 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V WK+ + E +S KA L+ + ++ G + D+ G S+ T + R Sbjct: 477 QVIAAWKSDQLNERLSQKATDLLAK-AESGTSLGDLAAAEGVSVQTAEGVTR-SMPTGDL 534 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNK 600 G D ++ +F GP V +G VV KVT S++ E L+Q + Sbjct: 535 GSDALTAIFEGPAGSVATAESADGNGRVVLKVTGSEIPEFSPETSEVTALEGQLSQQVQN 594 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 LLD +A +++ V ++ + + + Sbjct: 595 SLLDLFVAEQETRAGVEINSAAVAQVMG 622 >gi|254469828|ref|ZP_05083233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp. JE062] gi|211961663|gb|EEA96858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp. JE062] Length = 628 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 165/632 (26%), Positives = 309/632 (48%), Gaps = 12/632 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + +W AKI + +L + F +WG++D +F+ GS++V SVG +++ F ++ Sbjct: 1 MLDALRNSVGSWFAKILIGLLVLSFAVWGIAD-VFTGIGSTSVASVGDKEISAQDFQRAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +EL +S+++G V E+A + G+ ++L LV+ A LD + + + I Sbjct: 60 SRELDQLSRRVGQPVTQEQAAAFGVPAQVLGRLVAEAALDNEASKLRIGVSDEAIIKTIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G + + + L G++E E++ + R + +GG+ +L+ Sbjct: 120 ETPAFQGVNG-YDRNRLGQVLYNLGMSEDEFVMQQQLVAERQQLAEAVIGGIVVPETMLE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ E R+V+Y+VL + + P++ L +FE+ K NY+APEY+ + I Sbjct: 179 AFDKYAMEERTVEYLVLPKSSLTDVPAPTDEELNAFFEENKGNYKAPEYRSATIIELTSD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K ++++E+ EYE+ K +Y S E R + Q+ FP ++EA+ A + GK F L Sbjct: 239 KIAKPENVTDEEIAQEYERTKNRYQSQEQRRIYQISFPTKQEAEAAVVEMDSGKTFEDLM 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ + D+ LG +K D +AD+ F+L ++G + V+ G F I +KP+ Sbjct: 299 NERDLTEKDVDLGLMNKAGFLDQKIADAAFAL-QEGQASNVVEGQFTNAILFAKEVKPAA 357 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 ++VK ++ + A+++V++ + +E+ A G++ +EI+ R + I+ P D Sbjct: 358 VQPLEDVKDELRTVVAQANAADEVEDLFNEVEDARAGGSTFEEIAERFDLELINTPAFDA 417 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +G + G+ V +P +L VF D + D + + ++W ++KE P+RDR+L Sbjct: 418 SGNNEAGETV-ELPIANELTTAVFSTDVGVEND-PLEIGRTGHLWYEVKEVTPSRDRELS 475 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DW +T E + KA L+ E + GK+ +I G + T+ R Sbjct: 476 EVKEAVTADWTANRTGELLEEKAKTLIAE-VEAGKSLSEIAAAEGLTTTTSQPFTRNGGV 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596 G I+ FSGP P N ++ +T++ + + + LT Sbjct: 535 QGLSGSA-ITAAFSGPKGTAAQVPGNNED-RILLVLTDTTAPAFMTESENAQRINTQLTG 592 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + LL+ I L+ V V+ + + Sbjct: 593 ALESSLLNQFINQLEQTEGVLVNQAVFNQLTG 624 >gi|218549891|ref|YP_002383682.1| peptidyl-prolyl cis-trans isomerase [Escherichia fergusonii ATCC 35469] gi|218357432|emb|CAQ90071.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia fergusonii ATCC 35469] Length = 638 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 273/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 16 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 74 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ D+ L +V Sbjct: 75 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQ 134 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + + L + G++ +Y L+ ++ G Sbjct: 135 AIFATPAFQ-VDGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKG 193 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ S+A +T +++++K+N+ PE R+SYI+ Sbjct: 194 ETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIML 253 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++++++ P+ + + EA +L G F Sbjct: 254 DAANI--QQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFA 311 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+E+ + + LG P L D+ L KG + VI S G+++ + Sbjct: 312 ELAKEKSADIISARNGGDLGWLEDSTTP-QELKDA--GLKDKGQLSGVIKSSVGFLVVRL 368 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ + EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 369 DDVQPAKVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 426 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + + +E+ P + + + G++ + + DG +V ++ E Sbjct: 427 KAKETGWFSQQNLPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEH 486 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV VK + K ++ +A +L++E K GK D + G Sbjct: 487 KAEAIKPLSEVKDQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGV-DAMRAAGLQFGEQ 544 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + V+ + K G P +K Sbjct: 545 KTLSRSGQD----PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLALDEVKAGTMPEAQK 600 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 601 QALVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 638 >gi|187732708|ref|YP_001879152.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii CDC 3083-94] gi|187429700|gb|ACD08974.1| peptidylprolyl isomerase [Shigella boydii CDC 3083-94] Length = 623 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 267/638 (41%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIHPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + KD +E+ P + + + G++ + + DG ++I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300924168|ref|ZP_07140160.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1] gi|301049648|ref|ZP_07196597.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1] gi|300298585|gb|EFJ54970.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1] gi|300419621|gb|EFK02932.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1] Length = 623 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 124/636 (19%), Positives = 271/636 (42%), Gaps = 24/636 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA+E+ + G ++ D ++ D + L +KG + VI S G++I + + Sbjct: 297 ALAKEKSADIISARNGG-GMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDD 355 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 356 IQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKA 413 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIP 473 + KD +E+ P + + + G++ + + DG +V +I E P Sbjct: 414 TQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKP 473 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 474 EAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKT 531 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDK 589 ++R + + P + + + + + V+ + K G P +K Sbjct: 532 LSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKA 587 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 588 MVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|218675330|ref|ZP_03524999.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli GR56] Length = 579 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 191/566 (33%), Positives = 326/566 (57%), Gaps = 3/566 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +R+A++TWVAK+ L++L F +WG+S L S S+TVV+VG Q+V + F ++ Sbjct: 17 MFHFLRRAAQTWVAKLLLLLLVASFGVWGVSRELISGGNSTTVVTVGDQRVGVNEFHLAY 76 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + Q+ G + E+AR+ G+++++L L++GA+LDQ D+ L R+ I Sbjct: 77 QRQVASLGQQFGMRLTPEQARAFGVEQQVLSQLIAGASLDQLAADMNLGLSEDRLAQLIG 136 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F ++FVSRL I++ +YI +K+ R+ +V G L+D Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNANIHQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 196 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 K + E+R+VDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+ Sbjct: 197 AMKLYGDESRAVDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKIAYLKLQPA 256 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +LK G F QL Sbjct: 257 DIADVASVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 316 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIK Sbjct: 317 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 376 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +F EVK++I Q+ ++ AS++V + ++E+ A G ++++I+ + K+ ++ + VD Sbjct: 377 VKNFDEVKEEIRKQLALSNASQEVINVHDQIEDLRAGGATLEDIAAQLKLKAMTVDAVDA 436 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D GKEV P K+QLL F + + + + + Y+W ++E P RDR + Sbjct: 437 TGADKDGKEVKDTPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 495 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV +DW + E++ KA++L E K G DI LG ++ + + I R + Sbjct: 496 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIAAPLGIAVESKSSITR-STD 553 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIE 566 + G G+ FSGPV+ V Sbjct: 554 DAVLGRAGVKAAFSGPVDTVASAVGA 579 >gi|82775652|ref|YP_401999.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella dysenteriae Sd197] gi|81239800|gb|ABB60510.1| putative protease maturation protein [Shigella dysenteriae Sd197] Length = 623 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDNLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA ++R KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVRHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|215485522|ref|YP_002327953.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O127:H6 str. E2348/69] gi|215263594|emb|CAS07924.1| peptidyl-prolyl cis-trans isomerase D (rotamase D) [Escherichia coli O127:H6 str. E2348/69] Length = 623 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKNLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300903291|ref|ZP_07121219.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1] gi|301301592|ref|ZP_07207727.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1] gi|300404586|gb|EFJ88124.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1] gi|300843089|gb|EFK70849.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1] gi|315256269|gb|EFU36237.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1] Length = 623 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQTAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|157159968|ref|YP_001457286.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli HS] gi|312970538|ref|ZP_07784719.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70] gi|157065648|gb|ABV04903.1| peptidylprolyl isomerase [Escherichia coli HS] gi|310337187|gb|EFQ02325.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70] Length = 623 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V QK+ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQKISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|283784267|ref|YP_003364132.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium ICC168] gi|282947721|emb|CBG87276.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium ICC168] Length = 624 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 280/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L ++ L+ L+ A LDQ+ ++ L +V Sbjct: 60 NGERNRMQQQLGDQYSELAANEGYMKTLRQQTLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFSTPAFQ-VDGKFDNNHYNALVIQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + + A + + ++E++K+N+ PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D +K +++ ++Q+ Y+++++++ P+ + + EA +L KG F Sbjct: 239 DAAAMQKP--VTDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDEAKAVLDALNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + +PD L +KG + VI S G++IA + Sbjct: 297 TLAKEKSADIISACNGGDMGWLEEATMPD---ELKNAGLKEKGQLSGVIKSSVGFLIARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ EV DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDVQPAKVKPLSEVHDDIAAKVKQEKALDAFFALQQKVSD--AANNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D +E+ P + + + G++ ++ + DG ++V +I E Sbjct: 412 KAVETGWFSRDSLPEELNFKPVSDAIFDGSLVGENGTPGRNSDIITVDGDRVFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L +V V + K K A++ A +L++E K GK + K G S Sbjct: 472 KAEAVKPLADVKDQVTERVKYDKAAQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGAQ 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + + S P + + + N + + VV + K G P +K Sbjct: 530 KTLSRTNQD----PVSQAAFALSLPAKDKPGYGMANDMQGNVVVLALDEVKAGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D + Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDAMEQQ 623 >gi|194435312|ref|ZP_03067524.1| peptidylprolyl isomerase [Shigella dysenteriae 1012] gi|194416444|gb|EDX32601.1| peptidylprolyl isomerase [Shigella dysenteriae 1012] gi|332085739|gb|EGI90903.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 155-74] Length = 623 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 121/634 (19%), Positives = 261/634 (41%), Gaps = 20/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFAIPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDGLNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + KD +E+ P + + + G++ + + DG ++I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 ++R + + ++ + +V P +K + Sbjct: 530 KTLSRSGRDPISQAAFALPLPAKDKPNYGMATDMQGNVVLLVLDEVKQGSMPEDQKKAMV 589 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +TQ + + +++++ L+ + + + D L Q+ Sbjct: 590 QGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|16128426|ref|NP_414975.1| periplasmic folding chaperone, has an inactive PPIase domain [Escherichia coli str. K-12 substr. MG1655] gi|26246452|ref|NP_752491.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli CFT073] gi|74311016|ref|YP_309435.1| peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss046] gi|82542929|ref|YP_406876.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii Sb227] gi|89107311|ref|AP_001091.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12 substr. W3110] gi|91209515|ref|YP_539501.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89] gi|110640702|ref|YP_668430.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 536] gi|117622701|ref|YP_851614.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli APEC O1] gi|170021186|ref|YP_001726140.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli ATCC 8739] gi|170080027|ref|YP_001729347.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli str. K-12 substr. DH10B] gi|188496348|ref|ZP_03003618.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638] gi|191173673|ref|ZP_03035197.1| peptidylprolyl isomerase [Escherichia coli F11] gi|193067528|ref|ZP_03048495.1| peptidylprolyl isomerase [Escherichia coli E110019] gi|218557351|ref|YP_002390264.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli S88] gi|218688305|ref|YP_002396517.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ED1a] gi|218703725|ref|YP_002411244.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMN026] gi|227884548|ref|ZP_04002353.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 83972] gi|237707564|ref|ZP_04538045.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA] gi|238899729|ref|YP_002925525.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli BW2952] gi|256023940|ref|ZP_05437805.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia sp. 4_1_40B] gi|293403562|ref|ZP_06647653.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412] gi|293408591|ref|ZP_06652430.1| conserved hypothetical protein [Escherichia coli B354] gi|298379174|ref|ZP_06989055.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302] gi|300900512|ref|ZP_07118679.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1] gi|300918176|ref|ZP_07134783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1] gi|300947906|ref|ZP_07162054.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1] gi|300958009|ref|ZP_07170173.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1] gi|300988004|ref|ZP_07178484.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1] gi|301025663|ref|ZP_07189181.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1] gi|301330692|ref|ZP_07223294.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1] gi|301647367|ref|ZP_07247179.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1] gi|306813091|ref|ZP_07447284.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli NC101] gi|307137086|ref|ZP_07496442.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli H736] gi|307312181|ref|ZP_07591817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W] gi|309794826|ref|ZP_07689247.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7] gi|312964534|ref|ZP_07778790.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75] gi|331640961|ref|ZP_08342096.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H736] gi|331651379|ref|ZP_08352404.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M718] gi|331656498|ref|ZP_08357460.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA206] gi|331661822|ref|ZP_08362745.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA143] gi|331681836|ref|ZP_08382469.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H299] gi|83288412|sp|P0ADY2|PPID_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|83288413|sp|P0ADY1|PPID_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|26106850|gb|AAN79035.1|AE016756_218 Peptidyl-prolyl cis-trans isomerase D [Escherichia coli CFT073] gi|1580712|dbj|BAA11645.1| YbaU [Escherichia coli W3110] gi|1773125|gb|AAB40197.1| similar to H. influenzae HI1004 [Escherichia coli] gi|1786645|gb|AAC73544.1| periplasmic folding chaperone, has an inactive PPIase domain [Escherichia coli str. K-12 substr. MG1655] gi|73854493|gb|AAZ87200.1| putative protease maturation protein [Shigella sonnei Ss046] gi|76365131|gb|ABA42059.1| peptidyl-prolyl isomerase [Escherichia coli] gi|81244340|gb|ABB65048.1| putative protease maturation protein [Shigella boydii Sb227] gi|85674581|dbj|BAE76221.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12 substr. W3110] gi|91071089|gb|ABE05970.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89] gi|110342294|gb|ABG68531.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 536] gi|115511825|gb|ABI99899.1| peptidyl-prolyl isomerase [Escherichia coli APEC O1] gi|169756114|gb|ACA78813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli ATCC 8739] gi|169887862|gb|ACB01569.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli str. K-12 substr. DH10B] gi|188491547|gb|EDU66650.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638] gi|190906031|gb|EDV65646.1| peptidylprolyl isomerase [Escherichia coli F11] gi|192958940|gb|EDV89376.1| peptidylprolyl isomerase [Escherichia coli E110019] gi|218364120|emb|CAR01785.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli S88] gi|218425869|emb|CAR06675.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli ED1a] gi|218430822|emb|CAR11696.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli UMN026] gi|222032236|emb|CAP74975.1| Peptidyl-prolyl cis-trans isomerase D [Escherichia coli LF82] gi|226898774|gb|EEH85033.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA] gi|227838634|gb|EEJ49100.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 83972] gi|238861991|gb|ACR63989.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli BW2952] gi|260450372|gb|ACX40794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1] gi|291429415|gb|EFF02435.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412] gi|291471769|gb|EFF14252.1| conserved hypothetical protein [Escherichia coli B354] gi|294490510|gb|ADE89266.1| peptidylprolyl isomerase [Escherichia coli IHE3034] gi|298280287|gb|EFI21791.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302] gi|299880017|gb|EFI88228.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1] gi|300315276|gb|EFJ65060.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1] gi|300355993|gb|EFJ71863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1] gi|300407556|gb|EFJ91094.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1] gi|300414627|gb|EFJ97937.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1] gi|300452506|gb|EFK16126.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1] gi|300843353|gb|EFK71113.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1] gi|301074512|gb|EFK89318.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1] gi|305853854|gb|EFM54293.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli NC101] gi|306907683|gb|EFN38185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W] gi|307552348|gb|ADN45123.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ABU 83972] gi|307628089|gb|ADN72393.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli UM146] gi|308121479|gb|EFO58741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7] gi|309700702|emb|CBI99998.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ETEC H10407] gi|312290768|gb|EFR18645.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75] gi|312945019|gb|ADR25846.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O83:H1 str. NRG 857C] gi|315059721|gb|ADT74048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli W] gi|315135123|dbj|BAJ42282.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1] gi|315289841|gb|EFU49231.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3] gi|315294225|gb|EFU53576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1] gi|315299565|gb|EFU58813.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3] gi|315616618|gb|EFU97235.1| PPIC-type PPIASE domain protein [Escherichia coli 3431] gi|320186071|gb|EFW60816.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella flexneri CDC 796-83] gi|320197085|gb|EFW71704.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli WV_060327] gi|323164242|gb|EFZ50049.1| PPIC-type PPIASE domain protein [Shigella sonnei 53G] gi|323379714|gb|ADX51982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli KO11] gi|323938627|gb|EGB34876.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520] gi|323943248|gb|EGB39404.1| ppic-type ppiase domain-containing protein [Escherichia coli E482] gi|323952947|gb|EGB48815.1| ppic-type ppiase domain-containing protein [Escherichia coli H252] gi|323958634|gb|EGB54337.1| ppic-type ppiase domain-containing protein [Escherichia coli H263] gi|324010072|gb|EGB79291.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2] gi|324010655|gb|EGB79874.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1] gi|324116929|gb|EGC10842.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167] gi|331037759|gb|EGI09979.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H736] gi|331051120|gb|EGI23172.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M718] gi|331054746|gb|EGI26755.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA206] gi|331060244|gb|EGI32208.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA143] gi|331081038|gb|EGI52203.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H299] Length = 623 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|323191361|gb|EFZ76624.1| PPIC-type PPIASE domain protein [Escherichia coli RN587/1] Length = 623 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGLMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300997370|ref|ZP_07181710.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1] gi|300304189|gb|EFJ58709.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1] Length = 623 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWVEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|332341805|gb|AEE55139.1| peptidyl-prolyl cis-trans isomerase PpiD [Escherichia coli UMNK88] Length = 623 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P ++K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|256020413|ref|ZP_05434278.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella sp. D9] gi|332281592|ref|ZP_08394005.1| conserved hypothetical protein [Shigella sp. D9] gi|320201685|gb|EFW76261.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli EC4100B] gi|332103944|gb|EGJ07290.1| conserved hypothetical protein [Shigella sp. D9] Length = 623 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|218693904|ref|YP_002401571.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 55989] gi|218350636|emb|CAU96328.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 55989] Length = 623 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L S G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIS-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|320178277|gb|EFW53251.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella boydii ATCC 9905] Length = 623 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPNYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|85716537|ref|ZP_01047508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp. Nb-311A] gi|85696726|gb|EAQ34613.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp. Nb-311A] Length = 582 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 156/587 (26%), Positives = 289/587 (49%), Gaps = 5/587 (0%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 I + +L V F IWG++D +F G S + +VG ++ F + L I ++ G Sbjct: 1 MTIVMGLLIVAFGIWGIAD-IFQGFGQSALATVGNTEISTEQFRQIYTDRLQQIGRQFGR 59 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + ++ R++G+D++IL +++ A LD+ GLE + +I P F G + F Sbjct: 60 TLPPDQVRALGIDRQILQQVIAEAALDEDARRKGLEVSDKEISRQIMSDPNFKGANGAFD 119 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 F + + G E+ Y+ + R +VG G+ PS LL+ RF E R++D Sbjct: 120 PARFAGLIRQLGYTEQRYVTEQRNLALRRQIVGTVTAGVEPSTKLLEALNRFQNEQRTID 179 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 Y+ L +I P+ A L+ +F+ +K +RAPEY++I++++ E K +S+D+ Sbjct: 180 YVKLGAAQAGSIDPPTEAQLSGYFDAHKVQFRAPEYRKIAFVVLTPEEVAKWTTVSDDDA 239 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + YE+ K+K +PE R + Q++FP+ +A A + + G F +A+E+ + SDI LG Sbjct: 240 KKVYEQRKDKLSTPERRKIWQIIFPSVADAQAAREKIASGASFDDIAKERNLATSDIDLG 299 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + S+ I D ++A++ FSL K D + I G FG + VS I+P ++ V + + Sbjct: 300 TISRPEIVDPAVAEAAFSL-KTDDVSQPIQGKFGVALVKVSKIEPGNQPTYDSVATKLKH 358 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + + + +V + ++E+ G S+ E +++ + ++ + D +G+ GK V I Sbjct: 359 DIAVDRGRAEVNNLHNKMEDERGGGASVVEAAKKVGLSAVTIEATDRSGRAPDGKPVTEI 418 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P L+ + F D + D T+ L + ++W + P+RDR L EV V+ W+ Sbjct: 419 PQGVDLIAQAFASDVGVDND-TLQLGNNGFVWFDVLGVTPSRDRTLAEVKDKVEAGWRKD 477 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 + + + +KA +V + GK + +LG + + + I R D ++ VF Sbjct: 478 QISGRLMTKATDIVRNLEQGGK-IAEESSSLGLKVESASAIKR-DATTGELPAAVVAAVF 535 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 P + + VF+VT+ KV P+ + L + + + Sbjct: 536 RVVKGAAGQAPGADNDEWFVFRVTDVKVPPLDLASDEMKKLREGIQR 582 >gi|293413696|ref|ZP_06656345.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185] gi|291433754|gb|EFF06727.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185] Length = 623 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRARYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKQKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|331645617|ref|ZP_08346721.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M605] gi|331045779|gb|EGI17905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli M605] Length = 623 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + V P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFVLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|170681699|ref|YP_001742585.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli SMS-3-5] gi|218698647|ref|YP_002406276.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli IAI39] gi|300937058|ref|ZP_07151924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1] gi|301022565|ref|ZP_07186437.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|170519417|gb|ACB17595.1| peptidylprolyl isomerase [Escherichia coli SMS-3-5] gi|218368633|emb|CAR16372.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli IAI39] gi|284920251|emb|CBG33310.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 042] gi|300397446|gb|EFJ80984.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|300457889|gb|EFK21382.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1] gi|323170528|gb|EFZ56178.1| PPIC-type PPIASE domain protein [Escherichia coli LT-68] gi|323965128|gb|EGB60587.1| ppic-type ppiase domain-containing protein [Escherichia coli M863] gi|327254769|gb|EGE66385.1| PPIC-type PPIASE domain protein [Escherichia coli STEC_7v] Length = 623 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ D+A +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|209917658|ref|YP_002291742.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli SE11] gi|218553008|ref|YP_002385921.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli IAI1] gi|293418512|ref|ZP_06660947.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088] gi|300818227|ref|ZP_07098438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1] gi|209910917|dbj|BAG75991.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11] gi|218359776|emb|CAQ97317.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli IAI1] gi|291325040|gb|EFE64455.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088] gi|300529118|gb|EFK50180.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1] gi|323184728|gb|EFZ70099.1| PPIC-type PPIASE domain protein [Escherichia coli 1357] gi|323945347|gb|EGB41403.1| ppic-type ppiase domain-containing protein [Escherichia coli H120] gi|324016698|gb|EGB85917.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3] Length = 623 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|323976074|gb|EGB71167.1| ppic-type ppiase domain-containing protein [Escherichia coli TW10509] Length = 623 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ D+A +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P ++K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|24111825|ref|NP_706335.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri 2a str. 301] gi|30061943|ref|NP_836114.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri 2a str. 2457T] gi|24050617|gb|AAN42042.1| putative protease maturation protein [Shigella flexneri 2a str. 301] gi|30040187|gb|AAP15920.1| putative protease maturation protein [Shigella flexneri 2a str. 2457T] gi|281599781|gb|ADA72765.1| putative protease maturation protein [Shigella flexneri 2002017] gi|332760732|gb|EGJ91020.1| PPIC-type PPIASE domain protein [Shigella flexneri 4343-70] gi|332761539|gb|EGJ91821.1| PPIC-type PPIASE domain protein [Shigella flexneri 2747-71] gi|332768363|gb|EGJ98547.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71] gi|333008057|gb|EGK27533.1| PPIC-type PPIASE domain protein [Shigella flexneri K-218] gi|333021934|gb|EGK41182.1| PPIC-type PPIASE domain protein [Shigella flexneri K-304] Length = 623 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 123/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 VAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|323963431|gb|EGB58993.1| ppic-type ppiase domain-containing protein [Escherichia coli H489] Length = 623 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 123/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + ++ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVILLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|331671987|ref|ZP_08372783.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA280] gi|320173739|gb|EFW48922.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella dysenteriae CDC 74-1112] gi|331070976|gb|EGI42335.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA280] Length = 623 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 130/641 (20%), Positives = 272/641 (42%), Gaps = 34/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSG---PVEMVKCFPIENGL--SYVVFKVTNSKVG--PV 584 ++R G D ISQ P + + + + + V+ + K G P Sbjct: 530 KTLSRS-------GRDLISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPE 582 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 583 DQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|157156448|ref|YP_001461628.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli E24377A] gi|157078478|gb|ABV18186.1| peptidylprolyl isomerase [Escherichia coli E24377A] Length = 623 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQASMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|194437396|ref|ZP_03069493.1| peptidylprolyl isomerase [Escherichia coli 101-1] gi|253774568|ref|YP_003037399.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160511|ref|YP_003043619.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli B str. REL606] gi|194423565|gb|EDX39555.1| peptidylprolyl isomerase [Escherichia coli 101-1] gi|242376223|emb|CAQ30914.1| periplasmic folding helper protein [Escherichia coli BL21(DE3)] gi|253325612|gb|ACT30214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972412|gb|ACT38083.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli B str. REL606] gi|253976622|gb|ACT42292.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli BL21(DE3)] gi|323972295|gb|EGB67505.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007] Length = 623 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|281177612|dbj|BAI53942.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15] Length = 623 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300930256|ref|ZP_07145669.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1] gi|300461828|gb|EFK25321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1] Length = 623 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKTLVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|333008127|gb|EGK27602.1| PPIC-type PPIASE domain protein [Shigella flexneri VA-6] Length = 623 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 123/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 VAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNET--ESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|332094597|gb|EGI99643.1| PPIC-type PPIASE domain protein [Shigella boydii 5216-82] Length = 623 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETGELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPNYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|260866602|ref|YP_003233004.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str. 11128] gi|257762958|dbj|BAI34453.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str. 11128] gi|323178290|gb|EFZ63868.1| PPIC-type PPIASE domain protein [Escherichia coli 1180] Length = 623 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 125/640 (19%), Positives = 270/640 (42%), Gaps = 32/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + ++ L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSLYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + KD +E+ P + + + G++ + + DG ++I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585 ++R + F+ P + + + + + V+ + K G P Sbjct: 530 KILSRSGRD------PISQAAFTLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|170749508|ref|YP_001755768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] gi|170656030|gb|ACB25085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] Length = 633 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 297/639 (46%), Gaps = 16/639 (2%) Query: 1 MLEIIRKASRTWVAKI----FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ KI +L I+G+ + F S+ V +VG + Sbjct: 1 MLQGIRNASQHWLGKIVLTIIFTLLIAGVGIFGVEE-FFRGGASNKVATVGSTPITAEQV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++AR +GLD++++ L++ A LDQ D+GL V Sbjct: 60 RQAYQNQLQRYQTQLKRPLTPDQARMLGLDRQVMSQLITEAALDQKTHDLGLAVPDASVI 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I F + +F +F L R G+NE ++ +++R + + Sbjct: 120 KAIHEEKSFQNQQGQFEPQLFYQTLQRAGLNEGLFVREQRSVIARLQLAEAVSSDLHVPL 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E R+ Y++L I DP++ L W+E K +RAPE++ ++ ++ Sbjct: 180 AMREAVHRYTTERRAAAYLMLTPSVAGQIPDPTDDELKTWYEANKSGFRAPEFRSVNLLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KK 295 + K I+ + +A Y NK++Y +PE RT++Q+VFP+ A+ A +++ G K Sbjct: 240 VEPEAMAKPDAITEADARAAYALNKDRYGTPEKRTIQQIVFPDAAAAEAARKAITDGSKT 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F +A E+G D++LG+ +K + D ++AD+ F+L + G + + G FG V+ V+ Sbjct: 300 FDAVAAERGTDEKDLTLGTLTKSELFDKAVADAAFALPEGG-VSQPVQGRFGTVLLRVTK 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+ F+ V+ +I + + +A + ++ +E+ A + +I+ + + + Sbjct: 359 IEAGTVKPFEAVEGEIRKALALARARDAMETTRDAIEDQRAGAKPLADIAAERGLKIVTV 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD GK G+ V IP E L +F + + + G Y+W + A Sbjct: 419 KAVDANGKGPDGQRVTDIPDAETTLPALFRAEIG-GDNEPLRTKTGGYVWYDVTGIDAAH 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 D+ L++V VK W + A+ + +K +LV + +K G+ + +G +L + Sbjct: 478 DKPLDQVKDGVKAGWTATEIAKRLQAKGRELVEKINK-GETMEAAAQEVGVNLQEAQDLA 536 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 R ++ D ++ +F+ PV G S VFKVT + V +T Sbjct: 537 RNQAKD-MLTADVVNLIFATPVGKAGTAAA--GDSRAVFKVTAATVPAFVADSPSDKQIT 593 Query: 596 Q----MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 Q + D+L I+ ++ V V ++R + GE Sbjct: 594 QSFQASLADDVLSQYISEVQKNAGVKVDPAALRRAIGGE 632 >gi|260853664|ref|YP_003227555.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str. 11368] gi|257752313|dbj|BAI23815.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str. 11368] gi|323153478|gb|EFZ39732.1| PPIC-type PPIASE domain protein [Escherichia coli EPECa14] Length = 623 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|300820313|ref|ZP_07100465.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7] gi|331666797|ref|ZP_08367671.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA271] gi|331676113|ref|ZP_08376825.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H591] gi|300527098|gb|EFK48167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7] gi|331066021|gb|EGI37905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli TA271] gi|331076171|gb|EGI47453.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Escherichia coli H591] Length = 623 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ D+A +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEVVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|291281348|ref|YP_003498166.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615] gi|209743820|gb|ACI70217.1| putative protease maturation protein [Escherichia coli] gi|290761221|gb|ADD55182.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615] gi|320661211|gb|EFX28642.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. USDA 5905] Length = 623 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ +LQ+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ D+A +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + K+ +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKENLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDLAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|15800171|ref|NP_286183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O157:H7 EDL933] gi|15829749|ref|NP_308522.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O157:H7 str. Sakai] gi|168747883|ref|ZP_02772905.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113] gi|168754546|ref|ZP_02779553.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401] gi|168760404|ref|ZP_02785411.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501] gi|168768396|ref|ZP_02793403.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486] gi|168777137|ref|ZP_02802144.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196] gi|168778934|ref|ZP_02803941.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076] gi|168786292|ref|ZP_02811299.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869] gi|168798005|ref|ZP_02823012.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508] gi|208809217|ref|ZP_03251554.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206] gi|208815330|ref|ZP_03256509.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045] gi|208823220|ref|ZP_03263538.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042] gi|209395856|ref|YP_002269088.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115] gi|217325591|ref|ZP_03441675.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588] gi|254791625|ref|YP_003076462.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. TW14359] gi|261223924|ref|ZP_05938205.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. FRIK2000] gi|261256362|ref|ZP_05948895.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. FRIK966] gi|12513303|gb|AAG54791.1|AE005223_6 putative protease maturation protein [Escherichia coli O157:H7 str. EDL933] gi|13359952|dbj|BAB33918.1| putative protease maturation protein [Escherichia coli O157:H7 str. Sakai] gi|187767557|gb|EDU31401.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196] gi|188017729|gb|EDU55851.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113] gi|189002976|gb|EDU71962.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076] gi|189357979|gb|EDU76398.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401] gi|189362425|gb|EDU80844.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486] gi|189369155|gb|EDU87571.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501] gi|189373538|gb|EDU91954.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869] gi|189379237|gb|EDU97653.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508] gi|208729018|gb|EDZ78619.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206] gi|208731978|gb|EDZ80666.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045] gi|208737413|gb|EDZ85097.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042] gi|209157256|gb|ACI34689.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115] gi|209743814|gb|ACI70214.1| putative protease maturation protein [Escherichia coli] gi|209743816|gb|ACI70215.1| putative protease maturation protein [Escherichia coli] gi|209743818|gb|ACI70216.1| putative protease maturation protein [Escherichia coli] gi|209743822|gb|ACI70218.1| putative protease maturation protein [Escherichia coli] gi|217321812|gb|EEC30236.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588] gi|254591025|gb|ACT70386.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7 str. TW14359] gi|320192857|gb|EFW67497.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7 str. EC1212] gi|320638436|gb|EFX08150.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. G5101] gi|320643817|gb|EFX12940.1| periplasmic folding chaperone [Escherichia coli O157:H- str. 493-89] gi|320649168|gb|EFX17746.1| periplasmic folding chaperone [Escherichia coli O157:H- str. H 2687] gi|320656061|gb|EFX23977.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665187|gb|EFX32280.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. LSU-61] gi|326341205|gb|EGD64997.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7 str. 1044] gi|326346020|gb|EGD69759.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7 str. 1125] Length = 623 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ +LQ+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ D+A +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + K+ +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKENLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|193064188|ref|ZP_03045272.1| peptidylprolyl isomerase [Escherichia coli E22] gi|194428997|ref|ZP_03061529.1| peptidylprolyl isomerase [Escherichia coli B171] gi|260842642|ref|YP_003220420.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str. 12009] gi|192929217|gb|EDV82827.1| peptidylprolyl isomerase [Escherichia coli E22] gi|194412934|gb|EDX29224.1| peptidylprolyl isomerase [Escherichia coli B171] gi|257757789|dbj|BAI29286.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str. 12009] gi|323160448|gb|EFZ46396.1| PPIC-type PPIASE domain protein [Escherichia coli E128010] Length = 623 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L +G F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNEGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|110804469|ref|YP_687989.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 5 str. 8401] gi|110614017|gb|ABF02684.1| putative protease maturation protein [Shigella flexneri 5 str. 8401] Length = 623 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 123/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-IDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 VAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KILSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|170767918|ref|ZP_02902371.1| peptidylprolyl isomerase [Escherichia albertii TW07627] gi|170123406|gb|EDS92337.1| peptidylprolyl isomerase [Escherichia albertii TW07627] Length = 623 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 271/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDRYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + S L + G++ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNSILNQMGMSADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQAVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y++++E++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQEQFTQPQRMRYSIIQTKTEDEAKAVLAELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G +PD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATVPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDVQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L++E K GK + + Sbjct: 472 KPETVKPLADVQEQVKAMVQHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-QAAALKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 +NR + + P + + + + + V+ + K G P ++K Sbjct: 530 KTLNRSGQD----PISQAAFALPLPTQDKPSYGMATDMQGNVVLLALDEVKQGSMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|330910235|gb|EGH38745.1| peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli AA86] Length = 623 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLAGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLAGENGAPGINSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + V P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFVLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|90419613|ref|ZP_01227523.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas manganoxydans SI85-9A1] gi|90336550|gb|EAS50291.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas manganoxydans SI85-9A1] Length = 629 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 173/629 (27%), Positives = 305/629 (48%), Gaps = 8/629 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R + W AKI L +L + F +WG+ D +F ++ V++ G +V + ++ Sbjct: 1 MLNTLRGSISGWTAKILLGLLVLSFAVWGIGD-VFRGGVANAVLTAGETEVSLQDYALAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++Q+IG +E A G+ + ++ LV+GA LD+ I L R+ IA Sbjct: 60 NRAQSRLAQQIGRRPTAEEAEMFGVGQSVISQLVAGAVLDEQGRRIDLGLSQDRLAQVIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F FS F + L I+E +YI R+ +V G+ + Sbjct: 120 EDPTFQDASGNFSRAQFQNALYNARISETDYIRGQENQAVRSQIVDAVSEGIAIPDAFST 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R+++Y+ L +P +ADPS+ VLT +F++ + Y APEY+ ++Y + Sbjct: 180 ALGLYNGERRTIEYVTLTPATIPPVADPSDEVLTTYFQENIETYAAPEYRSVAYAVLTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 I+++ + A+YE+ KE+Y + E R V+Q+ FP++ A L+ G F +A Sbjct: 240 AMADPTTITDEAVAADYEQYKERYTTAEQRRVQQIAFPDEAAAQAGKAKLEAGTSFADVA 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E G+S +DI LG ++ IPD ++A++ FSLA+ GD + V+ G+FG V+ V+ I+P Sbjct: 300 SEAGRSPTDIDLGLVTRSQIPDATVAEAAFSLAE-GDVSDVVSGAFGPVLLQVTEIQPET 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + +EV +I + + + AS+ Y E+ A G + E ++ + +P VD Sbjct: 359 VQTLEEVSDEIRSALALVAASDTANSAYNAFEDARAGGATFAEGAQSAGLTVQTIPAVDR 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G G+ VA P ++ L VF + L + + Y++ + PARDR L+ Sbjct: 419 EGNGPDGQPVAEQPSAQEFLPGVFETEPGLD-NVPINFQSNGYVFYDVISIDPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DWK +T +++ +A Q+ E + G++ D GA T ++R Sbjct: 478 EVRDRVLADWKAAETDRQLAERAEQMKTEL-QAGRSMADAAAAAGAEARTAAAVSRQSGV 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI---SYLTQM 597 ++ G G++ FSG V S +V +V + S +T M Sbjct: 537 SE-LGQAGVNAAFSGGTGTVATAAGREAGSQIVLRVVEVAPPADPAANVAANERSQMTGM 595 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + D+L++ ++ L++ ++ VH I+R Sbjct: 596 LENDILETYVSLLQNDTAIAVHPAGIERA 624 >gi|313646932|gb|EFS11389.1| PPIC-type PPIASE domain protein [Shigella flexneri 2a str. 2457T] gi|332763740|gb|EGJ93978.1| PPIC-type PPIASE domain protein [Shigella flexneri K-671] Length = 622 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 122/637 (19%), Positives = 267/637 (41%), Gaps = 28/637 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFN 59 Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I +P F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 IFATPAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLV 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 AATM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAA 296 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 LAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLD 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVK 411 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472 + KD +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 ATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEHK 471 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 PEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPK 529 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKD 588 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 TLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKK 585 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 AMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622 >gi|193084249|gb|ACF09911.1| peptidyl-prolyl cis-trans isomerase ppiD [uncultured marine group III euryarchaeote KM3-28-E8] Length = 631 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 154/632 (24%), Positives = 298/632 (47%), Gaps = 9/632 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +R RTW K L +L + F IWG+ D +TVV VG ++ F ++ Sbjct: 1 MLEFLRNGVRTWYFKALLGLLVLSFAIWGVGDIFRPGLSGNTVVKVGNIEIGSQQFTSAL 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +S+ +G E+AR + + +++++ LV+ A + +G+ + I Sbjct: 61 QRQMQNLSRTLGSNFTLEQARGLQVPERVVEGLVTEALHESEANALGIAVGKKALVQRIR 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ +F V+ LA G +E++++ + LSR V+G + S +L + Sbjct: 121 SEPGFRNQEGQFDRSVYEQTLAINGFSEEQFVSRLRQELSRAQVLGSLTSEVPVSEVLTN 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + E R YI + + + I P +A L ++++ + + APEY+ +Y+ Sbjct: 181 RLYSWNAEKRVAAYIKIQHDAIANIEKPDDAALQEYYKGNESLFTAPEYRSATYVHLTGK 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + E I++S+ ++Q Y++N + + PE RTV+Q++F ++EA L +GK F +A Sbjct: 241 DVESDIDVSDADIQKLYDQNIDAFKVPERRTVQQMIFSTEEEAKTGAAHLAEGKTFAAVA 300 Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++ + D + LG +K ++PD +LA+++F+L+ G TP + G FG+ + V+ IK Sbjct: 301 KDLLRQDEDATNILGDVTKIHLPD-TLAEAVFNLS-DGQVTPPLEGPFGWYVMRVTAIKA 358 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T EV+ DI Q+ ++ E + + L++ L G S++E +R+ +V+ + V Sbjct: 359 PKTQQLLEVRIDIRAQLVQERSGEALYKLSNDLDDALGGGASLEEAARQVGVVAKKVTKV 418 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D K + +P + L +F D + V L Y+ ++ A+ + Sbjct: 419 DRGSNGSDEKPMNDLPPGPEFLTTLFNTPDG-QESELVDLGVNGYLILRNTGIQAAKVKP 477 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR-M 537 LE V K WK + ++ + ++ LE K G+ I K++ + T+ NR Sbjct: 478 LESVRNRAIKFWKAEQRRKQTEENSKRI-LERIKGGEPLEVISKSIDVPIETSPPFNRHG 536 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGP-VQEKDKFISYLT 595 + +++F V P + G + V K + +KVG + L Sbjct: 537 EGAANNLPRSLAAELFGVKVGGASSAPSDRGYTIGVLKEIVKAKVGANSADVKALAEQLA 596 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 Q + +DL L+ ++V + + L Sbjct: 597 QRIGRDLEIQYNNALRQHHNVEIDQRALDNLL 628 >gi|283834240|ref|ZP_06353981.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC 29220] gi|291069758|gb|EFE07867.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC 29220] Length = 624 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 128/638 (20%), Positives = 270/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFTTPSFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A ++ +T ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAAAMQE--TASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + +G + PD L +KG + VI S G+++A + Sbjct: 297 ALAKEKSADIISARKGGDMGWLEESTTPD---ELKNAGLKEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ E + DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDVQPAQVKPLSEARDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGM 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D KE+ P + + + G++ + + DG +V +I E Sbjct: 412 KAVETGWFSRDSLPKELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ A++L+ + K GK D K G S Sbjct: 472 KAEAVKPLAEVKEQVTALVKHNKAVQQAKLDADKLLADL-KAGKG-DDAMKAAGLSFGEA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + G+ S P + + + N + + V+ + K G P +K Sbjct: 530 KTLSRTGQDPLSQAAFGL----SLPAQDKPSYGVANDMQGNVVLLALEEVKAGSMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + V D L Q+ Sbjct: 586 KAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623 >gi|307942204|ref|ZP_07657555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp. TrichSKD4] gi|307774490|gb|EFO33700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp. TrichSKD4] Length = 635 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 169/632 (26%), Positives = 305/632 (48%), Gaps = 10/632 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + TWVAKIF+ +L F +WG++D +FS G +TV VG ++ +F ++ Sbjct: 1 MLDALRKGAGTWVAKIFIALLVFSFAVWGVAD-VFSGFGQNTVAKVGETEIATVAFDRAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L +++G +++ G+ ++ L +++ A L++ ++ L + G I Sbjct: 60 RQDLNRFGRQLGRPLSTTEGAQFGIPQQTLGRMIAEAALNETGRELNLGISDDHLAGIIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + + L G++E EY+ + R + G M L+ Sbjct: 120 NDPNFRRAGGGYDRALLAQVLRNIGMSEDEYVIQQREFAERQQIAQAVSGDMPAPTAYLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + IVL V I DP A L +FE+ K +RAPEY++++ + Sbjct: 180 VLNAYENETRDISLIVLTAEQVGEIEDPDQAALEAYFEENKVAFRAPEYRKVTLLELTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+D EYE++K +YF E R Q+VF + EA EA Q L G F +L Sbjct: 240 ALARPEDISDDMALDEYERDKSRYFEAEKRRARQIVFQDPAEAAEASQRLSDGTTFEELM 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ S +D++LG ++E D ++ ++ FSL+ G + + G F I +V I+P Sbjct: 300 AERNLSDNDVNLGLMAQEDFLDTAVGEAAFSLS-VGGTSEPVDGRFSTAIVNVLEIQPEA 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F +VK DI + +A +V + +E+ A G + E++ R ++ + D Sbjct: 359 TQPFDDVKADIKALLAAEQAEREVLDLLDEIEDARAGGDLLAEVAERLQLTTTMPDAFDH 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AGK + V ++P +L+ VF D + D V L + ++W ++ E IPAR+R L+ Sbjct: 419 AGKGLDENSV-SLPDAVELISGVFSSDVGVEND-PVQLGNRGFLWYEVSEVIPARERTLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + A+ + + A+ E K G+ + + + G ++ T + + R Sbjct: 477 EVTQKVIDAWKEAELAKRLENMADD-YAERVKNGETMQALAETAGLTVQTNDGVKRT-AT 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQ 596 + +G++Q+F+GP +V + + VV KV + +++ I L Sbjct: 535 SLAVSRNGLTQLFAGPEGLVAAVEAADSAARVVAKVNKVNIPAFFAEEQGIQALGMQLAN 594 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 M LL ++ ++ + V ++D + L Sbjct: 595 QMQDSLLSQYVSGIEERAGVEINDGAVALVLG 626 >gi|333010902|gb|EGK30328.1| PPIC-type PPIASE domain protein [Shigella flexneri K-272] gi|333020704|gb|EGK39964.1| PPIC-type PPIASE domain protein [Shigella flexneri K-227] Length = 623 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 266/638 (41%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F D KF + + L + G+ +Y L+ ++ G Sbjct: 120 AIFATSAFQ-VDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ E R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPATEQEIASYYEQNKNNFMTSEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + +S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 VAAMM--QQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G IPD L +KG + VI S G++I + Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ S EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + KD +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L +V VK + K ++ A +L+++ K GK + + G Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + P + + + + + V+ + K G P +K Sbjct: 530 KTLSRSGRD----PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|324114668|gb|EGC08636.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii B253] Length = 622 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 123/637 (19%), Positives = 272/637 (42%), Gaps = 28/637 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFN 59 Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E + Q++G + + L +++L+ L+ A LDQ+ D+ L +V Sbjct: 60 SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I +P F D KF + + + L + G++ +Y L+ ++ G Sbjct: 120 IFATPAFQ-VDGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGE 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 D+ + R V ++ S+A +T +++++K+N+ PE R+SYI+ D Sbjct: 179 TDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLD 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +S+ ++QA Y+++++++ P+ + + EA +L G F + Sbjct: 239 AANI--QQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAE 296 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ + + LG P L D+ L KG + VI S G+++ + Sbjct: 297 LAKEKSADIISARNGGDLGWLEDSTTP-QELKDA--GLKDKGQLSGVIKSSVGFLVVRLD 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +++P+ + EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DVQPAKVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVK 411 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472 + + +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 AKETGWFSQQNLPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEHK 471 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 + L EV VK + K ++ +A +L++E K GK D + G Sbjct: 472 AEAIKPLSEVKDQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGV-DAMRAAGLQFGEQK 529 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKD 588 ++R + + P + + + + V+ + K G P +K Sbjct: 530 TLSRSGQD----PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLALDEVKAGTMPEAQKQ 585 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 ALVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622 >gi|217976694|ref|YP_002360841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella silvestris BL2] gi|217502070|gb|ACK49479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella silvestris BL2] Length = 636 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 164/638 (25%), Positives = 304/638 (47%), Gaps = 16/638 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ +R A++ W+ + I L + + F +WG+ D +F G++ + VG +++ +F Sbjct: 1 MLDAMRAATKGWIGRTVMGIVLGFIILSFAVWGIGD-IFRGFGANKLAEVGNEQITTEAF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ EL ++ + ++ A+ GLD+++L LVS A LDQ +GL + Sbjct: 60 RFAYQTELQRAQRQARRAITNDEAKRFGLDRQVLSRLVSEAVLDQETHALGLAMSDAEIA 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 IA P F G +F F L G+ EK ++ + R +++ G++ Sbjct: 120 RTIAADPSFKGASGQFDRARFEELLRDNGLTEKAFVREQRGVYLRQELIDSMTNGLQLPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L+ R+ E R++DY VL IA PS+ L ++FE K Y APEY+ + + Sbjct: 180 AMLELIHRYQTETRTLDYFVLPAAAAGTIALPSDDELGKYFEDRKLGYSAPEYRTLVTLT 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 K +S+ + Y++ K EKY +PE R ++QL F + A A + L G Sbjct: 240 LTPESIAKPDAVSDADALRRYDEIKGEKYGAPEKRQIDQLFFSDPAAAAAAREKLDAGAS 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F + +QG ++ D+SLG ++ + D ++AD F+L + + + FG V+ V+ Sbjct: 300 FEDIVAQQGSTMKDVSLGLVTRGQLIDKAVADVAFALPES-AVSAPVKTQFGSVLIRVAA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+PS F++VK++I ++ T+A ++ + +E+ A G ++ E ++ + + Sbjct: 359 IEPSSAKPFEDVKEEIKREIATTRARGEIARLHDAIEDQRASGKTLTEAAKSAGLEVRVI 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 P VD GKD G +A + LL F D + + T++LP G Y W ++ + AR Sbjct: 419 PAVDAGGKDAAGVPIADLANSAALLKAGFASDLGVD-NETLSLPQGGYQWFEVGKIDRAR 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + EE V+K W+ +TA+ +++K L + + G+ + G + + Sbjct: 478 QKSFEEAKPAVEKAWRDDETAKLMTAKTIDL-TKRLESGEPMAKVAAEGGFEVKRAQNVR 536 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 R +N F ++Q F+ V V +E G +VFKV + P+ D + L Sbjct: 537 RGGGDN--FPQPAVAQAFNVGVGGVGSTRLEAGD-RLVFKVAGATAPPIDFADATLVSLA 593 Query: 596 QMM----NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + + DL+ + L+++ V ++ + G Sbjct: 594 NEVKKSYSDDLVTQYLGTLQNKLGVKINAQALAAATSG 631 >gi|237730418|ref|ZP_04560899.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2] gi|226905957|gb|EEH91875.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2] Length = 624 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNFAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ LV A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLVDEALLDQYSRELKLNISDDQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI Sbjct: 179 ETDELAALVAQQRIVREATIDVNALAAKQSVTEQEVASYYEQNKNNFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S+ ++Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAAAMQE--TASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + +G PD L +KG + VI S G+++A + Sbjct: 297 ALAKEKSADIISARKGGDMGWLEDSTTPD---ELKNAGLKEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ E + +IA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDVQPAQVKPLSEARDEIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGM 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KAVETGWFSRDSLPEELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ A++L+ + K GK + K G S Sbjct: 472 KAEAVKPLAEVKEQVTALVKHNKAEQQAKLDADKLLADL-KAGKG-DEAMKAAGLSFGEA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + G+ S P + + + N + + V+ + K G P +K Sbjct: 530 KTLSRTGQDPLSQAAFGL----SLPAKDKPSYGVANDMQGNVVLLALDEVKAGSMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKAAKIKIGDALEQQ 623 >gi|157146942|ref|YP_001454261.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Citrobacter koseri ATCC BAA-895] gi|157084147|gb|ABV13825.1| hypothetical protein CKO_02719 [Citrobacter koseri ATCC BAA-895] Length = 623 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 122/636 (19%), Positives = 274/636 (43%), Gaps = 24/636 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L S + V Q++ S F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGSN-NYAAKVNDQEISRSQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYAHELKLSISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFSTAAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLIAGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A ++ ++ ++E+ K+ + PE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQQATDQEVSSYYEQNKNRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ +++ ++Q+ Y+++++++ P+ + + EA +L KG F Sbjct: 239 DAAAMQE--TVNDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEDEAKAVLDALNKGGDFA 296 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA+E+ + G ++ D + D + L +KG + VI S G+++A + + Sbjct: 297 ALAKEKSADIISARNGG-DMGWLEDATTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDD 355 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 ++P+ E + DIA +++ KA + +++ + A + ++ E+ + Sbjct: 356 VQPAKVKPLSEARDDIAAKVKQEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKA 413 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIP 473 + D +E+ P + + + G++ + + DG +V +I E P Sbjct: 414 VETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRISEHKP 473 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L +V V K K ++ A++L++E K GK + K G S Sbjct: 474 EAVKPLADVKEQVAALVKHNKAEQQAKLDADKLLVEL-KAGKGAEAM-KAAGLSFGEAKT 531 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDK 589 ++R + + P + + + N + + V+ + + K G P ++K Sbjct: 532 LSRTGQD----PVSQAAFALGLPEKDKPSYGVANDMQGNVVLLALDDVKAGSMPEEQKKA 587 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + V D L Q+ Sbjct: 588 MVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623 >gi|239832027|ref|ZP_04680356.1| rotamase family protein [Ochrobactrum intermedium LMG 3301] gi|239824294|gb|EEQ95862.1| rotamase family protein [Ochrobactrum intermedium LMG 3301] Length = 628 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 174/631 (27%), Positives = 313/631 (49%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++WVAK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + Sbjct: 61 EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+D+ K+ R +V G++ + L Sbjct: 121 EDPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPDAALK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E RSVDY+ + A+ PS+ L +FE KD Y+APEY++++Y+ + Sbjct: 181 ALALYQGETRSVDYVTIQAEKADAVPAPSDDALKTYFEARKDEYKAPEYRKVTYVKLEPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK+++ + E R +EQL F + A+ A Q + G F+ + Sbjct: 241 DIADPSAVTQDEISEYYEKNKDRFGTIEKRAIEQLNFADDAAAEAAQQKIAAGTSFVDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ D+ LG+F K IPD ++AD+ F+LA+ G +PV+ GSFG VI V+ I+P+ Sbjct: 301 KEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGSFGPVILRVTQIEPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I + A+ + + E+ + G SM +++++ + ++ + VD Sbjct: 360 VKPLAEVEGEIRTTLANNIAASSISGIHDSYEQERSDGASMADVAKKLSLKTVTVEAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D G V +P E LL F D D + + + Y+W Q+ PARDR L+ Sbjct: 420 GGNDPSGNPVQ-LPNSEALLAAAFQADQGFDND-ALTMGNVGYLWYQVDGITPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + +L G I LG T + R N+ Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRVEELKKRLD-GGATLDTIASELGVEKQTKRGVVRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G + + ++FKVT GP ++ Y Sbjct: 537 ADI-GTAAAAQIFRGANGFTGSAAAPSDDAQILFKVTEVTEPAAAGPEAIPEQQQKYQAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 ++ D+L+ ++ L+ QY V ++ +I L Sbjct: 596 SLSDDILEQLVGELQKQYPVKINQTVINNAL 626 >gi|298291797|ref|YP_003693736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM 506] gi|296928308|gb|ADH89117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM 506] Length = 629 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 167/631 (26%), Positives = 294/631 (46%), Gaps = 6/631 (0%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +RK++ VAKI + +L V F IWG++D +F GS T+ ++G ++ F + Sbjct: 1 MLETLRKSASGIVAKILMGLLIVSFGIWGIAD-VFRGFGSQTLATIGDTEITVPEFRQLY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q L +SQ++ + E+AR+ G+ ++L ++ A L+ + +GL + + Sbjct: 60 QQRLQQVSQQLKRGITPEQARAFGIPDQLLQEQLAEAALNDQAKSLGLALSDAEIARRVQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G F + F L G E +++ + R ++ GG+ +L D Sbjct: 120 SNPSFFGPGGSFDPNYFNQLLRSNGFTEARFVEAERGLAVRQQLIQSLGGGVTVPQVLKD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R+ E RSV+Y +L +PA+A+PS+ L ++F++ K +RAPEY+++S ++ Sbjct: 180 ALARYESEERSVNYAMLTAHALPALAEPSDEELRKFFDERKIAFRAPEYRKVSVLVLTPE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 IS+ +++A Y+ N Y +PE R V+Q+VFPN++EA A + G F + Sbjct: 240 ALANSESISDADVEAAYKANLASYGTPEKRVVQQIVFPNEQEAAAAAARITAGTPFADII 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ D+ LG ++ I D ++AD+ + V+ G FG VI HV + P Sbjct: 300 AERKLEAKDVELGDVTRADIFDKAVADAA-FALAPDATSGVVAGRFGPVIVHVGTVTPGT 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T EV I Q+++ A V Y ++E+ A G + EI+ + I + Sbjct: 359 TKPLTEVAGQIRTQLQLDTARRAVLTKYDQIEDERAGGAMLAEIASKAGIPVQSFD-TNI 417 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G+ G + +IP + ++L F D D +G Y+W + RDR E Sbjct: 418 QGQTPDGSSIPSIPGRAEVLRGAFAADVGSDNDPVQLPQNGGYVWFAVDGITAPRDRTFE 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 E V WK +TA+ + K + + + G+ F + G L N + R Sbjct: 478 EARAQVLDRWKQDQTAQALDKKVEDIKAKVA-GGEAFDKAVTDAGLELRAANGLRRGRAA 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMN 599 + D + VF P V E G S ++F+V V P + +K +S + Q + Sbjct: 537 DGV-PQDILEAVFETPQGQVGSSLAEGGESRLLFQVLRVSVPPAATQDEKLLSDVRQSLE 595 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 DL+ + L+ Q ++ + + + + Sbjct: 596 NDLMTEYVVELQGQLGPRINRAALDQIVGTD 626 >gi|261341042|ref|ZP_05968900.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus ATCC 35316] gi|288316907|gb|EFC55845.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus ATCC 35316] Length = 624 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 120/634 (18%), Positives = 263/634 (41%), Gaps = 20/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L ++ L+ L+ A LDQ+ +++GL +V Sbjct: 60 AGERNRMQQQLGDQFSELAANEGYMNNLRQQTLNRLIDEALLDQYAKNLGLGISDEQVKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F + KF + + S + + G+ +Y L+ ++ VG Sbjct: 120 AIFSTQAFQS-NGKFDNTRYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A S+A + W+E+ K+++ APE R+SYI Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + S+ ++Q+ Y+++++++ P+ + + +A L KG F Sbjct: 239 DAAALQGNA--SDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + + + +G PD L KG + VI S G+++A + Sbjct: 297 TLAKAKSTDIISAKNGGDMGWLEAATTPD---ELKNAGLKDKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++ + T EV+ +IA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDVQAAKTKPLAEVRDEIAAKVKQEKALDAFYALQQKVSD--AASNDNESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + G D +E+ P + + + G++ + + DG +V ++ + Sbjct: 412 KAVETGWFGHDNLPEELNFKPVSDAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRVTDH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ A +L+ K GK + K G S Sbjct: 472 KAEAVKPLAEVKDQVIAQVKHSKAEQQAKLDAEKLLAAL-KAGKGDEAL-KAAGLSFGEA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 ++R + +SQ G ++ + + + P +K + Sbjct: 530 KTLSRTGQDPVSQAAFSLSQPAKGKPGYGTATDMQGNVVLLALDEVKAGTLPDAQKKAMV 589 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +TQ + +++++ L+ + + + D + Q+ Sbjct: 590 QGITQNNAQITFEAMMSNLRKEAKIKLGDVITQQ 623 >gi|328543803|ref|YP_004303912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [polymorphum gilvum SL003B-26A1] gi|326413547|gb|ADZ70610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polymorphum gilvum SL003B-26A1] Length = 630 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 158/632 (25%), Positives = 300/632 (47%), Gaps = 11/632 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + T+VAKIF+ +L + F +WG++D +F G + VG ++ SF ++ Sbjct: 1 MLDALRKGAGTFVAKIFIALLILSFAVWGIAD-IFQGFGRNVAARVGDTEISLQSFDQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++EL +S++IG +++ +GL +++L LV+ A LD + L + I Sbjct: 60 RRELSALSRQIGRPLSTTEGAQIGLPQQVLGRLVAEAALDDDARAMTLGISDAELIRVIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F F L GI+E +Y+ ++ R + G + +LL+ Sbjct: 120 ADPVFQRPGGGFDRARLAQLLRANGISEDDYVVERRRLAERQQIAEALSGSLISPQVLLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R+V Y++L V +IA+P +A L +F+ + +RAPEY+R++ + Sbjct: 180 AFNAYQNETRTVRYLLLTPAAVGSIAEPDDAALEAYFDDNRAAFRAPEYRRLALLELTPD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + E+++ + ++ YE+ ++ E R V Q+ FP+ A A + L G F +L Sbjct: 240 AVARPDEVTDADARSAYERAGSRFSEDERRRVRQMPFPDADAARAAAERLASGASFAELM 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E+ + +D+ LG K D ++A++ F+L + G + + G F VI + I+P+ Sbjct: 300 AERNLAEADVDLGLMRKSDFLDPAIAEAAFALDE-GAVSGAVEGRFATVILEAAEIRPAA 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T F+EV+ ++ ++ +A +V + + +E+ A G ++ EI+ R K+ P +D Sbjct: 359 TRPFEEVRDELKQEIARERAEREVLDIHDEIEDARAGGAALAEIAERFKLALATPPALDA 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 GK G V ++P + LL F D + D + L + ++W ++ E IPARDR L+ Sbjct: 419 TGKAETGATV-SLPDGDGLLREAFDSDVGIEND-PLPLGERGFVWYEVAEVIPARDRPLD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V W + + ++ + + K G++ + +LG + T+ + R + Sbjct: 477 EVRPSVVIAWGAAERIKRLADL-SAGTADRLKAGESLDVVAADLGLEVKTSAPLKR-ATD 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596 + F FSGP V ++G + +V V E + + Sbjct: 535 SGDFTAAAAGSAFSGPAGTVAEAAGKDG-NRIVMMVDAISSPAFFMEADEVKAIDEQVAR 593 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + LL+ ++ ++ V V+ I + L Sbjct: 594 QLQDSLLNQYVSEIERTRGVEVNQAAIAQVLG 625 >gi|49475360|ref|YP_033401.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae str. Houston-1] gi|49238166|emb|CAF27375.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae str. Houston-1] Length = 629 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 155/634 (24%), Positives = 308/634 (48%), Gaps = 16/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+IIR A+ +W+A+IFL +L + F++ WG+ ++S G + + + Sbjct: 1 MLDIIRNATNSWIARIFLAILLLCFILLWGIPQ--LHTKSERDLISSGESIITIDDYRLA 58 Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ ++G + + + + + L D+ + + + Sbjct: 59 LADQSARLALASRLGRMFTPNEMQQYQIPAFVFNQLQQDVLFDEQTRQMKINLSKDAIAR 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I +F + F HD+F + L + I+E ++D+YTK R ++ + GM+ +L Sbjct: 119 KIGADNMFQ-INGVFKHDLFRNYLQQLHISESNFLDYYTKKEKRNQLISASLSGMKAPDL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R DY+VL+ + I++P L +WFE +++ +R PEY+ IS++ Sbjct: 178 FYKALAFYQRETRIADYLVLDLKEKEIISEPHQETLQKWFETHRNKFRVPEYRTISFLSM 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++ + K +IS DE++ Y +N ++ +PE RT+E+L FP ++ AD A + + G F Sbjct: 238 ELADFIKPKDISEDEVKNYYTQNSSRFITPEKRTIEELRFPTREAADNAVKKIADGLSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L + + K+L+DI G F++ +P L+ IF L K+G + VI+ G VI V++I Sbjct: 298 DLVKAENKTLNDIKKGPFTENELP-SYLSSEIFEL-KQGQISAVINDLQGPVIIRVTDIT 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P+ + F++V+ +I + +A++ ++ Y +E G S E++ + K+ + Sbjct: 356 PAGPIPFEKVEDNIRQTLAQNRAADDIRNSYTEIENARFEGASFKELADQYKLPLRTI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK ++G + +P K+ LL ++ ++ D ++LP+G Y+W +I IPARD+ Sbjct: 415 LDKTGKTIEGTILTDLPQKDLLLNSIYQSNEGADLD-PLSLPNGGYLWYKINTIIPARDK 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 EE +V WK + + KA L+ EGK+ + LG + TT + R Sbjct: 474 TFEEAKQEVIAQWKKEEIQRLLDEKAKD-ALKQLTEGKSLVSLAHILGVTKQTTQPLRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593 D+ ++ G++G+ +FSGP + +++++ P S Sbjct: 533 DS-SEILGFEGVKALFSGPKGHYGIVKGPIAKNRILYQIKEVTTPKDISPHTLSSDIRSN 591 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + M+ +DL ++ ++ + ++ + Sbjct: 592 IDMMIREDLKLEMLHVANKEHPLKINSANYNQIF 625 >gi|146310569|ref|YP_001175643.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter sp. 638] gi|145317445|gb|ABP59592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp. 638] Length = 624 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 121/636 (19%), Positives = 270/636 (42%), Gaps = 24/636 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ + F++ G+S L S S+ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIILSFILTGVSGYLIGGS-SNYAAEVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L ++ ++ L+ A LDQ+ + +GL +V Sbjct: 60 AGERNRMQQQLGDQFSELAANEGYMKTLRQQTVNRLIDEALLDQYAKRLGLGISDDQVKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F + KF + + + + + G+ +Y L+ ++ VG Sbjct: 120 AIFSTQAFQ-TNGKFDNTRYNAIVNQMGMTADQYAQALRNQLTSQQLINAVVGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A S+ + ++E+ K+N+ APE R+SYI Sbjct: 179 ETDELAALVSQQRVVRAATIDVNALAAKQQASDEEVKAYYEQNKNNFTAPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + S+ ++Q+ Y+++++++ + + + +A L KG F Sbjct: 239 DAATMPE--TASDSDIQSYYDQHQDQFTQAQRNRYSVIQTKTEADAKAVVDELAKGADFA 296 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A+ + + G ++ D + + + L +KG + VI S G+++ + + Sbjct: 297 TVAKAKSTDIISAKNGG-DMGWLEDATTPEELKNAGLKEKGQLSGVIKSSVGFLVVRLDD 355 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+P+ T EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 356 IQPAKTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGVKA 413 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIP 473 + + G D +E+ P + + + G + + + DG +V ++ E Sbjct: 414 VVTGWFGHDNLPEELNFKPVSDAIFNGGLLGDNGTPGNNSDIITVDGDRAFVLRVTEHKA 473 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + LE+V + K K ++ A +L+ E K GK K G S Sbjct: 474 EAIKPLEDVKDQIATLVKHTKAEQQAKLDAEKLLAEL-KAGKG-DAALKAAGLSFGEAKT 531 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDK 589 ++R + G+ S P + + + + + VV + K G P ++K Sbjct: 532 LSRTGQDPISQAAFGL----SLPAKDKPSYGTASDMQGNIVVLALDEVKAGTMPDEQKKA 587 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + + D + Q+ Sbjct: 588 MVQGITQNNAQIAFEALMSNLRKEAKIKLGDIITQQ 623 >gi|153009380|ref|YP_001370595.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561268|gb|ABS14766.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188] Length = 628 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 177/631 (28%), Positives = 313/631 (49%), Gaps = 9/631 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R A+++WVAK+ L +L + F IWG+SD + ++ G +V + + ++ Sbjct: 1 MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + Sbjct: 61 EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH F+ F + L + GI ++Y+D+ K+ R +V G++ N L Sbjct: 121 EDPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPNTALK 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E RSVDY+ + A+ PS L +F+ +KD Y+APEY++I+Y+ + Sbjct: 181 ALALYQGETRSVDYVTIQAEKADAVPAPSEDALKTYFDAHKDEYKAPEYRKITYVKLEPT 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ DE+ YEKNK+++ + E RT+EQL F + A+ A Q + G FI + Sbjct: 241 DIADPSAVTQDEINEYYEKNKDRFSTIEKRTIEQLNFADDAAAEAAQQKIAAGTSFIDIG 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +EQGK+ D+ LG+F K IPD ++AD+ F+LA+ G +PV+ G FG VI V+ I+P+ Sbjct: 301 KEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGGFGPVILRVTQIEPAH 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ +I + A+ + + E+ + G SM +++++ + S+ + VD Sbjct: 360 VKPQAEVEGEIRTTLANNIAASSISGIHDSYEQDRSDGASMADVAKKLSLKSVIVEAVDA 419 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G D G V +P E LL F D D + + + Y+W Q+ PARDR L+ Sbjct: 420 EGNDPSGNPVQ-LPNSEALLSAAFQADQGFDND-ALTMGNIGYLWYQVDGVTPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V WK + + ++ + ++L G I G T I R N+ Sbjct: 478 EVKDKVAAAWKGEEAVKRLNQRVDELQKRLD-GGATLDAIATEQGVEKQTKRGIVRTTND 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596 G +Q+F G + + ++FKV GP ++ YL Sbjct: 537 ADI-GTAAAAQIFRGANGFTGSAAAPSDDAQILFKVVEVTEPAGAGPEAIPEQQQKYLAT 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 ++ D+L+ ++ L+ QY V ++ +I L Sbjct: 596 SLSDDVLEQLVGELQKQYPVKINQTVINNAL 626 >gi|296101563|ref|YP_003611709.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056022|gb|ADF60760.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 623 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 121/634 (19%), Positives = 265/634 (41%), Gaps = 21/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L ++ L+ L+ A LDQ+ + +GL +V Sbjct: 60 AGERNRMQQQLGDQFSELAANEGYMKTLRQQTLNRLIDEALLDQYAKKLGLGISDEQVKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F + KF + + S + + G+ +Y L+ ++ VG Sbjct: 120 AIFSTQAFQS-NGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A S+A + W+E+ K+++ APE R+SYI Sbjct: 179 ETDELAALVAQQRVVRQATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ ++ E+Q+ Y+++++++ P+ + + +A L KG F Sbjct: 239 DAAALQE--TATDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+ + + + +G PD L KG + VI S G+++A + Sbjct: 297 TVAKAKSTDIISAKNGGDMGWLEAATTPD---ELKNAGLKDKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+ + T EV+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIEAAKTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + G+D +E+ P + + + G++ + + DG +V ++ E Sbjct: 412 KAVETGWFGRDNLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +++ + K GK D K G S Sbjct: 472 KPEAIKPLAEVKDQVVAQVKHSKAEQQAKLDAEKILADL-KAGK--EDALKAAGLSFGDA 528 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 ++R + G+S ++ + + + P ++ + Sbjct: 529 KTLSRTGQDPISQAVFGLSLPAKDKPSFGTTTDMQGNVVLLALDEVKAGTMPEAQRKAMV 588 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +TQ + +++++ L+ + + + D + Q+ Sbjct: 589 QGITQNNAQIAFEAMMSNLRKEAKIKLGDAITQQ 622 >gi|309787033|ref|ZP_07681645.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617] gi|308924611|gb|EFP70106.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617] Length = 611 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 122/626 (19%), Positives = 261/626 (41%), Gaps = 28/626 (4%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + KI ++ V F++ G+S L G++ V Q++ F N++ E + Q++G Sbjct: 1 MLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLG 59 Query: 73 FVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + L +++L+ L+ A LDQ+ ++ L +V I +P F D Sbjct: 60 DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VD 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF + + L + G+ +Y L+ ++ G D+ + Sbjct: 119 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 178 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R V ++ + A + + ++E+ K+N+ PE R+SYI D + +S Sbjct: 179 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVS 236 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307 + ++Q+ Y+++++++ P+ + + EA L KG F LA+E+ + Sbjct: 237 DADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIIS 296 Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + +G IPD L +KG + VI S G++I + +I+P+ S Sbjct: 297 ARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLD 353 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 EV+ DIA ++R KA + +++ + A + ++ E+ + + KD Sbjct: 354 EVRDDIAAKVRHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKATQTGWFSKDN 411 Query: 426 KGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVL 483 +E+ P + + + G++ + + DG +V +I E P + L +V Sbjct: 412 LPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQ 471 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 VK + K ++ A +L+++ K GK + + G ++R + Sbjct: 472 EQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD--- 526 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599 + P + + + + + V+ + K G P +K + +TQ Sbjct: 527 -PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNA 585 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + +++++ L+ + + + D L Q+ Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611 >gi|332098560|gb|EGJ03526.1| PPIC-type PPIASE domain protein [Shigella boydii 3594-74] Length = 611 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 121/626 (19%), Positives = 261/626 (41%), Gaps = 28/626 (4%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + KI ++ V F++ G+S L G++ V Q++ F N++ E + Q++G Sbjct: 1 MLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLG 59 Query: 73 FVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + L +++L+ L+ A LDQ+ ++ L +V I +P F D Sbjct: 60 DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VD 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF + + L + G+ +Y L+ ++ G D+ + Sbjct: 119 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 178 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R V ++ + A + + ++E+ K+N+ PE R+SYI D + +S Sbjct: 179 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVS 236 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307 + ++Q+ Y+++++++ P+ + + EA L KG F LA+E+ + Sbjct: 237 DADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIIS 296 Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + +G IPD L +KG + VI S G++I + +I+P+ S Sbjct: 297 ARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLD 353 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 EV+ DIA +++ KA + +++ + A + ++ E+ + + KD Sbjct: 354 EVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKATQTGWFSKDN 411 Query: 426 KGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVL 483 +E+ P + + + G++ + + DG +V +I E P + L +V Sbjct: 412 LPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQ 471 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 VK + K ++ A +L+++ K GK + + G ++R + Sbjct: 472 EQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD--- 526 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599 + P + + + + + V+ + K G P +K + +TQ Sbjct: 527 -PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNA 585 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + +++++ L+ + + + D L Q+ Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611 >gi|260776378|ref|ZP_05885273.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus ATCC BAA-450] gi|260607601|gb|EEX33866.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus ATCC BAA-450] Length = 619 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 126/632 (19%), Positives = 256/632 (40%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + S ++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +++ L+Q E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSTLLADPNYVESFRKSVLDRMINDLLLEQHAESLGLRVSDSQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ + L R G + + ++ + L R ++ Sbjct: 120 MIVDMPQFQ-VDGKFDQEIYQASLRRAGFSPDSFAEYLRRDLVRNQLLTAIQASDFSLEG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + + L+ + A+ S + ++ + + Y PE +++Y+ Sbjct: 179 EVEAQSKLLTQTREIKKVTLSLSDFASKAELSEQEINDYYTQNPERYTRPEQVKVAYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I++S+++ + Y+++ +KY S E R V ++ ++ +A L G Sbjct: 239 SAQQLKDAIDVSDEQAKQYYQEHLDKYSSEEQRRVSHILIEGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ SLG ++ + D + ++ F+L K GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKKAGDVTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S ++EV +I +++ +A ++ E +LE S+D+ + K Sbjct: 358 KLDELKDSVAKPYEEVASEIKQELKDQQAIDQFYELQSQLETVAFEYPDSLDDAADAIKA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + A E+ P Q + K+D L+ + + + V++++ Sbjct: 418 EIHTTDFISQA----DAPELLKAPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L+EV V VK + A+ LV E K K+ +T Sbjct: 473 ARDETVLPLDEVREQVTTALAKVKGEQSAIKLADNLVAELKKGNKDL-----------MT 521 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQ 585 N + D+EN VFS VV ++TN K Q Sbjct: 522 ENGLAFSDSENIDRSSPLADVVFSMKKPSSGQVEFAQAKDFNGDIVVVELTNVKSDVNAQ 581 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + LTQM + L +I L+ + Sbjct: 582 YNEQIGTQLTQMNAQQDLSGLINILRKTIDIE 613 >gi|317492905|ref|ZP_07951329.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919027|gb|EFV40362.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 627 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 117/637 (18%), Positives = 258/637 (40%), Gaps = 25/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ V F++ G+ L SG V Q++ + Sbjct: 1 MMDNLRAAANHVVLKIILGLIIVSFVLTGVGGYLTGGSG-DYAAKVDGQEISRGQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + L K+ L+ L+ LDQ+ + +GL +V Sbjct: 60 QSERSRLQQQLGDQFSVLAGNEGYMKELRKQALNRLIDDMLLDQYAKKLGLGISDEQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F + ++S +A G+ Y + L+ ++ + + Sbjct: 120 AIWAMPYFQ-TNNQFDNAKYLSIIANMGLTPDNYAQLVRQQLTSQQLIQAYTATGFTLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R V ++ + + ++ L ++E+ K+++ APE ++SYI Sbjct: 179 EVEAMAALTMQQRDVRLATIDIKALEKDQKVTDEELKAYYEQNKNSFIAPEEVKVSYIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + K+ +S+DE+ A Y+++K Y PE + + + +A L G F Sbjct: 239 DAAAIQDKVTVSDDEIAAYYDQHKSSYTQPERKDYSVIQVKTEADAKAVLDELNSGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 ++A E+ + LG PD L L KG + + S GY++ + Sbjct: 299 KVAAEKSTDIISRKKGGELGWLEPGTTPDEILG---AKLTTKGQLSGAVKSSVGYLVVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++IKP EV+ DI Q++ KA + +++ + + + + ++ E+ + Sbjct: 356 NDIKPEQVKPLAEVRADIEAQVKQQKALDAFFALQQKVSD--SATSDNESLAGAEEAAGV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D + P + + +FG++ + V +G ++I Sbjct: 414 KATETGWFTRDNVPAAINFKPVTQAIFEGSLFGENGAPGSNSDVISVEGDRAFVIRISAH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + +++V + + K K ++ ++ ++L+ + GK + K G S Sbjct: 474 KPEAVKPMDQVKEQITEMVKRQKAIQQARTEGDKLLTAL-QAGKG-EEALKAAGISFGAE 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587 + R + + D + + + P + + + + V+ ++ K G +E Sbjct: 532 QTLTRASEDRQL--ADTVFAL-AQPKDNKPVYGLAQDRQDNIVLIQLDAVKSGHLSNEEL 588 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 F S + DS++ L++ + + + Sbjct: 589 KAFSSQMLTGSTGITFDSLMDNLRANAKIKLGSAASE 625 >gi|62179064|ref|YP_215481.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126697|gb|AAX64400.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 623 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 277/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK+ + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKSAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|224582290|ref|YP_002636088.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466817|gb|ACN44647.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 623 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 127/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 +NR + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLNRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|197248545|ref|YP_002145433.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212248|gb|ACH49645.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 623 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 275/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|168237567|ref|ZP_02662625.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737891|ref|YP_002113483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713393|gb|ACF92614.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289587|gb|EDY28950.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 623 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|295096773|emb|CBK85863.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 623 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 119/633 (18%), Positives = 263/633 (41%), Gaps = 21/633 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIG-GGANYAAKVNGQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L ++ L+ L+ A LDQ+ + +GL +V Sbjct: 60 AGERNRMQQQLGDQYSELAANEGYMKNLRQQTLNRLIDEALLDQYAKSLGLGISDEQVKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F + KF + + S + + G+ +Y L+ ++ VG Sbjct: 120 AIFSTQAFQS-NGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R V ++ + A S+A + ++E+ K+N+ +PE R+SYI Sbjct: 179 ETEELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAYYEQNKNNFISPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ ++ E+Q+ Y+++++++ P+ + + EA L KG F Sbjct: 239 DAAAMQENA--TDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEAEAKAVLDELNKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + + + +G + PD L +KG + VI S G+++A + Sbjct: 297 TLAKAKSTDIISAKNGGDMGWLEESTTPD---ELKNAGLKEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I + T +V+ DIA +++ KA + +++ + A + ++ E+ + Sbjct: 354 DDIVAAKTKPLADVRDDIAAKVKQEKALDAFYALQQKVSD--AASNDNESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + + +E+ P + + + G++ + + DG +++ E Sbjct: 412 KAVETGWFSHENLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K A++ A +++ + K GKN D K G S Sbjct: 472 KAEAVKPLAEVKDQVVALVKHNKAAQQAKLDAEKILADL-KAGKN--DALKAAGLSFGEA 528 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 ++R + G+S ++ + + + P +K + Sbjct: 529 KTLSRTGQDPVSQAAFGLSLPAKDKPVYGTTTDMQGNVVLLALDEVKAGTLPDAQKKAMV 588 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +TQ + +++++ L+ + + + D + Q Sbjct: 589 QGITQNNAQIAFEAMMSNLRKEAKIKLGDVVTQ 621 >gi|16763833|ref|NP_459448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615353|ref|YP_001589318.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551732|ref|ZP_02345485.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990436|ref|ZP_02571536.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231441|ref|ZP_02656499.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240281|ref|ZP_02665213.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261111|ref|ZP_02683084.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818936|ref|ZP_02830936.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442454|ref|YP_002039695.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448749|ref|YP_002044487.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469679|ref|ZP_03075663.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262652|ref|ZP_03162726.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390757|ref|ZP_03217368.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855932|ref|YP_002242583.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418959|gb|AAL19407.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161364717|gb|ABX68485.1| hypothetical protein SPAB_03124 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401117|gb|ACF61339.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407053|gb|ACF67272.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456043|gb|EDX44882.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197240907|gb|EDY23527.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603202|gb|EDZ01748.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323503|gb|EDZ11342.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330915|gb|EDZ17679.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333949|gb|EDZ20713.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340141|gb|EDZ26905.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344153|gb|EDZ30917.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350111|gb|EDZ36742.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707735|emb|CAR32020.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245735|emb|CBG23532.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992168|gb|ACY87053.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157063|emb|CBW16547.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911485|dbj|BAJ35459.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084726|emb|CBY94517.1| putative protease maturation protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226030|gb|EFX51081.1| Peptidyl-prolyl cis-trans isomerase ppiD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713525|gb|EFZ05096.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128772|gb|ADX16202.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987401|gb|AEF06384.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 623 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|322614730|gb|EFY11659.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618836|gb|EFY15724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623543|gb|EFY20382.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629158|gb|EFY25937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631879|gb|EFY28633.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637384|gb|EFY34086.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642069|gb|EFY38679.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647888|gb|EFY44363.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322653272|gb|EFY49605.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660579|gb|EFY56815.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664731|gb|EFY60924.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669216|gb|EFY65366.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670761|gb|EFY66894.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679000|gb|EFY75055.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682029|gb|EFY78054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685142|gb|EFY81139.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192964|gb|EFZ78187.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196954|gb|EFZ82096.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203939|gb|EFZ88956.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206976|gb|EFZ91929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214179|gb|EFZ98937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214497|gb|EFZ99248.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219161|gb|EGA03658.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227003|gb|EGA11184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230179|gb|EGA14299.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233917|gb|EGA18006.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238389|gb|EGA22447.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244076|gb|EGA28085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246237|gb|EGA30220.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251863|gb|EGA35726.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257859|gb|EGA41538.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261127|gb|EGA44719.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264943|gb|EGA48442.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272506|gb|EGA55913.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 623 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEEMNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|114707419|ref|ZP_01440315.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506] gi|114536978|gb|EAU40106.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506] Length = 629 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 167/629 (26%), Positives = 290/629 (46%), Gaps = 8/629 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +RKA+ W AKI L +L + F +WG+ D +F + V+SVG VP + + ++ Sbjct: 1 MLNSLRKATTGWTAKILLGLLVISFAVWGIGD-VFRSGNQNAVLSVGETDVPLAEYALTY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q I++++G + E A + G+D+ +L LVSGA L + +IGL R+ IA Sbjct: 60 NQASSGIARQLGRPLTPEEAATFGIDQAVLSQLVSGAVLTEQARNIGLGISDERLARLIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F FS F + L + + E +YI+ RT +V G+ + Sbjct: 120 DDPSFQDASGNFSRAQFRNLLNQARLRESDYIEFQEDAAMRTQIVDAVSNGITLPKAYEE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E R+V YI + + + +PS+ L +FE+ K +Y APEY+ ++ Sbjct: 180 ALGLFNGERRNVSYISVGPGALESEPEPSDEALQAYFEENKQDYAAPEYRGLAVARLTRE 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I+++++ A+YE+ + +Y E R V Q+VF ++ A EA + L G F +A Sbjct: 240 TIADESAITDEQVAADYEQYQSRYGEAERRQVSQIVFGDEAAATEAAEKLANGATFENVA 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 GK+ +D ++G ++E IPD S+ D+ F+L + G + VI G FG I VS I+ + Sbjct: 300 RAAGKNPADTAIGLVTREDIPDPSIRDAAFAL-ESGQTSDVIDGRFGPTIVRVSEIQEAS 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +EV DI + + AS+ + Y+ E+ A G + +E ++ + VD Sbjct: 359 VTPLEEVAGDIRRDLALNNASDTLNAAYQTYEDARASGATFEEATQEAGLKVETYEAVDS 418 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G++ G+ + I LL F + P + + D Y++ + + PARDR L+ Sbjct: 419 QGRNPSGEAIEGISGNGDLLEEAFQTE-PGFDNIPITTEDNGYLFFDVTDIQPARDRTLD 477 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EV V DW +T + + + E ++ GK+ +I + G + + I R Sbjct: 478 EVRQQVVDDWTRDETL-RLVEERAAALAEEARGGKSLENIAEENGLEVASAVGITRQSGA 536 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD---KFISYLTQM 597 + G F+ V L VV K+ + I + Sbjct: 537 GEI-GAQASQAAFASGQGSVAAAKGRGELEQVVLKIDEVAPPAAPLDNVNRTQIGQVQTG 595 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + DL+ S + ++ +Y + ++ N I+ Sbjct: 596 LTNDLVQSYVTRVQGEYPLQIYPNGIENA 624 >gi|16759432|ref|NP_455049.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142796|ref|NP_806138.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160790|ref|ZP_03346500.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425852|ref|ZP_03358602.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646001|ref|ZP_03376054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850134|ref|ZP_03381032.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829271|ref|ZP_06546883.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25320965|pir||AG0558 peptidylprolyl isomerase (EC 5.2.1.8) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501723|emb|CAD08911.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi] gi|29138428|gb|AAO69998.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 623 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|168465546|ref|ZP_02699428.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631887|gb|EDX50407.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 623 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGHMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDTYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|325498268|gb|EGC96127.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia fergusonii ECD227] Length = 611 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 121/626 (19%), Positives = 265/626 (42%), Gaps = 28/626 (4%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + KI ++ V F++ G+S L G++ V Q++ F N++ E + Q++G Sbjct: 1 MLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNGQEISRGQFENAFNSERNRMQQQLG 59 Query: 73 FVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + L +++L+ L+ A LDQ+ D+ L +V I +P F D Sbjct: 60 DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQAIFATPAFQ-VD 118 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF + + + L + G++ +Y L+ ++ G D+ + Sbjct: 119 GKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGETDELAALVSQQ 178 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R V ++ S+A +T +++++K+N+ PE R+SYI+ D + +S Sbjct: 179 RVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLDAANI--QQPVS 236 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307 + ++QA Y+++++++ P+ + + EA +L G F +LA+E+ + Sbjct: 237 DADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAKEKSADIIS 296 Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + LG P L D+ L KG + VI S G+++ + +++P+ + Sbjct: 297 ARNGGDLGWLEDSTTP-QELKDA--GLKDKGQLSGVIKSSVGFLVVRLDDVQPAKVKTLA 353 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 EV+ DIA +++ KA + +++ + A + ++ E+ + + + Sbjct: 354 EVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKAKETGWFSQQN 411 Query: 426 KGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVL 483 +E+ P + + + G++ + + DG +V ++ E + L EV Sbjct: 412 LPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEHKAEAIKPLSEVK 471 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 VK + K ++ +A +L++E K GK D + G ++R + Sbjct: 472 DQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGV-DAMRAAGLQFGEQKTLSRSGQD--- 526 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599 + P + + + + V+ V K G P +K + +TQ Sbjct: 527 -PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLAVDEVKAGTMPEAQKQALVQGITQNNA 585 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + +++++ L+ + + + D L Q+ Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611 >gi|198244647|ref|YP_002214406.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939163|gb|ACH76496.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 623 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 275/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q + + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQGISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|182678431|ref|YP_001832577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634314|gb|ACB95088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica subsp. indica ATCC 9039] Length = 640 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 155/639 (24%), Positives = 307/639 (48%), Gaps = 22/639 (3%) Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 MLE +R A+R W+ + + ++ + F+IWG+ D +F G++T+ VG ++ ++ Sbjct: 1 MLEAMRVATRGWIGRSLMTLVMGLIILSFIIWGVGD-MFRNLGANTLAKVGDTEITTQAY 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ L + ++ + E AR +GLD++IL L+ ATL+Q + +GL + Sbjct: 60 REAYSTILQRLQRQARRAITHEEARMLGLDRQILARLIGEATLNQEADKLGLALADSEIA 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 IA+ LF G + F F + L G+ EK ++ ++L R + V G+ Sbjct: 120 RIIAKDELFKGANGAFDRQRFEALLRDNGMTEKTFVREQHELLLRHMITDAVVTGLSVPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++L+ F E R VD +L V IA P+ L+++F Y E +++ + Sbjct: 180 IMLEMIHAFQTEARDVDTFLLPASSVGEIAAPTEDELSKYFADRAQAYATQERRKLLILS 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D I+ +++Q Y+ K E++ PE R +EQ+ FP+ A +A Q L +G+ Sbjct: 240 LDPTTLAATQTIAPEDVQKLYDSVKAERFSVPEKRQIEQISFPDLATAGKARQRLDQGEN 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F L +Q S D LG+ ++ + D +A++ F+L + G + I +FG + + Sbjct: 300 FEALLADQHISAKDADLGTLARSDLIDQKIAEAAFALPE-GAVSQPIQDAFGAKLLRIVK 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I P+ F V+ + ++ KA +++ + ++E+ A G ++ E+++ + + + Sbjct: 359 IIPASVQPFASVEAGLKQELATAKARQEITGLHDKIEDLRASGKNLSEVAQSLGLKTQLI 418 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 VD G++ +G +A +P LL F D + D T+ P G ++W +++ AR Sbjct: 419 ESVDAHGQNAQGAPIADLPNGPALLKAAFASDVGVDND-TLTTPQGGFVWFEVQGVDKAR 477 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG-ASLLTTNQI 534 R LEE ++V+ W+ +T +++ A +L+ E GK+ D+ ++ G + + Sbjct: 478 RRTLEEARSEVEAAWRQDETNRKLALAAAELI-EQIDGGKSIADVARDHGNLEVRHVEGV 536 Query: 535 NRMD------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 R D K + ++Q+F+ V V +G ++F+V ++KV P Sbjct: 537 TRADVQPTGNTPGKGLPPNVVTQIFNVGVHGVGSAADASG--RLIFQVQDAKVPPFDPAA 594 Query: 589 KFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLI 623 ++ + + + +D+L +A L+ + V+ + Sbjct: 595 PALTAIAKEADGGIKEDVLAQYVAKLQKDFGTKVNLQAL 633 >gi|238911417|ref|ZP_04655254.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 623 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 275/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQLVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGLNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|161504371|ref|YP_001571483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865718|gb|ABX22341.1| hypothetical protein SARI_02482 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 623 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 122/638 (19%), Positives = 274/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D +F ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGRFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V ++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREATIDVNALAAKQQATDQEVSSYYDQNKTRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHLDQFTQPERHRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDVQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L V V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAAVKEQVIALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ + K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNIVLLALDEVKAGSMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMMQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|205351763|ref|YP_002225564.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271544|emb|CAR36362.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626798|gb|EGE33141.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 623 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNLLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|56414392|ref|YP_151467.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363312|ref|YP_002142949.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128649|gb|AAV78155.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094789|emb|CAR60322.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 623 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 276/638 (43%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKSRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QALVSDADIQAYYDQHLDQFTQPERTRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG V++ E Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L EV V K K ++ A +L++E K GK + K G S Sbjct: 472 KPEAAKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + + S P + + + N + + V+ K G P +K Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623 >gi|51595313|ref|YP_069504.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pseudotuberculosis IP 32953] gi|153948580|ref|YP_001402048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pseudotuberculosis IP 31758] gi|170025447|ref|YP_001721952.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis YPIII] gi|186894330|ref|YP_001871442.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis PB1/+] gi|51588595|emb|CAH20203.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Yersinia pseudotuberculosis IP 32953] gi|152960075|gb|ABS47536.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP 31758] gi|169751981|gb|ACA69499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis YPIII] gi|186697356|gb|ACC87985.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis PB1/+] Length = 628 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 268/638 (42%), Gaps = 25/638 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q + + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNDQDISRAQLEQAM 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + QK+G + + L +++L L++ LDQ+ +GL +V Sbjct: 60 QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F ++ F ++ +++ + + G +++ + L ++ F + Sbjct: 120 SIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPI 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V L+ + + A ++ L ++++ K N+ APE ++S+I Sbjct: 179 EVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + I ++ +++ A Y++N+ Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+E+ + + LG E PD +L++KG + VI S GY+I + Sbjct: 299 VIAKEKSTDIISRNNGGELGWLEPETTPD---EVKAANLSEKGQLSDVIKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++IKP EV ++A +++ KA + +++ + A + + ++ E++ Sbjct: 356 NDIKPELVKPLSEVHDELAKKLKQEKALDAYYALQQKVND--AATSDNESLASAEEVAGT 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D E+ P + + R+ G++ + V DG ++I Sbjct: 414 KAQQTGWFTRDTVPAEINFKPVVQAIFDGRLVGENGSAGSNSEVITVDGDRAFVIRIDGH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P ++V + + K K ++ +++ K+GK + K+ G S Sbjct: 474 KPEGIEPFDQVRDQISELVKRQKAEQQARVDGEKILTAL-KQGKG-EEAMKSAGISFGEK 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589 ++ +++ + P + + + + V+ ++ + G +QE + Sbjct: 532 KTLSYASVDDQLMQTIF---ALAHPQKDQPVYGLSQDRQGNIVLIELLSVTPGKLQESET 588 Query: 590 --FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI + + + D+++A L Q ++ + Q+ Sbjct: 589 KIFIEKMQEESVSMIFDALMANLHKQATIKIGPAEQQQ 626 >gi|290510114|ref|ZP_06549484.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55] gi|289776830|gb|EFD84828.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55] Length = 624 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 274/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF + F +A+ G+ +Y L+ ++ G Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + R V +N + A S+ + ++++ + + APE R+SYI Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTVSDEEINAFWQQNQARFMAPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L D+ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDA--GLNEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ +V+ DIA +++ KA + +++ + A + ++ ++ + Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAAQVAGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + + G+D +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ A++L+ K+GK + K G S Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + ++ P + + + + + V+ + K G P ++K Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + D++ Q+ Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|330011537|ref|ZP_08307123.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3] gi|328534154|gb|EGF60789.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3] Length = 639 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 122/638 (19%), Positives = 274/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 16 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + + +++L+ L+ + LDQ+ ++GL +V Sbjct: 75 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 134 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF + F +A+ G+ +Y L+ ++ G Sbjct: 135 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 193 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + R V +N + A S+ + ++++ + + APE R+SYI Sbjct: 194 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINVFWQQNQARFMAPEQFRVSYIKM 253 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S+DE+Q+ Y+++K+++ P+ + + +A L+KG F Sbjct: 254 DAASMQESA--SDDEIQSWYDQHKDQFTQPQRSRYSVIQTKTEADAKAVLAELQKGADFA 311 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G L D+ L +KG + VI S G+++A + Sbjct: 312 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 368 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ +V+ DIA +++ KA + +++ + A + ++ ++ + Sbjct: 369 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLASAAQVAGL 426 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + + G+D +E+ P + + + G++ + + DG +V +I E Sbjct: 427 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 486 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ +A++L+ K+GK + K G S Sbjct: 487 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAAL-KDGKG-DEAMKAAGLSFGAP 544 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + ++ P + + + + + V+ + K G P ++K Sbjct: 545 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEEQK 600 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + D++ Q+ Sbjct: 601 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 638 >gi|299134975|ref|ZP_07028166.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] gi|298589952|gb|EFI50156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] Length = 617 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 154/619 (24%), Positives = 283/619 (45%), Gaps = 13/619 (2%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +L V F +WG++D +F S +T+ +VG +P F +++ +L IS++I + Sbjct: 3 VLFGILIVSFAVWGIAD-IFKGSTQTTLATVGNTDIPLEQFRSAYTDKLQQISRQIRRPL 61 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + R+ G+D+++L ++ LD+ +GL + I+ P F G + KF Sbjct: 62 TPTQGRAFGIDRQLLQQTIAETALDEEGRRMGLRMSDAEIVRTISSDPTFAGPNGKFDPA 121 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F + E+ YI ++ R +++G V G+ P+ ++ RF E R++DY Sbjct: 122 RFAMAMRDYSYTEQRYIAEQRRLTLRRELIGSIVAGVEPTKTQIEAISRFQDEQRTIDYA 181 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 + I PS L +FE +K +RAPEY+++ Y+ E KK+ +S+D+ + Sbjct: 182 KIGPDQAGTIEAPSPDALNTYFEAHKAQFRAPEYRKVVYLTLSPDELAKKVVVSDDDARK 241 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 Y+ + Y P+ R V+Q+ F ++ A A + G F LA++ + D++LG Sbjct: 242 VYDSRRADYVKPDRREVQQIAFQSEDAAKAARAKIAGGMSFEDLAKDMKLTSGDMNLGLV 301 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S++ + D +A + F+L + + + G+ V+ V+ I+P T +F++V I ++ Sbjct: 302 SEKSLGDPIIAKAAFALPLN-EVSQPVKGALATVLLKVTKIEPGSTEAFEKVAPAIKKEI 360 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + + +E+ + G S+ E +++ + + + VD +G+ GKE AA+P Sbjct: 361 AEQRVRTDFDKMRNAVEDERSGGASIAEAAQKSGLEATTVD-VDRSGRTPDGKE-AALPK 418 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 L+ FG D + D G +W + P+RDR L+EV V W+ + Sbjct: 419 GVDLITAAFGSDVGVDNDPL--TFPGGEVWFDVLGITPSRDRTLDEVKDQVTARWRDEQV 476 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 A + +KA +LV + +K G F K G + T+ R D N + F Sbjct: 477 ATRLRAKAKELVEKINKGG-VFATEVKAAGLTTQTSTPFKREDKVNG-LPDIVVDTAFRT 534 Query: 556 PVEMVKCFP-IENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSVIAYL 610 I VVF+VTN V K L Q ++ + + I +L Sbjct: 535 AKGSAAMAENIPASSGVVVFQVTNVATPAVDLNSDASKKMKEGLAQNLSDEQIGQYITHL 594 Query: 611 KSQYSVTVHDNLIQRYLDG 629 ++ V V++N+ Sbjct: 595 ETTLGVKVNENVFAIATGA 613 >gi|22124938|ref|NP_668361.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis KIM 10] gi|45440627|ref|NP_992166.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Microtus str. 91001] gi|108808639|ref|YP_652555.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis Antiqua] gi|108811102|ref|YP_646869.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis Nepal516] gi|145600047|ref|YP_001164123.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis Pestoides F] gi|149365001|ref|ZP_01887036.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125] gi|162420506|ref|YP_001607415.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Angola] gi|165926634|ref|ZP_02222466.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936039|ref|ZP_02224609.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. IP275] gi|166010989|ref|ZP_02231887.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212996|ref|ZP_02239031.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167399316|ref|ZP_02304840.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421506|ref|ZP_02313259.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423714|ref|ZP_02315467.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468476|ref|ZP_02333180.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis FV-1] gi|218930183|ref|YP_002348058.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis CO92] gi|229838757|ref|ZP_04458916.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896089|ref|ZP_04511259.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A] gi|229899325|ref|ZP_04514468.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. India 195] gi|229901331|ref|ZP_04516453.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516] gi|270489517|ref|ZP_06206591.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|294504885|ref|YP_003568947.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003] gi|21957777|gb|AAM84612.1|AE013706_7 putative protease maturation protein [Yersinia pestis KIM 10] gi|45435484|gb|AAS61043.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Microtus str. 91001] gi|108774750|gb|ABG17269.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Nepal516] gi|108780552|gb|ABG14610.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Antiqua] gi|115348794|emb|CAL21748.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CO92] gi|145211743|gb|ABP41150.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides F] gi|149291414|gb|EDM41488.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125] gi|162353321|gb|ABX87269.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis Angola] gi|165916184|gb|EDR34791.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. IP275] gi|165921562|gb|EDR38759.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989989|gb|EDR42290.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205783|gb|EDR50263.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960425|gb|EDR56446.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051820|gb|EDR63228.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057884|gb|EDR67630.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681260|gb|EEO77354.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516] gi|229687727|gb|EEO79800.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. India 195] gi|229695123|gb|EEO85170.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701012|gb|EEO89041.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A] gi|262362950|gb|ACY59671.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D106004] gi|262366870|gb|ACY63427.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D182038] gi|270338021|gb|EFA48798.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|294355344|gb|ADE65685.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003] gi|320016339|gb|ADV99910.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 628 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 268/638 (42%), Gaps = 25/638 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q + + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNDQDISRAQLEQAM 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + QK+G + + L +++L L++ LDQ+ +GL +V Sbjct: 60 QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F ++ F ++ +++ + + G +++ + L ++ F + Sbjct: 120 SIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPI 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V L+ + + A ++ L ++++ K N+ APE ++S+I Sbjct: 179 EVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + I ++ +++ A Y++N+ Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+E+ + + LG E PD +L++KG + VI S GY+I + Sbjct: 299 VIAKEKSTDIISRNNGGELGWLEPETTPD---EVKAANLSEKGQLSDVIKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++IKP EV ++A +++ KA + +++ + A + + ++ E++ Sbjct: 356 NDIKPELVKPLSEVHDELAKKLKQEKALDAYYALQQKVND--AATSDNESLASAEEVAGT 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D E+ P + + R+ G++ + V DG ++I Sbjct: 414 KAQQTGWFTRDTVPAEINFKPVVQAIFDGRLVGENGSAGSNSEVITVDGDRAFVIRIDGH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P ++V + + K K ++ +++ K+GK + K+ G S Sbjct: 474 KPEGIEPFDQVRDQISELVKRQKAEQQARVDGEKILTAL-KQGKG-EEAMKSAGISFGEK 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589 ++ +++ + P + + + + V+ ++ + G +QE + Sbjct: 532 KTLSYASVDDQLMQTIF---ALAHPQKDQPVYGLSQDRQGNIVLIELLSVTPGKLQESET 588 Query: 590 --FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI + + + D+++A L Q ++ + Q+ Sbjct: 589 KIFIEKMQEESVSMIFDALMANLHKQATIKIGPAEQQQ 626 >gi|323138293|ref|ZP_08073365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp. ATCC 49242] gi|322396545|gb|EFX99074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp. ATCC 49242] Length = 635 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 172/641 (26%), Positives = 306/641 (47%), Gaps = 18/641 (2%) Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 MLE +R AS+ W+ + + + V+ V F IWG+ D ++ S V VG +V SF Sbjct: 1 MLEGLRVASQNWIGRTIMAVVMGVIVVSFAIWGVGDVFRGMTTSRLV-KVGSGEVSVDSF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N+++ EL I Q++ V ++ AR GLD ++L+ L++ LDQ +GL + Sbjct: 60 RNAYQNELRRIQQRLRRAVTNQEARQAGLDLQVLERLITEVALDQKARQLGLASSDETTQ 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +A+ + G D KF + F G E+ ++ R + + G+ P Sbjct: 120 QLLAKEKVLQGPDGKFDVERFKQIARDAGFTERGFVADQKSAYLRKLLTDLVTNGVEPPR 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+++ RF E+R++DY VL + PS+ L ++F++ + +RA EY++++ ++ Sbjct: 180 LMIEAIHRFRNESRTIDYFVLPVSAAGPASTPSDEELKKYFDEREQTFRAKEYRKLTALV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 K E++ DE++ YE++K ++ +PE R V Q+V KEA++A LK G Sbjct: 240 VSPTSVGKPGEVTEDEVRKLYEESKARRFGTPEKRDVRQIVLKTDKEAEDALARLKGGMD 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA E + D++LG + D + ++F+LAK G + +FG VI+ V + Sbjct: 300 IDALAAELKLNPKDVNLGLVEQRDFGDAKVGAAVFALAKPG-LAEPVKTAFGTVISQVKS 358 Query: 356 IKPSF-TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I P+ T +F++ ++ ++ KA +V+ + +E+ A G ++ E ++ + Sbjct: 359 IAPAVYTKTFEQAAPELRVEIAAQKAGPEVRRLHDAIEDQRAAGKTLAETAKGVGLDVRV 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + VD AG D GK +A +P LL F D + D TVA DG Y+W ++ PA Sbjct: 419 IEAVDDAGHDKDGKAIADLPAGPDLLKAAFASDVGVDND-TVATRDGGYVWFEVNAVEPA 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R + EEV V + + + ++ KA++LV + + G+ D+ K++ A + + Sbjct: 478 RQKTFEEVKGAVLEAMRNEAAQKALAEKADELVGKL-RSGQPIEDVAKSVNAEVKRATDV 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590 R + F I Q F P P + G +VF V +S E Sbjct: 537 KRAARPD--FNNPTIVQFFDVPPRGAGSLPGDAG--RLVFFVKDSTAPAFDPLSIESKTI 592 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 L ++ DLL+ + L+ +V ++ ++ EK Sbjct: 593 AEQLRPALHNDLLEQFVGGLEKALNVEINQKALEAATGTEK 633 >gi|195936005|ref|ZP_03081387.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli O157:H7 str. EC4024] Length = 608 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 118/622 (18%), Positives = 258/622 (41%), Gaps = 28/622 (4%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 ++ V F++ G+S L G++ V Q++ F N++ E + Q++G + Sbjct: 2 IFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYS 60 Query: 77 ---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + L +++L+ L+ A LDQ+ ++ L +V I +P F D KF Sbjct: 61 ELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQ-VDGKFD 119 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + L + G+ +Y L+ ++ G D+ + R V Sbjct: 120 NSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVR 179 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 ++ + A + + ++E+ K+N+ PE R+SYI D + +S+ +L Sbjct: 180 EATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVSDADL 237 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SD 309 Q+ Y+++++++ P+ + + EA L KG F LA+E+ + + Sbjct: 238 QSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNG 297 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 +G IPD L +KG + VI S G++I + +I+P+ S EV+ Sbjct: 298 GDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRD 354 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 D+A +++ KA + +++ + A + ++ E+ + + K+ +E Sbjct: 355 DVAAKVKHEKALDAYYALQQKVSD--AASNDTESLAGAEQAAGVKATQTGWFSKENLPEE 412 Query: 430 VAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVK 487 + P + + + G++ + + DG +V +I E P + L +V VK Sbjct: 413 LNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVK 472 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 + K ++ A +L+++ K GK + + G ++R + Sbjct: 473 ALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD----PIS 526 Query: 548 GISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLL 603 + P + + + + + V+ + K G P +K + +TQ + + Sbjct: 527 QAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVF 586 Query: 604 DSVIAYLKSQYSVTVHDNLIQR 625 +++++ L+ + + + D L Q+ Sbjct: 587 EALMSNLRKEAKIKIGDALEQQ 608 >gi|206578972|ref|YP_002240079.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342] gi|206568030|gb|ACI09806.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342] Length = 624 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 120/638 (18%), Positives = 273/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF + F +A+ G+ +Y L+ ++ G Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + R V +N + A S+ + ++++ + + APE R+SYI Sbjct: 179 ESDQLAALVSQQRVVREATINVNTLAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L D+ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ +V+ DIA +++ KA + +++ + A + ++ ++ + Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAAQVAGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + + G+D +E+ P + + + G++ + + DG ++I E Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ A++L+ K+GK + K G S Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + ++ P + + + + + V+ + K G P ++K Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + D++ Q+ Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|330829914|ref|YP_004392866.1| peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565] gi|328805050|gb|AEB50249.1| Peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565] Length = 637 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 258/637 (40%), Gaps = 31/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ VAK+ L ++ + F + G+ L + ++ +V ++ ++ N++ Sbjct: 2 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGTEISAAALENAY 60 Query: 61 KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + A + +LD L+ A LD ++GL ++ Sbjct: 61 RNERARMESQMGEAFSQLAANPDYMKQFRRGVLDRLIDQALLDSKARELGLRISDEQIKQ 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F ++ KF++D ++ + R G+ + + D + + R ++ +G Sbjct: 121 AIVAMPEF-AENGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMSALLGTEFSLKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +Q + Y + R + + L + A S+ L Q+++ + E ++ Y+L Sbjct: 180 EAEQLDKLYNQTRDLRLVRLAAANYMADVQVSDNELEQYYKTNGARFMNDEQVKVDYLLL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 D K I+++ + Q Y+++++ + E R V ++ P +++A+ Sbjct: 240 DAANLAKDIKVTEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLAKA 299 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G F LA+ L F K + D + + F+L K GD + V+ F Sbjct: 300 KAGDDFAALAKADSSDTFSAKKGGELDWFEKG-VMDPAFEKAAFALNKAGDLSTVVKSPF 358 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + ++ + T F +VK++ +++ KA EK + +++ + + + D + Sbjct: 359 GFHIIKLLGVEAAQTKPFADVKEETITRLQADKAKEKFFAEQQKMAD--SSFENPDSLDL 416 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + + DF + + P + F +DD + D + L DG + + Sbjct: 417 TADAMGMKVQSSDFFTQATAPAPLND-PKVLSVAFSEQLRDDNTNSD-VIELADGKALVL 474 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 I P + L EV V K K +E KA L L+ K G++ LG Sbjct: 475 HITGHKPKAVKPLAEVKEQVIAAIKHDKASEVARGKAQGL-LDKLKVGESITADLTALGL 533 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVV-FKVTNSK 580 + T + R D E + I+Q F+ P V NG VV N Sbjct: 534 KVETHKGVARFDRE---LDQNLIAQAFTLPHPIDGKPSVALVAETNGDRVVVALDKVNVP 590 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L Q + S+I L+ + Sbjct: 591 AAASGMAAMLQAQLGQGKAQVDYKSLIDELRKAAKIE 627 >gi|288936830|ref|YP_003440889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] gi|288891539|gb|ADC59857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] Length = 624 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 120/638 (18%), Positives = 273/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF + F +A+ G+ +Y L+ ++ G Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + R V +N + A S+ + ++++ + + APE R+SYI Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L D+ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ +V+ DIA +++ KA + +++ + A + ++ ++ + Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAAQVAGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + + G+D +E+ P + + + G++ + + DG ++I E Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ A++L+ K+GK + K G S Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + ++ P + + + + + V+ + K G P ++K Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + D++ Q+ Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|152968976|ref|YP_001334085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893390|ref|YP_002918124.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella pneumoniae NTUH-K2044] gi|150953825|gb|ABR75855.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545706|dbj|BAH62057.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 624 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 274/638 (42%), Gaps = 28/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + + +++L+ L+ + LDQ+ ++GL +V Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF + F +A+ G+ +Y L+ ++ G Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + R V +N + A S+ + ++++ + + APE R+SYI Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F Sbjct: 239 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G L D+ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ +V+ DIA +++ KA + +++ + A + ++ ++ + Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLASAAQVAGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + + G+D +E+ P + + + G++ + + DG +V +I E Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ +A++L+ K+GK + K G S Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAAL-KDGKG-DEAMKAAGLSFGAP 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + ++ P + + + + + V+ + K G P ++K Sbjct: 530 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEEQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + D++ Q+ Sbjct: 586 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623 >gi|262042477|ref|ZP_06015636.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040181|gb|EEW41293.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 638 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 274/638 (42%), Gaps = 29/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+ Sbjct: 16 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIG-GGKNYAAKVNGQEIGRGQFENAV 74 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + + +++L+ L+ + LDQ+ ++GL +V Sbjct: 75 ASERNRM-QQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 133 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF + F +A+ G+ +Y L+ ++ G Sbjct: 134 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 192 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + R V +N + A S+ + ++++ + + APE R+SYI Sbjct: 193 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 252 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F Sbjct: 253 DAASMQESA--SDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 310 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G L D+ L +KG + VI S G+++A + Sbjct: 311 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDA--GLKEKGQLSGVIKSSVGFLVARL 367 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ +V+ DIA +++ KA + +++ + A + ++ ++ + Sbjct: 368 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLASAAQVAGL 425 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + + G+D +E+ P + + + G++ + + DG +V +I E Sbjct: 426 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 485 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L EV V K K ++ +A++L+ K+GK + K G S Sbjct: 486 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAAL-KDGKG-DEAMKTAGLSFGAP 543 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 ++R + ++ P + + + + + V+ + K G P ++K Sbjct: 544 QTLSRTGQD----PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEEQK 599 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + +TQ + +++++ L+ + + D++ Q+ Sbjct: 600 KAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 637 >gi|323495052|ref|ZP_08100141.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG 20546] gi|323310709|gb|EGA63884.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG 20546] Length = 619 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 131/628 (20%), Positives = 268/628 (42%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + S ++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ + K +LD +V+ L+Q E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAESLGLRVSDSQVRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ + L R G + + + ++ + L R ++ G Sbjct: 120 LILEMPQFQ-VDGKFDQEIYQTALRRAGFSAESFAEYLRRDLVRNQLMTAIQGSDFALPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + + L+ A A+ S ++ ++++ + Y PE +++Y+ Sbjct: 179 EVEAQSKLLTQTRDIKKVTLSLADFAAKAELSEQEISDYYQQNPERYTRPEQVKVAYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ IEIS+++ + Y+++ +KY S E R V ++ +Q +A L G Sbjct: 239 SAQQLKENIEISDEQAEKYYQEHIDKYSSEEQRRVSHILIEGDDQAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ SLG ++ + D S ++ F+L K G+ T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPSFEEAAFALTKVGETTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S +QEV +I +++ +A ++ E LE+ S+D+ ++ Sbjct: 358 KLDELKDSVAKPYQEVAAEIKQELKDQQAIDQYYELQSELEKVAFEYPDSLDDAAKAINA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + V E+ P Q + K+D L+ + + + V++++ Sbjct: 418 EIHTTDFISQ----VDAPELLKTPAVLQAIVSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S LE+V +DV K VK + A LV E KEGK +D+ G + Sbjct: 473 SRDETVLPLEQVRSDVTKALANVKGEQTAIELAQNLVAEL-KEGK--QDLLSESGLAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589 T ++R + + V G V + + VV ++T Q + Sbjct: 530 TETLDRSSPLADVV-FSMVKPV-DGGVGFAQAKDLNG--DIVVVELTKVASDFDPQYNQQ 585 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+Q+ + L +I+ L+ + Sbjct: 586 IGAQLSQVNAQQDLTGLISILRKTIDIE 613 >gi|163868048|ref|YP_001609252.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP 105476] gi|161017699|emb|CAK01257.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP 105476] Length = 628 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 155/636 (24%), Positives = 318/636 (50%), Gaps = 17/636 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML++IR A+ +W+ +IFL +L + F++ WG+ +++ G+ + + + Sbjct: 1 MLDVIRSAANSWIFRIFLAILLLCFILLWGIPQ--LHTKSERDLITSGKSIITIDDYRLA 58 Query: 60 WKQELGMISQK--IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++Q +G + + + + + L LD+ + + + Sbjct: 59 LADQSARLAQAAHLGRMFTPNEMQQYQIPAFVFNQLQQNVLLDEQARKMKISLSKDTIAH 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F + F+ D+F + L I E ++++YTK R ++ + M+ NL Sbjct: 119 TIGSDKMFQ-INGTFNKDLFYNYLQHLRIGESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E RS DY++++ + IADP + L +WFE ++ +RAPEY+ +S + Sbjct: 178 FYKALALYQEEKRSADYLIIDLKE-QTIADPDHETLQKWFETHQSEFRAPEYRTVSLLSM 236 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++++ K +IS DE +A Y +N + +PE RT E+L FP ++EAD A + + G F Sbjct: 237 ELNDFVKPKDISTDEAKAYYTQNTSHFVTPEKRTFEELRFPTREEADNAAKKIADGLSFD 296 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +L + + K+L+DI G ++ +P+ LA IF L ++G +PVI+ G V+ V++I+ Sbjct: 297 ELVKAEKKTLNDIKKGPLAENELPN-HLASEIFEL-QQGQVSPVINDLQGPVLIRVTHIE 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS ++ F+ V++ I + +A++ ++ +Y +E G S+ E++ + K+ + Sbjct: 355 PSSSLPFESVEESIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKLSLRTI-T 413 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK ++G+ + +P K+ LL ++ ++ + D ++ +G Y+W ++ + IPARD+ Sbjct: 414 LDKTGKTLEGETLTDLPQKDALLDAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 472 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 LEE DV WK+ +T + KA L+ EGK+ D+ + LG + TT + R Sbjct: 473 TLEEAELDVLSQWKSEETQRLLDEKAQN-ALKQFMEGKSLVDLARTLGVTKQTTPPLRRQ 531 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593 D + G +G+ +FSGP + +++++ + + P + + Sbjct: 532 D-PFEILGVEGVKALFSGPKGHYGIIKGPVATNRIIYQINSVTMPKDITPHTLSPEVRTN 590 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + M+ +DL ++ ++ + ++ + + Sbjct: 591 IDMMIREDLKLEMLQIANKEHPLEINSKNYNQIFNA 626 >gi|117618139|ref|YP_856546.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559546|gb|ABK36494.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 636 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 124/640 (19%), Positives = 259/640 (40%), Gaps = 37/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ VAK+ L ++ + F + G+ L + ++ +V + ++ N++ Sbjct: 1 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGNDISSAALENAY 59 Query: 61 KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + A + +LD L+ A D ++GL ++ Sbjct: 60 RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +D KF++D ++ + R G+ + + D + + R ++G +G Sbjct: 120 AIVAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +Q + Y + R + + L S+ + Q+++ ++ E ++ Y+L Sbjct: 179 EAEQLDKLYNQTRDLRLVRLAASAYLGDVKVSDEEVEQYYKANSSHFMNDEQVKVDYLLL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 D K +++S + Q Y+++++ + E R V ++ P +++A+ Sbjct: 239 DAATLGKDVKVSEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLTKA 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G F LA+ L F K + D + + F+LAK GD + V+ F Sbjct: 299 KAGDDFAALAKADSSDTFSAKKGGELDWFEKG-VMDPAFEKAAFALAKAGDLSTVVKSPF 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ + + ++P+ T F +VK + ++++ KA E + +++ + + + D + Sbjct: 358 GFHVIKLLGVEPAQTKPFADVKAETISRLQADKAKELFFAEQQKMAD--SSFENPDSLDL 415 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYM 464 + + + + + + ++L F + D + + L DG + Sbjct: 416 TADTMGLKVQSTGYFSQADAPAPLND----PKVLSAAFSEQLRDDNTNSDVIELADGKAL 471 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 + I P + L EV V K K +E KA L L+ K G+N + L Sbjct: 472 VMHITGHQPKAAKPLAEVKEQVIAAIKHDKASEVARGKAQGL-LDKLKAGENIQAELTAL 530 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVF--KVT 577 G + + + R + + ++Q F P V+ NG VV KVT Sbjct: 531 GLKVENHDGVARF---AQDLDQNLVAQAFRMPHPIDGKPSVELVTEANGDRVVVALDKVT 587 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +K P L Q + S+I L+ + Sbjct: 588 VAK-EPSGMAKLLQGQLGQGKAQVSYKSLIDELRKSAKIE 626 >gi|319404079|emb|CBI77667.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella rochalimae ATCC BAA-1498] Length = 629 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 161/626 (25%), Positives = 305/626 (48%), Gaps = 16/626 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R + +WVAKIFL L + F++ WG+ + + +++ G+ + ++ + Sbjct: 1 MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTYHLA 58 Query: 60 WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ + + + + + +L+ L D+ + + + Sbjct: 59 LADQSLRLALTSNLRRMFTPDEIQRYKIPFFVLNQLQQDVLFDEQARKMKINLSKDMIAR 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F + F+ D+F++ L + NE ++ +YTK R ++ + GMR ++ Sbjct: 119 IIGNDDIFQY-NRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAGMRAPDI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRTVSLFSI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 E K IS +E+Q Y +N ++ +PE R +E+L F ++ AD A + + +G F Sbjct: 238 TSEEFLKPQNISVNEIQTYYTQNTSRFITPEKRIIEELRFSTREAADNAAKKIAEGLSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L +E+ K+LSDI+ G ++ +P+ LA IF L KKG+ + VI+ G VI V +I Sbjct: 298 ALVKEEKKNLSDITRGPLAENELPN-HLASEIFEL-KKGEISAVINDLQGPVIIRVVHIT 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS + Q+V+ DI + A ++ Y +E G S+ E++++ K+ + Sbjct: 356 PSTQIPLQKVENDIRQTLAQNYAVTHLRNKYTEIENARFKGASLTELAKQYKLPHRKI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK +G + +P KE LL ++ + + D ++LP+G Y+W Q+ IPARDR Sbjct: 415 IDKTGKTTEGIILTDLPQKEVLLNAIYQSHEGIDVD-PLSLPEGGYLWYQVDTIIPARDR 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L EV + WK + + KA ++ + +K GK+ + LG TT + R Sbjct: 474 TLSEVKQNAIVQWKEEEIQRLLDEKAQDILKKLAK-GKSLDALATELGIIKQTTPALRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593 D ++ FG +G+ +F G + N + +V+K+T S V + Sbjct: 533 D-PSQIFGVEGVKALFYGTKDHYGVVKGVNATNRIVYKITTSIVPEDITAHTLSSDIRTN 591 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVH 619 + M+ +DL ++ +Y + ++ Sbjct: 592 IDTMIREDLKLEMLQAANKEYPIKIN 617 >gi|238795538|ref|ZP_04639053.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC 43969] gi|238720657|gb|EEQ12458.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC 43969] Length = 628 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 127/637 (19%), Positives = 272/637 (42%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKILLALIMLSFILTGVGSYLIGGSN-DYAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F DNKF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPI 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V ++ + + A ++ L ++++ K+++ APE ++S+I Sbjct: 179 EAQAMSELILQQREVRLATVDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A Y++++ Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHRSSYTQPERRNYSVIQFKTEAEAKVALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L++KG + V+ S GY+I +++I Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLSEKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGTKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 D+ +D EV P + + + G++ + V DG ++I P Sbjct: 417 QTDWFTRDSIPTEVNFKPVAQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K + +++ K+GK + K G S + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 +R ++++ + +F+ P V + + V+ ++ + G P E Sbjct: 535 SRAPDDDQL-----VQTIFTLPHPQKDQPVYGLSQDREDNIVLIELLSVTPGKLPEGEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L+ Q ++ + Q+ Sbjct: 590 TFIAKMQEGSSGVTFDALMANLRKQATIKMGPAEQQQ 626 >gi|311280662|ref|YP_003942893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae SCF1] gi|308749857|gb|ADO49609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae SCF1] Length = 624 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 128/640 (20%), Positives = 271/640 (42%), Gaps = 32/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L ++ V Q++ S F N+ Sbjct: 1 MMDSLRTAANSVVLKIIFGIIIVSFILTGVSSYLIG-GNNTYAAKVNSQEIGRSQFENAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ + +GL +V Sbjct: 60 ASERNRMQQQLGDRFSELAANENYMKTLRQQVLNRLIDEALLDQYAKHLGLAISDQQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F + KF +D F +++ G+ +Y L ++ VG Sbjct: 120 AIFQTQAFQS-NGKFDNDRFNGIVSQMGMTADQYAQALRNQLETQQLINAIVGTDFMLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +Q + R V +N + A S+ ++ ++E++K+ + +PE R+SYI Sbjct: 179 ETEQLATLVSQQRIVREATINVDALAAKQQVSDQEISSYYEQHKNEFVSPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S+ ++Q+ Y++++E++ PE + + +A +L KG F Sbjct: 239 DAAAMQE--TASDSDIQSYYDQHQEQFTQPERVRYSVIQTKTEADAKAVLDALSKGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G PD L +KG + VI S G+++A + Sbjct: 297 ALAKEKSADIISAKNGGDMGWLEASTTPD---ELKNAGLKEKGQLSGVITSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ EV+ DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDVQPAKEKPLAEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGAEQVAGM 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + G+D E+ P + + + G++ + + DG +V +I E Sbjct: 412 KAVETGWFGRDSLPSELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + L +V V K K ++ A++L+ E GK + K G S Sbjct: 472 KAEAVKPLADVKAQVTDIVKHTKAEQQAKLDADKLLAEL-NAGKG-DEAMKAAGLSFGPA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVG--PVQ 585 ++R + FS P+ G + V+ + K G P Sbjct: 530 TTLSRTGQD------PLSQTAFSLPLPQKDKPVYGVGSDMQGNVVLVSLDGVKDGTMPEA 583 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K ++ +TQ + +++++ L+ + + D + Q+ Sbjct: 584 QKKAMVAGITQNNAQIAFEAMMSNLRKDAKIKLGDIVTQQ 623 >gi|213622668|ref|ZP_03375451.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 599 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 118/614 (19%), Positives = 261/614 (42%), Gaps = 28/614 (4%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN---SERAR 81 F++ G+S L S + V Q++ + F N++ E + Q++G + + Sbjct: 1 FILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGY 59 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 L +++L+ L+ A LDQ+ ++ L +V I +P F D KF ++ + + + Sbjct: 60 MKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIV 118 Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 + G+ +Y L+ ++ G D+ + R V V++ Sbjct: 119 NQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNA 178 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + A ++ ++ ++++ K + PE R+SYI D + +S+ ++QA Y+++ Sbjct: 179 LAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHV 236 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSK 317 +++ PE + + +A +L KG+ F LA+E+ + + +G + Sbjct: 237 DQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEE 296 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 L ++ L +KG + VI S G+++A + +I+P+ EV+ DIA +++ Sbjct: 297 SATV-PELKNA--GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 353 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 KA + +++ + A + ++ E++ + + +D +E+ P + Sbjct: 354 EKALDAYYALQQKVSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVAD 411 Query: 438 QLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 + + G++ + + DG V++ E P + L EV V K K Sbjct: 412 AIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKA 471 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 ++ A +L++E K GK + K G S ++R + + S Sbjct: 472 EQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSL 525 Query: 556 PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 P + + + N + + V+ K G P +K + +TQ + + +++++ L+ Sbjct: 526 PTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLR 585 Query: 612 SQYSVTVHDNLIQR 625 + + + D L Q+ Sbjct: 586 KEAKIKIGDALEQQ 599 >gi|240850253|ref|YP_002971646.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup] gi|240267376|gb|ACS50964.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup] Length = 629 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 151/636 (23%), Positives = 316/636 (49%), Gaps = 16/636 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+IIR A+ +W+ +IFL +L + F++ WG+ +++ G+ V + + Sbjct: 1 MLDIIRNATNSWIFRIFLAILLLCFILLWGVPQ--LHKKSERDLITSGKSTVTVDDYRLA 58 Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ +G + + + + + + L LD+ + + + + Sbjct: 59 LADQSARLAYAAHLGRMFTANEMQQYQIPAFVFNQLQQNLLLDEQVRKMKISLSKDTIAH 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F + F ++F + L I+E ++++YTK R ++ + M+ NL Sbjct: 119 TIGSDKMFQ-VNGTFDKNLFYNYLQHLRISESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R DY+V++ + IADP + L +WF+ ++ +RAPEY+ +S + Sbjct: 178 FYKALALYQGEMRIADYLVIDLKEKETIADPDDEKLQKWFKTHQSQFRAPEYRTVSLLSM 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++++ K +IS DE +A Y +N ++ +PE RT E+L FP+++EAD A + + G F Sbjct: 238 ELNDFVKPKDISTDEAKAYYTQNASRFVTPEKRTFEELQFPSREEADNAAKKIADGLSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +L + + K+L+DI G ++ +P LA IF L ++G + VI+ G +I V++I+ Sbjct: 298 ELVKAENKTLNDIKKGPLAENELP-SHLASGIFEL-QQGQVSTVINDLQGPIIIRVTHIE 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS ++ F++V+++I + +A++ ++ +Y +E G S+ E++ + K+ + Sbjct: 356 PSSSLPFEKVEENIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKLSLRTI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK ++G + +P K+ LL ++ ++ + D ++ +G Y+W ++ + IPARD+ Sbjct: 415 IDKTGKTLEGAILTDLPQKDILLNAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 LEE DV WK+ + + KA L+ EGK+ + + LG + TT + R Sbjct: 474 TLEEAKLDVLSQWKSEEIQRLLDEKAQN-ALKQLTEGKSLVALARTLGVTKQTTPALRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593 D+ + G +GI +FS P + +++++ + P + + Sbjct: 533 DSSDP-LGVEGIKALFSAPKGHYGIIKGPVATNRIIYQIKTVTMPKDITPHTLSTEVRAN 591 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + M+ +DL ++ ++ + ++ + + Sbjct: 592 IDMMIREDLKLEMLQIANKEHPLEINSTNYNQIFNA 627 >gi|300022969|ref|YP_003755580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] gi|299524790|gb|ADJ23259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] Length = 628 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 294/632 (46%), Gaps = 12/632 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++T VAK+ +L V F IWG++D +F G V VG ++ F S+ Sbjct: 1 MLDAMRRGAQTPVAKLLFGLLCVSFAIWGVAD-VFQGWGRGFVAKVGHTEISAEEFRRSY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + EL IS++ +++E+ + GLD+++L +++GA ++ + +GL + I Sbjct: 60 QNELDRISRQSNQRLSAEQGHAFGLDRQVLAQMIAGAAIEAHADQLGLAISDKTLAEGIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D KF+ F L + G++E+ +++ K R +V + G LLD Sbjct: 120 ADPNFQ-TDGKFNRQGFEGLLQQIGMSEQGFLNLRRKDELRGAIVSALIKGQTVPKPLLD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + E R ++++ ++ V +A+P A L + +E K Y PEY+++ ++ Sbjct: 179 EIHAYNQEKRVLEWVKIDPAAV-TVAEPDEATLKKRYEDDKAKYMTPEYRKVQVLMLTPD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299 + +K I I++DE+ YE +K+ + +PE R V+Q+ F ++ A+ A ++L+ G K + Sbjct: 238 DLKKSITITDDEIAKAYEADKDSFNTPEQRRVQQIAFKDRATAETALKALRDGTKSLADV 297 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A+E G +D+ LG +K+ + D +AD FSL K ++ VI G F V+ V+ I+P Sbjct: 298 AKETGAKDTDVDLGLITKKSLIDPKVADVAFSLEKD-KYSDVIDGRFATVVVRVTQIEPG 356 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T + +VK+ + +++ K ++ +E+ G ++ E++ + ++ ++P D Sbjct: 357 TTKTLADVKEQVRDKLANDKVHGNLQSKRDDVEDARLAGKTLKEVADQLQLTYKEIPATD 416 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G GK V ++ R F D D + L + Y WV + + + + Sbjct: 417 VTGLGPDGKPVLETADIRKITARAFAPD--TGDDSAIDLTNDGYAWVNVLSTDAPKQKAY 474 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV VK+D+ + + + A +L + G+ I + T I R Sbjct: 475 DEVKDAVKQDYMSSEHHRLLDELAKKL-TDKVNAGEPIASIEAEAKGKVEKTEPITR-KT 532 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV---QEKDKFISYLTQ 596 ++Q F+ P + + +VF+V E D+ L Sbjct: 533 IPPSISQSMVAQAFALAKGKAGHGPSSDNTTEIVFRVAEVTPAAALTLTETDELTRRLED 592 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + L LK ++ +V+ ++ + Sbjct: 593 ELANQSLTEYTEALKKRFGASVNQAELKSAVG 624 >gi|238788012|ref|ZP_04631808.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC 33641] gi|238723960|gb|EEQ15604.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC 33641] Length = 628 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 127/637 (19%), Positives = 268/637 (42%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDDQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V ++ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 179 EAQAMSALILQQRDVRLATIDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ D++ A Y+++K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEDDIAAYYDQHKSSYGQPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L +KG + V+ S GY+I +++I Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYSLQQKVSE--AATSDNESLASAEEAAGTKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D +V P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPADVNFKPVIQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 +V V + K K + +++ K+GK + K G S + Sbjct: 477 GIEPFTQVRDQVAELVKRQKAEQVARVDGEKILTAL-KQGKG-DEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 +R ++++ + +F+ P +V + + V+ ++ + G P E Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQLVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L Q ++ + Q+ Sbjct: 590 TFIAKMQEGSSGVTFDALMANLHKQATIKMGPAEQQQ 626 >gi|319407091|emb|CBI80728.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. 1-1C] Length = 629 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 161/635 (25%), Positives = 311/635 (48%), Gaps = 16/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R + +WVAKIFL L + F++ WG+ + + +++ G+ + ++ + Sbjct: 1 MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTYHLA 58 Query: 60 WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ +G + + + + +L+ L D+ + + + Sbjct: 59 LADQSLRLALTSHLGRMFTPDEIQKYKIPFFVLNQLQQDVLFDEQARKMKINLSKDMIAR 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F + F+ D+F++ L + NE ++ +YTK R ++ + GMR ++ Sbjct: 119 IIGNDDIFQH-NRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAGMRAPDI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRTVSLFSI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 E K IS +E+Q Y +N ++ +PE R +E+L F ++ AD A + + +G F Sbjct: 238 TSEEFLKPQNISVNEIQTYYTQNASRFITPEKRIIEELRFSTREAADNAAKKIAEGLNFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L +E+ K+LSDI+ G + +P+ LA IF L KKG+ + VI+ G VI V++I Sbjct: 298 ALVKEEKKNLSDITRGPLEENELPN-HLASEIFEL-KKGEISAVINDLQGPVIIRVAHIT 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS + Q+V+ DI + A ++ Y +E G S+ E++++ K+ + Sbjct: 356 PSTQIPLQKVENDIRQTLAKNYAVTHLRNKYTEIENARFEGASLKELAKQYKLPHRKI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK +G + +P KE LL ++ + + D ++LP+G Y+W Q+ IPARDR Sbjct: 415 IDKTGKTTEGITLTDLPEKEVLLNAIYQSREGIDMD-PLSLPEGGYLWYQVDTIIPARDR 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L EV + WK + + KA ++ + +K GK+ + LG TT + R Sbjct: 474 TLSEVKQNAIFQWKEEEIQRLLDEKAQNILKQLAK-GKSLDALATELGIIKQTTPALQRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593 + ++ FG +G+ +F G + N + +V+K+T S + + Sbjct: 533 NR-SQIFGVEGVKALFYGTKDHYGVVKSVNAANRIVYKITASIIPKNITAHTLSPDIRTN 591 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + +M+ +DL ++ +Y + ++++ R + Sbjct: 592 IDKMIREDLKLEMLQVANKEYPIEINNSNYTRIFN 626 >gi|330859944|emb|CBX70273.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica W22703] Length = 628 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 127/637 (19%), Positives = 268/637 (42%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L +KG + V+ S GY+I ++ I Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP+ EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D E+ P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K + +L+ K+GK + K G S + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 +R ++++ + +F+ P V + + V+ ++ + G P E Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L+ Q ++ + Q+ Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626 >gi|238919016|ref|YP_002932530.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella ictaluri 93-146] gi|238868584|gb|ACR68295.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 626 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 117/640 (18%), Positives = 250/640 (39%), Gaps = 29/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEIGRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + L K++L ++ LDQ+ + + L +V Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN F + ++ +AR G++ Y + L ++ F Sbjct: 120 AIRAMPYFQS-DNHFDNAKYLDMVARLGLSPDTYAQLVRQQLVTQQLIQGFTATGFTLPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R V ++ + + S+A L ++++++ ++ APE ++ YI Sbjct: 179 EVNALAALTMQQRQVSLATIDISKLMPLQQVSDAELQGYYQQHQSSFIAPETVKVRYIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K+ +SN E+ A Y+++K + P + + EA L G F Sbjct: 239 DAAAINDKMTVSNAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAGQLASGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG +E PD L+ KGD + I S GY+I + Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEQETTPD---EIRAAKLSHKGDVSAPIASSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + I+P+ EV+ +IA++++ KA + +++ + A D ++ E + Sbjct: 356 NGIQPAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSD--AATNDNDSLAGAEDAAGV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D + + P + + +FG++ + V +G +V ++ E Sbjct: 414 KATETGWFSRDSVPQVLDFKPITQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + ++V V + K K + S +L+ + GK + K G Sbjct: 474 KPEAVKPFDQVRDQVTELLKRQKAIAQARSDGEKLLAAL-QAGKGEASL-KAAGLRFGAE 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585 + R + + VF+ P V + + + ++ G + Sbjct: 532 QTLTRASEDRQL-----TDTVFAMPHPQTDKPVYGISTDRHDNIALIRLNAVTAGHLSAE 586 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + F S + D+++ L+ + + + Sbjct: 587 QMKAFASQMLTGETGITFDALMDNLRDNAKIKLGAAADVQ 626 >gi|318604634|emb|CBY26132.1| peptidyl-prolyl cis-trans isomerase ppiD [Yersinia enterocolitica subsp. palearctica Y11] Length = 628 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 126/637 (19%), Positives = 267/637 (41%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L +KG + V+ S GY+I ++ I Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP+ EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D E+ P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K + +L+ K+GK + K G S + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVG--PVQEKD 588 +R ++++ + +F+ P + + V+ ++ + G P E Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPAYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L+ Q ++ + Q+ Sbjct: 590 SFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626 >gi|332160753|ref|YP_004297330.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664983|gb|ADZ41627.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 628 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 126/637 (19%), Positives = 267/637 (41%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L +KG + V+ S GY+I ++ I Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP+ EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D E+ P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K + +L+ K+GK + K G S + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVG--PVQEKD 588 +R ++++ + +F+ P + + V+ ++ + G P E Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPAYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L+ Q ++ + Q+ Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626 >gi|123443338|ref|YP_001007312.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090299|emb|CAL13165.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 628 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 270/637 (42%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 179 EAQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L +KG + V+ S GY+I +++I Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP+ EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D EV P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPAEVNFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K + +++ K+GK + K G S + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 +R ++++ + +F+ P V + + V+ ++ + G P E Sbjct: 535 SRAPDDDQL-----VQTIFALPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L+ Q ++ + Q+ Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626 >gi|269138352|ref|YP_003295052.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella tarda EIB202] gi|267984012|gb|ACY83841.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella tarda EIB202] gi|304558384|gb|ADM41048.1| Peptidyl-prolyl cis-trans isomerase PpiD [Edwardsiella tarda FL6-60] Length = 626 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 117/640 (18%), Positives = 249/640 (38%), Gaps = 29/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEIGRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + L K++L ++ LDQ+ + + L +V Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAQKLNLAISDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN F + ++ +AR G++ Y + L ++ F Sbjct: 120 AIRAMPYFQ-TDNHFDNAKYLDMVARLGLSPDAYAQLMRQQLVTQQLIQGFTATGFTLPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + R V ++ + S+A L ++++++ ++ APE ++ YI Sbjct: 179 EVDALAALTMQQRQVSLATIDISKLMPQQQVSDAELQGYYQQHQSSFIAPEAVKVRYIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K+ +S+ E+ A Y+++K + P + + EA L G F Sbjct: 239 DAAAINDKMTVSDAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAAQLANGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG E PD L+ KGD + I S GY+I + Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEPETTPD---EIRAAKLSHKGDVSAPIASSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++++P+ EV+ +IA++++ KA + +++ + A D ++ E + Sbjct: 356 NDMQPAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSD--AATNDNDSLAGAEDAAGV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D + + P + + +FG++ + V +G +++ E Sbjct: 414 KATETGWFARDNVPQVLNFKPVVQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + EV V + K K + S+ +L+ + GK K G S Sbjct: 474 KPEAVKPFAEVRDQVTELLKRQKAIAQARSEGEKLLAAL-QAGKG-DAALKAAGLSFGAE 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585 + R + + VF+ P V + + + ++ G + Sbjct: 532 QTLTRASEDRQL-----TDTVFAMPHPQTDKPVYGLSADRHDNIELIRLNAVTAGHLSAE 586 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + F S + D+++ L++ + + + Sbjct: 587 QMKAFASQMLTGETGITFDALMDNLRANAKIKLGAAADVQ 626 >gi|261253455|ref|ZP_05946028.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP 102891] gi|260936846|gb|EEX92835.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP 102891] Length = 619 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 133/632 (21%), Positives = 258/632 (40%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + S +T VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NTAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ + K +LD +V+ L+Q E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDVLLEQHAESLGLRVSDTQVRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ + L R G N + + ++ + L R ++ G Sbjct: 120 LILEMPQFQ-IDGKFDQEIYQTALRRAGFNAESFAEYLRRDLVRNQLLTAIQGSDFTLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V + L+ A A S + ++++ + Y PE +++YI Sbjct: 179 EVEAQSKLLTQTREVKKVTLSLEDFAAKAQLSEDEINDYYKQNPERYTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I++S ++ + Y+++ +KY S E R V ++ +Q +A L G Sbjct: 239 SAQQLKDDIQVSEEQAKQYYQEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ SLG ++ + D + D+ F+L K GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEDAAFALTKVGDTTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S + EV +I +++ +A ++ E LE+ S+D+ ++ Sbjct: 358 KLDELKDSVAKPYAEVAAEIKQELKDQQAVDQYYELQSELEKVAFEYPDSLDDAAQAINA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + V E+ P Q + K+D L+ + + + V++++ Sbjct: 418 KIHTTDFISQ----VDAPELLKTPAVLQAIVSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L +V V VK + A++LV E KEGK + + K G Sbjct: 473 ARDEMVLPLADVREQVTTTLAKVKGEQSAIELADKLVAEL-KEGK--QGLLKESGLVFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIE---NGLSYVVFKVTNSKVGPVQ 585 T ++R VFS P E F NG VV S + Sbjct: 530 TETVDR--------SSPLADVVFSMVKPEEGKVEFAQAKDLNGDIVVVELTDVSSMFNTM 581 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ +TQ + L +I+ L+ + Sbjct: 582 YNEQIAQQMTQANAQQDLSGLISILRKTIDIE 613 >gi|326622155|gb|EGE28500.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 611 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 117/612 (19%), Positives = 258/612 (42%), Gaps = 28/612 (4%) Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN---SERARSV 83 + G+S L S + V Q + + F N++ E + Q++G + + Sbjct: 15 LTGVSGYLIGGSN-NYAAKVNGQGISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMK 73 Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 L +++L+ L+ A LDQ+ ++ L +V I +P F D KF ++ + + + + Sbjct: 74 SLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVNQ 132 Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 G+ +Y L+ ++ G D+ + R V V++ + Sbjct: 133 MGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALA 192 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 A ++ ++ ++++ K + PE R+SYI D + +S+ ++QA Y+++ ++ Sbjct: 193 AKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQ 250 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEY 319 + PE + + +A +L KG+ F LA+E+ + + +G + Sbjct: 251 FTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESA 310 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 L ++ L +KG + VI S G+++A + +I+P+ EV+ DIA +++ K Sbjct: 311 TV-PELKNA--GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEK 367 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A + +++ + A + ++ E++ + + +D +E+ P + + Sbjct: 368 ALDAYYALQQKVSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAI 425 Query: 440 LF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + G++ + + DG V++ E P + L EV V K K + Sbjct: 426 FNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQ 485 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 + A +L++E K GK + K G S ++R + + S P Sbjct: 486 QAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPT 539 Query: 558 EMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613 + + + N + + V+ K G P +K + +TQ + + +++++ L+ + Sbjct: 540 KDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKE 599 Query: 614 YSVTVHDNLIQR 625 + + D L Q+ Sbjct: 600 AKIKIGDALEQQ 611 >gi|83310913|ref|YP_421177.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] gi|82945754|dbj|BAE50618.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] Length = 623 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 283/627 (45%), Gaps = 8/627 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++ R AS+TW+ ++ +L + F+ WG D + G S + +GR + + + + Sbjct: 1 MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGRTSMSAAEVMGEF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K+E+ + G + +E AR +G+ + +D+L++ +D+ +GL A + +A Sbjct: 61 KREVERLQPLFGGKLTAEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G +F D+F SRL+R G E ++ + R +V G+ L D Sbjct: 121 SNPAFKGPTGQFDRDLFRSRLSRLGHTEDSFMKTERTNMVRNQMVETVAAGIGAPQALTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + ++ + P A P AVL +++ + APE++ ++ +L Sbjct: 181 PLLAWREERRVAETFLIKDESTPLPAAPDAAVLEAYYKDNVSRFMAPEFRALTVLLLRPS 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I+I + ++ Y + E++ +PE R V Q+VF A +A + GK +A Sbjct: 241 DVAGGIDIDEEMVRDAYRQRIEEFSTPERRAVSQIVFDESSAAAKATDLVTGGKDLATIA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + I LG K +P+ LA+++F L+ G + + + G+ + VS I+P Sbjct: 301 KALNSEI--IDLGVIEKNDLPE-GLAEAVFKLSS-GATSQPVKTALGWHVVKVSQIQPGR 356 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF EVK + MR KA++ + E R+E+ L G +++E ++R + ++ + VD Sbjct: 357 TRSFDEVKAQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTVKIAAVDA 416 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G+ GK VA +P +Q L F D T +P+ Y + + + L Sbjct: 417 QGRGADGKPVADLPKSDQFLDVAFHTDQNTESPLT-EVPNNGYFLLHVDGVTAPAPKPLA 475 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 E+ ++V W+ + E+ KA +L + K G+ + + GA L T+ R E Sbjct: 476 EIRSEVVATWQAERRQEQARDKALKL-ADRIKVGEGIAQVALSAGAKLETSKPFVREPAE 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMM 598 I+++F + P++ G VT ++Q + Sbjct: 535 GTALPATIIAELFKAQPGGIATAPVQGGTLVARLAKVVTFDTNANPALTQAARQRVSQAV 594 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQR 625 D+ D IA L + V V + R Sbjct: 595 ATDIADQYIAALNASIGVKVDRPQLTR 621 >gi|238764856|ref|ZP_04625797.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC 33638] gi|238696963|gb|EEP89739.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC 33638] Length = 627 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 129/636 (20%), Positives = 266/636 (41%), Gaps = 23/636 (3%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRGQLEQAVQ 59 Query: 62 QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 SERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I ++P F D KF + ++ + R G ++ + L ++ F + Sbjct: 120 IRQAPYFQ-TDGKFDNSKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIE 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + R V L+ + + A ++ L ++++ K+++ APE +IS+I D Sbjct: 179 AQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + KI I+ +++ A YE++K Y PE R + F + EA A LKKG F Sbjct: 239 AAAMQDKITITEEDIAAYYEQHKSTYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 298 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +A+E+ + G P+ + + +L +KG + V+ S GY+I +++IK Sbjct: 299 MAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 358 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P+ EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAKQ 416 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPAR 475 + +D EV P + + + G++ + V DG ++I P Sbjct: 417 TGWFTRDTVPTEVNFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPEG 476 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 ++V V + K K + ++ K+GK + K G S ++ Sbjct: 477 IEPFDQVRDQVAELVKRQKAEQLARIDGENILTAL-KQGKG-EEAMKAAGISFGEKKTLS 534 Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDK 589 R ++++ + +FS P V + + V+ ++ + G P E Sbjct: 535 RAPDDDQL-----VQTIFSLPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKT 589 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 F++ + + + D+++A L+ Q ++ + Q+ Sbjct: 590 FVAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 625 >gi|238759258|ref|ZP_04620425.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236] gi|238702545|gb|EEP95095.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236] Length = 628 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 126/636 (19%), Positives = 267/636 (41%), Gaps = 19/636 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q + + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNGQDISRAQLEQAM 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAQKLGLSASDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F DNKF ++ ++ + R G +++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPEQFAQLQRQQLINQQLLQAFGDTGFVLPI 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V ++ + + A ++ L ++E+ K+++ APE ++S+I Sbjct: 179 EAQAMSELILQQRDVRLATIDLKALQAQQKVTDEELKAYYEQNKNSFIAPEQMKVSFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A YE++K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITVTEEDIAAYYEQHKSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G P+ + + +L +KG + V+ S GY+I +++I Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP EV + +A Q++ KA + +++ E A + + ++ E++ Sbjct: 359 KPELVKPLSEVHEALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEVAGAKAQ 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D EV P + + + G+ + V DG ++I P Sbjct: 417 QTGWFTRDAVPTEVNFKPVVQAIFDGGLVGESGAPGSNSDVITVDGDRAFVIRIVGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K +E +++ K+GK + K G + + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQEARLDGEKILTAL-KQGKG-EEAMKAAGLTFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKF 590 +R + ++ + P + + + + V+ ++ + G P E F Sbjct: 535 SRAPDGDRLVQTIF---ALAHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKTF 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + + + D+++A L Q ++ + Q+ Sbjct: 592 TAKMAEGASNVTFDALMANLHKQATIKMGPAEQQQA 627 >gi|323498280|ref|ZP_08103282.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM 21326] gi|323316708|gb|EGA69717.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM 21326] Length = 619 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 131/632 (20%), Positives = 254/632 (40%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + +G +T VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAG-NTAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ + K +LD +V+ ++Q E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLIEQHAETLGLRVSDAQVRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF D++ + L R G + + ++ + L R ++ Sbjct: 120 MIVEMPQFQ-ADGKFDQDIYQASLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLAA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V+ + L A S + ++E+ Y PE +++YI Sbjct: 179 EVEAQAKLLTQTREVETLTLPLSDFAAKVKLSEEDIQAYYEQNPQRYTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I IS ++ + Y+++ +KY S E R V ++ +Q +A L G Sbjct: 239 AAQQLKDAITISEEQAKKYYDEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ SLG ++ + D + ++ F L G+ T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFGLNNVGEVTELVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S + EV +I +++ +A ++ E LE+ S+D+ + Sbjct: 358 KLDELKASVAKPYTEVAAEIKQELKDQQAIDQFYELQSELEKVAFEFPDSLDDAANAVDA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + A E+ P Q + K+D L+ + + + V++++ Sbjct: 418 KIETTDFISQA----DAPELLKTPAVLQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEEV T V + VK + A++LV E KEGK + + + + T Sbjct: 473 ARDETVLPLEEVRTQVTETLAKVKGEQSAIELADKLVAEL-KEGK--QQLLEENDLAFGT 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-----NGLSYVVFKVTNSKVGPVQ 585 + ++R +FS P NG VV S Q Sbjct: 530 SETVDR--------SSPLADVIFSMPKPAEGQVEYAQAKQINGDIAVVKLAKVSDQFDEQ 581 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + S LTQM + L +I+ L+ + Sbjct: 582 YNTQIGSQLTQMNAQQDLTGLISILRKTTDIE 613 >gi|328473322|gb|EGF44170.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus 10329] Length = 619 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 115/630 (18%), Positives = 261/630 (41%), Gaps = 30/630 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L + S ++ VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R ++ Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R + + ++ + ++ + +++ DN+ PE ++SY+ Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +K+I++++++++ Y+++ +KY S E R V ++ ++ +A L G Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNSGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + + LG ++ + D + ++ F+L GD + ++ FGY I Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K + F EV +I ++ KA ++ E LE S+D+ S K Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ ++ DF + V EV Q L K+D L+ + + + V++++ Sbjct: 415 INQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S L EV V + VK + ++V ++ + + Sbjct: 473 SRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG-PVQEK 587 ++R + PV+ + L + VV ++ K + Sbjct: 530 QETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIVVIELDAVKAELDSSLE 583 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 D+ + + ++ L SV+A L++ + Sbjct: 584 DQVAMQMQRASSQQDLSSVLAVLRANTDIE 613 >gi|91228613|ref|ZP_01262531.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01] gi|269965576|ref|ZP_06179690.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B] gi|91187845|gb|EAS74159.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01] gi|269829801|gb|EEZ84036.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B] Length = 619 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 119/629 (18%), Positives = 262/629 (41%), Gaps = 28/629 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + S ++ VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R ++ Sbjct: 120 MILDMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R + I ++ + ++ + ++++ DN+ PE ++SYI Sbjct: 179 EVQAEGKLFTQTRDIRTIQIDLAEFAKNIELTDEEIQEYYKANPDNFTRPEQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 ++++ +S+ E++ Y+++ KY S E R V ++ ++ +A L G Sbjct: 239 SAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ G + + LG ++ + D + ++ F+L GD + ++ FGY I Sbjct: 299 FATLAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDTSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + +K S F+EV +I +M +A ++ E LE D + + V Sbjct: 358 KLEELKDSVAKPFEEVAAEIKQEMVDQQAIDQFYELQNELERVAFE--YPDSLYDASQAV 415 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + ++ DF + V EV P Q + K+D L+ + + + V+++++ Sbjct: 416 NQEVKTTDFISQ-VDAPEVLRSPAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVEDA 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 LEEV V + VK +E Q+V KEGK ++ + Sbjct: 474 RDETVLPLEEVKDQVVAELSRVKGEQEAMELGTQVVAAL-KEGKT--NVLAENNLAFGEQ 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589 ++R + PV+ + L + ++ ++ E + Sbjct: 531 ETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIIIIELDAVNAELDSELED 584 Query: 590 FIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + + ++ L SV+A L++ + Sbjct: 585 QVAMQMQRASSQQDLSSVLAVLRANTDIE 613 >gi|28897695|ref|NP_797300.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD 2210633] gi|260878350|ref|ZP_05890705.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus AN-5034] gi|260898294|ref|ZP_05906790.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus Peru-466] gi|260901515|ref|ZP_05909910.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037] gi|28805908|dbj|BAC59184.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD 2210633] gi|308088424|gb|EFO38119.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus Peru-466] gi|308092760|gb|EFO42455.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus AN-5034] gi|308110873|gb|EFO48413.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037] Length = 619 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 115/630 (18%), Positives = 261/630 (41%), Gaps = 30/630 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L + S ++ VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R ++ Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R + + ++ + ++ + +++ DN+ PE ++SY+ Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +K+I++++++++ Y+++ +KY S E R V ++ ++ +A L G Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + + LG ++ + D + ++ F+L GD + ++ FGY I Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K + F EV +I ++ KA ++ E LE S+D+ S K Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ ++ DF + V EV Q L K+D L+ + + + V++++ Sbjct: 415 INQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S L EV V + VK + ++V ++ + + Sbjct: 473 SRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG-PVQEK 587 ++R + PV+ + L + VV ++ K + Sbjct: 530 QETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIVVIELDAVKAELDSSLE 583 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 D+ + + ++ L SV+A L++ + Sbjct: 584 DQVAMQMQRASSQQDLSSVLAVLRANTDIE 613 >gi|262394811|ref|YP_003286665.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25] gi|262338405|gb|ACY52200.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25] Length = 619 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 119/629 (18%), Positives = 264/629 (41%), Gaps = 28/629 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + S +++ VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVS-GNNNSAAKVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R ++ Sbjct: 120 MILDMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R + I ++ + ++ + Q+++ DN+ PE +++YI Sbjct: 179 EVQAEGKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 ++++ +S+ E++ Y+++ KY S E R V ++ ++ +A L G Sbjct: 239 SAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ G + + LG ++ + D + ++ F+L GD + ++ FGY I Sbjct: 299 FATLAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDTSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + +K S F+EV +I +M +A ++ E LE D + + V Sbjct: 358 KLEELKDSVAKPFEEVAAEIKQEMVDQQAVDQFYELQSELERVAFE--YPDSLYDASQAV 415 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + ++ DF + V EV P Q + K+D L+ + + + V+++++ Sbjct: 416 NQEVKTTDFISQ-VDAPEVLRNPAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVEDA 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 LEEV V + VK ++ Q+V KEGK D+ + Sbjct: 474 RDETVLPLEEVKDQVIAELSRVKGEQDAMELGTQVVAAL-KEGKT--DVLTENNLAFGEQ 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKDK 589 ++R + PV+ + L + V+ ++ + ++ Sbjct: 531 ETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGNIVIIELDAVNAELDSDLEE 584 Query: 590 FIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + + ++ L SV+A L++ + Sbjct: 585 QVAMQMQRASSQQDLSSVLAVLRANTDIE 613 >gi|227113469|ref|ZP_03827125.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 626 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 129/640 (20%), Positives = 265/640 (41%), Gaps = 30/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + S L ++ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN+F ++ ++ ++ R G+ Y K L+ ++ F Sbjct: 120 AIFDVPAFQ-TDNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + ++R V ++ ++ + ++++ K N+ APE ++SYI Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEIQSYYDQNKGNFIAPEEFKVSYITL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D +++ + + YE+NK Y PE + + N+ +A +LK+G F Sbjct: 239 DAASIMDGVKVDDAAINDFYEQNKSGYSQPERKKFSVIQVKNEADAASVLDALKQGGDFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG + + D L +KG + I S GY+I + Sbjct: 299 TLAKEKSTDVISRRNGGDLGWMDENSMID---ELKQAKLTEKGQVSEAIKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P EV+ +IA +++ KA + +++ E A + ++ E+ + Sbjct: 356 DDVQPQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSE--AASNDNESLASAEEAAGV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ ++ + P + + + G++ + V DG +V +I E Sbjct: 414 KATQTDWFTREKVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRAFVLRITEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P R L++V T++ + K K ++ A +++ E K+GK+ + K G S Sbjct: 474 KPESTRPLDQVRTEIVETLKRQKAEQQTRVDAEKILAEL-KQGKD--EALKAAGLSFGEA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ---- 585 ++ + G +F+ P + + I + V V V P Q Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPEKDKPSYAITQDQAGNVVLVALDSVTPHQLNDE 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K +F S + Q L DS+++ L+S+ + + + ++ Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625 >gi|296446388|ref|ZP_06888333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] gi|296256161|gb|EFH03243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] Length = 635 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 171/641 (26%), Positives = 305/641 (47%), Gaps = 18/641 (2%) Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 MLE +R AS+ + ++ L + + + F +WG+ D S + VG ++ ++ Sbjct: 1 MLEGLRIASQHRIGRVILGIVMGFIALSFAVWGIGDVFRGFSTKR-LAKVGSGEITVEAY 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ EL + Q+ + +E AR GLD+++L +++ TLDQ +GL V Sbjct: 60 RGAYQNELRRLQQRARRAITNEEARRYGLDEQVLQRMITELTLDQKARALGLAIGDPDVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 + +F G KF D F L G E+ ++ R ++ VG M P Sbjct: 120 KLVRDENVFKGPTGKFDSDRFKQILRDAGYTERSFLAEQKSGYVRKELTDSVVGAMEPPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+L+ RF E R VDY L IA PS L ++FE + ++RA EY+R+ + Sbjct: 180 LVLEALHRFRNEARDVDYFELPAAAAGEIAAPSEEELKKYFEDREQSFRAKEYRRLVILA 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 K E+S +E + Y++ K ++Y + E R + QL+F + EAD A + L+ G Sbjct: 240 ATPASLAKPQEVSEEEARKLYDEVKTKRYGTAEKRHLRQLLFAAKDEADAALKRLEGGLS 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F LA E+ + DI LG + + ++ L+D +F+ K G F + +FGY I + Sbjct: 300 FEALATERKLATKDIDLGLLEAKDLGEIKLSDKVFAPEKPG-FVGPVQTAFGYAILEIEK 358 Query: 356 IKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 I PS SF++ + ++ ++ +A+ +V++ + +E+ A G ++ E ++ + + Sbjct: 359 IVPSVVTRSFEQTRDELRGEIARERAAPQVQKVHDAIEDQRAGGKALAEAAKSLGLEVVA 418 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + D +G+D G+E+ ++ E LL F D + D TVA DG Y+W ++ + PA Sbjct: 419 VEATDASGRDKAGQEIPSVFGSEDLLKAAFASDVGVDND-TVATRDGGYLWFEVAKVEPA 477 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R R EE +V+ + + + +++KA+ L E + GK D+ K+ GA N + Sbjct: 478 RQRSFEEAKPNVEIAVREERLQKALAAKADALAAEL-RAGKTIADVAKSAGAESRRANDV 536 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590 R N I VF PV ++ G +VF+V N+ P E Sbjct: 537 KR--APNPAIPNAAIIAVFDTPVHGAGSVAVDGG--RLVFRVENATTQPYDASSLEAKAA 592 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 + D+L+ + L+ Y+V+++ ++ GE+ Sbjct: 593 AEQMKPAFTNDILEQYVGALEKIYNVSINQKALEAATGGEQ 633 >gi|46201422|ref|ZP_00055089.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 623 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 154/629 (24%), Positives = 287/629 (45%), Gaps = 12/629 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++ R AS+TW+ ++ +L + F+ WG D + G S + +G + + + + Sbjct: 1 MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGHTSMSATEVMGEF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K+E+ + G + E AR +G+ + +D+L++ +D+ +GL A + +A Sbjct: 61 KREVERLQPLFGGKLTPEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F G +F D+F SRLAR G E ++ + R +V G+ L + Sbjct: 121 SNPAFKGPTGQFERDIFRSRLARVGHTEDSFMKAERTNMVRNQMVETVAAGISAPQALTN 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + V+ + P A P A L +++ + APEY+ ++ +L Sbjct: 181 PLLAWREERRVAETFVIRDESTPLPAAPDAASLDAYYKDNLSRFMAPEYRALTVLLLRPA 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I+I + ++ Y++ E++ +PE RTV Q+VF A +A + GK +A Sbjct: 241 DVANAIDIDEEMVRETYQQRIEEFSTPERRTVSQIVFDESSAAAKATDMVTGGKDLAAVA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + I LG K +P+ LA+++F L + G + + G+ + V+ ++P Sbjct: 301 KALNTDI--IELGIVEKNDLPE-GLAEAVFKL-RAGATGQPVKTALGWHVVKVTQVQPGR 356 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF EVK + MR KA++ + E R+E+ L G +++E ++R + ++ + VD Sbjct: 357 TRSFDEVKVQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTMKIAAVDA 416 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G+ GK VA +P +Q L F D T +P+ Y +++ R L Sbjct: 417 QGRGANGKPVADLPKSDQFLDVAFHTDQNTESPLT-EVPNNGYFLLRVDGVTAPAPRPLA 475 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 ++ DV W+ + E+ KA +L + K G++ + ++ GA L T+ R E Sbjct: 476 DIKADVVATWQAERRQEQARDKALKL-ADRIKAGESASQVAQSAGAKLETSKPFIREPGE 534 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQ 596 I+++F V P++ G VV ++ + + ++Q Sbjct: 535 GSSLPPTIIAELFKAQPGGVATAPVQGGT--VVARLNSVIAFDINANPALTQAARQRVSQ 592 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + D+ D IA L + V V + R Sbjct: 593 AVATDIADQYIAALNASIGVKVDRPQLTR 621 >gi|37679292|ref|NP_933901.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016] gi|37198035|dbj|BAC93872.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016] Length = 625 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 132/628 (21%), Positives = 256/628 (40%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L S S S++ VG ++ F ++ Sbjct: 7 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGS-SNSAAKVGNVEIGRGEFEMAY 65 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 66 QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 125 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +D KF+ DV+ + L R G + + ++ + L R+ ++ Sbjct: 126 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 184 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + + R V + LN R + + +++++ K + PE ++SYI Sbjct: 185 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 244 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L G Sbjct: 245 AADSLKQQITISDDEVKQYYQEHLDKYSSEEKRRVAHILIEGDDQAKAQAILDELNAGAD 304 Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+++ LG + + D + ++ F+L GD T ++ FGY I Sbjct: 305 FAALAQDKSDDFGSADNGGELGWIERG-VMDPAFEEAAFALKNVGDVTGLVKSDFGYHII 363 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K F +V I +M KA ++ E LE+ S++E S K Sbjct: 364 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS---KA 420 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V + DF + V E+ P Q + K D L+ + + + V++ + Sbjct: 421 VGQQVKHTDFISQ-VDAPEILRTPAVTQAITSPEVKLDGLN-SEAIEIAPEHIIVVRVDD 478 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L EV V + VK ++ ++V K G I + G S Sbjct: 479 ARDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTAL-KAGNT--AILQEKGLSFGE 535 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 +I+R + + K + VV + + + Sbjct: 536 LEKIDRRSPLAQTVFAMAKPAAGNAVYGQSKDMEG----NVVVVALEKVEESLEPVLAQQ 591 Query: 591 IS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 IS L ++ + L S++A L++ + Sbjct: 592 ISVQLQRVSAQRDLSSIVAILRANTDIE 619 >gi|253687447|ref|YP_003016637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754025|gb|ACT12101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 626 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 129/640 (20%), Positives = 265/640 (41%), Gaps = 30/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + S L ++ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQEALGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ ++ ++ R G+ Y K L+ ++ F Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNSSFLLPQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + ++R V ++ ++ + ++++ K N+ APE ++SYI Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D +++ + + YE+NK Y PE + + N+ +A +LK+G F Sbjct: 239 DAASIMDGVKVDDAAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG + + D L +KG + I S GY+I + Sbjct: 299 TLAKEKSTDIISRRNGGDLGWMDENSMID---ELKQAKLTEKGQISAAIKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P EV+ +IA +++ KA + +++ E A + ++ E+ + Sbjct: 356 DDVQPQQIKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSE--AASNDNESLASAEEAAGV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ ++ + P + + + G++ + V DG +V +I E Sbjct: 414 KATQTDWFTREKVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRAFVLRITEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P R L++V T++ + K K ++ A +++ E K+GK+ D K G S Sbjct: 474 KPESTRPLDQVRTEIVETLKRQKAEQQARLDAEKILAEL-KQGKD--DALKAAGLSFGEA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ---- 585 ++ + G +F+ P + + I + V V V P Q Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPEKDKSSYAIAQDQAGNVVLVALDSVTPHQLNDE 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K +F S + Q L DS+++ L+S+ + + + ++ Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625 >gi|288958078|ref|YP_003448419.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510] gi|288910386|dbj|BAI71875.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510] Length = 626 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 152/634 (23%), Positives = 291/634 (45%), Gaps = 12/634 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + +WV KI V+L + F IWG+ D +F S +TV VG+ ++ + + Sbjct: 1 MLQFIRNFAGSWVVKILFVLLILSFGIWGIGD-VFRSSTPTTVAEVGKVEIGQQALDQEF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + +G + +++A+ GL ++ L +L+ D D+G+ V IA Sbjct: 60 RRQMERLRPMLGGNLTTDQAKRFGLLEQSLQSLIQRTLFDLAATDMGIAVGPEVVRLRIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + KF ++F S L + E Y+ + +R V G G+ P L+ Sbjct: 120 DEPAFRNQQGKFDPNIFRSVLRNNQLTEDGYVAMIQRETARQLVAGAVSAGLAPPQPLVQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 RF E R + + L N + + P +A + Q +E ++ + APEY+ ++ Sbjct: 180 DLYRFRGEKRVAEVVTLPNASIGDVGAPDDAAIKQAYEDHQVRFTAPEYRALTVARLSPD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K I+I + +L+ YE+ ++ +PE RTV+ +V ++ +A ++ K K + A Sbjct: 240 ALAKDIKIDDAQLRKAYEERANEFGAPEKRTVQMVVVDDEAKAKRIAEA-AKAKGLAEAA 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +E G + +SL + K +P+ + D+ F+L + G + I + G+ + V+ + P+ Sbjct: 299 KETG--VEPVSLDNIGKADLPE--IGDAAFAL-EPGKPSDAIKSALGWHVMAVTGVTPAS 353 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF++V+ +A +M+ +A + V R+E+ LA G S++E+++ + +V + +D Sbjct: 354 TKSFEDVRDQLAAEMKKEQALDSVFSIANRVEDQLASGASLEEVAQAQGLVLTKVAAIDS 413 Query: 421 AGKDVKGKEVA-AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 GK GK+ A +P + LL F + + GS++ V++ IPA R L Sbjct: 414 TGKAPDGKDAAPDLPALKALLPNAFQL-KAGATSNLTEGEGGSFIAVRVDSVIPAAVRPL 472 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR-DIGKNLGASLLTTNQINRMD 538 +V V DW+ + + + KA ++ + + D+ GAS T R Sbjct: 473 ADVRDQVIADWQQEQRNDRAAKKAEEIATRLKQGAEAAAQDVATQAGASFAMTAPFTRDA 532 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KFISYLTQ 596 + D ++++F+ V + K + D + + Q Sbjct: 533 QTVQGLPGDMVAKLFTAKPNEVISGNSADAQVIARLKEIIPADPKAADADLAAVRASVEQ 592 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 M DL+ L+ +Y V +H I ++ Sbjct: 593 GMEGDLMAEFTNALRDKYPVRIHRQRIDQFFASN 626 >gi|319408341|emb|CBI81994.1| conserved exported hypothetical protein [Bartonella schoenbuchensis R1] Length = 628 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 156/635 (24%), Positives = 299/635 (47%), Gaps = 16/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R A +W A++F +L + F+ WG+ G +++ G+ + ++ + Sbjct: 1 MLDTLRSAKNSWFARLFFAILLLCFIFLWGIPQLY--TQGERDLLTSGKSTITVDTYRLA 58 Query: 60 WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ +G + E + + +L+ L ++ + + + Sbjct: 59 LADQSLRLALNSHLGRMFTPEEIQQYRISAFVLNQLQQDVLFNEQARKMKINLSKDMIAQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I+ +F ++ FS D+F++ L + +N+ ++ D+YT+ R + + GM+ +L Sbjct: 119 AISADNIFQ-ENGAFSRDLFLNFLQQLRVNQNDFFDYYTQKEKRNQLTLALLSGMKVPDL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R DY ++N + + ADP L +WF+ +K+ +RAPEY+ +S + Sbjct: 178 FYKAFAIYQEETRIADYFIVNLKEKESTADPDQKTLQKWFDTHKNAFRAPEYRTVSLLSI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + +IS DE + Y +N ++ +PE R +E+L FP +K ADEA + + G F Sbjct: 238 TPEKLVQLEDISKDEAKTYYTQNISRFTTPEKRIIEELRFPTRKAADEAAKKIADGLSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L + + K+L+DI G K P+ L IF L KKG + VI G VI V +I Sbjct: 298 DLVKAEKKTLNDIKKGPLVKSERPNY-LESEIFEL-KKGQVSTVIDDLQGPVIIRVIDIT 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS + F+ V+K+I + +A+ + Y +E G S+ EI+ + + + Sbjct: 356 PSSPIPFETVEKNIRQTLAQNRAATDMHNKYTEIENARFEGASLKEIADQYNLPLRKV-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D G ++G + +P K+ LL ++ + D ++L +G Y+W Q+ IP+RDR Sbjct: 415 IDKKGITIEGITLTDLPEKDILLDAIYQANVETEPD-LLSLQEGGYLWYQVDTIIPSRDR 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 LEEV D WK+ + + KA + + +K GK+ + G TT + R Sbjct: 474 ALEEVKQDAIAQWKSEEIQRLLDEKAENALKQLNK-GKSLDSLAAEFGVKKQTTQALRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ- 596 D+ ++ FG++ I +FS P + +V+K+T S + S + Sbjct: 533 DS-SEVFGFEDIKALFSKPKGHYGIAKGTLTTNRIVYKITASAIPDNITAQTISSDVRNN 591 Query: 597 ---MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 M+ +DL ++ ++ V ++++ R + Sbjct: 592 LDMMIREDLKLEILQVANKEHPVKINNSNYNRIFN 626 >gi|209963457|ref|YP_002296372.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum centenum SW] gi|209956923|gb|ACI97559.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum centenum SW] Length = 622 Score = 432 bits (1110), Expect = e-118, Method: Composition-based stats. Identities = 135/624 (21%), Positives = 253/624 (40%), Gaps = 8/624 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + +W+AKI ++L F +WG+ D + V VG ++ + Sbjct: 1 MLQAIRSTAGSWIAKILFILLIASFAVWGIGDFTRGLG--RHVAEVGDVQITPQELDQEF 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ + + +G + +E+AR+ GL ++ L +V + +D GL V EI Sbjct: 59 RDEVTRLRRVMGADLTAEQARAFGLLERTLQQMVQRTLVSLAGQDKGLMPSDAMVADEIR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R P+FH + +F D+ + L + G+ E+ ++ ++R ++G G L + Sbjct: 119 RVPVFHNQLGQFDPDLMRALLRQNGMTEQGLVEQVRADMARGQLLGSVSIGAILPTTLAE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 RF E R D I + +P A P +VL Q+ + Y APEY+ ++ Sbjct: 179 TLFRFRNEKRVADLITVPATAMPEPAAPDASVLAQYHQDRAVRYTAPEYRSLTVAKLTAE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 I +S+ +++ Y ++ +PE R V Q V P++ A ++ G Q Sbjct: 239 AIAGDITVSDADIEQAYSARASEFVAPERRAVVQAVLPDEAAAKSVADAVAGGASLEQ-- 296 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + I LG +++ + L + +F L++ G + + + G+ + V I P Sbjct: 297 AAKAAAAEAIDLGEVTRDQLL-PELVEPVFGLSQ-GAISAPVESTLGWHVLTVRGITPGH 354 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV+ + +R +A +++ E ++++ LA G +++E ++R + + VD Sbjct: 355 ERPLAEVRDQVVADLRKERALDRLYEVANQMDDDLAGGATLEEAAQRAGAEIVRIEAVDS 414 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G G V +P Q+L F H Y V++ PA + LE Sbjct: 415 RGTTPAGTPVQDVPALPQVLETAFALPSG-ETGHMTETDAQGYFAVRVDGVQPAALKPLE 473 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 + V DW + A +KA++L + + R GA+ + R E Sbjct: 474 TIRERVLADWTAEQRAAAARTKADELAAKLREGADPARLAATVPGATHARSEPFTRRP-E 532 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + ++F V G V + Sbjct: 533 AAALPASLVEELFGAQPGGVAVADGREGPVAARLVEIIPAVPDAAGVKVIRDTTEATLAD 592 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624 DL+ + L+ Q+ V+V+ LI Sbjct: 593 DLVTQYVGGLQRQFPVSVNRGLID 616 >gi|27363507|ref|NP_759035.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6] gi|27359623|gb|AAO08562.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6] Length = 619 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 133/628 (21%), Positives = 257/628 (40%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L S S S++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGS-SNSAAKVGNVEIGRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +D KF+ DV+ + L R G + + ++ + L R+ ++ Sbjct: 120 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + + R V + LN R + + +++++ K + PE ++SYI Sbjct: 179 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L G Sbjct: 239 AADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ LG ++ + D + ++ F+L GD T ++ FGY I Sbjct: 299 FATLAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K F +V I +M KA ++ E LE+ S++E S K Sbjct: 358 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V + DF + V E+ P Q + K D L+ + + + V++ + Sbjct: 415 VGQQVKHTDFISQ-VDAPEILRTPAVTQAITSPEVKLDGLN-SEAIEIAPEHIIVVRVDD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L EV V + VK ++ ++V K G I + G S Sbjct: 473 ARDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTAL-KAGNT--AILQEKGLSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 +I+R + + K + VV + + + Sbjct: 530 LEKIDRRSPLAQTVFAMAKPAAGNAVYGQSKDMEG----NVVVVALEKVEESLEPVLAQQ 585 Query: 591 IS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 IS L ++ + L S++A L++ + Sbjct: 586 ISVQLQRVSAQRDLSSIVAILRANTDIE 613 >gi|269961041|ref|ZP_06175410.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3] gi|269834260|gb|EEZ88350.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3] Length = 619 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 119/632 (18%), Positives = 262/632 (41%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + +++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVG-GNNNSAAKVGNTEIARGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F D++ + L R G + + ++ + L R ++ Sbjct: 120 MILDMPQFQS-NGQFDQDIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R V I ++ D ++ + +++ D + PE +++YI Sbjct: 179 EVQAEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPDMFTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 E +K++++S+++++ Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SAEELKKQVQVSDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + + LG ++ + D + ++ F+L GD T ++ FGY I Sbjct: 299 FATVAKEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K + + EV +I +M KA ++ E LE+ S+D+ S K Sbjct: 358 KLEELKGAVAKPYSEVAAEIKQEMIDQKAVDQFYELQNELEKVAFEFPDSLDDAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V + DF + EV Q + K+D L+ + + + V++++ Sbjct: 415 VGQKVKTTDFISQ-ADAPEVLKNQAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L+EV V + VK + ++V + K DI + Sbjct: 473 ARDETVLPLDEVKDQVVAELSRVKGEQGAIELGTKVVAALKEGNK---DILAENNLTFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG-PVQ 585 ++R S VF+ PV+ + L + VV ++ Sbjct: 530 QESVDRRS--------PLASTVFAMAKPVDGKPVYGQSKDLEGNIVVVELDAVHAELDSA 581 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +++ + + + ++ L SVIA L++ + Sbjct: 582 LEEQVATQMQRASSQLDLSSVIAVLRANTDIE 613 >gi|238754239|ref|ZP_04615596.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473] gi|238707486|gb|EEP99846.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473] Length = 627 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 127/633 (20%), Positives = 263/633 (41%), Gaps = 23/633 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + S Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGGYLIGGSN-DYAAKVNGQEISRAQLEQSM 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + L ++IL L++ LDQ+ + +GL A +V Sbjct: 60 QSERSRLQQQLGEQFSVLAGNEGYMQQLRQQILGQLINNMLLDQYAKQLGLSASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F DNKF ++ ++ + R G ++ + L ++ F Sbjct: 120 SIRQLPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQIQRQQLINQQLLQAFSETGFALPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++E+ ++++ APE +IS+I Sbjct: 179 EAQAMSELILQQREVRLATLDLKALQAKQTVTDEELKAYYEQNRNSFIAPEEMKISFIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++KI ++ +++ YE+++ + PE R + F N+ +A A LK G F Sbjct: 239 DAAAMQEKITVTEEDIATYYEQHRSSFTQPERRNYSVIQFKNEADAKTALAELKNGADFT 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+ + G P+ + + +L +KG + V+ S GY+I +++I Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP EV +A +++ KA + +++ E A + + ++ E+ Sbjct: 359 KPEQVKPLSEVHDALATKVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGSKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D ++ P + + + G++ + V DG ++I P Sbjct: 417 QTAWFTRDAVPAQLNYKPVIQAIFEGALVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 + ++V V + K K ++ +++ K+GK + K G S I Sbjct: 477 GVQPFDQVRDQVAELVKRQKAEQQARVDGEKILTAL-KQGKG-EEAMKAAGLSFGEKKMI 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQEKD 588 R +++ VF+ P V+ + + V+ ++ + G P E Sbjct: 535 ARAPGDDQL-----AQTVFALPHPQVEKPVYGLSQDRQDNIVLIELLSVTPGKLPEDEMP 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 F + + + +N LD++IA L Q ++ + Sbjct: 590 NFTTKMAEGINGIALDALIANLHKQATIKMGSA 622 >gi|320156965|ref|YP_004189344.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus MO6-24/O] gi|319932277|gb|ADV87141.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio vulnificus MO6-24/O] Length = 619 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 133/628 (21%), Positives = 257/628 (40%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L S S S++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGS-SNSAAKVGNVEIGRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +D KF+ DV+ + L R G + + ++ + L R+ ++ Sbjct: 120 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + + R V + LN R + + +++++ K + PE ++SYI Sbjct: 179 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L G Sbjct: 239 AADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ LG ++ + D + ++ F+L GD T ++ FGY I Sbjct: 299 FAALAQEKSDDFGSADNGGELGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K F +V I +M KA ++ E LE+ S++E S K Sbjct: 358 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V + DF + V E+ P Q + K D L+ + + + V++ + Sbjct: 415 VGQQVKHTDFISQ-VDAPEILRTPAVTQAITSPEVKLDGLN-SEAIEIAPEHIIVVRVDD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L EV V + VK ++ ++V K G I + G S Sbjct: 473 ARDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTAL-KAGNT--AILQEKGLSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 +I+R + + K + VV + + + Sbjct: 530 LEKIDRRSPLAQTVFAMAKPAAGNAVYGQSKDMEG----NVVVVALEKVEESLEPVLAQQ 585 Query: 591 IS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 IS L ++ + L S++A L++ + Sbjct: 586 ISVQLQRVSAQRDLSSIVAILRANTDIE 613 >gi|156973716|ref|YP_001444623.1| peptidyl-prolyl cis-trans isomerse [Vibrio harveyi ATCC BAA-1116] gi|156525310|gb|ABU70396.1| hypothetical protein VIBHAR_01421 [Vibrio harveyi ATCC BAA-1116] Length = 619 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 119/630 (18%), Positives = 257/630 (40%), Gaps = 30/630 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + ++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVG-GNNNAAAKVGNTEIARGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF +++ + L R G + + ++ + L R ++ Sbjct: 120 MILDMPQFQS-NGKFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R V I ++ D ++ + +++ + + PE +++YI Sbjct: 179 EVQSEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPEMFTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 E +K+I+IS+++++ Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SADELKKQIQISDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNGGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LAEE+ G + + LG ++ + D + ++ F+L GD T ++ FGY I Sbjct: 299 FAKLAEEKSNDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDITGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K + F EV +I +M KA ++ E LE+ S+D+ S K Sbjct: 358 KLEELKGAVAKPFSEVAAEIKQEMVDQKAVDQFYELQNELEKVAFEYPDSLDDAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V + DF + V EV Q + K+D L+ + + + V++++ Sbjct: 415 VGQKVKTTDFISQ-VDAPEVIKNQAVMQAILSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L +V V + VK + ++V K DI + Sbjct: 473 ARDETVLPLADVKDQVVAELSRVKGEQGAIELGTKVVAALKDGNK---DILAENNLAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVGPVQEKD 588 + ++R + P + L + VV ++ + Sbjct: 530 QDSVDRRS------PLAATVFAMAKPEGDKPVYGQSKDLDGNVVVIELDAVHAELDSTLE 583 Query: 589 KFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 + ++ + + ++ L SVIA L++ + Sbjct: 584 EQVAMQMQRASSQQDLTSVIAVLRANTDIE 613 >gi|238751010|ref|ZP_04612506.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380] gi|238710700|gb|EEQ02922.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380] Length = 628 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 125/637 (19%), Positives = 263/637 (41%), Gaps = 24/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ + +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERSRMQQQLGEQFSALAANEGYMQQMRQQVLGQLVNNMLLDQYAKKLGLTASDAQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F + KF + +++ + + G ++ + L ++ F Sbjct: 120 AIRQAPYFQTE-GKFDNSKYLALVNQMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++++ K+++ APE +IS+I Sbjct: 179 EAQAMSELILQQRDVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A Y+ +K Y PE R + F + +A A LKKG F Sbjct: 239 DAAAMQDKITVTEEDITAYYDLHKSSYTQPEQRNYSVIQFKTEADAKAALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G PD + + +L+ KG + V+ S GY+I +++I Sbjct: 299 TIAKEKSTDIISRKNGGELGWLEPDTTADELKQANLSDKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D +V P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPADVNFKPVIQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K + +++ K+GK + K G S + Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTL 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 +R + + + VF+ P V + + V+ ++ + G P E Sbjct: 535 SRAPGDEQL-----VQTVFALPHPQKDQPVYGLSQDRADNIVLIELLSVIPGKLPEGEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 FI+ + + + D+++A L Q ++ + L Q+ Sbjct: 590 TFIAKMEEGASNVTFDALMANLHKQATIKMG-TLEQQ 625 >gi|262404271|ref|ZP_06080826.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586] gi|262349303|gb|EEY98441.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586] Length = 619 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 118/627 (18%), Positives = 257/627 (40%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQSQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + ++ K L R ++ G Sbjct: 120 MILDMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +K+I I ++ Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + +LG ++ + D + + F+L + G + ++ FGY I Sbjct: 299 FATVAKEKSQDVGSAQEGGALGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +K + EV K + ++ +A + LE+ S+DE + K Sbjct: 358 RLDEVKAPVVKPYTEVAKAVKQELVDQQALDAFYTKQSELEKLAFEHSDSLDEAA---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 +S + DF + + ++ A P Q L K+D L+ + + + V+++E Sbjct: 415 ISTQVEHTDFISAE-QAPDLLANPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRMEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L +V + V + +K ++ N++V K G + ++ G + Sbjct: 473 SRPETVLPLADVKSQVVEQLSRMKGEQQALELGNKIVAAL-KVGNS--NVLAENGVAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q + + + + SKV P ++ Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DDAKGYAQAKDFDGNVVVIELNKVESKVTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+++ ++ L VI+ L+ + Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQNTDIE 613 >gi|319405521|emb|CBI79140.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. AR 15-3] Length = 629 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 162/635 (25%), Positives = 312/635 (49%), Gaps = 16/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE IR A +WVAKIFL L + F+ WG+ + +++ G+ + ++ + Sbjct: 1 MLETIRNAVNSWVAKIFLTTLLLCFIFLWGVPQ--LHIMNEKELLTSGKSTITIDNYRLA 58 Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ +G + + + + +L+ L D+ + + + Sbjct: 59 LADQSLRLAITSHLGRMFTPDEIQRYKIPVFVLNQLQQDVLFDEQARKMKINLSKDMLAR 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I+ +F + F+ D+F++ L R NE+ ++++YTK R ++ + GM+ N+ Sbjct: 119 IISNDNIFQR-NRAFNRDLFLNYLQRLHTNERNFLNYYTKKEKRKQLILASLSGMKAPNI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ E R DY+V++ + +ADP+ +L +WF +K +RAPEY+ +S + Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEEKVADPNQEILEKWFNTHKKKFRAPEYRTVSLLSI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 E K ++S +E+Q Y +N ++ PE RT+E+L F ++ AD A + + +G F Sbjct: 238 TSEEFLKPQDVSVNEIQTYYTQNASRFIIPEKRTIEELRFSTREAADNAAKKIAEGLSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L +E+ K LSDI+ G ++ +P+ LA IF L KKG + VI+ G VI V++I Sbjct: 298 ALVKEEKKKLSDITKGPLAENELPN-HLASEIFEL-KKGQISAVINDLQGPVIIRVAHIT 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS + Q+V+K+I + A+ V+ Y +E G S+ E++++ K+ + Sbjct: 356 PSTQIPLQKVEKEIRQILAKNYATTHVRNKYTEIENARFEGASLAELAKQYKLPLRKI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK +G + +P K+ LL ++ + + D ++LP+G Y+W Q+ IPARDR Sbjct: 415 IDKTGKTTEGISLTDLPQKDILLNAIYQSRENIDMD-PLSLPEGGYLWYQVDTIIPARDR 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L E +V W+ + + KA ++ + + GK+ + LG TT + R Sbjct: 474 TLSEAKQNVIIQWREEEIQRLLDEKAQDILKQLAN-GKSLDALATELGIIKQTTPALRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593 D+ ++ FG +G+ +F P + N + +++K+T S + + Sbjct: 533 DS-SQIFGVEGVKALFYDPQDHYGVVKGVNAENRIIYKITTSIIPEDITAHTLLPDIRTN 591 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + M+ +DL ++ +Y + ++++ R + Sbjct: 592 IDMMIREDLKLEMLQVANKEYPIEINNSNYTRIFN 626 >gi|238791435|ref|ZP_04635073.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC 29909] gi|238729051|gb|EEQ20567.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC 29909] Length = 628 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 127/635 (20%), Positives = 268/635 (42%), Gaps = 19/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F DNKF ++ ++ + R G ++ + L ++ F + Sbjct: 120 AIRQAPYFQ-TDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V ++ + + A ++ L ++++ K+++ APE ++S+I+ Sbjct: 179 EAQAMSELILQQREVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIVM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI ++ +++ A YE +K Y PE R + F + EA A LKKG F Sbjct: 239 DAAAMQDKITLTEEDIAAYYELHKSSYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +A+E+ + G PD + + +L +KG + V+ S GY+I +++I Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPDTTADELKQANLNEKGQLSDVVKSSVGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP+ EV +A Q++ KA + +++ E A + + ++ E+ Sbjct: 359 KPAQVKPLSEVHDALAKQVKQGKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAK 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D EV P + + + G++ + V DG ++I P Sbjct: 417 QTGWFTRDAVPAEVNFKPVVQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDAHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 + ++V V + K K + +L+ K+GK D K G + + Sbjct: 477 GIQPFDQVRDQVAELVKRQKAEQLARVDGEKLLTAL-KQGKG-EDAMKAAGITFGEKKAV 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKF 590 +R ++++ + P + + + + V+ ++ + G P E F Sbjct: 535 SRAPDDDQLVQTIF---ALAHPQKEQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKVF 591 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + + + D+++A L Q ++ + Q+ Sbjct: 592 TAKMLEGASGVTFDALMANLHKQATIKMGPAEQQQ 626 >gi|254286721|ref|ZP_04961675.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226] gi|150423148|gb|EDN15095.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226] Length = 619 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 122/628 (19%), Positives = 254/628 (40%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + K+ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAKVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589 I+R + + V E V + + VV ++ + ++ Sbjct: 530 LQMIDR----SSPLANTVYAMVKPQEGEKVYAQAKDFDGNIVVIELNKVESKLTPAYHEQ 585 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 586 IATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|251790644|ref|YP_003005365.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya zeae Ech1591] gi|247539265|gb|ACT07886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae Ech1591] Length = 626 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 123/639 (19%), Positives = 259/639 (40%), Gaps = 30/639 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ S Sbjct: 1 MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRSQLEQGV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ L ++L LV + Q+ ++GL +V Sbjct: 60 QNERSRQQEMLGDNFSALAANEGYMQQLRGQVLSQLVDETLVVQYAHNLGLNISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ ++S++ + G+ Y K L ++ Sbjct: 120 AIFSVPEFQ-TNNRFDNEKYLSQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 LD ++R+V ++ S+ + ++++ K Y APE ++SYI+ Sbjct: 179 ELDNLVAIAAQDRTVRTATIDLGARVKSQAVSDEEVKNFYDQNKARYLAPEQFKVSYIML 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K ++ +++ A YE++K ++ PE + + + +A + LKKG F Sbjct: 239 DAASIMDKTKVDGNDIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAVLEQLKKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+++ + + LG D L +KG + V+ S GY+I + Sbjct: 299 ALAKDKSTDIVSRRNGGDLGWMDDGSTVD---EIKQAGLKQKGQVSDVVKSSVGYLIIRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++ EV+ D++ +++ KA + ++L E A + ++ EK+ +I Sbjct: 356 DDVQAQHVKELDEVRADLSEKVKREKALDAFYSLQQKLSE--AASNDNESLASVEKVANI 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D + P + +L + G++ + V +G +V ++ E Sbjct: 414 KSVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEGDRAFVLRVTEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V V + K K ++ +A +++ + + GK D G S Sbjct: 474 KPETTQPLDQVREQVVQSLKRQKAEQQAKVEAEKILADLYQ-GKT--DSMAAAGLSFSAA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIE----NGLSYVVFKVTNSKVGPVQ 585 +++ M + VF+ P + + + + +V V P Sbjct: 531 KEMSSMGQTD-----ALAETVFAMAQPKKDKPSYAVAQDQSGNIVLIVLDAVKPHVLPDA 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +K +F + + Q L D+++ L+SQ + + + Sbjct: 586 QKKQFGAQIEQSNVGALFDTLMTSLRSQAKIKYGNAAQE 624 >gi|50120091|ref|YP_049258.1| peptidyl-prolyl cis-trans isomerase [Pectobacterium atrosepticum SCRI1043] gi|49610617|emb|CAG74062.1| peptidyl-prolyl cis-trans isomerase D [Pectobacterium atrosepticum SCRI1043] Length = 626 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 126/640 (19%), Positives = 265/640 (41%), Gaps = 30/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + S L ++ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDAQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ ++ ++ R G+ Y K L+ ++ F Sbjct: 120 AIFDVPAFQ-TNNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + ++R V ++ ++ + ++++ K N+ APE ++SYI Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D +++ + + YE+NK Y PE + + N+ EA SLK+G F Sbjct: 239 DAASIMDSVKVDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEAEAASVLDSLKQGGDFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG + + D L +KG + I S GY+I + Sbjct: 299 ALAKEKSTDIISRRNGGDLGWMDENSMID---ELKQAKLTEKGQVSAAIKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P EV+ +IA +++ KA + +++ E A + ++ E+ S+ Sbjct: 356 DDVQPQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKISE--AASNDNESLASAEEAASV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 ++ ++ + P + + + G++ + V DG +V +I E Sbjct: 414 KAAQTEWFTREKVPAVLNFQPVTQAIFSGALLGENGAAGNNSDVINVDGDRAFVLRITEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P R L++V T++ + K K ++ A +++ E K+GK+ D K G S Sbjct: 474 KPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD--DALKAAGLSFGEA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPV--Q 585 ++ + G +F+ P + + V+ + + + + Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPQKDKPSYAITQDQAGNIVLAALDSVTPHQLNDE 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K +F S + Q L DS+++ L+S+ + + + ++ Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625 >gi|229515304|ref|ZP_04404764.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21] gi|229348009|gb|EEO12968.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21] Length = 619 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 121/627 (19%), Positives = 253/627 (40%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + ++ Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDEAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|294635328|ref|ZP_06713825.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC 23685] gi|291091304|gb|EFE23865.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC 23685] Length = 626 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 116/640 (18%), Positives = 256/640 (40%), Gaps = 29/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + L +++L ++ LDQ+ + + L +V Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRQQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F DN F + ++ +AR G+ Y + L ++ F Sbjct: 120 AIRTLPYFQ-TDNHFDNAKYLEMVARLGLTPDSYAQLMRQQLVTQQLIQGFTATGFTLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R ++ ++ + + S+A L +++++++++ APE R+SYI Sbjct: 179 EVSSLAALTMQQRLINLATIDIKQLMPQQKVSDAELQGYYQQHQNSFIAPEAVRVSYIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K+ +S+ E+ A Y+++K + PE + ++ EA + L KG F Sbjct: 239 DAAAINDKMTVSDAEISAYYDQHKRSFTQPERNKYSVIQVKSEAEAKAIAEQLAKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E + + LG E P L L KG + I S GY+I + Sbjct: 299 TLAKEHSSDIISRKNGGELGWMEPESTPQEILN---AKLTTKGQVSAPIASSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P+ EV+ IA++++ K+ + +++ + A + D ++ E+ Sbjct: 356 DDMQPAVIKPLSEVRAAIADKVKQQKSLDAFYAMQQKVSD--AATSDNDSLAGAEEAAGA 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D + P + + +FG++ + V +G +V ++ Sbjct: 414 KATETAWFTRDSVPAALNFKPVVQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSAH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + ++V V + K K + S+ +L+ + GK + G S Sbjct: 474 KPEAVKPFDQVRDQVTELLKRQKAIAQARSEGEKLLAAL-QAGKG-DAALQAAGLSFGAE 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQ 585 + R ++ + + VF+ P V + + V+ ++ K G + Sbjct: 532 QTLTRASDDRQL-----VDTVFALPHPQANKPVYGLSEDRQDNIVLIRLNAVKAGQLTAE 586 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 E+ F S + ++++ L++ + + + Sbjct: 587 EQKAFASQMLTGETGITFEALMDNLRANGKIKLGAAAEMQ 626 >gi|229521840|ref|ZP_04411257.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM 11079-80] gi|229340765|gb|EEO05770.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM 11079-80] Length = 619 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 121/627 (19%), Positives = 252/627 (40%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKTPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|261210559|ref|ZP_05924852.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341] gi|260840344|gb|EEX66915.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341] Length = 619 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 122/627 (19%), Positives = 256/627 (40%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + K+ L ++ + F+ G+ + L S G++T VG+ ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKVILGLIILSFIFAGVGNYLIS-GGNNTAAKVGKAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + ++ K L R ++ G Sbjct: 120 MILEMPQFQSQ-GQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +K+I I ++ Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + SLG ++ + D + + F+L + G + ++ FGY I Sbjct: 299 FATVAKEKSQDVGSAQEGGSLGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +K + EV + I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDEVKAPVVKPYSEVVEAIKQELIDQQALDTFYAKQSELEKLAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + E+ A P Q+L K+D L+ + + + V+++E Sbjct: 418 TVEHTDFISAE----QAPELLATPAVLQVLKTPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P LEEV V + +K ++ NQLV K G+ D+ G + Sbjct: 473 SRPETVLPLEEVKPQVVEQLSRMKGEQQALELGNQLVASL-KSGET--DVLAENGVAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SKV P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+++ ++ L VI+ L+ + Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQNTEIE 613 >gi|49474119|ref|YP_032161.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana str. Toulouse] gi|49239623|emb|CAF25982.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana str. Toulouse] Length = 629 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 149/628 (23%), Positives = 296/628 (47%), Gaps = 16/628 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML IIR A+ +WVA+IFLV L + F+ WG+ ++S G + + + Sbjct: 1 MLNIIRNATNSWVARIFLVSLLLCFIFLWGIPQ--LHTKSERDLISSGESTITVDDYHLA 58 Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ +G + + + + L D+ + + + Sbjct: 59 LADQSSRLALASHLGRMFTPNEMQQYQIPTFVFSQLQQDVLFDEETRQMKINLSKDAIAR 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + +F + F+ ++F + L + I+E ++D+YTK R ++ + GM+ + Sbjct: 119 SLGADNMFQ-INGVFNQNLFRNYLQQLHISESNFLDYYTKKEKRKQLIAASLSGMKAPDF 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R DY+VL+ + I+DP L +WFE +K+ +R PEY+ +S + Sbjct: 178 FYKALALYQGETRIADYLVLDLKEKKTISDPDQETLQKWFETHKNEFRVPEYRTVSLLSM 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + K +IS DE +A Y +N ++ +PE RT+E+L FP ++ AD A + + G F Sbjct: 238 KLAKFIKPEDISEDEARAYYTQNTSRFIAPEKRTIEELRFPTREAADNAAKKIADGLSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L + + K+L+DI G ++ +P+ LA IF L K+G + VI+ G VI V++I Sbjct: 298 DLVKAEKKTLNDIKKGPLAESELPNR-LASEIFEL-KQGQVSAVINDLQGPVIIRVTSIV 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS + F+ V+++I + +A++ ++ +Y +E G S+ E++ + K+ + Sbjct: 356 PSSPIPFENVEENIRQMLAKNRAADDMRNNYTAIENARFEGASLKELADQYKLPLRTI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK +G + +P K+ LL ++ ++ D ++L G Y+W ++ IPARD+ Sbjct: 415 IDKTGKTSEGTILIDLPEKDILLNSIYQSNEGADLD-PLSLQGGGYLWYKVDTIIPARDK 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 EE + WK+ + + KA L+ G++ + LG + TT + R Sbjct: 474 TFEEAKQNAIVQWKSEEIQRLLDEKAKD-ALKQLTAGQSLVSLAHILGVTKQTTQPLRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593 D+ ++ FG +GI +FS + +++++ + + Sbjct: 533 DS-SEIFGLEGIKALFSDSKGHYGIVKGPVATNRILYQIKEVTMPKDFTAQTLSPDIRTN 591 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + +M+ +DL ++ ++ + ++ Sbjct: 592 IDRMIREDLKLEMLQVANKKHPLKINSA 619 >gi|261822503|ref|YP_003260609.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium wasabiae WPP163] gi|261606516|gb|ACX89002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium wasabiae WPP163] Length = 627 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 126/639 (19%), Positives = 259/639 (40%), Gaps = 30/639 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRGQLEQAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G + S L K+ L L+ LDQ+ +GL ++ Sbjct: 60 QNERSRQQEALGENFSILASNDGYMQQLRKQALSQLIDETLLDQYANKLGLNISDEQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F ++ ++ ++ R G+ Y K L+ ++ F Sbjct: 120 AIFDVPAFQ-TNKHFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + ++R V ++ ++ + ++++ K + APE ++SYI Sbjct: 179 EIDNLVKLAAQDRVVRVATIDVAAKAKALTVADDEVQSYYDQNKGRFIAPEEFKVSYITL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++I + + YE+NK Y PE + + N+ +A +LK+G F Sbjct: 239 DAASIMDNVKIDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG + D LA+KG + I S GY+I + Sbjct: 299 TLAKEKSTDIISRRNGGDLGWMDENSTID---ELKQAKLAEKGQVSSAIKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++P +V+ +IA +++ KA + +++ E A + ++ E+ I Sbjct: 356 DDVQPQQVKPLSDVRAEIAEKVKHEKAQDGFYALQQKVSE--AASNDNESLASAEEAAGI 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ ++ + P + + + G++ + V DG +V +I E Sbjct: 414 KATQTDWFTREQVPAALNFKPVTQSIFNGALLGENGAAGNNSDVINVDGDRAFVLRITEY 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P R L++V T++ + K K ++ A +++ E K+GK+ D K G S Sbjct: 474 RPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAEL-KQGKD--DALKAAGLSFGQA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPV--Q 585 ++ + G +F+ P + + V+ + + + + Sbjct: 531 KTLSSISQ-----GDATAEAIFAMPHPEKDKPSYTITQDQAGNIVLAALDSVTPHQLNDE 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +K +F S + Q L DS+++ L+S+ + + + Q Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAAQ 624 >gi|153831363|ref|ZP_01984030.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39] gi|229529056|ref|ZP_04418446.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)] gi|148873155|gb|EDL71290.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39] gi|229332830|gb|EEN98316.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)] Length = 619 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 121/627 (19%), Positives = 251/627 (40%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|304395503|ref|ZP_07377386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB] gi|304356797|gb|EFM21161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB] Length = 622 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 111/626 (17%), Positives = 249/626 (39%), Gaps = 21/626 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V KI L ++ V F++ G+ + L + V Q++ ++ Sbjct: 1 MMDNLRAASNNVVLKIILGLIMVSFVLTGVGNYLIG-GNNDYAAKVNGQEISRGQLEQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + S + ++ L L+ A LD +I+D+ L +V Sbjct: 60 NSERSRQQQMLGDQFSQLASNDGYMQQIRQQALSQLIDQALLDSYIKDLHLSISDDQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF + +++ + G + +Y + K LS ++ Sbjct: 120 AIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + L+ + A ++ ++Q+++++K ++ APE R+SYIL Sbjct: 179 EASKLVDLVSQQRDIRQATLDVNALAAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + + S ++QA Y+++K Y P+ + + +A+ LK G F Sbjct: 239 DAASM--QQDASEADIQAWYDQHKADYTQPQRTRYSVIQTKTEADANAVLAQLKGGASFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+ + +G PD L +KG + VI S G+++ + Sbjct: 297 DVAKAKSIDPISARKGGDMGWLEPSTTPD---ELKNAGLTQKGQMSGVIKSSVGFLVVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P +V+ IA +++ K + + +++ E A + ++ E+ + Sbjct: 354 DDIQPEQVKPLNDVRSAIAAKVKQEKGVDAFYKLQQKVSE--AASNDNESLAGAEQASGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D + K+ + + G++ + + DG +V +I E Sbjct: 412 KAKETGWFSQDTLPDALNFDAVKQAIFNGGLVGQNGAPGNNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + K K ++ ++A++L+ + K GK +D G +L + Sbjct: 472 KPEAVKPLDQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK--QDALTAAGLTLSAS 528 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 ++R + + Q ++ + V + P + D+ + Sbjct: 529 KTVDRNAQDPVAQAAFNLPQPAENKPSWGVSEDMQGNVVLVAVDKVKTGSMPQAQIDEMV 588 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617 +TQ + ++++ L+ + + Sbjct: 589 KGVTQNNAQLTFEALLQNLRKEAKIK 614 >gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591616|ref|ZP_01678864.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80] gi|121727851|ref|ZP_01680918.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52] gi|147674490|ref|YP_001217451.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395] gi|153820108|ref|ZP_01972775.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457] gi|153823840|ref|ZP_01976507.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33] gi|227082048|ref|YP_002810599.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2] gi|229507986|ref|ZP_04397491.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX 330286] gi|229511777|ref|ZP_04401256.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33] gi|229518914|ref|ZP_04408357.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9] gi|229607532|ref|YP_002878180.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236] gi|254849006|ref|ZP_05238356.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10] gi|255745323|ref|ZP_05419272.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101] gi|262156047|ref|ZP_06029167.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE 91/1] gi|262167880|ref|ZP_06035580.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27] gi|298498044|ref|ZP_07007851.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757] gi|9656453|gb|AAF95066.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546529|gb|EAX56737.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80] gi|121629887|gb|EAX62301.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52] gi|126509350|gb|EAZ71944.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457] gi|126518637|gb|EAZ75860.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33] gi|146316373|gb|ABQ20912.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395] gi|227009936|gb|ACP06148.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2] gi|227013816|gb|ACP10026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O395] gi|229343603|gb|EEO08578.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9] gi|229351742|gb|EEO16683.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33] gi|229355491|gb|EEO20412.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX 330286] gi|229370187|gb|ACQ60610.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236] gi|254844711|gb|EET23125.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10] gi|255737153|gb|EET92549.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101] gi|262023607|gb|EEY42308.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27] gi|262030225|gb|EEY48869.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE 91/1] gi|297542377|gb|EFH78427.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757] Length = 619 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 121/627 (19%), Positives = 250/627 (39%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|297579436|ref|ZP_06941364.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385] gi|297537030|gb|EFH75863.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385] Length = 619 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 121/627 (19%), Positives = 250/627 (39%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAEEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDEIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|308185912|ref|YP_003930043.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1] gi|308056422|gb|ADO08594.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1] Length = 622 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 115/632 (18%), Positives = 254/632 (40%), Gaps = 33/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V KI L ++ V F++ G+ + L + V Q++ ++ Sbjct: 1 MMDNLRAASNHVVLKIILGLIIVSFVLTGVGNYLIG-GNNDYAAKVNGQEISRGQLEQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + S + ++ L L+ A LD +I+++ L +V Sbjct: 60 NSERSRQQQMLGDQFSQLASNDGFMQQMRQQALSQLIDQALLDSYIKELHLSISDDQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF + +++ + G + +Y + K LS ++ Sbjct: 120 AIFNQQAFQ-TNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + L+ + A ++ ++Q+++++K ++ APE R+SYIL Sbjct: 179 EASKLVDLVSQQRDIRQATLDVNALMAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + + S ++QA Y+++K Y P+ + + +A+ LK G F Sbjct: 239 DAASM--QQDASEADIQAWYDQHKADYSQPQRNRYSVIQTKTEADANAVLAQLKGGANFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+ + +G PD L +KG + VI S G+++ + Sbjct: 297 DVAKAKSIDPISARKGGDMGWLEPSTTPD---ELKNAGLTEKGQMSGVIKSSVGFLVVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P EV+ +A +++ K + + +++ E A + ++ E+ + Sbjct: 354 DDIQPEQVKPLDEVRSAVAAKVKQEKGVDAFYKLQQKVSE--AASNDNESLAGAEQASGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D + K+ + + G++ + + DG +V +I E Sbjct: 412 KAKETGWFSQDTLPDALNFDAVKQAIFNGGLVGQNGAPGNNSDIITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + LE+V + K K ++ ++A++L+ + K GK D G +L + Sbjct: 472 KPEAVKPLEQVKAQITDTLKHDKATQQAKAQADKLLTDL-KAGK--LDALTAAGLTLSVS 528 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585 ++R + F+ P + + + + + V+ V K G P Sbjct: 529 KTVDRNAQD------PVAQAAFNLPQPADNKPSWGVSEDMQGNVVLVAVDKVKTGSMPQA 582 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + D+ + +TQ + ++++ L+ + + Sbjct: 583 QIDEMVKGVTQNNAQLTFEALLQNLRKEAKIK 614 >gi|312882503|ref|ZP_07742244.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369903|gb|EFP97414.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC BAA-2122] Length = 619 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 125/630 (19%), Positives = 258/630 (40%), Gaps = 30/630 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + K+ L V+ + F+ G+S + S + SS VG ++ F + Sbjct: 1 MMERMREGASGVAVKVILGVIILSFVFTGVSGYIGSGASSS-AAKVGNDEISRGDFEREY 59 Query: 61 KQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + ++G ++ A K +LD ++ +++ E +GL +V Sbjct: 60 QNQRNQMQAQLGDYFSNLLADQNYVNTFRKSVLDRMIDDKLIERHAESLGLRVSDAQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I P F + KF DV+ + L R G + + K + R + G Sbjct: 120 QIFEFPQFQ-VEGKFDEDVYQATLRRAGFTAHTFSEDLRKNILREQLRNAIEGTDFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V I L+ S+ + +++++ Y PE +++YI Sbjct: 179 EVESQSKLISQTRDVKKITLSLSDFAKKVKLSDEEINDYYQQHTSQYTRPEQMKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I +S+++ +A Y+ N +KY S E R V ++ N+++A + L G Sbjct: 239 SAEKLKNNIVVSDNDAKAYYQDNIDKYTSEEQRRVSHILIQGDNKEKAQKVLDKLNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E + + SLG ++ + D + F+L + G+ T ++ FGY I Sbjct: 299 FATLAKEDSEDVGSAEEGGSLGWIERD-VMDPEFEKAAFALKQPGETTGLVKSEFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKI 410 + +K T S++ V+K I +++ KA+++ +LE + S+D + K Sbjct: 358 KLDELKAPETESYETVEKAIKQELKDQKAADEFYALQAQLETQAYESPDSLDAAAEAIKA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + D ++ Q L K+D L+ + + + V+I + Sbjct: 418 NIQTTDFIS----DANAPDLLKSAPVLQALANPEVKEDGLN-SEVIEIAPEHVLVVRIND 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + P + L EV DV + VK E A +V E K GK D+ K G Sbjct: 473 TRPEKLLPLSEVRDDVVEAATEVKAKESAEKLAISIVEEL-KSGK--EDLLKKYGLQFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQE-K 587 ++R + + P + + + +++ +T P ++ + Sbjct: 530 AESLDRSS------PIANVVFAMTKPTDGKIEYTQLRDLNGDFLIVGLTQVVSKPNKQYE 583 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + LT+ + +I L+++ + Sbjct: 584 EQIKAQLTRTNAQQDFTGLIKILRNETDIQ 613 >gi|229523938|ref|ZP_04413343.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv. albensis VL426] gi|229337519|gb|EEO02536.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv. albensis VL426] Length = 619 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 121/627 (19%), Positives = 250/627 (39%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKAPVVKPCSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 530 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613 >gi|260366277|ref|ZP_05778733.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus K5030] gi|308114046|gb|EFO51586.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus K5030] Length = 555 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 103/548 (18%), Positives = 233/548 (42%), Gaps = 21/548 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ L + S ++ VG ++P F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +++ LDQ E +GL +V Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + +F +++ + L R G + + ++ + L R ++ Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R + + ++ + ++ + +++ DN+ PE ++SY+ Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 +K+I++++++++ Y+++ +KY S E R V ++ ++ +A L G Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + + LG ++ + D + ++ F+L GD + ++ FGY I Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALKNPGDMSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K + F EV +I ++ KA ++ E LE S+D+ S K Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ ++ DF + V EV Q L K+D L+ + + + V++++ Sbjct: 415 INQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN-SEAIEVAPEHIIVVRVED 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S L EV V + VK + ++V ++ + + Sbjct: 473 SRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGE 529 Query: 531 TNQINRMD 538 ++R Sbjct: 530 QETVDRRS 537 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 108/304 (35%), Gaps = 14/304 (4%) Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 I L F+K+ + + A +FT YV +K V+ ++VKK Sbjct: 198 IDLAEFAKK-VELTDEEIQAYYKANPDNFTRPEQVKVSYVELSAEALKKQIQVTDEDVKK 256 Query: 370 DIANQMRI--TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 + ++ +V ++ +DE++ ++ D G G Sbjct: 257 YYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADFAAVAQEKSDDFGSAENG 316 Query: 428 KEVAAIP---YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 ++ I F +P V D Y ++++E A + +EV Sbjct: 317 GDLGWIERDVMDPAFEEAAFALKNPGDMSGLVK-SDFGYHIIKLEELKDAVAKPFDEVAA 375 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 ++K++ K ++ N+L + + D K + + TT+ I+++D Sbjct: 376 EIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDASKAINQEVKTTDFISQVDAPEVLR 435 Query: 545 GYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQM 597 + + S V + +V +V +S+ + + KD+ ++ L+++ Sbjct: 436 NQAVMQALLSPEVKEDGLNSEAIEVAPEHIIVVRVEDSRDETVLPLAEVKDQVVAELSRV 495 Query: 598 MNKD 601 + Sbjct: 496 KGEQ 499 >gi|271499601|ref|YP_003332626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech586] gi|270343156|gb|ACZ75921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech586] Length = 626 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 121/639 (18%), Positives = 258/639 (40%), Gaps = 30/639 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ F++ G+ D L SG V Q++ S Sbjct: 1 MMDNLRAAANNVVLKVILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRSQLEQGV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ L K++L L+ + Q+ +GL ++ Sbjct: 60 QNERNRQQEMLGDNFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F +D +++++ + G+ Y K L ++ Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQMGLTPDAYAQFLRKQLLTQQLIRGLGSTDFVLQQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 LD ++R++ L+ S+ + ++++ K Y APE ++SYI+ Sbjct: 179 ELDNLVAMAAQDRTIRTATLDLGVRARSQTVSDDEVKNFYDQNKSRYLAPEQFKVSYIML 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K ++ N+++ A YE++K ++ PE + + + +A LKKG F Sbjct: 239 DAASIMDKTKVDNNDIAAYYEQHKGEFTQPERKKYSVIQLKTEADAKVVLDQLKKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG D L +KG + VI S GY+I + Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDDGSTVD---EIKQAGLKQKGQLSDVIKSSVGYLIIRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+ + EV+ D+A +++ K+ + +++ E A + + EK+ ++ Sbjct: 356 DDIQAQRVKALDEVRADLAEKVKREKSLDAFYALQQKVSE--AASNDNESLVSAEKVANV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D + P + +L + G++ + V +G +V ++ + Sbjct: 414 KAVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEGDRAFVLRVTDH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V V + K K ++ A +++ + ++ GK D G S Sbjct: 474 KPEATQPLDKVRDQVVQSLKRQKAEQQARVDAEKILADLNQ-GKT--DSMTAAGLSFSAA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPV--Q 585 I+ + + VF+ P + + V+ + K + Sbjct: 531 KVISSIGQTDALS-----ETVFAMPQPKKDKPSYAVAQDQAGNIVLVALDAVKPHALSDD 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +K +F + + Q L D+++ L+SQ + + + + Sbjct: 586 QKKQFGNQIEQSSVGALFDTLLTSLRSQAKIKLGNAAQE 624 >gi|71907562|ref|YP_285149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] gi|71847183|gb|AAZ46679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] Length = 628 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 111/645 (17%), Positives = 265/645 (41%), Gaps = 42/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R R + ++FL ++ +PF +G+ + S V S+G K+ F + Sbjct: 1 MFDAVRNNKR--IVQVFLALITLPFAFFGVDSYMRSAGSGGDVASIGDIKITQQQFQQTL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + ++G +++ + + ILD+L++ L + + + I Sbjct: 59 REQQERLRTQLGAQFDAKMLDNPEARRAILDDLINQRLLLVEASKKHMSVSNDAIRQTIG 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D KFS + + + L +G++ + + L+ + + + D Sbjct: 119 AIEAFK-VDGKFSTERYEAALRAQGMSPTGFEAQLRQDLTLQQLASAVGQSGLVARSVSD 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R V + ++ + +++++ ++ PE + Y++ + Sbjct: 178 RLLSLQTEKREVMEYRFSLESYLDKVKLADDAVRKFYDENGQQFQMPEQAKAEYVVLSMD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------EADEAFQSLKK 292 ++ +S+ E++A Y+ +K+++ + E R ++ ++K +A+E ++K Sbjct: 238 SIGSQLSVSDAEIKAWYDGHKDRFQAAEERRASHILLASEKLGKDKAKAKAEELLAEIRK 297 Query: 293 G-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F LA+ + G + LG F + + S D+ F L K G+ + V+ FG Sbjct: 298 NPAAFADLAKKNSDDPGSASKGGDLGFFGRGMMVK-SFEDTAFGL-KDGEISGVVESDFG 355 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 + I V+ I + +VK +I +++ T +S K E + + S+ ++ Sbjct: 356 FHIIKVTGIHAAKEKPLADVKGEIEAELKKTGSSRKFAEAAEAFSNMVYEQSDSLKPVAE 415 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYM 464 + K+ + D+ G+ + + E+++ +F D +K +T V + + + Sbjct: 416 KFKL---TIKQSDWLGR--QANPANGVLGNEKIMAALFSDDSVKNKRNTEAVEIAPNTLV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++ + P + + V ++ K K A+ ++SK + LE K+G++ Sbjct: 471 AARLIDYKPTALQPFDGVKAGIETMLKR-KEAQVLASKDGEARLEALKKGED-------- 521 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG 582 + ++R+D+ VF + + G Y ++K++ G Sbjct: 522 KLNWGAAKSVSRLDSR--LIPPPAAQSVFRMETGKLPAYTGVELPGTGYALYKLSKVVAG 579 Query: 583 P---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 K + L ++ K+ + +A L+S+Y V V+ ++ Sbjct: 580 ENLDEASKKGMLQQLGNLVAKEEVQLYLAALRSRYKVEVNQAALE 624 >gi|145298875|ref|YP_001141716.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851647|gb|ABO89968.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp. salmonicida A449] Length = 637 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 123/637 (19%), Positives = 253/637 (39%), Gaps = 31/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ VAK+ L ++ + F + G+ L + ++ +V + ++ N++ Sbjct: 2 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGNDISSAALENAY 60 Query: 61 KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + A + +LD L+ A D ++GL ++ Sbjct: 61 RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 120 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +D KF++D ++ + R G+ + + D + + R ++G +G Sbjct: 121 AIIAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +Q + Y + R + + L S+ + Q+++ + E ++ Y+L Sbjct: 180 EAEQLDKLYNQTRDLRLVRLAAAAYLGDVQVSDQEVEQYYKTNSARFMNDEKVKVDYLLL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 D K I+++ + + Y+++++ + E R V ++ P +K A E Sbjct: 240 DAANLGKDIKVTEQDAKDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEKLAGELLTKA 299 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G F LA+ L F K + D + + F+L K GD + ++ F Sbjct: 300 KGGDDFAALAKANSSDTFSAKKGGELDWFEKG-VMDPAFEQAAFALNKAGDLSNLVKSPF 358 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ + + ++ + T F +V + +++ KA E + +++ + + + D + Sbjct: 359 GFHVIKLLGVEAAQTKPFVDVMGETIRRLQADKAKELFFAEQQKMAD--SSFENQDSLDL 416 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + + VDF + E P + F +DD + D + L DG + + Sbjct: 417 TADTMGLKVQSVDFFSQ-ADAPEPLNDPKVLSVAFSEQLRDDNTNSD-VIELADGKALVL 474 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 I P + L E+ V K K +E KA L L+ K G+N + LG Sbjct: 475 HITGYQPKAAKPLAEIKEQVIAAIKYDKASEVARGKAQGL-LDKLKAGENIQADLTALGL 533 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVFKVTNSKV 581 + T + R + + ++QVF P V+ NG VV Sbjct: 534 KMETHKGVARF---AQDMDQNLVAQVFRMPHPKDGKPSVELVAEANGDRVVVALDKVVVA 590 Query: 582 GPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 + + L Q + S+I L+ + Sbjct: 591 KEPSQMVSLLQGQLGQGKAQVSYKSLIDELRKAAKIE 627 >gi|260768943|ref|ZP_05877877.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP 102972] gi|260616973|gb|EEX42158.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP 102972] Length = 619 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 126/627 (20%), Positives = 258/627 (41%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S S + VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGSN-NAAAKVGGTEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +++ LDQ + +GL ++ Sbjct: 60 QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ S L R G + + ++ + L R ++ G Sbjct: 120 MILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R + I L+ + S+ + Q++++ + Y PE ++SYI Sbjct: 179 EVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I IS+++ + YE + +KY S E R V ++ ++K A L G Sbjct: 239 SAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + + SLG + + D + + F+L K GD + ++ FGY I Sbjct: 299 FATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + ++K + EV DI ++++ +A +K E LE+ S+D+ ++ Sbjct: 358 KLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAFESPDSLDDAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + V + + + + + K+D L+ + + + V+++E Sbjct: 418 HIVSTDFVS----EQQLPKALNNADVLKAIQSPEVKEDGLN-SEAIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L EV V +K ++ + ANQLV K + + + Sbjct: 473 SRPEMVLPLNEVKDQVVAQLSKLKGEQQALALANQLVDGLKKGDLSLLE---QHQLAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 N I+R +++ G V + + + V +KV P Q ++ Sbjct: 530 LNMIDRSSPLAGTV--YAMAKPADGAVTYAQAKDFDGNIVVVELDKVEAKVNP-QYNEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L +M + L V++ L+ + Sbjct: 587 GAQLARMGVQQDLAGVLSVLRQNADIK 613 >gi|307129932|ref|YP_003881948.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937] gi|306527461|gb|ADM97391.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937] Length = 626 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 123/639 (19%), Positives = 258/639 (40%), Gaps = 30/639 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + Sbjct: 1 MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRAQLEQGV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ L K++L L+ + Q+ +GL +V Sbjct: 60 QNERSRQQEMLGENFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F +D +++++ + G+ Y K L ++ Sbjct: 120 AIFSVPEFQ-TNNRFDNDKYLAQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 LD ++R++ ++ S+ + ++++ K+ Y APE ++SYI+ Sbjct: 179 ELDNLVAMASQDRTIRTATIDLSARARNQTVSDEEVKNFYDQNKNRYLAPEQFKVSYIML 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K ++ N ++ A YE++K ++ PE + + + +A A + LKKG F Sbjct: 239 DAASIMDKTKVDNADIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAALEQLKKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG D L +KG + VI S GY+I + Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDDGSTVD---EIKQAGLKQKGQLSDVIKSSVGYLIIRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+ + EV+ D+A +++ K+ + +++ E A + ++ EK+ +I Sbjct: 356 DDIQAQHVKALDEVRADLAEKVKREKSLDAFYSLQQKISE--AASNDNESLASAEKVANI 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D + P + + + G++ + V +G +V ++ E Sbjct: 414 KAVQTDWFTRDNVPAALNFQPVTQAIFGGSLVGENGTPGNNSDVISVEGDRAFVLRVTEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V V + K K ++ +A +++ + + GK D S Sbjct: 474 KPETTQPLDQVREQVVQTLKRQKAEQQAKVEAEKILADLYQ-GKT--DSMTAASLSFGAA 530 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPV----Q 585 +++ + VF+ P + + + + V + V P Sbjct: 531 KEMSSTGQTDVL-----AETVFAMQQPKKDKPSYAVAQDQAGNVVLIALDAVKPHVLSDD 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +K +F + L Q L D+++ L+SQ + + Sbjct: 586 QKKQFGAQLEQSSVGALFDTLLTSLRSQAKIKYGSAAQE 624 >gi|315180639|gb|ADT87553.1| peptidyl-prolyl cis-trans isomerase D [Vibrio furnissii NCTC 11218] Length = 619 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 125/627 (19%), Positives = 259/627 (41%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S S + VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGSN-NAAAKVGGTEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +++ LDQ + +GL ++ Sbjct: 60 QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ S L R G + + ++ + L R ++ G Sbjct: 120 MILDMPQFQ-TDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R + I L+ + S+ + Q++++ + Y PE ++SYI Sbjct: 179 EVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I IS+++ + YE + +KY S E R V ++ ++K A L G Sbjct: 239 SAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + + SLG + + D + + F+L K GD + ++ FGY I Sbjct: 299 FATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + ++K + EV DI ++++ +A +K E LE+ S+D+ ++ Sbjct: 358 KLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAFESPDSLDDAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + V + + + + + K+D L+ + + + V+++E Sbjct: 418 HIVSTDFVS----EQQLPKALNNADVLKAIQSPEVKEDGLN-SEAIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L EV V +K ++ + A+QLV +K + + + Sbjct: 473 SRPEMVLPLNEVKDQVVAQLSKLKGEQQALALASQLVDGLNKGDLSLLE---QHQLAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 N I+R +++ G V + + + V +KV P Q ++ Sbjct: 530 LNMIDRSSPLAGTV--YAMAKPADGAVTYAQAKDFDGNIVVVELDKVEAKVNP-QYNEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L +M + L V++ L+ + Sbjct: 587 GAQLARMGVQQDLAGVLSVLRQNADIK 613 >gi|24373364|ref|NP_717407.1| peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1] gi|24347627|gb|AAN54851.1|AE015624_4 peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1] Length = 621 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 124/637 (19%), Positives = 252/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTS-EVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF ++ + + L + G + + ++R + VG Sbjct: 120 AIKSEPAFQ-TDGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLAKASVTDEQVKSYYDANQGQFMSPEKVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 + + K +++++E Q Y+++K +Y S E R ++ + +A++ + L Sbjct: 239 NAADFAKDSKVTDEEAQTYYDEHKAQYVSNEKRLAAHILIALGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+ + L F + D + ++F+L +KG + V+ F Sbjct: 299 DNGADFAALAKANSEDTLSAEQGGKLDWFEPG-VMDPTFDTALFAL-QKGQHSGVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +I+P TV F +VK I Q++ KA ++ +L + D ++ Sbjct: 357 GFHIIKLLDIQPGTTVPFADVKTKIFAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K+V +++ +D +V A K ++ F + L + Sbjct: 415 TAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDPVMRQGLNSEVIELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++KE A L EV D+ + K + E +KA +L+ + Sbjct: 471 VIRMKEHHDAGTMPLAEVKADIAERLKQEQANEAARAKAEELMAQVK---------AGAA 521 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579 SL ++ R + + + F P +V + NG + V KV + Sbjct: 522 DVSLTAKTKLGRG---AQDVDAAIVGKAFQMPTPSAAPVVGTVGLANGYAVVALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + L ++ +I LK+ V Sbjct: 579 DSVSDELVNALKQRLNAQYSEADYRGLIESLKANAKV 615 >gi|148977892|ref|ZP_01814445.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3] gi|145962838|gb|EDK28110.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3] Length = 621 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 119/632 (18%), Positives = 247/632 (39%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ + L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQAALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + Q++ + Y PE ++SYI Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKDVELTDEQIEQYYTENPLAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTAEQRKVSHILVEGDDEAKAQSILDELNAGTD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ LG ++ + D + D+ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEDAAFALQNVGDTTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K + + EV +I ++ A ++ E LE+ S+D+ + Sbjct: 358 KLDELKAPESQPYAEVAAEIKQELLDQHAVDQFYEMQTELEKVAFEFPDSLDDSAEAINA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + A EV P Q + K+D L+ + + + V+++E Sbjct: 418 KITTTDFISQA----DAPEVLMTPAVMQAILSPEVKEDGLN-SELIEVAPEHVIVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEEV V VK E+ LV + K G + + Sbjct: 473 TRDETVLPLEEVKDQVVAALSAVKAEEQAVELGVSLVNDL-KAGN--EAVLADNNLEFTE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQ 585 I+R + VF+ + + VV +++ Sbjct: 530 LETIDRNS--------PLAASVFALAKPEEGQVVFGQSKDQAGNIVVVELSKVTAEINPA 581 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + L ++ N+ L +V+ L+ V Sbjct: 582 YSTQIGAQLERVGNQQDLTNVLNVLRKNADVE 613 >gi|114327489|ref|YP_744646.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis CGDNIH1] gi|114315663|gb|ABI61723.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis CGDNIH1] Length = 656 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 140/645 (21%), Positives = 267/645 (41%), Gaps = 22/645 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML R + W ++ +L + F+ WG SD +G +V+V ++ +F ++ Sbjct: 14 MLATFRNSLNAWPVRLLFGLLVLAFVGWGFSDVWTQATGGGALVTVNGSRIEPQAFQATY 73 Query: 61 KQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++EL + Q++G R + + ++ L +V+ LD +GL + Sbjct: 74 QRELNRVRQQMGGGRQDVPPDIRKM-VAQQALQQMVTETVLDDLTRKMGLTTPDADIRQA 132 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 P F +F F + L G+ E Y+ + + ++ ++ G +L Sbjct: 133 TYAMPAFKNDQGQFDQARFQAVLNSVGLTEDSYVAYLRRTITERQLLDAIRAGASAPKIL 192 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + E RS D I + PA P++ L +++ + Y APEY+RI I+ Sbjct: 193 VAPLFAWQKEQRSGDMIEVPVSAAPAPPQPTDKQLERYWANHPARYTAPEYRRIKAIVLT 252 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 K IE+ +L+A Y+ N + +PE R V ++ P++ +A + G + + Sbjct: 253 PETVAKAIEVPEKDLRAWYDANGIHFDTPEKRDVSIVLVPDEAKAKALAEQWDNGADWKK 312 Query: 299 LAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + L +K+ +P L F K +H S G+ + V I+ Sbjct: 313 ISALANSDGGSAVELTGITKQQLPVPDLMPLAFETTKTDQIAGPVHDSLGWHVVRVGKIQ 372 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P+ SF+E+K++I + +A E++ + L+E A G+++D+ V+ Sbjct: 373 PATHRSFEEMKEEIKQILSTQRAMEQIYDRSSHLDEAFAQGSTLDDKLPDADAVAAISGQ 432 Query: 418 VDFAGKDVKGKEVAAIPYKEQ----LLFRVFGK---DDPLSKDHTVALPDG------SYM 464 +D G +G A IP +Q L+ F D P T G +Y Sbjct: 433 LDMQGNTREGTP-APIPGSDQLKQALITAAFSMKKGDAPHLVPVTPQSQPGTPAGPTTYF 491 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 VQ+++ IP R EV +V DW K A + +L +EGK+ D Sbjct: 492 AVQVEDIIPGALRPFPEVKAEVTADWIQDKRHHSQEEAATRAMLAL-QEGKSVADAVTLS 550 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVG 582 G +L + R E D +F+ + +G + + ++ ++ Sbjct: 551 GGTLKQIPLLTR-KGETGDVSADTRRALFALKLNDSTMVNTPDGFAIIRLTRILSPTEKD 609 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + +TQ + +DL ++ +A L+S+ V++ L+QR + Sbjct: 610 DPAAFSQAREQITQGLAEDLENTFLASLRSKADARVNNALLQRIM 654 >gi|258625370|ref|ZP_05720267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603] gi|258582361|gb|EEW07213.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603] Length = 619 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 125/627 (19%), Positives = 261/627 (41%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF +++ + L R G + ++ K L R ++ G Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + +I I ++ Q Y+++ +KY S E R V ++ ++++A L G Sbjct: 239 SADALKAEISIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY I Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + ++K + EV + I ++ +A + LE+ S+DE + K Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 +S + DF D + ++ A+P Q L K+D L+ + + + V+++E Sbjct: 415 ISAKVEHTDFISAD-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L+EV T V + +K ++ N++V K G + D+ G + Sbjct: 473 SRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIVTAL-KAGNS--DVLAENGVAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SKV P ++ Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+++ ++ L VI+ L+ + Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSTDIE 613 >gi|156935006|ref|YP_001438922.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Cronobacter sakazakii ATCC BAA-894] gi|156533260|gb|ABU78086.1| hypothetical protein ESA_02857 [Cronobacter sakazakii ATCC BAA-894] Length = 625 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 124/634 (19%), Positives = 257/634 (40%), Gaps = 28/634 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+S+ L S+ V Q++ + N+ Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + +++G + S L ++ L L+ A +DQ+ + L +V Sbjct: 60 NIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF + + + + G++ +Y L+ +V +G Sbjct: 120 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + + R V + + S + +++++ +N+++PE R+SYI Sbjct: 179 ESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + S DE+QA Y+K+++++ P+ + + EA LK+G F Sbjct: 239 DAAALAENA--SEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQGADFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G PD ++ L +KG + VI S G++I + Sbjct: 297 TLAKEKSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKEKGQLSDVIKSSVGFLIVRL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I P+ EV DI+ +++ KA + +++ + A + ++ EK + Sbjct: 354 DDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSD--AANNDNESLASAEKAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + +D +E+ P + + + G++ + + DG ++I + Sbjct: 412 KAVETGWFSRDAVPEEINFKPVADAVFGGNLLGENGTPGSNSDIITVDGDRAFVLRITDH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P ++ L EV V K K + + +A L+ K GK + K G + Sbjct: 472 KPQAEKPLAEVKDQVTALVKHQKALKAANEEAQNLLSAL-KAGKGDEAL-KAAGIAFSPV 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEK 587 R + + P + + I N + + V+ + + G P +K Sbjct: 530 KTFERTTQDTLTQPVFALP----LPAKDKPSYGIGNDMQGNVVLLALDEVRSGTMPDAQK 585 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 LTQ + D+++ L+ + + D Sbjct: 586 KAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDA 619 >gi|319898755|ref|YP_004158848.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73] gi|319402719|emb|CBI76266.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73] Length = 621 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 156/625 (24%), Positives = 302/625 (48%), Gaps = 16/625 (2%) Query: 10 RTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 +W AKIFL L + F++ WG+ ++ G+ + ++ + + ++ Sbjct: 2 NSWFAKIFLTALLLCFILLWGIPQ--LHTMNEKDFLTSGKSTITIDTYRLALADQSLRLA 59 Query: 69 --QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 +G + + + + +L+ L D+ + + + I +F Sbjct: 60 ITSHLGRMFTPDEIQRYKIPIFVLNQLQQDVLFDEQARKMKINLSKEAIARIIGNDNIFQ 119 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 D F+ D+F++ L + NE + ++YTK R ++ + GM+ ++ + Sbjct: 120 R-DRVFNRDLFLNYLQQLRTNESNFFNYYTKKEKRNQLILASLSGMKAPDIFYKALATYQ 178 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S + K Sbjct: 179 EEKRIADYLVIDLKKEEKIADPNQEILEKWFDTHKEKFRAPEYRTVSLFSMTSEKFLKPQ 238 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +IS +E+Q Y +N ++ +PE RT+E+L F +K AD A + + +G F L +E+ K+ Sbjct: 239 DISVNEIQTYYTQNASRFITPEKRTIEKLRFSTRKAADNAAKKIAEGLSFDALVKEEKKT 298 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LSDI+ G ++ +P LA IF L KKG + VI+ G VI V++I PS + ++ Sbjct: 299 LSDITKGPLAENELP-SHLASEIFEL-KKGQISAVINDLQGPVIIRVTHITPSTQIPLEK 356 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 V+KDI + A ++ Y +E G S+ E++++ ++ + +D GK + Sbjct: 357 VEKDIRQILAQNNAITYIRNKYTEIENARFEGASLTELAKQHRLSLRKI-TIDKTGKTTE 415 Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486 G + +P K+ LL ++ + + KD ++LP+G Y+W Q+ IPAR R L EV +V Sbjct: 416 GITLTDLPQKDVLLNAIYQSREDIDKD-PLSLPEGGYLWYQVDMIIPARYRTLSEVKQNV 474 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546 WK + + KA ++ + +K GK+ + LG + TT + R D+ +K G Sbjct: 475 IAQWKEEEIQRLLDEKAQGVLKQLAK-GKSLDSLATELGTTKQTTPALRRQDS-SKILGI 532 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDL 602 +G+ +F G + + + +V+K+T S + + + M+ +DL Sbjct: 533 EGVKALFYGAKDHYGIVKGVDAKNRIVYKITASIIPKDITAHTLLPDIRTNIDMMIREDL 592 Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYL 627 ++ ++ + +++ + L Sbjct: 593 KLEMLQAANKEHPIEINNLNYSQIL 617 >gi|293392541|ref|ZP_06636861.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582] gi|291424943|gb|EFE98152.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582] Length = 627 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 119/637 (18%), Positives = 257/637 (40%), Gaps = 24/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ + L SG V Q + + ++ Sbjct: 1 MMDNLRAAANNVVLKIILALIILSFVLTGVGNYLIGGSG-DYAAKVNGQVIERAQLEQAF 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ L ++ L L+ LDQ+ + +GL +V Sbjct: 60 QSERSRMQQQLGEQFSALAGNEGYMQQLRQQALSQLIDNMLLDQYAKKLGLSISDDQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F + +F + ++ + R G + Y + L V+ F Sbjct: 120 AIRKAPYFQ-TNGQFDNAKYLDLITRMGYSADNYAQSMRQQLLNQQVIQAFGNSGFVLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R V ++ + A + S+ L +++ + K+++ APE +SYI Sbjct: 179 ESDAMAALVLQERDVRLATIDLNALQAKQNVSDDELKEYYNQNKNSFIAPEQVEVSYIPM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + KI +++ ++ A Y+++K Y PE + + + EA L KG F Sbjct: 239 DAAAMQSKITVNDADISAYYDQHKSSYGQPERKNYSVIQLKTEAEAKAVLDELNKGADFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E+ + G PD + + L++KG + V+ S GY+I ++++ Sbjct: 299 TLAKEKSTDIISKRNGGELGWLEPDTTADELKEAKLSEKGQLSGVVKSSVGYLIVRLNDV 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P EV+ IA++++ KA + +++ E A + ++ E+ + Sbjct: 359 EPEKLKPLSEVRDSIADKVKQEKAVDAYYALQQKVSE--AATNDNESLASAEEAAGVKAA 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D E+ P + + + G++ + V +G +++ P Sbjct: 417 KTAWFTRDNVPAELNFKPVVQAIFDGSLIGENGSPGSNSDVINVEGDRAFVIRVSGHKPE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K ++ + +L++E K+GK + K G S ++ Sbjct: 477 GVEPFDKVKDHVAELVKRNKAVQQAKLQGEKLLVEL-KQGKGDEAL-KAAGLSFGAVQKM 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQEKD 588 R +++ VF+ P ++ + + + P E Sbjct: 535 ARAPEDSQL-----TESVFALPHPQQGKPVYGMSQDRQDNVVLIALEAVKPGTLPADEMK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 F + + DS++A L+ + + + Q+ Sbjct: 590 TFAGKMQESAIGVTFDSLLANLRKEAKIKMG-AAEQQ 625 >gi|304391667|ref|ZP_07373609.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130] gi|303295896|gb|EFL90254.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130] Length = 632 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 160/634 (25%), Positives = 296/634 (46%), Gaps = 13/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R W AKI L++L F +WG++ ++ S +++V +VG KVP F++++ Sbjct: 1 MLGALRGFVTGWTAKILLILLVASFALWGITGSILSGGDTTSVAAVGETKVPVREFLSAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q+ G + + AR G++++ L N+V+ ATLD+F GL ++ IA Sbjct: 61 NRNMNEVQQRAGRRLTRDEARIFGVEQRALGNVVAWATLDEFARVHGLALSDKQLAQMIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P FH ++ + F + + + E ++I+ R+ + F G + Sbjct: 121 ENPAFHDSTGSYNRETFRQAVFQAQMRESDFIEAQNASAVRSQLTRSFADGPILPDTFKA 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R +Y+ + A P+ L +FE K NY APEY+++ + Sbjct: 181 ALANYAQEQRVFEYLTITPAIAGEPAAPTAEQLKTYFEANKANYAAPEYRKLDLLSLRPE 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +E+S++E++A+Y+ +Y PE R V+Q+VFP+++ A+ A +SL++G F + Sbjct: 241 DLAASMEVSDEEIEADYQARISRYQEPERRRVQQIVFPSREAAEAAKKSLEEGAFFETVV 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E ++++D LG +K+ +P L D F L + + VI G FG VI V+ + + Sbjct: 301 AEADRTMADADLGLMAKDALP-AHLQDPAFGL-EVNAISDVIDGPFGSVIVRVTEVNEAR 358 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T EVK I N M + +A+ ++ + +E+ A G+S+ E + + + + VD Sbjct: 359 TTPLDEVKDTIKNAMALERAASRITSLSEEIEDSRAGGSSLAEAAPKFDLKIRSVE-VDA 417 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 G+ G ++ IP LL + F + + + ++W + E ARDR + Sbjct: 418 RGRTPDGTQLTDIPQSSDLLRQAFETEVGAQA-SALDIGAAGFVWYDVTEIAAARDRTQD 476 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL----TTNQINR 536 EV + DW + + V KA L G + R++ + S L TT +NR Sbjct: 477 EVTERLTTDWMAAERGKMVQQKAEALKARLD-GGASMRELSAEVDPSTLGAAPTTQPLNR 535 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISY 593 + F + F G + + ++ KV ++ D+ ++ Sbjct: 536 TGT-AQGFPSAATQEGFKGAEGHIAIVDGSEAGTSILLKVKEVRLPEAAAAPNVDQQVNI 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + DLL+ +IA L+ +Y VT + I L Sbjct: 595 ANEGAADDLLNQMIARLQGEYGVTQNPQTIDMAL 628 >gi|332141940|ref|YP_004427678.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551962|gb|AEA98680.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 630 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 115/641 (17%), Positives = 252/641 (39%), Gaps = 30/641 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ A + ++ + F+ G+ L S +G++ V +V +++ ++ Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-NGTTAVATVNGEEISAQELERAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + G + S K +LD L++ + Q ++GL ++ Sbjct: 60 QNQRAQMESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F +F ++ F + L + G ++ D+ +++ + + Sbjct: 120 TIVQMPEFQF-GGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++QA + R+ Y+++++ + ++A + ++ ++ E +++Y+ Sbjct: 179 EVEQANALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 V + + ++ + D ++ Y+ N Y + E R V ++ + +A+ + Sbjct: 239 SVEDLKGRVSVDEDAVRTYYDNNLGSYGTEEQRRVSHILIEAGDDADAAKAKAESLKAEI 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F LAE G F + D + ++ FSL GD + V+ FG Sbjct: 299 DSGADFAALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFG 358 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 Y + ++ +K + +F EV +I + + A EK E L E ++D+ + Sbjct: 359 YHVIKLTEVKEAQVKTFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAAN 418 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + ++ E+++ P + F ++ L+ D + L D + + Sbjct: 419 AVDLP---IQESVLFSRNTAPAELSS-PGLLDVAFSSELVEEGLNSD-IIELDDETVVVA 473 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ E P R + L+EV ++ K K+ E S A V + + G++ D Sbjct: 474 RVVEHQPQRTQSLDEVREGIEASVKAEKSKEAAESWAFD-VAQKVRAGESVEDELAAKSV 532 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVF--KVTNSKV 581 T + R + +FS +E V NG VV V + Sbjct: 533 EWETAANVQRA---GGTLARALVDTLFSLALEGDDQVDVATTVNGDVAVVMLEGVNPAPA 589 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + L Q+ + + I L++ VT+ + L Sbjct: 590 LESELGKSLKQRLAQVQGQRVYQQYIDALRANAEVTISEAL 630 >gi|262166048|ref|ZP_06033785.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223] gi|262025764|gb|EEY44432.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223] Length = 619 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 123/627 (19%), Positives = 259/627 (41%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF +++ + L R G + ++ K L R ++ G Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + +I I ++ Q Y ++ +KY S E R V ++ ++++A L G Sbjct: 239 SADALKAEIAIDDEAAQQYYHEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY I Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + ++K + EV + I ++ +A + LE+ S+DE + K Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 +S + DF + + ++ A+P Q L K+D L+ + + + V+++E Sbjct: 415 ISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L+EV V + +K ++ N++V K G + D+ G + Sbjct: 473 SRPETVLPLQEVKNQVVEQLSQLKGEQQALELGNKIVAAL-KAGNS--DVLAENGVAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SKV P ++ Sbjct: 530 LQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+++ ++ L VI+ L+ + Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSADIE 613 >gi|117921098|ref|YP_870290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. ANA-3] gi|117613430|gb|ABK48884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. ANA-3] Length = 621 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 123/637 (19%), Positives = 255/637 (40%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSKS-DVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + + ++R + VG Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + K +++++E QA Y+++K +Y S E R ++ + +A++ + L Sbjct: 239 NAADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA+ + L F + D S ++F+L +KG + V+ F Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPG-VMDPSFDTALFAL-QKGQHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D ++ Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K+V +++ +D +V K ++ F + L + Sbjct: 415 TAKVVGVEIKATPMFSRD----DVPTALNKPDVVKAAFSDTVLRQGLNSEVIELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++KE A L EV D+ + K + E +KA +L+ + Sbjct: 471 VIRMKEHHDAGTMPLAEVKADIAERLKQDQANEAARAKAQELMTQVK------------A 518 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVF-KVTNS 579 GA+ ++ ++ + + + F P V + NG + + KV + Sbjct: 519 GATDVSLTAKTKLGRGAQDVDAAIVGKAFQMPTPTATPVVDTVGLANGYAVIALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L ++ +I LK+ V Sbjct: 579 ESVSDELVNALKQRLNAQYSEADYRGLIESLKANAKV 615 >gi|84387739|ref|ZP_00990755.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01] gi|84377422|gb|EAP94289.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01] Length = 621 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 117/632 (18%), Positives = 245/632 (38%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ S L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + Q++ + Y PE ++SYI Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKGIELTDEQIEQYYSENPQAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ LG ++ + D + D+ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEDAAFALENIGDTTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S + EV +I ++ A ++ E LE+ S+D+ + Sbjct: 358 KLDEVKASQAQPYTEVAAEIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAEAINA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + V EV P Q + K+D L+ + + + V+++E Sbjct: 418 KITTTDFISQ----VDAPEVLMTPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L EV V V+ ++ LV E + + + Sbjct: 473 TRDETVLPLAEVKDQVVAALSAVQAEQQAVELGVSLVNELKQGN---EAVLADNNLEFTE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQ 585 I+R + VF+ + + VV +++ Sbjct: 530 LETIDRNS--------PLAASVFALAKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPA 581 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + L ++ N+ L +V+ L+ V Sbjct: 582 YSTQIGAQLERVGNQQDLTNVLNVLRKNADVE 613 >gi|300114008|ref|YP_003760583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus watsonii C-113] gi|299539945|gb|ADJ28262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus watsonii C-113] Length = 640 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 107/647 (16%), Positives = 246/647 (38%), Gaps = 41/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ A + + ++ +PF +WG+++ + G + SV +++ F ++ Sbjct: 1 MLQAIRSRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEAVAASVNGEEISTREFQLAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G E + +++ LV + ++GL + I Sbjct: 60 QNYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDAAAELGLGMSDSALSQVIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F G+ +F + + L+ +G+ Y L + + +D Sbjct: 120 SNEAFQGESGQFDSQRYEAVLSSQGLTPVAYEARLRSALLSEQLASSLRLSAFATQQEVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R V Y ++ + + S + Q+++ + + +R PE ++ Y+ Sbjct: 180 TIARLRHQKREVAYSIVPSANFHDAIQVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 I + L+ YE++K++Y PE R ++ Q++A+ + Sbjct: 240 SLATDIPLDEQTLRNFYEESKDQYRVPERRRASHILITIPPQGDEAVRQQAQEKAEAVLE 299 Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L++G+ F ++A+E G + LG F + + D + ++FSL + G + I Sbjct: 300 RLQQGEAFEEVAKEVSEDPGSAKKGGDLGFFGRG-VMDPAFEKAVFSLEETGVLSEPILS 358 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDE 403 FGY I ++ I+P F+ V++++A + R A E+ E + L+ +++ Sbjct: 359 KFGYHIIKLTGIEPGEVKPFEAVREELAQKYRQQIAEEQFYEQAEILDNLTYENPFTLEV 418 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461 + + G I +++ F ++ T+ L Sbjct: 419 AAESLGLSVETSEPFSQNGGS-------GIAANTKVVAAAFSEEVLREEMNSQTIELAPN 471 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + V++ + +PA + EEV +++ + + + LV + + + Sbjct: 472 DLVVVRLDKHLPADTKPFEEVREQIQEKLTLEQAKAQAQKRGEALVADLQQGESPETVLK 531 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV--------V 573 + R +++ + I + P P G + V Sbjct: 532 EEKEIVWNEKKWYAR---DDQDIPAEIIKLAYELPHPPSSKEPAFAGQALASGDYAVVGV 588 Query: 574 FKVTNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +KV N ++EK + + + Q+ + + I LKS+ + + Sbjct: 589 YKVQNGDPSKLEEKARRSLVQEMEQVHGEMVYRDFIQELKSKADIKI 635 >gi|258621306|ref|ZP_05716340.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573] gi|258586694|gb|EEW11409.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573] Length = 619 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 123/627 (19%), Positives = 261/627 (41%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF +++ + L R G + ++ K L R ++ G Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + + L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTLTLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + +I I ++ Q Y+++ +KY S E R V ++ ++++A L G Sbjct: 239 SADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY I Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + ++K + EV + I ++ +A + LE+ S+DE + K Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 +S + DF + + ++ A+P Q L K+D L+ + + + V+++E Sbjct: 415 ISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L+EV T V + +K ++ N++V K G + D+ G + Sbjct: 473 SRPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIVTAL-KAGNS--DVLAENGVAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SKV P ++ Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+++ ++ L VI+ L+ + Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSTDIE 613 >gi|59711407|ref|YP_204183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri ES114] gi|59479508|gb|AAW85295.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri ES114] Length = 618 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 119/637 (18%), Positives = 246/637 (38%), Gaps = 31/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR+ S KI L ++ F+ G+ L G VG +++ + F + Sbjct: 1 MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + + A K +LD +V+ A LD +D+GL ++ Sbjct: 60 QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KD KF +++ L R G + + + + L+R +V + Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + I LN A ++ +T+++ K + PE ++SY+ Sbjct: 179 EVQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKF 296 + + + I++ E++ Y+ N +KY + E R V ++ ++ +A + + G+ F Sbjct: 239 SGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDF 298 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A++ + + SLG + I D D+ F LAK GD + ++ +FG+ I Sbjct: 299 ATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQ 357 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIV 411 ++ I+ T EV DI + + A++ L E+ S+D+ + Sbjct: 358 LNGIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAFESPDSLDDAAEAVDAK 417 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + A + A Q ++ K+D L+ D + + + V++++ Sbjct: 418 IVTSDFFSQA----DAPKALADSAVLQAIYSPEVKEDGLNSD-VIEIAPEHVIVVRVEDV 472 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 L+EV V + +E A ++ +K + N G + Sbjct: 473 RDEMVLPLDEVKDAVIARLSQAQGEQEALELAQNVISGLNKG---DNSVMANNGLAFAEA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVGPVQEKD 588 I+R D P + + G +V + ++ Sbjct: 530 RMISRNDELANDVYR------LEKPADGKSTYAQVMDRQGNHVIVALDSVLELNDSNMSS 583 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + L + + L + + LK S + L+++ Sbjct: 584 QIATGLLRSQTQQDLTATLDTLKE--STEISYPLLEQ 618 >gi|262171087|ref|ZP_06038765.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451] gi|261892163|gb|EEY38149.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451] Length = 619 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 125/627 (19%), Positives = 262/627 (41%), Gaps = 24/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +V+ L+Q +GL G+V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDGQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF +++ + L R G + ++ K L R ++ G Sbjct: 120 MILEMPQFQSQ-GKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 179 EVNLQDQLVSQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + +I I ++ Q Y+++ +KY S E R V ++ ++++A L G Sbjct: 239 SADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+E+ G + SLG ++ + D + + ++L +KG + ++ FGY I Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + ++K + EV + I ++ +A + LE+ S+DE + K Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEAA---KA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 +S + DF + + ++ A+P Q L K+D L+ + + + V+++E Sbjct: 415 ISAKVEHTDFISAE-QAPDLLAVPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 S P L+EV T V + +K ++ N++V K G + D+ G + Sbjct: 473 SRPETVLPLQEVKTQVVELLSQLKGEQQALELGNKIVTAL-KAGNS--DVLAENGVAFGE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SKV P ++ Sbjct: 530 VQMIDRSSPLANTVYSMVKPQ--DGAKGYAQAKDFDGNVVVIELDKVESKVTPA-YHEQI 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L+++ ++ L VI+ L+ + Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQSTDIE 613 >gi|114048051|ref|YP_738601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7] gi|113889493|gb|ABI43544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7] Length = 621 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 123/637 (19%), Positives = 255/637 (40%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGS-QSDVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + + ++R + VG Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 + + K +++++E QA Y+++K +Y S E R ++ + +A++ + L Sbjct: 239 NSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAVAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA+ + L F + D S ++F+L +KG + V+ F Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPG-VMDPSFDTALFAL-QKGQHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D ++ Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K+V +++ +D +V A K ++ F + L + Sbjct: 415 TAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDTVLRQGLNSEVLELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++KE A L EV D+ K + E +KA +L+ + Sbjct: 471 VIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQVK------------A 518 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNS 579 GA+ +T ++ + + + F P +V + NG + + KV + Sbjct: 519 GAADVTLTAKAKLGRGAQDVDAAIVGKAFQMPTPSATPVVDTVGLANGYAVIALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L ++ +I LK+ + Sbjct: 579 ESVSDELVNALKQRLNAQYSEADYRGLIESLKANAKI 615 >gi|54309794|ref|YP_130814.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum SS9] gi|46914232|emb|CAG21012.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum SS9] Length = 623 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 119/632 (18%), Positives = 244/632 (38%), Gaps = 26/632 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + K+ L ++ F+ G+ L S + ++ + F ++ Sbjct: 1 MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYLAGGS-QPAAAKINGTEISQNDFEQAY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ + + +LD +++ ++Q ++GL + Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F +D + L R G ++ ++ + RT + G + Sbjct: 120 TITSMPEFQR-DGQFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFTLDS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L ++ + R V + L+ A ++ ++E+ + P+ +++YI Sbjct: 179 ELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKAFYEQNPQMFTRPDQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292 + +++S+++++A YE++K+KY S E R V ++ A+ L Sbjct: 239 SGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDA 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +LA L F + + D + D+ F LA GD + V+ SFGY Sbjct: 299 GADFAELALSSSDDTYSGKDGGKLDWFERG-VMDPAFEDAAFGLANNGDISGVVKSSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407 I + +K S F +V +I ++R +A+E + +L E + S+D+ + Sbjct: 358 HIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAFEMPDSLDDAAAV 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + + + V A P Q LF ++D L+ D + + + V+ Sbjct: 418 VNATVHTTDFISQ----IDAQGVLANPAVMQALFSAEVREDGLNSD-VIEIAPEHVVVVR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + +S +EV VK + K + +KA+ L+ + G D + G S Sbjct: 473 VDDSRDEMVLPFDEVSAKVKAQLASQKGEQNAQAKADDLIAGL-RAGNT--DALEAEGLS 529 Query: 528 LLTTNQINRM--DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 I+R D + V V + N + KV + V Sbjct: 530 FGEEQTISRSGPDRMVSQVAFSLTKPVGDKSVYGMTRDATGNVQIIALDKVIDVDVAKEA 589 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 F + QM + + + + L+ V+ Sbjct: 590 ISSDFAKQVEQMNAQQDVAATLQALRDTAEVS 621 >gi|197334554|ref|YP_002155561.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11] gi|197316044|gb|ACH65491.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11] Length = 618 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 118/637 (18%), Positives = 246/637 (38%), Gaps = 31/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR+ S KI L ++ F+ G+ L G VG +++ + F + Sbjct: 1 MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLVG-GGQPLAAKVGEREITRNEFEQVY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + + A K +LD +V+ A LD +D+GL ++ Sbjct: 60 QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KD KF +++ L R G + + + + L+R +V + Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + I LN A ++ +T+++ K + PE ++SY+ Sbjct: 179 EVQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKF 296 + + + I++ E++ Y+ N +KY + E R V ++ ++ +A + + G+ F Sbjct: 239 SGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDF 298 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A++ + + SLG + I D D+ F LAK GD + ++ +FG+ I Sbjct: 299 ATVAKDASQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQ 357 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIV 411 ++ I+ T EV DI + + A++ L E+ S+D+ + Sbjct: 358 LNGIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAFESPDSLDDAAEAVDAK 417 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + A + A Q ++ K+D L+ D + + + V++++ Sbjct: 418 IVTSDFFSQA----DAPKALADSAVLQAIYSPEVKEDGLNSD-VIEIAPEHVIVVRVEDV 472 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 L+EV V + ++ A ++ + + N G + Sbjct: 473 RDEMVLPLDEVKDAVIARLSQAQGEQKALELAQNVISGLNNG---DNSVMANNGLAFAEA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVGPVQEKD 588 I+R D PV+ + G +V + ++ Sbjct: 530 RMISRNDELANDVYR------LEKPVDGKSTYAQVMDRQGNHVIVALDSVLELNDSNMSS 583 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + L + + L + + LK S + L+++ Sbjct: 584 QIATGLLRSQTQQDLTATLDTLKE--STEISYPLLEQ 618 >gi|242240288|ref|YP_002988469.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya dadantii Ech703] gi|242132345|gb|ACS86647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech703] Length = 626 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 131/637 (20%), Positives = 257/637 (40%), Gaps = 30/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V K+ L ++ F++ G+ D L SG V Q++ + + Sbjct: 1 MMDNLRAAANNVVLKVILALIVGSFVLTGVGDYLIRGSG-DYAAKVNGQEISRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + +G ++ L K+ L L+ +DQF ++GL +V Sbjct: 60 QNERNRQQEMLGENFSALAANEGYMQQLRKQALSQLIDDTLIDQFARNLGLNISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +N+F ++ +++++ + G+ Y K L +V G Sbjct: 120 AIFSVPAFQ-TNNRFDNEKYLAQVQQLGLTPDVYAQLLRKQLVTQQLVRGLGGSNFQLPQ 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D ++R++ ++ S+ + ++ + Y APE ++SYI+ Sbjct: 179 EIDNLVAIAAQDRTIRTATIDLDARAKTQTASDDEIQNFYNQNSSRYLAPEQFKVSYIML 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D KI + + + + YE++K ++ PE R + N+ +A + L KG F Sbjct: 239 DAAAIMDKISVDSAAVSSYYEQHKSEFTQPERRKYSIIQLKNEADAKAVLEQLHKGADFA 298 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG D +L +KG + V+ S GY+I + Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDGNSTVD---EIKQANLQQKGQLSDVVKSSVGYLIVRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+ S EV+ D+ ++++ KA ++ ++L E A + + EK I Sbjct: 356 DDIQVQRVRSLDEVRGDLGDKVKREKALDEFYAQQQKLSE--AASNDNESLVSAEKASGI 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR-VFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D + K+ +L + G++ + V DG +V +I E Sbjct: 414 KARQTDWFTRDNIPAALDFPQVKQAILNGTLTGENGAPGSNSDVINVDGDRAFVLRISEH 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V V + K K ++ A +++ + K+GKN D G S Sbjct: 474 KPEATQPLDKVRDQVVQAIKRQKAEQQARVDAEKILADL-KQGKN--DTLTAAGLSFSAP 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKV--GPVQ 585 ++ + + VFS P + + V+ + N K Sbjct: 531 RVMSSVGRGDVMS-----EAVFSLPHPQKDKVSYGIAQDQVGNIVIVALDNVKARELEAA 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 +K +F + + Q L DS+IA L + + + D Sbjct: 586 QKKQFAAQIEQSALATLFDSLIANLHDEAKIKLGDAA 622 >gi|113970826|ref|YP_734619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4] gi|113885510|gb|ABI39562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4] Length = 621 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 125/637 (19%), Positives = 257/637 (40%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S S V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSQS-DVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + + ++R + VG Sbjct: 120 AIKSEPAFQ-TDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + K +++++E QA Y+++K +Y S E R ++ + +A++ + L Sbjct: 239 NSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA+ + L F + D S ++F+L KKG+ + V+ F Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPG-VMDPSFDTALFAL-KKGEHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D ++ Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSYEVP--DTLAE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K+V +++ +D +V A K ++ F + L + Sbjct: 415 TAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDTVLRQGLNSEVLELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++KE A L EV D+ K + E +KA +L+ + Sbjct: 471 VIRMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQVK------------A 518 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNS 579 GA+ +T ++ + + + F P +V + NG + + KV + Sbjct: 519 GAADVTLTAKAKLGRGAQDVDAAIVGKAFQMPTPSATPVVDTVGLANGYAVIALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L ++ +I LK+ + Sbjct: 579 ESVSDELVNALKQRLNAQYSEADYRGLIESLKANAKI 615 >gi|218710170|ref|YP_002417791.1| peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32] gi|218323189|emb|CAV19366.1| Peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32] Length = 621 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 119/628 (18%), Positives = 247/628 (39%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ S L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + Q++++ Y PE ++SYI Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKTIELTDEQIEQYYQENPAAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ LG ++ + D + ++ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEEAAFALENIGDTTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S + EV DI ++ A ++ E LE+ S+D+ + Sbjct: 358 KLDEVKASQAQPYTEVATDIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAEAINA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + A EV P Q + K+D L+ + + + V+++E Sbjct: 418 KITTTDFISQA----DAPEVLMTPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L EV V VK ++ LV E + + + Sbjct: 473 TRDETVLPLAEVKDQVVAALSAVKAEQQAVELGVSLVNELKQGN---EAVLADNSLEFTE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589 I+R N + V + V + + VV +++ + Sbjct: 530 LETIDR----NSPLAASVFALVKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAYSTQ 585 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ N+ L +V+ L+ V Sbjct: 586 LGAQLERVGNQQDLTNVLNVLRKNSDVE 613 >gi|144898531|emb|CAM75395.1| peptidyl-prolyl cis-trans isomerse D [Magnetospirillum gryphiswaldense MSR-1] Length = 645 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 143/628 (22%), Positives = 290/628 (46%), Gaps = 9/628 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 ML+ R AS++WV K+ +L + FL WG+ D + G ++VG + + + Sbjct: 22 MLDSFRNASKSWVIKVLFGLLVLSFLAWGVEDVARNGLFGRGPAITVGDRDFAAAEVMVE 81 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +K+++ + + G ++ AR +GL + +D++V+ +D+ + L V ++ Sbjct: 82 FKRDMDQLQPQFGGKLSMADARKLGLMDRTIDSIVTRTLVDEAARGLSLATSDDEVIAKV 141 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A P F + +F D+ L+R G +E+E++ + RT + GG+ L Sbjct: 142 AAEPSFRNQLGQFDRDLLRQALSRAGWSEQEFMRQEKDNILRTQLAESLSGGLTAPQALT 201 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R+ E R + + + +P A P A L Q+++ +++ APE++ I+ +L Sbjct: 202 EPLIRWKRETRQAETVSIKASSMPQPAAPDAATLEQYYKANANSFMAPEFRAITALLLRT 261 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + ++++ L Y+ ++++ SPE RTV Q+V + AD+A + +K GK + Sbjct: 262 TDAGRGLTVTDEMLTEAYKAREDEFHSPERRTVSQIVLADDASADKAAEMVKAGKDIKVI 321 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A++ G ++ I LG K +PD LA +F + + G T + + G+ +A V+ I Sbjct: 322 AKDLG--VNVIELGLVEKGDLPD-ELAGPVFDVGQ-GALTQPVKSALGWHVAKVTAITAE 377 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T S EV++ +A + K+ +++ E ++E+ L G +++E + R ++ + + +D Sbjct: 378 KTRSLAEVREMLAADILREKSMDRITELTNQVEDSLGGGATLEETATRFQLPLVRIAAMD 437 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G+ GK V +P E L F + ++ + +++ P + + L Sbjct: 438 AKGRAPNGKPVTDLPGGESFLDVAFHTEQG-TESQLTEMDGNGLFLLRVDSITPPQPKVL 496 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV T+ W+ + + A+++ E K G+ + ++L T+ R Sbjct: 497 SEVRTEAVAAWQAEQRQAAAKALADKI-AERVKAGEPLAKVAQSLSLKAETSAPFTREGG 555 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQEKDKFISYLTQ-M 597 E ++ +F G V+ P +G + KV + + I T Sbjct: 556 EASKMPPAIVTALFDGKPGRVEAAPSRDGWMVAQLDKVMAFDAKADAKAAEQIRKRTNSA 615 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ DL+D IA L + V V + + R Sbjct: 616 VSVDLIDQYIAALNVEMGVKVDRSQLSR 643 >gi|260773190|ref|ZP_05882106.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP 69.14] gi|260612329|gb|EEX37532.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP 69.14] Length = 619 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 119/631 (18%), Positives = 259/631 (41%), Gaps = 32/631 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + KI L ++ + F+ G+ + + G++ VG+ ++ F ++ Sbjct: 1 MMERLREGVNSIAVKIILGLIILSFIFAGVGNYIVG-GGNNAAAKVGKTEISRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ A L + +LD++++ ++Q + +GL +V Sbjct: 60 QNERNRMQSQLGDYFSTLLADPTYVASLRRSVLDSMINDILIEQHAQSLGLRVSDNQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +++ S L R G + ++ + L R +V Sbjct: 120 AIIAMPEFQSA-GQFDQNIYQSALRRAGFTPDAFAEYMRRSLVRDQLVAALQTSEFTLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + R V I L ++ + Q++++ D Y PE RISYI Sbjct: 179 EVEGLSALVAQARDVRTITLPTTDFAKDVQLTDQEIEQYYQQNDDRYTRPEQMRISYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ I I++++ +A Y+ +++KY S E R V ++ +++ A L G Sbjct: 239 AAQQLKEAITITDEQTKAFYDAHQDKYASKEQRKVSHIMIQGDDEQAAQAILDQLHNGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F QLA+E+ + + LG + + D + + F+L + G+ + ++ FGY + Sbjct: 299 FAQLAKEKSQDIGSSQEGGELGWIEPDTM-DAAFESAAFALQQVGEISGLVKSDFGYHVI 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + +K +++V +I +++ +A ++ + LE S D + K + Sbjct: 358 KLDELKAPVIKPYEQVAVEIKAELQDQQAVDRFYQLQTELERIAFE--SPDSLDEAAKAI 415 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 D+ DF + + + P Q L + K+D L+ D + + + V+++++ Sbjct: 416 GADIQHTDFISV-AELPAILSAPAVIQALRQPEVKEDQLNSD-AIEIAPEHVVVVRVEQT 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P L EV + +K ++ AN LV + + D + L Sbjct: 474 RPEIILPLAEVREQIVATLSRLKAEQQALQLANDLVTGLNAGDNSLLDTHQ------LAF 527 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG-PVQE 586 ++I RMD VFS P V + + VV + Q Sbjct: 528 SEIQRMDR-----SSPLAEIVFSMPKPEGEHHVYAHGKDAQGNVVVIALAAVTTEVDPQL 582 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + L+++ + ++ ++ L+ + Sbjct: 583 NQQIGAQLSRIGLQQNVEGILGVLRQNTKIQ 613 >gi|86148518|ref|ZP_01066806.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222] gi|85833709|gb|EAQ51879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222] Length = 621 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 118/628 (18%), Positives = 244/628 (38%), Gaps = 26/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + + G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G A K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFAQMLADPTYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F +F +V+ S L R G + + + ++ + L R +V G Sbjct: 120 MILEMPQFQTA-GQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + + L+ + + ++ + ++++ Y PE ++SYI Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKNIELTDEQIELYYQENPAAYTRPEQAKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++E+S++E Q Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE+ LG ++ + D + D+ F+L GD T ++ FGY I Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERD-VMDPAFEDAAFALVNIGDTTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410 + +K S + EV +I ++ A ++ E LE+ S+D+ + Sbjct: 358 KLDELKASQAQPYTEVAAEIKTELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAEAINA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + A EV P Q + K+D L+ + + + V+++E Sbjct: 418 KITTTDFISQA----DAPEVLMTPAVMQAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L EV V VK ++ LV E + + + Sbjct: 473 TRDETVLPLAEVKDQVVAALSAVKAEQQAVELGVSLVNELKQGN---EAVLADNSLEFTE 529 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDK 589 I+R N + V + V + + VV +++ + Sbjct: 530 LETIDR----NSPLAASVFALVKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAYSTQ 585 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ N+ L +V+ L+ V Sbjct: 586 LGAQLERVGNQQDLTNVLNVLRKNADVE 613 >gi|312113155|ref|YP_004010751.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] gi|311218284|gb|ADP69652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] Length = 633 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 146/637 (22%), Positives = 268/637 (42%), Gaps = 18/637 (2%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 + ++RK + I +L F I + +V +VG + F +++ Sbjct: 1 MHMLRKVA----VFIMFAILIGAFAISMGGNYYGDRERRQSVATVGSASISPEDFRRAYQ 56 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + L +SQ+ G ++ A++ GL ++L L+ A LD +++G+ V I Sbjct: 57 RVLENVSQQAGRRISPAEAQAFGLPNRVLQGLIQDAALDLEAKELGVGLSEEGVRRGITS 116 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +F K FS D + L G + Y L R + G+F G LL+ Sbjct: 117 LDVFQDK-GVFSADKYHRFLQNIGYTAPFFEQEYRGDLIRRQLRGVFDGSGVVPKALLEA 175 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 ++ E R++ Y L A+ P+ A L ++E K + PE +++S + Sbjct: 176 YNKYGNEQRTLAYFTLTPEAAGAVPAPTEAELQAFYEDRKPQFMTPELRKVSALAISPQT 235 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA 300 K + I +++L+AEY Y PE R +E + F + +AD A+ LK G + +A Sbjct: 236 VAKSLTIPDEDLKAEYAAKASVYSVPERRKLEIVPFKTRADADAAYAKLKSGARDLLGVA 295 Query: 301 EEQGKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 ++ G S +I G S++ + D ++ FS +KG + + G VI V Sbjct: 296 KDAGFSQPEIDAGVVSRKELADKFGINDAIVKEAFS-TEKGWTSRPVDGPVSTVIMRVLE 354 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + P SF EVK I + T+A + + K EE + G + + +++ + ++ Sbjct: 355 VVPGQERSFAEVKDQIRADLAKTRAQSEFQRLIKAFEEDRSTGIPLADSAKKLNLP-LEE 413 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 +D + KD GK V L K D ++ + L G Y W ++ + + R Sbjct: 414 VTIDRSAKDADGKPVTVSVVPAAQLADAAFKSDVGVENEAIRLQGGGYAWFEVADVVKPR 473 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + LEEV +V+ W+ + + ++S+A LV K G+ + K++GA++ T+ + Sbjct: 474 QKPLEEVKGEVEAAWRADQVRDRLASRARDLVARLDK-GETIDAVAKSVGATVKTSQPLK 532 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKDKFIS 592 R E+ I+Q F+ P ENG S VF K+T ++ Sbjct: 533 RNGKEDGV-PPAAIAQAFTLPEGGAGSAGSENGTSRAVFQLAKITQPGPLAEEQAKGLEQ 591 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 L ++ D + + + +++ G Sbjct: 592 QLAGAISDDNFSGFLNRITTASPISIDRKAFANVSGG 628 >gi|327484462|gb|AEA78869.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio cholerae LMA3894-4] Length = 616 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 118/627 (18%), Positives = 248/627 (39%), Gaps = 27/627 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S ++ ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGNNAAA----NAEISRGDFEQAY 56 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 57 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 116 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G Sbjct: 117 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + PE ++SY+ Sbjct: 176 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 235 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 236 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 295 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 296 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 354 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 355 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV P Q L K+D L+ + + + V+++E Sbjct: 415 TVVHTDFISAE----QAPEVLTTPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 469 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 470 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 526 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I+R Q G + + + + SK+ P ++ Sbjct: 527 LQMIDRSSPLANTVYAMVKPQ--EGEKVYAQAKDFDGNIVVIELSKVESKLTPA-YHEQI 583 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L ++ ++ L VI+ L+ + Sbjct: 584 ATQLERIGSQQDLAGVISVLRQNTDIE 610 >gi|120599410|ref|YP_963984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. W3-18-1] gi|146292594|ref|YP_001183018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens CN-32] gi|120559503|gb|ABM25430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. W3-18-1] gi|145564284|gb|ABP75219.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens CN-32] gi|319425896|gb|ADV53970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens 200] Length = 618 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 116/634 (18%), Positives = 254/634 (40%), Gaps = 39/634 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S + V K+ + ++ Sbjct: 1 MLEKIRDGSQGVIAKSILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDKITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ +GL ++ Sbjct: 60 QSERSRMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAASTMGLRVSDEQIIT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF ++ + + L + G + + + ++R + VG Sbjct: 120 AIKLEPAFQ-TDGKFDNERYQAILRQLGYQPQSFRNMMRVDMTRRQLTAALVGTEFVLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANATVTDEQVKNYYDANQGQFMSPEQVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292 + + K ++++E QA Y+++K +Y + E R ++ ++ A + + L Sbjct: 239 NAADFAKNSPVTDEEAQAYYDEHKTQYLANEKRLAAHILINADQDDAATKAADLAKQLDN 298 Query: 293 GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F +LA+ G + + + + + ++F+L KG+ + V+ FGY Sbjct: 299 GADFAELAKAHSDDRLSAEQGGKLEWFEPGVMEPTFDAALFAL-NKGEHSAVVKTGFGYH 357 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I + +++ TV F +VK I Q++ KA ++ +L + D ++ K Sbjct: 358 IIKLLDVQAGATVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLAETAK 415 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467 ++ + + +D + + K L+ F L + L + ++ Sbjct: 416 VLGVSIKTTPLFSRDDAPEGLN----KPDLVKAAFSDTVKLKGLNSEVIELEPNHVVVIR 471 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 +KE A L EV ++ + K + E +KA +L+ + Sbjct: 472 VKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMTQVK---------AAATDLG 522 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNSKVG 582 L++ ++ R + + + + F P +V + NG + + KV ++ Sbjct: 523 LVSKVKLGRGE---QNVDAAIVGKAFQMPTPSSTPVVDIVGLANGYAVIALDKVNAAEGV 579 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + L ++ +I LK+ V Sbjct: 580 SDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 613 >gi|153827658|ref|ZP_01980325.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2] gi|149737864|gb|EDM52769.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2] Length = 592 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 111/548 (20%), Positives = 227/548 (41%), Gaps = 21/548 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + F + + L R G + Y ++ K L R ++ G + Sbjct: 120 LILEIPQFQSQ-GVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + I L+ S+ + Q+++ + + E ++SY+ Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRSEQVKVSYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++ + + Q Y+++ +KY + E R V ++ ++++A L G Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + L SLG + + D + + F+L +KG + ++ FGY I Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKI 410 + +IK + EV++ I ++ +A + LE+ S+DE ++ Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEAAKAISA 417 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + + EV IP Q L K+D L+ + + + V+++E Sbjct: 418 TVVHTDFISAE----QAPEVLTIPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P L+EV + V + +K ++ NQLV K G+ D+ G S Sbjct: 473 FRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGE 529 Query: 531 TNQINRMD 538 I+R Sbjct: 530 LQMIDRSS 537 >gi|217973906|ref|YP_002358657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS223] gi|217499041|gb|ACK47234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS223] Length = 621 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 129/637 (20%), Positives = 251/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S + V + + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ + +GL ++ Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P F D KF +D + + L + G + + D ++R + VG Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + K +S++E QA YE++K +Y S E R ++ + +A++ + L Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+ L F + D + ++F+L KG + V+ F Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D +S Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K V +D+ +D V A K L+ F + L + L + Sbjct: 415 TAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V++KE A L EV ++ + K + E +KA +L+ + + + K Sbjct: 471 VVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKA- 529 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSK 580 ++ + + + F P +V + NG + V N+ Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKINAA 578 Query: 581 VGPVQE-KDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 G E + L ++ +I LK+ V Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615 >gi|260596813|ref|YP_003209384.1| periplasmic folding chaperone [Cronobacter turicensis z3032] gi|260215990|emb|CBA28646.1| Peptidyl-prolyl cis-trans isomerase D [Cronobacter turicensis z3032] Length = 645 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 126/636 (19%), Positives = 257/636 (40%), Gaps = 32/636 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+S+ L S+ V Q++ + N+ Sbjct: 21 MMDNLRAAANHVVLKIILGLIILSFILTGVSNYLIG-GNSNYAAKVNDQEISRAQLENAV 79 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + +++G + S L ++ L L+ A +DQ+ + LE +V Sbjct: 80 NIERNNLERRMGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLEISDEQVRQ 139 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D KF + + + + G++ +Y L+ +V +G Sbjct: 140 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPG 198 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 DQ + + R + + S + +++++ +N+++PE R+SYI Sbjct: 199 ESDQFAALFAQQRQARTATIVVDALAEKQQVSEQEIKDYYQQHANNFQSPEQFRVSYIKL 258 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + S DE+QA Y+K+++++ PE + + EA LK+G F Sbjct: 259 DAAALAENA--SEDEIQAYYDKHQDEFGQPERNRYSLIQTKTEAEAKAILAQLKQGADFA 316 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G PD ++ L KG + VI S G++I + Sbjct: 317 TLAKEKSVDVITARNGGDMGWLEPGTTPD-EFKNA--GLKDKGQLSDVIKSSVGFLIVRL 373 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + P+ EV DI+ +++ KA + +++ + A + + EK + Sbjct: 374 DDTTPAKVKPLSEVHDDISAKVKQEKALDAFFALQRKVSD--AANNDNESLVSAEKAAGV 431 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D E+ P + + + G + + + DG +V +I + Sbjct: 432 KAVDTDWFSRDAVPVELNFKPVTDAVFGGNLLGANGTPGSNSDIITVDGDRAFVLRITDH 491 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P ++ L +V V K K + + +A +L+ K GK + K G + Sbjct: 492 KPQAEKPLADVKEQVTALVKHQKALKAANEEAQKLLSAL-KAGKGDEAL-KAAGIAFSPA 549 Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585 R + VF+ P + + I N + + V+ + + + G P Sbjct: 550 KTFERTTQD------TLTQPVFALPLPAKDKPSYGIGNDMQGNVVLLALDDVRSGTMPDA 603 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 +K L Q + D+++ L+ + + D Sbjct: 604 QKKAMGQRLIQNNAEIAFDALLKGLRKDAKIKLGDA 639 >gi|292490923|ref|YP_003526362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] gi|291579518|gb|ADE13975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] Length = 637 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 111/644 (17%), Positives = 255/644 (39%), Gaps = 38/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR ++ A + + ++ +PF +WG+++ F G + SV +++ F ++ Sbjct: 1 MLEAIRSRAQGIFAWVIVGLITIPFALWGINNY-FREGGEALAASVNGEEITTREFRAAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + + E +++L+ L+ + ++GL + I Sbjct: 60 QRYTQQLRFLMREGFSEEMLDDPATKQRVLEGLIEQRLVLDAAGELGLGMSDSELSKVIH 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F + +F + S L +G+ Y L + + ++ Sbjct: 120 NNEAFQDETGQFDFQRYESVLNSQGLTTAAYEARLRLSLLSEQLASTLHLSAFATQQEME 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R + Y ++ + S+ L Q++E++ D +R PE + Y+ Sbjct: 180 DIARLRHQEREIGYGIVPSSKFRDAIQISDEELRQYYEEHPDEFRTPERVAVDYLRLTAK 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 I + L+ Y ++K+++ +PE R ++ +++A+EA + Sbjct: 240 SLATDIPVDEQTLRDLYAESKDQFGTPEQRRASHILVQVPQGGDDAARQAAREKAEEALR 299 Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L++G+ F ++A+E G + LG F + + D + ++ FSL K GD + + Sbjct: 300 RLQQGEPFEEVAKEVSEDPGSAQQGGDLGFFGRG-VMDPAFEEAAFSLEKVGDLSEPVLS 358 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDE 403 FGY I ++ I+ SF+EV++++A + R A E E + L+ +++ Sbjct: 359 KFGYHIIQLTGIQRGEAPSFEEVREELAQKYRQQLAEEHFYEQAETLDNLTYENPFTLEV 418 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + ++ +G G + A P F + ++ T+ L Sbjct: 419 AAEALELPIETSEPFSRSG----GSGIGANPKVVTAAFSEEVLQEEMNSR-TLELGPNDL 473 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + +++K+ PA + EEV ++++ + + + + LV E ++G+ + Sbjct: 474 VVLRVKKHFPADIKPFEEVREKIQENLTLERAKAKAREQGDALV-ERLRQGEAPESVFAG 532 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGLSYVV--FKV 576 N+ + + + + P + P+ +G VV + V Sbjct: 533 E----EAWNEKKFYSRRGEGIPREILKMAYGLPHPQSESPVFAGQPLGSGDYAVVGLYTV 588 Query: 577 TNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + + + EK + + QM + I L+++ + + Sbjct: 589 KDGDLKQLDEKARQSLAQEVEQMHGQVAYRGFIDELRAEADIKI 632 >gi|304409715|ref|ZP_07391335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS183] gi|307304071|ref|ZP_07583824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica BA175] gi|304352233|gb|EFM16631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS183] gi|306912969|gb|EFN43392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica BA175] Length = 621 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 252/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S + V + + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ + +GL ++ Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P F D KF +D + + L + G + + D ++R + VG Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + K +S++E QA YE++K +Y S E R ++ + +A++ + L Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+ L F + D + ++F+L KG + V+ F Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D +S Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K V +D+ +D V A K L+ F + L + L + Sbjct: 415 TAKAVGVDIKATPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V++KE A L EV ++ + K + E +KA +L+ + + + K Sbjct: 471 VVRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKA- 529 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579 ++ + + + F P +V + NG + V KV + Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L ++ +I LK+ V Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615 >gi|126173842|ref|YP_001049991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS155] gi|125997047|gb|ABN61122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS155] Length = 621 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 252/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S + V + + ++ Sbjct: 1 MLEKIRDGSQGLIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ + +GL ++ Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P F D KF +D + + L + G + + D ++R + VG Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + K +S++E QA YE++K +Y S E R ++ + +A++ + L Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+ L F + D + ++F+L KG + V+ F Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D +S Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K V +D+ +D V A K L+ F + L + L + Sbjct: 415 TAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V++KE A L EV ++ + K + E +KA +L+ + + + K Sbjct: 471 VVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKA- 529 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579 ++ + + + F P +V + NG + V KV + Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L ++ +I LK+ V Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615 >gi|153000126|ref|YP_001365807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS185] gi|160874748|ref|YP_001554064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS195] gi|151364744|gb|ABS07744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS185] gi|160860270|gb|ABX48804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS195] gi|315266990|gb|ADT93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS678] Length = 621 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 252/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ +AK LV++ + F G+S L S + V + + ++ Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTT-DVPAAEVNGDIITKAELEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ +DQ + +GL ++ Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P F D KF +D + + L + G + + D ++R + VG Sbjct: 120 AVKTEPAFQ-TDGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+ Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + K +S++E QA YE++K +Y S E R ++ + +A++ + L Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+ L F + D + ++F+L KG + V+ F Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPG-VMDPAFDAALFAL-NKGQHSAVVKTDF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + +++P TV F +VK I Q++ KA ++ +L + D +S Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVP--DTLSE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K V +D+ +D V A K L+ F + L + L + Sbjct: 415 TAKAVGVDIKTTPLFSRD----NVPAALNKPDLVKAAFSETVMLKGLNSEVIELEPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V++KE A L EV ++ + K + E +KA +L+ + + + K Sbjct: 471 VVRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQELMAQVKAGAMDLGLVAKA- 529 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579 ++ + + + F P +V + NG + V KV + Sbjct: 530 -----------KLGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L ++ +I LK+ V Sbjct: 579 EGVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615 >gi|332992311|gb|AEF02366.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas sp. SN2] Length = 630 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 117/641 (18%), Positives = 260/641 (40%), Gaps = 30/641 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ A + ++ + F+ G+ L S SG++ V +V +++ + Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERGY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + G + S + +LD L++ + Q +++GL ++ Sbjct: 60 QNQRAQMESQFGESIAQLFSSEQYLSDFRRNVLDRLIAEKLIQQQAQEMGLRVSDAQIRE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F +F +D F + L + G ++ D+ +++ + Sbjct: 120 TIVQMPEFQF-GGQFDNDRFQTILRQNGFQVADFRDYLRIQMTQNQLAAALTNSEFALPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++A + R Y+++++ + + + +++ + E +++Y+ Sbjct: 179 EAERANALQLQTRDAKYVMIDSASFAESVEVTEDDIAEYYNANITAFDTEEQIKLAYVSL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290 V + + ++ + ++ ++ Y+ N Y E R V ++ + +AD A L Sbjct: 239 TVEDVKSRVSVDDEAVRTYYDNNLSGYGKEEERRVSHILIESGDDADAAKAKTQALLDQL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +LAE G F + D + +++FSLA GD+T V+ FG Sbjct: 299 NDGADFAELAENNSDDTFSAENGGDLDFITPGMMDDAFDEAVFSLANVGDYTDVVETEFG 358 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 + I ++ +K + +F++V+ +I + KA E+ E + E ++++++ Sbjct: 359 FHIIKLTELKEAQVQAFEDVEAEIRETLLTDKALEEFFELQNTMAEIAFEVPDTLEDVAN 418 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + L V + P ++ F D+ ++ D + L D + + V Sbjct: 419 AVDLPVQETGLFSRNTVPVN----MSSPALTEVAFSSELIDEGVNSD-IIELDDETVVVV 473 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ E +P R + L+EV + K K E S A +V E ++G++ Sbjct: 474 RVVEHLPQRTQALDEVRDGIVSTVKAQKAQEAAESWATSVV-ESLQQGESVDATLAEKSL 532 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVV--FKVTNSKV 581 + + + R + + ++F+ E V +G +V KV ++ Sbjct: 533 NWESAEAVARSGST---LNRSIVDKLFTLSTEAEKRVDVIATVSGDVAIVELVKVNSAPA 589 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + + L QM + + I L++ VTV +NL Sbjct: 590 LSAEMSESLKPRLAQMQGQRVYQQFIEALRADADVTVSENL 630 >gi|121602029|ref|YP_988842.1| hypothetical protein BARBAKC583_0527 [Bartonella bacilliformis KC583] gi|120614206|gb|ABM44807.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 629 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 149/638 (23%), Positives = 306/638 (47%), Gaps = 16/638 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR + +WV KIF +L + F+ WG+ ++ S +++ G+ + + + Sbjct: 1 MLDSIRNTTNSWVTKIFFAILLLCFVFLWGIPQ--LNIKNESNLLTSGKSVITVDDYRLA 58 Query: 60 WKQE--LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ ++G +++ + + G+ + L D+ + + + Sbjct: 59 LADYSLRLALASQLGRMLSPDEIQQYGIPAFVFYQLQQDILFDEQARKMKISLSQDALAH 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I+ +F + F+ ++F++ L + I++ ++D+YT+ R ++ + G + NL Sbjct: 119 IISSDSIFQ-TNGNFNRNLFLNYLQQLNISQSHFLDYYTQREKRNQLILASLSGAKIPNL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R+ DY+V+N I+ P+ L +WF+ +++ +RAPEY+ +S + Sbjct: 178 FYEAFALHREEKRTADYLVVNLEKEKKISTPNKETLQKWFDTHRNMFRAPEYRTVSLLSI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++ K IS +E Y +N ++ PE R +E+L FP ++ AD+A Q + G F Sbjct: 238 TPNDFVKLENISANEAMTYYNQNASRFTVPEKRIIEELRFPTREAADKAAQKIANGMSFD 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 QL + + K+L DI G ++ +P+ LA IF L K+G + VI+ G +I V I Sbjct: 298 QLVQSEKKTLKDIKKGPLAESELPNY-LASDIFEL-KQGQISAVINDLQGPIIVRVMQII 355 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 PS + F+++++DI + +A ++ Y +E G S+ E++ + + + Sbjct: 356 PSGPIPFEDIEQDIRQTLAQNRAVTDLRSKYTEIENARFEGASLKELADQYNLSLRQI-T 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +D GK ++G + +P KE +L ++ + D ++L +G Y+W Q+ PARD+ Sbjct: 415 IDKEGKTIEGVMLTDLPQKEIVLSAIYQATEGSELD-PLSLQEGGYLWYQVDAITPARDK 473 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 LEEV + +WK K + + KAN ++ + + EGK+ + L TT + R Sbjct: 474 ALEEVEKEAVAEWKNAKIQQLLDEKANNILKQLT-EGKSLDSLAAKLSVKKKTTPALRRQ 532 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 D+ + G +G+ +FSGP + +++K+T S + S + + Sbjct: 533 DSSD-ILGIEGVKALFSGPKGHYGIIKGAVATNRIIYKITESSIPKNVTAQTIPSDIRED 591 Query: 598 MNKDLLDSV-IAYLK---SQYSVTVHDNLIQRYLDGEK 631 M+ L + + + L+ ++ + ++ + + + Sbjct: 592 MDMTLKEDLKLGMLQIANEEHPIEINGSNYNQLFSTSQ 629 >gi|310766848|gb|ADP11798.1| putative protease maturation protein [Erwinia sp. Ejp617] Length = 623 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 120/632 (18%), Positives = 258/632 (40%), Gaps = 32/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + + ++ L L+ L Q+ ++IGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + ++S + G +Y + K L+ ++G G Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R V + +N + A + + + ++++++ + +PE R+SYI Sbjct: 179 ETDSLAALVAQQRLVREVTINVNAMAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S ++Q+ Y+++++ Y P+ + + EA +LKKG F Sbjct: 239 DASAM--QQPVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALKKGGSFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+E+ + +G E PD +L +KG + VI S G+++A + Sbjct: 297 KLAKEKSADPISARNGGDMGWLEPETTPD---ELKNAALKEKGQLSDVITSSVGFIVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + +P + EV +IA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D E+ ++ + + G++ + V DG +V +I+E Sbjct: 412 KAVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + K K ++ ++A++L+ E K GK D K Sbjct: 472 KPEAVKALKDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529 Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585 + R + FS P + + I + V+ + + G P Sbjct: 530 QTLTRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGGMPEA 583 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +K + +TQ + ++++ L+ + + Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIK 615 >gi|127513432|ref|YP_001094629.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica PV-4] gi|126638727|gb|ABO24370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica PV-4] Length = 621 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 123/634 (19%), Positives = 263/634 (41%), Gaps = 37/634 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKGILVLVILSFAFTGVSSYLGS-SSEPSAATVNGEEISKSALEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + S + + + +L+ L++ +DQ D+GL ++ Sbjct: 60 QSERARLEQQLGDMYDTLASNESYLASVKQNVLERLIADKLVDQAAADLGLTVSDQQIKT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D +++ + + G + D ++R +V VG Sbjct: 120 AIMNEPAFQ-TDGKFDNDRYLALIRQLGYQANSFRDMMRGDMTRRQLVVTVVGSEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R + Y V++ + A S+ ++++ + + PE + YI Sbjct: 179 EAEYLAKIQGQTRDIRYHVVDAEPMLATVSVSDEEANTYYQQNQSLFVRPETISLDYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 ++ I++S++E + Y++NK +Y PE R ++ + +A+ L Sbjct: 239 SANQLASAIQVSDEEAKTYYDENKAQYLQPEKRLAAHILVSLGDDEDAAKAKAEAIMTKL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K G+ F LA+ G + ++ + + ++F+L +KG ++ ++ SFG Sbjct: 299 KAGEDFEALAKSDSDDSFSGEQGGKLDWFEQGVMEAPFDQALFAL-EKGQYSDIVKTSFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I + +++ + T F+ VK I Q++ KA + +RL + D ++ Sbjct: 358 YHIIKLLDLQAASTSPFEAVKDKIVAQIQQDKAVNEFYTLQQRLSDVSYEVP--DTLAEA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K V + + +D + + + + D + L D + V+ Sbjct: 416 AKEVGVAVKTSPVFTRDNAPEPLNSADVLKAAFSNTVLLDGM--NSDVIELGDNHVVVVR 473 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + A + +V + + K K E KA +++ G + A Sbjct: 474 VNKHAAAGTMEFADVKATIVERLKQDKANELARDKAQEMMAAIK---------GGEIPAE 524 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVF-KVTNSKVG 582 ++T Q++R + + +S+ F +V + NG + V+ KV ++ Sbjct: 525 MITRTQLSRGE---QGIDTSIVSKAFEMAQPAEQFVVDTAALANGYAVVILDKVNQAESV 581 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 L +++ ++IA LK+Q V Sbjct: 582 DESLVTALKQRLNSQYSENDYRALIAALKAQAEV 615 >gi|90410786|ref|ZP_01218801.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum 3TCK] gi|90328417|gb|EAS44715.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium profundum 3TCK] Length = 623 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 119/632 (18%), Positives = 241/632 (38%), Gaps = 26/632 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + K+ L ++ F+ G+ L + + ++ + F ++ Sbjct: 1 MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL-AGGSQPAAAKINGTEISQNEFEQAY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ + + +LD +++ ++Q ++GL + Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + L R G ++ ++ + RT + G + Sbjct: 120 TITSMPEFQR-DGKFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFALDS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L ++ + R V + L+ A ++ ++E+ + PE +++YI Sbjct: 179 ELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKVFYEQNPQMFTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292 + +++S+++++A YE++K+KY S E R V ++ A+ L Sbjct: 239 SGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDA 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +LA L F + + D + D+ F LA GD + V+ SFGY Sbjct: 299 GADFSELALSSSDDTYSAKDGGKLDWFERG-VMDPAFEDAAFGLANSGDVSGVVKSSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407 I + +K S F +V +I ++R +A+E + +L E + S+D+ + Sbjct: 358 HIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAFEMPDSLDDAAAA 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + + V A P Q LF ++D L+ D + + + V+ Sbjct: 418 VNATVHTTDFISQT----DAQGVLATPAVMQALFSAEVREDGLNSD-VIEIAPEHVVVVR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + +S +EV VK + K + KA+ L+ D+ + G S Sbjct: 473 VDDSRDEMVLAFDEVSAKVKAQLASQKGEQNAQIKADDLIAALRAGS---ADVLEAEGLS 529 Query: 528 LLTTNQINRM--DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 I+R D + V V + N + KV + V Sbjct: 530 FGEEQTISRSGPDRMVSQVAFSLTKPVDDKSVYGMTRDATGNVQIIALDKVIDVDVAKEA 589 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 F + QM + + + + L+ V+ Sbjct: 590 ISGDFAKQVEQMNAQQDVAATLQALRDTAEVS 621 >gi|330446589|ref|ZP_08310241.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490780|dbj|GAA04738.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 630 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 124/637 (19%), Positives = 251/637 (39%), Gaps = 36/637 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + + KI L ++ + F+ G+ L S V +++ F ++ Sbjct: 1 MMERLREGANSIWVKIILSLIILSFVFAGVGSYLAS-GNEQVAAKVNDKEISQREFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + Q++G ++ K +LD +V+ ++Q ++GL +V Sbjct: 60 QNQRNQMQQRLGDYFSTLMGNPEYVQQFRKSVLDRMVNDELIEQRATELGLGVSDAQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F+++ + L R GI+ +++ + K + R + N Sbjct: 120 AIIEMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALQSSDFALNN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D+ ++ + R V + LN ++ ++++ K+ + P ++SYI Sbjct: 179 EVDELRKLESQERVVRTLKLNLADFTNKVTVTDEEAKAYYDENKNQFTRPAQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292 I+I++ E + Y ++K KY + E R V ++ ++ +A+ LK Sbjct: 239 SGKNLVNNIKITDQEAETYYNEHKSKYSTAEKRQVSHILVKGDSDASKAKAEALLAELKG 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A++ L F K + D + ++ FSLAK GD + ++ SFGY Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKG-VMDPAFEEAAFSLAKPGDMSGLVKSSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407 I + I+ F EVK I +++ + +E+ + +L E S+D + Sbjct: 358 HIILLDGIEEPKVKPFAEVKASIIAELQEQQVAEQFYKLQSKLAETAFESPDSLDAAAEA 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K + + K V A ++ L DD ++ D + + + V+ Sbjct: 418 VKAKVVTTGFISL----QDEKGVLADQKVQEALQSPEVHDDGMNSD-VIEIAPEHVVVVR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + +S +V VK K ++ + KA+ ++ +EGK+ D+ G S Sbjct: 473 VDDSREEAVLPFADVEAKVKTLLAQQKGEKQATEKADAIIAAL-REGKS--DVVAKDGLS 529 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVF--KVTNSK 580 + R + F+ P NG ++ KV N K Sbjct: 530 FSGDQTVTRSGPDANV-----ARVAFTLPKPKEGKVSYGMARDNNGNVEIIALDKVVNVK 584 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +F + + M + L + + L+ VT Sbjct: 585 PSADEVNSQFATQVENMFAQQDLAATLETLRESAKVT 621 >gi|238898000|ref|YP_002923680.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465758|gb|ACQ67532.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 624 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 126/635 (19%), Positives = 261/635 (41%), Gaps = 33/635 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E R +++ KI L + + F+ GL + + V V +K+ + + Sbjct: 1 MMEYFRTSTKNLTLKIILFFIVLSFIAGGLGSYFIGRA-TDYVAKVNGEKISRAQLEQAL 59 Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + L KK++D L++ + Q+ +GL+ D V Sbjct: 60 QNERHRLKQQLGEHFLALADNKDYMQQLRKKVIDQLINQILIVQYTHHLGLKIDDEHVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F DN+F + +++ ++ G E+ + + L ++ +F Sbjct: 120 TIRKMSYFQ-TDNQFDNKKYLNLISNMGYTPDEFAELQRQQLINDQLLQIFGNSEFVLPN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V LN ++ + +++K K+ + PE ++S+I+ Sbjct: 179 EIKRISALLLQKRHVRLATLNLNTFQNRQKVTDEEIKDYYDKNKNTFTNPEQVKVSFIIM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D E KI ++ E++ YE++ ++ PE++ + +KEAD LKKG F Sbjct: 239 DAESMENKITVNKSEIKDFYEQHSAEFIQPELKNYSVIQLKTKKEADTTLDKLKKGALFS 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+ + G PD ++ + +L +KG + VI S GY I +++I Sbjct: 299 DLAKNKSIDSISRKKGGQLGWLEPDTTVDEIKQANLTEKGQLSGVIESSTGYFIFRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KPS+ V+ + +++ KA + K++ E + ++ E + + Sbjct: 359 KPSYVKPLSIVRNQLIEKIKQEKAIQAYYVLQKKVSEAMINNH--KSLASAETVSGLKAQ 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT------VALPDGSYMWVQIKE 470 F G++ E+ P ++ +F D K T + L + +++ E Sbjct: 417 HTAFFGRNDVPSELNIKP----VIKAIFDGDWVAKKTQTGSDADMINLDGDRAVVIRVDE 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P R L++V V+K + K +++ + + + KEGK ++ K+ G S Sbjct: 473 HKPKRIEPLKKVRDKVQKQIRAQKAQKQILVEGEKFLAAL-KEGKGTSEM-KSAGLSFGE 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSG-------PVEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ + N + +F+ PV NG+ VT K+ Sbjct: 531 EKALSYNSDHN-----ALVESIFALNLPTKNKPVYGFSFDQNNNGVLIEFLSVTEGKLTS 585 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 EK FIS + N +++++ L+ + + + Sbjct: 586 -SEKQAFISNIQSGYNIANIEALLKNLRKEADIEI 619 >gi|119471187|ref|ZP_01613719.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Alteromonadales bacterium TW-7] gi|119445843|gb|EAW27125.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Alteromonadales bacterium TW-7] Length = 633 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 131/645 (20%), Positives = 260/645 (40%), Gaps = 33/645 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAKI L + + F + G+ L + V V K+ + F ++ Sbjct: 1 MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL-GQTTEQPVAEVNGVKISQTEFNRAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q+ G ++ + + ++D LV Q ++GL V Sbjct: 60 QNERNRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQSQLAAELGLRVSDDTVRK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF++D ++ + + + ++ + ++R+ +V G Sbjct: 120 TILELPYFQLGD-KFNNDRYLQVIRQMNFQPDTFREYLREDMTRSQLVSAVAGTDFALES 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L A + RS+DY+V+N + + S ++ +++ + +PE ++Y+ Sbjct: 179 ELKSAIALQQQTRSIDYLVINKESLADNVEVSEQEVSDYYDLNASQFLSPELISVNYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 ++ ++++A YE+NK +Y PE R V ++ + + D + L Sbjct: 239 KAENIVVG-SVTEEDVKASYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKAKVDALYAEL 297 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 ++G F +LAE + +G + + + D + D+ FSL KGDF+ V+ FG Sbjct: 298 QQGADFAELAESSSDDIVSAEMGGDLDWIERDVMDPAFEDAAFSLEAKGDFSEVVASEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I +++I+P F +VK D+ ++ + + + + + D + Sbjct: 358 YHIIKLTDIQPQQVKPFDDVKADLRAELERAEKIDAFYDKQTEMGAIAFEIS--DRLDDA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 ++ +D+ + + + L +D + L D + V+ Sbjct: 416 AEVAELDVQSTPLLALNALPEPLNTPAVITALTSVDLLEDKV--NSEVIELGDEHIVIVR 473 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I E PA + L +V +K KT+E KA L E + GK+ DI G + Sbjct: 474 INEHQPASTKPLSDVSEQIKTRLVNDKTSELAKDKARSLFAEI-QAGKSLNDIATEQGLT 532 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF--KVTNSKV 581 L +Q+NR + +SQ F +V + NG + +V V ++ V Sbjct: 533 LRQESQLNRQ---SFAVSPAIVSQAFKMAHPADTAVVDVVDLNNGDAAIVALNSVADATV 589 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + +T I LK++ ++ ++++ Sbjct: 590 T-ADIDPQAKQSITMAQANKNYMVFIESLKAKA--ELNLPVVEQA 631 >gi|90579274|ref|ZP_01235084.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum S14] gi|90440107|gb|EAS65288.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum S14] Length = 630 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 121/635 (19%), Positives = 252/635 (39%), Gaps = 32/635 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + + KI L ++ F+ G+ L + V +++ +F ++ Sbjct: 1 MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL-AGGNEQVAAKVNDKEISQRAFEQAY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + Q++G ++ + A +L+ +V+ ++Q ++GL +V Sbjct: 60 QNQRNQMQQRLGDYFSTLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F+++ + L R GI+ +++ + K + R + G N Sbjct: 120 AIVAMPAFQ-VDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALEGSDFALNN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L++ ++ + R V + LN ++ ++EK K + P ++SYI Sbjct: 179 ELNELRKLESQERVVRTLKLNLADFTDKVTVTDEEAKAYYEKNKTQFTRPAQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292 I+I++ E +A Y ++K KY + E V ++ ++ +A+ LK Sbjct: 239 SDKNLVNNIKITDKEAEAYYNEHKSKYSTAEKIQVSHILVKGDSDASKAKAEALLAELKA 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A++ L F K + D + + FSLAK GD + ++ SFGY Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKG-VMDPAFEKAAFSLAKPGDMSGLVKSSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407 I + I+ F +VK I +++ + +E+ + +L E S+D+ + Sbjct: 358 HIILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAFESPDSLDDAAEA 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K I + K V + ++ L DD ++ D + + + V+ Sbjct: 418 VKAKIIKTGFISL----QDEKGVLSDKKVQEALQSPEVHDDGMNSD-VIEIAPEHVVVVR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + ++ P +V VK K ++ + KA+ ++ ++GK+ D+ G S Sbjct: 473 VDDARPESVLPFTDVEAKVKTLLAQQKGEKQATEKADSIIAAL-RDGKS--DVVAKDGLS 529 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTNSKVG 582 I R + ++ P + + + N + KV N Sbjct: 530 FSGDQTITRSGPDANV---ARVAFTLPKPKDGKVSYGMTRDNKGNVEIIALDKVVNVAPS 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +F + + M + L + + L+ VT Sbjct: 587 KDDVDTQFATQVENMFAQQDLSATLQTLRESAKVT 621 >gi|262276274|ref|ZP_06054083.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP 101886] gi|262220082|gb|EEY71398.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP 101886] Length = 630 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 133/631 (21%), Positives = 248/631 (39%), Gaps = 25/631 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + KI L ++ F+ G+ L S S +VG +++ + F ++ Sbjct: 1 MMERLREGVNSIAVKIILGLIIFSFVFAGVGGYLASGS-VQPAATVGNEEISRNQFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E ++ + G + S+ +L+ +V+ + LDQ +++GL ++ Sbjct: 60 QNERALMQAQAGDFFSQLLSDPNYLAQFRFNVLERMVNQSLLDQEAQNLGLRVSDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F G F +D++++ L R G+ ++ D+ + L R +V + Sbjct: 120 TIREMPAFRGATGLFDNDLYLASLRRNGLTPDQFADYVRQDLVREQLVNALISSEFALKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+ + + R+V + L AD + T ++E+ + PE +I+Y+ Sbjct: 180 ELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTAYYEQNPAEFVRPEQFKIAYVEL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292 ++ DE +A YE NK Y + E R V ++ +++A+ L Sbjct: 240 SGEGIADVAGVTEDEAKAYYEANKASYGTAEQRKVSHIMIQGDDNAAKEKAEAVLSELNA 299 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +LA+ + L F K + D + ++ F+L KGD T V+ FG+ Sbjct: 300 GADFAELAKTRSDDTFSAEQGGQLDWFDKG-VMDPAFEEAAFALNNKGDITGVVQSDFGF 358 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRR 407 I + ++KPS F +V+ DI Q++ A EK L E+ + ++++ + Sbjct: 359 HIIKLDDVKPSDAKPFAQVRDDIMAQLKQQHAVEKFYALSNELAEKAFEMPDNLEDAANA 418 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 V + V A P Q L +DD L+ + + + V+ Sbjct: 419 VNAKVERTAFVSLQEL----EGVLANPQVVQALQLPEVRDDGLN-SELIEIAPEHVVVVR 473 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + E P +EV V + K K E + AN LV E S+ K G + Sbjct: 474 VDEVRPETVLPFDEVEAQVTEQLKRQKGEEAAEALANTLVAELSQGN---DAGLKASGYA 530 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQ 585 ++ R+ E + + +G VV V + Sbjct: 531 FGDETELTRVSPEREVVDLAFTMAAPADGKAQYGMTRAVSGDVLVVALDAVKEPATESIS 590 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + L+SVIA LK +V Sbjct: 591 LDSQLAERVIRATANLDLESVIAQLKENTNV 621 >gi|253990887|ref|YP_003042243.1| peptidyl-prolyl cis-trans isomerase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782337|emb|CAQ85501.1| Peptidyl-prolyl isomerase [Photorhabdus asymbiotica] Length = 623 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 119/635 (18%), Positives = 261/635 (41%), Gaps = 29/635 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI L ++ + F++ G+ L S + S V Q + + ++ Sbjct: 1 MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGTDS-YAAEVNGQTISRAQLEQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE M+ +++G + S + ++L+ L++ A +DQ+ +++GL A +V Sbjct: 60 QQERNMLQEQLGDKFSVLASNEQSMKQIRSQVLERLINNALIDQYSQELGLSASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF ++ ++ L R ++ + + L ++ F G Sbjct: 120 AIRNISYFQ-INGKFDNNKYLDFLNRSNLSPDILAEQTRQNLINQQLIMAFSGSEIVLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R+V L + V + ++ L ++ K+++ APE +ISYI Sbjct: 179 EVKLNAELFLQQRAVRLATLELKKVHVRQEVTDKDLQDYYNVNKNSFIAPEEVKISYIRM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ K+ +++ ++ + YE N ++Y PE + + + EA L KG F Sbjct: 239 DAADEMDKVSVTSVDVDSYYEHNLKRYTQPEQKKYSLVQLATEVEAKIVLDELNKGADFG 298 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA E+ + +G ++ +P+ +L +KG + VI G+ I H+ Sbjct: 299 KLAAEKSTDKFSAKNKGEIGWMEEDSLPE---EMKKANLKEKGQISSVIKVPNGFAIFHL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++KP T EV+ +I ++ KA + +++ + A + + ++ E++ Sbjct: 356 DDVKPQITKPLSEVRSEIEKTIKQEKAVDAFYALQQKVSD--AATSDNESLTSAEEVSGT 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + + ++ E+ P + + P + V +G +V ++ Sbjct: 414 KIVTTGWFDRNNVPAEINFGPVIHAIFEGNLVDVQGPTGANSDVISVEGDRAFVLRVDNY 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + E+V V + K K +++ ++ +L+ KEGK + K+ G + Sbjct: 474 KPEIVQPFEQVKKQVTELVKRQKAEKQLQVESERLLAAL-KEGKA-EQVLKDAGIQFGES 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKVG--PVQ 585 I R N I VF+ P + V+ ++ G + Sbjct: 532 QIIQRTSQNN-----ALIDAVFALPQPKEGKAEYGSVKNSLDDIVLIQLDKVTPGVISEE 586 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + + +L+S++ L+ + V Sbjct: 587 QIKGMADGYQNEIGNAMLESLLINLREKAKVKFGH 621 >gi|291616553|ref|YP_003519295.1| PpiD [Pantoea ananatis LMG 20103] gi|291151583|gb|ADD76167.1| PpiD [Pantoea ananatis LMG 20103] Length = 646 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 115/639 (17%), Positives = 260/639 (40%), Gaps = 33/639 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V KI L ++ + F++ G+ + L + V Q++ + ++ Sbjct: 24 MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLIG-GNNDYAAKVNGQEISRAQLDQAF 82 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + + ++ L L+ A LD +I+D+ + +V Sbjct: 83 NSERNRQQQMLGDQFSQLAGNDGYMQQMRQQALSQLIDQALLDSYIKDLHIAISDDQVKQ 142 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF + + + + G +Y + K L+ ++ Sbjct: 143 AIFNQAAFQ-TNGKFDNAKYNAMIGNMGFTADQYAEALRKQLATQQLINAIANTDFMLKN 201 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + L+ + A ++ + Q+++++K+++ APE R+SYI Sbjct: 202 ETSKLVDLVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKNSFMAPEQFRVSYIKL 261 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S+ ++QA Y+++K Y P+ + + +A+ LK G F Sbjct: 262 DAAGMQENA--SDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADANAILAQLKSGADFA 319 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+ + +G PD L +KG + VI S G++IA + Sbjct: 320 ELAKTKSIDPISARKGGDMGWLEPSTTPD---ELKNAGLKEKGQLSGVIKSSVGFLIARL 376 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I P +V+ ++A++++ KA + + +++ E A + ++ E+ + Sbjct: 377 DDIIPEQVKPLADVRSEVADEVKQEKAVDAFYKLQQKVSE--AASNDNESLAGAEQASGM 434 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + +D K++ K+ + + G++ + + DG +V +I E Sbjct: 435 KATETGWFSRDDVPKDLDFDAVKQAIFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEH 494 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P LE+V + K K ++ ++A++L+ + K GK +D+ K G +L + Sbjct: 495 KPEAVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADL-KAGK--QDVLKAAGLTLSAS 551 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585 ++R + F+ P + + + + + V+ V G P Sbjct: 552 KTVDRNTQD------PVAQAAFNLPQPEDNKPSWGVSEDMQGNVVLVAVDKVSTGTMPQA 605 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + ++ + +TQ + ++++ L+ + + Q Sbjct: 606 QINEMVKGVTQNNAQLAFEALLQNLRKEAKIKYGAAAQQ 644 >gi|37527725|ref|NP_931070.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787161|emb|CAE16237.1| Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 623 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 120/636 (18%), Positives = 261/636 (41%), Gaps = 29/636 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI L ++ + F++ G+ L S +GS V Q + + ++ Sbjct: 1 MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGAGS-YAAEVNGQAISRAQLEQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE + +++G + S+ + + LD L++ A +DQ+ ++GL A +V Sbjct: 60 QQERNALQEQLGDKFSVLASDEQSMKQIRNQALDRLINNALIDQYSRELGLSASDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F D KF ++ ++ L R ++ + + + L ++ F G Sbjct: 120 SIRNTSYFQ-TDGKFDNNKYLELLNRFNMSPDIFAEQTRQNLVNQQLIMAFSGSEIALPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R+ L + + A + ++ L ++ K ++ A E +ISYI Sbjct: 179 EVKLNAELLLQQRTARIATLELKKIQAQQEVTDKDLQDYYNLNKSSFIASEEVKISYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ K+ ++ ++ A YE N ++Y PE + + + EA F L KG F Sbjct: 239 DAVDEMNKVSATSADVDAYYEHNLKRYTQPEQKKYSLIQLATESEARTVFDELNKGADFG 298 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA ++ + +G ++ +P+ +L +KG + VI G+ I H+ Sbjct: 299 KLATKKSTDKFSAKNHGEIGWMEEDALPE---ELKQANLKEKGQISSVIKVPNGFAIFHL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++KP EV+ +I ++ KA + +++ + A + + ++ E++ I Sbjct: 356 DDVKPQIIKPLSEVRSEIEKMVKQEKAVDAFYALQQKVSD--AATSDNESLAAAEEVSGI 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + D+ ++ E+ + + P + V +G +V ++ Sbjct: 414 KVVTTDWFDRNSVPAEINFGAVIHAIFEGNLVDGQGPTGTNSDVISVEGDRAFVLRVDNY 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + E+V V + K K +++ ++ +L+ KEGK K+ G + Sbjct: 474 KPETVQPFEKVKDQVTELVKRQKAEKQLQVESEKLLTAL-KEGKG-EQALKDAGIQFGES 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKVG--PVQ 585 I R +N G VF+ P+ + V+ ++ G + Sbjct: 532 QVIQRTSQDNVLVG-----AVFALPLPKEGKAEYGLTKNSLDDVVLIQLDKVTPGVVSEE 586 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + M +L+S++ L+ + + + Sbjct: 587 QIKSMTDGYQSEMGNAMLESLLISLREKAKIKLGHT 622 >gi|119774365|ref|YP_927105.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B] gi|119766865|gb|ABL99435.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B] Length = 615 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 116/633 (18%), Positives = 257/633 (40%), Gaps = 38/633 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ ++ +AK LV++ + F G+S L S S +V +++P S+ ++ Sbjct: 1 MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYLGS-STEPAAATVNGEEIPVSALEQAF 59 Query: 61 KQELGMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ +++ LDQ ++GL ++ Sbjct: 60 QNEKARMEQQLGEMFQTLAADDNYLRSIRQGVLERMIADKLLDQTASEMGLRISDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF ++ +++ L + G + D ++R +V +G Sbjct: 120 AIMEEPAFQTE-GKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIGSEFVLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R + Y+V+ ++ A ++ +++ D + PE + Y+ Sbjct: 179 ESKAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPEQVSLEYLTL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 ++ +++++ +A Y+++ +Y +PE R ++ + +AD + L Sbjct: 239 SAKSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKTKADAIYAKL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + G F +LA+ + LG + ++ + D + +++F L K ++ V+ +G Sbjct: 299 QAGADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGLEKD-QYSAVVKTDYG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + I + +++ SF EVK I Q++ A +K ++L + D ++ Sbjct: 358 FHIIKLLDVQGGAQASFDEVKDRIFAQIKEKDALDKFYSLQQKLADTSYEVP--DSLTEA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465 K +++ +++ E++ L+ F + LS V L D Sbjct: 416 AKATGLEVKSTGLFAREMPPAEIS----NPALIKAAFSEQVLLSGMNSDVVDLGDNQVAV 471 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++KE A +EV + K + +A +L+ ++ K G+ K Sbjct: 472 VRVKEHKQAGTLPFDEVKAGIVARLTQDKANDAAKLQAQELLAKF-KAGEALELTAKAK- 529 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPV 584 + R D E +++ F V + +G + VV KV ++ Sbjct: 530 --------VARFDRE---LDPSIVNKGFQLAVGGADTISMASGYALVVLDKVNPAEGVED 578 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 L+ + VI LK++ ++ Sbjct: 579 ALVQALAQRLSNQYTELAYRGVIDSLKAKAEIS 611 >gi|283479299|emb|CAY75215.1| putative protease maturation protein [Erwinia pyrifoliae DSM 12163] Length = 623 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 119/632 (18%), Positives = 257/632 (40%), Gaps = 32/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + + ++ L L+ L Q+ ++IGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + ++S + G +Y + K L+ ++G G Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R V + +N + A + + + ++++++ + +PE R+SYI Sbjct: 179 ETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S ++Q+ Y+++++ Y P+ + + EA +L KG F Sbjct: 239 DASAMLQP--VSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+E+ + +G E PD +L +KG + VI S G+++A + Sbjct: 297 KLAKEKSADPISARNGGDMGWLEPETTPD---ELKNAALKEKGQLSDVITSSVGFIVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + +P + EV +IA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DDTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQVAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 D+ +D E+ ++ + + G++ + V DG +V +I+E Sbjct: 412 KAVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + K K ++ ++A++L+ E K GK D K Sbjct: 472 KPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529 Query: 532 NQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQ 585 + R + FS P + + I + V+ + + G P Sbjct: 530 QTLMRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGEMPEA 583 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +K + +TQ + ++++ L+ + + Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIK 615 >gi|332532266|ref|ZP_08408147.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas haloplanktis ANT/505] gi|332038364|gb|EGI74809.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas haloplanktis ANT/505] Length = 633 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 128/633 (20%), Positives = 258/633 (40%), Gaps = 31/633 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAKI L + + F + G+ L + V V K+ + F ++ Sbjct: 1 MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTDFNRAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q+ G ++ + + ++D LV Q D+GL V Sbjct: 60 QNERSRLEQQFGEYFTQIAADPNYMAQIRQGVVDRLVQQELQSQLAADLGLRVSDESVRK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KF++D ++ + + + ++ K ++R+ VV G Sbjct: 120 TILELPYFQ-IGEKFNNDRYLQVIRQMNFQPDAFREYLRKDMTRSQVVSAVAGTDFALES 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L A + RS+DY+V+N + A + S+ ++ +++ + +PE +SYI Sbjct: 179 ELKSAIALQQQTRSIDYVVVNKEALAANVEVSDQEVSDYYDLNASQFLSPELISVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + +++D+++A YE+NK +Y PE R V ++ +++A+ L Sbjct: 239 KAADI-NVESVTDDDVKAYYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKEKANALHAQL 297 Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 ++G F +LA+ + +G + + + D + D+ F+L KGD + V+ FG Sbjct: 298 EQGADFAELAQSSSDDIVSGEMGGDLEWIERDVMDPAFEDAAFALENKGDISDVVTSEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I +++I+P ++ +VK D+ ++ + + E + + D + Sbjct: 358 YHIIKLTDIQPQQVKAYDDVKADLRAELEQAEKIDAFYEKQTEMGALAFEIS--DRLDDA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 ++ +++ + + + + L +D + L D + V+ Sbjct: 416 AEVAEVEVKSTPLLALNALPEPLNSPAVVTALTSVDLLEDKV--NSEVIELGDEHAIIVR 473 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I E A + L+EV ++K K++E KA L E + GK+ D+ + Sbjct: 474 INEHKAAATKPLDEVSEEIKARLVNEKSSELAKEKARSLFAE-VQAGKSLNDVANEQSLT 532 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF--KVTNSKV 581 L ++ R + ++Q F +V + NG + +V VT+++V Sbjct: 533 LRQEAKLTRQ---SYTVSPAIVTQAFKMAHPADSAVVDLVNLNNGDAAIVALKSVTDAQV 589 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 + +T I LK+ Sbjct: 590 A-ANIDPQAKQSITMAQANKNYMVFIEALKANA 621 >gi|163793237|ref|ZP_02187213.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium BAL199] gi|159181883|gb|EDP66395.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium BAL199] Length = 626 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 129/637 (20%), Positives = 269/637 (42%), Gaps = 17/637 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59 ML+ IR + KI V+L V F IWG+ D F +SVG + Sbjct: 1 MLQFIRSKVTSIFVKILFVMLIVSFAIWGIGDVFFGNPAGKVAISVGDETRFTTQEVAGE 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ I G + E+A +G+ ++++N+V+ + + L RV + Sbjct: 61 FETARRRI----GVPLTVEQAIQLGMLDQVMNNMVTEGLMIAATRSLDLSVGTDRVAEFV 116 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F + +F + + LA G +E+E+I + +R ++ + Sbjct: 117 RS--RFTDQTGQFDRARYQTTLANNGWSEEEFILRLRQDFARRQLIDALTAADAAPEAAV 174 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 D+ + E R + + + VP P +A L +FE K Y PEY+ I++ Sbjct: 175 DRVFAYRQERRIAEVVTIPAAAVPEPTAPDDAALNSYFEASKSGYEEPEYRSIAWAQVSP 234 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K ++I +++A Y++ ++ PE R V+Q++F + + A + G+ F+ + Sbjct: 235 AAVAKTLDIPEGDVRAAYDERADQLAKPERREVQQILFETEDASKAAHARIAGGEDFVAV 294 Query: 300 AEE-QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A++ G + + LG+ +++ +P AD++F+LA+ + + FG+ + V +I+P Sbjct: 295 AKDTTGADEAALDLGALARDGLP-TGTADAVFALAQN-AVSEPVKSGFGWHLFRVRSIQP 352 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 TV+++E K I +++ +A + V E +LE+ LA G +++E ++ ++ + + + Sbjct: 353 GTTVTYEEAKGRIRDELAHDRALDVVYETANKLEDALAGGATLEEAAKSLELPVLRITGL 412 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G G++ +P L F L DG + +++ E R Sbjct: 413 SKTGALKSGEKAVDLPGGR-FLELAFDTPKDQQSGLGEGL-DGQFFVLRVDEITAPRVPS 470 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L+EV V DWK+ + E +A+ L E + G + D+ G + R Sbjct: 471 LDEVRDRVLADWKSERRMEIAEERADSL-AEKVRGGGSLADLAAADGMPTAELPALTRST 529 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYL 594 + + G ++ + V ++ + + + + Sbjct: 530 RNAPQGFPNTLPATLFGIKDVGGVAVTADDTQAAVVRLVRIEPADATAQANVRKAIATQM 589 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 Q DL++ ++A L++++ V + + + R + + Sbjct: 590 QQAAESDLIELLLADLRNRFKVVENKSSVLRLYETAQ 626 >gi|89073234|ref|ZP_01159764.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp. SKA34] gi|89050944|gb|EAR56408.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp. SKA34] Length = 630 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 118/635 (18%), Positives = 250/635 (39%), Gaps = 32/635 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R+ + + KI L ++ F+ G+ L + V +++ +F ++ Sbjct: 1 MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL-AGGNEQVAAKVNDKEISQRAFEQAY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + Q++G + + A +L+ +V+ ++Q ++GL +V Sbjct: 60 QNQRNQMQQRLGDYFSKLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F+++ + L R G + +++ + K + R + G N Sbjct: 120 AIVAMPAFQ-VDGVFNNEQYNLTLRRAGFSPEQFAESIRKDMLRQQFLSALEGSDFALNN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L++ ++ + R V + LN ++ +++K K + P ++SYI Sbjct: 179 ELNELRKLESQERVVRTLKLNLADFTDKVTVTDKEAKAYYDKNKTQFTRPAQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292 I+I++ E +A Y ++K KY + E V ++ ++ +A+ LK Sbjct: 239 SDKNLVNNIKITDKETEAYYNEHKSKYSTAEKIQVSHILVKGDSDTSKAKAEALLAELKG 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A++ L F K + D + ++ FSLAK GD + ++ SFGY Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKG-VMDPAFEEAAFSLAKPGDMSGLVKSSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407 I + I+ F +VK I +++ + +E+ + +L E S+D+ + Sbjct: 358 HIILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAFESPDSLDDAAEA 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K I + K V + ++ L DD ++ D + + + V+ Sbjct: 418 VKAKIIKTGFISL----QDEKGVLSDKKVQEALQSPEVHDDGMNSD-VIEIAPEHVVVVR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + ++ +V VK K ++ + KA+ ++ ++GK+ D+ G S Sbjct: 473 VDDARSESVLPFTDVEAKVKTLLAQQKGEKQATEKADSIIAAL-RDGKS--DVIAKDGLS 529 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-----NGLSYVVFKVTNSKVG 582 I R + ++ P + + + N + KV N Sbjct: 530 FSGDQTITRSGPDANV---ARVAFTLPKPKDGKVSYGMSRDNKGNVEIIALDKVVNVTTS 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +F + + M + L + + L+ VT Sbjct: 587 KSDVDTQFATQVENMFAQQDLSATLQTLRESAKVT 621 >gi|332305578|ref|YP_004433429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172907|gb|AEE22161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 627 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 116/635 (18%), Positives = 248/635 (39%), Gaps = 26/635 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ ++ A L ++ + F+ G+ + S S + V + + + ++ Sbjct: 1 MLERIREGTQGTWAMAILGLVILSFVFAGVGSYINS-SADTAAAKVNDETISQADLERAY 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + + G ++ A + +LD L+ ++Q D+GL ++ Sbjct: 60 QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLIEQAAVDLGLRVSDAQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF ++ + + L + G E+ D+ ++R + +G Sbjct: 120 AIVAMPEFQF-DGKFDNERYSAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLLE 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 QA + + R Y+ + S + + +++ + + ++Y+ Sbjct: 179 ETTQAYKLQQQTRDARYLTVPADMFKGDVTVSQSDVENYYQANITQFDTQQQVSLAYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 V + IE+S DE + YE+N + + + E R ++ +++A++ + Sbjct: 239 SVDDLLAGIEVSEDEAEQYYEQNIQDFRTQEERRASHILIEFGDDQQKAEQQAEDILAKI 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G+ F +LAE + L FS + D + D+ F+L GD + V+ F Sbjct: 299 NNGEDFAELAETFSSDTFSAENGGDLDWFSMG-MMDPAFEDAAFALQNVGDVSDVVESEF 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEIS 405 G+ I ++++KP T F +VK+D+ +++ +A E+ R+ E ++DE++ Sbjct: 358 GFHIIKLTDVKPEETSPFADVKEDVIAKLKAERAEEEFYAKQLRMAEVAFETPDTLDEVA 417 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 I +D+ +D + V Q D + L D M+ Sbjct: 418 A---IAEVDVKTTVMFSQDSAPQAVNYPNVVSQAFSDELINDQV--NSDVIELEDNHVMF 472 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++ + R + L+EV ++ + + A ++ + + +N D + G Sbjct: 473 IRVADYEAQRTKSLDEVSVEINDILLAEQAQQAAKEWAETVLSDI-QSQQNVSDKLQTKG 531 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGP 583 N + R ++ + ++ G + + NG +V +V P Sbjct: 532 IEWQEQNAVTRNASQVSPAVVTALFKLTDGEESNGQVVELFNGDVALVQLLEVNEGADLP 591 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + + LT M + I L+ Q V + Sbjct: 592 SSDAAALQNRLTTMRAQFTYSEFINALREQADVEI 626 >gi|109899437|ref|YP_662692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas atlantica T6c] gi|109701718|gb|ABG41638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas atlantica T6c] Length = 627 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 120/638 (18%), Positives = 254/638 (39%), Gaps = 32/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ ++ A L ++ + F+ G+ + S S + V + + ++ Sbjct: 1 MLERIREGTQGTWAMAILGLVILSFVFAGVGSYINS-SAETAAAKVNDDTISQADLERAY 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + + G ++ A + +LD L+ L+Q D+GL ++ Sbjct: 60 QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLLEQAAIDMGLRVSDAQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF ++ + + L + G E+ D+ ++R + +G Sbjct: 120 AIVAMPEFQF-DGKFDNERYTAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLAA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 QA + + R Y+ + + S+ + +++ + + ++Y+ Sbjct: 179 ETTQAYKLQQQTRDARYLTIPAESFKDGINVSDDDVENYYQANITQFDTEQKVSLAYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 V + I +S+DE YE+N + + + E R ++ +++A++ + Sbjct: 239 SVDDLLTDIVVSDDEALQYYEQNIQDFRTQEERRASHILIEFGDDEQGARQQAEDVLSKI 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA+E + L FS + D + ++ ++LA GD + V+ F Sbjct: 299 NDGGDFAELAKEYSSDTFSAENGGDLDWFSAG-MMDPAFEEATYALANVGDVSSVVESEF 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEIS 405 GY I +++IKP T F +VK+D+ +++ +A E+ R+ E ++DE++ Sbjct: 358 GYHIIKLTDIKPEETSPFTDVKEDVIAKLKSERAEEEFYAKQLRMAEVAFETPDTLDEVA 417 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 I +D+ +D V P F +D ++ D + L D M+ Sbjct: 418 A---IAEVDVNTTVMFSQDSVPAAVN-YPNVVAQAFSDELINDQVNSD-VIELGDNHVMF 472 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ R + LEEV ++ + + A L+++ E +D+ ++L Sbjct: 473 VRVANYEAQRTKALEEVSPEINDILLAEQAQQAAKEWAETLLVDIKAE----QDVSESLQ 528 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVV--FKVTNSK 580 A + + + ++ +F + + + NG +V KV + Sbjct: 529 AKAVEWQEQEAVARSGSQISPALVTALFKLTEDKESNAQVVELFNGDVGLVQLMKVNDGA 588 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P + + L+ M + + L+ Q V + Sbjct: 589 ELPSTDVAALQNRLSTMRAQFTYGEFVNALREQADVEI 626 >gi|157369342|ref|YP_001477331.1| peptidyl-prolyl cis-trans isomerase D [Serratia proteamaculans 568] gi|157321106|gb|ABV40203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia proteamaculans 568] Length = 627 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 124/637 (19%), Positives = 263/637 (41%), Gaps = 24/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + FL+ G+ S V Q + + ++ Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFLLTGVVSY--QGSAGDYAAKVNGQVIERAQLEQAF 58 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ + + L L+ LDQ+ + +GL +V Sbjct: 59 QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKE 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F + +F + ++ ++R G + + L V+ F G Sbjct: 119 AIRKAPYFQ-TNGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGGSGFILPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R V L+ + + A ++ L ++ + K+++ APE ++SYI Sbjct: 178 EAQDMTALVLQQRDVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPM 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + K+ +++ ++ A Y+++K Y PE + + + EA+ LKKG F Sbjct: 238 DAAAMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFA 297 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+++ + G PD + + +L +KG + V+ S GY++ +++I Sbjct: 298 TLAKDKSTDIISRRTGGELGWLEPDTTADELKQANLTEKGQLSGVVKSSVGYLVIRLNDI 357 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 P EV+ IA Q++ KA + +++ E A + + ++ E+ + Sbjct: 358 APEKVKPLSEVRDAIAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGVKAA 415 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 D+ +D + P + + + G+ + V DG +++ P Sbjct: 416 QTDWFTRDNIPAALNFKPVIQSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGHKPE 475 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K +E + +L++E K+GK + K G S + ++ Sbjct: 476 GIEPFDQVKDRVAELVKRNKAEQEAKLQGEKLLVEL-KQGKG-DEAMKAAGLSFGSVQKM 533 Query: 535 NRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKD 588 R +++ + VF+ P E + + + V+ + K G P +E Sbjct: 534 ARAPEDSQL-----VQSVFALPHPQEGKPVYGMSQDRQDNVVLIALDAVKPGTLPAEEMK 588 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 F+S + + DS++A L+ + +T+ Q+ Sbjct: 589 TFVSKMEEGATGVSFDSLLASLRKEAKITMGAAEQQQ 625 >gi|315127185|ref|YP_004069188.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D) [Pseudoalteromonas sp. SM9913] gi|315015699|gb|ADT69037.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D) [Pseudoalteromonas sp. SM9913] Length = 633 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 131/642 (20%), Positives = 260/642 (40%), Gaps = 33/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAK+ L + + F + G+ L + V V K+ + F ++ Sbjct: 1 MLEKIREGSQGPVAKVILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTEFSRAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q+ G ++ + + ++D LV Q ++GL + Sbjct: 60 QNERSRLEQQFGEYFTQIAADPTYMAQIRQGVIDRLVQQELQSQLATELGLRVSDESIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F++D ++ + + + ++ ++R+ +V G Sbjct: 120 TILELPYFKIGD-QFNNDRYLQVIRQMNFQPDSFREYLRDDMTRSQLVSAVAGTDFALQN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L A + RS+DY+V++ + + A D ++ + ++E + +PE ++YI Sbjct: 179 ELKSAIALQQQTRSIDYLVIDKQAMQADVDVTDQEVADYYELNAGQFLSPELISVNYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 D + +S D+++A YE++K +Y PE R V ++ + +A+ L Sbjct: 239 DADDI-DVASVSEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297 Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F QLAE + +G + + + + + D+ F+L KGD++ V+ FG Sbjct: 298 NAGADFAQLAESSSDDIVSAEMGGDLEWIERDVMEPAFEDAAFALQNKGDYSDVVASEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 Y I +++I+ + VK D+ ++ + + E + +D+ + Sbjct: 358 YHIIKLTDIQSQQVKPYDAVKADLRAELEQAEKVDAFYEKQTEMGALAFEISDRLDDAAE 417 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + PL+ + E P L V +D ++ + L + + V Sbjct: 418 VAGVEVQSTPLLALSAL----PEPLNNPAVITALSSVELLEDKVN-SEVIELGNEHVIVV 472 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ E PA + L EV +K + K ++ KA L + K+GK+ D+ Sbjct: 473 RVNEHQPAATKALSEVSEQIKTRLENEKASDLAKEKARTLFAQI-KDGKSLNDVAAEQSL 531 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF--KVTNSK 580 S+ +Q+ R E+ ++QVF + + NG + +V VT++ Sbjct: 532 SVRQESQLTR---ESFAVSPAIVTQVFKMAHPRDGAVYDVVNLNNGDAAIVALNSVTDAP 588 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 V E + +T + I LK Q + V Sbjct: 589 VSDSIE-PQMKQNITMAQAQKNYTVFIESLKQQAELNVPKAA 629 >gi|270263574|ref|ZP_06191843.1| putative protease maturation protein [Serratia odorifera 4Rx13] gi|270042458|gb|EFA15553.1| putative protease maturation protein [Serratia odorifera 4Rx13] Length = 627 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 120/640 (18%), Positives = 258/640 (40%), Gaps = 30/640 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + FL+ G+ S V Q + + ++ Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFLLTGVVSY--QGSAGDYAAKVNGQVIERAQLEQAF 58 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G ++ + + L L+ LDQ+ + +GL +V Sbjct: 59 QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKD 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F + +F + ++ ++R G + + L V+ F Sbjct: 119 AIRKAPYFQ-TNGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGQSGFVLPS 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R+V L+ + + A ++ L ++ + K+++ APE ++SYI Sbjct: 178 ESQGMAALVLQERNVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + K+ +++ ++ A Y+++K Y PE + + + EA+ LKKG F Sbjct: 238 DAASMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFA 297 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + LG E D +L +KG + V+ S GY++ + Sbjct: 298 TLAKEKSTDIISRRTGGELGWLEPETTAD---ELKQANLTEKGQLSGVVKSSVGYLVVRL 354 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++I P EV+ DIA Q++ KA + +++ E A + + ++ E+ + Sbjct: 355 NDIAPEKVKPLSEVRDDIAKQVKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGV 412 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 ++ +D + P + + + G+ + V DG +++ Sbjct: 413 KAAQTEWFTRDNVPAALNFKPVIQSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGH 472 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P ++V V + K K +E + +L++E K+GK + K G S + Sbjct: 473 KPEGIEPFDQVKDRVAELVKRNKAEQEAKLQGEKLLVEL-KQGKG-DEAMKAAGLSFGSV 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQ 585 ++ R +++ + VF+ P ++ + + N P + Sbjct: 531 QKMARAPEDSQL-----VQSVFALPHPQEGKPVYGMSQDRQDNVVLIALDAVNPGTLPAE 585 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 E F+ + + DS++A L+ + + + Q+ Sbjct: 586 EMKTFVGKMEEGATGVSFDSLLASLRKEAKIKMGAAEQQQ 625 >gi|259909248|ref|YP_002649604.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia pyrifoliae Ep1/96] gi|224964870|emb|CAX56392.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia pyrifoliae Ep1/96] Length = 622 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 118/631 (18%), Positives = 256/631 (40%), Gaps = 32/631 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAFS 59 Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E Q +G + + ++ L L+ L Q+ ++IGL ++ Sbjct: 60 SERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F D KF + ++S + G +Y + K L+ ++G G Sbjct: 120 IFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGNE 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 D + R V + +N + A + + + ++++++ + +PE R+SYI D Sbjct: 179 TDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKMD 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +S ++Q+ Y+++++ Y P+ + + EA +L KG F + Sbjct: 239 ASAMLQP--VSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFAK 296 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ + +G E PD +L +KG + VI S G+++A + Sbjct: 297 LAKEKSADPISARNGGDMGWLEPETTPD---ELKNAALKEKGQLSDVITSSVGFIVARLD 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + +P + EV +IA +++ KA + +++ + A + ++ E++ + Sbjct: 354 DTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQVAGVK 411 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472 D+ +D E+ ++ + + G++ + V DG +V +I+E Sbjct: 412 AVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREHK 471 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P + L++V + K K ++ ++A++L+ E K GK D K Sbjct: 472 PEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQQ 529 Query: 533 QINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQE 586 + R + FS P + + I + V+ + + G P + Sbjct: 530 TLMRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGEMPEAQ 583 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 K + +TQ + ++++ L+ + + Sbjct: 584 KQALVQGITQNNAQLAFAAMLSNLRKEAKIK 614 >gi|56460109|ref|YP_155390.1| periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] gi|56179119|gb|AAV81841.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] Length = 622 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 129/639 (20%), Positives = 266/639 (41%), Gaps = 44/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+++ AK LV++ + F + G+ + S V V +++P S + ++ Sbjct: 1 MLERIREGSQSYTAKAILVLIILTFALAGVGGYITS-DTEDAVAKVNGEEIPRSDYDRAY 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++ G + S+ L +L+ L+ L Q+ ED G+ +V Sbjct: 60 ENERSRLQEQFGDMFSAITSDPDYMRNLRSGVLEQLIEQELLVQYAEDNGMRVSPEQVKA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F +F +DV++ L G + + + + ++R ++ Sbjct: 120 AIRDISQFRTA-GQFDNDVYLMALRNAGYSPEAFAKVMQQDMTRNQLLRGLSATAFVLEP 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 R ++RS ++V +N + + + ++++ +D +R E ++Y+ Sbjct: 179 EAIAFMRLQSQSRSGGFLVASNESFEEQVEIAEQDIENFYQQNQDMFRTQEKLSVAYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292 + E ++EIS++E++ Y++ +++Y + E R V ++ +K+A+EA LK+ Sbjct: 239 SLAAVESEVEISDEEVRQYYDERQQQYSTEEERRVSHILIEFETDNAKKKAEEALAELKQ 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F ++A+ LG + D S+F L GD + V+ SFGY Sbjct: 299 GADFSEVAQTYSDDTFSAEQGGDLGWIEAG-MMDEDFDASVFELENVGDLSDVVETSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407 I +++++ F EVK ++ Q+ KA ++ E ++L E +++ + Sbjct: 358 HIIKLTDLREGSVTPFNEVKDEVRQQLLTEKAEDRYFEKQQKLAEISFEQPDTLEPAAEE 417 Query: 408 EKIVSI--DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 DL D A + V + EQL+ D + D + Sbjct: 418 IGSTVRRSDLFTRDRAPTPLSDDVVLNNLFSEQLIKEKLNSD-------IIETSDDRSLV 470 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ E P R ++L+EV + + + K + +AN+ + + K G+ D Sbjct: 471 VRVTEHQPVRVKELDEVREKIVSELRVEKAQQLALEQANEWM-QAWKAGEEVSD------ 523 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-----CFPIENGLSYVVFKVTNSK 580 ++ + I R + E+ + ++FS + NG + VV +T Sbjct: 524 -EIVWVDSIQRNNGEH---PRTIVRELFSMSPSASDESVFNTVALPNGDAAVVA-LTEVS 578 Query: 581 VGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 G + D+ S + + +L + I LK+ + Sbjct: 579 PGSTDDSQLDELKSQMRNRQAQVMLQAFINNLKADADIK 617 >gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] gi|151280222|gb|ABR88632.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 638 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 114/656 (17%), Positives = 243/656 (37%), Gaps = 44/656 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + IR + + + L+V+F F ++GL S+TV V Q + + + Sbjct: 1 MFDFIRTH-QRLMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQ 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ Q G + + + + +LD L++ L + L + I Sbjct: 60 REQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIM 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 D KF + + S LA +G+ Y + L V + L Sbjct: 120 GIAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R V Y+ + ++ +L +++K + + PE + Y++ Sbjct: 180 RLSELGEQEREVQYLTFKAADYASQVKVTDDMLKAYYDK-SNEFSVPEQVKAEYVVLTAD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290 +I +S+ ++++ YE+N ++Y E R ++ K+A A ++ Sbjct: 239 ALASQINVSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLE 298 Query: 291 ---KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 K + F +LA+E L FSK + D+ F L K+G+ + ++ Sbjct: 299 TLRKSPQDFAKLAKENSNDPGSAERGGDLDFFSKGMMVKP-FEDAAFKL-KQGELSDLVE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 +G+ I V+ IKP+ ++VK DIAN +R ++K E + S+ Sbjct: 357 SDYGFHIIKVTAIKPATLKPLEQVKGDIANDIRKQLVTKKYAETADVFSNTVYEQSDSLK 416 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHT--VALP 459 ++ + K+ + V+ + A P+ + L +F +D +K +T V + Sbjct: 417 SVADKLKL---KIETVNNLSRQPNPAVAATAPFNSPKFLSALFSEDSLKNKRNTEAVEVA 473 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + ++ + PA R +EV V+ + + + + Sbjct: 474 PNTLIAGRVVDYKPASKRPFDEVKAQVRDRVIQTEALVLAKNAGEEKLAALK-------- 525 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577 K+ + T ++R +++ V + + G Y V +VT Sbjct: 526 -AKDDASGFSATQTVSR--AKSQGVNPALFLAVMKADTSKLPSYVGVEVPGQGYGVLRVT 582 Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +K K +T + ++ + + + LK + V + + + E Sbjct: 583 RVVQPSNVDKAKRQAEQQQITAALAQEEMQAYLDVLKEKAKVKIIKPAVAKADGAE 638 >gi|317047179|ref|YP_004114827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b] gi|316948796|gb|ADU68271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b] Length = 622 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 108/626 (17%), Positives = 255/626 (40%), Gaps = 21/626 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A V KI L ++ + F++ G+ + L S V ++ + ++ Sbjct: 1 MMDNLRAAGNHVVLKIILGLIILSFVLTGVGNYLIG-GNSDYAAKVNGHEISRAELDQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + S + ++ L L+ A LDQ+I+D+ + +V Sbjct: 60 NTERNRQQQMLGDQFSQLASNEGYMQQMRQQALSQLIDQALLDQYIKDLHIGISDDQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF + + + G +Y + K L+ ++ Sbjct: 120 AIFNQQAFQ-TNGKFDNVKYNGLITSMGFTADQYAEALRKQLATQQLINAVANTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + ++ + A ++ ++Q+++++++++ APE R+SYI Sbjct: 179 ETSKLVDLVAQQREIRQATIDVNALAAKQTVTDDEISQYYQQHQNSFMAPEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S ++Q+ ++++K Y P+ + + +A+ +LKKG+ F Sbjct: 239 DAASLQENA--SEADIQSWFDQHKADYSQPQRNRYSVIQTKTEADANAVLDALKKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + +G PD +L +KG + VI S G++IA + Sbjct: 297 TLAKSKSIDPISARKGGDMGWLEPNTTPD---ELKNANLTEKGQLSGVIKSSVGFLIARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I+P EV +A++++ KA + + +++ E A + ++ + + Sbjct: 354 DDIQPEQVKPLSEVHDAVADKVKQEKAVDAFYKMQQKVSE--AASNDNESLAGAAEASGL 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + D+ +D +++ K+ + + G++ + + DG +V +I E Sbjct: 412 KVVETDWFSQDSVPQDLDFDAVKQAVFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + K K ++ +AN+L+ + GK +D + G +L + Sbjct: 472 KPEAVKPLDQVKAQIADTLKHDKATQQAKEQANKLLADL-NAGK--QDGLQAAGLTLSAS 528 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 ++R + + Q ++ + V ++ P + D+ + Sbjct: 529 KTVDRNAQDPVAQSAFNLPQPVDNKPSWGVSEDMQGNVVLVALDKVSTGSMPQPQIDQMV 588 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617 +TQ + ++++ L+ + + Sbjct: 589 KGVTQNNAQIAFEALLENLRKEAKIK 614 >gi|77165248|ref|YP_343773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|254434944|ref|ZP_05048452.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] gi|76883562|gb|ABA58243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|207091277|gb|EDZ68548.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] Length = 640 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 106/645 (16%), Positives = 254/645 (39%), Gaps = 37/645 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR ++ A + + ++ +PF +WG+++ + G + SV +++ F +++ Sbjct: 1 MLEAIRNRAQGIFAWVIVGLIAIPFTLWGINNYMLD-GGEALAASVNGEEISTREFRSAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +G E + +++ LV + +GL + I Sbjct: 60 LSYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDTAAKLGLGMSDSSLSQVIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F G+ +F + + L +G+ Y L +V + ++ Sbjct: 120 SNKAFQGESGQFDSQRYEAVLGSQGLTPVAYEARLRSALLSEQLVSTLRLSAFTTQQEVE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R + Y ++ + + + S + Q+++ + + +R PE ++ Y+ Sbjct: 180 AIARLQQQKREIGYSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 I + L+ YE+++++Y PE R ++ Q++A+ F+ Sbjct: 240 SLATDIPLDEQTLRDFYEESEDQYRVPERRRASHILITVPPQGDEATRQQAQEKAEAVFE 299 Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L++G+ F ++A+E G + LG F + + D + +++FSL + G + + Sbjct: 300 RLQQGEDFEEVAKEVSDDPGSAQKGGDLGFFGRG-VMDPAFEEAVFSLEETGALSEPVLS 358 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDE 403 FGY I +++I+ F+ V +++A + R A E+ E + L+ +++ Sbjct: 359 KFGYHIIKLTDIEAGEVKPFEAVSEELAQRYRRQIAEEQFYEQAEILDNLTYENPFTLEV 418 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + G G +AA P F + ++ T+ L Sbjct: 419 AAETLGLSIETSEPFSQNG----GSGIAANPKVVAAAFSEEVLREEMN-SQTIELAPNDV 473 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + V++ + + A + EEV ++++ + + + LV ++G++ + K Sbjct: 474 VVVRLDKHLLADTKPFEEVREEIEEKLTLDQAMAQAQERGETLVAHL-QQGESPETVFKE 532 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--------LSYVVFK 575 G ++ ++ +++ + + + P P+ G +++ Sbjct: 533 GGEAVWNEKKL--YARDDQEIPSEVLKMAYELPHPESPENPVFAGQPLGSGDYAVVGLYR 590 Query: 576 VTNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V N G + EK + + + + + I LKS+ + + Sbjct: 591 VENGNPGKLDEKARRSLAQEMEKAHGEMVYRDFIQELKSKADIKI 635 >gi|294141764|ref|YP_003557742.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12] gi|293328233|dbj|BAJ02964.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12] Length = 621 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 121/637 (18%), Positives = 257/637 (40%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V + + S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEDISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + K +L+ LV+ LDQ ++GL ++ Sbjct: 60 QSERARLEQQMGDMFQALAANDTYLASVKKSVLERLVAEKLLDQSATELGLRVSDEQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F +D +++ L + G + + ++R +V VG Sbjct: 120 AIMIEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R + Y +++ A A ++ +++ + +PE + YI Sbjct: 179 ETSYLAGIQGQTRDIRYHIVDASPFVADAKVTDEQAQSFYDANLSQFMSPETLSLEYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 +V + + +++ E Q Y++NK++Y PE R ++ ++ +A+ + L Sbjct: 239 NVADMANDVSVTDAEAQTYYDENKQQYLKPEKRLAAHILINLGDDESVSKAKAEAIYAKL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + G F +LA+ + + LG + ++ + D + + ++SL+K G ++ V+ SFG Sbjct: 299 QAGDDFSELAKTESEDTFSGELGGKLDWFEQGVMDPAFDEVLYSLSK-GSYSTVVKTSFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 Y I + +++P F +VK +I +++ A + + L + ++ E + Sbjct: 358 YHIIKLLDVQPGVEAPFADVKDNIIAELKDKAAVDTYYGLQQTLADVTYEVPDTLSEAAT 417 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 + P+ A ++L F + L + L M Sbjct: 418 ELGVKVKTTPVFTRT-------NAPAPFDNPEVLKAAFSTNVLLDSMNSDVIELDTNHAM 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++IK A +V + + K + E KA + ++ + Sbjct: 471 VIRIKSHTAAGTVNFTKVKAGIVERLKQEQANEVAREKAQTSMNAFND---------THS 521 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNS 579 A +T ++ R D + ++ F +V + NG + VV KV + Sbjct: 522 SADFVTKTKLGRFD---QGIDTAITNKAFQMAQPADTAVVDTVALANGYAVVVLDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + L+ ++ ++IA LK++ V Sbjct: 579 EGIDDNLLNSLEQRLSAQYSEGDYRALIATLKAKGDV 615 >gi|320540341|ref|ZP_08039993.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia symbiotica str. Tucson] gi|320029661|gb|EFW11688.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia symbiotica str. Tucson] Length = 628 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 117/638 (18%), Positives = 256/638 (40%), Gaps = 25/638 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ KI LV++ + F++ G+ + L G V Q + + + Sbjct: 1 MMDNLRAAANHVALKIILVLIILSFILTGVGNYLIGGFG-DYAAKVNGQVIERAQLEQVF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + +++L L+ L Q+ + +GL ++ Sbjct: 60 QSERQRMQQQLGDQFSVLAGNEGYMQRMRQQVLSQLIDNMLLAQYAKKLGLSVSDEQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++P F D +F + ++ L G ++ + L V F Sbjct: 120 AIRKTPYFQ-TDGQFDNAKYLDLLGSMGYTVDDFAQSMRQQLVNQQVTQAFGESGFMLPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R+V ++ + A + S+ L ++++ ++++ APE ++SYI Sbjct: 179 ESQAMAALLLQQRNVRLATIDLSALQAKQNVSDDELKAYYQQNQNSFIAPEQIKVSYISI 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + K+++S+ ++ A Y+++K Y PE + + + EA+ LKKG F Sbjct: 239 DAVSMQDKVKVSDTDISAYYDRHKSSYGQPERKNYSVIQLKTETEANAVLSELKKGGDFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+++ + G P+ + + L +KG + V++ S GY+I +++I Sbjct: 299 TLAKDKSTDIISRRTGGELGLLEPETTADELKQAHLTEKGQLSSVVNSSIGYLIVRLNDI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +P +V + IA Q+R KA + +++ A + + ++ E++ + Sbjct: 359 EPEKMKPLSDVHETIAKQVRREKAIDAYYALQQKVS--AAATSDNESLASAEEVAGVKAA 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 + +D + P + + + G++ + V +G V++ Sbjct: 417 QTGWFTRDSIPAALNFKPVVQSIFDGSLLGENGAPGSNSDVITVEGDRAFVVRVTAHKAE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V V + K K E+ + QL++E K+GK + K G S + ++ Sbjct: 477 GIEPFDQVKDRVAEWVKHNKALEKAKLQGEQLLVEL-KQGKG-DEAMKAAGLSFGSVQKM 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQEKD 588 R +N + VF+ P ++ + + V P E Sbjct: 535 VRASEDN-----PLVENVFALPHPQEGKPVYGMSQDRQDNVVLIALDVVKPGSLPADEIK 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 F+S + Q S++A L+ ++ ++Y Sbjct: 590 TFVSKMEQSAASGTFYSLLASLRKDA--KINMGAAEQY 625 >gi|290474659|ref|YP_003467539.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Xenorhabdus bovienii SS-2004] gi|289173972|emb|CBJ80759.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Xenorhabdus bovienii SS-2004] Length = 623 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 119/633 (18%), Positives = 256/633 (40%), Gaps = 25/633 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G++ L S G + V Q + + ++ Sbjct: 1 MMDNLRTAANGPVLKIVLALIILTFVLTGVTGYLSSEGG-NYAAKVNGQTISRAQLEQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q+ + ++G + S+ + + + LD L++ DQ+ +GL A +V Sbjct: 60 QQDKIALQDRLGDQFSTLLSDEQKVQQIRRSSLDRLITVILSDQYARKLGLSASDEQVKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI P F D KF ++ +++ L + + + + L ++ + G Sbjct: 120 EIRNLPFFQ-TDGKFDNNKYLTLLTGANRSPDNFAEQVRQDLINRQLMSILTGSEIALPT 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + Q F+ R+V + L + + A ++ L +++ +++ PE ++SYI Sbjct: 179 EIKQETALAFQERTVRFATLELKSIEAQQKVTDKELKNYYDVNSNSFTVPEKVKVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ K + +S+ +++ Y+ N +Y E + + + EA LKKG F Sbjct: 239 DAADELKSVTVSDADIEKYYKNNLPQYMQVEQKKYSMVQLVSDAEAKSVLDELKKGADFS 298 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA E+ LG + +PD L +KG + VI S GY I + Sbjct: 299 KLAAEKSTDKFSAQKGGDLGWMEESSLPD---EIKSAKLIEKGQLSGVIKLSGGYAIFRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +IKP S EV+ +I ++ KA + +++ + A + ++ EK Sbjct: 356 DDIKPQIIKSLVEVRSEIEKIVKQEKAVDAFYALQRKVSD--AAANDNESLTAAEKAAGY 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL-SKDHTVALPDGSY-MWVQIKES 471 D+ +D E+ + + D + V DG V++ + Sbjct: 414 KAVTTDWFDRDHIPAEINFGSVVQTIFSGNLIDDKGASGTNSDVISVDGDRAFIVRVDDI 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + E+ T + + K K +++ ++ +L+ KEGK K G + Sbjct: 474 KPETIQPYEQAKTQIAELVKRQKAEKQLQLESEKLLAAL-KEGKG-EQALKAAGIQFGVS 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587 I + N+ ++ P + + + + V+ ++ G ++ Sbjct: 532 TVIKHLSQTNQ---ATNVAFTLPHPKDGKSEYGLAQDGFGNAVLIQLDKVVPGSVSEEQV 588 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 ++I+ + +L+S++ L+ + + Sbjct: 589 KQYIAAYQYQIGTFMLESLMINLRDDAEIKMGQ 621 >gi|298529972|ref|ZP_07017374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira thiodismutans ASO3-1] gi|298509346|gb|EFI33250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira thiodismutans ASO3-1] Length = 628 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 105/638 (16%), Positives = 256/638 (40%), Gaps = 38/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+I+R+ +++W+ K+ V+ + F+ WG+ F+ T+ + + + F ++ Sbjct: 1 MLDIMRRNAQSWIVKVLFGVIVIVFVFWGVGS--FTEDDRETLAVINGEPISIQEFARAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + ++ ++ E RS+ L +++ + +V+ L Q +GL ++ EI Sbjct: 59 ESTAHSMREQNPG-LSREDMRSMQLREQVFNQMVNSKLLVQKASQLGLSVSREQLQQEIT 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++N+F + L + ++ + L + +P+ + Sbjct: 118 SLPAFFDEENRFDPQRYEQVLRSHRLTPSQFERDFRHNLLMEKMEEYVSLPAKPNEHEVQ 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + +DY + + + ++++ +D + PE RI+++ Sbjct: 178 EFFNYVRSQAKIDYKLFEADEFHDKVSITEEQIKEYYQDNQDRFMEPEKIRIAHLELSPD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 +S++E++A ++ ++ ++ PE ++ +++A ++ Sbjct: 238 ALAGAQRVSSEEVEAYFQSHQSEFEQPEEVKARHILVEVEEDAPELEQEQARERIEQILA 297 Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L+ G+ F +LA E + LG F + + + ++ F L G+ + + Sbjct: 298 ELEMGQSFEELAREHSQCPSAAEGGDLGRFGRGEMVEP-FEEAAFDLT-PGEVSSPVQTR 355 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG+ + V + + +EV+ +I ++ KA++++ + + E + G S+ E + Sbjct: 356 FGWHLIKVEEYVEAASPDLEEVEDEIRRKIGREKAADQIGDYADDVLEIVVAGGSLKEAA 415 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 ++L D+ ++ +G E +P + L R+F + + + L D Y++ Sbjct: 416 DSL---GLELKETDYFSRE-QGPEELELPG--EALDRLFNLMEGEVTESPIML-DNGYLY 468 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + AR +LE+V ++ ++ K+ E A + + + + Sbjct: 469 AEKTGVREARSLELEKVEDEIVEELTRQKSMEMAEKAAGDKLDKI------LDEAVEPEE 522 Query: 526 ASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583 L+T+ +R Q F Y+V +V Sbjct: 523 LDLVTSEPFDRQGFIPGLGMNPQLAEQAFVQDTGSWLPEVKSTDAGYIVARVNEHIEPDM 582 Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 QEKD+++ QM + + +S I L+S+ + + Sbjct: 583 EQFEQEKDQWMQSYAQMQRQQVFNSYITMLRSRADINM 620 >gi|157962498|ref|YP_001502532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana ATCC 700345] gi|157847498|gb|ABV87997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana ATCC 700345] Length = 621 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 118/637 (18%), Positives = 253/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK L+++ + F G+S L S S +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILILVILSFAFTGVSSYLGS-STEVAAATVNGEEISNSALEQAY 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + +++ + + +L+ LV+ LDQ ++GL ++ Sbjct: 60 QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIKA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F +D + + L + G + D ++R +V VG Sbjct: 120 AIMSEPAFQ-TDGAFDNDRYQAILRQLGYQANSFRDMMRIDMTRRQLVATLVGSEFVLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R +DY V++ A ++ + +++ + PE ++YI Sbjct: 179 EAKYVADLQGQTRDIDYKVIDATPFLADISVTDEQIKAYYDTNLGQFIRPEVVSLNYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290 D + K + +++ E QA Y+++K Y E R ++ + + +A+ ++ L Sbjct: 239 DAKDLAKDVTVTDAEAQAYYDEHKANYTQAEKRLAAHILVQSGDDDAAAKAKAEAIYKQL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + G F +LA+ + + G + + + + ++F+L KG+++ V+ +FG Sbjct: 299 QDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFAL-NKGEYSGVVKTNFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 Y I +I+ F +VK+ I Q++ +A +K E + L + ++ E +R Sbjct: 358 YHIIKALDIQAGAQAPFADVKEKILAQLKDKQAVDKFYELQQVLADTSYEVPDTLSEAAR 417 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 + P + +LL F + L + + + Sbjct: 418 DLGVEVKTTPEFTRT-------NPPELFTNPELLNEAFSSNVLLDRMNSDVLEVAPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++ A +L +V + K + E +A + + G I K Sbjct: 471 VIRVNTHKAAGTMELADVRNAIANRLKQEQANEAARKQAQEAMTAVEASGVTADFIVK-- 528 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFK-VTNS 579 +++ + +++ F+ V + NG + VV K V + Sbjct: 529 ----------DKLARFAQDVDGAIVNKAFAMAQPSDKPSVDTVALANGYAVVVLKQVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + D L+ +++ +VIA LK++ V Sbjct: 579 EGVDANLLDSLKQRLSSQYSENDYRAVIASLKAKGEV 615 >gi|295676521|ref|YP_003605045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] gi|295436364|gb|ADG15534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] Length = 644 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 102/646 (15%), Positives = 232/646 (35%), Gaps = 45/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV+L G+ S+ V SV K+ + ++ Sbjct: 1 MLDFFRNHQRLMMFMLILVIL-PGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDDAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + +++LD ++ L + + L A V + Sbjct: 60 RQQIDRGRQMLGAQFDMKAFDTPERRREMLDGMIEQRVLADETQRLHLTASDDAVRRALL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + LA +G+ +Y + L+ + S Sbjct: 120 SDPVISSLKNPDGSIDLERYKQLLAMQGMTPDQYDERMRYNLAMQQLPASIAASAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLSELAQQQREVQGIAFHPHDYEAKIQPTDAQLQAYYDAHRNDFATPATAAIQYVVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DE 285 ++ S+ +L+ Y+ N + + ++ K+A +E Sbjct: 240 SPATLGASVQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASTADKAKAKQKAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 LK F Q+A ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQLKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FG+ I V+ +KP+ T SF EVK IA +++ AS+ ++ + + Sbjct: 359 GIVQTDFGFHIIKVTEVKPAVTKSFDEVKDQIAKEVKTQLASKAFTDNSEGFTSLVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456 S+ + + K+ + + P + L VF D + + Sbjct: 419 KSLQPAADKFKLPIQTATVTPQPDAKLPPDSPLNNP---KFLAAVFANDSVSAHNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + D + + ++ + PA + V V++ + E + E+ K Sbjct: 476 DVGDNTLIAARVTDYKPAAVPAFDAVKDAVRQKVIAEQANEAAHKDGAAKLAEFEKS--- 532 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 A+ ++ + N+ + +S ++ + + + + Y ++ Sbjct: 533 --------KATAGFSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVT 617 +V + + Q+ + ++ + L+ + V Sbjct: 585 RVNRIVPPAATDAQHLAVAQQQIAQVDAQSQAEAYLKALRERSKVQ 630 >gi|77360982|ref|YP_340557.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D) [Pseudoalteromonas haloplanktis TAC125] gi|76875893|emb|CAI87114.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Pseudoalteromonas haloplanktis TAC125] Length = 633 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 122/637 (19%), Positives = 251/637 (39%), Gaps = 31/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK+ L + + F + G+ L + V V K+ + F ++ Sbjct: 1 MLEKIREGSQGPIAKVILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTEFNRAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q+ G ++ + + ++D LV Q ++GL V Sbjct: 60 QNERGRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQTQLAAELGLRVSDESVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F F++D ++ + + + ++ K ++R+ +V G Sbjct: 120 TILELPYFK-IGESFNNDRYLQVIRQMNFQPDSFREYLRKDMTRSQLVSAVAGSDFALKN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+ A + RS+DY+V+N + S + ++E + +PE ++YI Sbjct: 179 ELESAIALQQQTRSIDYLVVNKEAMQDSVVVSEQEIADYYELNSGQFLSPERLSVNYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + ++ D+++A YE++K +Y PE R V ++ + +A+ L Sbjct: 239 KAQDI-TVASVTEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297 Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 +G F +LAE + +G + + + D D+ F+L KGD++ VI FG Sbjct: 298 NQGADFAELAESSSDDIVSGEMGGDLEWIERDVMDPVFEDAAFALENKGDYSDVIASEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I +++++ ++ +VK D+ ++ + + E + + D + Sbjct: 358 YHIIKLTDLQAQQVKAYDDVKADLRAELEKAEKVDAFYEKQTEMAALAFEIS--DRLVDA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + +++ + + + + L +D + L + + V+ Sbjct: 416 AEAAGVEIKSTPLVALNELPEPLNSPAVITALTSVDLLEDKV--NSELIELGNEHVIVVR 473 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + E PA + L +V +K KT+ KA L E + GK+ D+ + Sbjct: 474 VNEHEPAATKALSDVSEQIKASLVNEKTSALAKEKARTLFAE-VQAGKSLNDVAAEQNLT 532 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVF--KVTNSKV 581 + Q+ R + ++Q F V+ + NG + +V VTN++V Sbjct: 533 VRQEAQLTRQ---SYTVSPAIVTQAFKMAHPTDSAIVELVNLNNGDAAIVALKSVTNAEV 589 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + +T I LK+Q + + Sbjct: 590 AD-NIDPQIQQNITMAQANKNYMVFIESLKAQAKINL 625 >gi|209694402|ref|YP_002262330.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida LFI1238] gi|208008353|emb|CAQ78508.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida LFI1238] Length = 618 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 122/634 (19%), Positives = 239/634 (37%), Gaps = 25/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR+ S V KI L ++ F+ G+ L S VG +++ + F + Sbjct: 1 MMDRIREGSTGLVVKIILGLIIFSFVFAGVGSYLVGGS-QPLAAKVGEREITRNDFEQVY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ + A K +LD +V+ A LD +++GL ++ Sbjct: 60 QNERNRMQSQLGEYFSTLLGDPAYVEQFRKSVLDRMVNDALLDNQAQELGLRVSDEQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KD KF ++F L R G + ++ L R +V + Sbjct: 120 AILSMPQFQ-KDGKFDEEIFNVSLRRAGFTSDSFAEYLRGDLVRNQLVSALESTEFTLSN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + I L+ A + + ++++ K + PE ++SYI Sbjct: 179 EVKAQGELEGQQREIRTITLDTATFAKNAKVTEEEVKEYYDANKQQFVRPEQVKVSYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKF 296 + + I+++E+Q Y +N++KY + E R V ++ ++ +A L G+ F Sbjct: 239 SGESLKAQAPITDEEIQTYYNENQDKYSTQEKREVSHILIKGDEADAQAVLARLDAGEDF 298 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+E + + SLG + I D D+ F L GD + ++ +FGY I Sbjct: 299 ATVAKEDSQDIPTAKEGGSLGWIERGVI-DPEFEDAAFQLVNVGDHSGLVKSAFGYHIIQ 357 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIV 411 + I+ T +V DI + A++ L E+ S+D+ + Sbjct: 358 LDAIEAPKTKPLAKVSADIKAFLVDEHAADAFYSMQTELAEKAFESPDSLDDAAEAVNAK 417 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 I A + A Q ++ K+D L+ D + + + V+++ES Sbjct: 418 VITSDFFSQA----DAPALLANSDVLQAIYSAEVKEDGLNSD-VIEIAPEHVVVVRVEES 472 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 LEEV V K ++ A ++ +K + G Sbjct: 473 RDEMVLPLEEVKASVITRLSQAKGEQKALELAKNIITALNK---DDDAYLSEQGLVFTEA 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 I R D + G + +V ++ ++ Sbjct: 530 RMITRADELANDVYRLQKP---TADKPTYAQVMDRQGNNVIVALDDVLELDNSAMAEQVS 586 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + L + + L + + LKS + + L+++ Sbjct: 587 TRLLRTQTQQDLTATLDTLKS--NTEISYPLLEQ 618 >gi|167624682|ref|YP_001674976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella halifaxensis HAW-EB4] gi|167354704|gb|ABZ77317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella halifaxensis HAW-EB4] Length = 621 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 119/636 (18%), Positives = 256/636 (40%), Gaps = 41/636 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEVAAATVNGEEISNSALEQAY 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + +++ + + +L+ LV+ LDQ ++GL ++ Sbjct: 60 QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAETLLDQNAAELGLRVSDEQIKA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F +D + + L + G + D ++R +V VG Sbjct: 120 AIMTEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVATLVGSEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R +DY V++ A ++ + +++ D + PE + YI Sbjct: 179 EAKYLADLQGQTRDIDYKVIDATPFLADISVTDEQIKTYYDSNLDQFIRPEVVSLDYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 D + K +++++ + QA Y+++K Y E R ++ + +A+ ++ L Sbjct: 239 DAKDLAKDVKVTDADAQAYYDEHKANYTQAEKRLAAHILVQAGDDDAAAKAKAEAIYKQL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + G F +LA+ + + G + + + + ++F+L KGD++ V+ +FG Sbjct: 299 QDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFAL-NKGDYSNVVKTNFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I + +I+ F +VK+ I Q++ +A +K E + L + D + Sbjct: 358 YHIIKLLDIQAGAEAPFADVKEKIIAQLQEKQAVDKFYELQQVLADTSYEVP--DTLVDA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465 K + +++ + + + LL F + L + + + Sbjct: 416 AKDLGVEVKTTVEFARTNPPE----LFSNPDLLKEAFSSNVLLDGMNSDVLEVEPNHVVV 471 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++ A L +V + K + E +A +L+ G Sbjct: 472 IRVNTHKAAGTMDLADVRNAIANRLKQEQANEAARKQAQELMTAVEASGVTSD------- 524 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFK-VTNSK 580 + +++ R + + +++ FS V + NG + VV K V ++ Sbjct: 525 --FIVKDKLARFEQDVDG---AIVNKAFSMAQPSDKASVDTVALANGYAVVVLKQVNAAE 579 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + L +++ +VIA LK++ V Sbjct: 580 DVDASLLEALKQRLNSQYSENDYRAVIASLKAKGEV 615 >gi|82703453|ref|YP_413019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] gi|82411518|gb|ABB75627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] Length = 626 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 113/648 (17%), Positives = 259/648 (39%), Gaps = 45/648 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + + K R + +I L + +PF+ WG+ + V +K+ F + Sbjct: 1 MFDFVNKKRR--IVQIILGLATLPFVFWGVESY-RNADAGDHVALAAGEKISRQEFEQAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G + + IL+ L+ L Q +GL ++ I Sbjct: 58 RNQQENMRATLGENFSPALLEKPEVRAAILEGLIQQRLLRQEASRVGLGVADAQLIEMIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 LF +D FS + L +G+N + + + L R +V F S+ + + Sbjct: 118 NIDLFQ-EDGNFSKQRYEEWLRNQGMNARAFEARLRQDLMRQQLVDPFSKNAFISHSVAE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R E R V + + A P N + ++E +K ++ PE R+ Y++ + Sbjct: 177 RILRLGDEKREVRVVQIQPEQFLANVKPGNDAIRAYYEAHKAEFQVPEQARVEYVVLSMD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----------NQKEADEAFQSL 290 +K +++ DE A YE++K ++ PE R ++ + +A+E + Sbjct: 237 ALAEKAQVTADEALAYYEEHKHEFGQPEERRASHILISAPASASDRATARAKAEELLAEV 296 Query: 291 KK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K ++F +LA+ + G + + LG F++ + S D++F + K G+ + ++ Sbjct: 297 RKSPQRFTELAKQHSQDPGSAPTGGDLGFFARNMMTK-SFEDAVFRM-KPGEISDIVETE 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEI 404 G+ I ++ + S +EVKK + ++R KA++ E + S+ + Sbjct: 355 HGFHIILLAEARGGKQASLEEVKKQVEQEVRKQKAAKTFGEMADSFSNMVYEQSDSLKPV 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGS 462 + + + + + +LL +F +D K +T + + + Sbjct: 415 AESLGLTIQESGWIRMNSDEP------PYLNNARLLQAIFSEDAIKDKRNTEAIEVSSNT 468 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + ++ + PA ++E+ + + + ++ + + + + GK Sbjct: 469 LVSARVVDYKPAATPSVDELRDKIAALVAREEASRAAINEGKEQLAQLQQ--------GK 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYV-VFKVT 577 Q++R E + F + + +F + + + G + + V +V Sbjct: 521 TAPIKWTPGQQVSR--RERQGFDNETVQAIFRAETNHLPAYSGLPNAQGGFTLIRVDRVI 578 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 S+ +E+ F L+Q+ ++ S + +K +Y V+V +++ Sbjct: 579 ESRPPSAEERKTFAGQLSQLFAQEEFSSYLDGIKKRYDVSVRSESLEK 626 >gi|157374684|ref|YP_001473284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis HAW-EB3] gi|157317058|gb|ABV36156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis HAW-EB3] Length = 621 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 121/636 (19%), Positives = 262/636 (41%), Gaps = 41/636 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A L + +L+ LV+ LDQ D+GL ++ Sbjct: 60 QNERARLEQQLGEMFAALSADERYLSSVKQSVLERLVAEKLLDQTATDLGLRVSDAQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F +D + + L + G + D ++R +V VG Sbjct: 120 AIMTEPAFQ-TDGVFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + Y ++ A A ++ +++ + +PE + YI Sbjct: 179 EANYLADIQGQTRDIRYHWVDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLEYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290 + + + +S++E + Y++NK++Y E R ++ + +A+ + L Sbjct: 239 NAKDMAAGVTVSDEEAKTYYDENKQQYLKAEKRLAAHILVSLGDDDSTAKAKANAIYAKL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + G++F +LA+ + + G + + + + + + ++SL+K G+++ V+ SFG Sbjct: 299 QAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVMEPAFDEVLYSLSK-GEYSAVVKTSFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I + +++P+ +F++VK I Q++ +A ++ + L + D +S Sbjct: 358 YHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQYFGLQQTLADVTYEVP--DTLSEA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465 + I++ ++ ++L F + L + + M Sbjct: 416 ATELGIEVKSTPVFSRNNAPAPF----DNPEVLKAAFSTNVLLDRMNSDVIEIEANHAMV 471 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V+IK A +V + + + + + E +KA +L+ +S + G Sbjct: 472 VRIKSHTAAGTVDFAKVKSAIVERLQQEQANEVARAKAQELMTSFS---------SDSAG 522 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNSK 580 +T ++ R D E + + F +V + +G + VV KV ++ Sbjct: 523 IDFITKTKLGRFDQE---IDGAIVGKAFQMAQPAASAVVDTVALASGYAVVVLDKVNAAE 579 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 L+ ++ ++IA LK+ V Sbjct: 580 AIDDNMLSSLKQRLSSQYSEGDYRALIATLKANGEV 615 Score = 37.3 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 +KAN + + + G+ F ++ K + Q ++D +V + Sbjct: 287 AKAKANAIYAKL-QAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVMEPAFDEVLYSLSK 345 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSVT 617 ++ Y + K+ + + + S L Q+ K +D ++ VT Sbjct: 346 GEYSAVVKTSFGYHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQYFGLQQTLADVT 405 >gi|323526043|ref|YP_004228196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] gi|323383045|gb|ADX55136.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] Length = 646 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 103/645 (15%), Positives = 234/645 (36%), Gaps = 41/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV + G+ S+ V SV K+ + + N+ Sbjct: 1 MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 60 RQQLDRARQMLGAQFDIKAFDTPERRSEMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + LA +G+ +Y + ++ + G S Sbjct: 120 NDPVISSLKKPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DE 285 ++ S+ +L+ Y+ N Y + ++ K+A +E Sbjct: 240 SPATLAASVQPSDADLKKYYDDNIAHYRTEGQVRASHILIAAPKDASPADKAKAKQKAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F Q+A ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQVKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FGY I V+++KP+ T F EVK IA ++ AS+ +D + + Sbjct: 359 GIVQTDFGYHIVKVTDVKPAVTRPFDEVKDQIARDLKTQLASKAFSDDSEGFTSIVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+ + + K+ + + +F + + + + Sbjct: 419 KSLQPAADKYKLQVQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVN-ARNNTQAIDV 477 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + + + + PA L+ + V++ V++ E + E+ K Sbjct: 478 GGNTLIAAHVTDYKPAAVPPLDAIKDAVRQKVIAVQSDEAAHKDGLAKLAEFQKS----- 532 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576 A+ ++ + N+ + +S ++ + + + + Y +++V Sbjct: 533 ------KATTGFSSPLKVSRNDAQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRV 586 Query: 577 TNSKVGPVQEKDKFISYLTQMM---NKDLLDSVIAYLKSQYSVTV 618 + + + Q+ ++ ++ + L+++ V + Sbjct: 587 NAVVAAAPVDPQRLAAAQQQIAQVESQSETEAYVKALRARSKVKL 631 >gi|212636023|ref|YP_002312548.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella piezotolerans WP3] gi|212557507|gb|ACJ29961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella piezotolerans WP3] Length = 619 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 122/635 (19%), Positives = 258/635 (40%), Gaps = 41/635 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEVAAATVNGEEISNSALEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E G + Q++G + + ++ + + +L+ LV+ LDQ ++GL ++ Sbjct: 60 ENERGRLEQQLGDMFSTLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F D +F +D + + L + G + D ++R +V VG Sbjct: 120 AIMQEPAFQ-TDGRFDNDRYQAILRQLGYQANSFRDMMRVDMTRRQLVATLVGSEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R ++Y+V+++ A A ++ + ++ + PE ++YI Sbjct: 179 EAEYLANIQGQTRDINYLVIDSTPFLAAASVTDEQIQTYYNSNLGQFVRPEIVSLNYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292 D + + ++ + + Y++NK +Y PE R ++ +++A+ +Q L+ Sbjct: 239 DAKQLAADVTVTEADAKTYYDENKVQYLQPEKRLAAHILIGLDEDNAEEKAEAIYQKLQN 298 Query: 293 GKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G+ F LA+ + + G + + + + ++F+L K G ++ V+ +FGY Sbjct: 299 GEDFAALAKAESQDTFSGEQGGQLDWFEAGVMEPEFDAALFALDK-GSYSNVVKTNFGYH 357 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRRE 408 I +I+ F +VK+ I Q++ +A +K E + L + ++ E +R Sbjct: 358 IIKALDIQAGAEAPFADVKEKIIAQLQEQQAVDKFYELQQVLADTSYEVPDTLSEAAREL 417 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWV 466 + P A+ K +L F + L + + + + Sbjct: 418 GVEVKTTPEFTRNS-------APALFSKPAILKEAFSSNVLLDGMNSDVLEVEANHVVVI 470 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ A +L EV + K + E +A + + +G A Sbjct: 471 RVNSHKAAGTMELAEVRDGIAGRLKQEQANENARQQAQDAMTAFKADGST---------A 521 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVF-KVTNSKV 581 L +++ R + + +S+ F+ V + G + VV KV ++ Sbjct: 522 GYLVKDKLARFEQD---IDGAVVSKAFAMAQPTDTATVDTVALATGYAVVVLNKVNAAEG 578 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 D L ++ +VIA LK++ V Sbjct: 579 VDENLIDALKQRLNSQYTENDYRAVIAGLKAKGEV 613 >gi|186475780|ref|YP_001857250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] gi|184192239|gb|ACC70204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] Length = 642 Score = 398 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 103/645 (15%), Positives = 228/645 (35%), Gaps = 41/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV+L G+ S+ V SV K+ F N+W Sbjct: 1 MLDFFRNHQRLMMFMLILVIL-PGLGFVGIQGFRGFFDESANVASVNGHKITRGEFDNAW 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + K +LD L+ L + + L + + Sbjct: 60 RQQMDRARQMLGAQFDAKMFDTPERRKDMLDGLIQQRVLADETQRLHLTVSDDALRRALL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + LA +GI +Y + +S + Sbjct: 120 ADPVIGSLKNPDGSIDVNKYKELLAMQGITPDQYQEQVRYSMSMQQLPAAITQTSFTPKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V + + + P++A + +++ ++D++ P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGLAFRAKEYESKVQPTDAQIQAYYDAHRDDFATPATATIQYLVL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 S+ EL+ Y+ N + +P ++ +++A E Sbjct: 240 SPATLAAAANPSDAELKKYYDDNIAHFRTPGEVRASHILIVAPKDASSADKEKAKQKARE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F QLA ++ G + LG FS I + D++F + KK + + Sbjct: 300 VLAQVKAHPDQFAQLAQQNSQDPGSASKGGDLGYFSPGMIAGGKAFDDAVFKM-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 +I FGY I V++++PS T F+EVK IA ++ A++ +D + + Sbjct: 359 DLIQSDFGYHIVKVTDVRPSVTKPFEEVKDSIAKDLKAQLATKAFGDDSEGFTSTVYEQA 418 Query: 400 -SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+ + + K+ + A + +F D + + + Sbjct: 419 KSLQPAADKYKLQIQTATVTPRANSALPPDSPLNNAKFLAAVFANDSAKD-RNNTQAIDV 477 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + + + + + PA L V V++ + A+ + + + K K+ Sbjct: 478 GNNTLIAAHVTDYKPAAVPALAVVRDAVRQKVVAQRAADLARKEGEAKLADLRKS-KSTD 536 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576 L S N+ + + ++ + + + + Y +++V Sbjct: 537 GFSSALKVS----------RNDAQGVPPAALGAIYKADAQKLPAYVGVDLGADGYAIYRV 586 Query: 577 TNSKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + + + + + + +S + L+++ V + Sbjct: 587 NSIVPPAPTDAQRLTSAQQQIASVNAQAEAESYLDALRARSKVKI 631 >gi|197284031|ref|YP_002149903.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320] gi|194681518|emb|CAR40403.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320] Length = 625 Score = 398 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 134/633 (21%), Positives = 269/633 (42%), Gaps = 29/633 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR + KI L V+ + F++ G+ LFS SG + V K+ + ++ Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q + + +G S + G + ++ L+ L++ A LDQF +++G+ A ++ Sbjct: 60 QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + +V L I+ + + + L + G Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALES 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + ++R+V L+ + S+ L ++++ + AP ++SYI Sbjct: 179 EVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + I IS+DE++A Y+ N ++ P + LV ++ A EA +LK G F+ Sbjct: 239 EAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFV 298 Query: 298 QLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 L +E+ + D SLG + LA++ SL +KG + + S GY I + Sbjct: 299 TLVKEKSIDTFSAKQDGSLGWITIGQEL-PELANA--SLTEKGQISQPVKISNGYAIFRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +IKPS F ++K D+ +MR KA + +++ + A D ++ K ++ Sbjct: 356 DDIKPSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQ--AASNDNDTLATAAKAGNV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKES 471 + D+ ++ + + + D+ + V L + S V+++ Sbjct: 414 TVINTDWFDENNVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMVTLGNDSAYIVRVEGY 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 PA + L++V V K K ++ ++++A +L+ KEGK K S Sbjct: 474 KPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKLLAAL-KEGKG-EAALKEANISFGEV 531 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVG-PVQE 586 + + +F+ P E K + + N G V+ ++ + G P E Sbjct: 532 ESVVHSSATDPIQS-----AIFAMPKPAEGKKEYGMSNVPGSKVVLIQLDSVTDGKPTAE 586 Query: 587 KDKFISYL-TQMMNKDLLDSVIAYLKSQYSVTV 618 + +F++ L M ++ L +++ L+ + + + Sbjct: 587 QLEFMTNLYRAQMGEEALQLMLSDLREKAKIEI 619 >gi|74317691|ref|YP_315431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] gi|74057186|gb|AAZ97626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] Length = 647 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 121/647 (18%), Positives = 247/647 (38%), Gaps = 43/647 (6%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 LE IRK ++ W+AK+ L ++ V F ++G+ + V VG+ + + Sbjct: 16 LEAIRKHAKGWLAKVILGLIAVTFALFGIDSYMSGDRSGGVVAEVGKVGITREELTREIQ 75 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + +G + + K++LD+L+ L E + A V I + Sbjct: 76 AQSDRLRESLGPAFDPSMTETAAFRKQVLDSLIERKALLLEAEKLKFLAPDSYVAAAIGQ 135 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F +D KFS + + L + G + + + V + L+Q Sbjct: 136 IPAFQ-QDGKFSPQRYEAILRQNGRTPASFENELRQAFMLEGVTSPVTLAAFNATTTLEQ 194 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 R + R + ++ L V + A + + + K + PE R Y++ D Sbjct: 195 VARLVAQQREISWVDLPVASVADEVKVTPADVERHYAANKPAFTEPEQIRAEYVVLDAAA 254 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL----------- 290 I +S ++ Y N ++ PE R+ ++ K++D A ++ Sbjct: 255 LVAGISVSEQAVRDYYAANAAQFGQPEQRSASHILIAADKDSDAATRAKAKAKATALMET 314 Query: 291 --KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K+ ++F +LA ++ G + D SLGSF + + D++F++ K + + Sbjct: 315 LRKQPERFGELARSTSQDPGSAEQDGSLGSFGRGMMVKP-FEDAVFAM-KPKEIRGPVES 372 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FGY I + +I+P EV+ I +++R +A + + + E Sbjct: 373 DFGYHIIRLDSIEPGKAAPLAEVRAAIVDELRKQQAQKTFADLADNFSNLVY------EN 426 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGS 462 + + + L + K L +F + S+ +T + + G+ Sbjct: 427 AESLQPAAAAAKLTVQQSGWMNAKAAPPPFDNPALSAALFSPESIKSRQNTEAIEIKPGT 486 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + ++ E AR R L EV ++++ + +TA+ ++ KA + K+ +D GK Sbjct: 487 LVAARVVEHRAARLRPLSEVSAEIERTMRAEQTAQLLAKKAEATI-------KSLQD-GK 538 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYV--VFKVT 577 G + R G+ VF E + +G + V +V Sbjct: 539 ESGLDWTAFQVVGRQ--PGASLDAAGVKAVFRANAEKTPAYTGFARPDGSYRIVRVTRVV 596 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + S + Q + + ++IA + + + V + N I+ Sbjct: 597 EPASLDPMLMESIGSGVMQAQQRADMKALIALVTAGHKVKIQPNAIE 643 >gi|303249065|ref|ZP_07335308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio fructosovorans JJ] gi|302489530|gb|EFL49472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio fructosovorans JJ] Length = 654 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 115/651 (17%), Positives = 256/651 (39%), Gaps = 45/651 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W KI ++ + F+ WG+ F ++ + ++ Q V + ++ Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FRGDKATVLATIDGQPVLIKDYEKAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + + + + + G ++ N+V+ L++ + +G+ + EIA Sbjct: 59 R-EAQRLVKNKNPDITDKELQDGGFRWQVFSNMVTSRLLEEQAKKLGVSVSADELRAEIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F K KF + + L + E+ + + L + G S Sbjct: 118 KIPAFQDKSKKFDAKRYENLLRANDVTPGEFEADFRQNLLLEKLAGFVSLPASVSEAEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E + YI+ P++ + ++E KD + P +I Y+ F Sbjct: 178 SIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDYVEFTPK 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 + ++++ +++A Y+ N++KY PE V + +A + Sbjct: 238 ALAQPDKVTDADIEAYYKANQKKYARPEQVKVRHFLIMLPADAPKSAVDAATAKLKDIAA 297 Query: 289 SLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 LK G F L + G+ + + GS KE+ P + FSL K G+ + Sbjct: 298 KLKAGAAFASLLPKNPNNADGLIGEDWAWLPKGSLPKEFGP---FEEKAFSL-KNGEISE 353 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + + G + + + EVK DI ++ KAS+K+ + +++ +A G Sbjct: 354 PVRTALGLHLIQAGERQAAGERPLSEVKDDIREELAERKASDKLTQSLDNMQDKIASGVD 413 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + + + EK+ V A K + +Q L +F D ++ D Sbjct: 414 LGKAAADEKL------PVKSADFFSKDNPPTDLGLSDQALGVLFSMKKGAVSDTPLSTQD 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G ++ ++ + PA + L++V +K+ + + +KA++ + + + + Sbjct: 468 G-FLLARVSDIQPAGFQSLDDVKEAIKQRLIADEAQKRARAKADE-TAKAMETPAGEQKV 525 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFS--GPVEMVKCFPIENGLSYVVFKVT 577 + T+ +R + Q F GP + + G YV+ + Sbjct: 526 LAEYKDKIQTSQPFSRQGFIPGLGMAPVLVQTAFEAKGPGWFKAAYGVTGG--YVLASLD 583 Query: 578 NSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLI 623 +EKD++++ L+Q +L + ++ ++ V + + +++ Sbjct: 584 KKIPADPALWEKEKDRWLATLSQSKQSELFKAYLSTVQQGAKVEIVNQDIL 634 >gi|322834042|ref|YP_004214069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602] gi|321169243|gb|ADW74942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602] Length = 626 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 252/637 (39%), Gaps = 23/637 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + F++ G+ + L SG V Q++ + + Sbjct: 1 MMDNLRAAANHVVLKIILALIILSFILTGVGNYLIGGSG-DYAAKVNGQEIGRAQLEQAV 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + Q++G ++ L ++ L NL+ LDQ+ + +G+ ++ Sbjct: 60 QNQRSRLQQQLGDQFSALAGSDGYMQQLRQESLSNLIDVTLLDQYSKKLGITVSDQQIKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D +F + ++ + G + + L + + + Sbjct: 120 AIFATPQFQ-TDGRFDNAKYLQSIQGMGYTADNFAQLMKQQLISQQLEQAYGQSDFVLPV 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++R V L+ + A ++A L ++++ K+++ +PE ++SYI Sbjct: 179 ESKSLGGLILQSRDVQTATLDTDALAAKQQVTDAELQAFYDQNKNSFLSPEQVKVSYIEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + K +++ ++ A Y+++K ++ PE R +V +Q +AD LKKG F Sbjct: 239 DAAAMQGKTNVTDADISAYYDQHKSEFGQPERRRYSVIVLKSQADADAVAAELKKGTDFA 298 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +LA+ + G P+ +L + +L KG + VI G+ I + ++ Sbjct: 299 ELAKTKSTDALSARQGGDLGWMEPETTLPEFKNANLTTKGQVSGVIKSDSGFFILRLDDV 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 P +V+ IA++++ K+ + +++ E A + ++ E + Sbjct: 359 TPEQVKPLADVRNTIADKLKQEKSLDAYYALQQKVSE--AATNDNESLASAEDVAGTKAV 416 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 D+ ++ + P + + + G+D + + DG V++ Sbjct: 417 HTDWFTQNQIPAGINFKPVVQAIFDGGLIGQDGSPGSNSDIITVDGDRAFVVRVDAHKAE 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 + +V V K K ++ + +L+ KEGK D K G + ++ Sbjct: 477 GVKPFADVKDQVTTLVKRQKAQDQARMEGEKLLTAL-KEGKG-DDAMKAAGLTFGAVQKV 534 Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 R + F V++ P V ++ + V+ K+ G P + Sbjct: 535 QRSQQPSAFE-----ENVYALPHPQKDQPVYGLTQDDKGNSVLVKLNAVTPGTIPAADTA 589 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F + Q + DS++ L+ + + + Sbjct: 590 RFNQEMQQTSSNVAFDSLLTNLRQEAKIKYGSAAQNQ 626 >gi|85058653|ref|YP_454355.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Sodalis glossinidius str. 'morsitans'] gi|84779173|dbj|BAE73950.1| peptidyl-prolyl cis-trans isomerase D [Sodalis glossinidius str. 'morsitans'] Length = 617 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 112/630 (17%), Positives = 247/630 (39%), Gaps = 24/630 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ F++ G+ + L G V Q++ S + Sbjct: 1 MMDNLRAAANHVVLKIILGLIAFSFVLTGVGNYLIGGDG-DYAAKVNGQQISRSQLEQAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + +G + A + +++L L+ LDQ+ + +GL ++ I Sbjct: 60 QNERNRQQEAMGEQFSQLAANEGYMRQQVLSQLIDETLLDQYADKLGLAISDDQIKQAIF 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F +D KF + F S + G++ +Y K L ++ G D Sbjct: 120 AILAFRTED-KFDNAKFRSLIGNMGLSPDQYATLMRKQLLTQQLIQGIGGTGFLLPAETD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R + + A S+ + + YK+ Y +PE ++SYI D Sbjct: 179 RLLEVAVQTREARLAMFAIAALAAKQTASDDEIQASYNAYKNQYLSPEAFKVSYIPMDAE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K + E+QA Y+++ +++ P + + ++ +A++ + L++G F LA Sbjct: 239 TMQTKTTVDEQEIQAWYDQHHDQFTVPGRKRYSIIQSKSENDANDWLKQLQQGADFASLA 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + G ++ D D + +L++KG + VI S G++I + +++P Sbjct: 299 KAHSTDVVSAKNGG-DIGWMSDSDTLDELKQANLSQKGQLSGVIKSSVGFLIIRLDDMQP 357 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + V ++A +++ KA + +++ + A + ++ E I Sbjct: 358 AQVSPLSAVHDEVAAKVKQEKAIDAYYALQQKVSD--AASNDNETLASAETAAGIKAQQT 415 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D+ D +V A + + +F S + + ++I E P R + Sbjct: 416 DWFSHD----DVPAALNYDAVKQVLFQGSLLGSNSDVITVDGNRSFVIRIAEHRPERVQP 471 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 LE+V V+++ K K E+ A + ++ ++ + + G S Q + + Sbjct: 472 LEDVRARVEQEVKRQKALEQARVDAEKALVALKQDKGT--EALQAAGLSFSAPQQFDSAN 529 Query: 539 NENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592 G VF+ P + + + + Q++ +F+ Sbjct: 530 Q-----GDPLAQTVFTLPQPPHGKSSYGMASNAQGDIVLIALDSVTPRTLEEQQRKQFVD 584 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 L Q M D+++ L+++ + + Sbjct: 585 QLNQGMTGVAFDALLENLRAEAKIKMGAAA 614 >gi|300715595|ref|YP_003740398.1| peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661] gi|299061431|emb|CAX58543.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661] Length = 623 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 115/634 (18%), Positives = 251/634 (39%), Gaps = 20/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS V KI L ++ + F++ G+ + L +G V Q++ + N++ Sbjct: 1 MMDNLRAASNHVVLKIILALIILSFVLTGVGNYLIGGNG-DYAAKVNGQEISRAQLENAF 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q++G + A + ++ L LV + L + +D+GL ++ Sbjct: 60 SNERSRQQQQLGEQFSQLAGNPAYIQQIRQQALSQLVDESLLTGYAKDLGLAISDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF + ++ + + G +Y + K L+ ++ Sbjct: 120 AIFNQSAFQ-TNGKFDNTKYLGLINQMGFTADQYAEALRKQLTTQQLIAAVTNTDFMLTG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R V +N + A S + ++E+ K+N+ +PE R+SYI Sbjct: 179 ETDALAALVSQERLVREATINVAALAAKQTVSAEEIKNYYEQNKNNFMSPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++ S ++Q+ Y++++ Y P+ + + EA A ++KKG F Sbjct: 239 DAASMQE--TASEADIQSWYDQHQADYTQPQRSRYSIIQTKTEAEAQSALDAMKKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + +G + PD L +KG + VI S G+++A + Sbjct: 297 ALAKEKSADPISARNGGDMGWLEPDTTPD---ELKSAGLKEKGQLSGVIKSSVGFIVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++++P V DIA +++ KA + + +++ + A + ++ E+ + Sbjct: 354 TDVQPQQIKPLAAVHDDIAAKVKQEKAIDAYYKLQQKVSD--AATNDNESLAGAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + D E+ ++ + + G++ + + DG +V ++ E Sbjct: 412 KAVETGWFSHDNPPAELNFKQVEQAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRVSEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + KT K + ++A++L+ + K GK + K S + Sbjct: 472 KPEAVKPLDQVTAQITDTLKTQKAQAQAKAQADKLLADL-KAGKG-DEAMKAANLSFGSQ 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 + R + +S E + V S P +K + Sbjct: 530 KTLTRNGQDAVTQAAFTMSLPAKDKPSYATSEDGEGNVLLVALDQVRSGSMPDAQKKAMV 589 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +TQ + +++++ L+ + + + Sbjct: 590 QGITQNNAQITFEAMLSNLRKEAKIKYGAAAQAQ 623 >gi|17546434|ref|NP_519836.1| peptidyl-prolyl cis-trans isomerase transmembrane protein [Ralstonia solanacearum GMI1000] gi|17428732|emb|CAD15417.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein [Ralstonia solanacearum GMI1000] Length = 648 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 108/649 (16%), Positives = 236/649 (36%), Gaps = 34/649 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++ A + + +++ ++ + E + Y++F Sbjct: 180 LVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 E K+I ++ ++L+ Y++N ++ + E R ++ +K A+E Sbjct: 240 SGEEMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKK-GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F +LA++ LG +K +++F+L + GD + Sbjct: 300 VLAEVRKSPGSFAELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISD 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I + ++K S VK ++ ++R A++K E + Sbjct: 359 VVESDFGFHIIKLEDVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V G E++L +F D + +T V Sbjct: 419 SLKPVADKLKLQIQTADHVTRVPNPALGNSPVN---NEKVLKALFADDVTKNHRNTQAVQ 475 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + E PA +KL +V VK ++A ++ KA + L K+ + Sbjct: 476 VGPTTLVAARAVEYRPATVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAALKQSNSA 534 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 G S + PV + + Y + KV Sbjct: 535 EGFGTAQTLSRQQAQG-----TPPAALVAILRADAAKLPVTIGVDLGAQGYALYRINKVL 589 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + LTQ + ++ LK++ V ++ +++ Sbjct: 590 PPANVDPARRAADAQQLTQAAGQADFNAYYEALKARSKVKINGSVVDAA 638 >gi|227358098|ref|ZP_03842440.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC 29906] gi|227161833|gb|EEI46865.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC 29906] Length = 625 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 132/633 (20%), Positives = 269/633 (42%), Gaps = 29/633 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR + KI L V+ + F++ G+ LFS SG + V K+ + ++ Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q + + +G S + G + ++ L+ L++ A LDQF +++G+ A ++ Sbjct: 60 QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + +V L I+ + + + L + G Sbjct: 120 AIFALPYFQ-TDGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALES 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + ++R+V L+ + S+ L ++++ + AP ++SYI Sbjct: 179 EVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + I IS+DE++A Y+ N ++ P + LV ++ A EA +LK G F+ Sbjct: 239 EAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFV 298 Query: 298 QLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 L +E+ + + SLG + LA++ SL +KG + + S GY I + Sbjct: 299 TLVKEKSIDTFSAKQNGSLGWITIGQEL-PELANA--SLTEKGQISQPVKISNGYAIFRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++KPS F ++K D+ +MR KA + +++ + A D ++ K ++ Sbjct: 356 DDMKPSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQ--AASNDNDTLATAAKAGNV 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKES 471 + D+ ++ + + + D+ + V L + S V+++ Sbjct: 414 TVINTDWFDENNVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMVTLGNDSAYIVRVEGY 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 PA + L++V V K K ++ ++++A +L+ KEGK K S Sbjct: 474 KPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKLLAAL-KEGKG-EAALKEANISFGEV 531 Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVG-PVQE 586 + + +F+ P E K + + N G V+ ++ + G P E Sbjct: 532 ESVVHSSATDPIQS-----AIFAMPKPAEGKKEYGMSNVPGSKVVLIQLDSVTDGKPTAE 586 Query: 587 KDKFISYL-TQMMNKDLLDSVIAYLKSQYSVTV 618 + +F++ L M ++ L +++ L+ + + + Sbjct: 587 QLEFMTNLYRAQMGEEALQLMLSDLREKAKIEI 619 >gi|260428591|ref|ZP_05782570.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp. SE45] gi|260423083|gb|EEX16334.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp. SE45] Length = 615 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 124/629 (19%), Positives = 255/629 (40%), Gaps = 24/629 (3%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 + + I VL F+ +G + G+ ++ SVG + + + + + E+ Sbjct: 1 MARGKSGITKYIVWGVLIASFVGFGAFGTVNFTGGAGSIGSVGDTTIETTDYARALQNEM 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + + G V E+AR GL ++L +V+ A LD+ +G+ RV ++ Sbjct: 61 RAVEAQTGQPVTLEQARQFGLTDQVLAQVVTNAALDEETRQLGILVGDERVAEDLRNVQA 120 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 FHG D F + L G+ E E+ D + +R+ + + G + ++ Sbjct: 121 FHGPDGNFDRSAYSYALQNAGLKEAEFEDSLRQESARSILQAAVLSGTTLPDTYVNTLLG 180 Query: 185 FYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + E R + L+ + + P++ L W+++ D + PE K I+Y Sbjct: 181 WVGETRDFTWAKLDRDALTTGLPVPTDEELQAWYDENIDQFTLPETKVITYAWLTPDMIV 240 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302 +E+ L+ YE+ ++ PE R VE+LVF ++ EA A + G+ F + E Sbjct: 241 DTVEVDEQALRDAYEERHAEFNMPERRLVERLVFSSEDEAQSAADRIASGETDFEGVVAE 300 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +G ++ D +G ++ + + D++F A+ G + G + V+ + Sbjct: 301 RGLAIIDTDMGDVTRASLGEA--GDAVFG-AEVGAVVGPEPTNLGPALFRVNGVLAEQVT 357 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 F+E D+ + + + +A ++ + L++ LA G +++E+S+ ++L ++++ Sbjct: 358 PFEEAVPDLRDALVLDRARRVIEGMSQDLDDELAGGATLEELSQD---TDMELGQIEWSE 414 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 G +A + V D P D L DG +++ E E+V Sbjct: 415 TSDTG--IAGYEAFREAAQAVQDADYPAIDD----LGDGGVFALRLDEQRDPAPAPFEDV 468 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 +V + W+ + E + ++A +L S G +F D G S + + R + + Sbjct: 469 RDEVAQLWEQDQATEALVAQAEELATAIS-GGGSFED----SGLSPTQESGLTR-NQPIE 522 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYV----VFKVTNSKVGPVQEKDKFISYLTQMM 598 + VF+ + P V V V Q D+ + Sbjct: 523 GLPAAILEAVFTMEPGEARALPGNGAALVVRLDGVTPVDMDAPQVTQVGDQLRDQAANSV 582 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D+ ++ ++S+ V+V + + L Sbjct: 583 ANDIFRALNTDIQSRAGVSVDQSAVNAVL 611 >gi|284006425|emb|CBA71661.1| peptidyl-prolyl cis-trans isomerase D [Arsenophonus nasoniae] Length = 623 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 122/635 (19%), Positives = 259/635 (40%), Gaps = 29/635 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ + F++ G+ L S S+ V V + ++ Sbjct: 1 MMDNLRTAANSLVLKIVFVIIILSFVLTGVGSYLIGGS-SNHVAKVNGTAISQVQLQQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE ++ +++G S L ++ L+ L+ L+Q+ +GL A +V Sbjct: 60 QQEKQVLQERLGDQFAEIASSEQGMQMLRRQALERLIGVTLLNQYSNQLGLTASDNQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I P+F D F + + + L++ +N + + L + M++ Sbjct: 120 DIYNMPIFQ-TDGHFDSEKYRTILSQHNVNADDLAQEIRQNLINRQLSKMYITDEFVLPE 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V L+ + + ++ L ++ +++++ +PE ++SYI Sbjct: 179 EVKSYAQLLLQQREVKTATLSLANYQSKQTVTDKELQDYYNAHQNSFISPEQVQVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + + + + ++EL+ YE+N + P + + P +KEAD +SL G F Sbjct: 239 DAASQRENVAVKDEELKNYYEQNIANFTQPAQKHYSMIQLPTEKEADSVVKSLAGGADFK 298 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 QL E+ + +LG P + +L KKG + VI + Y+I + Sbjct: 299 QLVAEKSTDKFSAANHGALGWMEATSTPSEII---AANLTKKGQISAVIKSASNYIIFRL 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +IKP FQ VK +IAN ++ KA + A + ++ EK I Sbjct: 356 DDIKPEVVKPFQSVKTEIANTLKNEKAINAFYSLQQTAS--RAAMDDNESLTAAEKATGI 413 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + ++ +E+ + + + K+ P + V DG +++++ Sbjct: 414 KAVTTGWFSRNNLPEEIRFDKVADTIFNGNLVDKNGPTGINSDVINVDGDRAFVIRVEKY 473 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + +EV V + K K +E+ ++ N+L+ K+G + K LG + Sbjct: 474 KPQVTQPFDEVKKTVAELVKLNKATKEMEAEGNKLLTAL-KQGAGEAALAK-LGINFGDA 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKVGPV--Q 585 I R + + + +F P+ + + V+ ++ G + Sbjct: 532 KIIERFEQNDVL-----VEPIFQMPIPKENTPTYFSTKDAKNNLVIIQLIKVTQGQPTDE 586 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 E F ++ +++S++ L+ V + Sbjct: 587 ELKVFSQRYKMILGNVMMESLMLNLRDSAKVDLGR 621 >gi|296157831|ref|ZP_06840665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. Ch1-1] gi|295892077|gb|EFG71861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. Ch1-1] Length = 645 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 108/647 (16%), Positives = 238/647 (36%), Gaps = 47/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV + G+ S+ V SV K+ + + ++ Sbjct: 1 MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 60 RQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + LA +G+ +Y + ++ + G S Sbjct: 120 NDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 ++ S+ +L+ Y+ N Y ++ ++A+E Sbjct: 240 SPATLATSVQPSDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F QLA ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQIKAHPDQFAQLAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D + + Sbjct: 359 GIVQTDFGYHIVKVTDVKPAITKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVA 457 S+ + + K+ + K P L VF D ++++T A Sbjct: 419 KSLQPAADKYKLQLQTATVTPQ----PDPKLAPDSPLNNAKFLAAVFANDAVTARNNTQA 474 Query: 458 LPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + G + ++ + A L+ V V++ V++ E + ++ K Sbjct: 475 IDVGGNTLIAARVTDYKAAAVPSLDAVKDAVRQKVIAVQSNEAAHKDGAAKLADFEKS-- 532 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573 ++ ++ + N+ + +S ++ + + + + Y + Sbjct: 533 ---------KSTAGFSSPLKVSRNDAQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAI 583 Query: 574 FKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++V G + + + Q+ + ++ + L+++ V Sbjct: 584 YRVNAVVAGTTVDPQRLAAAQQQIAQVDAQSEAEAYLEALRARSKVK 630 >gi|238783605|ref|ZP_04627626.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC 43970] gi|238715483|gb|EEQ07474.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC 43970] Length = 607 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 126/619 (20%), Positives = 258/619 (41%), Gaps = 29/619 (4%) Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS---E 78 + F++ G+ L S V Q++ + + + E G + Q++G ++ Sbjct: 1 MLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAVQSERGRLQQQLGEQFSALAAN 59 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 L +++L LV+ LDQ+ + +GL A +V I ++P F DNKF ++ ++ Sbjct: 60 EGYMQQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDAIRQAPYFQ-TDNKFDNNKYL 118 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + R G ++ + L ++ F + + R V ++ Sbjct: 119 ELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEAQAMSELILQQREVRLATID 178 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 + + A ++ L ++++ K+++ APE +IS+I D + KI ++ +++ A Y+ Sbjct: 179 LKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKISFIAMDAAAMQDKITVTEEDIAAYYD 238 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGS 314 ++K Y PE R + F N+ EA A + LKKG F +A+E+ + + LG Sbjct: 239 QHKSSYTQPERRNYSVIQFKNEAEAKAALEELKKGADFAAMAKEKSTDIISRKNGGDLGW 298 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 E D L++KG + V+ S GY+I +++IKP EV +A Q Sbjct: 299 LEPETTAD---ELKQAKLSEKGQLSDVVKSSVGYLIVRLNDIKPEQVKPLSEVHDALAKQ 355 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 ++ KA + +++ E A + + ++ E+ D+ +D EV P Sbjct: 356 VKQEKAVDAYYALQQKVSE--AATSDNESLASAEEAAGAKAKHTDWFTRDSIPAEVNFKP 413 Query: 435 YKEQLL-FRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKT 492 + + + G++ + V DG ++I P E+V V + K Sbjct: 414 VAQAIFDGGLIGENGAPGSNSDVITVDGDRAFVIRIDGHKPEGIEPFEQVRDQVAELVKR 473 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 K + +++ K+GK + K G S ++R ++++ + + Sbjct: 474 QKAEQLARVDGEKILTAL-KQGKG-EEAMKAAGISFGEKKTLSRAPDDDQL-----VQTI 526 Query: 553 FSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSV 606 F+ P V + + V+ ++ + G P E FI+ + + + D++ Sbjct: 527 FTLPHPQKDQPVYGLSQDRQDNIVLIELLSVTAGKLPEGEMKTFIAKMQEGSSGVTFDAL 586 Query: 607 IAYLKSQYSVTVHDNLIQR 625 +A L Q ++ + Q+ Sbjct: 587 MANLHKQATIKMGPAEQQQ 605 >gi|170692414|ref|ZP_02883577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia graminis C4D1M] gi|170142844|gb|EDT11009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia graminis C4D1M] Length = 646 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 103/645 (15%), Positives = 232/645 (35%), Gaps = 41/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV + G+ S+ V SV K+ + + N+ Sbjct: 1 MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 60 RQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + LA +G+ +Y + ++ + G S Sbjct: 120 NDPVISSLKNPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPAAIQGSAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 ++ ++ EL+ Y+ N Y + ++ ++ADE Sbjct: 240 SPATVAASVQPADAELKKYYDDNIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKADE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F Q+A ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FGY I V+++KP+ T F EVK IA ++ AS+ +D + + Sbjct: 359 GIVQTDFGYHIVKVTDVKPAATKPFDEVKDQIARDLKTQLASKAFSDDSEGFTSIVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+ + + K+ + + +F + + + + Sbjct: 419 KSLQPAADKYKLQLQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVN-ARNNTQAIDV 477 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + + ++ + A L+ + V++ ++ E + E K Sbjct: 478 GGNTLIAARVTDYKAAAVPALDAIKDTVRQKVIAAQSNEAAHKDGIAKLAELEKS----- 532 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576 A+ ++ + N+ + +S ++ + + + + Y +++V Sbjct: 533 ------KATTGFSSPLKVSRNDAQGMPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRV 586 Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 G Q + Q+ ++ ++ + L+++ V + Sbjct: 587 NAVVTGGAVDPQRLAAAQQQIAQVQSQSEAEAYVEALRARSKVKL 631 >gi|114563758|ref|YP_751271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella frigidimarina NCIMB 400] gi|114335051|gb|ABI72433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella frigidimarina NCIMB 400] Length = 625 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 118/636 (18%), Positives = 250/636 (39%), Gaps = 35/636 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAK LV++ + F G+S L S +G V ++ + ++ Sbjct: 1 MLEKIREGSQGIVAKTILVLVILSFAFAGVSSYLGSNTG-VPAAVVNGDEIGANELEQAF 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E I Q++G + + + + G+ + +LD L++ +DQ +GL ++ Sbjct: 60 QNERSRIEQQLGEMFTALAADDSYMNGIKQGVLDRLIADKLIDQAANKLGLRVSDEQIKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F ++ +++ L + G + + ++R ++ VG + Sbjct: 120 AIIEEPAFQ-TDGQFDNERYLAVLRQLGYQTTSFRNMMRVDMTRRQLLNALVGSEFVLDG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+V+++ + ++ +++ Y +PE + Y+ Sbjct: 179 EAKQLAEVQGQTRDIRYLVVDSTPFLSTVSVADEEAQSYYDANISQYMSPEKVSLEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 +V + K E S++E++ YE+NK +Y + E R + ++ +AD L Sbjct: 239 NVADMAKSSETSDEEVKTYYEENKAQYQTAEKRLAAHIFVAATDDDSADKAKADAIEAKL 298 Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G+ F +A+ L F + + D + +++F L K + ++ F Sbjct: 299 TAGEDFADVAKADSDDQLSAQQGGKLDWFEQG-VMDPAFDEALFGLQKD-QVSSIVKSEF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I + +++ S +F+ VK I Q++ KA + +L + D ++ Sbjct: 357 GYHIIKLLDLQASQATAFENVKAKIVAQLQEKKALDVFYSLQTKLADTSYE--IPDTLAE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 + V+ + +D +V A + + F S + L + Sbjct: 415 TAQAVNAKVQSTQLFSRD----DVPAKFNNPEFIKAAFSDQVLASGLNSDVIELAPNHVV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++K+ A +EV + + K K + KA + + + K G + K Sbjct: 471 VIRMKKHQTAGVMSFDEVKAGIVERLKQDKANDGARDKAAEYMAQL-KAGND-----KLT 524 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 GASL T ++ R + + + ++ + V Y V V Sbjct: 525 GASLTTLAKLGRFNQDIDQAITNKAFKIAAPAENSVTIDTAALATGYAVIVVDKVNKAEG 584 Query: 585 QEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + ++ +V+A LK+ + Sbjct: 585 INDNLINTLKQRIAPQYSEADYRAVVASLKADAEIE 620 >gi|88860449|ref|ZP_01135087.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Pseudoalteromonas tunicata D2] gi|88817647|gb|EAR27464.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Pseudoalteromonas tunicata D2] Length = 633 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 120/630 (19%), Positives = 241/630 (38%), Gaps = 27/630 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ AKI L ++ + F + G+ L + V V QK+ ++F ++ Sbjct: 1 MLEKIREGSQGLTAKIILGLVILSFALAGIGSYL-GQTTEKPVAVVNGQKISQTTFARAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q+ G N S+ + + ++D LV Q ++GL + Sbjct: 60 ENERSRLEQQFGEYFNQIASDPTYMARVREGVIDRLVQQELQTQLANELGLRISDEAIKE 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI P F +FS+D ++ + + + ++ ++R+ +V Sbjct: 120 EIRTLPYF-NIGGQFSNDRYLQVIRQMNFQPDTFRNYLRTEMTRSQLVTAVAASDFALPN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R +DY++L V + ++ ++ + + + E + Y+ Sbjct: 179 EMVTISQLQTQVRDLDYVLLTADQVSKDITVTEQEISDYYTLNQSQFLSQEQVSVEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + +++DE+ A Y NK +Y PE R V ++ ++ +A + L Sbjct: 239 NAETLPVVKAVTDDEILALYNDNKAQYVEPERRRVAHILVDLGDDEAASEAKAQDLLAKL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G F QLA+ + + L ++ + D + ++ FSLA KGD + V+ F Sbjct: 299 KAGADFAQLAQSDSSDIVSAENGGDLDWIDRD-MMDPAFEEAAFSLAAKGDISDVVKSEF 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I +++++ + VK ++ ++ +E E RL E D +S Sbjct: 358 GFHIIKLTDLQAEQIKTLDMVKDELTARLEQDHKTEHFYELQTRLAELAFEVA--DSLSE 415 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 V ++ + + + +D + L + + + Sbjct: 416 AATAVEQEVKSTALFSRFDAPAPLNDAKVLDAAFSVELLEDKV--NSELIELGNEHVVVL 473 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE PA + L EV +K K E +++ ++L + S G + D+ Sbjct: 474 RVKEHKPAATKALAEVSDQIKAVLVKQKANEVNATRGDELYAKLS-SGTSLADLAAEQSL 532 Query: 527 SLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGP 583 + I R N D +V + NG +V V N+ V Sbjct: 533 QVEQARDIKRNAYNLVPGLAKDVFQMAHPVDKPVVNRITLANGDVALVSLLAVKNAPVTE 592 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613 + + K Q+ L+ + LK Q Sbjct: 593 LDARTKESINAEQINRNYLV--FVDALKQQ 620 >gi|207724194|ref|YP_002254592.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum MolK2] gi|206589405|emb|CAQ36367.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum MolK2] Length = 648 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 104/654 (15%), Positives = 238/654 (36%), Gaps = 44/654 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++L + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + K+I ++ ++L+ Y++N ++ + E R ++ +K A+E Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKK-GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F +LA++ LG +K ++F+L + GD + Sbjct: 300 VLAEVRKTPGNFAELAKKYSGDPGSAAQGGELGFLAKGATV-PQFDSALFALKQPGDISD 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I + +K S + VK ++ ++R A++K E + Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V G +++L +F D + +T V Sbjct: 419 SLKPVADKLKLQVQTADNVTRVPNPALGSSPIN---NDKVLKALFTDDVIKNHRNTQAVQ 475 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + ++ E PA +KL +V VK ++A ++ KA + L K+ + Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAALKQSNSA 534 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 G S ++ + + + Y +++ Sbjct: 535 EGFGAAQMISRQQAQG----------TPPAALAAILRADATKLPATIGVDLGAQGYALYR 584 Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + L Q + L++ LK++ V ++ +I Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADLNAYYEALKARSKVKINTTVIDAA 638 >gi|187923900|ref|YP_001895542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phytofirmans PsJN] gi|187715094|gb|ACD16318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phytofirmans PsJN] Length = 645 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 107/648 (16%), Positives = 239/648 (36%), Gaps = 47/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV + G+ S+ V SV K+ + + ++ Sbjct: 1 MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 60 RQQLDRARQMLGAQFDMKSFDTPERRAQMLDGLIEQRVLADETQRLHLTASDDAVRRVLM 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + LA +G+ +Y + ++ + G S Sbjct: 120 SDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + R A P++A L +++ +++ + P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQYVVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 + S+ +L+ Y+ N Y + ++ ++A+E Sbjct: 240 SPATLAASAQPSDADLKKYYDDNIAHYRTDGQVRASHILIAAPKDASAADKAKAKQKAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F Q+A ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGKAFDDAVFAL-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D + + Sbjct: 359 GIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKAQLASKAFTDDSEGFTSIVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVA 457 S+ + + K+ + K P L VF D ++++T A Sbjct: 419 KSLQPAADKYKLQVQTATVTPQ----PDPKLAPDSPLNNAKFLAAVFASDATTARNNTQA 474 Query: 458 LPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + G + ++ + A L+ V V++ V++ E + E+ K Sbjct: 475 IDVGGNTLIAARVTDYKAAAVPALDAVKDAVRQKLIAVQSNEAAHKDGVAKLAEFEKS-- 532 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573 ++ ++ + N+ + +S ++ + + + + Y + Sbjct: 533 ---------KSTAGFSSPLKVSRNDAQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAI 583 Query: 574 FKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 ++V + G + + + Q+ + ++ + ++++ V + Sbjct: 584 YRVNSVVAGTTVDPQRLAAAQQQIAQVDAQSEAEAYVEAVRARSKVKL 631 >gi|288941155|ref|YP_003443395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium vinosum DSM 180] gi|288896527|gb|ADC62363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium vinosum DSM 180] Length = 645 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 117/646 (18%), Positives = 252/646 (39%), Gaps = 41/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ ++ W+A ++++ +PF +WG+ L V G +V ++P Sbjct: 1 MLQTIRERAQGWIAWAIVILISIPFALWGIQSYL-GVGGEPIAATVNGVEIPARELDRRV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + +++G + L ++L+ L+ A L + +GL V +I Sbjct: 60 QETRFELRERLGAAYDPAAFDDQRLRAEVLETLIQEALLMDVVGRLGLRVSDQEVQMQIL 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F D + L +G+ Y + +S T ++ + LD Sbjct: 120 SDPAFVSE-GRFDKDTYERLLRFQGLTPAMYEAQLRQKMSATQLIRAVSSSELATRAELD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 KR + R + Y+ L A +T +++ + +++PE R+ Y++ D Sbjct: 179 TYKRLMGQKREISYLRLPLAEHRTDEPIDEARITAYYDSNRARFQSPEQVRLDYLVLDTD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQ 288 K+E+S ++L+ Y ++ ++ PE R V L+ E Sbjct: 239 ALSSKVEVSEEDLRQLYASDQARFAQPERREVRHLLLKVDADADEAAARAVLDEIQAIRA 298 Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 ++ G+ F +LA+ + G + SLG + + + F+L K G+ + + Sbjct: 299 RIQAGESFEELAKTLSQDPGSAAKGGSLGVIESGIMV-PAFDQAAFAL-KTGELSEPVRT 356 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FGY + V I PS F++V++ + ++ +A E +RL S D + Sbjct: 357 PFGYHLIEVVQILPSKAKPFEDVREPLRAELAKQRAEGLFYELAERLANISYE--SPDSL 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SY 463 + + + + D+ G++ + + + P F + D D Sbjct: 415 DPAAEALGLTIQHSDWIGRNGGDEGLLSHPKVMAAAFSEDVLVGGNNSDLIEPERDRLQA 474 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + +++ E A + L+EV ++ + + S + + E ++G + G+ Sbjct: 475 IVLRVAEHREASVKPLDEVREEIVAAIRDEQARAAAKSA-AEALAEKLRDGSGWSVAGEE 533 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNS 579 L + ++R E + F PV + + VV ++T Sbjct: 534 LKPE--SPGLVSRQSAE---VPAGVLDAAFKLPVPTDGAVSVGTAILDDSDAVVVRLTKV 588 Query: 580 KVGPVQEKDKFIS--------YLTQMMNKDLLDSVIAYLKSQYSVT 617 + G V+ + +TQ+M + +V+ ++S+ + Sbjct: 589 EDGQVEADGEGGEDGFSAESFIITQIMGRQAYTNVLEDMESRAKIE 634 >gi|159044344|ref|YP_001533138.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter shibae DFL 12] gi|157912104|gb|ABV93537.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter shibae DFL 12] Length = 614 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 127/628 (20%), Positives = 266/628 (42%), Gaps = 29/628 (4%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 ++ + + I L +L V +G+S ++ V SVG + + + + +L Sbjct: 1 MKGKTSNFFMFILLGLLIVALAGFGISSF---GGSNARVGSVGDTDITVDEYARALQTQL 57 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 Q+ G V+ AR +GLD+++L LV+ A +D +G+ RV +I P Sbjct: 58 RAAGQQRGRAVSMAEARELGLDRQVLAQLVNTAAIDNEAAKLGVSVGDMRVAEQIQTIPA 117 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G F + + L + ++ +E+ +R + +GG+R Sbjct: 118 FSGIGGGFDREAYEFTLQQNNLSPEEFEADVRNEAARNLLQAAVIGGLRAPQAYTGTLYD 177 Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 F R + + V A P++A L +++ + APE + I+Y+L + Sbjct: 178 FIAARRDFTWAEITPDLVALTQAMPTDAELRAFYDANPAAFTAPETREITYVLLSPEMMQ 237 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302 ++ S ++L+A Y++ Y PE R ++++VF + +A EA +L G F +L Sbjct: 238 DQVSPSEEDLRAAYDRAASVYVQPERRLLDRVVFGTEAQAAEAKAALDSGAQSFEELLAA 297 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + SL D+ LG +++ + D ++A+ +F + G + + G + ++ + Sbjct: 298 RDLSLEDVDLGEVARDDLDD-AVAEVVFGDQETG-IVGPVRTALGPALFRINAALAAQVT 355 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 +F+E + ++ + A V ++ + L++ LA G +++E++ +L + Sbjct: 356 TFEEARDELTAALAGDAARRAVADEIEALDDLLAGGATLEELAAD---TPAELGELSLTA 412 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 +G +AA P L + D P L DG +++ E +P R +EV Sbjct: 413 TTTEG--IAAYPEVRALANTLSEGDFP----EIETLDDGGVFALRLDEVVPPRLLPFDEV 466 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 DV W+ + + +S++A + V E + G++F D G + R Sbjct: 467 REDVVAGWEAQRLQDALSAEAAR-VAEALRGGESFAD----QGLERQVETGLTREAFIEG 521 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK------FISYLTQ 596 ++ VF+ E NG+ +V ++T ++ D ++Q Sbjct: 522 T-PPALVTDVFALEAEGDVALVPGNGV-VIVAQLTAILPPDTEDPDAAFLRNVLDQSISQ 579 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + +D+ + ++ + +T++ + I Sbjct: 580 TLAEDVFTAYATAIQQEAGITINQSTIN 607 >gi|170727449|ref|YP_001761475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi ATCC 51908] gi|169812796|gb|ACA87380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi ATCC 51908] Length = 619 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 123/637 (19%), Positives = 255/637 (40%), Gaps = 45/637 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ +AK LV++ + F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGS-STEAAAATVNGEEISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ LDQ ++GL ++ Sbjct: 60 QSERARLEQQLGEMFEALAADDSYLASVKQSVLERLVAEKLLDQSATELGLRVSDEQIRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +D + + L + G + D ++R +V VG Sbjct: 120 AIMTEPAFQ-TDGKFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R + Y V++ A A S+ +++ + +PE + YI Sbjct: 179 EADYLAGIQGQTRDIRYHVIDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + + ++++E Q Y++NK++Y PE R ++ + +AD + L Sbjct: 239 NAKDMANDVVVTDEEAQTYYDENKQQYLKPEKRLAAHILVNLGDDESAAKAKADAIYAKL 298 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + G++F +LA+ + + L F K + + D +FSL+ G+++ V+ SF Sbjct: 299 QAGEEFAELAKTESEDTFSGEQGGQLDWFEKG-VMEPEFDDVLFSLS-NGEYSAVVKTSF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I + +++P F++VK I Q++ A + + L + D +S Sbjct: 357 GYHIIKLLDLQPGAEAPFEDVKAKILAQLKEKHAIDTYFGLQQTLADVSYEVP--DTLSE 414 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 K + +++ ++ K +L F L + + M Sbjct: 415 AAKELGVEVQTTPVFARNSAPAPF----DKPDVLKAAFSDSVLLDGMNSDVIEVDANHAM 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++IK A ++V + + + + + E +A +L+ + + Sbjct: 471 VIRIKSHTAAGTVAFDKVKSGIVQRLQQEQANEVAREQAQELMTAFP-----------ST 519 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579 +T R + + I++ F +V + +G + +V KV + Sbjct: 520 EVEFVTKTNAGRFEQD---IDGAIINKAFQMAQPADSAVVDTVALASGYAVIVLDKVNAA 576 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + L ++ ++IA LK+ V Sbjct: 577 QGIDENMLGALKQRLNAQYSEGSYRALIATLKANSEV 613 >gi|183601065|ref|ZP_02962558.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827] gi|188019406|gb|EDU57446.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827] Length = 618 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 109/628 (17%), Positives = 245/628 (39%), Gaps = 24/628 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R + + K+ L ++ + F++ G++ + S S+ V Q + F ++ Sbjct: 1 MMDNLRTKANSPFIKVLLAIIILSFVLTGVAGYMIGGS-SNDAAKVNGQSISREQFQTAF 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE + +G + L ++L+NL++ + ++ ++ L A +V Sbjct: 60 SQERQSLQDSLGDKFSEIAGNEESMKFLRNQVLNNLINSTLMAEYANELNLSASDQQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P+F + KF D + LA + + L + + F+ Sbjct: 120 AIFEMPVFQ-TNGKFDGDKYRQILAANNYSADNLAEQVRANLILSQLSDSFIKTDFALPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + L+ A + + ++ +D++ APE ++SY+ Sbjct: 179 EVKTYAELVLQEREIRVATLSLADEQAKQTATEDEIKAYYNANQDSFIAPEKVQVSYVEI 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D ++++E++ YE+N + Y E + + ++KEA+ LK G F+ Sbjct: 239 DAAALP-PQSVTDEEVKTYYEQNLKNYTQAEQKHYSMIQVASEKEANAIIDELKAGADFV 297 Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA E+ LS + G +L +KG + I +VI + +I Sbjct: 298 ALATEKSTDKLSAGNKGIIGWMEEASTPSEIVNANLTEKGQISTPIKSDSNFVIFRLDDI 357 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP VK +I N++ K S++ + +++ E A + ++ E++ + + Sbjct: 358 KPESIKPLDSVKDEIKNKLIQDKNSKQFYDLQQKVSE--AATNDNESLASVEEVSGLKVV 415 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 D+ K+ + ++ R+ ++ + V G V++ + P Sbjct: 416 ATDWFDKNNPPAALNYPKVINEIFSERLVDQNGSTGINSDVIDVQGDRAFVVRVSQYAPE 475 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 + + LE V + V+ K K + ++ +LV KEGK G ++ Sbjct: 476 QTQPLEAVKSQVETLVKRQKANAALKAEVEKLVAAL-KEGK-----GDTANIQFSAPEKV 529 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEK--DKF 590 +R+ + G + P + + + + V+ ++ G +K ++ Sbjct: 530 SRLMPQTPVIGAAM---AMAKPADGKATYTTVRDEKDNLVIIQLDKVIPGKASDKELEQL 586 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + MM + +++I L++ + V Sbjct: 587 TANYRGMMGMAVNEALIQNLRNNAKIEV 614 >gi|149192497|ref|ZP_01870682.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1] gi|148833670|gb|EDL50722.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1] Length = 432 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 85/429 (19%), Positives = 188/429 (43%), Gaps = 12/429 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E IR+ + KI L ++ + F+ G+ + G +T VG ++ F ++ Sbjct: 1 MMERIREGVNSIAVKIILGLIILSFVFAGVGSYIAGGIG-NTAAKVGNVEIGRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G ++ + + K +LD +++ L+Q E +GL ++ Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPSYVASFRKSVLDRMINDVLLEQHAESLGLRISDAQIRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF D++ + L R G + + ++ + L R ++ G Sbjct: 120 MILEMPQFQN-DGKFDQDIYQATLRRAGFSADSFAEYLRRDLVRNQLLTALQGSEFTLPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R + + L+ A ++ + +++E+ + PE +++YI Sbjct: 179 EIELQSKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + ++++++DE+Q Y+++ +KY + E R V ++ ++ +A L G Sbjct: 239 SAQALKDQVKVTDDEIQKYYDEHLDKYSTSEQREVSHILVQGDDEAKAQAILDELNAGAD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E+ + + SLG ++ + D + ++ F+L GD T ++ FGY I Sbjct: 299 FATLAKEKSEDIGSSEEGGSLGWIERD-VMDPAFEEAAFALKNVGDTTGLVKSDFGYHII 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + IK S + EVK +I +++ A ++ E S+D+ ++ Sbjct: 358 KLDAIKASESKPLAEVKDEIIAELKDQVAVDEFYNLQTTREGCFRYPDSLDDAAKAVNQK 417 Query: 412 SIDLPLVDF 420 + + Sbjct: 418 VVTTDFISQ 426 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 30/287 (10%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319 ++ P ++ + ++ SL K Q+ +E+ + + + G F++ Sbjct: 170 QGSEFTLPSEIELQSKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPE 229 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 V+ + K V I+ + + ++ Sbjct: 230 QVKVAYIELSAQALKD----QVKVTD--------DEIQKYYDEHLDKYSTSEQREVSHIL 277 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + + + + L G +++ S D+ + G + P E+ Sbjct: 278 VQGDDEAKAQAILDELNAGADFATLAKE---KSEDIGSSEEGGSLGWIERDVMDPAFEEA 334 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 F + D + D Y +++ + + L EV ++ + K +E Sbjct: 335 AFALKNVGDTTG----LVKSDFGYHIIKLDAIKASESKPLAEVKDEIIAELKDQVAVDEF 390 Query: 500 SSKANQLVLEYSKEG-----KNFRDIGKNLGASLLTTNQINRMDNEN 541 + L+ ++EG + D K + ++TT+ I+++D Sbjct: 391 YN------LQTTREGCFRYPDSLDDAAKAVNQKVVTTDFISQVDAPE 431 >gi|209521454|ref|ZP_03270162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] gi|209498110|gb|EDZ98257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] Length = 644 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 98/646 (15%), Positives = 231/646 (35%), Gaps = 45/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV+L G+ ++ V SV K+ + ++ Sbjct: 1 MLDFFRTHQRLMMFMLILVIL-PGLGFVGIQGFRGFFDENANVASVNGHKITRVEYDDAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + + +LD ++ L + + L A V + Sbjct: 60 RQQLDRGRQMLGAQFDMKSFDTPERRRMMLDGMIEQRVLADETQRLHLTASDDAVRRTLM 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + LA +G+ +Y + L+ + S Sbjct: 120 SDPVISSLKNPDGSIDLDRYKQLLAMQGMTPDQYDERVRYNLAMQQLPASIEASAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLTELAQQQREVQGIAFHPHDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 ++ S+ +L+ Y+ N + + ++ + A+E Sbjct: 240 SPATLSASMQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASAADKAKAKQTAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F Q+A ++ G + LG F + I + D+ F+L KK + + Sbjct: 300 LLAQVKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAAFAL-KKDEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FG+ I V+++KP+ T SF EVK IA +++ A++ + + + Sbjct: 359 GIVQSDFGFHIIKVTDVKPTVTKSFDEVKDQIAKELKTQLATKAFTDSSEGFTSLVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456 ++ + + K+ + + P + L VF D + + Sbjct: 419 KTLQPAADKFKLQIQTATVTPQPDAKLPPDSPLNNP---KFLAAVFANDSVSAHNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA + V V++ ++ E + E+ K Sbjct: 476 DVGNNTLIAARVTDYKPAAVPAFDAVKDAVRQKVIAEQSNEAAHKDGIAKLAEFEKS--- 532 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 ++ ++ + N+ + +S ++ + + + + Y ++ Sbjct: 533 --------KSTTGLSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIY 584 Query: 575 KVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +V + + Q+ + ++ + L+ + SV Sbjct: 585 RVNQIVPPAATDAQHLAAAQQQIAQVDAQSQAEAYLKALRERSSVK 630 >gi|83745917|ref|ZP_00942974.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551] gi|207743054|ref|YP_002259446.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum IPO1609] gi|83727607|gb|EAP74728.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551] gi|206594451|emb|CAQ61378.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum IPO1609] Length = 648 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 104/654 (15%), Positives = 240/654 (36%), Gaps = 44/654 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++L + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + K+I ++ ++L+ Y++N ++ + E R ++ +K A+E Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F +LA+ + G + LG +K ++F+L + GD + Sbjct: 300 VLAEVRKTPGNFAELAKKYSEDPGSAAQGGELGFLAKGATV-PQFESALFALKQPGDISD 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ + + +K S + VK ++ ++R A++K E + Sbjct: 359 VVQSDFGFHVIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V G +++L +F D + +T V Sbjct: 419 SLKPVADKLKLQVQTADNVTRVPNPALGSSPIN---NDKVLKALFTDDVIKNHRNTQAVQ 475 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + ++ E PA +KL +V VK ++A ++ KA + L K+ + Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAALKQSNSA 534 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 G S ++ + + + Y +++ Sbjct: 535 EGFGAAQMISRQQAQG----------TPPAALAAILRADATKLPATIGVDLGAQGYALYR 584 Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + L Q + L++ LK++ V ++ +I Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADLNAYYEALKARSKVKINTTVIDAA 638 >gi|257093852|ref|YP_003167493.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046376|gb|ACV35564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 635 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 110/650 (16%), Positives = 266/650 (40%), Gaps = 48/650 (7%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 + +R R V ++FL ++ +PF WG+ + + + + SVG K+ F +W+ Sbjct: 3 FDAVRNNKR--VVQVFLALITLPFAFWGVDSYVRNSGAGTDLASVGDSKITRPQFDQAWR 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + Q +G E + +L++LV L L + I + Sbjct: 61 VQQDRMRQVLGANFRPESMNTPEAKLAVLNSLVDQRLLLIEAAKDRLAVGDDLLREVIGK 120 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS + + LA +G+++ ++ + L+ +V S D Sbjct: 121 IPALQ-ENGQFSLARYRAVLAAQGMSQSQFEAQVRQDLTLQQLVAAIGDTGIASTTTADA 179 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 R E R V + + A + ++++ + + E + +++ + Sbjct: 180 MLRIQSEERQVAELRFSPDQFLERVQVDPAAVRKFYDDNANRFEIAEQAKAEFVVLSLDG 239 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292 +K ++S+ E+ YE +K++Y PE R ++ + +A+E + ++K Sbjct: 240 LLEKAKVSDAEVTGWYESHKDRYQQPEERRASHILILANADVDREKARAKAEEVLKEIQK 299 Query: 293 -GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 +F +LA+ + G + LG F + + + D++F A++ + + ++ FG Sbjct: 300 SPGRFAELAKQHSQDPGSAEKGGDLGFFGRGMMVK-AFEDTVFK-AQENEVSGLVQSEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 Y I V+ IK + +V+ +I +++ AS + E + + S+ + Sbjct: 358 YHIIKVTGIKVGTQRALVDVRPEIEAELKRQAASRQFAEAAEAFSNLVYEQPDSLQPAAD 417 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPY-----KEQLLFRVFGKDDPLSKDHT--VALP 459 R K+ + +G + V A+P ++L +F +D ++ +T V + Sbjct: 418 RFKV------TIQQSGWLPRNPPVEALPALGQLNSPKVLAALFSEDSLKNRRNTEAVEIA 471 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + ++ E PA R + V T+++ KT + A ++ KA + L ++G Sbjct: 472 PNTLLAARVIEHRPATVRPFDTVKTEIEASLKTQEAA-ALARKAGEAQLGQLQQG----- 525 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVT 577 + +++R+++ + +F V + + G +YV++K+ Sbjct: 526 --AESKVAWGPAREVSRIESRQ--LPAVALKAIFKANVGKLPAYAGAEVGGGNYVLYKIM 581 Query: 578 NSKVGPVQEKDKFISYLTQM---MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + + + + ++ + +A L+ +Y + ++ + ++ Sbjct: 582 RVSHPEKVDDKRRAALQREQETILAQEDFAAYLAGLRLRYKIDINKSALE 631 >gi|300703976|ref|YP_003745578.1| peptidyl-prolyl cis-trans isomerase (rotamase d) [Ralstonia solanacearum CFBP2957] gi|299071639|emb|CBJ42963.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum CFBP2957] Length = 649 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 106/649 (16%), Positives = 235/649 (36%), Gaps = 34/649 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + GS VG + S Sbjct: 1 MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDAVITTSELDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ + L +V I Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRVMANEASRTNLSIADSKVRETIE 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D KF D ++ LA +G+ +++ L + V Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARVRSELVLQQIPQSIVASAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + R V ++L + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIDARDQQREVQALLLKPADYVSKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + K+I ++ ++L+ Y++N ++ + E R ++ +K A+E Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNVARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299 Query: 286 AFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F +LA++ LG +K ++F+L + GD + Sbjct: 300 VLAEVRKAPGNFAELAKKYSGDPGSAAQGGELGFLAKGATV-PQFESALFALKQPGDISD 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I + +K S + VK ++ ++R A++K E + Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V G +++L +F D + +T V Sbjct: 419 SLKPVADKLKLQVQTADNVTRVPNPALGSSPIN---NDKVLKALFTDDVIKNHRNTQAVQ 475 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + ++ E PA +KL +V VK ++A ++ KA + L K+ + Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSA-ALAKKAGEEKLAAVKQSNSA 534 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 G S + P + + Y + KV Sbjct: 535 EGFGAAQTVSRQQAQG-----TPPAALAAILRADAAKLPATIGVDLGAQGYALYRINKVL 589 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + L Q + ++ LK++ V ++ +I Sbjct: 590 PPANVDPARRAADAQQLAQADGQADFNAYYEALKARSKVKINTTVIDAA 638 >gi|237748739|ref|ZP_04579219.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13] gi|229380101|gb|EEO30192.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13] Length = 647 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 119/646 (18%), Positives = 251/646 (38%), Gaps = 45/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR R I LV + F+ G+ G V V + + + N+ Sbjct: 1 MLEFIRNHKRLTQI-ILLVFIIPSFIFVGVEGFKRFGDG-DAVAKVAGKSITQQEWDNAQ 58 Query: 61 KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ + Q+ G +++ S +L NL+ L + + L V Sbjct: 59 REQAERLRQRAAASGQPFDNKWIESSEFKWNVLQNLIVKRVLLETVNKENLSVPEQIVLQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P G D K + LA +G+N + + ++ + Sbjct: 119 RIREIPGLIGPDGKLDEARYKEALAAQGLNPDMHFAMVRQDMAIQQLAAPIEYSAIEPTA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + R V ++ NN + ++ L +++ ++ + PE+ + I+ Sbjct: 179 VTQRVFNLFEQEREVQHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVEVIVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADE 285 D+ K I+IS+ +LQ+ Y +NK+++ PE R + ++ +K+A+ Sbjct: 239 DMPSVAKNIKISDADLQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAEKSEAKKKAEG 298 Query: 286 AFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 LK +F +LA+ + G + + LG F++ + D++F + KKGD + Sbjct: 299 ILAELKANPARFAELAKANSQDPGSAQNGGDLGFFTRGKMVKP-FNDAVFGM-KKGDISD 356 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 ++ FGY I VS+IKP+ +V+ + ++ +A+ K E + + Sbjct: 357 LVQTDFGYHIITVSDIKPAVAKPLAQVRDRVLQELTREQANRKFAEMSETFSNMVYEKPD 416 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ K+ P + A + + ++L +F D K +T + Sbjct: 417 SLKPVADALKLTIHSFP--NLARDPAIAAKQNQLLANPKILQAIFTDDVVKGKHNTEAIE 474 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + +I + PA ++V + + K + + A + L KEG N Sbjct: 475 AAPQVLVAARIAKHYPATLTPFDKVKQVITAEVINEKAQKLAKA-AGEAELAKLKEGSNA 533 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 ++ S NR + ++ V V + + + G+ YV+++ Sbjct: 534 NGFSSSIMVSRHKIAMANRAE----------LAPVMKADVSKLPAYVGADVPGMGYVIYR 583 Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +T +K + + + ++ L++ + YLK + V + Sbjct: 584 ITKVVTPSNPDKNLREAMSKQMANVASQQDLNAYLNYLKKEAKVEI 629 >gi|313201268|ref|YP_004039926.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. MP688] gi|312440584|gb|ADQ84690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. MP688] Length = 632 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 113/647 (17%), Positives = 243/647 (37%), Gaps = 47/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S++W+AK+ L + +PF I G+ L S ++ V + + + NS Sbjct: 1 MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + + + + ILD L+ L+ + + I Sbjct: 61 QRLRNQLQAE--GKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHII 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ KFS + + L + ++ L + Sbjct: 119 TLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISK 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + R V + A + +++++KD ++ PE ++ ++LF + Sbjct: 178 QTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSN 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288 K+++S++E++ Y++N K+ E R ++ +K+A+E Sbjct: 238 NLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATAEAKQQAKKQAEEVLA 297 Query: 289 SLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +++ F LA++ K LGSF + + D++FS+ K G+ + ++ Sbjct: 298 QVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKP-FEDAVFSM-KPGEISNLVE 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FGY I ++ I + F K I ++ KA E + + TS+ Sbjct: 356 SEFGYHIIKLTEIT-GQSQGFDAAKPQIKAELLYQKAIALFAEQAESFNNMVYEQSTSLK 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460 ++ + + A + A ++L+ VF ++ K +T V + Sbjct: 415 PVADAFGLQVQHTDWISHA-------DGAKYFKSDKLMNMVFAEEVLKDKRNTEAVEVSP 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + + ++ + PA R EEV ++ K + A+ K + + + Sbjct: 468 NNLISARVVDYKPAAPRSYEEVKAGIEGVLKAEQAAKLAIKKGEAALADLRQ-------- 519 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578 GK+ + I+R + + ++ F V + + ++ Y++ KV Sbjct: 520 GKSPQLDWIPPVTIDRSNAQG--LTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNG 577 Query: 579 SKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 P E L + + + + + LK + +TV+ L+ Sbjct: 578 VNTPPANEDTDKASARELQAALASEYVAAYVKSLKDKSKITVNSRLL 624 >gi|188534628|ref|YP_001908425.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia tasmaniensis Et1/99] gi|188029670|emb|CAO97549.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia tasmaniensis Et1/99] Length = 622 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 120/639 (18%), Positives = 254/639 (39%), Gaps = 32/639 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R AS KI L ++ + F++ G+ L SG V Q++ + ++ Sbjct: 1 MDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQLERAFS 59 Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E Q +G + S + ++ L L+ L Q+ +DIGL ++ Sbjct: 60 SERARQQQMLGEQFSVLASNEGYMQQMRQQTLSQLIDEVLLTQYAKDIGLTIGDDQIKQA 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F +F + ++S + G + +Y + K L+ ++ Sbjct: 120 IFTQPAFQTA-GQFDNAKYLSIINNIGFSADQYAEALRKQLTTQQLINAVTKTDFVLGNE 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 D + R V + ++ + A D + ++ ++++++ + + E R+SYI D Sbjct: 179 ADSLAALVSQQRLVREVTIDVNALAAKQDVTQEEISNYYQQHQSSLMSSEQFRVSYIKMD 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +S ++Q+ YEK+++ Y P+ + + EA SLKKG F + Sbjct: 239 AAAM--EQAVSESDIQSWYEKHQDDYTQPQRNRYSIIQTNTEAEARSVLDSLKKGDDFAK 296 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ + +G + PD SL +KG + VI S G++IA + Sbjct: 297 LAKEKSVDPISARNGGDMGWLEPQTTPD---ELKGASLKEKGQLSGVITSSPGFIIARLD 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +P EV DIA +++ KA + +++ + A + ++ E++ + Sbjct: 354 ETQPEKVKPLSEVHDDIAAKLKQEKAVAAFYKLQQKVSD--AASNDNESLASAEQVAGVK 411 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESI 472 D+ +D ++ ++ + + G++ + V DG +V +I E Sbjct: 412 AVDTDWFDRDNLPADLKFKAVQDAIFNGALLGENGAPGSNSDVISVDGDRAFVLRIHEHK 471 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P + L++V + K K ++ ++A++L+ E K GK D K Sbjct: 472 PEAVKPLKDVTAQITATLKQQKALQQAKTQADKLLAEL-KAGKG-DDALKAADLKFAAQQ 529 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQE 586 + RM + FS P+ ++ + V+ + + G P + Sbjct: 530 TLTRMGQD------ALSQAAFSLPLPSEGKPSYGVSEDDKGNVVLIALDKVQKGEIPEAQ 583 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K + +TQ + ++++ L+ + + + Sbjct: 584 KQSLVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 622 >gi|307729660|ref|YP_003906884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] gi|307584195|gb|ADN57593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] Length = 646 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 101/645 (15%), Positives = 232/645 (35%), Gaps = 41/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV + G+ S+ V SV K+ + N+ Sbjct: 1 MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDNAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 60 RQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + LA +G+ +Y + ++ ++ G S Sbjct: 120 NDPVISSLKKPDGSIDVERYKQLLAMQGMTPDQYDERVRYSIATQELPASIQGSAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKIQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 ++ S +L+ Y++N Y + ++ ++A+E Sbjct: 240 SPATLAASVQPSEADLKKYYDENIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F Q+A ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FGY I +++KP+ T F EVK+ IA ++ AS+ +D + + Sbjct: 359 GIVQTDFGYHIIKATDVKPAVTRPFDEVKEQIARDLKTQLASKAFSDDSEGFTSIVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+ + + K+ + + +F + + + + Sbjct: 419 KSLQPAADKYKLQVQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVN-ARNNTQAIDV 477 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + + ++ + A L+ + V++ ++ E + E+ K Sbjct: 478 GSNTLIAARVTDYKAAAVPALDAIKDAVREKVIAAQSNEAAHKDGIAKLAEFEKS----- 532 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576 A+ ++ + N+ + +S ++ + + + + Y +++V Sbjct: 533 ------KATTGFSSPLKVSRNDAQGVPAAALSAIYKADAQKLPAYVGVDLGDAGYAIYRV 586 Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 G Q + Q+ ++ + I L+++ V + Sbjct: 587 NAVVAGGPVDPQRLAAAQQQIAQVQSQSETQAYIDALRARSKVKL 631 >gi|218888106|ref|YP_002437427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759060|gb|ACL09959.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 630 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 117/645 (18%), Positives = 248/645 (38%), Gaps = 40/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE+IR +++W KI ++ + F+ WG+ S S + +V ++ + F + Sbjct: 1 MLELIRAHAQSWGVKIAFGIIILVFVFWGVGS--MHNSSSGALATVNKKPILIQEFGREY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + + + +E + +GL +++L +++ L IGL + I Sbjct: 59 ERQVETLRSRYPG-ITAEDMKQMGLKRQVLQAMITERLLADEAARIGLSVSPVELRRSIE 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D +F +V+ S L + + + D + + + ++ Sbjct: 118 SITAFRNGDGRFDAEVYRSVLKGQQTSPGRFEDGIRRDMLLQKLRDRVAAPASVTDEEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R+++Y++ P++ + + + + D +R P+ + + Sbjct: 178 ALFDYGRERRTIEYVLFPLEDYVLKVTPTDEQIAERYNENMDAWRNPQRISLDAVTLTPA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVF------------PNQKEADEAF 287 +EI + A Y N E YF PE ++F + +A++ Sbjct: 238 SLATSVEIPESAVAAFYADNAETYFVVPERVHARHILFMAQEGASKDEDAAARAKAEDVI 297 Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 LKKGK F LA ++G LG F+K + ++ F+L K G+ + + Sbjct: 298 AQLKKGKDFASLAAKLSDDKGSGAQGGDLGWFTKGQMV-PPFEEAAFAL-KPGEISAPVR 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +FG+ + + + T + EV+ +I ++ KASE++ E E G S+D+ Sbjct: 356 SAFGWHVIKMEAHETQRTRALDEVRGEIRQRLGEEKASERMHEALDTALEMAGAGKSIDD 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 I++ K+ L A V A+ K Q + F D + + +G Y Sbjct: 416 IAKALKLEHKPTGLFSRADAGV------AVGLKGQSVGTAFSTPAGTVIDTPLEV-EGGY 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 M + ES P LE+V +V + ++ A+ A + + + + Sbjct: 469 MIAAVLESQPESVTPLEKVKEEVAAQVRRIEGAKLAVKAAQEAGAKLA------DGVPAE 522 Query: 524 LGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 L A + T R F + F+ + P++ V+F+V + + Sbjct: 523 LAARVKTAEPFGRNGFIAPFGQSRALVDAAFAAAPGAWQPAPVDTSSGAVLFRVKDVQRP 582 Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 E + + + ++L + L + + + + + Sbjct: 583 GDAEWSAAAETVRATVLSAKREELFRVFVGELSAAAKIELRNAKL 627 >gi|317485995|ref|ZP_07944850.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922768|gb|EFV43999.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 629 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 105/646 (16%), Positives = 241/646 (37%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++IR +++W KI ++ + F+ WG+ + S+ +++V + + F + Sbjct: 1 MLDLIRANAQSWGVKIAFGIIILVFVFWGVGG--LTGGPSTVILTVNGEPITIQEFQRKY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q + + +++ +++ L ++++ NL+ + Q + +G+ + I Sbjct: 59 EQLEQQVRAQYPD-LDAAGLKAMQLKQQLIQNLILENLIMQEAKRVGIVVTPVELRKLIE 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH + KF D +V + + + + + G + Sbjct: 118 SFPAFHNAEGKFDPDAYVRVIKAQRNTPGNFEAELRNNMLMNKLRADVTAGAFVPEAEVR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R+ E R ++Y+ + +A + ++E + ++ P + Y+L Sbjct: 178 DLFRYEGERRILEYVFYPLEDYTSKVTVDDAQIKDYYEANQASFTVPPQADVEYLLIGAE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 IS+ + YEKN ++ +PE+ ++ + +A +E + Sbjct: 238 ALAAAQNISDAAVSEYYEKNAAQFATPEMVRARHILILSDAKASAEDQAKAKAKIEEIAK 297 Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F ++A+E G LG F+ + + F+L G+ + + Sbjct: 298 RIKAGEDFGEVAKEVSEDPGSGPQGGELGWFAHGQMV-PEFDKASFAL-NPGELSEPVKT 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + K + EVK I ++ +AS KV+E ++++ + G S+ E Sbjct: 356 QFGWHLIQLEEKKAAGQKPLDEVKDQIRTRLAQDEASGKVQEALEQVQLAVIGGKSLKEA 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 K+ + LV+ +++ P L P + T + Y+ Sbjct: 416 GEPLKLAPQETGLVNTTELT---EKMGIKPENLPALLAA----KPGTVLDTPFVTKTGYV 468 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++ ES P + L+ V D+K + K AN ++ D+ K L Sbjct: 469 IAKVNESKPQTVKPLDAVKDDIKARLQQDKARTLAFEAANAERKTFT------ADLPKEL 522 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKV 581 L T + R + +++ + ++ G V+ +V Sbjct: 523 QGKLKKTEPVGRQGYMGELGMNAELAKAAFAAKVNEWFPVAYTLDGGA--VIARVAEVVT 580 Query: 582 GPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 ++ +T + + ++ L+S + + + I Sbjct: 581 PSDEDWKTAAPQITDAVLNAKREQMFRGFLSLLRSNAKIELKNETI 626 >gi|187928946|ref|YP_001899433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] gi|187725836|gb|ACD27001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] Length = 646 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 94/652 (14%), Positives = 242/652 (37%), Gaps = 44/652 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + S V + + + Sbjct: 1 MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ L + L + ++ I Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVVRANLTISNEKIRDTIL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D F + +V L+ + + ++ + LS+ + V Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+++ + + R V ++ A + + + +++ ++ + PE + Y++F Sbjct: 180 LVERLIQVRDQQREVQTLLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285 E K+I ++ ++++ Y++N ++ + E R ++ +A+E Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299 Query: 286 AFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F +LA++ LG K +++F+L + GD + Sbjct: 300 VLAEVRKNPASFAELAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISD 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I + +K + VK ++ ++R A++K E + Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ + K+ + D + + + +++L +F D + +T A+ Sbjct: 419 SLKPVADKLKL---QIQTTDNVTRTPSPAQSGSPIGNDKVLKALFADDVIKNHRNTAAIQ 475 Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G + + + E PA +KL +V VK + A ++ KA + L K+ + Sbjct: 476 VGPTTLVAARAAEYRPATVKKLADVREQVKAKVIAEQAA-ALAKKAGEEKLAAVKQSNSA 534 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 G ++R + ++ + + + Y +++ Sbjct: 535 DGFGAA--------QTVSRQQAQGT--PPAALTAILRADATKLPTTIGVDLGPQGYALYR 584 Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + L Q + ++ LK++ V ++ + + Sbjct: 585 INKVLPPANVDETRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 636 >gi|126461486|ref|YP_001042600.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides ATCC 17029] gi|126103150|gb|ABN75828.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides ATCC 17029] Length = 621 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 129/618 (20%), Positives = 266/618 (43%), Gaps = 31/618 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V + ++ V +G+++ G STV SVG + + ++ + +QE+ + +I Sbjct: 20 VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 77 QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + L + ++E E+ + ++R+ + G GG +++ + E RS Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSF 196 Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + ++ A P++A L W+E + ++ APE KRI+Y + + Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEA 256 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG S++ + AD++F+L + G + G + V+ + + F+EV+ D+ Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPFEEVRDDL 373 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + + A + +++++ LA G ++++++ + + D +A Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD-----IA 428 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 ++ D P T+ L DG + +++ E +P + + EEV DV + + Sbjct: 429 GYEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVPPKLKPFEEVRDDVAEAAR 484 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + ++++A ++ + ++EG + G + + R D + + Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605 F + + V ++ + + K + + Q +++D L Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQALSQDALAL 595 Query: 606 VIAYLKSQYSVTVHDNLI 623 L + +T++D I Sbjct: 596 FSNSLMQEAGITLNDAAI 613 >gi|163751873|ref|ZP_02159087.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99] gi|161328223|gb|EDP99387.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99] Length = 621 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 121/637 (18%), Positives = 254/637 (39%), Gaps = 43/637 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+AS+ +AK LV++ F G+S L S S + +V +++ S+ ++ Sbjct: 1 MLEKIREASQGVIAKSILVLVIFSFAFSGVSSYLGS-STEAAAATVNGEEISESALEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q++G + + A + + +L+ LV+ LDQ ++GL ++ Sbjct: 60 QSERARLEQQLGEMFQALAADDTYLASVKQSVLERLVAEKLLDQSATELGLRVSDQQIKN 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D +F +D +++ L + G + + ++R +V VG Sbjct: 120 AIMTEPAFQ-TDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + Y +++ A + ++ +F+ + +PE + YI Sbjct: 179 EISYLAGIQGQTRDIRYHIVDASPFVADVEVTDEQAQSFFDANLAQFMSPETLSLEYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 + + + +++ E QA Y++NK++Y E R ++ ++ +A+ + L Sbjct: 239 NATDMANDVTVTDAEAQAYYDENKQQYLKAEKRLAAHILINLGDDESASKAKAEAIYAKL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + G F QLA+ + + G + ++ + +++ D ++SL+K G ++ V+ SFG Sbjct: 299 QAGDDFAQLAKTESEDTFSGEQGGQLDWFEQGVMELAFDDVLYSLSK-GSYSTVVKTSFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 Y I + +I+P F +VK I Q++ A + + L + ++ E + Sbjct: 358 YHIIKLLDIQPEVEAPFVDVKDKIIAQLKDKAAVDTYYGLQQTLADVTYEVPDTLSEAAS 417 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYM 464 + + P+ A +L F + + + M Sbjct: 418 ELGVEVMTSPVFTRT-------NAPAPFDNSDVLKAAFSTNVLFDRMNSDVIEIDANHAM 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++IK A +V + + K + E KA L+ +F D Sbjct: 471 VIRIKSHTAAGTVDFTKVKAAIVERLKQEQANEVARDKAQTLM-------SSFND--AES 521 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVF-KVTNS 579 +T + R + + S+ F +V + NG + +V KV + Sbjct: 522 STEFVTKTNLGRFE---QGIDAAITSKAFQMAQPADSAVVDTVALANGYAVIVLDKVNAA 578 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + L+ ++ ++IA LK++ V Sbjct: 579 EGIDDNLLSALKQRLSAQYSEGDYRAMIAILKAKADV 615 >gi|299066735|emb|CBJ37929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum CMR15] Length = 637 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 103/637 (16%), Positives = 229/637 (35%), Gaps = 33/637 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + + L+++F F+ +G+ + GS VG + S +++ + Q +G Sbjct: 1 MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129 + + + + +LD ++ + L +V I + P D Sbjct: 61 AQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIEQIPAVTQLRKPD 120 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF D ++ LA +G+ ++ L + V L+D+ + Sbjct: 121 GKFDTDAYIKLLAAQGMTPDQFDARVRSELVLQQIPQSIVSSAFVPKSLVDRLIEARDQQ 180 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R V ++ A + + +++ ++ + PE + Y++F + K+I ++ Sbjct: 181 REVQALLFKPADYAAEVTADDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKK-GKKF 296 ++L+ Y++N ++ + E R ++ +K A+E ++K F Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKSPGSF 300 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA++ LG +K +++F+L + GD + V+ FG+ I Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISDVVESDFGFHIIK 359 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411 + +K S VK ++ ++R A++K E + S+ ++ + K+ Sbjct: 360 LEEVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSDSLKPVADKLKLQ 419 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIK 469 V G E++L +F D + +T V + + + + Sbjct: 420 IQTADPVTRVPNPALGNSPIN---NEKVLKALFVDDVTKNHRNTQAVQVGPTTLVAARAV 476 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 E PA +KL +V VK ++A ++ K + L K+ + G S Sbjct: 477 EYRPATVKKLADVREQVKAKVLAEQSA-ALAKKVGEEKLAALKQSNSAEGFGAAQTLSRQ 535 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 + PV + + Y + KV + Sbjct: 536 QAQG-----TPPAALVAILRADAAKLPVTIGVDLGAQGYALYRINKVLPPANVDPSRRAA 590 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 LTQ+ + ++ LK++ V ++ +++ Sbjct: 591 DAQQLTQVAGQADFNAYYEALKTRSKVKINGSVVDAA 627 >gi|85712920|ref|ZP_01043960.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] gi|85693226|gb|EAQ31184.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] Length = 624 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 111/643 (17%), Positives = 254/643 (39%), Gaps = 43/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+++ AK LV++ + F + G+ + + ++TV V ++ + ++ Sbjct: 1 MLERIREGSQSFTAKAVLVLIILTFALAGVGSYV-TGGATTTVAEVNDAEISQQALERAY 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++ G + +S+ + +L+ L+ L Q+ D G+ RV Sbjct: 60 ENERNRLQEQFGDMFEAVSSQPGYMQSVRANVLEQLIQQELLVQYARDHGMRVSAARVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI P F +F +D+++ L G +++ L R+ + Sbjct: 120 EIRDIPAFRSA-GQFDNDIYLMALRNAGYTPEQFATVLRDDLIRSQIAQAIGATEFALPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +R + RS YI+ N + + S++ + ++ + + ++ PE +++++ Sbjct: 179 EALALQRLQKQTRSGAYIIAENANFVDQVELSDSDIENYYNENQQQFQTPEQLKVAFVQL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKK 292 E +++S+DE++A Y+ + ++Y + E R V ++ + Q++A EA L Sbjct: 239 SKAELYNDVKVSDDEVKAYYQGSIDQYRTDEERRVAHILIESDSDNAQEKAQEALAQLND 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E L +K + D ++ F+L GD + ++ SFGY Sbjct: 299 GADFAAIAKEYSDDTFSAEQGGDLDWITKGSM-DEDFDNAAFALENVGDVSDIVETSFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407 I + +++P F++V +I +++ + +K E ++L E +++ + Sbjct: 358 HIIKLLDVRPGEVTPFEDVAGEIRQKLKAQQVDDKYFELQQKLAEVSFEQPDTLEPAADA 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + + E L R+F D + D + Sbjct: 418 -------INSTVRTSDLFTRQNAPTALSDEATLNRIFDPQLIDEKLNSDVIETADDRSLV 470 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ P + L++V + + K +A ++ ++G+ D Sbjct: 471 VRVLAHEPQAVKPLDDVREQIVSQLRVQKAQALALEQAEAWKKQWREQGEPDADYMT--- 527 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS-------GPVEMVKCFPIENGLSYVVFKVTN 578 ++ + +N+ + +FS P P + + KV Sbjct: 528 --------LDAIGMDNQNHPRAVLRALFSEAPSAGDAPALTTIEMPNGDAAVVALTKVNE 579 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + + + + + L ++ +L + I L Q S++ + Sbjct: 580 ADIEGEEANQQVVQQLQNRQSQLMLQAFIETLVEQASISRSQS 622 >gi|91783524|ref|YP_558730.1| putative PpiC-type peptidyl-prolyl cis- trans isomerase [Burkholderia xenovorans LB400] gi|91687478|gb|ABE30678.1| Putative PpiC-type peptidyl-prolyl cis- trans isomerase [Burkholderia xenovorans LB400] Length = 645 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 107/647 (16%), Positives = 236/647 (36%), Gaps = 47/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + LV + G+ S+ V SV K+ + + ++ Sbjct: 1 MLDFFRNHKRLMMFMLILV-IVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L Q +G + + + ++LD L+ L + + L A V + Sbjct: 60 RQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + LA +G+ +Y + ++ + G S Sbjct: 120 NDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V I + R A P++A L +++ +++++ P I Y++ Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 ++ + +L+ Y+ N Y ++ ++A+E Sbjct: 240 SPATLAASVQPGDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEE 299 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFT 339 +K F Q+A ++ G + LG F + I + D++F+L KK + + Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFAL-KKDEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D + + Sbjct: 359 GIVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVA 457 S+ + + K+ + K P L VF D + ++T A Sbjct: 419 KSLQPAADKYKLQLQTATVTPQ----PDPKLAPDSPLNNAKFLAAVFASDAVTAHNNTQA 474 Query: 458 LPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + G + ++ + A L+ V V++ V++ E + E+ K Sbjct: 475 IDVGGNTLIAARVIDYKAAAVPSLDAVKDAVRQKVIAVQSDEAAHKDGAAKLAEFEKS-- 532 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573 ++ ++ + N+ + +S ++ + + + + Y + Sbjct: 533 ---------KSTAGFSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAI 583 Query: 574 FKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++V G + + + Q+ + ++ + L+++ V Sbjct: 584 YRVNAVVAGAAVDPQRLAAAQQQIAQVDAQSEAEAYLQALRARSKVK 630 >gi|83593225|ref|YP_426977.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170] gi|83576139|gb|ABC22690.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170] Length = 632 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 136/634 (21%), Positives = 258/634 (40%), Gaps = 20/634 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ S++W+AK L +L + F +WG++D + G ++VG Q N + Sbjct: 1 MLDALRRGSKSWLAKSLLGLLVLSFGVWGVADYMVRGGGPKPAITVGGQSFGAGYVRNQF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++LG + ++ G +++E+A ++GL + + +V GA LD+ +GL A + I Sbjct: 61 SEDLGRLRRQ-GIELDAEQAIAMGLLGQTVQTIVQGAVLDESGRRLGLVASDDALRSAIQ 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 PLF G D +F D LA + E YID + + R +V V + ++D Sbjct: 120 NDPLFKGADGRFDRDRLSRILAANNLTEAGYIDLRRRDMIREALVEPVVSAVGVPGPIVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E R + + +PA P+ L + ++ D + APEY+ +L Sbjct: 180 VLAAHASERRVAQVLTVAKAALPAPTTKPTEEALEKVRQENLDRFTAPEYRTAKALLLTR 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 I ++++ + YE + +++ P R V Q +F ++++AD A ++ + Sbjct: 240 DAVAGSITVADEAIAQYYEAHGDEFVQPASRRVTQALFSSREQADSALVLIRSSSASLDE 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A + I +G+ + +P + + G G+ + V+ P Sbjct: 300 ASRKITGSGAIDMGNVTDSSLPAPL--PATIAAQDVGVVGEPAQSPLGWHLFLVTAATPE 357 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 T EV I + +A + + ++E+ LA G +DE++ + + + VD Sbjct: 358 TTKPLAEVAPQIRKTLASDQAVDSLYALSTQVEDLLAGGAGIDEVATQVGLPLL-AFSVD 416 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G G +P L +FG + + +G + +++ P R L Sbjct: 417 SQGNSQDGTPAKGLPSDGAFLKTLFGL--GEGEVSPMIDYEGGFFIQRLETITPRAPRPL 474 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMD 538 + V +V W+ + A L L +K G +F D+ AS L TT + R Sbjct: 475 DAVRAEVVALWQDQEQTATAGRLAEGL-LSRAKAGASFEDLAAAEPASRLSTTPPVTRDG 533 Query: 539 N-----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDK 589 E + +F+ V +G+S + +V + + E+ Sbjct: 534 RSDGAAEADPLPGALVQAMFAARQGDVVRADGSDGVS--LLRVLEIRQPSAEIAARERAS 591 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L Q + D+ + A L VTV ++ Sbjct: 592 VEQSLRQAYSADVANGYSAALGDTVGVTVDQGVV 625 >gi|253999166|ref|YP_003051229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. SIP3-4] gi|253985845|gb|ACT50702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. SIP3-4] Length = 632 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 113/647 (17%), Positives = 242/647 (37%), Gaps = 47/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S++W+AK+ L + +PF I G+ L S ++ V + + + NS Sbjct: 1 MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + + + + ILD L+ L+ + + I Sbjct: 61 QRLRNQLQAE--GKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHII 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ KFS + + L + ++ L + Sbjct: 119 TLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISK 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + R V + A + +++++KD ++ PE ++ ++LF + Sbjct: 178 QTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSN 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288 K+++S++E++ Y++N K+ E R ++ +K+A+E Sbjct: 238 NLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATTEAKQQAKKQAEEVLA 297 Query: 289 SLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +++ F LA++ K LGSF + + D++FS+ K G+ + ++ Sbjct: 298 QVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKP-FEDAVFSM-KPGEISNLVE 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FGY I ++ I + F K I ++ KA E + + TS+ Sbjct: 356 SEFGYHIIKLTEIT-GQSQGFDAAKPQIKAELLYQKAIALFAEQAESFNNMVYEQSTSLK 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460 ++ + + A + A ++L+ VF ++ K +T V + Sbjct: 415 PVADAFGLQVQHTDWISHA-------DGAKYFKSDKLMNMVFAEEVLKDKRNTEAVEVSP 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + + ++ + PA R EEV ++ K A+ K + + + Sbjct: 468 NNLISARVVDYKPAAPRSYEEVKAGIEGVLKAELAAKLAIKKGEAALADLRQ-------- 519 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578 GK+ + I+R + + ++ F V + + ++ Y++ KV Sbjct: 520 GKSPQLDWIPPVTIDRSNAQG--LTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNG 577 Query: 579 SKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 P E L + + + + + LK + +TV+ L+ Sbjct: 578 VNTLPANEDADKASARELQAALASEYVAAYVKSLKDKSKITVNSRLL 624 >gi|94310820|ref|YP_584030.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] gi|93354672|gb|ABF08761.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] Length = 647 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 236/650 (36%), Gaps = 44/650 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + V++F F+ +G+ + S V + + N Sbjct: 1 MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAITVQEVDNVV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q +G + + +LD L+ + + + L ++ I Sbjct: 60 RDQSERMRQMLGNNYDPRMFEGPAARQAVLDQLIQQRVISEATQKKHLTVSDAQIAAAIQ 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D KF +V LA +G+ ++ LS + G Sbjct: 120 SIPAIAQLRTADGKFDEKAYVQLLAAQGMTPEQLDARMRFELSTQQLGGAIGTTAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 LLD+ + R V IV+ A P A L ++E + Y PE ++ Y++ Sbjct: 180 LLDRLIAIRDQQRDVQAIVIKPADFTAKVTPDAAALKAYYESHLAAYTMPEQAKVEYLVL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK--- 294 I+ D+L++ Y+ N +++ + E R ++ K+ EA + K K Sbjct: 240 SGDALAASQTITPDQLKSYYDSNIQRFHTDEQRRASHILIAAPKDGKEADRKAAKEKAEK 299 Query: 295 ----------KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F +A++ + LG + + D++F+L K G + Sbjct: 300 LLEDLRKHPDTFADVAKKNSQDPGSAEKGGDLGFMGRGALVKP-FEDAMFAL-KDGQISD 357 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ +GY I ++ IKP+ T + V+ ++ +++ A++ E + Sbjct: 358 VVETDYGYHIIKLTGIKPAATEPLEAVRPELEIELKKQLAAKAYTEQADAFGNMVYEQSE 417 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ + + K+ V V GK+ E++L +F D +K +T A+ Sbjct: 418 SLKPAADKFKLTIQTADNVTRTPNPVLGKD--NPLNNEKVLKALFSDDAIKNKRNTEAVQ 475 Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G + + +I + PA RK EEV V++ + + AE K+G+ Sbjct: 476 VGPTTLVSARIVDYRPAAARKFEEVEALVRQAYVAQQAAELAR-----------KDGEAR 524 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 D K G++ + + + + + + + Y +++ Sbjct: 525 LDALKKSGSADGFGSMVTVSRAKADGVSPKAVDSIMRADASKLPSLVGVDLGADGYAIYR 584 Query: 576 VTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + P +++ L QM + L + LK+ V + Sbjct: 585 IAKVGTPPQANANQREADAQQLGQMAGQTELAAFYDVLKAGAKVKILHPA 634 >gi|332701510|ref|ZP_08421598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio africanus str. Walvis Bay] gi|332551659|gb|EGJ48703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio africanus str. Walvis Bay] Length = 631 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 121/638 (18%), Positives = 239/638 (37%), Gaps = 34/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ +R+W KI ++ + F+ WG+ F S V V V + + + Sbjct: 1 MLDPIRQNARSWGVKIVFGIIIIVFVFWGVGS--FRNQNGSVVGYVNDTPVNVTEYRQAL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + +++E + +GL +++ +V + Q +D G+ V I Sbjct: 59 ERATEQLRSRFPD-LDAEMLKQLGLRRQVFSQIVDAELVRQKAKDTGMVVSDEEVREIIR 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F F ++++ L G+ E Y L + + + S Sbjct: 118 STPAFQSDRGGFDYELYRRLLRANGLTEVSYEAGMRTELLLDKMRQVATLPAKASEQEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F + V Y + A A PS + ++E+ K + P RISY+LF Sbjct: 178 DHFAFARDTAVVRYALFPLEDFTAQASPSEEEIAGYYEQNKARFTLPAQARISYLLFSAE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 + + ++ +E++ YE + +K+ E ++ K+A ++ + Sbjct: 238 QMARPEQVPAEEVRQYYEAHADKFQRQEEVRASHILVKVAKDAPQEEVDTAKAKIEDIRK 297 Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + F A++ + LG F + + + + F+L K G + + Sbjct: 298 KITGSLSFADAAKKFSEGPSGPAGGDLGWFGRGRMV-PTFEQAAFAL-KPGQVSAPVRTE 355 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG+ I + + + EV+ DI ++ A+ V + E A G S+ EI+ Sbjct: 356 FGWHIIKLEERREPGQIPLAEVESDIRAELARDTAASLVGDALDEATELAAAGQSLAEIA 415 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + +V D +G + A I ++ +F D D V+ +G Y+ Sbjct: 416 KSLHMVPRD------SGMFSESAGPAGIGLNDEAKRVIFSLADGELTDTPVSSGNG-YIL 468 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + S P + L+EV ++ K K E +KA L + + + Sbjct: 469 AEKAGSKPESVKPLDEVRVQIETLLKRDKALELSKAKAQALAKQLADPAAREQAAASL-- 526 Query: 526 ASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 L T+ +R + D F + + V K+ P Sbjct: 527 PELKTSEPFDRKGTVPDLGANQDLAKDAFVAKSGEWLPGAYSSPKGWYVAKLDALIPAPE 586 Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 E KD +++ LTQ ++L + I L+S+ + + Sbjct: 587 SEWQSQKDMWVAALTQSREQELYQAFIESLRSEAKIEI 624 >gi|91775766|ref|YP_545522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] gi|91709753|gb|ABE49681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] Length = 626 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 115/647 (17%), Positives = 244/647 (37%), Gaps = 46/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S+ W+AK+ L + +PF + G+ L S V V + + + N+ Sbjct: 1 MLEAIRNRSKGWLAKVILAAITIPFALVGVDSYLRDAGSSVAVAKVDGESITVQEYSNAL 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + V+ L + ++D+LV G L ++ ++ I Sbjct: 61 QNLRNRLQSE--GKVDQAVIDGPELKQAVIDHLVEGRLLANEVKRAKFVVSDEQLSHYIM 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + FH +D +FS ++ LA ++ + L N + + Sbjct: 119 QEESFH-QDGQFSQALYDQFLAERRRTPSQFENEVRTDLLTMQAREGLSALAFVPNGVAN 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 A + ++R V + + + ++++++D ++ PE ++ ++L + Sbjct: 178 NAIKVAHQSREVSIAEFRTADYLSQVKVTEDEVNAYYKEHQDKFKVPEQVKLEFVLLSAN 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 +++ +E + Y +N ++ E R ++ +++A+E Sbjct: 238 ALIPSQQVTEEEAREYYAQNAAQFQGDEQRRASHILIGFGVSPTPETKQKAKEKAEEVLA 297 Query: 289 SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +KK ++F QLA ++ G LG F + D++FS+ K G + ++ Sbjct: 298 LVKKNPERFEQLAHQYSQDPGSKDKGGDLGLFGPGTMVKP-FEDAVFSM-KPGTISDLVE 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FGY I ++ I S SF++V+ I ++ KA + E + + S++ Sbjct: 356 TDFGYHIIKLTEIHGSGQ-SFEDVQGQIRAELMYQKALAQFSEQAENFSNMVYEQADSLE 414 Query: 403 EISRREKIVSIDLPLVDFA--GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 +++ + + A K K ++ + + +++L V + Sbjct: 415 PVAKEFGLQVQTSGWLSRADGAKFFKNDKLMNLVFSDEVLK-------DRRNTEAVEVSP 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + + ++ E PA R EEV ++ K K A K + E + GK Sbjct: 468 NNLISARVVEHKPAAARAFEEVKAGIEDFLKHEKAANLAREKGEAALAEL-RAGKA---- 522 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNS 579 SL T + +S F + + + + Y++ KV Sbjct: 523 -----VSLNWTEPVTVDRYNPNTLTELSVSTAFKADASKLPAYNGVADRNGYLIAKVHAV 577 Query: 580 KVGPVQEKDKF--ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 K E+D+ + L + + + I LK + VT++ L+ Sbjct: 578 KFAVESEEDQRAAKAQLQAALAAEYRRAYINSLKQKAKVTINTQLLD 624 >gi|254492046|ref|ZP_05105223.1| PPIC-type PPIASE domain protein [Methylophaga thiooxidans DMS010] gi|224462743|gb|EEF79015.1| PPIC-type PPIASE domain protein [Methylophaga thiooxydans DMS010] Length = 613 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 108/630 (17%), Positives = 237/630 (37%), Gaps = 37/630 (5%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + + ++ +PF +WG++ L S V V +++ + S +Q + +G Sbjct: 1 WLIVGLISIPFALWGVNSYLTGAS-DVVVAEVNGKEITQAELQQSLQQYRDQMRNMMGEQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + + + +LD L+ L E +G + + I +P F D +F Sbjct: 60 FDPAMFEGAMVKRNVLDGLIEQQLLRDANEKLGQRINDAEISQVIRTTPAFQR-DGEFDA 118 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + LAR G + Y L + + + Q R + R + Y Sbjct: 119 EYYNMVLARVGYSPASYEAQLRADLMSQQLTQNIETTALATEKDVRQTLRLQEQRREIAY 178 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 V+ + ++ + Q ++ ++ NY++PE +++YI V + ++ D+L+ Sbjct: 179 GVVPVQEYVEQVSVTDDEVQQLYDNHQSNYQSPEQLKLNYIELSVATISSTLTVTEDDLK 238 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEE----QGK 305 Y N+ ++ P+ R ++ Q + L+ G+ F LAEE G Sbjct: 239 QFYADNQSQFVGPQQRRASHILIEGDDNDAQTTIEAIATRLENGEDFSSLAEELSQDPGS 298 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + LG F ++ + D + ++ F+L GD + + FGY + +++IK F Sbjct: 299 ASQGGDLGFFERD-VMDPAFEEAAFALETIGDVSEPVKTEFGYHLIKLTDIKQPEGQEFS 357 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +V+ ++ R +A + ++L ++D + ++ G + Sbjct: 358 QVRDEVEKLYRRQQAESIFYDKAEQLANLSYENPDNLDVAADDLELQIKTTESFTRNGTE 417 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 + I +++++ FG D + + L D + + P+ + V Sbjct: 418 ------SGIASEQKVIAAAFGDDVLKNDLNSAVIELADDHLVVIHKNSYTPSTVLPFDSV 471 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 +++ K +E+ + VL+ K+G D+ L T + E+ Sbjct: 472 SPAIEQQLLFEKASEKAREH-GESVLKELKQGNQATDL-------LPTWQEAEFYGRESD 523 Query: 543 FFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVG-----PVQEKDKFISYL 594 + + F+ N +Y+V ++T G +++ L Sbjct: 524 NISMQILQRAFAMSKPESGSKFAGFTANNGNYIVIELTAVDEGKPADVEAEDQQALKQQL 583 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 TQ+ + + I L+ Q + + D +Q Sbjct: 584 TQVHANAEVQAFITSLREQADIEILDETLQ 613 >gi|292487473|ref|YP_003530345.1| putative protease maturation protein [Erwinia amylovora CFBP1430] gi|292898715|ref|YP_003538084.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC 49946] gi|291198563|emb|CBJ45671.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC 49946] gi|291552892|emb|CBA19937.1| putative protease maturation protein [Erwinia amylovora CFBP1430] Length = 623 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 122/640 (19%), Positives = 251/640 (39%), Gaps = 32/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS KI L ++ + F++ G+ L SG V Q++ + F ++ Sbjct: 1 MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQFERAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + + ++ L L+ L Q+ +DIGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KF + ++S + G +Y + K L+ ++ G Sbjct: 120 AIFTQPAFQTA-GKFDNAKYISIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R V + +N + A + + + ++++++ + + E R+SYI Sbjct: 179 EADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S ++Q+ YEK++ Y P+ + + EA LKKG F Sbjct: 239 DAATM--QQPVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+E+ + +G E PD +L +KG + VI S G+++A + Sbjct: 297 RLAKEKSADPISARNGGDMGWLEPETTPD---ELKRAALKEKGQLSGVITSSVGFIVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + +P + EV DIAN+++ KA + +++ + A + ++ E+ + Sbjct: 354 DDTQPEKVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + G D E+ ++ + + G++ + V DG +V +I E Sbjct: 412 KAVETGWFGHDNIPAELKFKAVQDAIFNGALLGENAAPGSNSDVITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + K K ++ ++A++L+ E K GK D K Sbjct: 472 KPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQ 585 + R + FS P+ + + V+ + + G P Sbjct: 530 QTLTRTGQD------ALSQAAFSLPLPSQGKSSYGISEDAQGNVVLIALDKVQKGEMPQA 583 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K + +TQ + ++++ L+ + + + Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 623 >gi|241663130|ref|YP_002981490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12D] gi|240865157|gb|ACS62818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12D] Length = 646 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 95/652 (14%), Positives = 238/652 (36%), Gaps = 44/652 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + L+++F F+ +G+ + S V + + + Sbjct: 1 MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + + + +LD ++ L + L + ++ I Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTIL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D F + +V L+ + + ++ + LS+ + V Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+D+ + + R V ++ A + + + +++ ++ + PE + Y++F Sbjct: 180 LVDRLIQVRDQQREVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285 E K+I ++ ++++ Y++N ++ + E R ++ +A+E Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299 Query: 286 AFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F LA++ LG K +++F+L + GD + Sbjct: 300 VLAEVRKNPASFADLAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISD 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I + +K + VK ++ ++R A++K E + Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ + K+ V + +++L +F D + +T A+ Sbjct: 419 SLKPVADKLKLQIQTADNVTRTPSPAQSGSPIG---NDKVLKALFADDVIKNHRNTAAIQ 475 Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G + + + E PA +KL +V VK + A ++ KA + L K+ + Sbjct: 476 VGPTTLVAARAAEYRPATVKKLADVREQVKAKVIAEQAA-ALAKKAGEEKLAAVKQSNSA 534 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 G ++R + ++ + + + Y +++ Sbjct: 535 DGFGA--------VQTVSRQQAQGT--PPAALTAILRADATKLPTTIGVDLGAQGYALYR 584 Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + L Q + ++ LK++ V ++ + + Sbjct: 585 INKVLPPANVDETRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 636 >gi|88810611|ref|ZP_01125868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis Nb-231] gi|88792241|gb|EAR23351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis Nb-231] Length = 645 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 110/650 (16%), Positives = 252/650 (38%), Gaps = 38/650 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ VA I + +L +PF +G+ + F+ + TV +V + + + Sbjct: 1 MLQTIRDRAQGIVAYIIVGLLIIPFAFFGVYNY-FTGDSNPTVATVNGIDITRAELDAAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + + +G N L ++LD LV A L FI G + I Sbjct: 60 QRQQSQLRELLGDQYNPALFDESHLRPQVLDRLVDQAVLLYFIRSQGFRVTDESLRSFIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D +FS + + + L + G + +Y + + VG + + Sbjct: 120 SQPYF-LADGQFSKERYRAVLRQSGYSTDQYEAQLRQQQLLRQLELGIVGTAVATKHEMA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++R + ++ +++ + + Q++ +K + P ++SYI + Sbjct: 179 RFVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIELSEN 238 Query: 241 EKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEA------------DEAF 287 ++E+ + +Q YE+ K+ ++ P+ R V ++ K+A + Sbjct: 239 ALADQLELDDKAVQRFYEEFKDSRFTVPDARRVRHILIKLPKDASQHQIEVARGQIEALR 298 Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + + +G F +LA+ Q + + LG + + ++ ++ F L G+ + I Sbjct: 299 ERIVQGASFAELAQRQSQDVGSARQSGDLGFVRQGEMAK-AIDEAAFKLP-IGETSEPIR 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMD 402 FG+ + V+ + F EV+ I ++ ++ ++ + + S++ Sbjct: 357 SRFGWHLIEVTASRAGGVKPFSEVESQIRQELLKQQSGKRFYKLSNQAANYAYEHPDSLE 416 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 ++ + + + ++ + + +A+ P + F L+ + L D Sbjct: 417 PLAAKF---GLKIRQSNWFSQAGAKEGIASHPKVVKAAFSDEVLKQGLNSQS-IDLGDEH 472 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + +++ + PA R L EV V++ TV +E+ QL LE +K G++ + + Sbjct: 473 QVILRVDQHKPAAVRPLAEVRDRVREHLVTVGASEQAQKLGAQL-LEKAKSGQSLEALAE 531 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTN 578 + + R + + + F P + Y V +V Sbjct: 532 ANQHARYSAVGWVRRGSNK--VPAAIVERGFRLPHPSSDALALAGIELSDGGYGVVEVRG 589 Query: 579 SKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + G E+ + L ++ + L ++I L+ Q V + Sbjct: 590 VRDGALDKLDAAERTQVRQGLQRLNAESTLQAMIHVLRQQADVEFDRGQV 639 >gi|312171578|emb|CBX79836.1| putative protease maturation protein [Erwinia amylovora ATCC BAA-2158] Length = 623 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 121/640 (18%), Positives = 250/640 (39%), Gaps = 32/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R AS KI L ++ + F++ G+ L SG V Q++ + F ++ Sbjct: 1 MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQFERAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E Q +G + + ++ L L+ L Q+ +DIGL ++ Sbjct: 60 SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KF + ++ + G +Y + K L+ ++ G Sbjct: 120 AIFTQPAFQTA-GKFDNAKYIIIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D + R V + +N + A + + + ++++++ + + E R+SYI Sbjct: 179 EADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S ++Q+ YEK++ Y P+ + + EA LKKG F Sbjct: 239 DAATM--QQPVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+E+ + +G E PD +L +KG + VI S G+++A + Sbjct: 297 RLAKEKSADPISARNGGDMGWLEPETTPD---ELKRAALKEKGQLSGVITSSVGFIVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + +P + EV DIAN+++ KA + +++ + A + ++ E+ + Sbjct: 354 DDTQPEKVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSD--AASNDNESLASAEQAAGV 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 + G D E+ ++ + + G++ + V DG +V +I E Sbjct: 412 KAVETGWFGHDNIPAELKFKAVQDAIFNGALLGENAAPGSNSDVITVDGDRAFVLRISEH 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 P + L++V + K K ++ ++A++L+ E K GK D K Sbjct: 472 KPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAEL-KAGKG-DDALKAANLRFAAQ 529 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG--PVQ 585 + R + FS P+ + + V+ + + G P Sbjct: 530 QTLTRTGQD------ALSQAAFSLPLPSQGKSSYGISEDAQGNVVLIALDKVQKGEMPQA 583 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +K + +TQ + ++++ L+ + + + Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 623 >gi|253996686|ref|YP_003048750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] gi|253983365|gb|ACT48223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] Length = 632 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 111/647 (17%), Positives = 249/647 (38%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ WV K L + VPF ++G+ L ++ + V ++ ++ N+ Sbjct: 1 MLDGIRSVAKGWVGKAILAFITVPFALFGIDSYLSQAGNNAAIAKVDGSEISVQAYANAM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + + + + + +LD L++ L++ I+ + ++ I Sbjct: 61 QNLRSRMQAE--GKADQAQLDNPEVKAMVLDQLINEQLLEKEIQRANYKISDAQLATYIT 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F KD KFS +++ L + K++ L S D Sbjct: 119 AMPSFQ-KDGKFSQELYDELLQQNRYTPKKFEAEIRATLLAQQAQDGIAKLGFISTARAD 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + R V L + S + +++K+KD R PE +I ++L Sbjct: 178 KTLKLLNQKRVVTVSELKTKDYLDQVKVSPEEVKAYYDKHKDKLRDPEQVKIEFLLLSAS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 I++ + E++ Y++N K+ E R ++ + +A Sbjct: 238 SLVPGIKVDDAEVKRYYDENSAKFKGNEQRRASHILIGFGVNATPEQKQEAKNKAQALLD 297 Query: 289 SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++KK K F +LA ++ G + LGSF + + ++ F + K + + ++ Sbjct: 298 TIKKNPKSFEELAIKNSQDPGSATKGGDLGSFGRGAMVKP-FEEAAFKM-KVNEVSDLVE 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FGY I V+ I F+ +K I + KA + E + + + D Sbjct: 356 SEFGYHIIKVTEIT-GQGSDFESLKAQIKGDLIFQKAQAEFVEKAESFSNAVYEQS--DS 412 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461 ++ K+ L L + + +E A ++++ +F + V + Sbjct: 413 LAPVAKMFGGQLQLSGWTSR----EEAAKFFKNDKIVSLIFSPESIKEHRNTEAVEISPN 468 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + ++ E PA + + V ++ K ++ +K + + K R G Sbjct: 469 NLVSARVLEYKPAATKTFDAVKAGIEDLLKLEAASKLAIAKGEEAL-------KTLRAGG 521 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579 + +++R + + ++QVF V + + ++ L Y++ K+ Sbjct: 522 SVANLDWIPEVKVDRKNAQG--LTQLAMTQVFKTDVSKLPAYSGLADSKLGYLIVKIIAV 579 Query: 580 KVGPVQEKDKFISY---LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + + + L+Q++ + L + L+ + VTV+ L+ Sbjct: 580 DTESIADAESVKTAKGELSQVLVDEYLSAYKQSLREKAKVTVNQRLL 626 >gi|237746606|ref|ZP_04577086.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] gi|229377957|gb|EEO28048.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] Length = 647 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 119/646 (18%), Positives = 245/646 (37%), Gaps = 45/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR R I LV + F+ G+ G V V + + + N+ Sbjct: 1 MLDFIRSHKRLTQI-ILLVFIIPSFIFVGVEGYKRFGDG-DAVAKVNGKAITQQEWDNAQ 58 Query: 61 KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ Q+ G +S+ S +L NL++ L + L V Sbjct: 59 REQAERFRQRAAVQGQPFDSKWIESSQFKWAVLQNLINRRVLLATLNKEHLTVPEQVVLQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I P G D K + + LA +G+N + T+ ++ + Sbjct: 119 KIREIPGLIGPDGKLNEARYKEVLAAQGLNPDMHFALMTQDMAMQQIAAPIEFSAFEPKA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + + R V +V + + LT ++ ++ + PE+ + ++ Sbjct: 179 VVTRVWNLFEQERDVQRLVFDAGAYRNKVSVTEDDLTAFYRAHEAQFTIPEHADVEVVVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------ 285 D+ EK ++IS+ +LQ+ YE+N++++ PE R + ++ K A + Sbjct: 239 DMPTVEKNVKISDADLQSYYEQNRDRFSIPEERRAQHILIAVAKNASDSEKAEAKKKAEE 298 Query: 286 AFQSLKKGKK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 LK F +LA+ + G + + LG F++ + D++F + KKG+ + Sbjct: 299 LLAQLKADPSRFAELAKAHSQDPGSARNGGDLGFFTRGKMVKP-FNDAVFGM-KKGEISD 356 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 + FGY + V++IKP+ +VK + +++ + S+K E + + Sbjct: 357 PVQTDFGYHLIAVTDIKPAVAKPLSQVKDSVLQELKRQETSKKFAEMSETFSNMVYEKPD 416 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ K+ P + + + ++L +F D K +T V Sbjct: 417 SLKPVADALKLTVHTFPNLARDPAVAARQ--NPLLADPKILQAIFSDDAVKGKHNTEAVE 474 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + +I + PA E+V + VK K ++ A + L KEG Sbjct: 475 VSPQVLVAARIAKHYPAELTPFEKVKSVVKAQVTNEKAM-ALAKAAGEAELARLKEGGAP 533 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 L S R D ++ V V + + Y++++ Sbjct: 534 SGFSPGLLVSRQKITMAGRSD----------LAPVMKADVSKLPAYVGVEMAPNGYIIYR 583 Query: 576 VTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +T + ++ +T +M + L + + YLK + V + Sbjct: 584 ITRVVTPEKTDGKLREAMSRQMTNVMAQQDLAAYMNYLKQEAKVEI 629 >gi|94987556|ref|YP_595489.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis PHE/MN1-00] gi|94731805|emb|CAJ55168.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis PHE/MN1-00] Length = 629 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 123/643 (19%), Positives = 237/643 (36%), Gaps = 36/643 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR +++W KI ++ + F+ WG+ S VVSV Q + Sbjct: 1 MLDFIRSNAQSWGVKIAFGLIIIVFIFWGIG--TLSGGPEVEVVSVNGQSITIQELQKRC 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ I Q +++ + + + L+ + Q IGL + I Sbjct: 59 EEIEQNIRQNFP-TISAAEINTFRIKQLATQQLILETLVLQEANRIGLIITPIELRKTIE 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH + KF +++ L + L + G S Sbjct: 118 SFPAFHNTEGKFDPAIYLQFLKERNDTPGHFESQIRTNLLINKIQQEITAGAYISPTEAY 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R++ Y++ + S + +++ + + ++ P + Y+L Sbjct: 178 DVYMYESATRTIQYLLFPTEDYLNKVNISADEVAKFYNESSEQFKTPTELNLEYLLITPR 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 I + + Y+K+KE + SPE + +V Q++ ++A Sbjct: 238 SLANNQTIDDTTVSEYYQKHKEDFKSPEQIHAQHIVVFAPENSEPEVLKKAQEKINQAAN 297 Query: 289 SLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 ++KKG+ F +A++ + + LG F+ E + AD FSL G+ + I Sbjct: 298 AIKKGEDFSSVAKKFSQDNVAQNGGDLGWFTYEQAV-PAFADVAFSLT-PGEISQPIQTP 355 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 GY I + + KP SF EV K I ++ KAS ++++ + ++ L S+ E Sbjct: 356 VGYHIIKLIDKKPEEIKSFDEVSKTIQQRLAEDKASIELQDVLENVQLALIENKSLTEAG 415 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + + I L KD+ + A P + L V P + + Y+ Sbjct: 416 KPYNLSPISTGLFPI--KDIASQLELAKPDELSKLTHV----SPGTILENPLITKTGYVI 469 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P + +E V + K K E ++ KA + L K + KN Sbjct: 470 IKVKDIKPESIKSIEVVENQISSLLKKQKANE-LAMKAAEEQLTILKNSSIPPAVAKN-- 526 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 L T+ I R + F P ++ V+ V P + Sbjct: 527 --LKTSPAIIRSATIENLKNPQLVPDTFKATPGSWLTTPYTVEQGVLIAYVSKEVVYPSK 584 Query: 586 E-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 E K+ F+S + + + + + L+ Q +T+ + I Sbjct: 585 EQWDNIKEAFMSAIVKSKREQMFKGFLTMLEKQAKITIKEEKI 627 >gi|221638406|ref|YP_002524668.1| YbaU [Rhodobacter sphaeroides KD131] gi|221159187|gb|ACM00167.1| YbaU [Rhodobacter sphaeroides KD131] Length = 621 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 130/618 (21%), Positives = 266/618 (43%), Gaps = 31/618 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V + ++ V +G+++ G STV SVG + + ++ + +QE+ + +I Sbjct: 20 VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 77 QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + L + ++E E+ + ++R+ + G GG ++D + E RS Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVDALHAYIAERRSF 196 Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + ++ A P++A L W+E + ++ APE KRI+Y + + Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPTDEA 256 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG S++ + AD++F+L + G + G + V+ + + SF+EV+ D+ Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETSFEEVRDDL 373 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + + A + +++++ LA G ++++++ + + D+ G Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSDISG---- 429 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 ++ D P T+ L DG + +++ E + + + EEV DV + Sbjct: 430 -YEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVAEAAH 484 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + ++++A ++ + ++EG + G + + R D + + Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605 F + + V ++ + + K + + Q +++D L Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQALSQDALAL 595 Query: 606 VIAYLKSQYSVTVHDNLI 623 + L + +T++D I Sbjct: 596 FSSSLMQEAGITLNDAAI 613 >gi|332557437|ref|ZP_08411759.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides WS8N] gi|332275149|gb|EGJ20464.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides WS8N] Length = 621 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 127/618 (20%), Positives = 265/618 (42%), Gaps = 31/618 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V + ++ V +G+++ G STV SVG + + ++ + +QE+ + +I Sbjct: 20 VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 77 QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + L + ++E E+ + ++R+ + G GG +++ + E RS Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSF 196 Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + ++ A P++A L W+E + ++ APE KRI+Y + + Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEA 256 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG S++ + AD++F+L + G + G + V+ + + F+EV+ D+ Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPFEEVRDDL 373 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + + A + +++++ LA G ++++++ + + D +A Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD-----IA 428 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 ++ D P T+ L DG + +++ E + + + +EV DV + + Sbjct: 429 GYEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVAPQLKPFDEVRDDVAEAAR 484 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + ++++A ++ + ++EG + G + + R D + + Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605 F + + V ++ + + K + + Q +++D L Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQALSQDALAL 595 Query: 606 VIAYLKSQYSVTVHDNLI 623 L + +T++D I Sbjct: 596 FSNSLMQEAGITLNDAAI 613 >gi|77462552|ref|YP_352056.1| peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1] gi|4185543|gb|AAD09115.1| YbaU [Rhodobacter sphaeroides] gi|77386970|gb|ABA78155.1| possible peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1] Length = 621 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 128/618 (20%), Positives = 265/618 (42%), Gaps = 31/618 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V + ++ V +G+++ G STV SVG + + ++ + +QE+ + +I Sbjct: 20 VFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMRALGAQIN 76 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 V E A++ GLD+++ LV+ A L + IGL RV EI + FHG +F Sbjct: 77 QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAFHGPSGQF 136 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + L + ++E E+ + ++R+ + G GG +++ + E RS Sbjct: 137 DRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAYIAERRSF 196 Query: 193 DYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + ++ A P++A L W+E + ++ APE KRI+Y + + Sbjct: 197 GLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAATLPADEA 256 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G L+DI Sbjct: 257 ALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERGLELADID 316 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG S++ + AD++F+L + G + G + V+ + + F+EV+ D+ Sbjct: 317 LGDASRDALGGA--ADAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPFEEVRDDL 373 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + + A + +++++ LA G ++++++ + + D +A Sbjct: 374 LTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMEIATVDYAPGLDSD-----IA 428 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 ++ D P T+ L DG + +++ E + + + EEV DV + + Sbjct: 429 GYEAFRTAADKLQKDDFP----ETILLNDGGLLAMRLDEVVAPKLKPFEEVRDDVAEAAR 484 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + ++++A ++ + ++EG + G + + R D + + Sbjct: 485 KDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTR-DGFVEGVPETLVPA 537 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDS 605 F + + V ++ + + K + + Q +++D L Sbjct: 538 AFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAARALKASLSAQIEQALSQDALAL 595 Query: 606 VIAYLKSQYSVTVHDNLI 623 L + +T++D I Sbjct: 596 FSNSLMQEAGITLNDAAI 613 >gi|126737880|ref|ZP_01753610.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6] gi|126721273|gb|EBA17977.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6] Length = 613 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 138/631 (21%), Positives = 262/631 (41%), Gaps = 32/631 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +++ S+T+V I + +L V +G + SVS V VG ++V + Sbjct: 1 MAAGMKQLSKTFV-WILMGMLIVGLAGFGAVNFSGSVSS---VALVGDEEVSVEEYFREL 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + Q+ G VV + + GLD+ +L L+S A LD + +G+ + E+ Sbjct: 57 QREQRSLQQQTGQVVTLAQMTAFGLDRAVLGRLISLAALDNEVNSLGISIGDENLLDELT 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F G F + + L + E E+ K +RT V G + + L D Sbjct: 117 QIPSFQGPSGNFDREAYRFALQNANLTEAEFEADLRKEAARTLVQGAIISNAEMPSTLAD 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ RS Y++L P +A L ++E + +R PE K+I+Y Sbjct: 177 TLTKYIGARRSFSYVLLEPAQFSLIQIVPDDAELKSFYEANPEAFRLPETKQITYARLSP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 IE+ + L+A YE+ K++Y PE R VE+LVF +Q AD A L+ G F + Sbjct: 237 DMILDGIEVDAEALKALYEERKDQYQVPERRLVERLVFSDQAAADRATADLQAGTVTFEE 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L +G L DI +G +KE + + A G + + G I ++ Sbjct: 297 LVGNRGLDLQDIDMGDVTKEDLGAAAEGVFA---AAVGSVSSPLPSDLGPAIFRINGQLD 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + SF+ + ++ ++ +A +++ + +++ LA G +++E+ + L Sbjct: 354 ARITSFEAAEAELRQELAADRARRVIEQQAESIDDILAGGATLEELKDEADMEVATLGWT 413 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + G +AA V +D P L DGS +++ E +P R Sbjct: 414 -----GIPGDGIAAYEGFRTAADAVTLEDFP----AVEFLGDGSIFALRLDEVLPERPEP 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 + V W + A+ ++++A +++ G D+ L T ++R Sbjct: 465 FDAAKEKVLAAWDADRQAKAITARAGEILTATKNAGAFPDDLEVATEEGLTRTAYLDRT- 523 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISY 593 D ++Q+F+ VK E+ S VV ++ E ++ F + Sbjct: 524 ------PADMMNQIFTMTPGEVKIITGED--STVVVSLSEILPAEEGEEMALMREAFTAQ 575 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 L Q ++ L + ++ + + + + + Sbjct: 576 LDQALSNALFQAYVSDAQLRAAPRLDQQALN 606 >gi|300721987|ref|YP_003711267.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC 19061] gi|297628484|emb|CBJ89049.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins [Xenorhabdus nematophila ATCC 19061] Length = 626 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 117/639 (18%), Positives = 252/639 (39%), Gaps = 34/639 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ V KI L ++ + FL+ G++ L S SGS V Q + + ++ Sbjct: 1 MMDNLRTAANGPVLKIVLALIILTFLLTGVTGYLSSESGS-YAAKVNGQTISRAELEQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 QE ++ +++G + S+ + + ++ LD L++ ++Q+ +GL A +V Sbjct: 60 LQEKDVLQERLGDQFSALLSDEQQVRQIRRQSLDRLINTVLIEQYANKLGLSASDDQVAE 119 Query: 118 EIARSPLFHGKDNKFSHDVFV---SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 EI + D KF + + + LAR I+ + K L ++ + +G Sbjct: 120 EIRNTSFLQ-TDGKFDNKKYQDYLNMLARSNISPDHFAAQVRKELINRQLMQVLMGSEIA 178 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + Q + R+V + L + + A ++ L ++ + PE +ISY Sbjct: 179 LPTEIKQEVMLILQERTVRFATLELKSLEAQQKVTDEELKNYYSANSKRFTVPEKVKISY 238 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I D ++ K I +S +++ Y+ N KY +PE + + + A L KG Sbjct: 239 IKMDAVDELKNITVSEADIEKYYKNNLSKYTTPEQKKYSFIQLVSDSAAKSVLDELNKGA 298 Query: 295 KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F QLA E+ LG + +P+ +L +KG + ++ S Y I Sbjct: 299 DFSQLAAEKSTDKFSAQKGGDLGWMEESSLPN---ELKSANLTQKGQLSEIVKLSNAYAI 355 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + +IKP ++ +I ++ K+ + + +++ + A + ++ EK Sbjct: 356 FRLDDIKPQVIKPLADIHAEIDKIVKQEKSVDAFYDLQRKVSD--AAANDNESLAAAEKA 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQI 468 D+ +D ++ + + D + +++ V++ Sbjct: 414 AGYAAVNTDWFDRDHIPADINFSQVVQAIFSGNLIDDKGATGTNSDVISVEGDRAFIVRV 473 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + P + + +++ + K K +++ ++ +L++ KEGK K G Sbjct: 474 NDVKPETVQPFGQAKSEMAELLKRQKAEKQLQVESEKLLVAL-KEGKG-EQALKAAGIQF 531 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 I R ++ F+ P V+ ++ + V + KV P Sbjct: 532 GQPTVIKRFPQTHQ-----ATDIAFTLPHPKEGKVQYGLAQDEIGNAVL-IQLDKVIPGS 585 Query: 586 EKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHD 620 D+ I + +L+S++ L+ + + Sbjct: 586 ISDEQIKQYQEGYQYQTGNMMLESLMINLRDEADIKFGQ 624 >gi|323700040|ref|ZP_08111952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp. ND132] gi|323459972|gb|EGB15837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio desulfuricans ND132] Length = 633 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 116/640 (18%), Positives = 237/640 (37%), Gaps = 36/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE++R+ + W+ KI ++ + F+ +G+S + SG TV +V Q + + + Sbjct: 1 MLEVMRENASGWIVKILFAIIIIVFVFAFGMSG--LNSSGDPTVATVNGQAITRAEYEAM 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ + + + + RS + +L L+S L +G+ A V I Sbjct: 59 YQRAAENLR-RTNPDLPPAQTRSPEFKQMVLGELISQKLLLGEAAKLGIRASDKEVAAGI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F + F + + L + ++ ++Y + L+ V S Sbjct: 118 GAVDAFKDANGNFDQQRYQTALRDIRMTPGDFEENYRRDLTMEKVKDAVGVPADLSESQA 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Q + E ++DYI + + +++ +D ++ P + + F Sbjct: 178 RQIFDWLGETAAIDYIEVLPTDFRNEIKIGETEIEAYYQANQDRFQIPAQVTLRTLAFTP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEA----DEAF 287 K +++DE++A Y NK+ P ++ +Q++A D+ + Sbjct: 238 ASLAKFQTVTDDEIKAYYAANKDSLEEPAQVHARHILVAVKESDSQADQEKAKARIDKLY 297 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q K G F +LA++ + + LG F K + + F+L K G + + Sbjct: 298 QEAKAGADFAELAKKNSDGPSAPNGGDLGWFGKGAMI-PDFEKAAFALNKGG-VSEPVRT 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ I V + K T +F E K +I ++ KAS++ + + + L G S+ +I Sbjct: 356 QFGWHIIMVEDKKEGTTKTFDEAKDEIKARLAEEKASDQANDLLDQATDRLVSGMSLTDI 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + + ++ + A V G + VA+ +G YM Sbjct: 416 ASELGLETVTTDPMPAQFLG------QAFGMNADAAKAVSGLTPGQAYKSPVAV-NGGYM 468 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V+ E I L V + + K AE +A ++ + G + K Sbjct: 469 LVEKVEDIAPSIMALNLVRQTIVNTLENQKGAELAGQEAEKIHAALT--GPDAEAAAKQY 526 Query: 525 GASLLTTNQINRMDNENKFF-GYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVG 582 A + T+ NR N + F+ K G VV ++ Sbjct: 527 AARIKTSRPFNRQGNIPELGQSEPLTKAAFNAEDNGWFKLVYTMPGGGAVVARLNKRIPA 586 Query: 583 P----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P ++K +++ Q ++ + + + L + + Sbjct: 587 PEKTWEEQKQFWLTQAGQNYRREAVAAFMDDLSKNAQIDI 626 >gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae SmR1] gi|300074334|gb|ADJ63733.1| peptidyl-prolyl cis-trans isomerase D protein [Herbaspirillum seropedicae SmR1] Length = 639 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 116/644 (18%), Positives = 243/644 (37%), Gaps = 45/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + IR + + + L+ +F F +GL ++ + V V Q + + + Sbjct: 1 MFDFIRTH-QRLMQFLLLLFIFPSFAFFGLEGY-SRLTDDNGVAKVAGQTITKEEWDAAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L + Q G +S+ S + ILDNL++ L + L + I Sbjct: 59 RQQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQSIL 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P D KF ++ + LA +G+ K Y + ++ + + + Sbjct: 119 QIPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQLNAAIQTTAFAPKTVAE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R+V + + S+ +L +++K + PE I Y++ D Sbjct: 179 NLSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDYYDKNSARFETPEQADIEYVVLDAA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287 + +++D+++A YE+NK+ Y + E R ++ +K+A Sbjct: 239 AVAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGLVA 298 Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q K +F +LA+ + G + + LG F K + D+ FSL K+G+ + + Sbjct: 299 QLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVKP-FEDAAFSL-KQGEISDPVQ 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMD 402 FGY I V+ IKP+ + VK +I ++++ A++K E + + G S+ Sbjct: 357 SDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAAKKYSEMADQFNNLVYENGDSLK 416 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALP 459 +S + K+ V G +PY DD + V Sbjct: 417 AVSDKLKLKIQTATGVTRTPNPAAGP----LPYNNAKFLTALFTDDVIKAKHNTEAVQTA 472 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + ++ P R +EV DV+K + + ++ KA Q L + Sbjct: 473 PNTLVAGRVTSYKPVTKRPFDEVKADVQKAVLAQQ-EQLLAVKAGQERLAQLQ------- 524 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577 K+ A ++R+ + + + V + + G+ Y +++++ Sbjct: 525 -AKDDAAGFSEAKVVSRVKADGWT--QEAFNAVMKADTAKLPAYVGAETPGMGYQIYRIS 581 Query: 578 NSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + + + +++ S + YL+ + + Sbjct: 582 KVEQPKTVDAARRQAEREQIASALSQQEALSYLDYLREKAKTKL 625 >gi|56479244|ref|YP_160833.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] gi|56315287|emb|CAI09932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] Length = 633 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 120/651 (18%), Positives = 268/651 (41%), Gaps = 46/651 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R R +A+I L +L VPF +GL S G + + +VG K+ + F + Sbjct: 1 MFDAVRNNKR--IAQIILALLIVPFAFFGLDSYFTSGPGGNEIATVGGSKISMNEFDQAL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q +G V+ S + + +++NLV+ L D GL ++ IA Sbjct: 59 RDQQDRLRQSMGGQVDRAMLESEAMRRSVVENLVNQRLLAMHAADSGLVVTQQQLQQVIA 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D +FS + + + + +G+ + + L V + + Sbjct: 119 TVPAFQ-EDGRFSLERYEAAVRAQGMTPAMFEARLGQDLRVQQVALAVGQSAFTAQASVQ 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R V + + A + + ++++ + + P R Y++FD + Sbjct: 178 RFLEAQLEERKVSELKFSPDAFLAQVELPDDAAKKYYDANPERFERPARLRAEYLVFDEN 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------------PNQKEADEAF 287 K++ +S+DE++ YE N ++ PE R ++ ++K A Sbjct: 238 ALLKQVSVSDDEIRKFYEANTARFGQPEERNARHILIEAAADAPAEEVAKASEKAAALLA 297 Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q ++F +LA+ + G + LG F + + S D++FSL +KG + V+ Sbjct: 298 QVRANPERFAELAKAESQDPGSAARGGELGFFGRGAMVK-SFEDAVFSL-EKGQISDVVR 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FG+ I V +IKP+ F+EV+ +IA +++ AS ++ E + + D Sbjct: 356 SDFGFHIIQVVDIKPAKARPFEEVRDEIAEELKRQAASRRLAEQAEHFANLVYEQA--DS 413 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461 + + + +++ D+ ++ + E+LL +F + + + V + G Sbjct: 414 LQPAAQELGLEIRQTDWISRE---EGSIGGFKNEKLLNGLFSDEAVKNGRNVEAVEVSRG 470 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + ++++ A+ EEV ++K + + ++ ++ + +K G Sbjct: 471 TLVSARVRDFEAAQRLPFEEVKASIEKQLRAEEASKLAVARGEAALAALAK--------G 522 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNS 579 + + + R E I VF + + Y VF++ + Sbjct: 523 EQASGAWSEARVVRRGSPE---LAPAAIDAVFGAAESKLPAYAGVAMPEGGYSVFRIESV 579 Query: 580 KVGPVQEKDKFISYLTQM----MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + D + ++Q + + ++ +A L+ +Y V +++ +++ Sbjct: 580 TRPELAKDDPRLQAVSQQYQRLIAERDFNAFLASLRERYEVEINEAVLRVA 630 >gi|261346360|ref|ZP_05974004.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM 4541] gi|282565674|gb|EFB71209.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM 4541] Length = 622 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 104/633 (16%), Positives = 250/633 (39%), Gaps = 26/633 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R + + K+ L ++ + F++ G++ + S S+ V Q + ++ Sbjct: 1 MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVIGGS-SNDAAEVNGQPISREQLQQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE + + +G S L + L+NL++ ++Q+ ++ L A ++ Sbjct: 60 QQERQSLQEYLGDKFAEVASNDEYMKELRTQALNNLINTQLINQYANELNLSASDKQIEQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F D KF + + L+R IN + + L R + F G Sbjct: 120 AIFAMQIFQ-TDGKFDSEKYREILSRYNINADSFAAQIRQDLVRAQLGKSFTGTEFALPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V +L V A + L +++ ++++ +PE ++SY+ Sbjct: 179 EVKAYAELFMQQREVRTAMLPLAEVQAKQTVTEEELKAYYDANQNSFISPEQVQVSYVEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K ++++E+ Y++N + + E + + ++K+A LK G F Sbjct: 239 DAASMPK-ATVNDEEITTYYQQNLKNFTKAEQKLYSMIQVASEKDAQALETELKNGADFA 297 Query: 298 QLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E+ S +G P ++ +L +KG + I YV+ + Sbjct: 298 ALAAEKSTDKFSASNKGVIGWMEAASTPSEIIS---ANLTEKGQVSAPIKVQDNYVLFRL 354 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +I P EVK I + K+ ++ + +++ E A + ++ E + + Sbjct: 355 DDITPEAIKPLDEVKDSIKTSLTQDKSIKQFYDLQQKVSE--AATNDNESLASVESVSGL 412 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471 + ++ + + + ++ R+ K+ + V +G V++ + Sbjct: 413 KVSNTEWFDRKNPPEALNFPKVINEIFSERLIDKNGATGINSDVINVEGDRAFVVRVTQY 472 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 ++V +++ K K ++ + ++L+ E K GK + K G + Sbjct: 473 KAEMTEPFDQVKSEIATLVKRQKAFTQLKADGDKLITEL-KAGKGDEAL-KAAGTQFGSV 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGP--VQEK 587 ++ + ++ + P++ + I + +V ++ +G +E Sbjct: 531 QTVSFIAPATDVTD---VAMKMTPPIDGKPTYSIAYDKQDNLLVVQLDKVTLGQPTAEEL 587 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + S MM+ + +S++ L++ + + + Sbjct: 588 SQLGSQYQAMMSSVVNESLMQNLRANAKIEIQN 620 >gi|283851044|ref|ZP_06368329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp. FW1012B] gi|283573690|gb|EFC21665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp. FW1012B] Length = 650 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 118/650 (18%), Positives = 252/650 (38%), Gaps = 44/650 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W KI ++ + F+ WG+ F ++ + ++ Q V + ++ Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FQGDKATVLATIDGQPVLIKDYEKAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L ++ K V + + G ++ N+V+ L+ +G+ + EIA Sbjct: 59 QENLRLVKNK-NPNVTDKDLQDGGFRWQVFSNMVTTRLLEDQAAKLGIAVSPEELRAEIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F + +F + + L + E+ + + L + ++ Sbjct: 118 KIPAFQNESKQFDAKRYENLLQANDVTPGEFEADFRQNLLLEKLAAYVSLPAAVTDTEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E ++ YI P+ + ++E KD + P RI Y+ F Sbjct: 178 SIFDFMREQATIHYIPFKTEDFTKGVAPTADQIKAYYEARKDQFATPAQIRIDYVEFTPK 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 K E+++ +++ Y+ N++KY PE V + +A + Sbjct: 238 ALAKPAEVTDADIETAYKANQKKYAKPEQVRVRHFLVMLPADAPKEAVDAATAKLKDLAA 297 Query: 289 SLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 LK G F L + G+ + + GS KE+ + + FSL KK + Sbjct: 298 KLKAGADFASLLPKNPNNPEGLIGEDWAWLPKGSLPKEF---GAFEEKAFSL-KKDEIGE 353 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + + G + + + + EVK +I + + KA++K+ + ++E +A G Sbjct: 354 PVRTALGLHLIQAGEHQAAGEKTLAEVKDEIRSDLAEQKAADKLTKALDTIQEKVAAGED 413 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + + + EK+ + DF KD A + EQ L +F D ++ D Sbjct: 414 LKKAAAEEKL---ETKTTDFFAKDT---PPAELGLSEQALAALFTFKQGGGADQPLSTQD 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G ++ ++ E+ PA +E V +K + + ++A+ V + + + + Sbjct: 468 G-FLLARVAETKPAGFEPMEAVTDVIKDRLVAEEAQKRARAQADT-VAKAMETEEGKAKV 525 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VF--SGPVEMVKCFPIENGLSYVVFKVT 577 + + + R + Q F +GP + + +G YV+ + Sbjct: 526 LADYKDKIQISQPFTRQGFIPALGMAPVLVQTAFEATGPGWFKAAYAVSDG--YVLAGLE 583 Query: 578 NSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 EKD+++S L Q +L + + ++ V + ++ I Sbjct: 584 KRMPAETALWDKEKDRWMSTLAQSKQSELFKAYLQTVQQTAKVEILNDAI 633 >gi|114330677|ref|YP_746899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] gi|114307691|gb|ABI58934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] Length = 630 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 109/645 (16%), Positives = 266/645 (41%), Gaps = 45/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + + + + +I L + +PFL WGL + +S V SV +++ + + Sbjct: 1 MFDFV--NQKKTIVQIVLFIALLPFLFWGLESY-QGMGSASDVASVDGEEISRQEYEQAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G ++ S + +L+NL+ L +GL R+ EI Sbjct: 58 RNQQENLRNMLGENFDASLLDSPQMRMAVLENLIQQKLLRHEAGRVGLAVLDSRLTAEIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 LFH +D+KFS++ + L R+G++ + L R ++ G + S + D Sbjct: 118 NIALFH-EDDKFSYERYRELLQRQGMSPAMFEARLAGDLMRQQLLEGITGSVIVSKTVAD 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++ + +N A+P A + +++ ++ ++ PE RI Y++ + Sbjct: 177 RIASLSETKYEINRVTINPEQYINQAEPDEAAIQSYYDSHRQDFTLPERVRIEYVVLSLE 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 E K+ +IS++E++ ++++++++ E R ++ + +A++ + Sbjct: 237 ELAKQEQISDEEIKKYFDEHQDEFGRVEERRASHILLTVPVDATEEQKAAIKAKAEQILE 296 Query: 289 SLKKGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +K+ F +LA+E G + + LG F++ + + D+ F + + + + Sbjct: 297 QVKQDPDKFPELAKELSEDPGSAKAGGDLGFFARGLMVK-AFEDTAFEM-QLDEIRGPVE 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FG+ I ++ +K + F EVK+ I ++ KA+++ E + + + D Sbjct: 355 TPFGFHIIRLTAVKDANVAKFDEVKEGIRQTLQRQKAADRFGELSEDFSNIVYEQS--DT 412 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461 + ++ ++ + D+ ++ K V A E++L +F + + + Sbjct: 413 LQPVAQMFNLSVQQSDWIDRNSKEPSVIA---NERMLQAIFSEGAIRDHYNTEAIEVAPD 469 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 +++ ++ E PA + + V + + K A + Q + + Sbjct: 470 TFVSARVLEHRPASVQSIGLVKDKIIELLKQQIAAATAEEEGKQKLAKLQ---------A 520 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579 SL + + + + + +F VE + + + + ++ Sbjct: 521 GETDESLEWGEPVEISYTQKRGSDEEMLHALFQTDVEKLPAYTGVKTKKGGFDLIRINQV 580 Query: 580 KVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 KV + + I+ L Q+ ++ L++ +A L+ +Y V + Sbjct: 581 KVPAAESGSSQYTMLINQLQQVHGQEELNAYLAGLRQRYEVKIKP 625 >gi|255262468|ref|ZP_05341810.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp. R2A62] gi|255104803|gb|EET47477.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp. R2A62] Length = 622 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 124/625 (19%), Positives = 262/625 (41%), Gaps = 27/625 (4%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 R + + I + +LFV + +G + ++ SVG +++ ++ N QE+ Sbjct: 3 RSKTSNFFVWIVIGLLFVGLIGFGATGL---SGNIRSIGSVGDKELDLQTYANQLNQEIR 59 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + G V+ A+++GLD+ +L ++ LD +GL RV +I P F Sbjct: 60 AFEAQTGSSVSFPEAQTIGLDRAVLARVIGVRALDNEAAQVGLSVGDARVRAQILEIPSF 119 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 G +F D + L G+ E + + ++RT + G + G+ S+ + + Sbjct: 120 RGPSGEFDRDAYRFSLGNNGLTEATFETQLREEMARTVLQGAVLTGVEASDTYAETLSGY 179 Query: 186 YFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E+R ++ L+ + ++ L +++ ++ P KR++Y+ Sbjct: 180 IGESRDFTWVRLSQADLETELTAATDEQLLDYYQANPIDFTEPAKKRLTYVSLTPEMIVD 239 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +EI LQ Y + + PE R VE+LVF +Q++AD A L +G+ F L EE+ Sbjct: 240 TVEIDETALQDLYNTRLDTFVQPERRLVERLVFSSQEDADAAAARLTEGEITFDALVEER 299 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G +LSDI LG ++ + D D++F+ A+ GD + G + ++ + + + Sbjct: 300 GLALSDIDLGDLAQPELGDA--GDAVFA-AQTGDVVGPLPTDLGPALFRMNAVLSAQETT 356 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 +++ ++ ++ +A + + + +++ L G +++E++ ++V + + Sbjct: 357 YEQALPELREELATERARRIIDDASREIDDLLVGGATLEEVAAETEMVLGQIDWFAGSE- 415 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 + +A V D P DG +++ E+I A LE++ Sbjct: 416 ----EIIAGYDNFRAAANAVTSNDFP----DIERFEDGGLFALRLDETIDAELVPLEDIR 467 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 V W+T +T+ ++ +A L+ + EG+ +G + R D Sbjct: 468 GKVVAGWETQETSRLLNEQAQGLI-DQVNEGRTLVSLGVEANVE----TGMTRTDFIAGA 522 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLTQMMN 599 G + VF+ V + + V V + +E D Q + Sbjct: 523 PGQ-MLPSVFALDVGGSEILEAFGAVYLVRLDVIGAADTEGEEATARLDLLSQQAEQGIA 581 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQ 624 +DLLD+ ++++ + ++ + Sbjct: 582 QDLLDAYSRAVQAKAGIELNQAALN 606 >gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040] gi|99037265|gb|ABF63877.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040] Length = 611 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 141/627 (22%), Positives = 273/627 (43%), Gaps = 30/627 (4%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 ++K S+T+V I + +LFV +G A+ + T+ +VG V + + +QE Sbjct: 1 MKKLSKTFV-WILMGLLFVGLAGFG---AINVSGTTRTLATVGDATVSVDDYARALQQEQ 56 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 I + G + + ++G+D+ +L LV+ A LD + +IGL + EI R Sbjct: 57 RAIQAQSGQSIPLSQLIAMGVDRGVLSGLVATAALDNELTEIGLSVGDEVLLEEITRISA 116 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G D FS D + L G++E E+ +RT + G GG R +L + Sbjct: 117 FQGSDGSFSRDNYRFALDNAGLSEAEFEADMRSETARTLLQGAITGGTRMPAVLGETLTN 176 Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + RS Y+ L +VP P+ L ++E + +++ PE K I+Y+ Sbjct: 177 YIGARRSFSYVRLAEANVPLTAIAPTEDALKAYYETHIEDFTLPETKVITYVALRPDALV 236 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302 ++E+ L+ YE+ ++ PE R VEQLVFP++ A A L G F L + Sbjct: 237 DQVEVDETALRGLYEERDAEFNVPERRLVEQLVFPDEDAAQTAKAELDVGGTTFETLVAD 296 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + SLSDI +G + + + +++F+ A G + FG + V+ + + Sbjct: 297 RELSLSDIDMGDVAIGDLG--AAGEAVFA-ADVGAVVGPLPSDFGPALYRVNGVLEANFT 353 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 SF+E + ++ + +A ++ + L++ LA G ++++++ E + L +D+ Sbjct: 354 SFEEALPVLREELALDRARRLIESRAEGLDDALAGGATLEDLAEEEN--GVVLGQLDWTA 411 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 ++AA V +D P L DGS +++ E +P R E+ Sbjct: 412 NTTD--DIAAYDTFRNAAEAVTTEDFP----EVGYLEDGSLFALRLDEVLPPRPEPFEDA 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 T V + ++ + A+ ++++A Q+ F + G ++ + R ++ Sbjct: 466 RTAVSEAYEGDRIAKALAAQAEQIKTATEGNNGQFPE-----GREVIEQTGLTRTAYLDQ 520 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-----YLTQM 597 D ++QVF V V+ G VV ++ +F+S L Q Sbjct: 521 T-PVDLLNQVFEMEVGEVRVVSDAEGT--VVVRLDEILPPDDGNDMQFLSQALGDQLNQS 577 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ ++ + ++++ V+ + Sbjct: 578 LSNEIFQIYLQSVQTRARPQVNQQAVN 604 >gi|300691410|ref|YP_003752405.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum PSI07] gi|299078470|emb|CBJ51122.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia solanacearum PSI07] Length = 637 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 103/637 (16%), Positives = 231/637 (36%), Gaps = 33/637 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + + L+++F F+ +G+ + GS VG + S +++ + Q +G Sbjct: 1 MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129 + + + + +LD ++ + + L +V I + P D Sbjct: 61 AQYDPRQFEGSQMRRDVLDGIIQQRVMVNEASRVNLSVADSKVRETIEQIPAVAQLRKPD 120 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF D ++ LA +G+ +++ L + V L+D+ + Sbjct: 121 GKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSTAFVPKSLVDRLIEARDQQ 180 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R V ++L + + +++ ++ + PE + Y++F + K+I ++ Sbjct: 181 REVQALLLKPADYAGKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKK-GKKF 296 ++L+ Y++N ++ + E R ++ +K A+E ++K F Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKTPGNF 300 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA++ LG +K +++F+L + GD + V+ FG+ I Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISDVVESDFGFHIIK 359 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411 + +K S + VK ++ ++R A++K E + S+ ++ + K+ Sbjct: 360 LEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSDSLKPVADKLKLQ 419 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIK 469 V + + +++L +F D + +T V + + + + Sbjct: 420 VQTADNVT---RVPNPALANSPINNDKVLKALFADDVIKNHRNTQAVQVGPTTLVAARAV 476 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 E PA +KL +V VK ++A ++ KA + L K+ + G S Sbjct: 477 EHRPATVKKLADVREQVKAKVLAEQSA-VLAKKAGEEKLAAVKQSNSAEGFGAAQTVSRQ 535 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 + + PV + Y + KV + Sbjct: 536 QAQGM-----PPVALAAILRADAVKLPVTIGVDLGARGYALYRINKVLPPANVDPARRAA 590 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L Q + ++ LK++ V V+ +I Sbjct: 591 DAQQLAQAAGQADFNAYYEALKARSKVKVNSAVIDAA 627 >gi|114777815|ref|ZP_01452746.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans PV-1] gi|114551806|gb|EAU54346.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans PV-1] Length = 636 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 111/648 (17%), Positives = 253/648 (39%), Gaps = 35/648 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +R ++ W+AKI L + + F++WG+ D + + +V + + + F ++ Sbjct: 1 MLESMRSHAQGWIAKIILGGIALSFVLWGVGDYFLG-GKTEPIATVNGKAIGGAEFYQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++L +G +S S+G+ + L L++ + + + L A V + Sbjct: 60 ERQLNAYRSMLGKQYSSALMDSLGVKETTLQTLINRRIMLDTAQQLHLAAPASVVLATVH 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKE-YIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F F + + G + + Y + + + V + S + Sbjct: 120 SDPSFQSARG-FDVQRYHALTRNMGFSSAQDYENDLRLNIMVDALHKALVDSVHVSETEI 178 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ R + +V++ S+ W+E +K NY++P ++ + D Sbjct: 179 RDRFNHDYQQRVLAAVVVDPATQLNKVKVSDEQAKAWYEAHKQNYKSPLRINVNTVEIDP 238 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAF 287 + + +++ E++ +EK K ++ PE R + ++ + A + A Sbjct: 239 RKLAEDVQVDESEVRKAFEKRKAEFSRPEERKAQHILIKVAENAPEAVRAAARKKIEAAQ 298 Query: 288 QSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F +A+ E G + S LG F + + + ++F++ K G + ++ Sbjct: 299 ARIKAGEDFSAVAKAVSEDGTASSGGELGWFKQGSMV-TAFDQAVFAMDK-GQVSDIVET 356 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FGY + + +I+P+ S+ +VK I + +A+E+ + + L+E L + S+ Sbjct: 357 PFGYHLIRLEDIRPAHEASYDDVKDGIRQDLVKARAAEEAYKLSQDLDEALGMEDSLKAA 416 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + S+DL ++ + ++ + F P V DG Y+ Sbjct: 417 A-----TSLDLKTINSGLVSRDEALAVPVLSDPEIAAKAFST-LPGQAVEIVETSDGRYV 470 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V++ E + +V V D + A++ + A+++ GK+ ++ + Sbjct: 471 AVEVTERVEPDVLPYAKVARRVLTDARLDAAAKQAAVIADEI---RHSTGKSLDELAQQY 527 Query: 525 GASLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 G + + + + + Q FS + Y +V Sbjct: 528 GQAKYISKPVRSNGQGDNASWLSQALLKQAFSTKAGAWVDQSVHVPQGYAAVRVQQVIAA 587 Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 E KD+ + + + +A ++ +Y +T + + RY Sbjct: 588 SEAEYNKQKDQIAAEVRKAKGAARFARWMASVRDRYEITTNPKELDRY 635 >gi|221135500|ref|ZP_03561803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp. HTCC2999] Length = 626 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 101/635 (15%), Positives = 236/635 (37%), Gaps = 33/635 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE +R+ + A I + ++ + F+ G+ L S + V + + + ++ Sbjct: 1 MLERMREGLQGPWAMIIVALIVLSFVFAGVGSYLAS-PVDTAAAKVNGEDISARALDQAY 59 Query: 61 KQELGMISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + + G ++S A + IL+ LV+ ++Q + +GL ++ Sbjct: 60 QNERARLESQFGEGISSLFANPEYLANFRQGILERLVADKLVEQKAQALGLRVSDTQIKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F F++D +++ L + G ++ ++ +++ + + Sbjct: 120 TILSMPEFQ-VGGVFNNDRYLAVLRQAGFQVDDFRNYMRNTMTKEQLSRALLATDFVVPN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V Y + + + S+ +T +++ D Y E I Y+ Sbjct: 179 EVITQLNLGRQTRDVKYATIPTANFADTIELSDLDITNYYQTNIDTYDTQEQVSIEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290 V + + ++ +++ Y+ N Y + R V ++ + + + E L Sbjct: 239 KVSDLMDGVNATDAQIEEYYQFNIANYRTEAQRRVSHILIESGDDTAAAEAKIAEVQAKL 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ G F D + +++ +L GD + ++ FG Sbjct: 299 NAGEDFAELAKTYSDDTFSAENGGDLEFITIGDLDPAFDEAVLALENVGDVSDIVATDFG 358 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406 + + +++ P+ F +VK +IA +++ A+E + + E ++++++ Sbjct: 359 FHLITLTDFTPAEVTPFVDVKDEIAEAVKLEIATEAFFVQQQTMAELAFEVPDTLEDVAS 418 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464 + PL + V +L F + + L D + Sbjct: 419 AVDKAIVKTPLFSAS-------NVPPALNNSAVLANAFSAEFIEENMNSDVIELNDEHVL 471 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++I + P R R LEEV V T K+ E + NQ++ S+E N Sbjct: 472 VMRIAQYEPQRTRSLEEVKEQVVTALTTQKSQEAALAYVNQVIAASSEEQANL---LSQQ 528 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF---PIENGLSYVVFKVTNSKV 581 G +L + + R E + +F+ + P + + V + Sbjct: 529 GLALTELSSVPREGLEG--IDSAAVEVLFTLSQSNAQAAVTLPSGDVAMVELVAVNDVTT 586 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + ++ + +T ++ + + L + + Sbjct: 587 PDTELGEQLRNRMTGQRAQNSYQAFVDALTADAEI 621 >gi|259418802|ref|ZP_05742719.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp. TrichCH4B] gi|259345024|gb|EEW56878.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp. TrichCH4B] Length = 611 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 140/628 (22%), Positives = 282/628 (44%), Gaps = 32/628 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 ++ S+T+V I + +LFV +G A+ + T+ +VG V + + +QE Sbjct: 1 MKNLSKTFV-WILMGLLFVGLAGFG---AINVSGTTRTLATVGDATVSVDDYARALQQEQ 56 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 I + G + + S+G+D+ +L LV+ A LD + ++GL + EI + Sbjct: 57 RAIQAQSGRSIPLSQLISMGVDRGVLSGLVASAALDNELGELGLSVGDEVLLKEITQISA 116 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G D FS D + L G++E ++ + +RT + G GG R +L + Sbjct: 117 FQGSDGNFSRDNYRFALDNAGLSEADFEEDMRSETARTLLQGAITGGTRMPAVLGETLTD 176 Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + RS Y+ L+ V +P+ L ++E + +++ PE K I+Y+ Sbjct: 177 YIGARRSFAYVRLSENDVILTAVEPTEDELKSFYETHIEDFTLPETKVITYVALRPDALV 236 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEE 302 ++E+ L+A YE+ ++ PE R VEQLVFPN+ A A L G F L EE Sbjct: 237 DEVEVDETALRALYEERDAEFNVPERRLVEQLVFPNEDAAATAKAQLDVGGTTFETLVEE 296 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + +LSDI +G + + + + D++F+ A+ GD + FG + V+ + + Sbjct: 297 RELTLSDIDMGDVAIDTLG--TAGDAVFA-AEVGDVVGPLPSEFGPALYRVNGVLEANFT 353 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 SF++ + ++ + +A ++ + +++ LA G +++++++ E + L +D+ Sbjct: 354 SFEDALPTLREELALDRARRVIETRSEGIDDALAGGATLEDLAKEEN--GMVLGQLDWTA 411 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 ++AA + +D P L DGS +++ E + R + E+ Sbjct: 412 DTTD--DIAAYDTFRNAAEAITIEDFP----AVDYLEDGSLFALRLDEVLAPRPQPFEDA 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 T V + +K + A+ ++ +A+Q+ S +G+ D ++ + R + Sbjct: 466 RTAVTEAFKGDRIAKALAEQADQIKAATESNDGQFPED------HEVVEQTGLTRTAYLD 519 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-----YLTQ 596 + D ++QVF V V+ G VV ++ + +F++ L Q Sbjct: 520 QT-PVDLLNQVFEMEVGEVRVVSDAEGT--VVVRLDETLPPDDGNDMQFLTQALNEQLNQ 576 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ ++ + ++S+ V+ + Sbjct: 577 SLSNEIFQIYLQAVQSRARPQVNQQAVN 604 >gi|312796419|ref|YP_004029341.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI 454] gi|312168194|emb|CBW75197.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia rhizoxinica HKI 454] Length = 638 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 108/646 (16%), Positives = 239/646 (36%), Gaps = 45/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + ++++ G+ S+ V SV +K+ + + + Sbjct: 1 MLDFFRNHKR-LMMFLLVILIAPGLGFVGVQGFRNFFDDSADVASVAGRKITRAEYEGAM 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118 +++L Q +G +++ + + + ILD+LV L + ED+ L A V Sbjct: 60 REQLDRARQVLGANFDAKAIDTPEMRRAILDSLVQQRVLAKATEDLHLSASDQAVLRAEQ 119 Query: 119 -IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I D + D + LA +G+ + + + L+ + Sbjct: 120 SIPAIAALRKPDGTYDVDQYKQLLAMQGMTPELFDERVRYQLASRQLPDGIQASAFAPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L Q ++R V ++L PS+ L Q+++ + D + PE + Y++ Sbjct: 180 LAQQLASLSEQSREVQGLMLRATDYADKVQPSDVQLKQYYDAHHDAFAMPERASVEYLML 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292 ++ + S EL+ Y+ + K+ +P ++ A +A + + Sbjct: 240 SADALAQRAQPSEAELKKYYDDHAAKFKTPGEVRASHILIAVAASASQAERDKARQKAES 299 Query: 293 --------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++F +LA++ LG F + +D+ F L KK + Sbjct: 300 ILAQVTAHPEQFAKLAQQNSDDPGSKNKGGDLGFFGPGMMVKP-FSDAAFKL-KKDQISS 357 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 ++ FGY I V++IKP T F EVK IA +++ +A++ E + + Sbjct: 358 IVQSDFGYHIIKVTDIKPEQTKPFDEVKATIATELKAEQATKAYVEQAEAFTNMVYEQSD 417 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ L+ + +LL VF D SK +T + Sbjct: 418 SLKPAADKFKLTIQTATLMREGN---PALPLTRPLNNPKLLAAVFADDSVKSKHNTPAID 474 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ + PA + + V V++ +A++ + + E K Sbjct: 475 VGNNTLVSARVVDYKPASVQPYDTVAAQVRQKVVAQLSADKARQQGEAKLAEVQK----- 529 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 A ++ R D ++ +F + + + + Y +++ Sbjct: 530 ----SESTAGFSAVTKVTRADTRG--VPPQAVAAIFKVDPQKLPAYVGVDLGDAGYAIYR 583 Query: 576 VTNSKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + + Q++ S + L+++ V + Sbjct: 584 VNAVDMPSSIDAQRLSGAQLQIGQVLGDAEWASYVDALRARSRVKL 629 >gi|237653309|ref|YP_002889623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T] gi|237624556|gb|ACR01246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T] Length = 631 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 114/649 (17%), Positives = 259/649 (39%), Gaps = 47/649 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E +R R VA++ L +L VPF +G+ ++ VG + F + Sbjct: 1 MFEAVRNNKR--VAQVILALLIVPFAFFGMDAYFSDSGSANEAARVGGTTIGAWEFDQAL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q G V+ +S L + +L+NL++ L + + L ++ IA Sbjct: 59 REQQDRLRQDGGGQVDRALLQSAELRRAVLENLINQRVLALYAAENRLVVTPQQLQETIA 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F ++ FS + + L +G+ + + + +V Sbjct: 119 GVASFQ-ENGSFSLQRYETLLRAQGMTPATFEARLAQDVRVQQIVAAVGDAGIVPQASAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+RSV L+ + + A +A ++ ++E + P + Y++FD Sbjct: 178 RFLDAQLESRSVREFRLSAKALAADVKVDDAQVSAYYEANPTRFERPARLQAEYLVFDRA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287 E+ +E+++D ++A Y+ N +++ PE R ++ + A++A Sbjct: 238 AVERGVEVADDAVRAFYDGNPQRFGVPEERQARHILLALDQGAEQAEVDRVMAEARALVE 297 Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q +F LA+E+ + LG F++ + + D++FSL +KG + Sbjct: 298 QLRADPARFAALAKEKSQDPGSAGNGGDLGFFARGVMVG-AFEDAVFSL-QKGVIGEPVR 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FG I V++IKPS F+ V+ +I ++R +A + E ++ + D Sbjct: 356 SDFGVHIVEVTDIKPSSVKPFEAVRAEILAELRAQEAGRRFAELAEQFSNTVYEQP--DS 413 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461 + + + + D+ +D +A E+++ +FG + +T + + +G Sbjct: 414 LQPAAEALGLKTATTDWISRDSAPAPLAD----ERVISALFGDEAVQKSRNTEAIEIGNG 469 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + ++K PAR L+EV + + + + + + +++ + + G Sbjct: 470 TLVSARVKAFEPARRLPLDEVRERIVELVRIEQGRVKATRAGEEMLAALRRGEQPAARWG 529 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579 + ++ + VFS E + YV++++ Sbjct: 530 EA-----------RKLQRGAPGLPAAAMQAVFSASAETLPVHVGVQSTEGDYVLYRIEAV 578 Query: 580 KVGPVQEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + + D ++ Q++ + ++ L+ +Y VT++ +Q Sbjct: 579 ERAQIGDADPRVAAVTGQYKQLLAGRDFGAFLSELRQRYEVTINPTALQ 627 >gi|66769563|ref|YP_244325.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. 8004] gi|66574895|gb|AAY50305.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. 8004] Length = 656 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 110/672 (16%), Positives = 233/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAML-PEPTADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQ-----------SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + + G F LA+ + LG K + Sbjct: 298 AGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + I +L Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGIAANPAVLRS 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V +T + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQTLPLDKVREKVIAAVHADRTKKSAV 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQSLAAAEKLQVTPIPGLPRT---APVPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + G Y VF V+ S G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELTGGRYAVFVVSKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|297538717|ref|YP_003674486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp. 301] gi|297258064|gb|ADI29909.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp. 301] Length = 633 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 113/648 (17%), Positives = 249/648 (38%), Gaps = 46/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ WV K L ++ +PF ++G+ L S + V VG + ++ N+ Sbjct: 1 MLDQIRTVAQGWVGKALLALITIPFALFGIDSYLSSAGNNVAVAKVGGNSISVQAYDNAL 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K + + + S + +LD L++ L I + ++ + Sbjct: 61 KNMRNRLQSE--GKFEQAQLDSPEVKSLVLDQLINKQLLSDEIHNAKYAISDSQLATYVT 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F KD KFS +++ L++ ++ ++ L SN D Sbjct: 119 GMPEFQ-KDGKFSQELYDQTLSQNQLSPSKFEAGMRADLLAQQAQDGIARLGFISNARAD 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + R V + + + ++E++K+ PE +I ++ Sbjct: 178 EVLKLANQQRVVTVSEIKTKDFVDQVTVKPEEVKAYYEQHKNKLIVPEQVKIEFLSLAPV 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288 + + +S+DE++ Y+ N K+ E R ++ + +A+E Sbjct: 238 NFMRNVNVSDDEVKKYYDDNAAKFQGNEQRRASHILIAFGVSATPEQKQQAKAKAEEILA 297 Query: 289 SLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +KK F QLA ++ G ++ LGSFS+ + D+ FS+ K + ++ Sbjct: 298 QIKKDPSKFEQLAVKNSQDPGSAVKGGDLGSFSRGAMVKP-FEDAAFSM-KVNQVSDLVE 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402 FGY I V+ I F +K I + KA ++ + + + + + S++ Sbjct: 356 SEFGYHIIKVTEI-SGQNADFNSLKPQIKGDLMFQKAKDEFAKQAEAFSDLVYTQSGSLE 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460 ++ V + + E+++ +F + + +T + + Sbjct: 415 PAAKAFG------GQVQKSDWLSRESGAKFFKNNEKIMSLIFSNEVLKDRRNTEAIEVST 468 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + + ++ + PA + +EV ++ K ++ SK + L+ ++GKN Sbjct: 469 DNMVSARVVDYKPAAPKSFDEVKAGIEALLKLEAASKLAISK-GEAALKDLRDGKNVA-- 525 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFK 575 G + ++R + + ++QVF + + + L V K Sbjct: 526 ----GIEWIKEVTVDRKNAQG--LTDLAMNQVFKTNTAKLPAYSGLADSKQGYLLVKVIK 579 Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 V +S + + K + L + + + + L+ + VTV++ L+ Sbjct: 580 VDSSSLADEETKKAAKAQLNAALANEYIAAYKQSLREKAKVTVNEKLL 627 >gi|293605682|ref|ZP_06688060.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292815920|gb|EFF75023.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 684 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 114/661 (17%), Positives = 236/661 (35%), Gaps = 47/661 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R W+ I L+++ F + G+ + + +V Q + + F + Sbjct: 31 MFEFIRSH-RRWMQLILLLLIVPSFFLVGIQGYDSFMRKEPELATVAGQPISRAEFDQAH 89 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q+ G + + + L + +L+ L++ L D + IA Sbjct: 90 RNQLEQMRQRQGARFDPAVSDTPALREGLLNQLINQRLLANVAVDNRFNVSDETLRNTIA 149 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ R ++ Sbjct: 150 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVGRVLDPVGQSARAPAEVVA 208 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V + S A + W++ K + PE ++ Y++ D Sbjct: 209 SLESALTQQRTVQLRRFAAEDYRSQVTVSPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 268 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------------DEAF 287 + I++ +++L + YE+NK ++ PE R ++ A D A Sbjct: 269 AATQGIQVKDEDLASYYEQNKNRFGQPERRRASHIMIELAPGASEEARKAARAKAEDLAK 328 Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ KF +LA ++ G + LG + + L +IF AK + V+ Sbjct: 329 QAAADPSKFAELATKNSQDAGSASKGGDLGWLAPGMLSGP-LEKAIFGQAKD-QVSGVVE 386 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402 G I V+ I+P+ EVK I +++R A+ E +L + + S+ Sbjct: 387 SPAGLHIVKVTEIQPAAIKPLAEVKDQITSEVRKQLAAVHFSEMASQLNKQVYDQRDSLQ 446 Query: 403 EISRREKIVSIDLPLVDFAG------------KDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + + V G D E+ P Q LF + Sbjct: 447 PAADAVGLKLRTASGVTREGLLPADKVGPGSAADSPDAELLDNPRVRQALFSGEVLREKQ 506 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + + L + V++ PA LE+V ++ ++AE + Sbjct: 507 NSG-VIELSPAVMLAVRVANVEPAHVPVLEKVSDSIRARLLQERSAEAAKKAGEAALAAD 565 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGL 569 I+R D ++ + P + + ++G Sbjct: 566 K-------ANPAAAPEGFSPAVVISRQDPKD--LPQPVVDAAMRLPASPLPGYTGVQSGA 616 Query: 570 SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 Y + ++ + G KD+ L+ + + +++++ L+ QY V V + + Sbjct: 617 DYTLVRLEKVEAGTVDASAKDRLAQQLSGGLGQAEIEALLKMLREQYKVQVLPSAAEVIR 676 Query: 628 D 628 Sbjct: 677 G 677 >gi|291614259|ref|YP_003524416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] gi|291584371|gb|ADE12029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] Length = 628 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 251/648 (38%), Gaps = 47/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +++ R + +I L ++ +PF WG++ + SG++ + +V +K+ F ++ Sbjct: 1 MFDFVQEKRR--LVQIVLALIILPFAFWGVTSY-RNSSGTAPLATVNGEKIGQQEFDSAM 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q+ + + G + + +LD LV+ + + +GL +V I Sbjct: 58 NQQQQRVREMAGANFDPAFFDKPEIKFSLLDRLVTQHLMAMEAKKVGLSITDEQVGQIIV 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F +D +F + + L +G + + + + + + + Sbjct: 118 NIGAFQ-QDGRFDRQRYEAVLRDKGKTPSGFDAEIRQAVLLQQLTESYTQNGYAPESIAE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R V L+ S+ +++++ K ++ PE ++ Y++ Sbjct: 177 KLIHLNEQQRVVAIADLDAAAFVKQVKLSDGAVSEYYNKNLQEFQLPERAQVQYVVLSSD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291 ++++ ++E++ YE+++ + + E R ++ K+A +A + Sbjct: 237 SLLSQVKVRDEEVKQYYEEHQADFGTQEQRHAAHILITVPKQASDAEKQAARTKAEQILK 296 Query: 292 ----KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 KF LA++ + LG F + + DS+FSL K G + ++ Sbjct: 297 LVKQSPAKFAALAKQYSQDPGSASNGGDLGEFGRGAMVKP-FEDSVFSL-KVGQVSDLVQ 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FGY I + +KP+ + EV+ I Q+++ +A++ E ++ + S+ Sbjct: 355 TDFGYHIIKLIAVKPAKIQALAEVRDMIIQQLKLQRANDMFAELAEKFNNTVYEQSDSLK 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG- 461 + K+ V KG+ A + + +++L VF D +K +T AL G Sbjct: 415 PAAELAKLS------VQQGVWLSKGQPPAGL-WTDKVLQAVFSDDAIKNKRNTAALEVGP 467 Query: 462 -SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + ++ + PA R L EV +++ ++ +E + + + K Sbjct: 468 NKLLAARVTDYKPASVRPLTEVSAAIQQKLLQLQASELARQQGRDFLGKLQHGEKP---- 523 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV----VFKV 576 G I R N + + +FS + + + S + +V Sbjct: 524 ----GVKWTAAQSITRNQRSN--IDPELLQAIFSADTSKLPAYVGVDSASGFKLARIDEV 577 Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ + ++ + Q+ L + + + + S+T+ + + Sbjct: 578 KDAATVDEGKIARYEQQIRQITGDALWRAYMEDARKRASITMKEFAAE 625 >gi|237807859|ref|YP_002892299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis DSM 9187] gi|237500120|gb|ACQ92713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis DSM 9187] Length = 638 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 117/638 (18%), Positives = 252/638 (39%), Gaps = 34/638 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R ++ VAKI ++ + F + G+ + S + + V V + + + S++ Sbjct: 3 MDKLRDGAQGRVAKIIFWLIILSFALAGVGSYINSPASNDPAV-VDDEVISAQTLEQSYQ 61 Query: 62 QELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E + + G + L K +L+ LV+ + L+ + G+ +V Sbjct: 62 NERARMQAQYGEAAAQLLDNPQYLAQLKKSVLERLVNQSLLNNKALNAGVRLSDEQVKDV 121 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + P F DNKF + F + L+R G + + + + L R + + Sbjct: 122 IRQMPEFQ-TDNKFDNQKFTTALSRVGYTPESFANSMRQDLIRQYWLDGILTTEFALPAE 180 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + Y + R V I + ++ + +++ + + + E +++YI+ + Sbjct: 181 VSRLDALYQQKRDVKMITIPVETFSKQITVTDQDVDAFYKAHSNEFMQSEQVKLNYIVLN 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------QKEADEAFQSLKK 292 + K I+ ++ EL+A Y+++ E + P R V ++ + QK+ADE LK Sbjct: 241 SADLAKTIQPADSELKAYYQQHAELFTEPARRKVSHILITDKDDNAAQKKADELLAKLKS 300 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F QLA+ + L F K + D + + F+L +K + + V+ +FGY Sbjct: 301 GTDFTQLAKTESADTLSARQGGELDWFEKG-VMDPAFETAAFALNQKNELSAVVKSAFGY 359 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407 I + + + + + +V + + KA E + ++L + S+D ++ Sbjct: 360 HIIKLLDKQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKLSDIGFENPDSLDAVAEG 419 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K+ L DF E+ KEQ ++ + +++ D + + Sbjct: 420 LKLP---LQKTDFIAAQQLPAEINVPAVKEQAFAEKLRDEN--TNSEVISVSDTVAVMLH 474 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + P+ + L EV V + K AE+ ++A L LE K G++ + L A Sbjct: 475 VIDYKPSSAKPLSEVKDLVVAKLRATKAAEKAHTEAMAL-LEKVKAGQSIDEQLTKLNAK 533 Query: 528 LLTTNQINRMDNENKFFGYDGISQVF--SGPVEMVKCFP--IENGLSYVVFKVTNSKVGP 583 + + R + VF + P + V + + V + P Sbjct: 534 VEEKKGLARFGTD---IPAPLAQAVFKLAKPADKVVSAGLYADEEGNQSVLVLEKVISAP 590 Query: 584 VQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617 L++ + ++ ++I L+ + + Sbjct: 591 ETADAPLQQGLSEQLVKLKQEETYGALIEELRQKAKIK 628 >gi|121604540|ref|YP_981869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] gi|120593509|gb|ABM36948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] Length = 645 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 125/641 (19%), Positives = 245/641 (38%), Gaps = 37/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + IRK ++ W + +++ F++ G++ S G V V ++ + Sbjct: 1 MFDFIRKHTK-WTMALLFLLIVPSFILVGMNSNPSSEKGG-VVAKVDGTEITQPEWDREH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +E+ + + ++++ S L+ +V + E + L + E+ Sbjct: 59 LKEVDRLRASMP-TLDAKLLDSPEARYATLERMVRDRVVAVAAEKLKLSTSDQHLARELQ 117 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 SP D D + L +G++ + + + LSR V+ G SN Sbjct: 118 NSPEIAALRRADGSLDMDRYRQLLGTQGMSPEMFEANVRTDLSRRQVLAGVSGSGFASNS 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D A YFE R + N A P++A L Q+++ + ++APE I Y+L Sbjct: 178 AADMALNAYFEKREIQLARFNAADYAAKLTPTDADLEQYYKANEKLFQAPEQASIEYVLL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 D+ +K I ++ +L+ YE+N + E R ++ + +A+E Sbjct: 238 DLEALKKGIAVNEADLKTYYEQNARQLSGTEERRASHILITASKTASPEEREKAKTKAEE 297 Query: 286 AFQSLKK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++KK + F +A ++ G + + L F++ + S D+ FS+ KGD + Sbjct: 298 LLATVKKSPENFADVARKNSQDPGSATNGGDLDFFARGAMVK-SFEDAAFSM-NKGDISE 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FGY I +++IK +F+E++ + +++ +A +K E + + Sbjct: 356 VVASDFGYHIIKLTDIKAPKQRTFEEMRPQLEAELQKQQAQKKFSEAAEAFSNGVYEQSD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ R K+ V V + L +F D K +T A+ Sbjct: 416 SLKPVAERLKLEVKTAGNVGR----QPASGVTGALANPKFLTALFSPDSIEKKRNTEAIE 471 Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G V +I + PAR + L +V +V++ W ++AEE + E+ Sbjct: 472 VGPSQLVSGRIVQYTPARTQPLADVKDNVRQRWLAQRSAEEARKDGVAKLTEWKAAPSTA 531 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 + + S Q+ + G +FSG + + I V KV Sbjct: 532 TALTSPILVSREQAQQLPVQVVDAALRADTGALPIFSGIDLGAQGYAI-----VKVNKVV 586 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + S Q + LK ++ + Sbjct: 587 PRDAPLEAAAKQERSQYGQWWTSAEALAYYNGLKDRFKAEI 627 >gi|187478461|ref|YP_786485.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N] gi|115423047|emb|CAJ49578.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N] Length = 648 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 111/652 (17%), Positives = 244/652 (37%), Gaps = 45/652 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R W+ I LV++ F I G+ V+ + ++G Q + F + Sbjct: 1 MFEFIRTH-RRWMQFILLVLVVPSFAIVGVQGYSSFVNTEVELANIGGQGITQPQFDAAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + L +++L+ L+ L D + IA Sbjct: 60 RNQLEQFRQRMGSQFDPAVIDTPALREQLLNQLIDQRLLLMVAADNRFSVSDETLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P D +FS + + LA +G++ + + + L+ V+ R +++ Sbjct: 120 AIPQVQD-DGRFSPERYRQVLAAQGLSPTSFENGLRRDLAVARVLEPIGLSARVPQEVVN 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ + R++ + + S + W++ K++ R PE + Y++ D Sbjct: 179 NVEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289 + +++ ++++ + YE+NK ++ +PE R ++ + ++ Sbjct: 239 AATQGVQVKDEDIASYYEQNKNRFGTPEQRRASHILIEAPASGEARDKARAKAEAIAREA 298 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F +LA++ + LG + +P S+ +I L K G + V+ Sbjct: 299 AANPASFAELAKKDSQDAGSAARGGDLGWIAANSVP-PSVQQAIDGLPKDG-VSGVVESP 356 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEI 404 FG+ I V++IKP+ EVK+ I N++R AS + E +L+ + S+ Sbjct: 357 FGFHIIKVTDIKPAQIKPLAEVKEQITNEIRKQLASARFAEMATKLQSAVYDQRDSLQPA 416 Query: 405 SRREKIVSIDLPLVDFAGKDVKGK---------EVAAIPYKEQLLFRVFGKDDPLSKDHT 455 + + + +G + AA+ ++ +F D K +T Sbjct: 417 ADALGLKLRTAAGISRSGLLPADQAGAGSAAASPDAALLDNPRVRQALFANDVLREKQNT 476 Query: 456 --VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + L + + +++ P+ L++V ++ ++A+ + + Sbjct: 477 GVIELAPDTLLALRVAVLEPSHIPPLDKVKDSIRARLLDERSAQAARQAGEEALK----- 531 Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYV 572 ++ ++R D+ N + V + + +G YV Sbjct: 532 ----ASQAQDSDQGFSAPQTVSRQDSGN--LPRSLLEAVMRLDAAKLPAYTGVASGSDYV 585 Query: 573 VFKVTNSKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 V ++ + G Q S L + +V+ L+ Y V V Sbjct: 586 VLRLDKVEAGQADPQAAATLASQLGSAWGEAEDQAVLKMLREAYKVQVLPAA 637 >gi|192360723|ref|YP_001982468.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus Ueda107] gi|190686888|gb|ACE84566.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus Ueda107] Length = 621 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 111/631 (17%), Positives = 228/631 (36%), Gaps = 27/631 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ ++ I + L V F ++G+ ++ VV V +K+ N+ Sbjct: 1 MLQSIRDNSKGVISYILIGFLVVIFALFGVESLFNWNPTANKVVEVNGEKITQVELQNAI 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + G V SE L K +LDNL+ L Q + G+ + + +I+ Sbjct: 61 ARQKQQMMNRYGDQVPSEFLSEDYLRKPVLDNLIQNQVLYQAAKKAGMTVGNDLITEQIS 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P+F + F + + L+ G Y K L + + ++ Sbjct: 121 SAPVFKNEAGVFDNTRYRQALSMMGYTHATYTQQLAKDLVLNQLYTGLASSSFTTPNEIE 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q ++ R Y VL + + S+ + ++ K Y + E + YI V Sbjct: 181 QLIALSYQTRDFSYFVLPSSKIKESVVVSDEEIADYYAKNPQAYTSEEQVAVDYIELSVD 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ--KEADEAFQSLKKGKKFIQ 298 I IS ++L +YE+ + + R ++ NQ ++ + L G+ F + Sbjct: 241 ALMADISISEEQLHKQYEQGLASFVAAPERHAAHILVENQDAEKIKAVREKLAAGEDFAE 300 Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA+ L G F+K ++ L K G+ + + G + Sbjct: 301 LAKTYSDDLGSKEQGGDLGFTKGDTFPAEFETALAGL-KVGEVSAPVETDAGTHFIKLLA 359 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + S SF+E K + ++ +A ++L+E S+ E+++ + Sbjct: 360 ERGSQAPSFEEQKASLEEHLKRAEAENIFVAKLEQLKELAFNADSLAEVAKEIDAKVSNT 419 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIP 473 L I + + F +D + + L + ++ + P Sbjct: 420 GLFSRTSG-------QGIAANKLVADAAFSEDVLQDGNSSEPIELDTTRAVVIKKTDYQP 472 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 +R L+EV + K E + +K +QL+ + GK ++ G +L T Sbjct: 473 SRLLPLDEVKQQIVGVLTESKARELMRTKGSQLLADL-HAGKALDELASAEGQALKTAAA 531 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS----YVVFKVTNSKVG----PVQ 585 R ++ + F + + ++ Y + ++ +G + Sbjct: 532 AKRYGSD---VEPEIAGFAFDMAKPTAEVASVAGFVTASGDYALIQLAAVNLGAEEIAEE 588 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 +K ++ + M S YLK + Sbjct: 589 QKKAIVAQVGNMNGLADFSSFQGYLKEVADI 619 >gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas arsenicoxydans] gi|133738857|emb|CAL61904.1| putative peptidyl-prolyl cis-trans isomerase D, ppiD-like [Herminiimonas arsenicoxydans] Length = 636 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 107/641 (16%), Positives = 234/641 (36%), Gaps = 39/641 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R + + L+++ F GL S+TV V Q + + + Sbjct: 1 MFEFIRTH-RRLMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQ 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ Q G +++ + ++IL+NL++ L + L + I Sbjct: 60 REQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIV 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 D KF + + + LA +G+ Y + L+ V + L Sbjct: 120 NMGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAK 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R V + ++ +L ++EK + + PE + Y++ Sbjct: 180 RLSELGEQEREVQQLAFKTSDYAGQVKVTDDMLKSYYEK-SNQFNVPEQVKAEYVVLTAD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290 +I +S+ ++++ YE+N + Y E R ++ K+A +A ++ Sbjct: 239 ALAAQINVSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLA 298 Query: 291 ---KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 K ++F +LA+E LG F K + ++ F L K+G+ + ++ Sbjct: 299 TLHKNPQEFAKLAKENSSDTGSAERGGDLGFFGKGMMVKP-FEEAAFKL-KQGELSDLVQ 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 +G+ I ++ IKP+ + EVK +IA+ +R ++K E + S+ Sbjct: 357 SDYGFHIIKLTAIKPASIKTLDEVKNEIASDIRKQLVAKKYTETADVFSNTVYEQADSLK 416 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHT--VALP 459 ++ + K+ + + PY Q L +F + +K +T V + Sbjct: 417 AVADKLKL---KIETTGDLSRQPNPAVAPTAPYNNQKFLTALFSDESLKNKRNTEAVEVA 473 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + ++ E PA R +EV V + + A + Sbjct: 474 PNTLIAGRVTEYKPAAKRPFDEVKAMVHERVVQEEAAALAKKAGEAKLAALQ-------- 525 Query: 520 IGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYV-VFKVT 577 K+ + T ++R ++ + + + + + + G + + +VT Sbjct: 526 -AKDDASGFSATQIVSRAKSQGLNPAVFLAVMKADTSKLPAYVGVDLPQGFGVLRIVRVT 584 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 ++ +T + + + I LK + V + Sbjct: 585 QPANVDSAKRQAEHQQITAALAQQETFAYIEALKQKAKVKI 625 >gi|315634906|ref|ZP_07890188.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC 33393] gi|315476458|gb|EFU67208.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC 33393] Length = 615 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 111/632 (17%), Positives = 244/632 (38%), Gaps = 29/632 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS W +K + V F+I ++ L++ ++ V +++ +++ Sbjct: 3 MEKLHGASTNWASKFLFGFITVTFVISSMAGYLYTRV-DNSAAKVNGEEIS----QQAFQ 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + S+ + A+ L +++L +L+ L Q+ ++ L R+ EI Sbjct: 58 NQYNIASRNLTPQEIDSPAQVANLKRQVLASLIDQELLRQYANELKLGVSDARIKQEIVT 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +P F + KF + ++ L GI+ + Y + + L + ++ Sbjct: 118 TPTFQN-NGKFDNTLYQQTLQNNGISAETYAGYVREALRLEQLQSGLGTTTFSVPAQQEK 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +F++R + L+ + A + S+ + +++ +K + PE ++ Y+ Sbjct: 177 LTKLFFQSRQIRLANLSLANEIAKQEVSDEEIQAYYDAHKAEFTIPETVKVQYLDLSGAA 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 E I I++ E+ Y+ NK ++ + + + + +++A E +Q L+ G F LA+ Sbjct: 237 MENNINITDVEIAQYYQDNKPQFTTQGQQRLAHIQVKTEQQAQELYQQLQNGANFADLAK 296 Query: 302 EQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + L S P V D+ +LA G ++ ++ Y I V K Sbjct: 297 NHSIDPTSAERGGDLSWVSAGEFPKV-FEDAANALA-VGQYSQPVNLDNHYHIILVEERK 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + VK IA Q+R + + KR+ E S + + + Sbjct: 355 EPQLQPLESVKAQIAAQIRQNLVNTQFYSIEKRVAEKAFEDPSSLNAAAEVG--GVKVQE 412 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475 + +D ++ A ++ VF D S + + + + V++ + P Sbjct: 413 TAYFSRD----DIPAELNYPNVVSAVFDSDLSQGGSNSEPMNVGEQHSVVVRVLDHKPQS 468 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + L+E D+ K K V ++A Q+V S EGK+ G Sbjct: 469 IKTLDEAKADITAHLKHQKAEAVVLAQAEQIVQNLS-EGKSVE------GVKFSAEQTWV 521 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISY 593 +N++ S + V+ + G QE+ +F Sbjct: 522 FAENKDPVLNNTVFSMAKPEEGKTTYKAASNANGDVVIIALDKVVDGKLTEQEQKQFAVQ 581 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + Q+ L +S++ L+++ + ++D+ I + Sbjct: 582 IEQLSQVSLQNSLLNALRAKAKIKINDSFINQ 613 >gi|114765314|ref|ZP_01444431.1| hypothetical protein 1100011001355_R2601_24744 [Pelagibaca bermudensis HTCC2601] gi|114542294|gb|EAU45323.1| hypothetical protein R2601_24744 [Roseovarius sp. HTCC2601] Length = 615 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 127/636 (19%), Positives = 260/636 (40%), Gaps = 38/636 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 + + I +L F+ +G + G + SVG + S + + + EL Sbjct: 1 MARGKAGITKYIVWAILIASFVGFGAFGTVNFSGGVGNIGSVGDTTISTSDYARALQSEL 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + G + E+AR GL ++L +V+ A L+ IGL RV +++ Sbjct: 61 RAQQAQTGRAITVEQARQSGLTDQVLAQVVTNAALEDETTRIGLSVGDERVAEDLSNVEA 120 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F+G D F + L G+NE E+ ++ + +R+ + + G + +D Sbjct: 121 FNGPDGNFDRSAYAYALQNAGLNEGEFEENLRRDAARSILSAAVISGTTLPDAYVDTLLE 180 Query: 185 FYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + E+R+ + L + + PS L W++ D + PE K I++ Sbjct: 181 YIGESRAFTWATLERDALNTGLPVPSEDELQAWYDDNIDLFTLPETKVITFAWLTPDMIV 240 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEE 302 +E+ D L+A Y++ E++ PE R +E+LVF + EA A + F + +E Sbjct: 241 DTVEVEEDALRAAYDERAEEFNLPERRLIERLVFSTEAEAQAAADRIASVEADFETVVDE 300 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +G +L D +G +++ + D A+ +FS A+ GD SFG + V+ + P+ Sbjct: 301 RGLALIDTDMGDVTRDTLGDA--AEPVFS-AEVGDVVGPAPSSFGPALYRVNGVLPAQET 357 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 ++E D+ + + + +A ++ +++ LA G +++E+++ ++L +D+ Sbjct: 358 PYEEAVPDLRDALVLDRARRVIEGMASSIDDELAGGATLEELAQD---TDMELGQIDWTA 414 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 G +A + V D P L DG +++ E E+V Sbjct: 415 STDTG--IAGYQSFREAASAVAEGDYP----AIAELGDGGIFALRLDELRAPAPAPFEDV 468 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---GKNFRDIGKNLGASLLTTNQINRMDN 539 V++ W+ + + + ++A ++ S++ G+N D G + + Q Sbjct: 469 RDRVEQLWEQEQATDALLTQAEEIATRISEDQSFGENGLDASAESGLTRESRIQ------ 522 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM- 598 + VF + + V V PV +D I L + Sbjct: 523 ---GLPAAVLEAVFDMAAGEARAVRGDG----AALIVRLDDVTPVNMEDPQIQQLGNALR 575 Query: 599 -------NKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 ++DL ++ A ++S+ +++ + + L Sbjct: 576 DQAAGSVSQDLFRALNADIQSRAGISIDQSAVNSVL 611 >gi|317403066|gb|EFV83601.1| peptidyl-prolyl cis-trans isomerase D [Achromobacter xylosoxidans C54] Length = 656 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 107/663 (16%), Positives = 240/663 (36%), Gaps = 47/663 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R W+ I L+++ F + G+ + + +V Q + + F + Sbjct: 1 MFEFIRSH-RRWMQFILLLLIVPSFFLVGIQGYESFMRKEPELATVAGQPISRAEFDQAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + L + +L+ L++ L D + IA Sbjct: 60 RNQLEQYRQRLGAQFDPAVIDTPQLREALLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ R ++ Sbjct: 120 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPAEVVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V + + A + W++ K + PE ++ Y++ + Sbjct: 179 SLETALTQQRTVQLRRFAAADFRSQVTVTPADIQAWYDANKQQLQVPEQVQVQYLVLNEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287 + +++ +++L + YE+NK ++ PE R ++ A E A Sbjct: 239 AATEGVQVKDEDLTSYYEQNKNRFGQPERRRASHIMIEVPAGASEDARKAARAKAEALAT 298 Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ +F +LA ++ G + + LG + + L +IFS +K + V+ Sbjct: 299 QAAANPAQFAELARKNSQDAGSAANGGDLGWLAPGMLSGP-LEKAIFSQSKD-QVSGVVE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402 G+ + V+ I+P+ EVK I ++R A+ + E +L + + S+ Sbjct: 357 SPSGFHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQVYDQRDSLQ 416 Query: 403 EISRREKIVSIDLPLVDFAGK------------DVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + + V G D + P Q+LF + Sbjct: 417 PAADAVGLKLRTASGVTREGLLPADQAGPGSAVDSPDAALLDNPRVRQVLFSPDVLREKQ 476 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + + L + + V++ PA L++V ++ ++AE + Sbjct: 477 NSG-VIELSPDTMLAVRVAAVQPAHVPPLDKVSDSIRAKLLDERSAEAAKKAGEAALAAD 535 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGL 569 + ++R D +N + V P + + ++G Sbjct: 536 -------QANPAAAPEGFGGPLVVSRQDPKN--LPRSVLDAVMRLPAAKLPAYTGVQSGA 586 Query: 570 SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 Y + ++ + G +K++ L + ++++ L+ +Y V V + Sbjct: 587 DYTLVRLEKVEAGTVEAADKERLAQQLAGAWGQAENEALVRMLREEYKVQVLPAAAEAIR 646 Query: 628 DGE 630 G+ Sbjct: 647 GGD 649 >gi|146279132|ref|YP_001169291.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC 17025] gi|145557373|gb|ABP71986.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC 17025] Length = 655 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 125/617 (20%), Positives = 258/617 (41%), Gaps = 27/617 (4%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 V + ++ V +G+++ G STV SVG + + + + + +QE+ + +I Sbjct: 53 IVFWGLVALMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTADYARALQQEMRALGAQI 109 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 V E AR+ GLD+++ LV+ A L + +GL RV EI S FHG + Sbjct: 110 NQPVTMEMARAFGLDQQVRRRLVTQAALSNEADRVGLSVGDARVAEEITGSDSFHGPSGQ 169 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F + + L + ++E E+ + + +SR+ + G GG L+D + E RS Sbjct: 170 FDRETYRLVLRQNNLSESEFENGLREDISRSLLQGAVGGGFVAPAALVDTLHAYIAERRS 229 Query: 192 VDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + ++ A +P+ L W+E + ++ APE KRI+Y E + + Sbjct: 230 FSLLRVQEANLGAPLPEPTEDELQAWYEAHPADFTAPERKRITYAALLPQEVAPTLPVDE 289 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 + L+ Y++ ++ PE R VE+L F + A EA + +G F L E+G L DI Sbjct: 290 EALRRLYDQRLGEFVQPERRLVERLAFSTPEAAAEARARIDEGTPFETLVSERGLELIDI 349 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +G +++ + + A+++F+L + G + G + V+ + + F+ V+ D Sbjct: 350 DMGDVTRDELG--AAAEAVFALTEPG-IAGPVETGLGPALFRVNGVIAAQETPFEAVRDD 406 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + + + A+ + ++++ LA G +++E+ + + D + Sbjct: 407 LLAEYQQDAAARAISGRRDQIDDLLAAGATLEELGTEAGMKIATVDYAPGLDSD-----I 461 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 A + D P TV L DG + +++ E +P + + EEV +V + Sbjct: 462 AGYEAFRTAADALQPDDFP----ETVQLNDGGLLAMRLDEVVPPQLKPFEEVRDEVAEAV 517 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 + + ++++ + ++EG + G + + R D + ++ Sbjct: 518 RADALDKALAAR-AAEIATAAEEGTDLGSFG-----PVEDLGPMTR-DGFVENVPETLVT 570 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI----SYLTQMMNKDLLDSV 606 F ++ + G + + + Q +++D L Sbjct: 571 TAFGMEEGALRAIDGPGFAGVLRLDTVEPAAGDDEAARALKASLSAQIEQALSQDALALF 630 Query: 607 IAYLKSQYSVTVHDNLI 623 L + +T++D I Sbjct: 631 SNSLMQEAGITLNDAAI 647 >gi|254465313|ref|ZP_05078724.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium Y4I] gi|206686221|gb|EDZ46703.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium Y4I] Length = 613 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 134/633 (21%), Positives = 265/633 (41%), Gaps = 32/633 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++K S+T+V I + +L V +G A+ S SS+V VG ++V S++ Sbjct: 1 MAAGMKKLSKTFV-WILMGMLIVGLAGFG---AVNFTSSSSSVAQVGDEEVSIGSYVREL 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + + G V + + G+D+ +L L+S A LD +GL + E++ Sbjct: 57 QREQRALQAQTGQAVTMAQMSAFGMDRMVLGRLISLAALDHESRQLGLSIGDDNLIEELS 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F F + + L G+ EKE+ D + +RT V + G + L + Sbjct: 117 AIDAFKNVSGGFDREAYRFALRNAGLTEKEFEDDLRREAARTMVQNAMLSGTKMPATLTE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 F RS Y+ LN + A+ PS+A L ++E +D + PE K I+Y Sbjct: 177 TLTSFIGARRSFSYVQLNAADIALTAEAPSDADLQAFYEANQDQFMLPETKVITYAALRP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298 +IE+ +LQ +E ++Y PE R VE+LVF ++ A A L+ G F Sbjct: 237 STLLDEIEVDEAQLQRLFEDRADQYQVPERRLVERLVFGSEDAAASAKAQLETGGATFES 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L E +G +L D +G + + +F+ + GD + G + V+ Sbjct: 297 LVEARGLTLQDTDMGDVAMGDLGAAGTE--VFA-TQVGDVAGPLPSDLGPALYRVNGRLE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + +F++ K ++ ++ +A V+ + +++ LA G +++E++ ++L + Sbjct: 354 AQITTFEDAKPELIEELASDRARRLVESQAEGIDDMLAGGATLEELATE---SGLELAQI 410 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 ++ G +AA V +D P L DGS +++ + +P R Sbjct: 411 NWTEDTSDG--IAAYEAFRTAAAAVTAEDFP----EAGFLEDGSLFALRLDDVLPERPEP 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 + V W+ + A+ + + ++ + + G G GA + T + R Sbjct: 465 FADAKDKVLAAWQADRLAKALKDQGEAVLAQAEQAG------GFAEGADVKTEPGLTRTA 518 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISY 593 + +SQVF+ + +++ S VV ++ + + Sbjct: 519 YIDTV-PEPLVSQVFTMETGDFRL--VQDADSAVVVRLDAILPPEQSDDMTLLAQALQAQ 575 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L Q + ++L ++ + ++++ V + Sbjct: 576 LDQSLAEELFEAYVQDVQARAEPRVDQQALNAA 608 >gi|84686955|ref|ZP_01014838.1| hypothetical protein 1099457000244_RB2654_01575 [Maritimibacter alkaliphilus HTCC2654] gi|84664929|gb|EAQ11410.1| hypothetical protein RB2654_01575 [Rhodobacterales bacterium HTCC2654] Length = 613 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 122/632 (19%), Positives = 257/632 (40%), Gaps = 34/632 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I + I + ++ V + +G ++ ++ VG ++ S++ Sbjct: 1 MFSNI----SRFFVWIIMALVMVGLIGFG---SVNFGGSGQSIGKVGDTEIDASAYFREL 53 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E Q+ G + A+ +GLD+++L +V+ ++ + +GL + + Sbjct: 54 NAEFQGWQQQTGQNLTMAEAQEIGLDQRVLSRVVAITAVENETDRLGLSVGDQNLASRVT 113 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G + +F D + L + G+ +E+ + ++RT + G + ++ D Sbjct: 114 EIPAFQGPNGQFDRDTYDFVLEQSGLTAREFEETLRLEVARTILAGAVTSDLEMPDVYTD 173 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E R + + + +P+ A L ++E D++ PE ++I+Y Sbjct: 174 TLFGWARETRDFTWAPVTRSALEEPLPEPTEADLEAYYEANPDDFTTPETRQITYGWLKP 233 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 + +I + + +LQA Y++ +++ PE R VE+LVF + EA A ++ G+ F Q Sbjct: 234 EDVLDEIPMDDTQLQALYDQRIDEFQVPERRLVERLVFGSADEAQAAADRIEAGETTFDQ 293 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + +G SLSD+ +G ++ + + IF+L G I G + ++ I Sbjct: 294 EVQARGLSLSDVDMGDVTRRALGQA--GEPIFALDAPGVV-GPIETDLGPALFRMNAILS 350 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + SF+EV+ + + A V+ ++E +A G +++E++ I + + Sbjct: 351 AQETSFEEVRDQLFEEYAADAARRLVRTRATEIDEMMAGGATLEELAAE---GLITVDTI 407 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + + G +AA + D P L DGS +++ E P + Sbjct: 408 GYFDGNQDG--IAAYAPFREAASEASESDFP----EVTELEDGSVFALRLDEITPPALQP 461 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L+EV V W+ E + ++A L+ ++ ++ + +G + + I R Sbjct: 462 LDEVRDAVVAGWEAQTLTEALVARAEALIPQF----ESGAEAPSTVGLTEVLEEDIARTS 517 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFIS 592 I F + + VV +T+ K F + Sbjct: 518 FIQGT-PSTMIETAFEMEEGTWQVVSGDG--QVVVLGLTDVNAPDQDSAEAQEIKTTFGA 574 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++Q + D+ D+ A L++ VT+ +I Sbjct: 575 RVSQQIAADVQDAFAAALEADAGVTLDQAMIN 606 >gi|325518979|gb|EGC98507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. TJI49] Length = 644 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 106/659 (16%), Positives = 242/659 (36%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPDHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V +VL A P++A L +++ +K ++ PE I Y+++ Sbjct: 180 LAQHLSELAAQQREVQALVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAASAQPTDADVKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+G+ + Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F EVK +IA ++ AS+ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSAVKPFAEVKDEIAASLKQQYASKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + P + L VF D ++++T + Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDSVKNQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ E PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTEHKPATVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 TEGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + Q+ + ++ +A L+ + V ++ + + DGE Sbjct: 585 RVNAVVPGSAVDPQQLAGAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSKDGE 643 >gi|149913756|ref|ZP_01902288.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. AzwK-3b] gi|149812040|gb|EDM71871.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. AzwK-3b] Length = 613 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 116/630 (18%), Positives = 246/630 (39%), Gaps = 31/630 (4%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K I + +L + +G ++ + TV VG ++ + + + + E+ Sbjct: 4 KGISRTFVWILMGLLIIGLAGFGATNLGGAFG---TVARVGTAEIRTNDYARALQNEIRA 60 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + G ++ ++AR +G+ ++L LV+ A+ D +G+ + +I P F Sbjct: 61 REAERGGAISFQQAREMGIPDQVLAQLVTTASFDHEATRLGVSIGDDNLRQQILGIPAFQ 120 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 G D F + + L R G+ E E+ D + +R V + G+ + + + Sbjct: 121 GIDGNFDREAYAFTLDRIGLTEAEFEDDMREETARALVQSAVMAGVTVPDAYFETLLTYL 180 Query: 187 FENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E R V + VL + + P+ L + + ++ PE KR++Y Sbjct: 181 GEERDVTWAVLERADLDTGLPTPTEEDLRSYHQGNLPSFTTPETKRLTYAWLTPEMIIDT 240 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQG 304 +E+ L+ YE+ +++ PE R VE+L F + A+ A + G F L ++G Sbjct: 241 VEVEEQSLRDAYEERIDEFNQPERRLVERLAFADTGTAETAIAGINDGSTDFETLVAQRG 300 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 L D+ LG ++E + + A+ +F+ A+ GD + G + ++ I + +F Sbjct: 301 LDLVDVDLGDVAREDLG--TAAEVVFA-AQAGDVVGPVETDLGPALFRINAILSAQETAF 357 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +E + + + + +A + R+ + LA G ++++++ ++ +D+ Sbjct: 358 EEAEPLLRDTLAADRARRVIDSRIDRIADLLAGGATIEDLAAE---TDMEQGQIDWHPGV 414 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 +G + A Q + D P L DG +++ + + L+EV Sbjct: 415 TEG--IGAYDAFRQAAQAITEDDFP----DVEQLGDGGIFAMRLDRVVDPEIQPLDEVRD 468 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V W+ T ++ KA LV + + G++F D LG L + R + Sbjct: 469 AVLAGWRQQATVAALTEKAEPLVADL-RNGRDFAD----LGLDTLDAQNLTRQGFQPDT- 522 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598 + I VF + IE + ++ + + M Sbjct: 523 PTEFIETVFDMEQGGIAL--IEGTTRVFILRLDAVRPPSSDNEELARLRTALRDQSASSM 580 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 +D + ++++ + + I Sbjct: 581 AQDFYQLLATDIRTRAEIEIDQQAINAVHG 610 >gi|119945205|ref|YP_942885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] gi|119863809|gb|ABM03286.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] Length = 631 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 112/639 (17%), Positives = 255/639 (39%), Gaps = 34/639 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ AKI +VV+ + F + G+S L SG S V+V +++ ++ ++ Sbjct: 1 MLDKMREGAQGATAKIIIVVIILSFALAGVSSYL-GGSGISVAVTVNDEEISKATVDQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + Q+ G S + + ++ + ++S L Q I+D+GL +V Sbjct: 60 QNERTRLEQQYGEQFALLASTPNFNQKIRQQAMQTVISERLLTQAIKDMGLRIGDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI + F D F+++ ++S L R ++ + L+R ++ M +G + Sbjct: 120 EIRKMKEFQ-VDGNFNNEQYLSLLRRASYTPAQFSQSIKQDLARRQLLTMVLGSEFILPM 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + QA R + R + + S ++ ++E ++ E + Y++ Sbjct: 179 EVQQANRLQAQKRVARVLTVKASDFADKDPISEQEISTYYENNSQFFQTAEQVSVDYVVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292 D ++ +S++EL+ Y+ + Y E R V ++ +++A L++ Sbjct: 239 DGSLLADRVTLSSEELEKYYDMHASDYQRGEKRKVAHILLLGDNSAAKEKAQAILSELEE 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F QLA ++ + ++ L F + + D + D+ F L K+ + ++ FGY Sbjct: 299 GADFAQLAAQKSEDSYSAENNGELDWFERG-VMDPAFDDAAFKLTKEAPLSNIVKSQFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRR 407 I + +I+ S + EV + N + + + E ++RL E ++DE +R Sbjct: 358 HIIKLVDIQESKKLPLSEVTAQVENAAKREEMNNLYYELHQRLSEAAFERPDNLDEAAR- 416 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 ++ D+ + + + + + F +D + L + + V Sbjct: 417 --VLGTDIQHTELFSAAEAPEPLTDNAVLKIVFDSAFRED--RMNSELIELSENKVIVVH 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + A + L +V + + K + L+++ K ++ I + Sbjct: 473 VNRYQAAALQPLADVSEQIIAQLQAQKAHKNTEEFVKSLMVKL-KAQESIETILTEKNLA 531 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGP 583 + R D+E Y + VF + + + Y + ++T+ + Sbjct: 532 FSDPSTFTRNDSE---LDYRVMQAVFKLAKPTEQQATYDWVTTSTDDYALIELTSVEELD 588 Query: 584 VQEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + K K L ++ ++ ++ L + + Sbjct: 589 SELKNVDKIQKLEERLQRLFSESTYQALSMALMANADIK 627 >gi|260433616|ref|ZP_05787587.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417444|gb|EEX10703.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 613 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 135/595 (22%), Positives = 258/595 (43%), Gaps = 27/595 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 TV VG + + ++ ++E+ + + G + +AR +GLD++ L LV+ Sbjct: 33 SGTVRTVAQVGDEVITVDAYARELQREIRAVEAQTGQPLQMSQARDLGLDQRALSRLVAL 92 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 A LD + +G+ + EI R F G D F + + +L + G+ E E+ + Sbjct: 93 AALDNEVAQLGISVGDENLQKEILRIQAFQGADGSFDREAYRFQLEQIGMTEAEFEEDLR 152 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215 K +RT V G + G+ +L D + RS L+ + A +P++A + Sbjct: 153 KETARTIVQGAIMNGIEMPAVLTDTLADYVQARRSFTVATLSADALDAPVPEPTDADIQA 212 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++E D + P K+I+Y + + +E+ D L+ Y++ KE+Y PE R VE+L Sbjct: 213 FYEANTDRFTLPRTKKITYAVLSPAMLQDTVEVDEDALRRLYDQRKEQYQQPERRLVERL 272 Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 V+P++ EA EA L+ G F QL + LSD+ LG +++ + + AD++F+ A+ Sbjct: 273 VYPSEAEATEAKAQLEVGGVDFEQLVRARELELSDVDLGDVTRDDLGEA--ADAVFA-AE 329 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + +FG + V+ V+F E + ++ ++ +A ++ + + Sbjct: 330 VGDVVGPLPSAFGPALFRVNGTLAEHNVTFDEAEPELREELAAERARRVIESQAEEYNDM 389 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G +++E++ ++ + +D +AA V D P Sbjct: 390 LAGGATLEELAAETEMELGQIDWTAQTDED-----IAAYDAFRSAAQAVGEGDFP----E 440 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 L DGS +++ E +P R LE V + WK + + + KAN +V + EG Sbjct: 441 IGFLEDGSVFALRLDEELPPRPEPLESARDRVIEAWKQEEIGKALLEKANTVVTSLAVEG 500 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 G N + R + G D ++QVF ++ P + + Sbjct: 501 DF-----AATGLPFRVENALTRTAFLDDVPG-DFMTQVFEMEPGELRVIPGQGAA--FIV 552 Query: 575 KVTNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ Q KD + L Q + +++ D+ + +++ T+ + Sbjct: 553 RLDEVLPPAETDEQRQMKDAVAAQLNQALAQNIFDAYVRDAQTRARPTLDQRALN 607 >gi|21230443|ref|NP_636360.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21112006|gb|AAM40284.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 656 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 110/672 (16%), Positives = 233/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAML-PEPTADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + +K G F LA+ + L K + Sbjct: 298 AGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLSWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + I +L Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGIAANPAVLRS 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V +T + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQTLPLDKVREKVIAAVHADRTKKSAV 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQSLAAAEKLQVTPIPGLPRT---APVPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + G Y VF V+ S G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELTGGRYAVFVVSKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|329908176|ref|ZP_08274836.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae bacterium IMCC9480] gi|327546752|gb|EGF31691.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae bacterium IMCC9480] Length = 642 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 105/638 (16%), Positives = 235/638 (36%), Gaps = 31/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E +R R + + L+++ F + GL + + VG Q + + + Sbjct: 1 MFEFVRTHKR-LMQFLLLLIIVPSFALVGLGSYKSFGDAENVIAKVGGQPITQVEYDAAQ 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ Q G + + + + ILDNL++ L L + I Sbjct: 60 REQMARFKQMFGAQFDPKMFDTPEARQGILDNLIAQRALSVEAARQHLSVADAALQQSIT 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 G D KF + + S LA +G+ Y + ++ + + Sbjct: 120 GIAGLVGPDGKFDGERYRSLLAMQGMTPAMYEQRLRQDMAVQQLNSAIQSTAFAPKTVAT 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V ++ A + + +L +++K + PE I Y++ Sbjct: 180 RLSDINDQERTVQELLFKPADYAAKVNVTADMLKAYYDKNARQFEVPEQATIQYVVLSSD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288 +I +++ E+ YE+NK+ + E R ++ +K +A++ Sbjct: 240 ALASQIAVTDQEVADFYEQNKKSFGVDEQRRASHILINLKKGASATEKAAAKAKAEQVLA 299 Query: 289 SLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++K F ++A+ +QG + L F K + +++F L K + + ++ Sbjct: 300 QVRKAPGDFAKIAKASSEDQGSAPEGGDLDFFGKGAMT-PPFEEAVFKL-KLNEISGLVE 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FG+ I V+ IKP+ + +VK I ++ KA+++ E + + S+ Sbjct: 358 SDFGFHIIEVTAIKPASFRTLDQVKPQIVADIKRQKAAKQYSEAAESFGNTVYEQADSLK 417 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460 ++ + K+ + + + A+ + L VF D +K +T + + Sbjct: 418 PVADKLKLKIETVSGLTRTPNPLAAP--TALFNNAKFLNAVFADDTLKNKHNTEAIEVAP 475 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + M +I + P R EV V++ ++A ++ KA + L K + Sbjct: 476 STLMAGRIVDYKPVGKRPFAEVEAVVREKVIAEESA-VLAKKAGEAKLAALKTADDASGF 534 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 G S + +N F + + P + Y + KV ++ Sbjct: 535 GVAKVVSRSKNDGMN-----GPGFDSVMKADISKLPAIAGADLSRQGYAVYRISKVAQAE 589 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + + + + + + + + LK + V + Sbjct: 590 KIDAPRRLEEQQQIANALAQQEMIAYLNVLKEKAKVKI 627 >gi|163856532|ref|YP_001630830.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii DSM 12804] gi|163260260|emb|CAP42562.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii] Length = 653 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 109/664 (16%), Positives = 235/664 (35%), Gaps = 47/664 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E++R R W+ I L+++ F + G+ + + +V Q + S F + Sbjct: 1 MFELLRNH-RRWMQFILLILIVPSFFLVGIQGYESFIRREPELATVAGQPITRSEFDMAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + + +++L+ L+ L Q D G + IA Sbjct: 60 RNQLEQFRQRLGSQFDPALVDTPAMREQLLNQLIDQRLLAQVAIDNRFSVSDGTLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G+ + + L+ V+ + ++ Sbjct: 120 AIPQVQD-NGRFSPERYRQVLAAQGMTPTSFEAGLRRDLAVGRVLEPINQSAGAPDAVVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ K PE Y++ D Sbjct: 179 SLESALTQQRTVQLRRFAAADYRAQVSVSPEDIQTWYDGNKQQLTVPEQVTAQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287 + +++ +++ + YE+NK ++ PE R ++ A E A Sbjct: 239 AATQGVQVKEEDIASYYEQNKNRFGQPERRRASHIMIELPAGASEDARKAAHAKAEALAK 298 Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ +F +LA ++ G + LG + + L S+F LAK + V+ Sbjct: 299 QAAADPAQFAELARANSQDAGSAGKGGDLGWLAPGMLAGP-LEKSVFGLAKD-QVSGVVE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402 G I V+ I+P+ EV+ +I ++R A+ + E +L E + S+ Sbjct: 357 SPSGLHIVKVTEIQPAAIKPLAEVRDEITAEIRKQIAATRFSEMATKLTEIVYDQRDSLQ 416 Query: 403 EISRREKIVSIDLPLVDFAGKDV------------KGKEVAAIPYKEQLLFRVFGKDDPL 450 + + + G ++ P Q LF D Sbjct: 417 PAADALGLKLRTASGITREGLLPADQAGADAAASGPDAQLLDNPRVRQALFSPDVLRDKQ 476 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + + L + + V++ + P L++V ++++ + AE + + Sbjct: 477 NSG-VIELSPDTMLAVRVAQVQPEHVPPLDKVSANIRERLLDERAAEAARKAGTAALDGW 535 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGL 569 + + + ++R + D ++ P E + + +G Sbjct: 536 KADPATLPE-------GFGASAVVSRQ--QPGQLSQDVLNAAMRLPAEPLPAYAGVNDGN 586 Query: 570 SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 YVV ++ + G +D L + +V+ L+ QY V + Sbjct: 587 DYVVVRLDKVEAGASEASARDLLARQLGAAWGQAEDAAVLKVLREQYQVKILPEAASALQ 646 Query: 628 DGEK 631 ++ Sbjct: 647 GQDQ 650 >gi|254486655|ref|ZP_05099860.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp. GAI101] gi|214043524|gb|EEB84162.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp. GAI101] Length = 614 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 127/618 (20%), Positives = 269/618 (43%), Gaps = 30/618 (4%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 I + +L + +G A+ S++ +VG + + + +Q++ I + G Sbjct: 13 VWILMGMLILGLGGFG---AVNFNGNVSSIGTVGDKDISVDQYARELQQQIRAIEGQTGE 69 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ ++A+++GLD+ +L LV LD ++G+ + I P F G D F Sbjct: 70 TLSFQQAQAIGLDRAVLQRLVRLRALDNETAEMGISIGDENLRERIIDIPSFQGIDGNFD 129 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + L + G++E E+ + +R+ + G GG+ ++ F E RS Sbjct: 130 REGYRFALQQAGLSEAEFETSLREEAARSLLQGAISGGVTMPDVYAQTLVNFVGEKRSFT 189 Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + L + A P++A L +++ +N+ P K I+YI+ + ++EI+ DE Sbjct: 190 WAALTEDDLQTPLAAPTDADLQAFYDANPENFMLPASKSITYIILTPQDVLDEVEITQDE 249 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDIS 311 L+ Y+ + PE R VE+LVFPN++ A+ A +L+ G F L +++G +L DI Sbjct: 250 LRKAYDDRAADFIQPERRLVERLVFPNEEAANMAAAALEVSGTTFDALVQDRGLTLEDID 309 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 +G S+ + + +++F+ A+ GD + + G + V+ I PS +F+E + Sbjct: 310 MGDVSRLELG--AAGEAVFA-AEAGDVVGPLPSNLGPALFRVNGILPSLNTTFEEASPAL 366 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + +A+ V+ + L++ LA G ++++++ K + L ++ +G +A Sbjct: 367 QQDLAGDRAARLVEVRAQELDDQLAGGATLEQLAEETK---MTLGTTEWTADSDQG--IA 421 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 A + D P L DGS +++ + P R E+ V W Sbjct: 422 AYESFRAAAAALTDGDFPK----IDQLEDGSVFALRLDGTKPERPNPFEDARASVAAAWT 477 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + + ++++A + + G +F D LG + + R + +++ Sbjct: 478 ADQLLQALTAQA-ETAQSALEGGSDFAD----LGLTPTDQQNLTREAVISGA-PDGLMTE 531 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSV 606 VF ++ + S + +V + E+ D+ + L Q +++D+ Sbjct: 532 VFDAAPGDIRTIAGTD--SVAILRVDSITAAEESEQTRQLLDQLTTQLNQQLSQDVFALY 589 Query: 607 IAYLKSQYSVTVHDNLIQ 624 + + + + + I Sbjct: 590 SSDVVRRTAPMIDQQAIN 607 >gi|309781952|ref|ZP_07676683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA] gi|308919296|gb|EFP64962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA] Length = 635 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 92/640 (14%), Positives = 232/640 (36%), Gaps = 43/640 (6%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + + L+++F F+ +G+ + S V + + + +++ + Q +G Sbjct: 1 MFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARVREQTERLRQMLG 60 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129 + + + + +LD ++ L + L + ++ I + P D Sbjct: 61 AQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTILQIPAVAALRKPD 120 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 F + +V L+ + + ++ + LS+ + V L+D+ + + Sbjct: 121 GSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKSLVDRLIQVRDQQ 180 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R V ++ A + + + +++ ++ + PE + Y++F E K+I ++ Sbjct: 181 REVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVFSGEEMMKQIPVT 240 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQSLKKG-KKF 296 ++L+ Y++N ++ + E R ++ +A+E ++K F Sbjct: 241 PEQLKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEEVLAEVRKNPASF 300 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA++ LG K +++F+L + GD + V+ FG+ I Sbjct: 301 ADLAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISDVVQSDFGFHIIK 359 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411 + +K + VK ++ ++R A++K E + S+ ++ + K+ Sbjct: 360 LEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSDSLKPVADKLKLQ 419 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIK 469 V + +++L +F D + +T A+ G + + + Sbjct: 420 IQTADNVTRTPSPAQSGSPIG---NDKVLKALFADDVIKNHRNTAAIQVGPTTLVAARAA 476 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 E PA +KL +V VK + A ++ KA + L K+ + G Sbjct: 477 EYRPATVKKLADVREQVKAKVIAEQAA-ALAKKAGEEKLAAVKQSNSADGFGA------- 528 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG---PV 584 ++R + ++ + + + Y ++++ Sbjct: 529 -VQTVSRQQAQGT--PPAALTAILRADATKLPTTIGVDLGAQGYALYRINKVLPPANVDE 585 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + L Q + ++ LK++ V ++ + + Sbjct: 586 TRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 625 >gi|325274293|ref|ZP_08140404.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51] gi|324100576|gb|EGB98311.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51] Length = 623 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 240/637 (37%), Gaps = 36/637 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKSIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKLLREEALKGLISRKLLLQGAEDAKFAFSDAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ D + + + G ++ +D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFRDMLAEEMLIGQLRTGLAGSSFVTDQQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA S+A + ++++ + +P+ I YI Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDAEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 +++++++EL+A+YEK E R ++ + A+E Q L Sbjct: 238 AYFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + G F+ + D + ++++ L + G + + FGY Sbjct: 296 KGENFATLAKEFSQDPGSAGNGGDLGFAGPGVYDPAFEEALYKL-QDGQVSAPVRTQFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + ++ ++ + K+L++ + + + ++ Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 + G G+ + A Q F D+ + + L + + +++ Sbjct: 415 NLKVHTSAPFGREG----GEGITANRSVVQAAFSEEVLDEGAN-STAIELDPETTVVLRV 469 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 KE LE V ++++ K E+ +KA++L+ + + G Sbjct: 470 KEHRKPEQLPLEAVAQNIRQHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGW 527 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTNSK 580 T + R + + + + +F K P+ + S VV + V Sbjct: 528 KTHEAVTRGE---EGIDPEELQALFRLAKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGT 584 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + + L++ +T Sbjct: 585 TATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621 >gi|86138848|ref|ZP_01057420.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193] gi|85824495|gb|EAQ44698.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193] Length = 614 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 131/634 (20%), Positives = 260/634 (41%), Gaps = 32/634 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+K S T+V I + +L V +G + S+S V VG ++V ++ Sbjct: 1 MATGIKKLSNTFV-WILMGLLIVGLAGFGAVNFSSSMS---AVALVGEEEVTVDEYLREM 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + + G ++ + + GLD+ +L L+S A +D ++++G+ + E+A Sbjct: 57 QREQRALQAQGGQALSLSQMAAFGLDQAVLGRLISIAAIDNEVKNLGISVGDDNLRQELA 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F F + L +NE ++ + +RT V G V G + + L Sbjct: 117 EIPAFQDPSGNFDRQTYSFALQNANLNESDFEADLRRESARTLVQGAIVVGAKMPDTLTK 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + RS Y+ + + P +AVL ++E D++ PE KRI+Y Sbjct: 177 TLTSYIGARRSFSYVPFSPDQISLIQVVPEDAVLMAFYEANADDFTLPETKRITYARLSP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298 +E+ + L+ Y E+Y E R VE+LVF + A +A L G F Sbjct: 237 DMILDTVEVDEEALRTLYSDRSEQYQIAERRLVERLVFADDTSAADAKAQLDVAGTTFEA 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L E +G +L DI LG ++ ++ D + A A+ G + G + V+ Sbjct: 297 LVEGRGLALQDIDLGDVTQSFLGDAAEAVFA---AEVGTIVGPLPSDLGPALYRVNGQLE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + +F++ + ++ +++ +A +++ + + + LA G ++++++ D+ + Sbjct: 354 ARHTTFEQAEPELRDELAADRARRLIEQQAEEINDLLAGGATLEDLANES-----DMEVA 408 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G+ + A V +D P + L DGS +++ E +P R Sbjct: 409 SLGWSGETGEGITAYEGFRTAASLVTVEDFPTA----EFLGDGSLFALRLDEILPERPEA 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 E+ V W+ + A + ++A L+ ++ G G+ + + R Sbjct: 465 FEDAKAKVLAAWEADRVATALQAEAEALLATVTQTGDFPE------GSQVQQETGLTRTA 518 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISY 593 + D ++Q+FS +K E G VV ++ E + Sbjct: 519 YLDNT-PADMMNQIFSMEPGDLKVIKGEAGT--VVVRLDAVLAAEENEEMQLLAKALSTQ 575 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L Q +++ L + I+ + + + V + L Sbjct: 576 LDQAVSEALFTAFISDAQLRAAPRVDQQALNAVL 609 >gi|325982743|ref|YP_004295145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] gi|325532262|gb|ADZ26983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] Length = 627 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 102/641 (15%), Positives = 246/641 (38%), Gaps = 36/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M +++ + R V ++ L + +PF+ WG+ + V V +++ + + Sbjct: 1 MFDLVNRKKR--VVQVILGLAVLPFMFWGVESY-RNDGSEGYVAVVEGEEISRREYEQAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G +S + + +L+ L+ L Q G ++ I Sbjct: 58 RDHHERMRAMLGANFDSAMLDTSEVRSSVLERLIQQRLLYQEAVKNGFVVLDSQLIKTIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F K+NKFS + L +G+ + L ++ + + Sbjct: 118 DVQAFQ-KNNKFSKQQYEELLRNQGLTPVIFESRVRNELLLQQLLDGYSENAITPRTTTE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R + + + A P A ++ ++E++K ++ PE ++ Y++ + Sbjct: 177 RVQYLSEVRREISQSKITPDQFLSQAIPEEADISAYYEQHKTDFDLPERAKVEYLVLSLE 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288 + K +S++ + + +++ ++ E R ++ +++A + Sbjct: 237 KVAKNEFVSDEAINTYFLEHQSEFGQSEERKASHILISVSPDAPEEEKQMAREKAKRILE 296 Query: 289 SLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +K+ F ++A+E LG F++ + S D IFS+ + + + ++ Sbjct: 297 QVKQNPDQFAEIAKEHSDDPGSAMRGGDLGFFARGVMVK-SFEDEIFSM-QLDEISDIVE 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FG I ++ IK +EV++ I N +++ E + + G S+ Sbjct: 355 TDFGLHIIKLTAIKEERHPDLEEVREQIENTLKVEMVESVFGEIVEDFSNVVYEQGESLQ 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460 + + +++ + K+ AI E LL +F + + +T + + Sbjct: 415 AAAEKFELIIEKSDWITKDSKEP------AILANENLLSAIFSDEVISNNRNTEAIEVNP 468 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 +++ +I E PA + L V ++ + K ++ + ++ + G+ D+ Sbjct: 469 DTFVSARIIEYKPATSQSLAVVKDEIVEKLKKEMAVSMAVAEGQEKLVRL-QAGEVLDDV 527 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 + A L++ Q +D+E ++V PV + P + KV Sbjct: 528 AWD-DAQLISYMQPQGLDHE--VLRAIFRAEVDELPVYVGAVKPEGGFNLIRISKVIEPD 584 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + F L QM+ ++ + S +A ++ +Y V + N Sbjct: 585 SDEKTPPENFAKQLQQMITQEEISSYLAAIRQRYDVKIIQN 625 >gi|188992771|ref|YP_001904781.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris str. B100] gi|167734531|emb|CAP52741.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris] Length = 656 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 110/672 (16%), Positives = 231/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAML-PEPTADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQ-----------SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + + G F LA+ + LG K + Sbjct: 298 AGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFAM-KAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + I +L Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGIAANPAVLRS 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V +T + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVREKVIAAVHADRTKKSAV 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQSLAVAEKLQVTPIPGLPRT---APVPTPAANRAIFSAPRPNE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 G Y VF V S G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSAGKVELTGGRYAVFVVGKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|160898321|ref|YP_001563903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] gi|160363905|gb|ABX35518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] Length = 631 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 120/646 (18%), Positives = 243/646 (37%), Gaps = 48/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ +V + +++ F+ G++ F+ S S V V ++ + + N+ Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SVIVARVDGHEIKQADWENAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + + ++ + S L+ +V L ++ + L A ++ + Sbjct: 59 RMESDRLRAE-NPNIDPKLLDSPQARYATLEKMVRDQVLAAAVQKMHLAASDAQLVRTLQ 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + + +G+ + + + + LS V+G G ++ Sbjct: 118 EIPAIAALKKPDGSMDAEAYRALVGSQGLTPEGFEANLRRELSMNQVMGGVTGTAFATDT 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + QA ++ R V + P+ A L +++ + ++ E ++ Y+L Sbjct: 178 QVKQAIDALYQRREVQVARFEASAYASKVQPTEADLKAYYDAHTSQFQQSEQAKVEYLLL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-- 295 DV E I +S D++++ Y +N E+ PE R ++ K+A A Q K K Sbjct: 238 DVPSIEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKAEE 297 Query: 296 -----------FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F +LA+ + G + S LG F + + D+ F + K GD + Sbjct: 298 LLAELRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKP-FEDAAFGM-KVGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+H FGY I + +IK SF++++ + +++ +A K E + + Sbjct: 356 VVHSDFGYHIISLVDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAELAEGFSNAVYEQSD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V G V + L +F D +K +T V Sbjct: 416 SLQPVAEKFKLTVQKADHVTR----QPGPNVKGPLANPRFLEALFSSDSLNNKRNTDAVE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 L + ++ E PAR + EV ++ + K+AE + + + Sbjct: 472 LGSNQLVAGRVVEYTPARTLPMAEVGDKLRTLYVAQKSAELAKADGEAKLAAWK------ 525 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 K A L I+R E + + + P + + + Y V K Sbjct: 526 ---AKPDAAQLPAAKVISRDQPEGQ--PREVVDSALRAPTAQLPAWTGVDMGAQGYAVVK 580 Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLD---SVIAYLKSQYSVTV 618 + P + + + + + LK Q V + Sbjct: 581 INRIVERPADDAQAAAAQKQDFLRSSAVAEAMAYYELLKKQLKVQI 626 >gi|258405892|ref|YP_003198634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium retbaense DSM 5692] gi|257798119|gb|ACV69056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium retbaense DSM 5692] Length = 626 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 102/645 (15%), Positives = 249/645 (38%), Gaps = 41/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W K ++ + F+ WG+ + ++ V V + + F ++ Sbjct: 1 MLDAMRKNAQSWAIKFLFALIILVFVFWGVGN--LGNDQATVVAEVQGEAILIRDFQQAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + +K ++ E + L +++L++L++ L + + +GL V + Sbjct: 59 QRTVENLRRKQPD-ISREDFEQMQLKRQVLNDLITSQLLFREAKKLGLAVTAPEVRQYVQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P+F D +F + L + ++ T+ L + S Sbjct: 118 QMPVFQNADKQFDPSRYEQLLRANQLTPAQFEADLTRSLLTNKIQRAVKLPASVSEAQAK 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E ++Y + + P +A P+ + ++++ + ++ P + Y+L Sbjct: 178 DLFAFSQEKARMEYALFAWQDQPGLA-PNEEAVKHYYQENQKQFQRPARMEMDYLLLTPE 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 +S++E++A YE N ++ E ++ +++A + Sbjct: 237 GLAAAQPVSDEEIKAYYEANPGEFERQEELKARHILIEVPEGADDQQVTEAREQAQALVE 296 Query: 289 SLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L+ G +LA E S LG F++ + + A + G+ + + S Sbjct: 297 RLRDGADLAELAREYSDGPSSAQGGDLGWFARGEMVEAFEAAA--FALDTGEISDPVRTS 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG+ + V + KPS T F+EV+ +I ++ KA++K+ + + + G S+ + + Sbjct: 355 FGFHVITVEDRKPSGTQPFEEVQDEIRQEIGADKAAQKMSDLLDEALDLILSGKSLKDTA 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 +I + +G + + I ++ +F D + L D Y+ Sbjct: 415 ATLEI------PLRHSGPFTQAQGPEGIELDKEQRETLFTLTPGEVTDTPLLL-DNGYLI 467 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + + PA+ R+L+ V ++ K + E+ + A ++ ++ Sbjct: 468 AKQTDFSPAQPRELKAVRDQIETTLKREQGLEKAKAAAENVLARLEAPDQDLE------- 520 Query: 526 ASLLTTNQI-NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583 T+ R + VF+ P + YV+ ++ Sbjct: 521 RETSTSEPFGRRGFIPGLGMNPQLVESVFNAEQGQWLEKPYKVQQGYVLARLAERVAPDM 580 Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624 +++ ++ L Q + L + + L+ + V + + +++ Sbjct: 581 SKWEEQQSLWVGQLQQSRKQALFQAYLTQLREKAEVKIVNPGVLE 625 >gi|261868689|ref|YP_003256611.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414021|gb|ACX83392.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 615 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 119/636 (18%), Positives = 247/636 (38%), Gaps = 37/636 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS W +K + V F+I ++ L+S SS V +++ +++ Sbjct: 3 MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSS-AAKVNGEEIS----QQAFQ 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + SQ + L +++L +L+ L Q+++D+ L R+ EI Sbjct: 58 NQYNIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVT 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +P F + KF + ++ L GI+ + Y + + L + + + Sbjct: 118 TPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALHLEQLQSGLGITAFTVPVQQEA 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +F+ R V L+ A S + +++ +K ++ PE ++ Y+ Sbjct: 177 LTKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPESVKVQYLDLSGAN 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 EK I ISN E+ Y+ NK ++ + + + + +++A + +Q L+ G F LA+ Sbjct: 237 MEKNINISNVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGADFATLAK 296 Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L S P V D+ +L G F+ + Y I V K Sbjct: 297 NHSIDPISAEKGGDLSWVSAGEFPKV-FEDAANAL-DVGKFSQPVKLDNSYHIILVEERK 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 S + + V+ I Q+R + + KR+ E +S + + + Sbjct: 355 DSAVLPLERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAFEDSSSLNAAAEAG--GVKVQE 412 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475 + + K++ A ++ +F D S +++ D + +++ E Sbjct: 413 TGYFSR----KDIPAALNYPNVVSAIFDSDISQGGSNSEPMSIGDQHSVVIRVLEHKAES 468 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + L+E D+ K K V ++AN+LV E + GK + T + Sbjct: 469 VKSLDEAKNDITARLKRQKAEAVVLAEANKLVQELT-AGKTVDSL------KFGATQSLV 521 Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKDK 589 +N + + VF+ P V E VV + G QE+ + Sbjct: 522 FAENNDPML----YNAVFAMPKPTEGKAVYQATKETKGDIVVIALDKVVDGALSEQEQQQ 577 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 F L + L ++++ L+++ + ++D+++ + Sbjct: 578 FAVQLARADQIALQNNLLNALRAKAKIEINDSVVNQ 613 >gi|46579478|ref|YP_010286.1| peptidyl-prolyl cis-trans isomerse domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602972|ref|YP_967372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|46448892|gb|AAS95545.1| peptidyl-prolyl cis-trans isomerse domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563201|gb|ABM28945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|311233293|gb|ADP86147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris RCH1] Length = 629 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 117/644 (18%), Positives = 238/644 (36%), Gaps = 38/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML++IR +++W K+ ++ V F+ WG+ +S V +V ++ + FI + Sbjct: 1 MLDVIRGHAQSWGVKVAFGLIIVVFVFWGVGS--MQEGPTSVVATVNKKPIVIRDFIREY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ + + V ++ + +GL +++L +V+ + Q E +G+ + I Sbjct: 59 ERQVESLRTRFPG-VTADELKKLGLKRQVLQQMVAETLMQQEAERLGITVTPYELRAAID 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F KF + + L + + + K + + + G ++ Sbjct: 118 QIPAFRDASGKFDPETYKKVLKAQQTVPGRFEEGVRKDMLGRKMRALVTAGAVVTDAEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E RS+DY++ A A +A L W++ K + P+ R+ ++ Sbjct: 178 DMFTYAQEKRSIDYVLFPLDEYAAAASIEDAALQAWYDSNKARFTEPQKVRLDFVRISAE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADE------------AF 287 I+I + A Y +N YF PE ++ + ADE A Sbjct: 238 SLAAGIDIPETAIAAFYAENAASYFMQPERVRARHILVRVPEGADEATVRKAEERIADAA 297 Query: 288 QSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K GK F +A E G + + LG F + + D+ F L K G+ + + Sbjct: 298 AQIKAGKDFAAVAAKVSEDGSARNGGELGWFGRGEMVKP-FEDAAFGL-KPGEVSAPVRS 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + + EV+ +I ++ KA EKV + E ++ G S+DEI Sbjct: 356 QFGFHLIKSEGHEAQRQKALDEVRNEIRKRLAEEKAIEKVHDSLDNALELVSAGKSVDEI 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + + K+ + A + K + F D + +G Y+ Sbjct: 416 AAQLKLERQTSEPLTRESAS------ATLGLKPADVTLAFSAPAGTVIDTPLE-AEGGYI 468 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++ E P R +EV V + + A A++ + G + L Sbjct: 469 IARVAEVAPERIPGFDEVRDKVVVAVREDEGARLALKAADEALA-----GVRDGQLPGAL 523 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 + + T+ R N ++ + V VV + V P Sbjct: 524 ASRVKTSPLFGRDGNIPGLGVDPALAAAAFSAEKGVWSDKAHATPQGVVVLRVHEVVRPT 583 Query: 585 QEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + +++ + + L ++ V V D + Sbjct: 584 DAQWQAVASTVKETILAAKREEMFRAFLTTLHAKGKVEVKDASV 627 >gi|73541077|ref|YP_295597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] gi|72118490|gb|AAZ60753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] Length = 649 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 115/647 (17%), Positives = 235/647 (36%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + V++F F+ +G+ + S V V + + N Sbjct: 1 MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDVAKVDGRAITVQEVDNVV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + Q +G + + L K + D L+ + + L + R++ I Sbjct: 60 REQSERMRQMLGASYDPRQFEGPMLRKNVTDQLILQRVVANEVAREHLTVSNARLYEAIN 119 Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P +D +V LA +G+ +++ L+ + G Sbjct: 120 SIPAIAQLPRKQDGSVDDKAYVQLLAAQGMTPEQFDARMRFDLATQQLGTSIAGTAFVPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LLD+ + R V ++ + P A L ++E ++ + PE ++ Y++ Sbjct: 180 SLLDRLIAVRDQQRDVQALLFKPADYASKVQPDAAALKAYYESHQSAFSVPEQAKVEYVV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294 +S +EL++ Y+ N ++ + E R ++ K+ A + K K Sbjct: 240 LSGDALAASQAVSPEELKSYYDSNIARFRTEEQRRASHILIAAPKDGPAAARQAAKDKAG 299 Query: 295 -----------KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 F +A +Q + LG + D++++L K G + Sbjct: 300 KLLEELRKHPDTFADVARKQSQDPGSAEKGGDLGFMGHGALVKP-FEDAMYAL-KDGQIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ +GY I ++ IKPS T V+ ++ ++R A++K ED + Sbjct: 358 DVVETDYGYHIIKLTGIKPSETKPLDAVRPELEAELRKQFAAKKYAEDADAFGNMVYEQA 417 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S+ + + K+ V G+ E++L +F D +K +T A+ Sbjct: 418 DSLKPAADKFKLTIQTADNVTRQPNPALGQ--NNPLNNEKVLKALFSDDAIKNKRNTEAV 475 Query: 459 PDG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 G + + +I + PA RK EEV V++ + + AE V K Sbjct: 476 QVGPTTLVAARIVDYRPATVRKFEEVEAKVREGYIAQQAAELARKDGEARVEALKKS--- 532 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 D + GA ++R E + + + + Y V+ Sbjct: 533 --DSAQGFGA----VTMVSRAKAEG--MEPKAVEAIMRADTSKLPAVVGVDLGANGYAVY 584 Query: 575 KVTNSKVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 ++T ++ L+Q+ + L + LK++ V + Sbjct: 585 RITKISQPQQANEGQRQAEAQQLSQLAGQTELGAYYESLKARSKVKI 631 >gi|330808576|ref|YP_004353038.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376684|gb|AEA68034.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 623 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 97/639 (15%), Positives = 225/639 (35%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ + G + + S+ V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFKATTNSNEAAKVNGENISQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++ L L L+ L Q D + I Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLRDSALKGLIDRKLLLQGAHDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS + F + + G + ++ + + + G ++ + Sbjct: 121 QTPEFQ-VDGKFSPERFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGLAGSGFVTDAQVL 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ LN + PA ++ + +++++ + P+ I Y+ Sbjct: 180 AFARLEKQTR--DFATLNIKADPASVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + +++LQA Y+K E R ++ + + +E L Sbjct: 238 SFFDQVSVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKVTEAQAKAKIEEIQARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G ++ + D ++++L K + + FG Sbjct: 296 KGESFEALAKEFSQDPGSANNGGDLGYAGPGVYDPEFEKALYALNKD-QVSAPVRTDFGL 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ +F +K + +++ + ++ E K+LE+ + + + ++ Sbjct: 355 HLIKLLGVEAPEVPTFASLKDKLTRELKTQQVEQRFVEATKQLEDASFEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 K+ G + I ++ F + + + + L + + + Sbjct: 415 KLTVHTSAPFGREGGE-------GIAANRAVVTAAFSPEVLNEGANSTAIELDPETVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 + KE LE V ++ + ++A++L+ G Sbjct: 468 RAKEHRKPEQLPLESVAGPIRAQLTKEHASAAAKTRADELIASLRDGKVALDKPVDGQG- 526 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVTN 578 T R + + +F P K P + +G VV V Sbjct: 527 -WKATQAATRN---QEGIDPAVLQALFRMPKPESKDKPTFTSVTLPDGSLMVVRLNGVNE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +EK ++ YL + + + L+SQ + Sbjct: 583 AAAPTDEEKAEYRRYLASRVGQQDFAAYRKQLESQAEIK 621 >gi|332290245|ref|YP_004421097.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179] gi|330433141|gb|AEC18200.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179] Length = 621 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 103/641 (16%), Positives = 247/641 (38%), Gaps = 37/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R + + V K+ + V+ + F++ G++ L S +S +V ++ F + Sbjct: 1 MMEKLRGYTHSMVWKVLMSVIAISFVLSGVAGYLISRQNTS-AATVNGVEISQRLFQQQY 59 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + ++ ++G + + GL +LD L+ L Q+ +++GL + Sbjct: 60 QSQYQQLAMQMGDKFAAVADSAEFTNGLRHSVLDRLIDDELLRQYSKELGLGVGDEAIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F KD +F + V+ LA + +Y + + L + ++G + + Sbjct: 120 AIVMNPAFQ-KDGQFDNAVYQQLLANNNLTPDQYAEIVRQDLVLSQLMGSLLASDFLTEA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + +F+ RSV + A S+ + +++ +K + PE ++ YI Sbjct: 179 QQQQFVKLFFQKRSVRLATFPVADLAAKQTISDQEIEKYYNDHKAAFATPELVKVQYIDV 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + K +++S+ E+ Y+ NK ++ + + + Q EAD+ + L++G F Sbjct: 239 NKDKLAKDLQVSDVEVAQYYQDNKSQFMGQAKQHIAHIQVNTQAEADDIYNKLQQGADFA 298 Query: 298 QLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA++ +++ L +P ++ G ++ Y I V Sbjct: 299 ELAKKYSIDRLTAVNGGDLSWVVAGQLPKA--FEAAADNTAVGAYSKPTKVDDKYHIIKV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + +EVK I + +R A K K + + S ++ K ++ Sbjct: 357 LARNEATVLPLEEVKSRITDLVRQDLAERKYFSVEKVVADKAFEDQS--GLATAAKEGNL 414 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKES 471 + + +D +V A ++ +F + +++ + + ++ + Sbjct: 415 TVEETGYFARD----DVPAALNFSNVISEMFSPELVQGGMNSQMISVGENHSVIFRVVDY 470 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 A + L E T + + K + LV + + + +NL + Sbjct: 471 KAAGTKPLAEAKTQITALLQREKAENIELDRVKALVAKLQAGDNSAVEFKQNLTTVYAES 530 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKVG--PVQ 585 Q+F+ P+ ++ V + + G + Sbjct: 531 K------------NPALDKQIFAMPLPTAGKPSYHVGVDQNGDIVAIALDKVEDGQLSAE 578 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++ F+S L Q DL +++ L+ + + ++ ++ + Sbjct: 579 QQKAFVSQLMQFRVNDLQATLLKALREKAKIEINQEMLDQL 619 >gi|163746559|ref|ZP_02153917.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus indolifex HEL-45] gi|161380444|gb|EDQ04855.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus indolifex HEL-45] Length = 614 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 128/594 (21%), Positives = 253/594 (42%), Gaps = 27/594 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 ++ SVG + + + +QE+ I + G ++ RA+ +GLD+ +L +V Sbjct: 33 SGNLRSIGSVGDKSISVDQYARQLQQEIRAIEAQTGESLSFARAQEMGLDRAVLQRIVRN 92 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 LD ++G+ + EI F G D F + + L + G++E E+ Sbjct: 93 RALDHEAAEMGISIGDATLRDEIVAISAFQGIDGNFDREGYRFALQQSGMSEAEFETSIR 152 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215 + +R + +GG+ + + E RS + L+ + +A+P+ L Sbjct: 153 EESARGLLQRAVLGGVSMPDTYARTLVDYVAEERSFTWARLSADDLDTPVAEPTEEELQA 212 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ D++ P K I+Y + ++E+ +EL+AEY+ +Y PE R VE+L Sbjct: 213 YYDANADDFMLPASKSITYAWLRPEDLLDEVEVPEEELRAEYDARSSEYDQPERRLVERL 272 Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 VF NQ+ AD+A +L+ G F L EE+G +L+D+ +G +K + D++FS A+ Sbjct: 273 VFANQEAADQAAAALEVDGTTFEALVEERGLALADVDMGDVAKSDLDGA--GDAVFS-AE 329 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + S G + V+ I P+ V F+E ++ + + I++A+ V+ + +++ Sbjct: 330 SGAIVGPLPSSLGPALFRVNAILPAQNVPFEEAREVLEETLAISRATRAVEARAQEIDDR 389 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G +++++ + K ++L +D+ G +AA + + P Sbjct: 390 LAGGATLEDLGKETK---MNLGTIDWTEDSSDG--IAAYGAFREAAAGLSADAFP----Q 440 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 L DG +++ E+ P R + +V+ W+ + E +++KA L + + G Sbjct: 441 IDQLDDGGIFAMRLDETKPERPNPFDAARAEVEAAWRNAQIVEALTAKAENLTADLADGG 500 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 + G + R + + QVF V P G VV Sbjct: 501 DF-----EAAGLEPQLGEGMTRSSYVDGT-PDTFMDQVFDLDEGGVAVLPA--GDHVVVL 552 Query: 575 KVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 +V + ++ D+ L Q + + L D + + + Sbjct: 553 RVDSVTAAGENDQTQALMDRLSQQLDQALAQGLFDIYSNAVMRDADPQIDQRAV 606 >gi|78356452|ref|YP_387901.1| peptidyl-prolyl cis-trans isomerse domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218857|gb|ABB38206.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 629 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 121/645 (18%), Positives = 251/645 (38%), Gaps = 37/645 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ +++W KI ++ + F+ WG+ S+ V VG+ + ++F + Sbjct: 1 MLDSIRQNAQSWGVKIAFGLIIIVFVFWGVGS--MDNQPSNVVAKVGKTSITVNAFAREY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ ++ + V SE + GL ++L+ ++S L Q E GLE + IA Sbjct: 59 EQQVELVRAQFPD-VTSEDLKQAGLKMRVLNQMISEVLLVQQAEKQGLEVSPAELKLRIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F+ D F + + LA +G Y D + + + + Sbjct: 118 EIPVFNDADGNFDGERYKQVLAAQGTTPGAYEDKIRRSMLAQKMRDFITMPAAVTAEEAK 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E RS+DY++ + P ++ ++++ +NY+ P + Y++ Sbjct: 178 AMFLYSAERRSMDYVLFAAENYLDQVKPGEEQISAFYKQNIENYKVPPRVTLQYVMITPA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 +S+D + A YE NKE + E ++ +K+ +E ++ Sbjct: 238 ALADGASVSDDRIAAYYEDNKESFRQEERVHARHILVLADAGASEEKVAAAEKKINELYE 297 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 ++KG F ++A+E + S LG F + + + A G T + Sbjct: 298 RIRKGADFAKVAKEASEGPSAPLGGDLGWFGRGQMV-PEFEQAA-FAAAAGQVTAPVRTQ 355 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG+ I V + + + EV +I++++ A EKV E L G + ++ Sbjct: 356 FGFHIIKVEEKENARIRTLDEVHDEISHRLAEEAALEKVTPTLDAALEALLAGEDLPAVA 415 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 R + D +G+ + + + + + +F + D + + +G YM Sbjct: 416 ERMHLSLRD------SGQFTRAQATGLLGVEPASVELIFTTPEGSVIDTPMEV-EGGYML 468 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ S R+L+ V DV K + + + A + V +G + Sbjct: 469 AKVVSSKEETYRELDVVKADVIARLKQQEAMKLAADAAREAVAALKNDGSLPQSAA---- 524 Query: 526 ASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 A + + R D S +F + + VV K Sbjct: 525 ARVKRSEPFGRQGFIPGVGQAPDVTSAIFKAADDAWIAEAFQTPTGAVVAKRAAVLTPDE 584 Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT-VHDNLIQ 624 + KD+F+ + Q ++L + + L ++ V V++ +++ Sbjct: 585 TQWAQVKDRFVDAMLQSKREELYRAYMQDLLTKTKVELVNNKILE 629 >gi|91793843|ref|YP_563494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella denitrificans OS217] gi|91715845|gb|ABE55771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella denitrificans OS217] Length = 625 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 110/636 (17%), Positives = 234/636 (36%), Gaps = 35/636 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ VAK LV++ F G+S L S V V +V S ++ Sbjct: 1 MLEKIREGSQGVVAKGILVLVIFSFAFAGVSSYL-GTSTDLPVAIVNGDEVSTSELEQAF 59 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E I Q++G + ++ G+ + +L+ LV +DQ +GL ++ Sbjct: 60 QNERSRIEQQLGDMFETLAADDTYMAGIKQSVLEKLVGDKLIDQAAFALGLRVSDEQIKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F + + + L + G + + ++R ++ VG + Sbjct: 120 AIVSEPAFQ-TDGVFDNSRYQAVLRQLGYQAVSFKNMMRVDMTRRQLLSALVGSEFALDG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 Q + R + Y+ + + A ++ +++ + Y +PE + Y+ Sbjct: 179 EAKQLAEVQGQTRDIRYLTVESNQFLADNSVTDEEAQAYYDANQSQYLSPEKVSLEYLEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK------ 291 +V E K I S +E++A Y++++++Y + E R ++ + Sbjct: 239 NVAELAKDITTSPEEVKAYYDEHQKQYQTAEKRLAAHILINKSDDDAADEAKAAAILAKL 298 Query: 292 -KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G + + + + +++FSL +KG + ++ FG Sbjct: 299 TAGESFEALAKTDSEDKFSGEQGGKLDWFEPGVMAPAFDEALFSL-EKGAHSGLVSTEFG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I + +++ F +V+ I Q++ KA +K +L + D + Sbjct: 358 YHIIKLLDVQAGQLAPFADVEAKIVAQIQEKKALDKFYGLQTKLADTSYEIP--DTLVDA 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 K + + + ++ E + + + + + V+ Sbjct: 416 AKAIGASIKTTELFDRNAVPAEFNQADFIKAAFSDQVLASGM--NSDVIEIAPNHILVVR 473 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 +KE A V + + K E +KA + + + + + A Sbjct: 474 MKEHQAAGTLSFSSVKDSIIARLQQDKAKEAALNKAVEYMAQLKDSTFDASSLSLTTQAK 533 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVF-KVTNSKV 581 L +Q ++ F PV + + +G + ++ KV ++ Sbjct: 534 LGRYSQ---------DVDSGIAAKAFQMPVPAKDAVSIDTAELASGYAIILLDKVNPAEG 584 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 LT ++ +IA LK++ + Sbjct: 585 INDNVLSAMKQRLTPQYSEADYRGLIASLKAKADIE 620 >gi|30250138|ref|NP_842208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] gi|30139245|emb|CAD86118.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] Length = 630 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 94/646 (14%), Positives = 258/646 (39%), Gaps = 47/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + + + V +I L++ +PF+ WG+ S + V +++ + + Sbjct: 1 MFDFV--NKKKTVVQIVLLIAVLPFMFWGVESY-RSAGDAGYAAVVDGEEISRQEYEQAI 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G ++ + + +L+NL+ L + E +GL R+ EI Sbjct: 58 RNQQENLRNMLGEKFDASLLDNPQMRLAVLENLIQERLLRREAERVGLTVLDSRLTAEIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 FH +D KFS+ + L R+G++ + L R ++ G + + Sbjct: 118 NISFFH-EDEKFSYQRYRDLLQRQGMSPAMFEARVAGELMRQQLLEGITGSVIVPRTVAG 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++ + ++ A+P A + +++ + ++ PE ++ Y++ + Sbjct: 177 KVASLSATMYEINRMTISPEQYIDQAEPDEAAIQSYYDSHYQDFTLPERVKVEYVVLSLD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF---- 296 E ++ +IS++E++ Y+++++++ E R ++ +A E ++ K + Sbjct: 237 ELARQEQISDEEIRKYYDEHQDEFGQAEERRASHILLSVPADATEEQKTSTKARAEQILE 296 Query: 297 -------------IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +L+E+ G + LG F++ + D +F + ++G+ + Sbjct: 297 QVRQDPEKLPELAAELSEDPGSAKEGGDLGFFARGLMVKP-FEDEVFQM-QRGEIRGPVE 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FG+ I ++ +K + +VK+ I ++ K +++ E + + ++ Sbjct: 355 TPFGFHIIRLTEVKGADVAGLDDVKEQIRQLLQHQKVADRFGELSEDFSNIVYEQNDTLQ 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPD 460 +++ + +D ++ ++ E++L +F + ++ + Sbjct: 415 PVAQMFNLSVQQSDWIDRNSREP------SVITNERMLQAIFSESAVRDHFNTESIEVAP 468 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 +++ ++ E PA + + V + K +E+ ++ Q + + G+ + Sbjct: 469 DTFVAARVVEHRPASAQSIGLVKDRIVALLKQQLASEQAENEGKQKLAGL-QAGEVDESL 527 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578 +++++ + K + + +F VE + + + Y + ++ Sbjct: 528 ------EWGESSEVS--FAQKKGDNEEILHALFQTDVEKLPAYTGVVTSKGGYDLIRINQ 579 Query: 579 SKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 K + + L Q+ ++ L + IA L+ +Y VT+ Sbjct: 580 VKRPDIGNESSQYNLLFDQLQQIYGQEELSAYIAGLRQRYEVTIRP 625 >gi|113461230|ref|YP_719299.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT] gi|112823273|gb|ABI25362.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT] Length = 618 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 120/639 (18%), Positives = 262/639 (41%), Gaps = 41/639 (6%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS V+KI ++ V F++ G++ +F + ++V V +++ F+ + Sbjct: 3 MEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQYN 61 Query: 62 QELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 E +S+ +G +E A S L ++LD L++ L Q+ +++ L +V I Sbjct: 62 NEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 SP+F + KF + ++ LA GI+ Y + + L + + L Sbjct: 121 VNSPMFQNE-GKFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQL 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ + +F+ R V VL+ + + Q+++ K N+ PE ++ Y+ Sbjct: 180 NELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTR 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++K++IS+ E+ Y+ NK +Y + + + + P ++EA + +L+ G+ F L Sbjct: 240 AIADQKVKISDIEIAQYYQDNKAQYIT---KHLAHIQLPTEQEAQSVYANLQNGEDFAAL 296 Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ + L +P ++ ++ +L G+++ + Y I V + Sbjct: 297 AKLYSMDTLSAPKGGDLDWVVNGMMP-LAFESAV-TLLNVGEYSQPVKVDNAYHIIKVLD 354 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSID 414 +K T +V+++IA ++R + K++ E S++E + K+ +D Sbjct: 355 MK---TRELNDVREEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEEAA---KVAGLD 408 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESI 472 + D+ + E+ + +F D + + D + +++ + Sbjct: 409 IKETDYFSRQDLPPELNY----SHIATAIFNSDLMQGGINSEAINVGDQHSVLLRVVDYK 464 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P R L E D++ K K + + A ++V E + D Sbjct: 465 PEGIRTLAEATADIETYLKRQKAETTLFNMAEKIVAEMN----TITDFKLPSYIHFSEKE 520 Query: 533 QINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVF----KVTNSKVGPVQ 585 D +NK + +FS +N +VF V +S++ P + Sbjct: 521 TWVYRDADNKDPVLGKV--IFSMKKPDPGKTTISVAKNMFGDIVFVELMNVEDSQLTP-E 577 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +K F + ++ L + +I L+ + S+ ++ I Sbjct: 578 QKQLFGVQIAEIKQFSLSNLLIQALREKASIEINTKFIN 616 >gi|52425898|ref|YP_089035.1| SurA protein [Mannheimia succiniciproducens MBEL55E] gi|52307950|gb|AAU38450.1| SurA protein [Mannheimia succiniciproducens MBEL55E] Length = 622 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 114/635 (17%), Positives = 261/635 (41%), Gaps = 29/635 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS + +KI ++ V F++ G++ + + + +S V + +++ +F + Sbjct: 3 MEKMHNASNSIFSKIIFALISVAFVVSGMAGYMVATADTSAV-KINGEEISQQAFQQQYN 61 Query: 62 QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E +SQ++G ++ S GL K +L+ L+ L Q++ D+ L A V E Sbjct: 62 DEYQRLSQQLGAQFSAVADTPEFSEGLRKSVLNRLIDQELLRQYVTDLKLVASDASVKQE 121 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I +P F D KF ++ + L + Y ++ + L + G + Sbjct: 122 IVTTPAFQ-ADGKFDNNAYQQTLRANNMTADMYAEYVREALRLDQLQSGLAGTVLMLPAQ 180 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ + +F+ R+ L A ++ + ++ K + PE ++ Y+ Sbjct: 181 QEEFAKLFFQKRTFRLAKLPLTAEMAKQTVTDQEVADYYNANKSAFMVPELVKVQYLDIT 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 EK +++++ E+Q Y+ NK ++ S + + F + +A +A+Q+L+ G F Sbjct: 241 RAAAEKAVKVTDVEIQQYYQDNKAQFVSKAQDRLAHIQFAKETDALDAYQALQNGADFAA 300 Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ ++ LG + +P + ++ +L + G ++ + Y I + Sbjct: 301 LAKEKSLDKPSAVNGGELGWLNAGDLPK-AFEEAAAAL-QIGQYSQPVKVDNQYHIIKLE 358 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + K S +EVK IA+Q+R + + K++ E S E + K+ ++ Sbjct: 359 DRKEPKAQSLEEVKDLIASQIRQDLLNNQFYSLEKQVAEKAFEDQSSLEAA--AKVAGVE 416 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESI 472 + D+ + K++ A + +F D + + D + V++ + Sbjct: 417 IKETDYFSR----KDIPAALNFPSVASAIFDGDISQGNQNSEPMNVADQHSIVVRVVDHK 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 + LEE ++ K K + +AN+ V E + +GK + Sbjct: 473 AEGTKSLEEAKAEITAYLKRQKAETVMLEQANKTVEELN--------LGKQPALNFAAAE 524 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKF 590 +N++ S + + V+ +T + G ++ +F Sbjct: 525 TWVYAENKDPALNNAIFSMAKPEQDKTTYAAAKADNGDVVIVALTAVENGEVSAEQGAQF 584 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + Q DL +++ L+++ + V++ +++ Sbjct: 585 AAQVMQAEQTDLQANLLKSLRNKAKIEVNEEFMKQ 619 >gi|119897859|ref|YP_933072.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72] gi|119670272|emb|CAL94185.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72] Length = 631 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 239/642 (37%), Gaps = 44/642 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R R VA+I L +L +PF +GL G V V + + F + Sbjct: 1 MFDAVRNNKR--VAQIILALLIIPFAFFGLDAYFKDGPGGGEVAVVDGAPITAAEFDRAL 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + ++G V+S S L + +L+ +VS L ++ D + ++ IA Sbjct: 59 RERQDRLRNEMGGPVDSALLESPALRRAVLETMVSQRLLARYAADRHMVVTPQQLQETIA 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 FH ++ +FS + L + + + + + + Sbjct: 119 AVEAFH-ENGQFSLQRYQDVLRAQNMTPAGFEARLAQDVRIQQLAASIGEAAFTPAASAK 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R V + ++ +++ + P + Y++ D Sbjct: 178 RFLLAQLEEREVRELRFPASRYLGEVKLADGAAQAFYDANAAGFEQPARLKAEYVVLDEA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 K++++S++E++A Y+ N ++ PE R ++ A DE Sbjct: 238 ALAKQVKVSDEEVRAFYDGNPGRFGQPEERRARHILIQVDAGAPEAEVAKAKAAIDEIAA 297 Query: 289 SLKK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +L K +F LA+ + G + LG F + + D+ F AK G PV+ Sbjct: 298 TLAKDPGRFEALAKASSQDSGSAARGGDLGFFGRGAMVKP-FEDAAFGQAK-GVVGPVVR 355 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402 FG+ I V++IKP+ T S V+ +I +++R A + E + S+ Sbjct: 356 SDFGFHIIQVTDIKPATTRSLDSVRGEIVDELRKQAAGRRFAEVANDFSNMVYEQPDSLK 415 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460 ++ + + V + +G + +L+ +F +D + +T + L Sbjct: 416 PVAEQFGL------EVRTSDWVQRGADAVGSVSSSKLVDALFAEDASKNGRNTQAIELGP 469 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + ++ PA+ ++V ++++ + + A+ + + + + K Sbjct: 470 NALAAGRVAAFEPAQRLPFDQVRAEIEQQLRNEEAAKLATERGSAALAALEK-------- 521 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 G+ G ++ R + SG + + G Y V+++ Sbjct: 522 GEAAGGEFSAARKLQRGAPALPAAAMQAVFAAPSGKLPAHVGVALPEG-GYAVYRIDAVN 580 Query: 581 VGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + + D S ++M+ + S +A L+ +Y V + Sbjct: 581 RPVLADDDPRIAAVASQYSRMVAERDFGSFLAGLRERYKVEI 622 >gi|16126137|ref|NP_420701.1| rotamase family protein [Caulobacter crescentus CB15] gi|221234908|ref|YP_002517344.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000] gi|13423343|gb|AAK23869.1| rotamase family protein [Caulobacter crescentus CB15] gi|220964080|gb|ACL95436.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000] Length = 654 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 128/643 (19%), Positives = 253/643 (39%), Gaps = 23/643 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML RK +++ A + +L V F I+G+SD GS V+S G + + F + Sbjct: 1 MLAGFRKFAKSPFAVVLFGLLIVSFAIFGISDVFKGPQGSG-VISAGSRSMSAIDFKQRF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q+ G + ++A G+D++I+ LV +L + +G+ V + Sbjct: 60 DNYRKAMEQQNGTTLTPDQAVEQGVDRQIVQELVLQESLAAALHKMGVAPSDKLVADTVH 119 Query: 121 RSPL--------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 F KF + + + + G+ + Y +++T G+ Sbjct: 120 EQMSQLPPTTRPFDPITGKFDSRAYATLMQQNGLTPETYEASLRDEIAQTHFFSAIADGL 179 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + + + E R V V+N V P++A LT + ++ D PE + + Sbjct: 180 KAPRIYAALQGAYLLEAREVSAFVVNPSTVQRPNPPTDAQLTAFMKENADRLTRPETRVL 239 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 S + E + I+ ++Q ++ K+ PE RT+ Q+ P+ K A Q L K Sbjct: 240 SIMRVSATALEPSVTINPADVQKAFDFRKDSLARPETRTIVQIAAPDAKAAAVISQRLGK 299 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G+ +A+ GK+ + L K +PD +AD+ F+L + G + I G G + Sbjct: 300 GEDPAAVAKAYGKTP--LVLTDKPKSAVPDRKVADAAFAL-QTGQVSGPIIGDLGVAVVK 356 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V+ I P + V+ I ++R A K E + ++ G + + + + Sbjct: 357 VTKITPGAVATLDSVRPQIEAEVRSQTAQAKAYEQTQTYQDARDAGADLISAASKAGALV 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 I V G D G+ A + ++ F + V G Y V+++ + Sbjct: 417 ITTAPVTAQGTDQMGQPFAGL--TPDIIKTAFDLSQG-GESELVEAGKGEYYAVKVERIV 473 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 PA L EV + W + A+ + +KA++L K+G++ + +++ Sbjct: 474 PAALPPLAEVKPQLTAVWFGQEMAKRMKAKADELAAR-VKKGESLEAVATAAQSNVQKIP 532 Query: 533 -QINRMDNENKF-FGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVGPVQEKDK 589 + R + + G + + F+ V + G +YVV K+ + P + Sbjct: 533 GGLTRQNAQQHVALGQEFLGAAFTAKPGAVFTARAGQQGQAYVVAKLDAVRAAPTANVAQ 592 Query: 590 FI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + +DL ++ ++Q + L ++ + Sbjct: 593 IAVLAQGQAANGLMRDLAEATRVVARTQMKAKSNLTLARQAIG 635 >gi|289664180|ref|ZP_06485761.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 656 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 108/672 (16%), Positives = 238/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L VPFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMVPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L V A S+A + QW+E Sbjct: 179 LQQSVIPQAVAESGFATKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQWYE 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + +L Sbjct: 416 FADISGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + ++ + + Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRSEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +F+ P Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFTAPRPTK 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVQLDGGRFAVFVISKATPGDLKQMPAEQQAMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|293391759|ref|ZP_06636093.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952293|gb|EFE02412.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 615 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 118/636 (18%), Positives = 248/636 (38%), Gaps = 37/636 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS W +K + V F+I ++ L+S SS V +++ +++ Sbjct: 3 MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSS-AAKVNGEEIS----QQAFQ 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + SQ + L +++L +L+ L Q+++D+ L R+ EI Sbjct: 58 NQYNIASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVT 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +P F + KF + ++ L GI+ + Y + + L + + + Sbjct: 118 TPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALRLEQLQSGLGITAFTVPVQQEA 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +F+ R V L+ A S + +++ +K ++ PE ++ Y+ Sbjct: 177 LAKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPELVKVQYLDLSGAN 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 EK I IS+ E+ Y+ NK ++ + + + + +++A + +Q L+ G +F LA+ Sbjct: 237 MEKNINISDVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGAEFSTLAK 296 Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L S P V D+ +L G F+ + Y I V K Sbjct: 297 NHSIDPISAEKGGDLSWVSAGEFPKV-FEDAANAL-DVGKFSQPVKLDNSYHIILVEGRK 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 S + + V+ I Q+R + + KR+ E +S + + + Sbjct: 355 DSAVLPLERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAFEDSSSLNAAAEAG--GVKVQE 412 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475 + + K++ A ++ +F D S +++ D + +++ E Sbjct: 413 TGYFSR----KDIPAALNYPNVVSAIFDSDISQGGSNSEPMSIGDQHSVVIRVLEHKAES 468 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + L+E D+ K K V ++AN+LV E + GK + T + Sbjct: 469 VKSLDEAKNDITARLKRQKAEAVVLAEANKLVQELT-AGKTVDSL------KFGATQSLV 521 Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKDK 589 +N + + VF+ P V E VV + G QE+ + Sbjct: 522 FAENNDPML----YNAVFAMPKPTEGKAVYQATKETKGDIVVIALDKVVDGALSEQEQQQ 577 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 F L + L ++++ L+++ + ++D+++ + Sbjct: 578 FAVQLARADQIALQNNLLNALRAKAKIEINDSVVNQ 613 >gi|289668772|ref|ZP_06489847.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 656 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 109/672 (16%), Positives = 238/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L VPFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMVPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L V A S+A + QW+E Sbjct: 179 LQQSVIPQAVAESGFATKAEFERLLKLMGETRDVELAMLPPSAV-DTAPVSDAQIKQWYE 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + +L Sbjct: 416 FADISGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRT-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + ++ + + Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRSEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVQLDGGRFAVFVISKATPGDLKQMPAEQQAMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|163742798|ref|ZP_02150183.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10] gi|161384053|gb|EDQ08437.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10] Length = 613 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 131/629 (20%), Positives = 253/629 (40%), Gaps = 28/629 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++K S T+V I + +L + +G + SVS V VG Q+V + Sbjct: 1 MAAGMKKLSNTFV-WILMGMLIIGLAGFGAVNFTGSVSS---VAVVGDQEVSVDDYAREL 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + + G V + ++GLD+ +L L++ A LDQ D+GL ++ EI+ Sbjct: 57 QREQRALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEIS 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R P F F+ D + L G+ E + + +RT V G + G + L D Sbjct: 117 RIPAFQDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRD 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + RS D++ ++ + +PS L +++ D + P K I+Y Sbjct: 177 TLTSYVGARRSFDWLTVSEDSIALTEVEPSEDELRAFYDANIDQFTLPRTKVITYAALRP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298 +IEI L+ + +Y PE R VE+LVF N+ AD A L G F Sbjct: 237 DALVDEIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDA 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L ++G SL D+ LG + + S +F+ A+ GD + G + ++ Sbjct: 297 LVADRGLSLQDVDLGDVTMGDL--ASAGQDVFA-AQVGDVVGPLDSDLGPALFRINGRLE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + S ++VK ++ ++ +A ++ + + + LA G +++E+ ++L + Sbjct: 354 ARVTSLEDVKDELRAELATDRARRLIETRSEEINDMLAGGATLEELIDE---PGMELGKI 410 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D+ G +AA Q V +D P L DGS +++ E + R Sbjct: 411 DWHNGSTDG--IAAYDGFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEP 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 + ++ W++ + + + ++A +L G D G L + + R Sbjct: 465 FADAQDKLRAAWQSKRLQDALEAEAERL------AGMLRNDEDLPEGIELTSETGLTRAA 518 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLT 595 + +++VF V + V T + + + L Sbjct: 519 YIDAA-PQPLMARVFDLAEGDVAVVSDDTATVVVRLTETLPVADTPEMTALAEAMGTQLD 577 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 Q + + L ++ + +++ + + + Sbjct: 578 QALAQALFEAFVQDAQTRAAPRIDPQALN 606 >gi|285017392|ref|YP_003375103.1| peptidylprolyl isomerase (rotamase d) protein [Xanthomonas albilineans GPE PC73] gi|283472610|emb|CBA15115.1| probable peptidylprolyl isomerase (rotamase d) protein [Xanthomonas albilineans] Length = 661 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 113/675 (16%), Positives = 239/675 (35%), Gaps = 66/675 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R+ + W+A + +L +PFL + G++ V V Sbjct: 1 MLQTLREKTSGWIATAIIGLLMIPFLFV-IDTGYLGGVGANNVAKVQAPPSWWLSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S+ +K+LD L+ + Sbjct: 60 PVSLLWQHHEISTEQFRMGFEQARQQARQQQGEAFDPREFESIDNKRKVLDQLIDEQVVK 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 E G+ V IA P F + KF + + LA + Sbjct: 120 LAAEQAGVVIGDASVRDYIASIPAFQN-NGKFDPERYRLALASGTPPRTPAMFQQLVRDA 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + S ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPTGLMESAFGSKQETERLMKMLGETRDVELAML-PEMPADTAPVSDAQVQQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 + +++ PE I Y+ + + L+ YE+ K ++ P+ R ++ Sbjct: 238 THTSDFKQPETVSIEYVELNAAKLPASKPADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 278 -----PNQKEADEAFQSLKK-----GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDV 323 +QK A+ L G F LA + G + LG K + Sbjct: 298 AGKDAASQKAAEAKAVKLAAEAKRPGADFAALARANSDDPGSKNAGGDLGWVEKGVMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K G+ + FGY + + +K SF++V+ +A++ + Sbjct: 358 -FEDALFAM-KPGEIVGPVKSEFGYHVIQLREVKGGKGKSFEQVRDQLASEQLQADNEKA 415 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +L + + + E++ K V + + + + A Sbjct: 416 LSALSGKLVDEVYKNPT--ELASAAKDVGLPVQTLGPFTRASASGIAAQPAVLRAAFSDA 473 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 +D + + L + +++ + P + L +V V +TA+ ++KA Sbjct: 474 LVQDGTV--SDPINLGPNHSVMIRVTQHQPEQILPLAKVHEQVIAAVHADRTAKAAAAKA 531 Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-- 561 + L++ K G+ + + + ++R + + +FS P + Sbjct: 532 DALLVRLRK-GETLQALAGPEKLQINPMPALSR----SPMPSPEANRTIFSAPRPVAGKP 586 Query: 562 --------CFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIA 608 P G Y +F VT G P +++ F L Q+ + + Sbjct: 587 SFGKVALPAAPGAGGKRYALFAVTKVMPGDLSKVPAEQQTTFKQQLAQIEGAADAKAYVD 646 Query: 609 YLKSQYSVTVHDNLI 623 ++ +Y V+V + + Sbjct: 647 AMRKRYKVSVQEAQL 661 >gi|149378497|ref|ZP_01896176.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola DG893] gi|149357219|gb|EDM45762.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola DG893] Length = 608 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 119/628 (18%), Positives = 253/628 (40%), Gaps = 38/628 (6%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR+ ++ +AKI + +L V IWG+ + SG V +V + + F+ + Sbjct: 1 LQDIRENAQGTIAKIIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVVQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E ++ + + + +LD L+ + ED GLE + I + Sbjct: 61 IESQRRLSEMENP-DPSLLDEDQVRQDVLDALIQQKVMTLNAEDQGLELSDADIDSLITQ 119 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F D F+ D FVS + G+ E+ + K + ++ + Q Sbjct: 120 MPQFQ-VDGTFNRDRFVSAVRNMGMGVAEFRETMRKQYVVNQIRAGISQSGVVTDENVAQ 178 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 R + R+ L+ V + ++A + ++++ K+ ++ PE SYI+ + Sbjct: 179 LLRIQNQTRNFRVTTLSADAVSDQVEVTDADVEAYYDENKEAFKLPESVDASYIVLSLAA 238 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKKFI 297 + IEIS+++L+ YE+ + E R ++ + + A+E + L G+ F Sbjct: 239 LAETIEISDEQLRDYYEQRASELMR-EERRASHILIEDGENAEETMATIQERLAGGESFA 297 Query: 298 QLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LAEE G F++ + D + D++F+L ++G+ + + SFG + + Sbjct: 298 ALAEEFSVDTVSAEQGGDLGFAERGVYDPAFEDALFAL-EEGEVSEPVSTSFGVHLIKLE 356 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +++ + E++ + ++ +A+E+ E L + ++ + + + Sbjct: 357 DVQKTEAPPLAELEDQLRRELAQREATERFAEVRSELADLAYAADNLAGPAEELGLEVRE 416 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALPDGSYMWVQIKES 471 + G D P+ L R +D L+ + + D + ++ E Sbjct: 417 KSGITRNGGD--------APFDHAGLIRQLFSEDVLNEGFNTELIDVGDNMSVVARVGEY 468 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 A+ + LE+V +++ KT E ++ +A+ ++ + + GK+ ++G L Sbjct: 469 QEAQQQPLEDVAEEIRAALTRQKTREALNERADAIIADL-ESGKDIEELG------LGEW 521 Query: 532 NQINRMDNENKFFGYDGISQVFS----GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-- 585 N G +SQVFS G V + +G + +V + G V Sbjct: 522 QSYEEQPRSNPALGGAVMSQVFSLQRPGDGGNVYGSVVSDGSASIVA-LDAVNEGEVNRD 580 Query: 586 --EKDKFISYLTQMMNKDLLDSVIAYLK 611 E + +L + + + +L+ Sbjct: 581 GGEFRQLRGFLASLEGQREYQAYQQFLR 608 >gi|239908536|ref|YP_002955278.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1] gi|239798403|dbj|BAH77392.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1] Length = 650 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 113/648 (17%), Positives = 253/648 (39%), Gaps = 40/648 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK +++W KI ++ + F+ WG+ + F+ ++ + +V Q + + + Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIIIVFVFWGVGN--FNGDRATVLATVNGQPILIKDYEKQY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L ++ K V + + G ++ N+V+ L+ + +G+ G + EIA Sbjct: 59 QENLRLVKNK-NPNVTDKDLQDGGFRWQVFTNMVTTKLLEDQAKTLGIAVTAGELRSEIA 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F + +F + + L ++ E+ + + L + + + Sbjct: 118 KIPAFQNESKQFDAKRYENLLKANDVSPGEFEADFRQQLLLEKLAAFVGLPAQVAEAEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E + YI S+ + +++E KD + P +I ++ F Sbjct: 178 SIFDFMREQAIIKYIPFAATDFTKGVTISDEQIAKYYEARKDEFATPAQVKIDFVEFTPK 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 K EI++ +++A+++ N++KY PE V ++ +K Sbjct: 238 AMAKPAEITDTDIEADFKANQKKYERPEQVRVRHILMMLPPDAPQEVVDAAEKRLKAMAD 297 Query: 289 SLKKGKKFIQLAEEQ--------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++KGK F L + G+ + + GS KE+ P + F+L KK + + Sbjct: 298 DVRKGKDFATLIPKDPANADGIIGEDWAWLPKGSLPKEFAP---FEEKAFTL-KKDEVSD 353 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + S G + + S + EVK +I + +A++K+ + ++E L+ G Sbjct: 354 PVRTSLGLHLIQGGEKQASGQRALAEVKDEIRADLAEQRAADKLTKSLDAIQEKLSSGEP 413 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 ++ EK+ V + K A + E + +F + D ++ D Sbjct: 414 LEAAVAAEKLA------VKTSAFFAKDAPPAELGLSEPAVEAIFALKKGQTADAPLSTQD 467 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G ++ V+ E L+ V + +K + + +KA + + + + + Sbjct: 468 G-FVVVRAAEVKEPGFEPLDAVKSVIKGRLTDEEAMKLAKAKAEE-TAKAMETEDGLKKV 525 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + + T+ R ++Q F +YVV + + Sbjct: 526 LADYKDKIQTSAPFTRQGFIPGLGMSPVLAQTAFEAKGPGWFKTAFGVSGAYVVAGLDKT 585 Query: 580 KVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + EK+++++ LTQ +L + + L+ V + ++ I Sbjct: 586 VPADISLWDKEKERWVATLTQSKQTELFRAYLQTLQEAARVEIVNDAI 633 >gi|71278179|ref|YP_270447.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea 34H] gi|71143919|gb|AAZ24392.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea 34H] Length = 638 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 101/642 (15%), Positives = 243/642 (37%), Gaps = 34/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ AKI L ++ + F + G+ SV S V +V + + +F ++ Sbjct: 1 MLEDIREKSQGLTAKIILGLIILTFAVAGVGSYTNSVDTS--VATVNGEPISQQAFNKAY 58 Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + G ++Q+ G + ++ + + +LDNL++ +DQ E + + R+ Sbjct: 59 QAQRGRMAQQFGEMFDTLSNDANYMANFRQGVLDNLINEKLIDQNSEALAIRVSDLRLKE 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGI-NEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + P F D F ++ +++ + + G ++ D+ ++R + + Sbjct: 119 TIRKMPEFQ-VDGTFDNNRYLAIINQAGFFQSSDFRDYLRVEMTRRQLSQALIATEFNLP 177 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + R + + ++ A + ++ + ++ + ++ E ++ YI Sbjct: 178 YQEKLQLALQNQTRDIRFATISAEQFKATVELTDEEVNSYYLANQARFQNKEQVKVDYIS 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEA 286 +V K I ++++E+ Y++N + R + ++ + +A Sbjct: 238 LNVANIAKGINVTDEEVAKYYQENSASFTESAQRRISHILIEFNDGNADDEAAKIQAQAV 297 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 L++G+ F LA+E G + + + + + ++ +L GD + ++ Sbjct: 298 LARLEQGEDFAVLAKEVSNDTFSGENGGDLEWLEPGVMEETFDEAALALVNVGDTSQLVK 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402 SFGY + +++ K + +V+ ++ +++ +A EK + + S++ Sbjct: 358 TSFGYHVLKLTDYKEEVVKALIDVQTELRSKLSNDQAQEKFFTLQQEMARISFEFPDSLE 417 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + + + P + G + A+ + F D ++ D + + D Sbjct: 418 DAAAEVNVTIQTSPWLLRGGNSAPFDQAKAV----EAAFSDIVLQDNMNSD-LIEVNDDV 472 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + +++ A + L EV +K K E+ + L+ ++ G + Sbjct: 473 ALVLRLNTFQEANVKPLSEVEAQIKDIIVNQKATEKAQQTVDSLLADF-NAGTDISTQLT 531 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTN 578 L S ++ ++ R E F P + + + +VT Sbjct: 532 ALNTSFVSKEKVARYSPE---IDQSISRAAFVLPHPVSGVISASTVALSNGDLALIEVTA 588 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 V V T + + S + LK +T Sbjct: 589 VDVNDVAATPNLAQQQTSQLAQSAYQSFVNSLKVGAKITRKQ 630 >gi|78066690|ref|YP_369459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] gi|77967435|gb|ABB08815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] Length = 644 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 106/659 (16%), Positives = 243/659 (36%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + LS + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL A P++A L +++ +K ++ PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKTAAKTKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+GD + Sbjct: 300 LLADVKAHPDQFAQVAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KP+ F +VK IA +++ AS+ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPAAVKPFADVKDQIAAELKQQYASKAFTDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ + + P + L VF D S+++T + Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDSVKSQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K K+ Sbjct: 476 DIGNNTLISARVTDYKPAAVPALDAIKDVVRQKVVAEQAAELAKKDGVAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 ADGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + QM D ++ +A L+ + V ++ + + DG+ Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGSTAGQSQDGD 643 >gi|327480677|gb|AEA83987.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri DSM 4166] Length = 618 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 101/640 (15%), Positives = 237/640 (37%), Gaps = 47/640 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + S + V +++ + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++Q++G + L L +L+ L Q + + I Sbjct: 61 NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D F+ F + + G + ++ + + + G ++ + Sbjct: 121 QTPEFQ-VDGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R + + +H + S+ + +++E D +R PE + Y+ Sbjct: 180 NFARLEMQTRDFATLTVPAQHEA--IEVSDDQINEFYEANADRFRTPEQVVVEYVELKKE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK 291 ++E S++ELQ Y+K E R ++ + + DE +K Sbjct: 238 SFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDDEAKAKIDEIAARVK 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +A+E + + G F+ + D + D++++L +G+ + + FG+ Sbjct: 296 NGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-NEGEVSAPVKSEFGW 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++ SF+ +K ++ +++ + ++ E K+LE+ + + + ++ Sbjct: 355 HIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAFEASDLAQPAQEL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 ++ G + I Q++ F ++ + + L + + + Sbjct: 415 GLMVQTTEAFGREGGE-------GITANRQVIQAAFSEEVLVDGANSSVIELDPDTAVVI 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE + L +V D+ + + AE ++ QL+ E +EGK Sbjct: 468 RVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAEL-REGKQPE-------- 518 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 + + + VF P + P +G++ YVV ++ Sbjct: 519 --GQWQAVEAATRSQEGVAPALLQAVFRMPRPEQQDKPSYSGVALNNGDYVVVRLNGVNE 576 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK +L M + + L+++ + Sbjct: 577 ADATLSDEEKLNIRRFLASRMGQQDFAAFRQKLQAEAKIE 616 >gi|170717232|ref|YP_001784350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus 2336] gi|168825361|gb|ACA30732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus 2336] Length = 618 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 120/639 (18%), Positives = 262/639 (41%), Gaps = 41/639 (6%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS V+KI ++ V F++ G++ +F + ++V V +++ F+ + Sbjct: 3 MEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQYN 61 Query: 62 QELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 E +S+ +G +E A S L ++LD L++ L Q+ +++ L +V I Sbjct: 62 NEYQRLSENLGAKF-AEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 SP+F + KF + ++ LA GI+ Y + + L + + L Sbjct: 121 VNSPMFQNE-GKFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQL 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ + +F+ R V VL+ + + Q+++ K N+ PE ++ Y+ Sbjct: 180 NELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTR 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++K++IS+ E+ Y+ NK +Y + + + + P ++EA + +L+ G+ F L Sbjct: 240 AIADQKVKISDIEIAQYYQDNKAQYIT---KHLAHIQLPTEQEAQSVYANLQNGEDFSAL 296 Query: 300 AEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ + L +P ++ ++ +L G+++ + Y I V + Sbjct: 297 AKLYSMDTLSAQKGGDLDWVVNGMMP-LAFESAV-TLLNVGEYSQPVKVDNAYHIIKVLD 354 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSID 414 +K T +VK++IA ++R + K++ E S++E + K+ ++ Sbjct: 355 MK---TRELNDVKEEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEEAA---KVAGLE 408 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESI 472 + D+ + E+ + +F D + + D + +++ + Sbjct: 409 IKETDYFSRQDLPPELNY----SHIATAIFNSDLMQGGINSEAINVGDQHSVLLRVVDYK 464 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P R L E D++ K K + + A ++V E + D Sbjct: 465 PEGIRTLAEATADIETYLKRQKAETTLFNMAEKIVAEMN----TMTDFKLPSYIHFSEKE 520 Query: 533 QINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVF----KVTNSKVGPVQ 585 D +NK + +FS +N +VF V +S++ P + Sbjct: 521 TWVYRDVDNKDPVLGKV--IFSMKKPDPGKTTISVAKNMFGDIVFVELMNVEDSQLTP-E 577 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +K F + ++ L + +I L+ + S+ ++ I Sbjct: 578 QKQLFGVQIAKIKQFSLSNLLIQALREKASIEINTKFIN 616 >gi|152995753|ref|YP_001340588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] gi|150836677|gb|ABR70653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] Length = 607 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 117/636 (18%), Positives = 236/636 (37%), Gaps = 49/636 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ V KI + + V F ++G+ + S + S TV V + + + Sbjct: 1 MLQDIRDKSQGIVVKIIVGFIVVTFALFGVDALVTSFNSSDTVAEVDGVDITRTQMLQGA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G VN L ++ LD LV L + +GL +V + Sbjct: 61 ETQRRQLISMMGGQVNPALLEDNLLQRRALDELVQRVVLANQAKGLGLGVSDAQVNAYLL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++ F + +F + +++ + G + + + + G +D Sbjct: 121 QAEQFQ-TNGQFDQNKYLNFIRSLGFTPLAFKERIKQDVLIQQPRNAIAGSEFVLPYQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+ DY+ + S+ L ++E K+N++ PE +++Y++ Sbjct: 180 SVSKLQSQERTYDYVSFSLADESENTSVSDDELKAYYEANKENFKTPEQVKVNYVVISSS 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKK 292 + K++I++ ELQ Y+ + E R+ ++ +K +E LK Sbjct: 240 DFYGKVKITDAELQDAYQASISVLAQ-EERSASHILIETSDRSDDEAKKRLEEVEAKLKA 298 Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G KF LA + + +LG K I + D++FS+ KKG+ V G +GY Sbjct: 299 GAKFADLAAKYSDDIGSNKDGGNLGYVEKG-IMGSAFDDTLFSM-KKGEVKSV-KGQYGY 355 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + +I SF K+++ ++R KA + + ++ + + +D I++ Sbjct: 356 HLIKLDDISKPDVPSFASKKEELLQKLREDKARDALLTAHEDITDLAYASDKLDAIAKEY 415 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 +D+ + G+D E+ + P F V +D + + + L D + + + Sbjct: 416 ---GVDVLQSAYFGRDGGSDEITSSPAVIAAAFGVSVLEDGQNSN-LIELGDDQVVVLHL 471 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + P + EE V K E + +KA + Sbjct: 472 NDHKPEAFQSYEETKEQVASIVVQNKAVESLRAKAEK--------------AKSASNTKW 517 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVG--- 582 + R +E FS P V + + ++ G Sbjct: 518 TSVKDAKRGQDEMTSL-------AFSLPHPEGKPVIEVKGLSNGDLALIRLNKVDAGNAT 570 Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P +K + YL Q YLK++ + Sbjct: 571 VPDDQKLAYERYLNQTQVTLSTQGQQDYLKNKAKIE 606 >gi|260912811|ref|ZP_05919297.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC 43325] gi|260633189|gb|EEX51354.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC 43325] Length = 625 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 119/636 (18%), Positives = 260/636 (40%), Gaps = 27/636 (4%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + +WV+K+ L ++ V F++ G++ +F+ ++V V +++ +F Sbjct: 1 MLIEKLHSITNSWVSKLVLGLIAVAFVLSGITGYVFTNV-DTSVAKVNGEEITQQAFHQR 59 Query: 60 WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E ++Q++G + + L + +L++LV+ L Q+ D+ L R+ Sbjct: 60 YESEFERLNQQLGSQFAAVAGSKGFVSNLRQSVLNSLVNQELLRQYANDLKLAVSDERIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 EI S LF D KF ++++ RL G+N Y + + L + Sbjct: 120 QEIVTSELFQ-TDGKFDNNLYQRRLQLNGMNADMYAAYVGEALRLDQLQSGLAESAFSVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 DQ +F+ R + + + A + + +++ K + PE ++ YI Sbjct: 179 AQQDQLTELFFQTRKLRLAKFDLKDEIAQQQVTEEEIKAYYDANKSAFSVPELAKVQYIE 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + EK I++++ E+ Y+ NK Y S + + + +++A E + +L+ G F Sbjct: 239 LTRADVEKNIQVTDVEIAQYYQDNKALYVSQGQQRISHIELATEQDAQEVYAALQDGANF 298 Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA + + L S +P + D+ +L + G F+ + Y I Sbjct: 299 AGLASARSLDKISAANGGDLSWLSAGGLPK-AFEDAANAL-EVGKFSQPVKVDSHYHIIL 356 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V++ K + + VK IA+Q+R + + K++ E + + +++ ++ Sbjct: 357 VTDRKSAEALPLSVVKTQIADQIRQNLVNNQYFSVEKQMAEKAFE--NPESLAKAAEVAG 414 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 +++ DF + E+ ++ +F D + + D + V++ + Sbjct: 415 LEIKETDFFSANDMPMELNY----PNVVSAIFHSDISQGGVNSEPMNVGDQHSIVVRVLK 470 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + P R LEE D++ K K V + +++ ++ K G + Sbjct: 471 NTPEGVRSLEEAKADIETLLKRQKAESAVLAAVSEIAKNLTQNPKQ----ELPKGVNFAK 526 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKD 588 N ++ + F + NG V+ ++ + G +++ Sbjct: 527 EESWVFAQNSDQTLANAVFAMPFKAGETTYQAAKSGNG-EIVLIQLNAVEQGSLTEEQRK 585 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 F + Q +L +S+I L+SQ + V+D + Sbjct: 586 AFDLQVEQTREFELQNSLIQALRSQAKIEVNDKFYE 621 >gi|146282422|ref|YP_001172575.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501] gi|145570627|gb|ABP79733.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501] Length = 618 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 101/640 (15%), Positives = 236/640 (36%), Gaps = 47/640 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + S + V +++ + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++Q++G + L L +L+ L Q + + I Sbjct: 61 NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D F+ F + + G + ++ + + + G ++ + Sbjct: 121 QTPEFQ-VDGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R + + +H + S+ + +++E D +R PE + Y+ Sbjct: 180 NFARLEMQTRDFATLTVPAQHEA--IEVSDEQINEFYEANADRFRTPEQVVVEYVELKKE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK 291 ++E S++ELQ Y+K E R ++ + + DE +K Sbjct: 238 SFFDQVEASDEELQELYQKQIANL--AEQRRAAHILIETGGELSDDEAKAKIDEIAARVK 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +A+E + + G F+ + D + D++++L +G+ + + FG+ Sbjct: 296 NGEDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYAL-NEGEVSAPVKSEFGW 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + ++ SF+ +K ++ +++ + ++ E K+LE+ + + + ++ Sbjct: 355 HIIKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAFEASDLAQPAQEL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 ++ G + I Q++ F ++ + + L + + + Sbjct: 415 GLMVQTTEAFGREGGE-------GITANRQVIQAAFSEEVLVDGANSSVIELDPDTAVVI 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE + L +V D+ + + AE ++ QL+ E + GK Sbjct: 468 RVKEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAELRE--------GKQPKG 519 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 R + + VF P + P +G++ YVV ++ Sbjct: 520 QWQAVEAATRS---QEGVAPALLQAVFRMPRPEQQDKPSYSGVALNNGDYVVVRLNGVNE 576 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK +L M + + L+++ + Sbjct: 577 ADAALSDEEKLNIRRFLASRMGQQDFAAFRQKLQAEAKIE 616 >gi|303326078|ref|ZP_07356521.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio sp. 3_1_syn3] gi|302863994|gb|EFL86925.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio sp. 3_1_syn3] Length = 640 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 115/652 (17%), Positives = 239/652 (36%), Gaps = 40/652 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++++ K+ V+ + F+ WG+ + ++ V V + F ++ Sbjct: 1 MLDYIRSNAQSFGVKVAFGVIILVFVFWGVGS-FNDRNSANVVAIVNGDPILVQQFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + I + V E+ + L +++L +L+ L Q G+ + + Sbjct: 60 RNAEESILRNNPG-VTREQLKEQHLGRQVLRDLIQQTLLAQEAARAGVSVTPLELRQAVG 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R F +F + + LA + I+ +Y + L R + + + Sbjct: 119 RIKSFQDAQGRFDPEAYTRVLAAQRISPAQYEKDMSDQLLREKIFTLVTAPVWVDPDEAQ 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E R VDY+ + ++ ++ +T +++ +K ++ P ++Y+ Sbjct: 179 NRYNFLREKRVVDYLFIPAKNFSGEVKVTDQDVTAYYDAHKKDFAIPPKVDVAYVSVTPG 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------NQKEADE----AFQ 288 K IS + Q YE NK ++ P ++ P +K+A E Sbjct: 239 GLVKPESISEADAQKWYEANKSRFEEPAQVKAAHILVPLAENAPADAEKKAREEVAKIQA 298 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK GK F +A+ S + LG + D+ F+L K G + + Sbjct: 299 ELKSGKDFAAVADAHNGSNAAGPGGELGWITPGKTVKP-FEDAAFAL-KAGQVSEPVRSP 356 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG I V + KP +F++ +++ M + ++K+ + L E LG + E + Sbjct: 357 FGLHIIKVEDKKPGGLKTFKDAAREVRQAMAQEQGADKLHDVLDSLIEDNILGKPLAESA 416 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 R + + + +G + + + + D + D Y+ Sbjct: 417 ARFGLKA------EQSGLLSQSELEQKLGITPVGASALIATATGAPVDTALEAGD-KYLV 469 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +I ++ PA + L+ V + + K + A E K+G + + +LG Sbjct: 470 ARIIKAEPASTQPLDAVKSAIVAKLTAEKALKAAVESAAARRKEL-KDGPLPQPLKASLG 528 Query: 526 ASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEM-----VKCFPIENGLSYVVFKVTNS 579 T ++R N F + ++ VF+ G ++ +V Sbjct: 529 IK--TAPAMDRGGNLADFNPDEALAEAVFTAKPGTWLPSAYAVDGKSEGPGALLCRVDAV 586 Query: 580 KVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTV-HDNLIQRY 626 QE + + + ++ L I L S+ V V + +++ R Sbjct: 587 LPPDPQEWNTVRDLMANGVARERVDGLYQVFIQNLASKAKVEVLNTDIVDRV 638 >gi|158520285|ref|YP_001528155.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus oleovorans Hxd3] gi|158509111|gb|ABW66078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus oleovorans Hxd3] Length = 631 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 117/646 (18%), Positives = 255/646 (39%), Gaps = 37/646 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ + + + K L ++ + F+ G+ + F T +V + V F ++ Sbjct: 1 MLQFMRQKASSIIIKGVLSLVILAFIFLGIGN--FREQQEVTAATVNEEIVTGREFQYTY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L Q+ G +N + + + L ++ ++ L+S + Q + +GL + I+ Sbjct: 59 QRLLDTYRQQFGGALNDDLLKMLNLKEQAMNQLISEKIILQQADKLGLNVSDSELAATIS 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + +F + L + + + L + + + S+ Sbjct: 119 SIPAFQN-NGRFDKTRYNRLLQSNRMTAAAFEQSQKQGLLVDKLRTLITDSVLVSDNEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + V DP+ A + ++E++KD Y+ PE ++I+Y+ Sbjct: 178 QWFDWENARVKITAAVF-AAEGRTDVDPAEAAVAAYYEEHKDQYKTPEKRKITYVRVAPA 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289 +++++ +E+ Y+ N++ Y++ E ++ +++ADEA Sbjct: 237 RYLSEVKVTEEEIADFYQANQDFYWNEETVEARHILISLEQDADEARVEEARQKAADIYV 296 Query: 290 --LKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 GK F + A + + S LG+F++E + ++ FS+A G+ + + Sbjct: 297 MVTDGGKDFAETARQYSEGPSAGEGGYLGAFTREDMV-APFSEKAFSMA-PGEISEPVRS 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ I V + +FT EV+ DI Q+ KA E E+ L + S+++ Sbjct: 355 QFGWHIIKVEKVNAAFTTPLDEVRADIEKQLLDQKAGEYAYEEALTLFDMALDTDSVEQA 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + + ++ + + +A + ++ + F D + V ++ Sbjct: 415 AASRNLTAVTTDAI------TQNDTLADVEAGRTMVRQAF--DFVEKEISDVITEGNTHF 466 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 Q+ E +PA LE V V +D + E ++A + VLE K G+ Sbjct: 467 LFQVTEVMPAAVPPLENVQARVIEDLREQMRKEAAQAEA-ESVLEKVKAGQPLEAACAGT 525 Query: 525 GASLLTTNQINRMDNENKFFGYDGIS-QVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVG 582 A ++ T R +S F + V +E Y V + + K Sbjct: 526 QAEIVATGFFGRTGAVPDIGNEPALSRAAFDLTKNQPVAPNVVEGRTGYYVVVLNDQKAP 585 Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 E +D + LT ++ S + ++ + +T+ + ++ Sbjct: 586 EASEFEEKRDAVVKRLTAQKKNEVFMSWLKTMRQESDITIDEAFLR 631 >gi|83644983|ref|YP_433418.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] gi|83633026|gb|ABC28993.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] Length = 628 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 117/638 (18%), Positives = 239/638 (37%), Gaps = 33/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ +AK+ + ++ + F +G+ + +SG V SV + + S F + Sbjct: 1 MLQNIRDNAQGVIAKVIVGLIVMTFAFFGVESIVGGLSGEPEVASVNGEPITKSQFERKF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ +G + + L K LD ++ Q + G + I Sbjct: 61 ERNRLQAIAGMGENYDPSKIDENKLRKTTLDEFITREVQLQAAREAGFAVSDATINNFIT 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P+ KD K+ ++ F+ L R G+ E+ + L + L+ Sbjct: 121 QWPMAQ-KDGKYDNNQFMEALRRIGMRPMEFRKELSDELLVGQLQSGIAQTSFVIGEELN 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R + RS Y LN V + S+A +++ KD + PE ++YI Sbjct: 180 ELLRMERQTRSFSYYRLNAEDVAKDIEISDAEAEEYYNSNKDEFILPERIIVNYIELTRD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291 + E+S++E+ YE+ K+++ E R ++ + A E Q LK Sbjct: 240 ALVGRAEVSDEEVSERYEQEKKEFLPSEQRRASHILIETSDDVSDEQALAKAQEVEQKLK 299 Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F LA+E L LG K + + +FS+ GD + + +G Sbjct: 300 DGGDFAALAKEFSSDLGSANDGGDLGYAQKGAFVEP-FEEKLFSM-NVGDISEPVKTEYG 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I ++++K S +E K I +++ KA E +L++ + + Sbjct: 358 YHIIKLNDVKAVEMPSLEESKDRIVKELQEQKADSLFVEVNAKLKDITYTADDLAGPAGE 417 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + G G+ + + P Q F +D + + L + ++ Sbjct: 418 LGLTVQTSEPFSREG----GQGIFSGPQVVQEAFSADVIEDGHN-SQVIDLGREGSLVLR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 KE +P+ ++ EV +K+ K + +++K+ ++V + K+ + GA Sbjct: 473 KKELLPSVPQQFAEVKEAIKQKLAVQKAKDTLAAKSEEMVAQL----KSGDLAPVSKGAD 528 Query: 528 LLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKV 581 T + D G I++ F P IE G + +V Sbjct: 529 GQQTGWVELNDARRSQAGAADIARLAFKLPKPEEGKPVIEKFETNFGYAVIVLNEVKDNT 588 Query: 582 GPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + E ++ + +++ + + ++ + Sbjct: 589 EDLSEAEQKTYRTFMASRNGQREYNDYNEKIQDAAEIE 626 >gi|325927445|ref|ZP_08188692.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans 91-118] gi|325542195|gb|EGD13690.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans 91-118] Length = 656 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 110/672 (16%), Positives = 241/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 238 GHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 K A A ++ + G F LA+ + LG K + Sbjct: 298 AGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K G+ I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + + +L Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + AE+V+ Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADR-AEKVA 527 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A +L ++G+ + + + + + R +FS P Sbjct: 528 AAAADALLARLQKGETLQALADSEKLQVQPIPVLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|254463425|ref|ZP_05076841.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacterales bacterium HTCC2083] gi|206680014|gb|EDZ44501.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacteraceae bacterium HTCC2083] Length = 615 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 119/624 (19%), Positives = 256/624 (41%), Gaps = 27/624 (4%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 A I L +L V +G ++ +V +VG + + + + +++L Sbjct: 6 NALSKTFIWILLALLIVGLAGFGATNL---GGNIRSVGAVGDKTISVELYSRTLQEDLRA 62 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 IS + G + A+++G+D++ L +++ LD ++GL ++ +I F Sbjct: 63 ISAQAGQNIPFSTAQALGVDRQALARVITTRALDHETAELGLSVGDAQLQQQILSMSAFQ 122 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 G + +F + + L G++E E+ + + +RT V G + G + + + Sbjct: 123 GINGQFDREAYRFTLENAGLSEAEFEETLREEAARTLVQGAILSGNTVPDTYANTLVAYI 182 Query: 187 FENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E R+ L + +A+P+ A L ++++ D Y PE K+I+Y L Sbjct: 183 GERRNATVARLKAEDLATPVAEPTEAQLQTYYDENIDAYTLPETKQITYALLSPDMIADT 242 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304 +E+ LQ Y++ + ++ PE R +E+LV+ N A A L+ G F L E++G Sbjct: 243 VEVDEAMLQTAYDERESEFNKPERRLIERLVYGNDDSASAAKAQLEAGGTTFETLVEDRG 302 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 +L+DI LG + + + +SIF+ A+ GD + G + ++ I + SF Sbjct: 303 LALADIDLGDLDQGALG--AAGESIFA-AETGDVVGPLQSDLGPALFRINGILAAQETSF 359 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 ++ + + +++ +A V+ +++ LA G +++++++ +V ++ Sbjct: 360 EDARAQLRDELAADRARRVVEAQINDIDDLLAGGATLEDLAKETDMVLGNID-----WSS 414 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 G +AA + + D P L DG +++ E R + L ++ Sbjct: 415 EAGDGIAAYEVFREGAQAITVDDFPK----IEVLEDGGIFAMRLDEVHAPRPQPLAKITE 470 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V W+T T E + ++A L+ + + E +F D+ T ++ R Sbjct: 471 RVSVGWRTQATLEALRAEAEALLSQITAE-SDFADV----DLEADTLTEVTRTGFVADI- 524 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM----MNK 600 I +F + V + + + L + + Sbjct: 525 PPAAILALFEAEKGASVVVDDVTDVLIVRLDDVLAADEDSDDIQALRTQLNNQAATAVAQ 584 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624 DL ++ ++ + + + N + Sbjct: 585 DLFEAYATEIQQRAGIQLDQNALN 608 >gi|70731342|ref|YP_261083.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens Pf-5] gi|68345641|gb|AAY93247.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens Pf-5] Length = 623 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 101/639 (15%), Positives = 229/639 (35%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ + G + + + V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALLALTGFDAIFKATTHNQDAAKVNGEEITQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++ L + L L+ L Q +D G + I Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIDRKLLLQGAQDSKFAFSEGALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS + F + + G ++ T+ + V G ++ + Sbjct: 121 QTPEFQ-VDGKFSPERFDQVIRQLGYTRLQFRQMLTQEMLIGQVRAGLAGSGFVTDAQVL 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA ++ + +++++ + P+ I YI Sbjct: 180 AFARLEKQTR--DFASLTIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIELKKA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + +++LQA Y+K E R ++ + + +E L Sbjct: 238 AFFDQVSVKDEDLQALYQKEIANLS--EQRRAAHILIEVNDKVNEAQAKAKIEEIQARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + S G F+ + D + ++++L K + + FG+ Sbjct: 296 KGESFEALAKEFSQDPGSASNGGDLGFAGPGVYDPTFEKALYALNKD-QVSAPVRTGFGF 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + ++ + ++ E K+LE+ + + + ++ Sbjct: 355 HLIKLLGVEAPEVPSFASLKGKLTRDLKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 K+ G D I ++ F + D + + L + + + Sbjct: 415 KLTVHTSAPFGREGGD-------GIAANRAVIQAAFSTEVLDEGANSTAIELDPETVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 + KE LE V + ++ + +KA +L+ ++GK N Sbjct: 468 RAKEHRKPEQLPLESVASAIRTQLAKEHASAAAKTKAEELIASL-RDGKT----ALNKPV 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSG--------PVEMVKCFPIENGLSYVVFKVTN 578 + + + + +F P P N L + V Sbjct: 523 DGQDWKVAHAVTRGQEGIDPAVLQALFRMTKPESKDKPTFTSVTLPNGNLLVLQLNGVNE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +EK ++ +L + + + L++Q + Sbjct: 583 AAAPTEEEKAQYRRFLASRVGQQDFAAYRKQLENQADIK 621 >gi|167032914|ref|YP_001668145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida GB-1] gi|166859402|gb|ABY97809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida GB-1] Length = 623 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 236/637 (37%), Gaps = 36/637 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ + + + + G ++ +D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFREMLAEEMLIGQLRTGLAGSSFVTDQQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA S + ++++ + +P+ I YI Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSEEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 +++++++EL+A+YEK E R ++ + A+E Q L Sbjct: 238 VFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVTEAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G F+ + D + D+++ L + G + + FGY Sbjct: 296 KGEDFAALAKEFSQDPGSANNGGDLGFAGPGVYDPAFEDALYKL-QDGQVSTPVRTEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + ++I ++ + K+L++ + + + ++ Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 + G G+ + A Q F D+ + + L + + +++ Sbjct: 415 NLKVHTSAAFGREG----GEGITANRSVVQAAFSEEVLDEGAN-STAIELDPETTVVLRV 469 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 KE LE V ++ + K E+ +KA++L+ + + G Sbjct: 470 KEHRKPEQLPLEAVAKNISEHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGW 527 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTNSK 580 + R + + +F K P+ + S VV + V Sbjct: 528 KAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGA 584 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + + L++ +T Sbjct: 585 TATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621 >gi|311106582|ref|YP_003979435.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8] gi|310761271|gb|ADP16720.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8] Length = 653 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 109/663 (16%), Positives = 238/663 (35%), Gaps = 46/663 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IR R W+ I L+++ F + G+ + + +V Q V + F + Sbjct: 1 MFEFIRSH-RRWMQFILLLLIVPSFFLVGIQGYDSFMRAEPELATVNGQPVTRAEFDQAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L Q++G + + L + +L+ L++ L D + IA Sbjct: 60 RNQLEQFRQRLGAQFDPAVIDTPALREGLLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ R ++ Sbjct: 120 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPGEVVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V + + A + W++ K + PE ++ Y++ D Sbjct: 179 ALETALTQQRTVQLRRFAAADFRSQVSATPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287 + +++ +++L + YE+NK ++ PE R ++ A E A Sbjct: 239 AATQGVQVKDEDLASYYEQNKNRFGQPERRRASHIMINLAPGASEDARKAARAKAEDLAK 298 Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ +F +LA ++ G + + LG + + L +IF AK + VI Sbjct: 299 QAAADPAQFAELARKNSQDAGSAANGGDLGWLAPGMLTGP-LEKAIFGQAKD-QVSGVIE 356 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402 G + V+ I+P+ EVK I ++R A+ + E +L + + S+ Sbjct: 357 TPSGLHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQVYDQRDSLQ 416 Query: 403 EISRREKIVSID---------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 + + LP AA+ ++ +F D K Sbjct: 417 PAADTVGLKLRTASGVTREGLLPADKAGPGSAAASPDAALLDNPRVRQVLFSPDVLREKQ 476 Query: 454 H--TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + + L + + +++ PA L++V ++ ++AE + Sbjct: 477 NSGVIELSPDTMLALRVAAVEPAHVPPLDKVSEIIRAKLLDERSAEAAKKAGEAALA--- 533 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLS 570 D + + K + V P + + ++G Sbjct: 534 ------ADQANPAATPEGFGAPVIVSRQDPKDLPRPVLDAVMRLPATTLPAYAGVQSGAD 587 Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 Y + ++ + G +K++ L+ + ++++ L+ +Y V V + Sbjct: 588 YTLARLEKVEAGTVDPADKERLAQQLSGAWGQAENEALVRMLREEYKVQVLPAAAA-VIR 646 Query: 629 GEK 631 GE+ Sbjct: 647 GEQ 649 >gi|148548673|ref|YP_001268775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida F1] gi|148512731|gb|ABQ79591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida F1] Length = 623 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 106/639 (16%), Positives = 239/639 (37%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ + + + + G ++ +D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA S+ + ++++ + +P+ I YI Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 +++++++EL+A+YEK E R ++ + A+E Q L Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G F+ + D + ++++ L + G + + FGY Sbjct: 296 KGEDFAALAKEFSQDPGSATSGGDLGFAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + +++ ++ + K+L++ + + + ++ Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + G + I ++ F ++ D + + L + + + Sbjct: 415 NLKVHTSAAFGREGGE-------GITANRAVVQAAFSEEVLDEGANSTAIELDPETTVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE L+ V ++++ K E+ +KA++L+ + + G Sbjct: 468 RVKEHRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQ 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTN 578 + R + + +F K P+ + S VV + V + Sbjct: 526 GWKAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVND 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + + L++ +T Sbjct: 583 GATATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621 >gi|294666558|ref|ZP_06731799.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603702|gb|EFF47112.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 656 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 107/672 (15%), Positives = 236/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K G+ I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + + +L Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|163736555|ref|ZP_02143974.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter gallaeciensis BS107] gi|161390425|gb|EDQ14775.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter gallaeciensis BS107] Length = 613 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 130/629 (20%), Positives = 253/629 (40%), Gaps = 28/629 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++K S T+V I + +L + +G + SVS V VG Q+V + Sbjct: 1 MAAGMKKLSNTFV-WILMGMLIIGLAGFGAVNFTGSVSS---VAVVGDQEVSVDDYAREL 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + + G V + ++GLD+ +L L++ A LDQ D+GL ++ EI+ Sbjct: 57 QREQRALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEIS 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R P F F+ D + L G+ E + + +RT V G + G + L D Sbjct: 117 RIPAFQDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRD 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + RS D++ ++ + +PS L +++ D + P K I+Y Sbjct: 177 TLTSYVGARRSFDWLTVSEESIALTAVEPSEDELRTFYDANIDQFTLPRTKVITYAALRP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298 +IEI L+ + +Y PE R VE+LVF N+ AD A L G F Sbjct: 237 DALVDEIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDA 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L ++G SL D+ LG + + S +F+ A+ G+ + G + ++ Sbjct: 297 LVADRGLSLQDVDLGDVTMGDL--ASAGQDVFA-AQVGNVVGPLDSDLGPALFRINGRLE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + S ++VK ++ ++ +A ++ + + + LA G +++E+ ++L + Sbjct: 354 ARVTSLEDVKDELRAELATDRARRLIETRSEEINDMLAGGATLEELIDE---PGMELGKI 410 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D+ G +AA Q V +D P L DGS +++ E + R Sbjct: 411 DWHNGSTDG--IAAYDGFRQAASAVTAEDFP----EVAFLEDGSLFAIRLDEELEPRPEP 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 + ++ W++ + + + ++A +L G D G L + + R Sbjct: 465 FADAQDKLRAAWQSKRLQDALEAEAERL------AGMLRNDEDLPEGIELTSETGLTRAA 518 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLT 595 + +++VF V + V T + + + L Sbjct: 519 YIDAA-PQPLMARVFDLAEGDVAVVSDDTATVVVRLTETLPVADTPEMTALAEAMGTQLD 577 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 Q + + L ++ + +++ + + + Sbjct: 578 QALAQALFEAFVQDSQTRAAPRIDPQALN 606 >gi|313499610|gb|ADR60976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida BIRD-1] Length = 623 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 106/639 (16%), Positives = 238/639 (37%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G ++ + + + + G ++ +D Sbjct: 121 QTPEFQ-VDGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA S+ + ++++ + +P+ I YI Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDEEIKAHYDQHAKEFMSPDQVVIDYIELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 +++++++EL+A+YEK E R ++ + A+E Q L Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G F+ + D + ++++ L + G + + FGY Sbjct: 296 KGEDFAALAKEFSQDPGSANSGGDLGFAGPGVYDPAFEEALYQL-QNGQVSAPVRTEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + +++ ++ + K+L++ + + + ++ Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + G + I ++ F ++ D + + L + + + Sbjct: 415 NLKVHTSAAFGREGGE-------GITANRAVVQAAFSEEVLDEGANSTAIELDPETTVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE L+ V ++++ K E+ +KA++L+ + + G Sbjct: 468 RVKEHRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQ 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTN 578 + R + + +F K P+ + S VV + V Sbjct: 526 GWKAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + + L++ +T Sbjct: 583 GAAATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621 >gi|251791833|ref|YP_003006553.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter aphrophilus NJ8700] gi|247533220|gb|ACS96466.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D) [Aggregatibacter aphrophilus NJ8700] Length = 615 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 108/632 (17%), Positives = 243/632 (38%), Gaps = 29/632 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + AS W +K + V F+I ++ L++ + ++ V +++ +++ Sbjct: 3 MEKLNGASNNWASKFLFGFISVTFVISSMAGYLYTRT-DNSAAKVNGEEISQH----AFQ 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + S+ + A+ L ++IL +L+ L Q+ ++ L R+ EI Sbjct: 58 NQYNIASRNLSPQEADSPAQVANLKRQILSSLIDQELLRQYTNELKLGVSDERIKQEIVT 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 SP F + KF + ++ L GI+ + Y + + L + G D Sbjct: 118 SPNFQN-NGKFDNALYQQVLQTNGISAETYASYVREALRLEQLQGGLAITAFSVPAQRDA 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +F+ R++ L+ A ++A + +++ +K ++ PE ++ Y+ Sbjct: 177 LAKLFFQRRNIRLANLSLADEIAKQTVTDAEIQAYYDAHKADFTIPESVKVQYLDLSGAN 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 EK I I++ E+ Y+ NK ++ + + + + +++A + + L+ G F LA+ Sbjct: 237 MEKNINITDVEIAQYYQDNKAQFTTQGQQRLAHIQVKTEQQAQDLYNQLQNGAAFADLAK 296 Query: 302 ----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + L S P V D+ +LA G ++ + Y I V K Sbjct: 297 NHSIDPTSAEKGGDLSWVSAGEFPKV-FEDAANALA-VGQYSQPVKLDNNYHIILVKERK 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + + + VK IA Q+R + + KR+ E S + + + Sbjct: 355 DAGVLPLENVKAQIAAQIRQNLINNQFFSVEKRVAEKAFEDPS--SLKAAADEAGVKVQE 412 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPAR 475 + ++ + A + +F + S +++ + + V++ E Sbjct: 413 TGYFSRN----NIPAALNYPNVASAIFDSEISQGGSNSEPMSVGEQHSLVVRVLEHKAQS 468 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + LEE ++ K K V ++A++ V E + GK G Sbjct: 469 TKSLEEAKAEIIATLKQQKAETVVLAQADKFVQELA-SGKTVD------GVKFGAEQTWV 521 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISY 593 +N+N S + + V+ + G +E+ +F Sbjct: 522 FAENKNPALNNQVFSMAKPTEGKTTYKAAKDTKGDVVIIALDKVTDGKLSEEEQKQFAVQ 581 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + Q L +++ L+++ + ++D+ I + Sbjct: 582 IEQATQVGLQSNLLNALRAKAKIEINDSFINQ 613 >gi|77459915|ref|YP_349422.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] gi|77383918|gb|ABA75431.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] Length = 623 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 98/639 (15%), Positives = 235/639 (36%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ + G + + + V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFQATTHKNEAAKVNGEEISQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++ L + L L+ L Q E + I Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEQSKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS D F + + G + ++ + + + G ++ + Sbjct: 121 QTPEFQ-VDGKFSSDRFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGVAGSGFVTDAQVL 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ LN + P+ ++ + +++++ + P+ I Y+ Sbjct: 180 AFARLEKQTR--DFATLNIKADPSAVKLTDDEVKAYYDEHAKEFMTPDQVVIDYLELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + +++LQA Y+K E R ++ + + +E L Sbjct: 238 SFFDQVAVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKTTEAQAKAKIEEVQARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+KF LA+E + + G ++ + D + +++SL K + + FG+ Sbjct: 296 KGEKFEALAKEFSQDPGSANNGGDLGYAGPGVYDPAFEKALYSLNKD-QVSEPVRTDFGF 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ + +K + +++ + ++ E K+LE+ + + + ++ Sbjct: 355 HLIKLLGVEAPEVPTLASLKDKLTRELKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 K+ G + + ++ F + + + + L + + + Sbjct: 415 KLTVHTSKPFGREGGE-------GVAANRAVVTAAFSTEVLEEGANSTAIELDPETVIVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 + KE + LE V ++ + + A QL+ ++GK D + G Sbjct: 468 RAKEHLKPAQLPLESVAAAIRTQLTKEHASAAAKTHAEQLIASL-RDGKTPLDKAVD-GQ 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVTN 578 S T NR + + +F P K P + +G +V V Sbjct: 526 SWKVTEAANRA---QEGVDPAVLQALFRMPKPAAKDKPTFTSVTLADGSLTIVRLNGVNE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +EK ++ +L + + + L+++ + Sbjct: 583 AAAPTDEEKAQYRRFLASRVGQQDFAAYRKQLEAEADIK 621 >gi|188578367|ref|YP_001915296.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522819|gb|ACD60764.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 675 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 234/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 20 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 79 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA F D KFS D + + LA+ ++ Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 197 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L + A S+A + QW++ Sbjct: 198 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTALVSDAQIKQWYD 256 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 257 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 316 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 317 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 376 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 377 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 434 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T+++ +++ + L + + + + +L Sbjct: 435 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 487 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 488 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 547 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + +L + G+ + + + + + R +FS P Sbjct: 548 AA-ADALLARVQRGETLQALAASEKLQVQPIPGLPRTAPIPTPVAN---RAIFSAPRPTE 603 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 604 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMR 663 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 664 KRYKIQIEEAQL 675 >gi|149203720|ref|ZP_01880689.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035] gi|149142837|gb|EDM30879.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035] Length = 614 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 119/620 (19%), Positives = 260/620 (41%), Gaps = 32/620 (5%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 + + +L V +G ++ ++ VG ++ +++ + + E+ + + G Sbjct: 11 MWVLMGLLIVGLAGFGATNL---SGNVRSIGHVGTAEIDVTTYARALQNEIRALEAERGS 67 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ AR+ G+D +L LV+ A L+ + +GL + +I P F G D F Sbjct: 68 AMSFAEARAAGVDTDVLGRLVARAALEHEADRLGLSIGDENLREQILDIPSFQGLDGSFD 127 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + L + G+NE ++ ++ + T V + G++ + +D + E RS+ Sbjct: 128 REAYRFALDQAGLNESQFEENIRAETASTLVQAAALAGLQTPSTYMDTMMTYLAERRSLA 187 Query: 194 YIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + VL+ + + + PS L + + + ++ PE K I++ +E+ Sbjct: 188 FAVLDRAALQSGLPVPSEDDLKTYHQGHLPDFTTPETKTITFAWVTPAMILDSVEVDEAA 247 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ Y + + ++ PE R VE+LVF + A A + G L E+G ++DI + Sbjct: 248 LREAYAERETEFNMPERRLVERLVFADSAAATRARTRIDDGIALEMLVSERGLDMADIDM 307 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G S+E + + AD +FS A+ G+ I + G + V+ + + +F+E + + Sbjct: 308 GDVSREDLG--AAADPVFS-AQAGEVVGPIDTNLGPALFRVNAVLAAQITTFEEAEPRLR 364 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 ++ +A ++ +++ LA G +++++++ ++L +D+ +G +A Sbjct: 365 EELAADRARRVIEAKIDTVDDLLAGGATLEDVAKE---TDLELGSIDWHPGLTEG--MAG 419 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 V D P L DG +++ + R + LE+V V + W+ Sbjct: 420 YDSFRAAAQAVATGDYP----EVEQLADGGIFALRLDGIVEPRIQPLEDVRDAVLRGWRA 475 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 T + ++ + E + G +F D LG + + R D + + I V Sbjct: 476 EATVTALRAQLEPQLAEL-RAGASFAD----LGLTATEVTDMTRRDYRPEA-PAEFIDTV 529 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT--------QMMNKDLLD 604 F V+ L V ++ + E+D+ ++ L + +DL Sbjct: 530 FDMVQGEVRVIEGNGRL--FVLRLDSIAPPLPAEEDEDLARLRAALQDQAAADLGQDLFQ 587 Query: 605 SVIAYLKSQYSVTVHDNLIQ 624 + ++S+ V + + Sbjct: 588 VLANDIRSRAGVELDQAALN 607 >gi|26989028|ref|NP_744453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida KT2440] gi|24983852|gb|AAN67917.1|AE016424_3 peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida KT2440] Length = 623 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 105/639 (16%), Positives = 238/639 (37%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L ++ L L+S L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS + F + + G ++ + + + + G ++ +D Sbjct: 121 QTPEFQ-VDGKFSAERFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA S+ + ++++ + +P+ I YI Sbjct: 180 AFARLEKQTR--DFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 +++++++EL+A+YEK E R ++ + A+E Q L Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANL--AEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G F+ + D + ++++ L + G + + FGY Sbjct: 296 KGEDFAALAKEFSQDPGSANTGGDLGFAGPGVYDPAFEEALYKL-QDGQVSAPVRTEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + +++ ++ + K+L++ + + + ++ Sbjct: 355 HLIKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + G + I ++ F ++ D + + L + + + Sbjct: 415 NLKVHTSAAFGREGGE-------GITANRAVVQAAFSEEVLDEGANSTAIELDPETTVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE L+ V ++++ K E+ +KA++L+ + + G Sbjct: 468 RVKEHRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIGGLRDG--SIAAGSVHEGQ 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-----SYVVFK---VTN 578 + R + + +F K P+ + S VV + V Sbjct: 526 GWKAYEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + + L++ +T Sbjct: 583 GAAATDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621 >gi|254252159|ref|ZP_04945477.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] gi|124894768|gb|EAY68648.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] Length = 645 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 102/659 (15%), Positives = 240/659 (36%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDAAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + + Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIISSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL A P++A L +++ +K ++ P I Y+++ Sbjct: 180 LAQRLSELAAQQREVQSLVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPATATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASSASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+AE+ + LG ++ + D+ F+L K+G+ + Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KP+ F EVK IA ++ A++ ++ + + Sbjct: 359 GVVESDLGFHILKATEVKPAVLKPFAEVKDQIAADLKQQYAAKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + P + L VF D + ++T + Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFADDAVKNHNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVVDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 TDGFTAAQKISRTQSQGLT----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + QM + ++ +A L+ + V ++ + + DG+ Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQPQDGD 643 >gi|172060885|ref|YP_001808537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] gi|171993402|gb|ACB64321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] Length = 644 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 241/647 (37%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 PAQRLSELAAQQREVQALVLKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + S V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKTKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F +VK IA Q++ A++ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ ++ + P + L VF D S+++T + Sbjct: 419 KTLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + E + E K Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQATELAKKDGAAKLAELQK---- 531 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 +++RM +++ +S V+ + + + + Y ++ Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V G + + + + Q+ + ++ +A L+ + V + Sbjct: 585 RVNAVIPGTAVDPQQLAAAQHQMAQVEAQSEGEAYLAALRDRSKVKL 631 >gi|107028901|ref|YP_625996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116689941|ref|YP_835564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] gi|105898065|gb|ABF81023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116648030|gb|ABK08671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] Length = 645 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 106/647 (16%), Positives = 234/647 (36%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + LS + V Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 LAQHLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 + + +++ Y+ N + + V + +A++ Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ FSL K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ G+ I + +KP+ F EVK IA ++ AS+ ++ + + Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ + + P + L VF D ++++T + Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDAVKNQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ E PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 TDGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTV 618 +V G + + + QM D ++ +A L+ + V + Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631 >gi|308050304|ref|YP_003913870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica DSM 9799] gi|307632494|gb|ADN76796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica DSM 9799] Length = 624 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 103/634 (16%), Positives = 238/634 (37%), Gaps = 40/634 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ AKI L + + F + G+ L + V +++ ++ Sbjct: 1 MLEKIREGSQGVAAKIILGAVILSFALTGVYSYL-GTNSEMLAAEVNGEEITRYDLDQAF 59 Query: 61 KQELGMISQKIGFVVNSERAR---SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + +S A GL + +LD L++ +DQ + D+GL ++ Sbjct: 60 QNEQARMRAQLGEMFDSLSADPTYMAGLRQSVLDRLIAERLIDQKVADLGLRVSDDQIQQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF + + + L + ++ + D + +SR +V +G ++ Sbjct: 120 AIVAMPEFQ-VDGKFDNARYQAVLRQNNLSGVQLRDMLRRDMSRQQLVVGLLGSEFVTDA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + R + Y++++ A + S++ ++ +++ + + PE + Y+ Sbjct: 179 EAQALTALQQQTRDLRYLLVSQADYNAGIEVSDSEISDFYQANQARFATPEEVSVEYVEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------EADEAFQSL 290 V + + ++++E +A Y+ Y PE R ++F Sbjct: 239 AVSDLAGDVSVTDEEAKAFYDSQANAYQQPERRLAAHMLFEGDDAQARAEAALARVRAGE 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + +++ + + L + + + + ++F+L ++G+ + VI +GY I Sbjct: 299 AFAAVAAEASDDTFTAENGGELDWMTPGQM-EPAFDAALFAL-QEGETSDVIKTEYGYQI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + I+ + F EVK I ++ KA + ++L + D + + Sbjct: 357 VNAKKIEAATQRPFDEVKASIIATLQADKAQTEFYGLQQKLADVSFQVP--DSLVETAEA 414 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQI 468 V ++ + ++ + + L F L V + +G + +++ Sbjct: 415 VGGEVKTTEMFSRNNAPAPM----DNPRALAAAFSDSVLLDGMNSEVVQIDNGHILVLRV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 K A LE+V ++ T K +++ ++A + + + I Sbjct: 471 KAHQAAGTETLEQVKERIRAQLVTEKASDKAMTEAAAIEAAWQAGTEPTDVIA------- 523 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF------PIENGLSYVVFKVTNSKVG 582 + R + + VF+ + P + + KVT+ Sbjct: 524 --VAGVGRFGQPD--LDPTLVQSVFTMAKPVDGSVFSHFRLPSGDIAIVALDKVTDGSA- 578 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + L Q M + S+I L++ + Sbjct: 579 EAELVGALKGRLAQQMGEADYRSLIDSLRADAEI 612 >gi|254240198|ref|ZP_04933520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192] gi|126193576|gb|EAZ57639.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192] Length = 621 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 104/640 (16%), Positives = 238/640 (37%), Gaps = 44/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + + ++ + + + G ++ L Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + + + S+ + ++E +K + PE + Y+ Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++ ++L+A Y+K E R ++ + + DE L Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + +GY Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S + +K + ++++ ++ E K LE + + ++ Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + +G D I Q++ F + + + + L + + + Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE +++ LE+V ++++ K AEE + L+ E +EG+ G Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 S +R + + VF K P +G++ YVV ++ Sbjct: 523 SWKVVEAASRG---QEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSE 579 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 EK + +L + + L+ + V Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619 >gi|325914922|ref|ZP_08177254.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria ATCC 35937] gi|325538815|gb|EGD10479.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria ATCC 35937] Length = 685 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 106/672 (15%), Positives = 233/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 30 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPTWW 88 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 89 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 148 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V I F D KFS D + + LA+ ++ Sbjct: 149 LGAEDAGIVIGDATVRDYITNIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 207 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 208 LQQSVIPQAVAESGFATKTEFERLLKLMGETRDVELAML-PAPAADTAPVSDAQIKQWYD 266 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 267 THAQDFRQPETVSIEYVELNAATMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIT 326 Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 + A A + + G F LA+ + LG K + Sbjct: 327 AGSDAAAQKAAEAKAAKLAADAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 386 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ A + A + Sbjct: 387 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQFAAEQLKADADKA 444 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + I +L Sbjct: 445 YADISGKLVDQVYKNPTALEPAAKQVGVPVQTLGPFSRT-------TASGIAANPAVLRS 497 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V ++ + + Sbjct: 498 AFSETLVQDGTVSDPITIAPNHSVMLRVTNHTAEQALPLDKVRDKVTAAVHADRSEKAAA 557 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 558 AVADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 613 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 614 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 673 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 674 KRYKIQIEEAQL 685 >gi|15597002|ref|NP_250496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1] gi|107101237|ref|ZP_01365155.1| hypothetical protein PaerPA_01002270 [Pseudomonas aeruginosa PACS2] gi|9947788|gb|AAG05194.1|AE004606_8 peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1] Length = 621 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 104/640 (16%), Positives = 239/640 (37%), Gaps = 44/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + + ++ + + + G ++ L Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + + + S+ + ++E +K + PE + Y+ Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++ ++L+A Y+K E R ++ + + DE L Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + +GY Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S + +K + ++++ ++ E K LE + + ++ Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + +G D I Q++ F + + + + L + + + Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE +++ LE+V ++++ K AEE + L+ E +EG+ G Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 S +R ++ + VF K P +G++ YVV ++ Sbjct: 523 SWKVVEAASRG---HEGVDPKLLQAVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSE 579 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 EK + +L + + L+ + V Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619 >gi|170733279|ref|YP_001765226.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia MC0-3] gi|169816521|gb|ACA91104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia MC0-3] Length = 645 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 106/647 (16%), Positives = 235/647 (36%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQHLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + LS + V Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 + + +++ Y+ N + + V + +A++ Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ FSL K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ G+ I + +KP+ F EVK IA ++ AS+ ++ + + Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ + + P + L VF D ++++T + Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFANDAVKNQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ E PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 TEGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTV 618 +V G + + + QM D ++ +A L+ + V + Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631 >gi|256556956|gb|ACU83578.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium HF130_AEPn_2] Length = 623 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 101/639 (15%), Positives = 234/639 (36%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V G+ + + S V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMAFTGIEAIFQATTNSQDAAKVNGEEISQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++ L + L L+ L Q D + I Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIERKLLLQGAADSKFSFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F +D KFS + F + + G + ++ T+ + + G ++ + Sbjct: 121 QTPEFQ-EDGKFSAERFDQVIRQLGYSRMQFRQMLTQEMLIGQLRAGIAGSGFVTDQEVL 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ ++ + PA ++ + +++++ + P+ I Y+ Sbjct: 180 NFARLEKQTR--DFATVSVKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKA 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++ +++DELQA YE KE E R ++ + + DE L Sbjct: 238 SFFDQVTVNDDELQALYE--KETANLAEQRRAAHILIEVNDKVTEAQAKAKIDEVQARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + G F+ + D +++ L + + + SFG+ Sbjct: 296 KGESFEALAKEFSQDPGSANNGGDLGFAGPGVYDPEFESALYGLNQD-QVSAPVRSSFGW 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + +++ + ++ E K+LE+ + + + + Sbjct: 355 HLIKLLGVEAPEVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAFEASDLAQPASDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 K+ G + I ++ F + D + + L + + + Sbjct: 415 KLTVHTSAPFGREGGE-------GITANRAVIQAAFSPEVLDEGANSTAIELDPETIVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 + KE LE V T ++ + + + A++L+ G Sbjct: 468 RAKEHRKPEQLPLESVATAIRAQMTKERASAAAKAHADELIANLRDGKLALDKPVD--GQ 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVTN 578 + T R + + +F + K P + +G +V VT Sbjct: 526 AWKVTEAATRG---QEGVEPAVLQALFRMAKPVAKDKPTFADVTLRDGSLMIVRLNSVTE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK+++ +L + + + L+++ + Sbjct: 583 GAAPTEEEKEQYRRFLASRVGQQDFAAFRKELEAKADIK 621 >gi|116049755|ref|YP_791438.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa UCBPP-PA14] gi|313110502|ref|ZP_07796387.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 39016] gi|115584976|gb|ABJ10991.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa UCBPP-PA14] gi|310882889|gb|EFQ41483.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 39016] Length = 621 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 104/640 (16%), Positives = 237/640 (37%), Gaps = 44/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + + ++ + + + G ++ L Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + + + S + ++E +K + PE + Y+ Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++ ++L+A Y+K E R ++ + + DE L Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + +GY Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S + +K + ++++ ++ E K LE + + ++ Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + +G D I Q++ F + + + + L + + + Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE +++ LE+V ++++ K AEE + L+ E +EG+ G Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 S +R + + VF K P +G++ YVV ++ Sbjct: 523 SWKVVEAASRG---QEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSE 579 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 EK + +L + + L+ + V Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619 >gi|330503121|ref|YP_004379990.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] gi|328917407|gb|AEB58238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] Length = 615 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 94/636 (14%), Positives = 228/636 (35%), Gaps = 42/636 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR SR W+AKI + ++ + G + S + V + + + Sbjct: 1 MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAADVNGDTITLNELNQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++G ++ L + L L+ L Q D G + I Sbjct: 61 EMQRRQLLQQLGRDFDASLLDEKLLREASLKGLIERKLLLQAANDAHFAFSQGSLDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D +F F + + G ++ + + + + Sbjct: 121 QTPEFQ-VDGRFDASRFDQVIRQMGYTRLQFRQMLEEEMLIGQLRAGLGASSFVTEQEAR 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R D+ L + PA + ++A + +++++ + +PE + Y+ Sbjct: 180 AFANLERQTR--DFASLTIKADPAAVELNDADVKAYYDEHASEFMSPEQVVLEYVELQKD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK 295 ++E+S+++L+ YE E R ++ EA +E + + G+ Sbjct: 238 SFFDQVEVSDEDLKPLYESEIANL--AEQRQAAHILIEGDDEAARSKIEEIKKRVDAGED 295 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E + G ++ + D + ++++L ++G + + FG+ + Sbjct: 296 FAALAKEFSQDPGSAVDGGDLGYAGPGVYDPAFEKALYAL-QQGQVSEPVKSEFGWHLIK 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + ++ SF +K +A + + + E K+LE+ + + + ++ Sbjct: 355 LLGVQAPEVPSFDSLKDKLARDFKAQQVEQHFVEATKQLEDAAFQASDLAQPAQEL---G 411 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 +++ G++ + A Q+L F D + + T+ L + + V++KE Sbjct: 412 LEVKTSAAFGREGGATGITA---NRQVLQAAFSPDVLEDGANSSTIELDPSTVVVVRVKE 468 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 LE+V ++ + + ++ + + + + A+ Sbjct: 469 HNKPEQLPLEQVAESIRGHLLQERASAAAKAEGEKQLAAAEAG--------EAVAANWQV 520 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVGPVQ 585 R + +F P P G++ YVV ++ V Sbjct: 521 QEAATRS---QDGVEPKVLQALFRMPKPAKAGEPTFAGVTLNNGDYVVLRLDGVNVPEET 577 Query: 586 EKDKFISY----LTQMMNKDLLDSVIAYLKSQYSVT 617 D+ ++ L + ++ L+++ + Sbjct: 578 LADEELAMYRNFLASRAGQQDFAALRKQLEAKADIE 613 >gi|56697010|ref|YP_167372.1| hypothetical protein SPO2145 [Ruegeria pomeroyi DSS-3] gi|56678747|gb|AAV95413.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 614 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 127/617 (20%), Positives = 252/617 (40%), Gaps = 26/617 (4%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 I + +L +G + TV VG Q V ++ ++E+ I + G Sbjct: 12 FVWILMGLLIAGLAGFGAVNL---SGTVRTVAQVGEQTVSVDAYARELQREIRGIEAQTG 68 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + + R +G+D+ +L LV+ A LD + +G+ + EI + P F G D KF Sbjct: 69 QPLQMSQVRDLGIDQAVLARLVAIAALDNEVAGLGISIGDENLSREIVQIPAFQGVDGKF 128 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + L G++E E+ + +RT V G + G+ + D +F RS Sbjct: 129 DPEGYRYALDNAGLSEAEFEADLRRESARTLVQGAIMEGLVMPDTYADTLAQFVGARRSF 188 Query: 193 DYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 ++ + + +A P A + ++ +D + P KR++Y L ++E+ Sbjct: 189 TMATVDTGALDSPVAAPDAAQIEAFYADNQDQFMLPRSKRLTYALLTPEMLLDRVELDEG 248 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDI 310 ++ YE+ + Y PE R VE+LVF +Q A+ A ++ G F L E +G SL+D+ Sbjct: 249 AVRRLYEERESSYQQPERRLVERLVFADQASAESAMAQVEVGGATFELLVEGRGLSLTDV 308 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +G + + + + A A+ GD + G + V+ + +F+ V+ + Sbjct: 309 DMGDLTAQDLGAAAEAVFA---AEVGDVVGPLPSDLGPALFRVNGTLDARITTFESVEAE 365 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + +++ +A ++ + L + LA G +++E+++ ++L +D+ G V Sbjct: 366 LRDELAGERARRLIEAQAESLNDMLAGGATLEELAQD---TDMELGQIDWTEDSSDG--V 420 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 AA + V D P L DG+ +++ E + R L+ V W Sbjct: 421 AAYAGFRAVATEVAEGDFP----EIGFLEDGAVFALRLDEELEPRPEPLDSARERVIAAW 476 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 +T + KA + + +G G N + R + +D + Sbjct: 477 TAAETRRALQDKAASVATGLATDGDF-----TATGLPHRVENGLTRTAFIDGT-PFDFME 530 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVI 607 QVF+ +K ++ V + Q K + +TQ + ++L D + Sbjct: 531 QVFAMQPGDLKVIAGDDAAFIVRLEEELPPADTDELTQMKRALSAQMTQALAQNLFDIYV 590 Query: 608 AYLKSQYSVTVHDNLIQ 624 +++ T+ + Sbjct: 591 RDAQTRAQPTLDQRALN 607 >gi|218892241|ref|YP_002441108.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa LESB58] gi|218772467|emb|CAW28249.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa LESB58] Length = 621 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 104/640 (16%), Positives = 238/640 (37%), Gaps = 44/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + + ++ + + + G ++ L Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + + + S + ++E +K + PE + Y+ Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++ ++L+A Y+K E R ++ + + DE L Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + +GY Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S + +K + ++++ ++ E K LE + + ++ Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + +G D I Q++ F + + + + L + + + Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE +++ LE+V ++++ K AEE + L+ E +EG+ G Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 S +R ++ + VF K P +G++ YVV ++ Sbjct: 523 SWKVVEAASRG---HEGVDPKLLQAVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSE 579 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 EK + +L + + L+ + V Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619 >gi|146307082|ref|YP_001187547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] gi|145575283|gb|ABP84815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] Length = 615 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 93/634 (14%), Positives = 227/634 (35%), Gaps = 38/634 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR SR W+AKI + ++ + G + S + V + + + Sbjct: 1 MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAAEVNGDTITLNELNTAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++G ++ L + L L+ L Q D + I Sbjct: 61 EMQRRQLLQQLGRDFDASLLDDKLLREASLKGLIERKLLLQAAGDADFAFSQAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D +F F + + G + ++ + + + + Sbjct: 121 QTPEFQ-VDGRFDAARFDQVIRQMGYSRLQFRQMLEEEMLIGQLRAGLGASSFVTEQDAR 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R + + PA + +++ + +++++ + +PE + Y+ Sbjct: 180 AFANLERQTRDFASVTIKAD--PAAVELADSDVQAYYDEHASEFMSPEQVVLEYVELHKD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK 295 +IE+S+D+LQ YE E R ++ A +E + G+ Sbjct: 238 SFFDQIEVSDDDLQPLYESEIANL--AEQRQAAHILIEGDDAAARTKIEEIKARVDAGED 295 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F LA+E + + G ++ + D + +++++L + G + + FG+ + Sbjct: 296 FAALAKEFSEDPGSAADGGDLGYAGPGVYDPAFEEALYAL-QTGQVSEPVRSDFGWHLIK 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + ++ SF +K +A + + ++ E K+LE+ + + + ++ Sbjct: 355 LLGVQAPEVPSFDSLKDKLARDFKAQQVEQRFVEATKQLEDAAFEASDLAQPAQEL---G 411 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 ++L + + G++ + A Q F +D + T+ L + + V+ KE Sbjct: 412 LELKVSEAFGREGGATGITANRQVLQAAFSPEVLEDGTN-SSTIELDPSTVVVVRAKEHR 470 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 LE+V ++ + + ++ +L+ G++ GA+ Sbjct: 471 KPEQLPLEQVAESIRAHLLQERASAAAKAEGEKLLAAAR--------AGESEGANWQVQE 522 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVGPV--- 584 R + +F P G++ YVV ++ Sbjct: 523 AATRS---QDGVEPKVLQALFRMSKPTTAGEPSYAGVTLNNGDYVVLRLDGVNAPDEALT 579 Query: 585 -QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +E + ++L + ++ L+++ + Sbjct: 580 SEELAMYRNFLASRAGQQDFAALRKQLEAKADIE 613 >gi|254247971|ref|ZP_04941292.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia PC184] gi|124872747|gb|EAY64463.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia PC184] Length = 645 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 106/647 (16%), Positives = 235/647 (36%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + LS + V Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 + + +++ Y+ N + + V + +A++ Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ FSL K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ G+ I + +KP+ F EVK IA ++ AS+ ++ + + Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ + + P + L VF D ++++T + Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQLAPTSPLNNP---KFLAAVFANDAVKNQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ E PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 TDGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTV 618 +V G + + + QM D ++ +A L+ + V + Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631 >gi|206560356|ref|YP_002231120.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] gi|198036397|emb|CAR52293.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] Length = 644 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 105/659 (15%), Positives = 240/659 (36%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADE 285 + + +++ Y+ N + + V + +A++ Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ FSL K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 ++ G+ I + +KP+ F EVK IA ++ AS+ ++ + + Sbjct: 359 GIVQSDLGFHILKATEVKPAVVKPFAEVKDQIAIDLKQQYASKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ + + + + L VF D ++++T + Sbjct: 419 KTLQPAADKYKLTIQTATVTPTPNPQL---PPTSPLNNAKFLAAVFANDSVKNQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + + +S V+ + + + + Y ++ Sbjct: 535 TDGFAAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + QM D ++ +A L+ + V ++ + DG+ Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGTTASQQQDGD 643 >gi|113867510|ref|YP_725999.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] gi|113526286|emb|CAJ92631.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] Length = 644 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 115/651 (17%), Positives = 234/651 (35%), Gaps = 53/651 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + V++F F+ +G+ + S V + + N Sbjct: 1 MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAISVQEIDNVV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q +G + + K +LD L+ + + L ++ EI+ Sbjct: 60 RDQSERARQVLGASYDPRQFEGPDARKAVLDQLILQRVMASAVAREHLTVSDAKLLEEIS 119 Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P KD K ++ L +G+ +++ L+ + Sbjct: 120 NLPAIAQLPRTKDGKVDDKAYLQLLQSQGMTPEQFDARMRFELATQQLGASVAATAFVPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 LLD+ + R V ++ A P A L +++ ++ + PE ++ Y+L Sbjct: 180 SLLDRLIAVRDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQAFSVPEQAKVEYLL 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294 ++ +EL++ Y+ N ++ E R ++ K+A A + K K Sbjct: 240 LSGEALAATQAVTPEELKSYYDSNIARFRIDEQRRASHILISAPKDAPAAQRQAAKDKAT 299 Query: 295 -----------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 F +A ++ G + LG + + D++++L K G + Sbjct: 300 KLLEDLRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKP-FEDAMYAL-KDGQVS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 V+ +GY I ++ IKP+ T + V+ ++ ++R A +K E A G Sbjct: 358 DVVETDYGYHIIKLTGIKPAETKPLEAVRTELEAELRKQFADKKFAEQAD------AFGN 411 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY-----KEQLLFRVFGKDDPLSKDH 454 ++ E + K + L +V + A+ ++LL +F D +K + Sbjct: 412 TVYEQADSLKPAADKFKLTIQTADNVTRQPNPALGAQSPLNNDKLLKALFSDDAIKNKRN 471 Query: 455 T--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 T V + + + +I E PA RK EEV V++ + + AE + K Sbjct: 472 TEAVQVAPNTLVAARIVEYRPAAVRKFEEVEAKVREGYIAQQAAELARKDGEARLAALKK 531 Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLS 570 D GA ++R E + V + + Sbjct: 532 -----ADSADGFGA----VQTVSRAKAEG--MPPKAVEAVLRADANKLPAVVGVDLGAEG 580 Query: 571 YVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Y V+++T ++ L+Q+ + L + LK++ V + Sbjct: 581 YAVYRITKVSQPTQANPAQRQAEAQQLSQLAGQTDLQAFYESLKARSKVKM 631 >gi|85703584|ref|ZP_01034688.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217] gi|85672512|gb|EAQ27369.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217] Length = 604 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 123/620 (19%), Positives = 264/620 (42%), Gaps = 32/620 (5%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 + + +L +G ++ +V VG ++ +++ + + E+ + + G Sbjct: 1 MWVLMGLLIAGLAGFGATNL---SGTVRSVGHVGTAEIDLTTYARALQNEIRALEAERGS 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ AR+ G+D +L L++ A L+ + +GL + +I P F G D F Sbjct: 58 AISLAEARAAGVDTDVLSRLIARAALEHEADRLGLSIGDANLREQIVEIPAFQGLDGSFD 117 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + L + G+NE ++ ++ + T V + G++ LD + E RS+ Sbjct: 118 REAYRFALDQAGLNETQFEENIRAETASTLVQAAALAGLQTPATYLDTMMTYLAERRSLA 177 Query: 194 YIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + VL+ + + + PS L + + ++ PE K+I++ +E+ Sbjct: 178 FAVLDRSALQSGLPVPSEEDLQAYHQANLPSFTTPETKKIAFAWITPAMIIDSVEVEEAA 237 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ Y + + ++ PE R VE+L+F + + A A + +G L E+G +SD+ L Sbjct: 238 LRDAYAEREAEFNLPERRLVERLIFADTEAATRARARIDEGIALEMLVSERGLEMSDVDL 297 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G ++E + S A+ +FS A+ G+ I S G + V+ I + F+E + + Sbjct: 298 GDVAREDLG--SAAEPVFS-AEAGEVVGPIDTSLGPALFRVNAILAAQVTPFEEAEPQLR 354 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 +Q+ +A ++ +++ LA G +++++++ +++L +D+ +G +AA Sbjct: 355 DQLAGDRARRVIEAQIDTVDDLLAGGATLEDVAKE---TNMELGSIDWHPGLTEG--MAA 409 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 + V D P V L DG +++ R + LE+V V W+T Sbjct: 410 YDSFREAADAVATGDYP----EVVQLADGGIFALRLDGIDEPRVQPLEDVRDAVLNGWRT 465 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 T E + ++ + E + G +F D LG + + + R D + + I V Sbjct: 466 KATVEALKTQVEPQLAEL-RAGASFAD----LGLTATDISNMTRRDYRPEA-PAEFIDTV 519 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--------FISYLTQMMNKDLLD 604 F V+ E L V ++ + +D+ + + +DL Sbjct: 520 FDMEEGEVRVIEGEGRL--FVLRLDSIAPPAEDAEDEDLTRLRSALQDQVAGDLGQDLFQ 577 Query: 605 SVIAYLKSQYSVTVHDNLIQ 624 + ++++ V ++ + Sbjct: 578 VLANDIRARAGVELNQAALN 597 >gi|254476823|ref|ZP_05090209.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11] gi|214031066|gb|EEB71901.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11] Length = 613 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 126/628 (20%), Positives = 261/628 (41%), Gaps = 28/628 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M ++K S+T+V I + +L V +G + SV V VG Q+V + Sbjct: 1 MAAGMKKLSKTFV-WILMGMLIVGLAGFGAVNFTGSVGS---VAVVGEQEVSVDDYAREL 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E + + G + + ++GLD+ +L L++ A LDQ D+GL ++ EI+ Sbjct: 57 QREQRALEAQTGQRMPIAQLTTLGLDRVVLGRLIAIAALDQESSDLGLSIGDENLFEEIS 116 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R F FS + + L G+NE+ + + +RT V G + G + L D Sbjct: 117 RIEAFQDPAGNFSRENYQFALENIGLNERAFEADLRRESARTLVQGAVMVGTEMPDTLRD 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + RS D++V++ + +P+ L +++ D + P K I+Y Sbjct: 177 TLTNYIGARRSFDWLVIDPASIALTAVEPTEEELRAFYDANIDQFTLPRTKVITYAALRP 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298 +IE+ LQ + ++Y PE R VE+LVF +Q A A L G F Sbjct: 237 DALVDEIEVDEAALQQLFNDRSDEYQVPERRLVERLVFADQDAAASAKAQLDINGTTFEA 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L E +G +L DI +G + + + A +FS A+ G + G + V+ Sbjct: 297 LVENRGLTLQDIDMGDVTMGDLG--TAAQDVFS-AEVGTVVGPLDSDLGPALYRVNGRLE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + +V+ ++ ++ +A ++ + + + LA G +++E+ + ++L + Sbjct: 354 ARVTQLDDVRDELRAELATDRARRLIETRAEDINDMLAGGATLEELEQE---PGMELGQI 410 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D+ G +AA + V +D P L DGS +++ E + R Sbjct: 411 DWHTGSSDG--IAAYDGFRSVASAVTIEDFP----EVEFLEDGSLFALRLDEELEPRPEP 464 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 E+ ++ W+ + E + ++A++ V + G + + L + + R Sbjct: 465 FEDAQDKLRAAWQDNRLQEAMKAEADR-VAALLRSGDDLPE-----DLILTSEEGLTRTA 518 Query: 539 NENKFFGYDGISQVFSGPVEMVKCF--PIENGLSYVVFKVTNSKVGPVQE-KDKFISYLT 595 + + +VF V P + ++ ++ ++ + + + L Sbjct: 519 FIEAA-PQEMMIRVFDMAPGDVAVVSDPRATAVVRLIEELPVAETPEMAALSEAMGTQLD 577 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 Q + + L ++ + ++++ + + + Sbjct: 578 QALAQALFEAFVQDVQTRAAPRIDPQAL 605 >gi|229591358|ref|YP_002873477.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25] gi|229363224|emb|CAY50307.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25] Length = 624 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 99/640 (15%), Positives = 234/640 (36%), Gaps = 41/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + ++ G+ + S V V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNSKQDVAKVNGEEITQTELSQA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q++G ++ L + L +L+ L Q D + I Sbjct: 61 VDMQRRQLMQQLGKDFDASLLDEKLLREAALKSLIDRKLLLQGAADSKFGFSEAALDQVI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ + F + + G + ++ T+ + V G ++ + Sbjct: 121 LQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDSEV 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 R + R D+ +N + PA ++ + +++++ + P+ I Y+ Sbjct: 180 LAFARLEKQTR--DFATVNIKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSL 290 ++ + +DELQA Y+ KE E R ++ + + +E L Sbjct: 238 SSFFDQVAVKDDELQAAYQ--KETANLAEQRRAAHILIEVNDKVTDAQAKAKIEEIQARL 295 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+KF LA+E + S G F+ + D ++++L+K + + +FG Sbjct: 296 AKGEKFEALAKEFSQDPGSASNGGDLGFAGPGVYDPDFETALYALSKD-QVSAPVRSTFG 354 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + + + ++ +F +K + +++ + ++ E K+LE+ + + + + Sbjct: 355 WHLIKLLGVEAPQVPTFASLKDKLTKELKTQQVEQRFVEATKQLEDAAFEASDLAQPASD 414 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 K+ G + + ++ F + D + + L + + Sbjct: 415 LKLTVHTSAPFGREGGE-------GVAANRAVVTAAFSPEVLDEGANSTAIELDPETIIV 467 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ KE + LE V ++ + + + A++L+ G Sbjct: 468 LRAKEHLKPAQLPLESVAAAIRTQMAKERASAAAKTHADELIASLRDGKTPLNQPVD--G 525 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVT 577 + T R + + +F P K P + +G +V V Sbjct: 526 QAWKVTEAATRS---QETIDPAVLQALFRMPKPAAKDKPTFTTVTLADGSLVIVRLNGVN 582 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +EK ++ +L + + + L+++ + Sbjct: 583 EAAAPTDEEKAQYRRFLASRVGQQDFAAYRKQLETKADIK 622 >gi|242277701|ref|YP_002989830.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio salexigens DSM 2638] gi|242120595|gb|ACS78291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio salexigens DSM 2638] Length = 633 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 110/640 (17%), Positives = 242/640 (37%), Gaps = 38/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M++I+R+ +++W KI ++ F+ +G F+ + + V Q VP F+ Sbjct: 1 MMDILRQNAQSWGIKIAFGIIIAVFIFAFGAGG--FNGNTDPVIAYVNDQPVPTQEFMQV 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ + + ++S++ +S K +L+ LVS L+ E +GL + + I Sbjct: 59 YRETAEALRAQ-NPNLDSDQLQSPEFKKAVLEQLVSQKLLEAEAEKLGLSVSNSELSYSI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++ P F KD KF +++ + L ++ + + + + ++P+ Sbjct: 118 SKIPAFADKDGKFDMNLYQAFLQSRAMSAATFENDMRNSALISKLQEYVTMPVKPTEADA 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E +DY ++ S+ + +++ D + P + YI F Sbjct: 178 RALFDSAAEKVQIDYYYVSGADFVKNIKISDKQIEDFYKANPDKFTIPARSVVKYIAFTP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAF 287 E ++ +E++A YE NKE + ++ +K+ + Sbjct: 238 EELSINETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKIKKVL 297 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K G+ F +LA++ S LG F + + ++ F+L KKG+ + + Sbjct: 298 AKAKSGQDFGKLAKKYSEGPSSSKGGELGWFGRGAMVKP-FEEAAFAL-KKGEISEPVRT 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + +++ + +VK +I + + KA++ + + + LA G +D++ Sbjct: 356 RFGWHLIKIDDVREAGQKDIDQVKDEINSLIAQEKAADSITDKLDHAIDLLASGMKLDKV 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 S I + L + D P++ DG Y+ Sbjct: 416 SEELGIAFKKSEQATVENLSRAFGMTESAAQTIIALPKGNATDMPVA-------IDGGYI 468 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V+ + +P L++ D++ + +KA L+ + S E K K + Sbjct: 469 LVEKEADVPPSLSPLKDQKQDIESFLSQQQAMNLAKAKALALMGQLSNE-KTEAAALKVI 527 Query: 525 GASLLTTNQINRMDNENKFFGYD---GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 L T+ R + M + F + G ++V +V Sbjct: 528 KKDLKTSEPFGRDGFVPGLGMNPKLAQAALAAKKDQWMSEVFELPGG--FIVARVDERIP 585 Query: 582 GPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +KD + + Q ++ + + L+S+ V Sbjct: 586 PKEEAWAAQKDMVMDAIFQQRANEVFGAFLNELRSKAKVE 625 >gi|254234899|ref|ZP_04928222.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa C3719] gi|296389804|ref|ZP_06879279.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PAb1] gi|126166830|gb|EAZ52341.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa C3719] Length = 621 Score = 362 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 104/640 (16%), Positives = 237/640 (37%), Gaps = 44/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + + ++ + + + G ++ L Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + + + S + ++E +K + PE + Y+ Sbjct: 180 SFARLEKQTR--DFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++ ++L+A Y+K E R ++ + + DE L Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLS--EQRDAAHILIEVNDKVGDEQAKAKIDEIKARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + +GY Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S + +K + ++++ ++ E K LE + + ++ Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + +G D I Q++ F + + + + L + + + Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE +++ LE+V ++++ K AEE + L+ E +EG+ G Sbjct: 468 RVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAEL-REGRT----SSAAGE 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 S +R + + VF K P +G++ YVV ++ Sbjct: 523 SWKVVEAASRG---QEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSE 579 Query: 582 GPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 EK + +L + + L+ + V Sbjct: 580 PEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619 >gi|58580660|ref|YP_199676.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425254|gb|AAW74291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 675 Score = 362 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 234/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 20 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 79 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA F D KFS D + + LA+ ++ Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 197 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L + A S+A + QW++ Sbjct: 198 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTAPVSDAQIKQWYD 256 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 257 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 316 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 317 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 376 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 377 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 434 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T+++ +++ + L + + + + +L Sbjct: 435 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 487 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 488 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALLLDKVRDKVTAAIRADRAEKAAA 547 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + +L + G+ + + + + + R +FS P Sbjct: 548 AA-ADALLARVQRGETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 603 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 604 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMR 663 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 664 KRYKIQIEEAQL 675 >gi|78046641|ref|YP_362816.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035071|emb|CAJ22716.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 656 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 108/672 (16%), Positives = 238/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 238 GHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 K A A ++ + G F LA+ + LG K + Sbjct: 298 AGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGAMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K G+ I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + + +L Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARLQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|325920988|ref|ZP_08182874.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC 19865] gi|325548522|gb|EGD19490.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC 19865] Length = 656 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 235/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGDNFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V I F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYITGIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAIAESGFATKAEFERLLKLMGETRDVELAMLPPPA-ADTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + + + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHAQDFRQPETVTIEYVEINAAKLQPATAADEATLRKRYEEEKGRFVEPDQRLTSHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 + + K G F LA+ + LG K + Sbjct: 298 AGSDPAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKGAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFAM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLALGTS-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + + ++ +++ + L A + + I +L Sbjct: 416 FADVSGKLVDQVYKNPTVLEPAAKQVGLPVQTLGPFSRA-------DASGIAANPAVLRS 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V +T + + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHGAEQALPLDKVRDKVIAAIHADRTEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF + + G P +++ L+Q+ + + + + ++ Sbjct: 585 GKRSVGKVELDGGRFAVFVIAKATPGDLKQMPAEQQTMLREQLSQIDSNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|311695072|gb|ADP97945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium HP15] Length = 614 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 121/634 (19%), Positives = 245/634 (38%), Gaps = 39/634 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ +AK+ + +L V IWG+ + SG V +V + + F+ Sbjct: 1 MLQDIRNNAQGTIAKVIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E ++ + + +LD+L+ L Q GLE + + I Sbjct: 61 QMESQRRLSRMENP-DPSMLDEDQIRTDVLDSLIQEQVLIQDANAQGLELNDADIDALIT 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F D +F+ D FV+ + G+ E+ + K + V ++ + Sbjct: 120 QMPQFQ-VDGQFNRDRFVATVRNMGMGVGEFREAMRKQYVVNQIRAGIVQSGLVADENAE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + RS + + V S+A + ++E+ ++ PE +YI + Sbjct: 179 QLLQIQNQTRSFRVLDIPASSVADAVSVSDADVEAFYEENSGAFQQPERVDAAYITLSLG 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKKF 296 + IE+ + ELQA YE+ S E R ++ +ADE + L G+ F Sbjct: 239 ALAESIEVDDAELQAYYEQQAADLAS-EERRASHILIEEGSDADETMATIQERLAAGESF 297 Query: 297 IQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA E + LG + I +++F+L ++G+ + + SFG + Sbjct: 298 ADLAREYSIDTVSAEDGGDLGYAGRG-IYAEPFEEALFAL-EEGEVSEPVRTSFGVHLIR 355 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + +++ S S E++ + ++ KA E+ E L + + + + Sbjct: 356 LEDVRESEVPSLDEMEDQLRRELAREKAREQFAEVRAELADSAYAADDLAGPAEELGLEV 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQIK 469 + V G P+ L R +D L + L D + ++ Sbjct: 416 REANGVTRDGGQ--------APFDHAGLVRQLFSEDVLDAGYNTELIDVGDNVSVVARVN 467 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + A L++V ++ + KT E +S +A+ ++ + + G++ IG Sbjct: 468 KYHEAEQLPLDQVRDQIRTTLEQRKTREALSERADAIIADL-ESGQSPEGIG-----EWS 521 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVFKVTNSKVGPV 584 + + R +E G + QVFS P K + + +VT+ +V Sbjct: 522 SYEGLARNASEA---GPAILQQVFSLPRPADGARFGKAVMANSAAVIALDEVTDGQVSED 578 Query: 585 -QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 E ++ +L + + + +L+++ V Sbjct: 579 GTELNQLREFLASLEGQREYAAYQQFLRNRAEVE 612 >gi|302878839|ref|YP_003847403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] gi|302581628|gb|ADL55639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] Length = 631 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 116/654 (17%), Positives = 257/654 (39%), Gaps = 47/654 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + + + R +I L+++ +PF +G+ S + +V +K+ F + Sbjct: 1 MFDFVHEKRR--FVQIVLLLIILPFAFFGVDSYRHSGDTDAP-ATVNGEKITKQEFDTAM 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+ + Q +G + + + ILDNLV+ L + + GL ++ I Sbjct: 58 RQQQDKMRQVLGENFDPALFEKAEMKRAILDNLVAQRLLLERAKAAGLTVTDEQIAQVIG 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F KF + S LA + + + L+ + + SN + D Sbjct: 118 GIDAFKD-GGKFDKARYTSALAAQNMTPAIFEARVKDELTGQQMRDAYTQNGYVSNAVAD 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R V + +R A A +A + +F+ + ++ PE ++ Y+ F + Sbjct: 177 NIIAINEQQRIVSIAPILSRSFMAQAKVDDAAIKTYFDANQKEFQVPEQVKVEYVKFSIA 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 + K +I +E++ Y++++ ++ S E R ++ + +A++ Sbjct: 237 DLIAKADIKAEEVRQYYDEHQSEFASAEQRQASHILLVVAATAPQAEQDAVKAKAEKLLA 296 Query: 289 SLKK-GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +K+ KF LA ++ G +++ LG F + + +++FSL K G+ + ++ Sbjct: 297 QVKQEPGKFADLARQNSQDPGSAVNGGDLGMFGRGMMVKP-FDEAVFSL-KAGEISGLVK 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FGY I ++ IK S F EV+ +IA ++R KA++ E + + + D Sbjct: 355 SDFGYHIIKLTAIKASRATPFNEVQAEIAGKLRQQKAADSFAELADKFSNTVYEQS--DT 412 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461 + + + + + K E+ + +++ +F D + +T V + Sbjct: 413 LKPAAVLAGVKVEQSGWLSKGAAAGEI----WTAKMMQAIFSDDVIKNHRNTAAVEVAGS 468 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + ++ E PA R L +V +K+ + + L+ + + GK D Sbjct: 469 TLVAARLLEHKPAAVRGLADVADSIKQKLLLKIALDMSVKQGTMLLGQLQQGGKAALDWS 528 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTNSK 580 + + ++ + ++F + + E Y + ++ K Sbjct: 529 VAQPVTHGQHSALD----------AAMVRKLFQADGSKLPQYVGSETADGYTIVRIDAVK 578 Query: 581 VGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 G + + ++ L QM +L + IA K + + L + + EK Sbjct: 579 EGAKPDEVKRSRYAQQLRQMAGDELFQAYIADAKKDAKIKL--KLPEAAAETEK 630 >gi|149910316|ref|ZP_01898960.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Moritella sp. PE36] gi|149806676|gb|EDM66643.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) [Moritella sp. PE36] Length = 636 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 112/640 (17%), Positives = 238/640 (37%), Gaps = 35/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE R+ S+ AKI L + V F + G+S L + + +V + + N Sbjct: 1 MLEKFREGSQGPGAKIILGAVIVTFALAGVSSYL-GGGSNQSAATVNGVDISTQALENQV 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + G + + ++ L+ L++ L Q D+ L ++ G Sbjct: 60 RTDRSRLESQQGESFAVRWEQPEFQNQVRQQSLNTLIAQNLLQQMTNDLALSIGDEKIRG 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F D F+ + ++S L + G+ ++++ ++ + V Sbjct: 120 YIFAMQEFQ-TDGVFNDERYISLLRQNGMTPAQFVERLRVDFAQQQLTDALVNSEFSLPN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + Q + R + +++ A ++A + ++E K ++ P+ + YIL Sbjct: 179 EVKQLAALQNQQRELSQLIVPANKFAADIVVTDAEVNSYYEDSKAFFQTPQQASVDYILV 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSL 290 D+ IE+ D + Y ++ Y + R V ++ Q++A + + Sbjct: 239 DMKNISAGIELDADAAENYYNEHLSSYTQEDKRKVAHILVAFNDDESAAQEKAQDLLTQI 298 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDF-TPVIHGSF 346 + G F +LA+ G + ++ I D + + F+L GD T ++ F Sbjct: 299 QSGADFAELAKTSSDDTFSGENGGELDWLEKDIMDPAFETAAFALQNDGDVTTELVRSDF 358 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEIS 405 G+ I + ++ +F +VK I +++ +A E + L E+ + S+D S Sbjct: 359 GFHIIKLLAVESGKVKAFTDVKTTIETRLKNEQAVSHFDELAETLAEQAFEVPDSLDVAS 418 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSY 463 + + L + A ++ +F +D + + D Sbjct: 419 EETGLTIVSTELF-------SANAIPAPLNDPRVAATLFDQDFIAEALNSEIINISDEQS 471 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + V+I E P + L EV ++ K ++ S + + G++ + Sbjct: 472 IVVRINEYKPQTTKALAEVNDEIVARLTATKAEQKALSFMTSVSAKI-NAGESVVAELAS 530 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS----YVVFKVTNS 579 + AS ++R D F +S++FS P + I S + K ++ Sbjct: 531 MDASFTAPEWLSRFDYSKADF--KVLSKLFSMPKPAAEQASIATETSLNGDVTLLKFSSV 588 Query: 580 KVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +E + L M + D +I L V+ Sbjct: 589 RDAKINAEEAARLADTLKNMNAQADYDMLIQTLIKAADVS 628 >gi|269468957|gb|EEZ80538.1| Parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster bacterium] Length = 613 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 108/626 (17%), Positives = 250/626 (39%), Gaps = 26/626 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR ++ W+A + + ++ VPF ++G+++ F+ + + V S+ ++ F+N + Sbjct: 1 MLSSIRNKTKGWLAYLIVGLITVPFALFGINEY-FTGTSNIIVASIDGDEISKEDFLNEF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++ ++E L + ++ ++V+ L QF + + + I Sbjct: 60 NPQKRRLQQRLSERYDTEF--DAVLKQSVMRDMVNRRLLSQFSDGLDYATTSVELQAMIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + LF D KFS D + L G + EY K L+++ + F+ + L Sbjct: 118 SNDLFQ-VDGKFSIDTYQKLLRLNGYSTAEYESIKLKELTQSQIKYNFLDSAFITPSALK 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R YI ++ + + + ++ K ++ P+ +I ++ + Sbjct: 177 NLQALNDQQRKFSYIQIDADNYLDKVKVNVKSVKDFYNNQKASFFDPQKVKIDFVELSLE 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K I+I++DEL YE K+++ + R + ++ Q+ A + + G F +LA Sbjct: 237 KIAKNIKINDDELFNFYEDEKDRFTTEGERKAQHILVQTQETAKKVVGLINAGGDFAKLA 296 Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +E + LG F+K + +F + ++G+ + + FGY I ++ I Sbjct: 297 KEYSEDTGSKDDAGDLGFFTKGVMV-PEFETKVFGM-QEGEVSGAVKSEFGYHIIKLNKI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP SF+ + ++ + + + + +L LA S++E+S + +V Sbjct: 355 KPGSVKSFESARSELTKLYTQNQVQKSLYDLTDQLAN-LAYEVSLEEVSDQMNLVVNTTQ 413 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 D + K+ + + +L + + L ++ V++KE R Sbjct: 414 FFAKNTNDYE-KKFVDAAFSDVVLNK-------GENSEIIELSKDKFIVVRLKEKTVKRQ 465 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + +EV ++ K + V + A +V + + + + R Sbjct: 466 KTFDEVKDEINKHLTVLLAKTFVDNIAKDIVASLNNNDDSVNKLMDKNQLKWNDVGWVER 525 Query: 537 MDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592 + +++VF+ + V S VV ++ K + Sbjct: 526 DSKKTDV---TVVNKVFALSKPNNGDTVYSAQSLGRSSAVVISLSAVKTSDSKPSKGLER 582 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618 L + ++ +++ L++ + V Sbjct: 583 SLLSFESNEMFAAILKTLRANAEIKV 608 >gi|312961785|ref|ZP_07776283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens WH6] gi|311284044|gb|EFQ62627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens WH6] Length = 624 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 100/640 (15%), Positives = 230/640 (35%), Gaps = 41/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + ++ G+ S + V V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGTNKQDVAKVNGEAITQPELSQA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q++G ++ L L L+ L Q D + I Sbjct: 61 VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ + F + + G + ++ T+ + V G ++ + Sbjct: 121 LQTPEFQ-VDGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEV 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 R + R D+ +N + PA ++ + +++++ + P+ I Y+ Sbjct: 180 LAFARLEKQTR--DFATVNLKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSL 290 ++ + +DELQA YE KE E R ++ + + +E L Sbjct: 238 SSFFDQVTVKDDELQAAYE--KETANLAEQRRAAHILIEVNDKVTEAQAKAKIEEIQARL 295 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+KF LA+E + + G F+ + D ++++L K+ + + +FG Sbjct: 296 AKGEKFDALAKEFSQDPGSANNGGDLGFAGPGVYDPDFETALYAL-KQDQVSAPVRSTFG 354 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + + + ++ +F +K + +++ + ++ E K+LE+ + + + + Sbjct: 355 WHLIKLLGVEAPEVPTFASLKDKLTRELKAQQVEQRFVEATKQLEDAAFEASDLAQPASD 414 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 K+ G + + ++ F + D + + L + + Sbjct: 415 LKLTVHTSAPFGREGGE-------GVAANRAVVTAAFSPEVLDEGANSTAIELDPETIIV 467 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ KE LE V ++ + + + A++L+ G Sbjct: 468 LRAKEHRKPAQLPLESVAAAIRTQMAKERASAAAKTHADELIASLRDGKTPLNQPVD--G 525 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--FKVT 577 + T +R + + +F P K P + +G +V V Sbjct: 526 QAWKVTEAASRS---AEAVDPAVLQALFRMPKPAAKDKPTFTTVTLADGSLVIVRLNGVN 582 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + +EK ++ +L + + + L++Q + Sbjct: 583 EASAPTDEEKAQYRRFLASRVGQQDFAAYRKQLETQADIK 622 >gi|84500963|ref|ZP_00999198.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597] gi|84391030|gb|EAQ03448.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597] Length = 612 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 131/594 (22%), Positives = 257/594 (43%), Gaps = 24/594 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 V SVG Q++ + + + EL + + G ++ E+A+++G+D+++L L++ Sbjct: 30 TGTVRNVGSVGDQEITVQEYGRTLQSELRAMEAQTGEAISLEQAQAMGIDRRVLSRLLTN 89 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 A D + +GL + + P F G D +FS D + + R G+ E+ D Sbjct: 90 AAFDLEADRVGLSIGDETLVRLVRDIPAFRGVDGQFSRDGYEFAIERSGLTVGEFEDGIR 149 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215 K +R + G G + LD ++ E R V + + + + + +PS L Sbjct: 150 KETARALLQGAVFSGRALPDAYLDTVLNYFAERRRVTWARVESSQLDGESFEPSEEDLRA 209 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ +++ PE KRI+Y ++EI D L+ EYE ++Y PE R VE+L Sbjct: 210 LYDELIEDFTLPERKRITYAWLTPEMILDQVEIDEDLLRQEYEARSDQYNRPERRLVERL 269 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 ++ +Q A EA L+ G+ F L EE+G +LSDI +G S+ + + D +F+ A+ Sbjct: 270 IYADQGRAAEAADRLENGEADFETLVEERGLTLSDIDMGDVSRADLG--AAGDPVFA-AE 326 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + G V+ I + +F+E D+ ++ +A +V + + E+ Sbjct: 327 SGEIVGPVETDLGPAFFRVNGILSAEETTFEEALPDLRQELAFDRARRRVANEAEPAEDM 386 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G +++E++ + L VD+A +G +AA + R+ D + Sbjct: 387 LAGGATLEELAAE---TDMRLGSVDWAEGQSEG--IAAYEGFDAAAARL----DETAYPE 437 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L DG +++ E +P E V V+ W+T +T + + ++A + + + +E Sbjct: 438 VMRLTDGGIFAMRLDEVLPPEPAPFENVRERVRNIWETRQTMQRLRTQAGEHI-DRLRES 496 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 +F +LG + T + R + + VF + + V Sbjct: 497 ADFD----SLGLEVQTEEALTRQGSVMGA-PEAFVETVFQMEEGQIAMVDGFGAVLIVRL 551 Query: 575 KVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + L+Q + +D+ ++S+ V + I Sbjct: 552 DEVLPPNPEDPDTAAMRNNLSQQLHSSVTQDVNRLFTQDIRSRAGVELDQEAIN 605 >gi|319941578|ref|ZP_08015904.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis 3_1_45B] gi|319804948|gb|EFW01790.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis 3_1_45B] Length = 633 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 111/636 (17%), Positives = 247/636 (38%), Gaps = 32/636 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R+ R W+ I +V + F++ G+ +++V VG + +F + Sbjct: 1 MLQAFREHKR-WLMVIAMVFIIPSFVVTGIYSYNRMTQSDNSIVKVGEVSITPENFDLAK 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+L + Q++G ++ + + +L L+ A ++Q + + + I Sbjct: 60 RQQLERLRQEMGESFHASLLDTPQAREDLLRMLMDEAAINQVVAKNHISVSEAQAVALIK 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + D KFS + + L +G ++++++ L++ VV L + Sbjct: 120 NADALK-VDGKFSAERYEQFLRSQGKSDQQFVMEIRNDLAKEAVVSGVSATYPVPKALTE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q E RSV +VL ++ + ++ + ++ +PE+ + Y++F Sbjct: 179 QFYEILTEERSVRTLVLPADDYLDKVAVTDEEIKAYYNAHLKDFLSPEHIKAQYVVFSPD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLKKG 293 + + S D+L+ YE+NK+++ PE R ++ +K+A+E +K Sbjct: 239 AFSNQ-KASLDDLKTFYEQNKQRWTVPEERRASHILIEFGDDKEAARKKAEELANEVKAD 297 Query: 294 KK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F +LA+ + G + L F + + + D++F+ AKKGD I FG+ Sbjct: 298 PSKFAELAKANSVDTGSAEQGGDLSFFGRGVMTK-AFEDAVFN-AKKGDIVGPIETEFGW 355 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRR 407 + +V++I P+ F++VK +I + +A + + +++ + + Sbjct: 356 HVIYVTDIHPAAVEPFEDVKSEIEREYAQQQAIREFSTHADEFTNLVYEQSDTLEPAAAK 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMW 465 + V G + E + +FG + K +T + + + Sbjct: 416 FGLKVETADFVTRNGVT---DPELSQIITEHVAESLFGTEALKEKRNTSAIEVSGNRLVS 472 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ E P +R L+EV + K K ++ +A Q L ++ K+ G + Sbjct: 473 ARVVEYFPEAERPLDEVKGLITDALKRQKAG-AMAIEAGQAKLASVQQAKSVDGFGDEMW 531 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPV 584 S R + + V + + + + +G V++ K Sbjct: 532 IS-------RRAPQNQEVTVVNAALAVPTAKLPIYTNAVLADGSYVVIYVKEAKKHEAKP 584 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 ++ L+ + + + L+ V V Sbjct: 585 EDLAGITRELSSVYGESDRRGYLDALEHSLGVVVQR 620 >gi|104781017|ref|YP_607515.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48] gi|95110004|emb|CAK14709.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48] Length = 619 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 107/639 (16%), Positives = 227/639 (35%), Gaps = 44/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + + S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q ED + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKMLREAALKGLIDRKLLLQGAEDAKFAFSEAALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KFS + F S + + G ++ + + + + G ++ ++ Sbjct: 121 QTPEFQ-VDGKFSAERFDSVIRQMGYGRMQFREMLAQEMLIGQLRTGLAGSSFVTDKQVE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R + PA S+ + ++++ + P+ I YI Sbjct: 180 AFARLEKQTRDFAALTFKAD--PAAVKVSDEEVKAHYDQHAKEFMTPDQVVIDYIELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++++DEL+A YEK E R ++ + +E Q L+ Sbjct: 238 AFFDQVKVNDDELKALYEKEIANLG--EQRHAAHILIEVNDKTTDAQAKARIEEIQQRLE 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F +LA+ + + G F+ + D + D+++ L K + + FGY Sbjct: 296 KGEDFAKLAKAFSQDPGSANAGGDLGFAGPGVYDPTFEDALYKLNKD-QVSAPVRTQFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ SF +K + +++ + ++ E K+LE+ + + + ++ Sbjct: 355 HLVKLLGVQAPDVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAFEASDLVQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + G + I ++ F + + + + + L + + + Sbjct: 415 GLKVQTSAAFGREGGE-------GITANRAVIQAAFSEQVLEESANSNGIELDPETVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE LE V ++ + K E+ +KA++L+ + K G Sbjct: 468 RVKEHRKPEQLPLEAVAKNISQHLAKEKATAELKAKADKLIAGLREGS------VKAAGQ 521 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK---VTN 578 S R + VF K P + S VV + V Sbjct: 522 SWKVQEAATRG---QDGIDPAELQAVFRMAKPESKDKPVYGSVVLGDGSLVVLQLKGVNE 578 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + L+ +T Sbjct: 579 GAAATDEEKAQIRRYLASRAGSQDFAAYRKLLEGSADIT 617 >gi|126439578|ref|YP_001059347.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 668] gi|126219071|gb|ABN82577.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 668] Length = 644 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 99/646 (15%), Positives = 230/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V +VL + A P++A ++ +++ +K + E I Y+++ Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N Y + V + + +A++ Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KK + + Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK IA +R A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + + +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|121601506|ref|YP_993264.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei SAVP1] gi|124383444|ref|YP_001029291.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10229] gi|126449228|ref|YP_001080774.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10247] gi|167738127|ref|ZP_02410901.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia pseudomallei 14] gi|217421364|ref|ZP_03452868.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 576] gi|237812671|ref|YP_002897122.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei MSHR346] gi|251766653|ref|ZP_04819742.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei PRL-20] gi|254179433|ref|ZP_04886032.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1655] gi|254198164|ref|ZP_04904586.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei S13] gi|254297318|ref|ZP_04964771.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 406e] gi|254358198|ref|ZP_04974471.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei 2002721280] gi|121230316|gb|ABM52834.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei SAVP1] gi|124291464|gb|ABN00733.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10229] gi|126242098|gb|ABO05191.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei NCTC 10247] gi|148027325|gb|EDK85346.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei 2002721280] gi|157806973|gb|EDO84143.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 406e] gi|169654905|gb|EDS87598.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei S13] gi|184209973|gb|EDU07016.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1655] gi|217395106|gb|EEC35124.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 576] gi|237505475|gb|ACQ97793.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei MSHR346] gi|243065067|gb|EES47253.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei PRL-20] Length = 644 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 99/646 (15%), Positives = 230/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V +VL + A P++A ++ +++ +K + E I Y+++ Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N Y + V + + +A++ Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KK + + Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK IA +R A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + + +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|21241842|ref|NP_641424.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306] gi|21107222|gb|AAM35960.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306] Length = 656 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 107/672 (15%), Positives = 236/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPAWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRTRFEQARMQERQRQGEKFDPRSFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPA-ADAAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGTDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K G+ I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + + +L Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|53723660|ref|YP_103105.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC 23344] gi|67642012|ref|ZP_00440775.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8 horse 4] gi|254177616|ref|ZP_04884271.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC 10399] gi|254200054|ref|ZP_04906420.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei FMH] gi|254206388|ref|ZP_04912740.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei JHU] gi|52427083|gb|AAU47676.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia mallei ATCC 23344] gi|147749650|gb|EDK56724.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei FMH] gi|147753831|gb|EDK60896.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei JHU] gi|160698655|gb|EDP88625.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC 10399] gi|238523056|gb|EEP86497.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8 horse 4] Length = 644 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 98/647 (15%), Positives = 231/647 (35%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQR--LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSTSDGAVRQTL 118 Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284 + + S+ +++ Y+ N Y + V + + +A+ Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +K F Q+AE+ + LG ++ + D KK + + Sbjct: 299 QLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G FG+ I +++KP+ EVK IA +R A++ ++ + + Sbjct: 359 GVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 419 KSLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 476 DIGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + +S ++ + + + + Y +F Sbjct: 535 TAGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIF 584 Query: 575 KVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V + + + L Q+ + + +A L+++ V + Sbjct: 585 RVNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|330972584|gb|EGH72650.1| periplasmic folding chaperone [Pseudomonas syringae pv. aceris str. M302273PT] Length = 627 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 234/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KF+ D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQAPEFQ-VDGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + + G ++ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ SF +K + N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + + +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ + +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575 G + R + + +F P K P + S+V+ + Sbjct: 526 QEGRDWKVMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L+ + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLSSREGQQDFAAYRAQLESKAKIE 625 >gi|167646732|ref|YP_001684395.1| rotamase family protein [Caulobacter sp. K31] gi|167349162|gb|ABZ71897.1| rotamase family protein [Caulobacter sp. K31] Length = 655 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 122/641 (19%), Positives = 252/641 (39%), Gaps = 23/641 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML R +++ +A + +L V F ++G+SD G + + G + + F + Sbjct: 1 MLAGFRSFAKSPLAVVLFGLLIVSFAVFGISDVFRHPPGKWVIAA-GSRDTTPADFKARF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH----GRVW 116 + + G + + A G+D+++L L +L + I +G+ + Sbjct: 60 ESYRKQQQAQ-GQTLTPDLAVEHGVDRQMLTQLALQESLAELIRKMGVRPSDKLVGDTLR 118 Query: 117 GEIARSPLFHGK----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 ++A P + KF ++ + LA+ + Y +++ + + Sbjct: 119 EQLASLPPGQRPFDPINGKFDSKMYAALLAQNDLTPARYEASLRDEIAQAHLFSAVATSL 178 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 R + + E R + +N V A P++A L + +++ + PE + + Sbjct: 179 RAPRIYSALQAAYALEGRDLAAFAINPATVEKPAPPTDAQLQAFMKEHAADLTRPETRVL 238 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 S F E + + ++ Y K+ + E R+ Q+V P+ K A Q L K Sbjct: 239 SVARFSAKALENSVTVPEADVVKTYNFRKDTLGTAETRSFVQIVAPDAKAAAVIAQRLAK 298 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G + +A GK I + K +PD +AD++F+L G + I G G + Sbjct: 299 GDQPAVVASAFGKQPVFID--TKPKSALPDRKVADAVFALT-AGQVSAPITGDLGVSVVK 355 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 ++ I P+ S + + I +++ A K E + ++ G S+ + + + + Sbjct: 356 LTKITPAAMPSLESQRPAIEAELKAQAAQAKAYEQTQAYQDAHDAGASLIDAATKAGALV 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + + G D G+ V + + F + + G Y V++++ I Sbjct: 416 LTTSPIAATGVDQTGQPVPGL--TPDAVKAAFELPSG-GESELIEAGKGEYFAVRVEKVI 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P+ L E+ + + W K E + +KA+ L E K+G++ + + G + Sbjct: 473 PSAMPALAEIRGPLAQQWMVTKLLEAMKAKADAL-GERVKKGESLEAVAASAGTKVQRVP 531 Query: 533 QINRMDNEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 INR + + G D + F + G ++V +V G + + Sbjct: 532 NINRENARQFQGLGRDLLIATFGAKPGVPFTARAPQG-GFLVAQVEKVHPGAPMQIAQIT 590 Query: 592 SYL----TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + +Q + +D+ DS A K+Q V+ NL + + Sbjct: 591 QAMRGQTSQGLMRDVADSAQAAAKAQLKTKVNLNLAREAIG 631 >gi|66044996|ref|YP_234837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae B728a] gi|63255703|gb|AAY36799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae B728a] Length = 627 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 234/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADARFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KF+ D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + + G ++ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ SF +K + N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + + +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ + +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575 G + R + + +F P K P + S+V+ + Sbjct: 526 QEGRDWKVMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L+ + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLSSREGQQDFAAYRAQLESKAKIE 625 >gi|330952802|gb|EGH53062.1| periplasmic folding chaperone [Pseudomonas syringae Cit 7] Length = 627 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 97/643 (15%), Positives = 230/643 (35%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + + G ++ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKSKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + + +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ + +K L+ + K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLREGKIPLA--AK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575 G + R + + +F P K P + S+V+ + Sbjct: 526 QDGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625 >gi|218781789|ref|YP_002433107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] gi|218763173|gb|ACL05639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] Length = 624 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 114/639 (17%), Positives = 242/639 (37%), Gaps = 43/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML ++R+ + +W+ KI L ++ + F+ +G + + + V + + ++F Sbjct: 1 MLSMMREHATSWIIKILLGIIVLVFVFSFG---YSSFQNRGNRLAVVNGETISRNTFERM 57 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +K +K G + + L + + D+LV L Q D+G++ + +I Sbjct: 58 YKNVYDYNREKFGDSFDYDL-----LRQNVFDDLVDNVLLLQHARDLGMQVTEDELVQDI 112 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A++ +F +F + L+R G+ K+Y + + T + + + S+ Sbjct: 113 AQTQVFQTSSGQFDPKRYEYILSRSGVTSKDYEAEKARNMLSTKIRSYLMAMAQVSDEEA 172 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Q + + S+ Y++ + + + +++ + +Y ++SY+ F+ Sbjct: 173 RQWYNWDAKQVSMKYVLFEPSTFTDVVA-TEDQIQAYYDAHSADYETLPMAKVSYLYFNP 231 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAF 287 + K++ I +E++ Y+ N + Y+ + ++ K+ A E Sbjct: 232 KDFLKEVSIPQEEIELFYDDNLDSYYEDQQVHARHILISLAKDAPEEKAAEALKKAQEIE 291 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K G+ F +LA+E + + LGSF + + D+ F+L G+ + + Sbjct: 292 AKAKAGEDFAELAKEFSDGPTAKNGGDLGSFPRGRMVKP-FEDAAFAL-NAGEISDPVRT 349 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ I V IK + T EV+ I +++ A ++ + + L S ++ Sbjct: 350 DFGFHIIKVEEIKEARTKELSEVEDSIRSKLAADVALDEAYNAAEAAFDNL---LSDMDM 406 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 ++ ++L D+ + + A + +++ VF D V D + Sbjct: 407 AKAAADAGVELKTTDYFTE----QGPAGVANPQEMADEVF--DMYKDSFSDVLQFDDGFY 460 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 V + + PA +LEEV V D K A+ KA + LE K GK+ D Sbjct: 461 IVWMLDKKPAIIPELEEVKAKVAADVKKEVMAQAAIDKAAEF-LEEVKGGKSMEDAAAAY 519 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM--VKCFPIENGLSYVVFKVTNSKVG 582 ++ T R ++ P+E V V K Sbjct: 520 NVTVKNTGFFKRGGYIPDLGDEPAVASAAFLADAANPYPDAPVEGVKGVFVTCVLEEKYP 579 Query: 583 PVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617 + Q + +L+ + L+ + V Sbjct: 580 EADGFADQKESIKQRLLWGKRSRVLEDTLDVLRERGEVK 618 >gi|319763570|ref|YP_004127507.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans BC] gi|330824229|ref|YP_004387532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans K601] gi|317118131|gb|ADV00620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans BC] gi|329309601|gb|AEB84016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans K601] Length = 640 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 108/646 (16%), Positives = 235/646 (36%), Gaps = 47/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IRK ++ WV + +++ F++ G+ F GS V V + + + + N+ Sbjct: 1 MLESIRKHTK-WVMGLLFLLIIPSFILVGIDRNYFG-GGSPVVARVDGKDITQADWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I + ++++ S L+ LV L + + + R+ E+ Sbjct: 59 RMESDRIRAQSPG-IDAKLLDSPQARYATLERLVRDRVLQVAAQKMHMLTSDARLARELQ 117 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + +G+ + +S + V+G V Sbjct: 118 SIPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDISVSQVMGSVVASAFAGPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A F+ R + + + ++A L +++ + ++ PE + Y++ Sbjct: 178 ESKLALDALFQRREIQVARFDPSAFVSKVAVTDADLEAYYKAHLAKFQQPEQATVEYVVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-- 295 D+ + I ++ D+L+ Y++N + E R ++ K+A A + K K Sbjct: 238 DLDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHILVNAAKDAPAAEREKAKAKAQE 297 Query: 296 -----------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F ++A ++ G + S LG F + D++FSL KKG+ + Sbjct: 298 LLAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGHGAMVKP-FEDAVFSL-KKGEISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FGY + ++++K SF+E++ + ++R +A K E + + Sbjct: 356 VVETDFGYHVIMLTDVKTPRQPSFEELRPSLEAELRQQQAQRKFAEVAETFANTVYEQPD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V + +A +LL +F D SK +T + Sbjct: 416 SLQPVADKLKLKIHTATGVTRTSAPGEKGALA----NPRLLEALFQPDSVQSKRNTEAIE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + +I PA L++ V+ + K+AE + Sbjct: 472 IGNSTLAAARITAYQPAMTLPLDKAREQVRSLYVADKSAEFARQEGQ----------VRL 521 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 + + + + + + + P + + + + G Y V K Sbjct: 522 AAWKASPDGAAGLSAPVTVSRDRPQNQPRAVVDAALRAPTDKLPVWTGVDLAGQGYAVLK 581 Query: 576 VTNSKVGPVQEKDKFISYLTQMMN---KDLLDSVIAYLKSQYSVTV 618 V ++ Q + + LK ++ V + Sbjct: 582 VNRIVPRDAADEATARMEREQYLQLWVSAEAQAYYELLKQRFKVQI 627 >gi|126452826|ref|YP_001066614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106a] gi|242317337|ref|ZP_04816353.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106b] gi|126226468|gb|ABN90008.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106a] gi|242140576|gb|EES26978.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1106b] Length = 644 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 99/647 (15%), Positives = 232/647 (35%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQR--LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284 + + S+ +++ Y+ N Y + V + + +A+ Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAE 298 Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +K F Q+AE+ + LG ++ + D KK + + Sbjct: 299 QLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G FG+ I +++KP+ EVK IA +R A++ ++ + + Sbjct: 359 GVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 419 KSLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 476 DIGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVAGEAARLAQQAGEAKLAELRKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + +S ++ + + + + Y +F Sbjct: 535 TAGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIF 584 Query: 575 KVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V + + + L Q+ + + +A L+++ V + Sbjct: 585 RVNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|53719046|ref|YP_108032.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei K96243] gi|76809896|ref|YP_333865.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710b] gi|254189176|ref|ZP_04895687.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei Pasteur 52237] gi|254259824|ref|ZP_04950878.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710a] gi|52209460|emb|CAH35412.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei K96243] gi|76579349|gb|ABA48824.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710b] gi|157936855|gb|EDO92525.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei Pasteur 52237] gi|254218513|gb|EET07897.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 1710a] Length = 644 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 99/647 (15%), Positives = 232/647 (35%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ R R + FL+++ +P I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQR--LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGT 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 59 LRQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTL 118 Query: 120 ARSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P D F + + LA +G+ +Y + L+ + V Sbjct: 119 LSDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPK 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V +VL + A P++A ++ +++ +K + E I Y++ Sbjct: 179 SVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLV 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284 + + S+ +++ Y+ N Y + V + + +A+ Sbjct: 239 YSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAE 298 Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +K F Q+AE+ + LG ++ + D KK + + Sbjct: 299 QLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G FG+ I +++KP+ EVK IA +R A++ ++ + + Sbjct: 359 GVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 419 KSLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 476 DIGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVAGEAARLAQQAGEAKLAELRKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + +S ++ + + + + Y +F Sbjct: 535 TAGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIF 584 Query: 575 KVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V + + + L Q+ + + +A L+++ V + Sbjct: 585 RVNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|289679420|ref|ZP_06500310.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae FF5] gi|330897791|gb|EGH29210.1| periplasmic folding chaperone [Pseudomonas syringae pv. japonica str. M301072PT] gi|330939710|gb|EGH43005.1| periplasmic folding chaperone [Pseudomonas syringae pv. pisi str. 1704B] Length = 627 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 233/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + + G ++ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + + +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ + +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575 G + R + + +F P K P + S+V+ + Sbjct: 526 QEGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625 >gi|167836273|ref|ZP_02463156.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis MSMB43] Length = 644 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 97/646 (15%), Positives = 229/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ ++ V +V K+ + F Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDENANVAAVNGHKITRAEFDGML 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVIASLKKPDGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V +VL A P++A ++ +++ +K + E I Y+++ Sbjct: 180 IARRLTELAEQQREVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N Y + V + + +A++ Sbjct: 240 SQAAAVAAAQPSDIDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KK + + Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEVSG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK IA ++ A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIAADLKQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYKL---TIQTAAVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 VGNNTLIAARVTNHQPSAVPALDAIKDRVRAKVVADEAARLAKQDGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAADKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + ++ +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSQVKL 631 >gi|237803592|ref|ZP_04591177.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025574|gb|EGI05630.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str. 1_6] Length = 627 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 101/643 (15%), Positives = 232/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPALLDEKLLRESALKGLIDRKLLLQGASDAKFTFTDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 +I ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQILQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G ++ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEFSQDPGSSSKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + ++++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKGKLTDELKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + S T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSSTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + L V ++ V +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLASVADKIRAQLVKEHATAAVKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575 G + R + + +F P + K P + S+V+ + Sbjct: 526 QDGREWKVMEAVTRS---QEGVDPAVLQTLFRMPKPVGKDKPEFASITASDGSFVIVRLN 582 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|166710933|ref|ZP_02242140.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 656 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 235/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q ++ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERKRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDATVREYIANIQAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L + A S+A + QW++ Sbjct: 179 LQQSVIPQAVADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHTQDFRQPEAVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ +A + + Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADTDKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + I +L Sbjct: 416 FADVSGKLVDHVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGIAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQAYVKQMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|256830955|ref|YP_003159683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium baculatum DSM 4028] gi|256580131|gb|ACU91267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium baculatum DSM 4028] Length = 632 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 109/647 (16%), Positives = 252/647 (38%), Gaps = 37/647 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+I+R+ +++W KI ++ F++ ++ V +V + F F Sbjct: 1 MLDILRQGAQSWGIKILFGIIIAVFVLA-FGMNRVQNDQTTVVATVNDSPILFRPFQERL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L + + + +E +G ++IL+ +V + Q +GL + EI Sbjct: 60 QRSLELARSQ-NPNLTAEILAQMGFKRQILEQMVIEELMMQQAAKLGLTVSKEELAKEIH 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + N F + + L + ++ Y + + + R Sbjct: 119 LIPAFQNESNVFDPASYQNVLRANNLTPGKFESEYMRGMVMDKLRTYVGLPGRLGEDQAR 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++ Y++ + + ++A + +++E K NY P +I Y+L Sbjct: 179 DFYTYGRSTATISYLMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDYLLLTPA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288 +S +E + Y + KE++ E L+ + ADE A + Sbjct: 239 TLADPAAVSPEETEKYYAEQKEQFKIEEQVKASHLLVRVDENADEESVEKAMQTIKAAQK 298 Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L GK F ++A E+ + + LG F + + D+ F+L +KG + + Sbjct: 299 DLAAGKSFAEVAAQYTEDPSGTQTGGELGWFGRGRMVKP-FEDAAFAL-EKGAVSEPVRT 356 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + V + K + +++ V DIAN + +A+E +++ + E + +G +D + Sbjct: 357 QFGFHLITVEDTKSAGYENYESVASDIANIIAEDRAAEILQDRLDQALEMVLVGEPLDAV 416 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + + +++ D+ K+ +++ + + +F ++ + + DG Y+ Sbjct: 417 VKAIGLK-LEIRESDYFTKNQGPRDLPGL--SPENAQVLFDLPQDITTQSPLPIADG-YL 472 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +E + + LE V ++ + + + A++ LE +G+ Sbjct: 473 LATKREQVAESVKPLEAVKAEIVAAITRDEALKVAKAAADKD-LELLLKGETL------T 525 Query: 525 GASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 GA++ T R N ++ + F YV+ K Sbjct: 526 GATVKETEPFGRQGTINGLGMNQLLATKAFETKSGAWLPEAYAFPEGYVLAKAIQVTPPA 585 Query: 584 ----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQR 625 EK+ +++ L + + + + +A L+++ V + + L++ Sbjct: 586 DEDWAAEKELWLTSLNERAEEQTMQAFVADLRAKADVRITNPALLEN 632 >gi|134277039|ref|ZP_01763754.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 305] gi|134250689|gb|EBA50768.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei 305] Length = 644 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 98/646 (15%), Positives = 229/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V +VL + A P++A ++ +++ +K + E I Y+++ Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N Y + V + + +A++ Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KK + + Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK IA + A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLTQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + + +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|89069544|ref|ZP_01156888.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516] gi|89044879|gb|EAR50969.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516] Length = 613 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 127/624 (20%), Positives = 258/624 (41%), Gaps = 27/624 (4%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 +++T + L +LF + +G + T+ SVG +++ + +++ Sbjct: 4 NSAKTVATWVILGLLFFGLIGFGATGL---SGNVRTLGSVGEKEIAIQDYARELNRQINQ 60 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + Q+ G + G+D+ +L +L+S TLD ++GL A GRV E+ SP F Sbjct: 61 LQQQTGQTLTFSEVEQFGIDRMVLSSLISRRTLDNEAAELGLSAGDGRVAAEVRASPAFQ 120 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 G D F + + L R G+ E EY + L+R + V + S+ D + Sbjct: 121 GLDGSFDREGYKFALDRNGLTEGEYESEIREQLARGLLQRAVVAAIPESDTYADVIAAYL 180 Query: 187 FENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E RS + L+ + I +P++A L ++E D + PE + I+Y Sbjct: 181 GETRSFVWAELDEDDLAEPIPEPTDAELQAYYEANLDAFTRPETREITYAALTPDMILDD 240 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG 304 +E+ +LQA Y++ + Y PE R VE+L+FP++ A A ++ G+ F +G Sbjct: 241 VEVDRADLQALYDERIDDYVRPERRLVERLIFPDEDAAAAALARIESGESDFDSEVRARG 300 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 L+DI LG +++ + + +++F+ A+ GD G + ++ + P+ V Sbjct: 301 LDLADIDLGDVAQDRLG--AAGEAVFA-ARPGDVVGPHPTDLGPALFRMNAVLPAQEVPL 357 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +E + D+ ++ A +V+ + + + +A G +++++S R ++L + + Sbjct: 358 EEAEADLRVELAADVARRRVQSVGEEIADLIAGGATLEDLSER---TDLELGTLTYTDDS 414 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 G A E R P V L DG +++ E LEE Sbjct: 415 RDGLAAYAAFRAEAASAR------PEDFPELVELEDGGIFALRVDEVREPAPIPLEETRE 468 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V W+ + +E + ++A ++ + G+ + + ++R Sbjct: 469 AVAAAWREAQRSERLLARAEEMAATIEETGRFTDQMPAPI-----AEIGVDRRAVIGGT- 522 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----K 600 ++QVF + E+G V + T + + L + + Sbjct: 523 PPGFVAQVFEMEEGEARAVETESGAIVVQLRGTRAAYPDNARVAADAATLAERAQGGVVQ 582 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624 D+ D +++ V + + ++ Sbjct: 583 DIFDVFTRAVQTSTEVRLDQSAVE 606 >gi|326316510|ref|YP_004234182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373346|gb|ADX45615.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 642 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 105/640 (16%), Positives = 237/640 (37%), Gaps = 37/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ V + +++ F++ G+ F S S+ V V + + N+ Sbjct: 1 MFESIRKHSK-VVMIVLFLLIIPSFVLVGIDRNYF-TSKSAVVARVDGHDITQDDWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I + V++ S L+ LV + + L ++ + Sbjct: 59 RMETDRIRAQSPS-VDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQ 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + + +G+ + + ++ + LS + V+G +G + Sbjct: 118 GIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFENNVRRELSLSQVMGGVMGSAFAAQE 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A ++ R + + + A P++ L +++ ++ +R PE+ + Y++ Sbjct: 178 PARLALDSLYQRREIRVARFDAKDFAAKVTPTDDELQAYYKAHEAQFRQPEHADVQYVVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 D+ I +S D+L++ Y++N E+ E R ++ K+A A + K Sbjct: 238 DLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKAKARAQA 297 Query: 294 ---------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F ++A ++ G + S LG F + + D+ FS+ KKGD + Sbjct: 298 LLEQVRKAPNTFAEVARKNSQDSGSAPSGGDLGFFKRGDMVKP-FEDAAFSM-KKGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 ++ +GY I ++++K +F+EV+ + + + +A K E + + Sbjct: 356 LVESEYGYHIIQLNDVKTPKQPTFEEVRAKLETEAKQQQAQRKFAELAEVFSNTVYEQAD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V + +A + L +F D +K +T + Sbjct: 416 SLQPVADKLKLKVQTASDVTRTPRPGAQGPLA----NGRFLEALFSSDSVQNKRNTEAIE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + +I PA ++V T V++ + ++AE + V + + Sbjct: 472 TAPSTLVAGRIAAYTPASTPSFDQVKTRVRELFVAERSAELARKEGEAKVAAWKAAPASA 531 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 +G + S R + F+G + + + V ++ Sbjct: 532 TGLGAPVTVSRDKPEGQPRPVVDAALQVNADTLPTFAGTPLGAQGYAV-----IKVDRIV 586 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + + + LK ++ V Sbjct: 587 PRDPADPAVARQQQQQYAEAEAQAEAMAYYELLKDRFKVQ 626 >gi|145634178|ref|ZP_01789889.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittAA] gi|145268622|gb|EDK08615.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittAA] Length = 622 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 249/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + ++ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S E + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|84622593|ref|YP_449965.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366533|dbj|BAE67691.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 656 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 234/672 (34%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA F D KFS D + + LA+ ++ Sbjct: 120 LGAEDAGIVIGDASVRDYIANIQAFQ-VDGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L + A S+A + QW++ Sbjct: 179 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAM-DTAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE+ K ++ P+ R ++ Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K GD I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T+++ +++ + L + + + + +L Sbjct: 416 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 469 AFSETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALLLDKVRDKVTAAIRADRAEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + +L + G+ + + + + + R +FS P Sbjct: 529 AA-ADALLARVQRGETLQALAASEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|220905632|ref|YP_002480944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869931|gb|ACL50266.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 639 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 229/650 (35%), Gaps = 39/650 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR S++ K+ ++ + F+ WG+ + S + V V + F ++ Sbjct: 1 MLEYIRDKSQSLGVKLAFGLIILVFVFWGVGN-FNDRSSGTLVAVVNGDPISMREFELAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + + E+ + L ++IL +L++ L Q G+ + + Sbjct: 60 RNAEENLLRSNPG-LTREQLKQQQLGRQILRDLITQVLLSQEAARTGVSITPLELRMAVG 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F + +F +V+ LA + + ++ ++ L R + M Sbjct: 119 NIKGFQNEKGQFDPEVYTRVLAAQRMAPAQFEQDMSRDLLRQKIFAMVTAPAWVDPAESQ 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + F E R VDYI + A PS+ + ++E +K + P ++Y+L Sbjct: 179 KRFEFLREKRDVDYIFIPASDFAASVKPSDEEVQAYYESHKAQFAIPARADVAYVLVSPQ 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288 + K IS+ + Y N ++ E ++ P ++A EA Sbjct: 239 DLVKASGISSAAAEKWYADNAARFEQQEEVKAAHILVPLAEDASEADVKKAQEQAAAIEA 298 Query: 289 SLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK GK F +A+ + LG + D+ F+LA G + + Sbjct: 299 ELKAGKSFAAVADAHNGPNAAGPGGELGWLKRGTTVKP-FEDAAFALA-PGKVSAPVRSQ 356 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG I V K F++V+ ++ M + ++K+ + L E LG S+ + + Sbjct: 357 FGLHIIKVEEKKDGGLPPFKQVEAEVLAAMAQEQGADKLHDVVDNLIEDNILGRSLKDSA 416 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + + + L+ A + + Q + D + +Y+ Sbjct: 417 EKYGLKWGETGLLSAAELEKT------LGVTAQGAATLVATPAGNPVDTALEAGK-AYVV 469 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ +S PA LE V + K A L E G Sbjct: 470 ARVIKSEPASTASLEAVKERIVAGLVEEKALAAALESAAALRKELENA---PLGAAGLKG 526 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVF---SGPVEMVKCFPIEN--GLSYVVFKVTNSK 580 ++ T + R F +++ + + +E+ G VV +V + Sbjct: 527 RTVKTVKGMERNGALASFGPNPVMAEALFEARAGQWLPVAYAVEDGSGSGAVVVRVKGVQ 586 Query: 581 VGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTV-HDNLIQR 625 E D + + +D L + + L S V V +++ I R Sbjct: 587 PPDAAEWDMVKDIMANAVARDRADGLFEIFMQRLASGAKVEVYNEDFIDR 636 >gi|167581584|ref|ZP_02374458.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis TXDOH] Length = 644 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 95/646 (14%), Positives = 229/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ S+ V +V K+ + F Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGML 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQMLGAQFDAKAFDTPQRRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V ++L + P++A ++ +++ +K + E I Y+++ Sbjct: 180 VARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N +Y + V + + +A++ Sbjct: 240 SQAAAAAAAQPSDIDVKKYYDDNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KKG+ + Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK I ++ A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + + + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYTL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 VGNNTLIAARVTSYQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAADKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + ++ +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 631 >gi|71901123|ref|ZP_00683230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|71729128|gb|EAO31252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] Length = 655 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 116/671 (17%), Positives = 241/671 (35%), Gaps = 64/671 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R+ + W+A + +L +PFL + G V + Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGGGGKDDVAQLQASPTWWKSAPAFW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 RQ + F + + Q + G ++ ++ +K+LD L+ + Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQRRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158 E G+ V IA F K KF+ D + LA+E + Y ++ M Sbjct: 120 LVAEGAGVVISDEAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + + N L++ + R+ + + L + A+ S+ + +W+ Sbjct: 179 MQLSMIPSAIFDSGFVPNTELERILALLGQTRNAELVTLPALKL-DTAEISDVQIKEWYA 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 ++D++R PE Y+ D + S L+ Y+ + E R ++ Sbjct: 238 VHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296 Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323 +QK A+ L K G F LA ++ G + LG + + Sbjct: 297 VGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K G+ I FG + + IK + + F+ V+ +A + + Sbjct: 357 -FEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKA 414 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T + S + + L + +AA P +++LF Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFS 470 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 D + + + +++ + L++V V + + ++ +S Sbjct: 471 HDFIQGGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557 A+ LV K G ++ K + + R + + +FS Sbjct: 530 ADALVARLQK-GDTLEEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 V ++NG Y VF VT G P ++K+ L Q+ + + + ++ Sbjct: 586 PTVGKVRLDNG-RYAVFTVTQVIPGDLTKFPEEQKEMLRQQLDQIEGTLAVHAYVDMMRK 644 Query: 613 QYSVTVHDNLI 623 ++ VT+ + + Sbjct: 645 RFKVTIDKSQL 655 >gi|15603844|ref|NP_246918.1| hypothetical protein PM1979 [Pasteurella multocida subsp. multocida str. Pm70] gi|12722418|gb|AAK04063.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 626 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 124/640 (19%), Positives = 251/640 (39%), Gaps = 33/640 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + +WV+K L ++ V F++ G++ +F+ +S V + +++ +F Sbjct: 1 MLIEKLHGMTNSWVSKFLLGLIAVAFVLSGITGYVFTRVDTSAV-KINGEEISQQTFYQR 59 Query: 60 WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ E + Q++G + GL + +L+NL++ L Q+ +++ + RV Sbjct: 60 YESESERLRQQLGAQFAALSGSPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 EI S F ++ KF + ++ L G+ Y + + L + Sbjct: 120 QEIVTSQFFQ-QEGKFDNALYQRMLQLNGLTPDAYANIVREGLRLEQLQTGLAESEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 Q +F+ R+V + V S+ ++ ++E K + PE ++ Y+ Sbjct: 179 AQQAQLTELFFQARTVRLAPFSLDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQYMT 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + EK I++S+ E+ Y+ NK Y S + + + + EA E +Q+L+ G F Sbjct: 239 LTRADVEKHIQVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDGANF 298 Query: 297 IQLA---------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 LA E G LS S G+F K + ++ +L + G F+ + Sbjct: 299 AGLASARSLDKISAENGGDLSWASAGTFPK------AFEEAANAL-QVGQFSQPVKVDDQ 351 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + I V+ K T+ + VK IA+Q+R + + K+L E + + + Sbjct: 352 FHIILVTERKEPSTLPLEVVKTQIADQIRQNLVNNQYFSIEKQLAEKAFEHP--EGLEKA 409 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 ++ + + DF +V A ++ +F D + + + + Sbjct: 410 AEVAGLTIQETDFFS----ANDVPAALNYPNVISAIFHSDISQGGVNSEPMNVGEQHAVL 465 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + P R LEE D+ K K E V ++ANQ + + G G Sbjct: 466 VRVIANKPEGTRSLEEAKADIISYLKRQKAEEIVLAEANQAAQRLNDNASSTLPEGVQFG 525 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 ++ NR N ++ + + V Sbjct: 526 SAEKWVFAENRDAALNNVIFAMSLT---DNKPSYIASKASNGEVVLVELSHIEQGALSAA 582 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 E + F L Q L ++++ L+++ + V++ Q+ Sbjct: 583 ESELFTKQLAQARQVALQNTLLQALRAKAKIEVNEKFFQQ 622 >gi|325577782|ref|ZP_08148057.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae ATCC 33392] gi|325160527|gb|EGC72653.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae ATCC 33392] Length = 625 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 114/637 (17%), Positives = 238/637 (37%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + +++ K ++ V FLI G+S L+S S S V + + F+N Sbjct: 1 MLIEKMHGIAHSFIGKAIFALIPVSFLIGGMSGYLYS-SNDSFAAKVNGETISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE +Q+ G L + ++ LV + Q+ +++ L + Sbjct: 60 YNQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P + KF + + L++ G+ Y L+ + Sbjct: 120 RAIVSDPNLQS-NGKFDNVRYQQLLSQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L A ++ + +++ + PE ++ YI Sbjct: 179 AQVKDNAQVFFQKRIARLATLPLADEIAKQKVTDEEIKAYYDANAKSLVQPEQAKVQYIH 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 +E K ++ ++ Y++NK ++ S + + +KEAD +Q LKKG F Sbjct: 239 VSANELGKLQPVTETQIAQYYQENKAQFISQ---KLAHIQLSTEKEADSVYQELKKGADF 295 Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA+ + LG +P + D+ L G ++ ++ Y I Sbjct: 296 AELAKTKSLDKLSGAQGGELGWVKDNELPK-NFEDAAL-LLNVGQYSTPVNVDGAYHIIL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V + K + +EVK+ IA+ +R A + + K + E A S D ++ Sbjct: 354 VQDRKE---RTLEEVKEQIADTVRKNLAESRFQAVEKAVREKAAE--SSDSLAAVADAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ GK+ V A + +F D + + + + + ++ V++ + Sbjct: 409 VKVEETDYFGKN----NVPAALNFPNVTSAIFESDIANGGANSEPLTVGENEFVVVRVVD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L+E + +++ K K + ++ KA Q V S + G S Sbjct: 465 HKAEGLQSLDEAKSTIEQFLKREKADKVLAEKAEQAVKALSTDSTKL-----PAGISFSE 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588 MDN++ + + + VV + + QE Sbjct: 520 PQTFTLMDNKDPMLYEGVFAIAKPQDDKAAYQVARNSKGDVVVIALERVEEPTLSEQELA 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 KF + L + +L ++ L+ + + +++ I + Sbjct: 580 KFSTQLVRARQGELQGQLMQALREKAQIEINNTFINQ 616 >gi|167619701|ref|ZP_02388332.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis Bt4] gi|257138861|ref|ZP_05587123.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis E264] Length = 644 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 95/646 (14%), Positives = 229/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ S+ V +V K+ + F Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGML 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V ++L + P++A ++ +++ +K + E I Y+++ Sbjct: 180 VARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N +Y + V + + +A++ Sbjct: 240 SQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KKG+ + Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK I ++ A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + + + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYTL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 VGNNTLIAARVTSYQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAADKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + ++ +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 631 >gi|294627916|ref|ZP_06706495.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292597830|gb|EFF41988.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 656 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 107/672 (15%), Positives = 237/672 (35%), Gaps = 65/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R + W+A L +L +PFL + ++ G++ V V Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++Q Q+ G + S ++LD LV + Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158 ED G+ V IA P F D KFS D + + LA+ ++ + Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-VDGKFSPDQYRAALAQGTPPRTPAQFDALVSDS 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ +L A S+A + QW++ Sbjct: 179 LQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPA-ADAAPVSDAQIKQWYD 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R PE I Y+ + L+ YE K ++ PE R ++ Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297 Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 +A + K G F LA+ + LG K + Sbjct: 298 AGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++FS+ K G+ I FGY + + +K SF++V+ +A + A + Sbjct: 358 -FEDALFSM-KAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + + T+++ +++ + L + + + + +L Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRS-------DASGVAANPAVLRA 468 Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + + + +++ + L++V V + + + + Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAA 528 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A+ L+ K G+ + + + + + R +FS P Sbjct: 529 AAADALLARVQK-GETLQALADSEKLQVQPIPGLPRT---APIPTPAANRAIFSAPRPTE 584 Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 + +G + VF ++ + G P +++ L+Q+ + + + ++ Sbjct: 585 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 644 Query: 612 SQYSVTVHDNLI 623 +Y + + + + Sbjct: 645 KRYKIQIEEAQL 656 >gi|221215062|ref|ZP_03588029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD1] gi|221164998|gb|EED97477.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD1] Length = 644 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 237/659 (35%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + ++ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL + P++A L +++ +K + PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTGDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+AE+ + LG ++ + D+ F+L K+G+ + Sbjct: 300 LLADVKAHPDQFAQIAEKNSQDAPSATKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F EVK +IA ++ A++ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456 S+ + + K+ + + + + L VF D + + Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQL---PATSPLNNAKFLAAVFANDSVKAHNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + ++ +S V+ + + + + Y ++ Sbjct: 535 TEGFAAAQKISRTQSQGLS----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + QM + ++ +A L+ + V ++ + + + Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSQGND 643 >gi|161524527|ref|YP_001579539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|189350717|ref|YP_001946345.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans ATCC 17616] gi|160341956|gb|ABX15042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|189334739|dbj|BAG43809.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans ATCC 17616] Length = 644 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 236/659 (35%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + ++ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL + P++A L +++ +K + PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+AE+ + LG ++ + D+ F+L K+G+ + Sbjct: 300 LLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F EVK +IA ++ A++ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456 S+ + + K+ + + + + L VF D + + Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQL---PATSPLNNAKFLAAVFANDSVKAHNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + ++ +S V+ + + + + Y ++ Sbjct: 535 TEGFAAAQKISRTQSQGLS----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + Q + ++ +A L+ + V ++ + + + Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQTAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSQGND 643 >gi|241763692|ref|ZP_04761741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] gi|241367081|gb|EER61455.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] Length = 641 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 111/646 (17%), Positives = 235/646 (36%), Gaps = 47/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ V + +++ F++ G+ + FS SS V V + + + N+ Sbjct: 1 MFESIRKHSK-VVMLLLFLLIIPSFVLVGIDRSYFS-QKSSVVARVDGHDISQTDWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW---G 117 K E I + V+++ S L+ LV + + L R+ Sbjct: 59 KVETDRIRAQSP-TVDAKLLDSPQARYATLERLVRDRVFQAASQKMHLVTSDSRLARSLQ 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI D + + + + +G++ + + + + +S V+G +G ++ Sbjct: 118 EIPAIAALKRPDGSLDAEAYRALVGAQGMSPEGFEANVRRDISVNQVLGGVMGTAFGTDA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A ++ R V N PS+A L +++ + +++ E + Y++ Sbjct: 178 QVKLALDALYQRREVQVARFNPADFAGKVTPSDADLEAYYKAHTADFQQAEQATVEYVVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 D+ I ++ D+L+ Y++N + E R ++ K+A A + K Sbjct: 238 DLDSVRAGITLNEDDLRTYYKENLTRLAGKEERRASHILINASKDAPAADREKAKARATQ 297 Query: 294 ---------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F ++A+ + G + + L F + + D+ F++ KKGD + Sbjct: 298 LLEQVRKAPATFAEVAKKSSDDTGSAPAGGDLNFFGRGAMVKP-FEDAAFAM-KKGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FGY I +++IK +F+E++ + +++ +A K E + + Sbjct: 356 VVETDFGYHIIMLTDIKTPRQPNFEELRPSMEAELKQQQAQRKFAEVAESFANGVYEQSD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ + K+ V + +A +LL +F + +K +T A+ Sbjct: 416 SLKPVAEKLKLKVQTATGVTRSPAPGATGPLA----NGKLLEALFSAESLENKRNTEAVE 471 Query: 460 DG--SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G ++ AR L+EV V+ + K+AE + Sbjct: 472 VGPSQMAAARVTAYTAARTLPLDEVRARVRTLYVAEKSAELARKEGE----------AKL 521 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 G + ++ + + V + + + Y V K Sbjct: 522 AAWKSAAGNPAGLQAAVVVSRDQPQNQPRPLVDAVLGASTAALPAWVGVDLGAQGYAVAK 581 Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 VT Q + Q + + LK ++ V + Sbjct: 582 VTRIVPRDAPNEQVARQERQQYLQWWSNAEGLAYYELLKERFKVQI 627 >gi|268592032|ref|ZP_06126253.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM 1131] gi|291312424|gb|EFE52877.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM 1131] Length = 651 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 109/628 (17%), Positives = 248/628 (39%), Gaps = 19/628 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R + + + KI L ++ + F++ G+ + ++ V Q + ++ Sbjct: 29 MMENLRTKANSPLLKIILALIILSFVLGGVMMGGLGGNSANNAAEVNGQSISREQLQQAF 88 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE + + +G + S L ++ LDNL++ ++Q+ ++ L A ++ Sbjct: 89 QQERQSLQEYLGDKFSEVASNEESMNLLRRQALDNLINNELINQYANELQLSASDQQIEQ 148 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P+F D +F + + L+R IN + L+R + F G Sbjct: 149 YIFSMPVFQ-TDGRFDSEKYREILSRNNINADSLAAQIRQDLTRAQLGKTFTGTDFALPS 207 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R + +L+ V A S L +++ ++++ +PE ++SY+ Sbjct: 208 EVKAYAELFMQEREIRTAILDLAEVQAKQTASEEELKAYYDANQNSFISPEKVQVSYVEM 267 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D +S +E++A Y++N + Y E + + ++KEA++ LK+G F Sbjct: 268 DAASMP-PATVSAEEVKAYYDQNLKNYTQAEQKQYSMIQVASEKEANDILNELKQGADFA 326 Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA E+ S G L +KG + + YVI + +I Sbjct: 327 TLATEKSTDKFSAGQKGLIGWMEAASTPSEIVAAKLTEKGQLSAPVKSQNSYVIFRLDDI 386 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP F++V++ I + K ++ + +++ E A + M+ + E + + Sbjct: 387 KPESIKPFEQVEESIKTSLLQDKNIKQFYDLQQKVSE--AATSDMESLVSVESVSGLKAV 444 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPA 474 D+ + + ++ R+ K+ + V +G V++ E P Sbjct: 445 TTDWFDRTNPPAALNFPKVVSEVFSDRLVDKNGSKGINSDVINVEGDRAFVVRVTEYKPE 504 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++V ++++ K K E+ + +++L+ E GK + G T + Sbjct: 505 SVEPFDKVKSEIETLVKRQKADAELKATSDKLLAEL-NAGKGTEAL-NAAGVKFSDTQTV 562 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPV--QEKDKF 590 +R+ + P + + + +YV+ ++ +G E + Sbjct: 563 SRLMPQTAVINATMEMP---QPADGKPSYALARDESDNYVLIQLDKVTLGQPTDDELKQL 619 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 M+ + ++++ L+ + V Sbjct: 620 TREYQGAMSSAVNEALMLNLRENAKIEV 647 >gi|310815590|ref|YP_003963554.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium vulgare Y25] gi|308754325|gb|ADO42254.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium vulgare Y25] Length = 612 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 122/625 (19%), Positives = 252/625 (40%), Gaps = 31/625 (4%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K + +++ +I G L V VG + V + + +Q L Sbjct: 4 KKRTSPFVWAGFILIAGGLMITG---GLGLSGTVRNVGKVGDKTVTALEYQGAMQQGLQQ 60 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + Q G + + + +G + + LV L+ IGL V +I + F Sbjct: 61 MRQMFGNTLTFAQFQQMGGEAMAREQLVQERALENEASRIGLSVGDLYVARQIQQISAFQ 120 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 G FS + + + L + G+ E+++ D ++ + G + + + RF Sbjct: 121 GLTGGFSLETYRAALRQVGLAERQFEDAQRDAIASGLLSSAIAGDLTMPAIYAETLARFR 180 Query: 187 FENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E R + + + +V I P+ L + + + D + PE +R++Y + Sbjct: 181 GERRVITWAAVTAANVTTDIPAPTEEDLQAYHDSHPDVFTTPETRRVTYAALTPEMAAET 240 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG 304 IE+S DE++A Y++ + Y PE R V++L F N +A A ++ G+ F LA E G Sbjct: 241 IEVSEDEIRALYDQRIDSYIVPERRIVDRLTFNNDADATAALARIQSGEITFTDLANEMG 300 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 SL +I G ++ + + ++F+ A GD + FG V+ V+ + + Sbjct: 301 FSLEEIDQGEMTEAALGEGGA--AVFAAA-TGDTVGPVPSRFGPVLYRVNVDLAAEETPY 357 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 V+ + N++ ++A + ++ L + +A G +++I + S L ++ Sbjct: 358 DAVRDTLRNELAASRAGRVIAQEKASLTDLVAGGAQIEDIVNLSDLRSGTLD-----WQE 412 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 + +AA + P V LPDG +++ E +P R + L+E+ Sbjct: 413 GNTEGMAAYEPFRAAIAAAEIGAFP----AIVDLPDGGIFVLRLDEIVPPRVQTLDEMRA 468 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 + W+ T + V+++A +L E + G F LG + T + R D Sbjct: 469 YAEVMWRFQATQDAVATEAARL-AEAVEGGATFE----ELGLTATTEPALTRSDVVAGT- 522 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMM 598 Y ++ F+ V + + V+ ++ + ++D L + Sbjct: 523 PYGTMTTAFTLDSGDVTTLSDQG--TVVILRLDSIATADESNATYTADRDALAQTLNNSL 580 Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623 D++ + +++ SV+ ++ + Sbjct: 581 AGDVMQAYGGAVRATTSVSFNETAV 605 >gi|145638176|ref|ZP_01793786.1| lipoprotein signal peptidase [Haemophilus influenzae PittII] gi|145272505|gb|EDK12412.1| lipoprotein signal peptidase [Haemophilus influenzae PittII] gi|309751332|gb|ADO81316.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R2866] Length = 622 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 248/637 (38%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKMAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + + + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|170720931|ref|YP_001748619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida W619] gi|169758934|gb|ACA72250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida W619] Length = 623 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 105/639 (16%), Positives = 223/639 (34%), Gaps = 40/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ V + G + S S V Q + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAASHSQDAAKVNGQTISQNELSQAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L L L+ L Q +D + I Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKLLRDAALKGLIERKLLLQGAKDAKFAFSEAALDQVIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + G ++ + + + V G ++ +D Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMGYGRLQFREMLAEEMLIGQVRTGIAGSSFVTDQQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + PA S+ + +E++ + P+ I Y+ Sbjct: 180 AFARLENQTR--DFASLTFKANPAAVKVSDDEVKAHYEQHAKEFMTPDQVVIDYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++++DEL+A+YEK E R ++ + +E Q L Sbjct: 238 AFFDQVKVTDDELKAQYEKEIANL--AEQRHAAHILIEVNDKVTDAQAKARIEEVEQRLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F +LA+E + + G F+ + D D+++ L G + + FGY Sbjct: 296 KGEDFAKLAKEFSQDPGSANSGGDLGFAGPGVYDPVFEDALYKL-DDGQVSAPVRTQFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + + SF +K + ++ ++ + K+L++ + + ++ Sbjct: 355 HLIKLLGKQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEAADLAQPAQDL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + G + I ++ F ++ + + + L + + + Sbjct: 415 NLKVHTSAPFGREGGE-------GITANRAVVQAAFSEEVLEEAANSTAIELDPETTVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE LE V + + K E+ +K ++L+ + G Sbjct: 468 RVKEHRKPEQMPLEAVAKSISEHLAKEKATAELKAKTDKLIAGLRDG--SVAAGTAQEGQ 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI------ENGLSYV--VFKVTN 578 S + R + +F K P+ +G V + V Sbjct: 526 SWKAYEAVTRN---QDGIDPAELQALFRLAKPQAKDKPVYGSVVLADGSLVVLQLKGVNE 582 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + YL + + L+ +T Sbjct: 583 GAAASDEEKQQIRRYLASRAGQQDFAAYRKQLEGSADIT 621 >gi|304311294|ref|YP_003810892.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1] gi|301797027|emb|CBL45240.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1] Length = 641 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 116/646 (17%), Positives = 246/646 (38%), Gaps = 34/646 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ R WV K LV++ VPF+I G+ +F+ + V ++ + + + Sbjct: 1 MDAFRSMLTGWVGKSLLVLISVPFVIVGIEG-IFTSGRDRAALVVDDHEISNAEIQQAVE 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I +++G V+ + + + L+ L F + G + Sbjct: 60 NRRTQILEQLGKGVDPSFITAEMVRPAVEQELIKRQLLIGFADKDGFSVPEEAAKSYVRA 119 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F +FS + S L+R GI K +++ + L + G G + +++ Sbjct: 120 VPQFQTPAGEFSQPLLNSYLSRAGITAKGLLNNVSTSLLTEQIQGGLGGSAFATPADVER 179 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + R + + A +PS+ LT+++E ++D+Y++ E ++SY+ + Sbjct: 180 ILSLDKQVRDIGVAYIKPEEFRAGINPSDFDLTEYYEAHQDDYQSEERVKVSYVHLSQEQ 239 Query: 242 KEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291 E IS+ E+Q + ++ + E R E ++F + A++A LK Sbjct: 240 FAANDEPISDAEIQDKLDEMIKDAEGNERRHAEHILFETGSKHSDAEARSLAEKALAELK 299 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 GK F +LA+ Q + G ++ + D++F+L D + V+ FGY Sbjct: 300 AGKNFEELAKAQSEDFESAKNGGDLGYAGRGVYAPEFEDALFALQAPNDISGVVKTEFGY 359 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + + Q+ + I ++R + + + ++ + EIS + Sbjct: 360 HIIKLIGVDEPPLPDMQKSRDHIIAEIRKERIASNIGTIIDDIDRMAFESNDLSEISAQY 419 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 P V G + A P + F + + D + L DGS + +++ Sbjct: 420 DQK----PEVSDWLTRKGGTGIFADPKVVEAAFSSEILQEQRNSD-VIELEDGSLVVLRM 474 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + P R+ L+EV V++ K E + +A +L+ G++ + + Sbjct: 475 DQHEPVRELSLDEVKDKVREQVIASKAQELATEQAKELLGRL-NAGEDRVAVLASAKLFW 533 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTNS---- 579 + + R + + F P + P+ +G + V+N Sbjct: 534 QDSPALARNAT---MPPQAVVQKAFELPKPAAGKYSNTTLPLASG-EIALISVSNVVSGD 589 Query: 580 -KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 K E+ F + L ++ ++ L+S+ + + N + Sbjct: 590 GKAKSEAEQRAFQNGLAMRYGSMDMEGFLSTLESKAVIKRNQNEAE 635 >gi|317154730|ref|YP_004122778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio aespoeensis Aspo-2] gi|316944981|gb|ADU64032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio aespoeensis Aspo-2] Length = 632 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 113/640 (17%), Positives = 240/640 (37%), Gaps = 37/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLEI+R+ + W+ KI ++ V F+ +G+S + +V Q + + F ++ Sbjct: 1 MLEIMRENASGWIVKILFGIIIVVFVFAFGMSG--LETGQDPILATVNDQIITRAEFEDA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ + V + + + +L L++ L +G+ A V+ I Sbjct: 59 FQRAAEGVRT-ANPDVTPAQLQDPQFKQMVLGELINSRLLLHEAARLGISASDEEVFAAI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 R F + F D++++ L + + ++ + V M + Sbjct: 118 TRQSYFWNQAGAFDRDIYMAALRSIRMTPALFEANFKNEMIAGKVQDMVRKTGVATPEQA 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Q + E VDYI+ + + +++ +D + PE RI Y+ F Sbjct: 178 RQIFDWVGEEVRVDYILSSPAAFAPQVRVDAKEVDEFYASNQDKFMVPEQVRIRYLAFTP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLK------- 291 + + E+S+ E+ A + N E L+ + ++DE + Sbjct: 238 KDLAARQEVSDPEIDAYFAANSASMKQEEQVKASHLLIMTSDSDSDEEQAEARKKIDAAY 297 Query: 292 ----KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 G F LA + + LG F + + + FS KG + + Sbjct: 298 AKAKAGGDFATLARQNSEGPSAAGGGDLGWFGRGDMV-PEFEQAAFS-TPKGQVSEPVRT 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ I +V + K + ++ EV+KDIA + KA+E+V + + + L G ++D + Sbjct: 356 QFGWHIIYVEDRKEARELALDEVRKDIAIAIAEEKAAERVTDLLDQAMDRLVSGMTLDAV 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSY 463 + ++++ + G + D ++ H L +G Y Sbjct: 416 ADELGMLAVTSSPLPEQGLVQN--------FGLTPEAATVVMDIQKNESHKTPLSINGGY 467 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 M V+ E IPA ++EV ++ K A ++A +++ + + G + + Sbjct: 468 MLVEKVEDIPAAPLPIDEVRDAIEGAITQQKAAALAMTEAQEILAQLT--GPDSAEAAAR 525 Query: 524 LGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 A + T+ +R N F + P +V +++ Sbjct: 526 YAARIKTSEPFDRQGNVPALGQSQALAEAAFGSAGKEWLPQPFAMQQGIIVARLSEVIPA 585 Query: 583 P----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 ++KD +I +Q ++L++ + L+ Q + + Sbjct: 586 SEETWAEQKDAWIDQASQNYQLEVLNAYMTGLRQQADIEI 625 >gi|68249587|ref|YP_248699.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 86-028NP] gi|68057786|gb|AAX88039.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 86-028NP] Length = 622 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 114/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLEDEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S E + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQFQLIQGLRERAKIEVNDSFINQ 616 >gi|170702053|ref|ZP_02892969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria IOP40-10] gi|170133039|gb|EDT01451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria IOP40-10] Length = 644 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 103/647 (15%), Positives = 240/647 (37%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 PAQRLSELAAQQREVQALVLKTGDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + S V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKDSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F +VK IA Q++ A++ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSVVKPFADVKDHIAVQLKQQYAAKAFTDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ ++ + P + L VF D S+++T + Sbjct: 419 KTLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + E + E K Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKEAVRQKVVAEQATELAKKDGAAKLAELQK---- 531 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 +++RM +++ +S V+ + + + + Y ++ Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V G Q+ + Q+ + ++ +A L+ + V + Sbjct: 585 RVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 631 >gi|226197150|ref|ZP_03792727.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pakistan 9] gi|225930529|gb|EEH26539.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pakistan 9] Length = 644 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 99/646 (15%), Positives = 230/646 (35%), Gaps = 43/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL I G+ S+ V +V K+ + F + Sbjct: 1 MLDFFRNHQRLMMFFLLLIVL-PGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD L+ L + + L A G V + Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D F + + LA +G+ +Y + L+ + V Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V +VL + A P++A ++ +++ +K + E I Y+++ Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + S+ +++ Y+ N Y + V + + +A++ Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +K F Q+AE+ + LG ++ + D KK + + Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ G FG+ I +++KP+ EVK IA +R A++ ++ + + Sbjct: 360 VVQGDFGFHILKATDVKPAVVKRLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ + + + + + L VF D + ++T + Sbjct: 420 SLQPAADKYKL---TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAID 476 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + + + ++ P+ L+ + V+ + A + E K K+ Sbjct: 477 IGNNTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKS-KST 535 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 S + +S ++ + + + + Y +F+ Sbjct: 536 AGFAAPDKIS----------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFR 585 Query: 576 VTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + L Q+ + + +A L+++ V + Sbjct: 586 VNSVVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631 >gi|330817266|ref|YP_004360971.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3] gi|327369659|gb|AEA61015.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3] Length = 646 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 100/648 (15%), Positives = 238/648 (36%), Gaps = 46/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL G+ S+ V SV K+ + F ++ Sbjct: 1 MLDFFRNHQRLMMFLLLLIVLPGL-GFVGVQGFRDFFDDSANVASVDGHKITRAEFDGAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G ++++ + +++LD ++ L + + L A V + Sbjct: 60 RQQIDQARQALGANFDAKQFDTPERRQQLLDGIIEQRALTDEVRRLHLTASDNAVREALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +P+ D + + LA +G+ +Y + LS++ + + Sbjct: 120 SNPIIASLRKPDGSIDAERYTQLLAMQGMTPDQYQESVRYQLSQSQLPNNLINSAFTPRS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R + +VL A P++A L+ +++ +K + PE I Y++F Sbjct: 180 VAQRLTDLAQQQREIQAMVLKPADYAAKVQPTDAQLSAYYDAHKQAFATPETASIQYLVF 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285 + S+ +L YE N ++ + V + + +A++ Sbjct: 240 TPAAAAANAQPSDADLHKFYEDNTARFRTEAQVRVSHIFIAAARNASASDKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 + F Q+AE+ + LG ++ + D+ F+L K G+ + Sbjct: 300 LLAEVTAHPDQFAQIAEKNSQDAPSAAKGGDLGYVTRGSTAGGPAFDDAAFAL-KPGELS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ GY I +++KP+ F EVK IA +++ A++ ++ + + Sbjct: 359 KVVESDLGYHILKATDVKPAVVKPFDEVKDSIATELKQQFAAKAFSDNSEGFSSLVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + P + L VF D + ++T + Sbjct: 419 KSLQPAADKYKLTIQTATVTPQPNPALPPDSPLNNP---KFLAAVFAADSVKNGNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ PA L+ + V++ + ++A+ + K Sbjct: 476 DVGNSTLIAARVTADKPAAVPALDAIKDVVRQKYIADESAKLAKQDGAAKLAALQKSKST 535 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVV 573 L +++R + I+ ++ + + + + Y + Sbjct: 536 ---------DGFLPAEKVSRTQTLG--LSPEAIAAIYKADAKSLPAYVGVDLGANGGYAI 584 Query: 574 FKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 F+V Q+ L Q+ + ++ + L+ + V + Sbjct: 585 FRVNAIVPPAPVDPQQLTAAQQQLAQVYAQSESEAYMKALRDRSKVKI 632 >gi|254511419|ref|ZP_05123486.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] gi|221535130|gb|EEE38118.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11] Length = 613 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 120/604 (19%), Positives = 252/604 (41%), Gaps = 26/604 (4%) Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 +G + +V TV VG + V ++ ++E+ + + G + +A +GL Sbjct: 25 AGFGATSLTGTV---RTVAQVGDESVSVDAYFRELQREIRAVEAQTGQAMQIAQAHDLGL 81 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 D+ L L++ A LD + +G+ + EI + P F G + F + + +L + G Sbjct: 82 DQLALSRLIALAALDNEVAQLGISIGDENLQNEIVQIPAFQGVNGTFDREAYRFQLEQVG 141 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 + + E+ K +RT V G +GG+ L + + RS L+ + Sbjct: 142 MTDAEFESDLRKESARTIVQGAVIGGVEMPLALTEALANYVLARRSFTLATLSAEALETP 201 Query: 206 A-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 P++A + ++++ D + P KR++Y + +EI D L+ Y++ +Y Sbjct: 202 VPQPTDAQIQAFYDENTDRFTLPRTKRLTYAILSPEMLLDAVEIDEDALRRLYDQRAGQY 261 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 PE R VE+L +P+++ A EA L+ G F QL ++ LSD+ LG ++E + D Sbjct: 262 LQPERRLVERLPYPSEEAATEALAQLEVGGADFEQLVRDRQLELSDVDLGDVTREDLGDA 321 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 AD++F+ D + FG + ++ VSF+E + ++ ++ +A Sbjct: 322 --ADTVFAAG-IDDVVGPLPTVFGPALFRINGTLAENNVSFEEARPELREELAADRARRL 378 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 ++ + + + LA G ++++++ ++ + +G VAA V Sbjct: 379 IEAQAEDINDMLAGGATLEDLAADTEMELGTIDWTQQSGDG-----VAAYDGFRAAAVAV 433 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 D P L DGS +++ + + R L+ V + W V+TA + ++A Sbjct: 434 QEGDFP----EIGFLEDGSIFALRLNQVLEPRPEPLDSARARVAEAWMQVETARALQNQA 489 Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 + ++ + + +G G N + R + D ++QVF ++ Sbjct: 490 DAILTQLATDGDF-----TATGLPFRVENALTRTAFLDDV-PVDFMAQVFELEPGELRVI 543 Query: 564 PIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 P V +++ D + + Q + +++ D + +++ + Sbjct: 544 PGNGNALIVRLDEELPPAETDEQRQMQDALAAQMNQALAQNIFDIYVRNAQTRARPVLDQ 603 Query: 621 NLIQ 624 + Sbjct: 604 QALN 607 >gi|171322244|ref|ZP_02911086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MEX-5] gi|171092428|gb|EDT37778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MEX-5] Length = 644 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 239/647 (36%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V ++ K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAINGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 NDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V +VL A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 PAQRLSELAAQQREVQALVLTTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + S V + + +A++ Sbjct: 240 SPAAAGASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F +VK IA Q++ A+ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSLVKPFADVKDQIAVQLKQQYAATAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ ++ + P + L VF D S+++T + Sbjct: 419 KTLQPAADKYKLAIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQAAELAKKDGAAKLAELQK---- 531 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 +++RM +++ +S V+ + + + + Y ++ Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V G Q+ + Q+ + ++ + L+ + V + Sbjct: 585 RVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLTALRDRSKVKL 631 >gi|304413823|ref|ZP_07395240.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus Regiella insecticola LSR1] gi|304283543|gb|EFL91938.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus Regiella insecticola LSR1] Length = 623 Score = 356 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 112/628 (17%), Positives = 271/628 (43%), Gaps = 21/628 (3%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E +R A+ + KI +V++ + F++ G+S L + V +K+ + +++ Sbjct: 1 MEKLRAATNSVALKIIIVLIILSFILTGVSGYLVGGAN-DYAAKVNGEKISQAKLEQAFQ 59 Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E + Q++G + S + L ++ L+ L++ L+Q+ + +GL +V Sbjct: 60 SERARMQQQLGEQFSTLASNESYMSKLRQQTLEQLINNVLLNQYTQKLGLTVSDEQVKES 119 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + P F DNKF + +++ + G ++ + L ++ + Sbjct: 120 IRQIPYFQ-TDNKFDNTKYLNLINSMGYKPDQFAQLQLQQLILQQLLQAVGSSEFILPME 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + + R V ++ + A +N L ++ + K ++ AP +ISYI D Sbjct: 179 MKKTAELVLQQRDVRLATIDVNALQAHQKVTNTELKNYYHQNKKDFIAPAEIKISYIFMD 238 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + E +KKI +S E+++ Y+++K Y PE + + +KEA LK G F Sbjct: 239 MAEIQKKITVSEKEIESYYQQHKNNYIQPERKHFSVIQLKTEKEAQAILAELKTGADFAT 298 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+++ + + +LG D +L +KG + VI S GY+I ++ Sbjct: 299 LAKQKSVDIISRKNGGTLGWLEASMTLD---ELKQANLTEKGQLSDVIKSSVGYLIVRLN 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +IKP + +F+EV+ ++ +++ K + +++ A + D ++ E + Sbjct: 356 DIKPEQSRAFKEVRTELLKKVQQEKTLDAYYALQQQVS--TAAANNNDSLASAEVAADLQ 413 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGS-YMWVQIKESI 472 ++ + E+ P + + + G D S + V +G +++ Sbjct: 414 AKKTNWFTRRTVPAELNFKPVIQAIFEGSLIGADGASSGNSDVINVEGDKAFVIRVDGYT 473 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P + + ++ +++++ K K ++ +++ +E K+ + I K G + Sbjct: 474 PEKPQSFDQASSEIRELIKRQKAENAARTQGEKILAALRQE-KDIQ-IMKKEGLNFGKKE 531 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--F 590 ++R + ++ + + V ++ ++V+ ++ G + + ++ F Sbjct: 532 TLSR-SSYDEMLIKTIFALAHPQKNKPVYGLSQDSKGNFVLIELLTVTAGKLSQDEEASF 590 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 I+ + + + ++++A L Q ++ + Sbjct: 591 INKMQEASSGMNFEALMANLHQQATIKI 618 >gi|260581919|ref|ZP_05849715.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae NT127] gi|260095112|gb|EEW79004.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae NT127] Length = 622 Score = 356 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 247/637 (38%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKE 470 + + + + + V A +++ +F D + + D + V++ + Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSETPESTVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S E + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQLQLIQELRERAKIEVNDSFINQ 616 >gi|145637308|ref|ZP_01792969.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH] gi|145269560|gb|EDK09502.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH] Length = 622 Score = 356 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIINLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + ++D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEINDSFINQ 616 >gi|220934121|ref|YP_002513020.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. HL-EbGR7] gi|219995431|gb|ACL72033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. HL-EbGR7] Length = 633 Score = 356 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 114/642 (17%), Positives = 256/642 (39%), Gaps = 38/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + W+A + ++++ +PF +WGL++ F + + V V ++P ++ + Sbjct: 1 MLQKIRDKATGWIAYVIVILISIPFALWGLNEY-FGGAPAQVVAEVNGVEIPARAYQQEF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+ ++Q G + S + + L L+ + Q ED G V EI Sbjct: 60 QQQRQQLAQMFGGRIPSGAVDENMMRENALQTLIRRELVAQMAEDKGFRISASAVASEIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D F + + + + + E+ + + + +++ Sbjct: 120 AVPGFQR-DGVFDPERYRQIMESQRRSPAEFEARVAQAMLLEQFQSGYQRSAFLPEAMVE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R E R V S + ++ ++ + ++ PE R++Y+L D Sbjct: 179 DFVRLRHERRQVSVHRFPAEAYAERVQVSEDDIAAFYAEHGEQFQTPERLRLAYLLLDDA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288 +++ ++ D+L+ EYE+ +++ PE R ++ + AD A Sbjct: 239 TLAEQVSVTEDDLRREYEQRSDRFTQPEERRASHILIRVEPGADADTVAAAEARAREARA 298 Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 ++ G+ F ++A + LG ++ I D +L +F++ + GD + + Sbjct: 299 RIEAGEDFAEVARAVSDDPMAETAGGDLGYIARGDI-DPTLEGVLFTM-RVGDVSQPVRT 356 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDE 403 G I +++I+ + F+ V+ ++ + R + E +R L E +++ Sbjct: 357 GLGLQIVRLTDIEAARREPFEAVRDEVEAEFRSRRVEGLHIELTERLLTESFEQPGTLEP 416 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT-VALPDGS 462 + + + D+ + + +A+ P ++L F ++ ++ + LPDG Sbjct: 417 AAEA---TGLSIAFTDWFTRQGADEGIASEP---EVLRVAFSQEVRQGRNSDLIDLPDGR 470 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ E PA R LEEV +++ ++ + + LE + G + + Sbjct: 471 VVVVRLHEYEPAAPRPLEEVAEEIRLQLVWEESRRLAEADGAR-ALEALQAGSGWAQSLE 529 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTN 578 L T ++R E S+VF+ P + F + YV+ + Sbjct: 530 GLPGESTTELWVSRDSGE---LPGAVTSRVFTLNRPADDRPVFSGLSLRDGDYVLVALYA 586 Query: 579 SKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 S+ G V ++ L + +++ L++Q + + Sbjct: 587 SEPGEVRPARMNEARQQLANLYGGLEFEALYQALEAQAKIRI 628 >gi|89901031|ref|YP_523502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] gi|89345768|gb|ABD69971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] Length = 640 Score = 356 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 108/646 (16%), Positives = 230/646 (35%), Gaps = 47/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +RK ++ +A + +++ F+++G+ S S V VG + + Sbjct: 1 MFDFVRKHTKIMMA-VMFLLIIPSFVLFGIDGYNRSRDAGSVVARVGSHDITQGEWDAVH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K E + + ++++ S L+ LV L Q + L R+ + Sbjct: 60 KSEADRLRASMP-NLDAKLLDSPQARYATLERLVRDRVLAQAADKFKLTTSDARLARNLH 118 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +P D K D + + +G+ + + + LS V + Sbjct: 119 ENPSIAALRQPDGKLDMDRYRQLVGSQGLTPEGFEARVRQDLSVRQVEAGVGETGFAAAS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + D A +FE R V + P++A L +++ + +++PE+ I Y++ Sbjct: 179 VADVALNAFFEKREVQIASFTAADFASKVSPTDAELNAFYKANQALFQSPEHASIEYVVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 D+ +K I IS ++++ YE+N E+ E R ++ K+A A + K Sbjct: 239 DMDSVKKSIVISEADMKSYYEQNAERLSGKEERRASHILITAAKDAPAADRQKAKARADE 298 Query: 294 ---------KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F +A++ G + + L F++ + D++F++ KKGD + Sbjct: 299 LLKTVRQSPDSFADVAKKNSQDTGSAANGGDLDFFTRGAMVKP-FEDAVFAM-KKGDISE 356 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FGY I +++IK SF+E++ I ++ +A + E + + Sbjct: 357 VVESDFGYHIIKLTDIKKPVQRSFEELRAGIEADLKTQQAQARFAETAEAFTNGVYEQSD 416 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV--A 457 S+ ++ + K+ V + L +F D K +T Sbjct: 417 SLKPVADKLKLEIKTATNVLR----QPAAGTTGALSNAKFLAAIFNTDSIEKKRNTEAME 472 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 ++ + PAR +V V + K AE + + +L + Sbjct: 473 TAPNQLTAGRVTQYTPARTLPFADVSRVVHERVVADKAAELAKKEGQEKLLAW------- 525 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 K A+ + I ++ + ++ + F + Y V + Sbjct: 526 ----KASPAAAVMPAPIVVSRDQAQNVPPQVLTAALRADTAALPAFVGVDLGAKGYSVVR 581 Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V + + + Q + + LK ++ + Sbjct: 582 VNKIVPRQAPAEAAAKQDRAQYAQWWSGAETQAYSDLLKERFKAQI 627 >gi|145640678|ref|ZP_01796261.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021] gi|145274604|gb|EDK14467.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 22.4-21] Length = 622 Score = 356 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKSFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQIQLIQGLRERAKIEVNDSFINQ 616 >gi|309973498|gb|ADO96699.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R2846] Length = 622 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 249/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + + + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLHTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|226941261|ref|YP_002796335.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis HLHK9] gi|226716188|gb|ACO75326.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis HLHK9] Length = 607 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 124/642 (19%), Positives = 244/642 (38%), Gaps = 61/642 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E ++K T V KI L + + F+ +G+ + + + + VG +K+ + Sbjct: 1 MFEFVQK--NTLVIKIILGAVALTFVGFGVGSYT-AATDDAYLAKVGGEKIYKQDIERAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 G +S + +++L++L+ L G+ + IA Sbjct: 58 N----------GQPADSA------VRQQVLESLIRQKLLLADAGQHGMRVTDAELRRVIA 101 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + F + L + ++ +++ L + FV S ++ Sbjct: 102 GIPAFQD-NGHFDSKRYEEYLQSQYMSAEQFQARIRDELMVQQQLSAFVDATFVSPGAVE 160 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + E R ++ L +A + ++++ K ++ PE R+ Y+L + Sbjct: 161 RVHKLLAEQRQINQYRLTAAQFLPGVKVDDADVQRFYDSNKARFQTPEKVRLEYVLLSLE 220 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-FQSLK-------- 291 E K +++S +++ YE++K + E R V ++ K A A LK Sbjct: 221 ELAKTVQVSEADVRKYYEEHKAELAGDEQRQVAHILIAVPKGASAADKARLKTEAEAIVK 280 Query: 292 ----KGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +F LA+E+ G + LG F + + DS F LAK G + + Sbjct: 281 EVRSNPARFAALAQEKSADPGSAAKGGDLGWFGRGVMVKP-FEDSAFKLAK-GQVSDPVE 338 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMD 402 FGY I V IK T ++ DI ++ KA ++ + L + S+ Sbjct: 339 TEFGYHIIKVEGIK---TPDLSTMQADIHARLARQKAGALYRQQLETLGDVSYQQSDSLK 395 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 +S K+ + ++ K G + A P ++ F + L + Sbjct: 396 PVSEALKLP---VQQTEWIVKGQPGSGIVANPKVDEAAFSDDVF-KGKHNSEVIDLGNER 451 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V++ + PA+ + L EV ++K+ K A E++ KA + +L K GK Sbjct: 452 SVVVRVAAAEPAKLQPLAEVAPVIRKEL-ADKAARELAVKAGEKLLAELKAGKTPD---- 506 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTN--- 578 + Q++R D G D VFS V + + G + + ++ Sbjct: 507 ---VAWSAAQQVSRRD--PASLGRDVQRAVFSASVSKLPAYAGAAEGDGFTLVRIDRLLP 561 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + E+ + + L Q+ + S + L++ Y VT+ Sbjct: 562 AGALTGAERQQLVGMLAQLQTAADVTSYLNGLRAAYPVTLKQ 603 >gi|167855404|ref|ZP_02478170.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755] gi|167853470|gb|EDS24718.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755] Length = 624 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 106/642 (16%), Positives = 231/642 (35%), Gaps = 38/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + S WV KI ++ + F++ G+ L + S V V +++ F + Sbjct: 1 MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLMATDNS--VAKVNGEEISQQVFSRAK 58 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 Q+ +++ ++G + IL+ LV L Q+ + + ++ ++ Sbjct: 59 NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI SP F +D KF+++++ L G+ Y + + + V Sbjct: 119 EIVNSPAFQ-QDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V + S + ++E K N+ PE + YI Sbjct: 178 QQELLAKLLLQKRQVRLATYSIAKEVNNQTASTEEMQAYYEANKANFVNPEKLTVEYISI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + KI+++N+++ Y+ NK KY + + + + EA+E Q+L KG+ F Sbjct: 238 EPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDFA 297 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 QLA+ + + LG +K + + D+ ++ G + I + I V Sbjct: 298 QLAKAKSQDKLSAAQGGDLGW-AKAGVFPKAFEDAA-NMLDAGKTSQPIKVDNAFHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412 V ++VK I + +R + + + S++ +++ ++ Sbjct: 356 LERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAFENSGSLEAVAKVANVLV 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-----DGSYMWVQ 467 + V A E++L +F + + ++ A+ + M+V+ Sbjct: 416 HKTDAFTR-------ETVPAELDNEKVLRVLFDSEVRQNGQNSEAIDLSDATNTKTMFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + +E + V++ K K + + KA V +K G + Sbjct: 469 VSHYQAENVQTFDEAKSAVEQAVKQQKALKVLEEKATTQVAALNKGETVEVAFGASEELV 528 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK---CFPIENGLSYVVFKVTNSKVGPV 584 + + VFS K VV + G Sbjct: 529 F----------AQAQITEPALAQAVFSMAKPAEKPTYQTARNTNGDVVVIALDKVSDGTA 578 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 E + Q L + ++ L+ + + V+ + + + Sbjct: 579 DEFKPLQAQFNQAERVVLRNDLLKDLRERAKIEVNQDFLDQL 620 >gi|145630100|ref|ZP_01785882.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021] gi|144984381|gb|EDJ91804.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021] Length = 622 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 248/637 (38%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +++++ E+ Y+ NK ++ + + + F N+++A ++ L+KG F Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVVYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSETPESKID-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|301169728|emb|CBW29329.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus influenzae 10810] Length = 622 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 109/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + ++ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 ++++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSESKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + ++D+ I + Sbjct: 580 QFGLQLLRSHQSELQVQLIQGLRERAKIEINDSFINQ 616 >gi|33597580|ref|NP_885223.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis 12822] gi|33574008|emb|CAE38331.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis] Length = 671 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 106/657 (16%), Positives = 235/657 (35%), Gaps = 42/657 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F + Sbjct: 21 MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q++G + + + +++L+ L+ L D G G + IA Sbjct: 80 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ + Sbjct: 140 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ ++ R PE + Y++ D Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------NQKEADEAF 287 + +++ ++++ + YE+NK ++ PE R V ++ K + A Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 318 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 Q+ F +LA + + + G L + +LAK + V+ Sbjct: 319 QAAADPAGFAELARKNSQDTGSAAQGGDLGWAPLPAPLQQAAQALAKD-QVSGVVDTPTA 377 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406 + I V++ +P EVK ++ +++R AS + + + + S+ + Sbjct: 378 FHILKVTDFQPGSVKPLSEVKDEVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 437 Query: 407 REKIVSIDLPLVDFAGKDVKGK------------EVAAIPYKEQLLFRVFGKDDPLSKDH 454 + + + G + ++ P Q+LF + L+ Sbjct: 438 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSG- 496 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L + + V++ P+ LE+V ++ + A+ + Sbjct: 497 VIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLLGERAAQAARQAGEAAL------- 549 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVV 573 K+ + ++R D +N + V + + G YVV Sbjct: 550 KSVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVV 607 Query: 574 FKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 ++ + G E+ D + L+ + +V+ L+ QY V + + Sbjct: 608 ARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKG 664 >gi|145628054|ref|ZP_01783855.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21] gi|144979829|gb|EDJ89488.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21] Length = 622 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 251/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + +LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGNLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|145632388|ref|ZP_01788123.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655] gi|144987295|gb|EDJ93825.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655] Length = 622 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 114/638 (17%), Positives = 246/638 (38%), Gaps = 35/638 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + S + AK L ++ + FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLSNSKAAKFILGLITLSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + QE +Q+ G ++ S L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEARAQREGEAF-MAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMI 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P F K KF + V+ L + + Y L + Sbjct: 119 KRAIVTDPNFQVK-GKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIV 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 178 PAQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYI 237 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 K +++++ E+ Y+ NK ++ + + + F N+++A ++ L+KG Sbjct: 238 DLSADNISKNLQVTDIEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVVYEELQKGAN 294 Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 295 FADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIV 352 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V K S + VK I + +R + + K+ + ++ + Sbjct: 353 LVQERKA---QSLENVKAQIVDLVRKSLIESRYFSLEKQASDKAFE--DSKSLNTAAQAA 407 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIK 469 + + D+ + + V A +++ +F D + + D + V++ Sbjct: 408 GVKVQESDYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVL 463 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + + LEE D++ K K ++ KA Q V + S+ ++ D G + Sbjct: 464 DRKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFS 518 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD- 588 + +N++ S E + + VV + + G + EK+ Sbjct: 519 SEQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKEL 578 Query: 589 -KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 579 SQFGMQLLRSHQSELQLQLIQGLRERAKIEVNDSFINQ 616 >gi|33601983|ref|NP_889543.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica RB50] gi|33576421|emb|CAE33499.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica RB50] Length = 671 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 106/657 (16%), Positives = 235/657 (35%), Gaps = 42/657 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F + Sbjct: 21 MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q++G + + + +++L+ L+ L D G G + IA Sbjct: 80 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ + Sbjct: 140 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ ++ R PE + Y++ D Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------NQKEADEAF 287 + +++ ++++ + YE+NK ++ PE R V ++ K + A Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 318 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 Q+ F +LA + + + G L + +LAK + V+ Sbjct: 319 QAAADPAGFAELARKNSQDTGSAAQGGDLGWAPLPAPLQQAAQALAKD-QVSGVVDTPTA 377 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406 + I V++ +P EVK ++ +++R AS + + + + S+ + Sbjct: 378 FHILKVTDFQPGSVKPLAEVKDEVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 437 Query: 407 REKIVSIDLPLVDFAGKDVKGK------------EVAAIPYKEQLLFRVFGKDDPLSKDH 454 + + + G + ++ P Q+LF + L+ Sbjct: 438 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSG- 496 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L + + V++ P+ LE+V ++ + A+ + Sbjct: 497 VIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLLGERAAQAARQAGEAAL------- 549 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVV 573 K+ + ++R D +N + V + + G YVV Sbjct: 550 KSVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVV 607 Query: 574 FKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 ++ + G E+ D + L+ + +V+ L+ QY V + + Sbjct: 608 ARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKG 664 >gi|229843938|ref|ZP_04464079.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1] gi|229812932|gb|EEP48620.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1] Length = 622 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|148828172|ref|YP_001292925.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittGG] gi|148719414|gb|ABR00542.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae PittGG] Length = 622 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 249/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S E + + VV + + + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQSSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] Length = 633 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 114/637 (17%), Positives = 248/637 (38%), Gaps = 31/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + W+A + + ++ +PF +WGL + F SG V + N Sbjct: 1 MLQAIRDRASGWLAYVIIGLITIPFAVWGLGEY-FGGSGPLVAAEVNGTDIQVRDVHNEA 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +++ G + + G+ + L+ L+ L Q + G +A + EI Sbjct: 60 RAQRDQMARMFGGQIPDDLLDEEGIRMQALETLIRQELLRQAADSAGFKAAGDSILREIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F + +FS + + L + ++ ++ + + + + G P++ L+D Sbjct: 120 GMPVFQ-EGGQFSRERYAQLLNAQRLSPSDFERDIGRSIILSQLQGGIQATGFPADALVD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R + + + + ++E +D++ E RI+Y+ D Sbjct: 179 DFSRLRNQTRVASWRIFPVDDFDQPDVVDDKAIEAYYEANQDDFTTEERVRIAYLQLDPE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKK 295 E +++S D+++ YE N+ +Y PE+R V Q+ + + + +E L G+ Sbjct: 239 ALEDAVDVSEDDVRQHYEVNRSRYEEPELREVRQIRIQDTGEEGEAKINELRDRLDDGED 298 Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LAE + SLG ++ + D +L IF+L + G + + G+ I Sbjct: 299 FAELAEAYSEDSLSADRGGSLGEIARGDL-DRTLETIIFTLPE-GLISRPVRTDRGWFIL 356 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS-MDEISRREKI 410 V++I+ + F++V+ ++ +R A + L++ + D + + Sbjct: 357 EVTSIQEARPQPFEDVRDEVERDLRDRSAEQM---QIDALDDLMGQAAEYPDSLEPAAEA 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 +++ D+ + G +A F +D + + L DGS + ++I+E Sbjct: 414 TRLEIQTSDWFTRG-SGDGIAQHRSIRNAAFDPRVLEDGHN-SEAIDLQDGSTVVLRIEE 471 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P+ R L EV ++++ + A+ +L+ + + Sbjct: 472 HEPSEVRPLAEVEDEIRERLRREAAADAAREAGEELIARLRDA--DDWADAIEDDDAWQM 529 Query: 531 TNQINRMDNENKFFGYDGISQ--VFSGPVEMVKCFPIEN---GLSYVVFKVTNSKVGPVQ 585 ++ R + G G Q +F I G + + Q Sbjct: 530 EREVRRDSPVDGDNGVPGGLQQHLFRLSAPGEDAVEISGTRLGTGDFAVAILHEVRLDEQ 589 Query: 586 EKDKFISY-----LTQMMNKDLLDSVIAYLKSQYSVT 617 E D + + + +A+L+S+ +T Sbjct: 590 EADAAMRQQARELMRNAYASAEFRAYLAWLESEADIT 626 >gi|148826351|ref|YP_001291104.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE] gi|148716511|gb|ABQ98721.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE] Length = 622 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 247/637 (38%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGIANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISKNLQVTDVEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAD 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKE 470 + + + + + V A +++ +F D + + D + V++ + Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S E + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|319775064|ref|YP_004137552.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae F3047] gi|317449655|emb|CBY85861.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae F3047] Length = 622 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 251/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKF--LNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + ++ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENSLNEKAQQAVKKLNENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFGMQLLRSHQSELQLQLIQGLRERAKIEVNDSFINQ 616 >gi|229846060|ref|ZP_04466172.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1] gi|229811064|gb|EEP46781.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1] Length = 622 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 113/637 (17%), Positives = 247/637 (38%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISKNLQVTDVEIAQYYQDNKAQFMTQ---RLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG + +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAD 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKE 470 + + + + + V A +++ +F D + + D + V++ + Sbjct: 409 VKVQESGYFSR----QNVPAGLNFPNVIYTIFESDSTNIGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPESKID-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S E + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|221198210|ref|ZP_03571256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2M] gi|221209208|ref|ZP_03582200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2] gi|221170946|gb|EEE03401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2] gi|221182142|gb|EEE14543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD2M] Length = 644 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 237/659 (35%), Gaps = 45/659 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGAQFDIKAFDTPDHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + ++ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL + P++A L +++ +K + PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+AE+ + LG ++ + D+ F+L K+G+ + Sbjct: 300 LLADVKARPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGEIS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I +++KPS F EVK +IA ++ A++ ++ + + Sbjct: 359 GVVQSDLGFHILKATDVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTV 456 S+ + + K+ + + + + L VF D + + Sbjct: 419 KSLQPAADKYKLTIQTATVTPTPNPQL---PATSPLNNAKFLAAVFANDSVKAHNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K K+ Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 S + ++ +S V+ + + + + Y ++ Sbjct: 535 TEGFAAAQKISRTQSQGLS----------PAALSAVYKVDPKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +V G + + + QM + ++ + L+ + V ++ + + + Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLTALRDRSKVKLYGSTASQSQGND 643 >gi|319897486|ref|YP_004135683.1| peptidyl-prolyl cis-trans isomerase d [Haemophilus influenzae F3031] gi|317432992|emb|CBY81363.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae F3031] Length = 622 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 109/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELEKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ K+ Q V + ++ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKSQQAVKKLNENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + ++D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEINDSFINQ 616 >gi|221067844|ref|ZP_03543949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni KF-1] gi|220712867|gb|EED68235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni KF-1] Length = 632 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 112/647 (17%), Positives = 243/647 (37%), Gaps = 50/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ +V + +++ F+ G++ F+ S S TV V + + N+ Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + + + +++ S L+ LV L + L ++ + Sbjct: 59 RAESDRLRAQNPSM-DAKLLDSPEARYATLEKLVRDRVLAAAATKMHLTTPDAQLVRTLR 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + + +G+ + + + + L+ V+G + Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGAVSSTSFTTAA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L QA ++ R + + P+ A L ++E + ++ PE + Y+ Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYESHTSQFKQPEAATVEYVQL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 D+ EK I +S D+L+ Y++N + PE R ++ K+ A + K Sbjct: 238 DLATVEKSIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQ 297 Query: 294 ---------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 K F Q+A+ + G + + LG F ++ + +++F + K+GD + Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGRDAMVKP-FEEAVFKM-KQGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I ++ IK +F+E++ + ++ +A K E + + Sbjct: 356 VVESDFGFHIIELTGIKQPKVPTFEEMRPKLEADLKQQQAQRKFAEVAEAFSNAVYEQSE 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V ++ L +F D +K +T V Sbjct: 416 SLQPVAEKFKLSIQKAENVTREP----APGAQGPLASKRFLEALFSADSLENKRNTDAVE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE-YSKEGKN 516 L + + ++ PA + ++EV +K+ + ++AE + + E +K G Sbjct: 472 LAPSNLVAGRVLSYAPAHIQSMDEVGAKLKQLYVAHQSAELAKQEGQAKMAEWKAKPGTA 531 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 +G ++ K + + P + + + Y V Sbjct: 532 QLPAAVEVG------------RDQAKDLPREVLDAALRAPTNALPAWEGVDLGNAGYAVI 579 Query: 575 KVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 KV P Q+ ++ + TQ + + + LK + V + Sbjct: 580 KVNRIAQRPAQDAQVLEQQKAQFTQWASMAEVMAYYDQLKKIFKVQI 626 >gi|260580093|ref|ZP_05847923.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW] gi|260093377|gb|EEW77310.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW] Length = 622 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|299531702|ref|ZP_07045107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] gi|298720418|gb|EFI61370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] Length = 632 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 110/646 (17%), Positives = 249/646 (38%), Gaps = 48/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ +V + +++ F+ G++ F+ S S TV V + + N+ Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + + + +++ S L+ LV L + L ++ + Sbjct: 59 RAESDRLRAQNPTM-DAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLR 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + + +G+ + + + + L+ V+G + Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L QA ++ R + + P+ A L ++E + + ++ PE + Y+ Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 D+ ++ I +S D+L+ Y++N + PE R ++ + +A++ Sbjct: 238 DLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAARDLPAAEREKAKAKAEQ 297 Query: 286 AFQSLKK-GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K K F Q+A+ + G + + LG F +E + +++F + K+GD + Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKP-FEEAVFKM-KQGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I ++ IK SF+E++ + ++ +A K E + + Sbjct: 356 VVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAEAAEAFSNAVYEQSE 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ + V + ++ L +F D +K +T V Sbjct: 416 SLKPVAEKFKLSIHKVENVTREP----APDAQGPLANKRFLEALFSADSLENKRNTDAVE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 L + + ++ PA + ++EV +K+ + ++AE + + E+ + + Sbjct: 472 LAPSNLVAGRVLSYAPAHTQSMDEVGEKLKQLYVAHQSAELAKQEGKAKMAEWKAKPE-- 529 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 L A++ R + + P + + + Y V K Sbjct: 530 ---AAQLPAAVEVGRDQAR------DLPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580 Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V P Q+ ++ + TQ + + + LK + V + Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWSSMAEVMAYYEQLKKTFKVQI 626 >gi|224368972|ref|YP_002603136.1| PpiD1 [Desulfobacterium autotrophicum HRM2] gi|223691689|gb|ACN14972.1| PpiD1 [Desulfobacterium autotrophicum HRM2] Length = 630 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 114/645 (17%), Positives = 239/645 (37%), Gaps = 36/645 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+++R+ + +W+ KI L ++ + F+ G+ + V + Q + + + S+ Sbjct: 1 MLKLMRENTGSWIIKILLGLIVLVFVFLGMGSI--GAKRGNEVAMINDQPITLNEYQRSY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q+ G +N E + + + K+ LD L+ + + + +E + + + Sbjct: 59 QNIIEQMRQRFGDNLNDEILQMLQVKKQALDRLIDERLISGEADRLKVEVSNQELANSLL 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F K+ F + L+R ++ + + + L V + + S+ Sbjct: 119 DIPAFR-KNGVFDLATYKVVLSRNRMSPESFEAMQLQALREQKVRDLVFSTLSVSDQEAR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 +DY+V N IA LT ++E K+ Y++ + Y+ F V Sbjct: 178 AWYTHSKTQVGIDYLVFNPVAYKDIA-VDAKALTDFYESNKEKYKSEAELTVKYLEFAVK 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291 + + ++ IS+DE++A Y++N ++Y PE ++ ++ADEA Sbjct: 237 DYQDRVTISDDEIKAYYDENLDQYKVPEKVEARHILIRVPQDADEATVEAARNEAETIHA 296 Query: 292 ---KGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G+ F LA+ + LG+F+++ + A++ FSLA G+ + + Sbjct: 297 KAVGGEDFSLLAKTFSQGPTKDDGGYLGTFARDAMVKP-FAEAAFSLAS-GEISKPVRTQ 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG+ + V P+ T + +V +I + + D + + + G ++ Sbjct: 355 FGWHVIKVEAKLPASTTALDKVAAEIRKTLSTAELKNLAYSDAGKAFDGIIDGDDLE--- 411 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + I V AG + + + F D + D Y+ Sbjct: 412 ---QAGLITGKKVLTAGPFTQKGPGDVVADSQGFARAAFAMSLNEIGD-VKEIGDNYYII 467 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++ P LE V V KD E A + E K+ K + + K G Sbjct: 468 KPVEKIDPE-VLPLEAVRDTVTKDLTAQLQQERAKKDAQAFLDEL-KDNKEIKAVAKAKG 525 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R +F I+ V P V + + V K+ Sbjct: 526 LEAKASSLFVRGATVPEFGPNSEITAVAFELSPENPVHPAVVTGSGGFYVISFREQKLPD 585 Query: 584 VQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 E D+ + + + + + LK + + + Sbjct: 586 AAEIDENLDGVKVSMARSKQGSVYNEWLGELKMAAKIDIKKGFLD 630 >gi|264677817|ref|YP_003277723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] gi|262208329|gb|ACY32427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] Length = 632 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 111/646 (17%), Positives = 246/646 (38%), Gaps = 48/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ +V + +++ F+ G++ F+ S S TV V + + N+ Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTES-SQTVARVDGHDITQQDWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + + + +++ S L+ LV L + L ++ + Sbjct: 59 RAESDRLRAQNPTM-DAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLR 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + + +G+ + + + + L+ V+G + Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L QA ++ R + + P+ A L ++E + + ++ PE + Y+ Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 D+ ++ I +S D+L+ Y++N + PE R ++ K+ A + K Sbjct: 238 DLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQ 297 Query: 294 ---------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 K F Q+A+ + G + + LG F +E + +++F + K+GD + Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKP-FEEAVFKM-KQGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I ++ IK SF+E++ + ++ +A K E + + Sbjct: 356 VVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAEAAEAFSNAVYEQSE 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ + V + ++ L +F D +K +T V Sbjct: 416 SLKPVAEKFKLSIHKVENVTREP----APDAQGPLANKRFLEALFSADSLENKRNTDAVE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 L + + ++ PA + ++EV +K+ + ++AE + + E+ + + Sbjct: 472 LAPSNLVAGRVLSYAPAHTQSMDEVGEKLKQLYVAHQSAELAKQEGKAKMAEWKAKPE-- 529 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 L A++ R + + P + + + Y V K Sbjct: 530 ---AAQLPAAVEVGRDQAR------DLPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580 Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V P Q+ ++ + TQ + + + LK + V + Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWSSMAEVMAYYEQLKKTFKVQI 626 >gi|296116178|ref|ZP_06834796.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii ATCC 23769] gi|295977284|gb|EFG84044.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii ATCC 23769] Length = 639 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 121/633 (19%), Positives = 240/633 (37%), Gaps = 16/633 (2%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQE 63 R +WV ++ + + F+ F+ WG+ D L ++ + V VG + ++ + + E Sbjct: 3 RIFVDSWVGRVIVGLFFLTFVGWGVGDVLMNIGTERADVVARVGPDPILVPAYEQALRTE 62 Query: 64 LGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + I+Q++ S+ A + +++L L+ + + GL V EI Sbjct: 63 MPQIAQQMHLDDPSQIPAATREQIAQQVLQRLILQDEVALAARNHGLLVPDSAVRAEIFA 122 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F K+ KF F +RL G+ E I+ + ++ G +LL + Sbjct: 123 IPAFQDKNGKFDRTTFNNRLRSSGMTEARLIELVRAEQASKALMEPIRNGAGAPDLLTRR 182 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + R VD + + A PS+A ++ + + APEY+ ++ Sbjct: 183 IFDLEAQTRKVDIVRVPFAA-QTPAAPSDAQARRFHTNHPWLFEAPEYRHARIVVLSPET 241 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 + + I + +L YE+ +++ +PE R+V+ + PN+ A E + + G + + + Sbjct: 242 VARSMTIPDADLHHMYEQQAQRFNTPETRSVQVITAPNEARARELLTTWQGGASWDAMQK 301 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 GK + + + IP L IF+ +P IH G+ I V ++ P+ Sbjct: 302 SAGKDSASVEMDDIRISSIPSQELGRQIFNAPSD-TVSPPIHTDGGWAIFRVLHVTPAHI 360 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 F+ + + Q + ++ + ++L++ +A G +D I V++ VD Sbjct: 361 SDFESARPALQAQALAERVQAQIGDRVQKLQDAIAGGG-LDSIPSELGAVAV-AGNVDAH 418 Query: 422 GKDVKGK--EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G +G + Q + S + P+G++ V + PAR Sbjct: 419 GMTQEGTPAPIPGSDAVRQAIVARVFSQPKGSSPELLQAPEGTWYAVSVDGVTPARPLSY 478 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 E+ V+ W A L + G I + L+ + +R + Sbjct: 479 EDSAQKVRDAWMDDARRHAADQTATTLYTQAQTMG-GLAHIQPAVP-DLVHSTPFSR-AH 535 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQ 596 + +D F +G YV S P ++ D+ + LTQ Sbjct: 536 DVTEVPHDIAEIAFRLDHTGQSLMVEADGAFYVATLTDISTPDPASQRMLFDRIRTTLTQ 595 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + D+ S L+S + + I + Sbjct: 596 AVADDVEMSYAQALQSIVKPKPNPSAISAVMSA 628 >gi|212709201|ref|ZP_03317329.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM 30120] gi|212688113|gb|EEB47641.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM 30120] Length = 622 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 103/629 (16%), Positives = 245/629 (38%), Gaps = 20/629 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E +R + + K+ L ++ + F++ G++ + S S+ V Q + ++ Sbjct: 1 MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVIGGS-SNNAAEVNGQPISKEQLQQAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +QE + + +G + S L + L+NL++ ++Q+ ++ L A ++ Sbjct: 60 QQERQSLQEYLGDKFSEVASNDNYMKELRTQALNNLINNQLINQYANELQLSASDQQIEQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +F + KF + + L+R IN + + L R + F G Sbjct: 120 AIFAMQIFQ-TNGKFDSEKYREILSRYNINADNFAAQIRQDLVRAQLGKSFTGTEFALPS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V L+ + A + L ++ ++++ +PE ++SY+ Sbjct: 179 EVKAYAELFMQEREVRTATLSLAALQAKQTVTEDELKAYYAANQNSFISPEQVQVSYVEM 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D K ++++E+++ YE+N + + E + + ++K+A LK G F Sbjct: 239 DAASMPK-ASVTDEEVKSYYEQNLKNFTKAEQKLYSMIQVASEKDAQALEAELKGGADFA 297 Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA E+ S + G +L +KG + I YV+ + ++ Sbjct: 298 TLATEKSTDKFSAGNKGVIGWMEATSTPSEIISANLTEKGQVSAPIKVQDNYVLFRLDDV 357 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 KP F EVK I + K+ ++ + +++ E A + ++ E I + + Sbjct: 358 KPEAVKPFDEVKSSIETSLVQDKSVKQFYDLQQKVSE--AATNDNESLASVESISGLKVV 415 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPA 474 + + E+ ++ R+ K+ + V +G +V ++ + Sbjct: 416 TTGWFDRQNPPAELNFPKVVNEVFSERLVDKNGSTGINSDVINVEGDRAFVLRVAQYKAE 475 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 E V D++ K K + ++ + +L+ + GK + K + Sbjct: 476 SIEPFETVNADIEALVKRQKASAQLKADGEKLLAAL-QAGKGDEAL-KAADTQFGAVQTV 533 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGP--VQEKDKF 590 + + G++ + P E + I + ++ ++ +G E ++ Sbjct: 534 SFLAPATDI---TGVAMKMTPPSEGKPTYAIAYDQKDNLLIVQLDKVTLGQPTADELNQL 590 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + M+ + ++++ L++ + V Sbjct: 591 ANEYRGAMSSAVNEALMLNLRTNAKIEVQ 619 >gi|134295955|ref|YP_001119690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] gi|134139112|gb|ABO54855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] Length = 646 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 103/649 (15%), Positives = 233/649 (35%), Gaps = 47/649 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGTIDVQRYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V +VL + A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 PAQRLSELAAQQREVQALVLKSSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKI--EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------ 283 + ++ +++ Y+ N + S + + A Sbjct: 240 SPAAAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRISHIFIAAASNASAADKAAAKAKA 299 Query: 284 DEAFQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKE-YIPDVSLADSIFSLAKKGD 337 ++ +K F Q+A++ + LG ++ + D+ F+L K+G+ Sbjct: 300 EQLLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGE 358 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + V+ G+ I + +KPS F +VK IA ++ A++ ++ + + Sbjct: 359 VSGVVESDLGFHILKATEVKPSVVKPFADVKDQIAVDLKQQYAAKAFTDNAEGFTSTVYE 418 Query: 398 -GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT- 455 S+ + + K+ + + P + L VF D S+++T Sbjct: 419 KAKSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSRNNTQ 475 Query: 456 -VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 V + + + + + + PA L+ + V++ + AE + E K Sbjct: 476 AVDVGNNTLISAHVVDYKPAAVPALDAIKDVVRQKVVAEQAAELAKKDGAAKLAELQKS- 534 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYV 572 K+ S + + +S V+ + + + + Y Sbjct: 535 KSTDGFTPAQKVSRTQSQGLT----------PAALSAVYKVDSKTLPAYVGVDLGADGYA 584 Query: 573 VFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +++V G Q+ + Q+ + ++ +A L+ + V + Sbjct: 585 IYRVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 633 >gi|329123025|ref|ZP_08251596.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC 11116] gi|327471956|gb|EGF17396.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC 11116] Length = 622 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 251/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKF--LNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + ++ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|30995417|ref|NP_439165.2| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae Rd KW20] gi|3183576|sp|P44092|PPID_HAEIN RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D Length = 622 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 250/637 (39%), Gaps = 33/637 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE + +Q+ G + L + I++ ++ L Q+++++ L + Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F K KF + V+ L + + Y L + Sbjct: 120 RAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + +F+ R L+ A S+ + ++E + ++ PE ++ YI Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANF 295 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+ + + LG ++ +P + D+ +L + G ++ I+ Y I Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVGQYSQPINVDGNYHIVL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V K S + VK IA+ +R + + K+ + ++ + Sbjct: 354 VQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAFE--DSKSLNTAAQAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ + + V A +++ +F D + + + D + V++ + Sbjct: 409 VKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSEPINVGDYHTIIVRVLD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + LEE D++ K K ++ KA Q V + S+ ++ D G + + Sbjct: 465 RKAEGVKSLEEAKIDIETFLKRQKAENALNGKAQQAVKKLSENPESKVD-----GINFSS 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 +N++ S + + + VV + + G + EK+ Sbjct: 520 EQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELS 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F L + +L +I L+ + + V+D+ I + Sbjct: 580 QFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616 >gi|152986261|ref|YP_001348850.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7] gi|150961419|gb|ABR83444.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7] Length = 621 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 99/640 (15%), Positives = 231/640 (36%), Gaps = 44/640 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + V+ V + G + + S+ V + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G + L + L L+ L Q +D + I Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D KF+ D F + + + ++ + + + G ++ L Sbjct: 121 QTPEFQ-VDGKFNADRFDQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L + + + + + ++E +K + PE + Y+ Sbjct: 180 SFARLERQTR--DFATLAVKADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++++ ++L A Y+K E R ++ + + DE L Sbjct: 238 SFFDQVKVKQEDLDALYQKEIANLS--EQRDAAHILIEVNDKTSDEQARAKIDEIKARLA 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + + + G ++ + D + +++++L K+G+ + + +GY Sbjct: 296 KGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYAL-KQGEVSAPVKTPYGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S + +K + ++++ ++ E K LE + + ++ Sbjct: 355 HLIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEM 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWV 466 + +G D I Q++ F + + + + L + + + Sbjct: 415 GLKVQTSQPFGRSGGD-------GIAANRQIVQAAFSTEVLEEAANSGAIELDPDTVVVL 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++KE +++ LE+V ++ K AE + L+ E + G Sbjct: 468 RVKEHNKPKEQPLEQVAAGIRDRLAAEKAAEAAKKQGEALIAELREGRAP-----SKPGE 522 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKV 581 + +R + + VF K P +G++ YVV ++ Sbjct: 523 AWKVVEAASRG---QEGIDPKLLQTVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSE 579 Query: 582 GP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 EK + +L ++ + L+ + V Sbjct: 580 PEQAISDDEKAMYRRFLASRSGQEDFAAFRRQLQDKAEVE 619 >gi|261855012|ref|YP_003262295.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] gi|261835481|gb|ACX95248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] Length = 645 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 104/653 (15%), Positives = 247/653 (37%), Gaps = 37/653 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R+ + W+A + ++ +PF++WG+ + FS + V V + +F + Sbjct: 1 MLMDLRERIQGWIAYAIIGLISIPFVLWGVGEY-FSGGKNQPVAEVDGLPISQQAFEQAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q+ I QK+G V++E +S+ LD+++LD +++ L F++ G A V I Sbjct: 60 SQQRQAIIQKLGGSVSAEMLQSLNLDQQVLDQMINERVLRVFVQKAGFRAPDAVVADLIR 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D F + + +A G + + + + + LD Sbjct: 120 SEPAFK-TDGAFDVKKYEAFVAARGTTVANFEAGLKQDIVMQTLENAISESTIVTAPELD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Q + + R + + L+ V +A P++ + ++ +K + PE ++ YI Sbjct: 179 QIVKLRDQTREIGMVRLDRARVIDTVAAPTDGAIEAYYAAHKGEFIRPERVKLRYIELSP 238 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 +++++ +++ Y +K + +RTV ++ K AD A K K Sbjct: 239 KTLAPSVKVTDAQVEQAYANYVKKQEAQVVRTVRHILISVPKNADGAAIEAAKNKALAAR 298 Query: 300 AE-----------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 A + G LG + + +++ +L K G+ + + Sbjct: 299 AAIVSGKTSFADEARAVSDDPGSKNKGGDLGEVAPGQMVKP-FEEAMDAL-KVGEVSEPV 356 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FG+ + V+ +++ + +++ + + + ++L + D Sbjct: 357 RTQFGWHLIEVTKESHPDIKPLADMRDKMVAEVQEQQVEKIYYNEGEKLSDQSYEHP--D 414 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + + + + + D+ ++ G +AA Q F L+ + + L Sbjct: 415 SLIPSAEALGLKVQASDWLDRN-SGTGIAANEKVRQAAFSKEVLKQKLNSN-LIELGVNH 472 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + +++ + PA L EV + K + ++ A + + + + + + + Sbjct: 473 AVVIRVDQHEPATQLTLAEVKDQIATTLKDQAIDKALADAAKNIGKKLTAD-ADPQAVAT 531 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVF--- 574 GA+ + + R + + I F+ K + +G +V Sbjct: 532 AAGATWVAPVWLKRTARDAPI-PAEAIQAAFALAPAPDGQLASKALALSDGNEALVVVEA 590 Query: 575 -KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 K + Q+K+ + + Q + L ++ L+ + +T++ + Sbjct: 591 IKDGDPATISEQDKEALSAQIQQAQAQQTLGVLLKALRDEAKITINQKAEKTA 643 >gi|313672156|ref|YP_004050267.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] gi|312938912|gb|ADR18104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] Length = 623 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 120/650 (18%), Positives = 251/650 (38%), Gaps = 53/650 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML R + + IFL ++ F+ +WG+ + + + + V F+ Sbjct: 1 MLRHFRN--QRKILSIFLWIVIASFIGTIFLVWGVGG---KGNQKTYALKIDDHVVSFNE 55 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + +++ Q G ++ + L K++++ ++S L + L V Sbjct: 56 YKTTYENISNTYRQLFGANIDQKM-----LSKQVIEEIISKYLLLDEANRLKLPVTDAEV 110 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI + P F + +F + ++ L I + + + L + G+ + + Sbjct: 111 LAEIKKVPAFQ-VNGQFDKNRYLEVLRLNQITPETFENDIRVNLLLNKMKGVIATSVYVN 169 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + + R + + YI ++ + L +++ + K+ + P ++ Y+ Sbjct: 170 DQEILKEYRMRNKAVEISYIKVSPEDFEKDVKVDDKSLEKYYLENKNEFLEPTKAKLKYV 229 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEA 283 F + IS ELQ+ Y KNKE++ E ++ K+A Sbjct: 230 EFAPDNVKIDDNISEQELQSYYLKNKEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKA 289 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +E ++ K G KF +LA++ +S LG + + D++FSL K+G+ + Sbjct: 290 EEIYKKAKSGAKFEELAKQYSDDISKNNGGDLGFVKRGMMIK-EFEDALFSL-KEGEISK 347 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK-RLEEFLALGT 399 + SFGY I P +F EVK I + + K + K+ + + +E + G Sbjct: 348 PVKTSFGYHIIKNEKYLPKKEYTFAEVKDQIRSTILKDKIMSQFKQSVQAKYKEIQSFGN 407 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 I + K S+++ D+ + V+ + E + + D ++ ++ L Sbjct: 408 LSGYIVKNPK--SLEIKETDYISEGVRDTFIP-----EDIKNELLKLD--KTELSSLYLI 458 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 +G Y +I + I LE++ V K + + + KA++ + N + Sbjct: 459 NGKYYLFEIADKITPTVPPLEKIKEKVIKSYVRKQASIIAKQKADEAAGK-----SNINE 513 Query: 520 IGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 K L + R+D N +F+ + I++G SY V V N Sbjct: 514 AAKFLNLAPQDVAAFKRIDPIPNIGVNSTMTEAIFTTKAPAMVKSSIQHGSSYYVIYVKN 573 Query: 579 SKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++++ YL + + +S I LK + + NL++ Sbjct: 574 FLPASDDKLPEQRNTIAQYLINLKQTEAYNSYIEKLKKDARIDISPNLLE 623 >gi|330994544|ref|ZP_08318468.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp. SXCC-1] gi|329758398|gb|EGG74918.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp. SXCC-1] Length = 665 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 125/638 (19%), Positives = 263/638 (41%), Gaps = 18/638 (2%) Query: 1 MLEII-RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57 ML + R +WV +I + F+ F+ +G+ D L ++ + VG + + S+ Sbjct: 22 MLSFLYRVFVDSWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGSRPILVQSYQ 81 Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 N+ + E+ ++Q + ++ A + +++L LV A + + + GL V Sbjct: 82 NALQSEMPQVAQSMHLSDPAQIPPATREQVARQVLQRLVLQAEIAEAADRHGLIVPDSVV 141 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI P F G + +F +F RL R G+ E I+ + + ++ G Sbjct: 142 RDEIFSIPAFRGTNGQFDRALFNDRLHRTGMTEGRLIELVRQEQASRVLLEPIRDGATVP 201 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 ++++ + F + R++D + + A P+ A L ++ + + APEY+ + Sbjct: 202 DVMVRRLFDFEAQTRTIDLVRVPFDSQQVTATPTPAQLARYHANHPWEFTAPEYRHARVV 261 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + ++I++ ELQ Y+ + + +PE R+V+ + P Q A Sbjct: 262 VLSADTIGRMLDITDAELQKSYQDQAQTFSAPERRSVQIVTVPTQDRATALRARWTDAGA 321 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + Q+ ++ G+ + + L + IP L +IF+ A + G+V+ V+ Sbjct: 322 WAQVQKDAGRDAAAVELPGMKQTDIPSADLGRAIFA-APVDVTQGPVKSEGGWVVFRVTT 380 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI-- 413 + P+ T F +VK+ + +Q+ T+A + + ++L++ +A G +D I V++ Sbjct: 381 LTPAHTTPFADVKQALHDQIAHTRAQALLADRVQKLQDAIAGGG-LDSIPADLGAVAVSG 439 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 DL + + ++ ++ RVF + + V PDG++ V + P Sbjct: 440 DLDASGNTHEGTPAPIPGSDAVRQAVIARVFSQAKG-ASPVLVQGPDGAWYAVSVDGVTP 498 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 L E V W+ +A + +G+ L + Sbjct: 499 GHALDLAEAGPRVAAAWQADARRHMADQQATAFYNQA--QGQGGLAHVTPAVPGLEHSQP 556 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK-VGPVQEKD---K 589 I+ M + + +F ++ + E G SYVV +T P +KD + Sbjct: 557 ISPM-QPAPEIPREVAALIFRL-EKVGQNVMTEAGDSYVVATLTAINHPDPATQKDLYGR 614 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + LTQ M +D+ L++ +++ ++ + Sbjct: 615 VRAGLTQSMGEDIEMGYGGALEAIVKPRPNESALRAVM 652 >gi|152978448|ref|YP_001344077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus succinogenes 130Z] gi|150840171|gb|ABR74142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus succinogenes 130Z] Length = 624 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 109/638 (17%), Positives = 252/638 (39%), Gaps = 34/638 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E + A+ WV+K L + V F++ G+ L S S SS V V +++ +F + Sbjct: 3 MEKLHHAANNWVSKAILGAIAVSFVVSGMYGYLGSSSDSSAV-KVNGEEISQQNFQQQYN 61 Query: 62 QELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 E + Q++G + + GL + +L+ L+ L Q+ +++ + ++ E Sbjct: 62 NEFQRLEQQLGPQFAALSDTPEFTAGLRQTVLNRLIDQELLRQYGDELNIAVSDEQIKRE 121 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I R+P F D KFS++ + L ++ Y + + L + Sbjct: 122 IVRTPEFQ-VDGKFSNETYQLFLRNNNLSSDTYAQYLREALRLAQLQSALTDTAFLLPAN 180 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + +F++R+V L A + + ++ K + PE ++ Y+ Sbjct: 181 QEAFAKGFFQSRAVRLAHLPLAAEIAKQTVTEEEIQNYYNSNKSAFTVPELIKVQYLDLT 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 EK +++++ E+Q Y+ +K + + + + N+KEA +A+++L+KG F Sbjct: 241 QAAAEKTVKVTDVEIQQYYQDHKADFTTKGQERLAHIQLANEKEALDAYEALQKGADFAT 300 Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ ++ LG + +P D+ L + G ++ ++ + I V Sbjct: 301 LAKEKSNDKVSAVNGGDLGWLNTGDLPK-EFEDAATIL-EVGHYSTPVNVDGQFHIIQVL 358 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 K S + ++VK+ I +R + K+ E + ++ K ++ Sbjct: 359 ERKDSALLPLEQVKERITQAIRQDLVGNQFYAMEKQAAEKAFEDRT--SLAAAAKAAGVE 416 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESI 472 + D+ ++ V A ++ +F D + + + + V++ + Sbjct: 417 IKETDYFPRN----GVPAELNFPSVVNAMFDGDVSQGNVNSEPMNVGEQHSIVVRVLDHK 472 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 R LE+ ++ K K + ++A +V + D G + Sbjct: 473 AEGTRSLEDAHQEIADFLKRRKAETAMLAQAENIVKDLD------ADKPLPAGINFGAEE 526 Query: 533 QINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQE--K 587 Q +N++ +F+ N ++ + + G V + Sbjct: 527 QWVYAENKDPALNNI----IFTMQPKENGTAYKAAKANNGDVMIVALDKVEDGQVDNALR 582 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 +F + + Q +D ++ L+++ + V+++ I++ Sbjct: 583 QRFDAQVLQDKMRDAQLHLLQSLRAKAKIEVNESFIKQ 620 >gi|83951843|ref|ZP_00960575.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM] gi|83836849|gb|EAP76146.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM] Length = 609 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 119/596 (19%), Positives = 252/596 (42%), Gaps = 27/596 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 +V SVG K+ + + + + E+ + + G ++ +AR +GLD+ +L LV+ Sbjct: 26 SGNVQSVGSVGDTKIDINDYARTLQNEIRALEAQRGERLSFAQARELGLDQAVLGRLVTT 85 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L+ + IG+ + EI F G D KF + L + G+NE + + Sbjct: 86 TALEDETQRIGISIGDANLRDEILNIQAFQGLDGKFDRQAYEFALQQAGLNETRFEEDMR 145 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215 +RT + G V G+R D + E R + + VL + + +P+ L Sbjct: 146 AETARTLLQGAVVAGVRAPEAYGDTLINYLGERRDISWAVLARADLQTGLPEPTEEDLAA 205 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + E ++ + PE K I+Y +E+ D L+A Y++ +Y PE R VE+L Sbjct: 206 YHEAHQAEFTTPETKAITYAWLTPDMILDTVEVDEDALRAAYDERSAEYNQPERRLVERL 265 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 VF + A +A ++ G+ F L + LSD+ +G ++ + + D++F+ A+ Sbjct: 266 VFLDSAAASDALARIESGEASFEDLVAARDLELSDVDIGDVTRAQLG--AAGDTVFA-AE 322 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + G + V+ + + V F+E + + +++ +A ++ +++ Sbjct: 323 AGDVVGPVDTDLGPALFRVNGVLAAQVVPFEEAEPMLRDELAGDRARRVIESSMDNIDDL 382 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G +++ +++ ++L +D+ + +G + Q V D P Sbjct: 383 LAGGATIEGLAQE---TDLELGKIDWHPEVTEG--IGGYESFRQAAAAVTTDDYP----Q 433 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L DG +++ E+I R + +EEV + + W E + S++ + S+ G Sbjct: 434 VIELDDGGLFAMRLDETIAPRVQPVEEVRDALAEAWTRQTIVEALRSQSEADIAALSQ-G 492 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 +F ++G + T I R + + I VF V+ L + Sbjct: 493 TSFEELGFT---DISTAKDITRRGFDVDA-PREFIETVFEMEPGQVEIVEGNGRL--FLL 546 Query: 575 KVTNSKVGPVQEKDK------FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ + +D + +++DL ++ ++++ + + + + Sbjct: 547 RLDAVNAPDAEAQDLVVLSQVLKNQAANSLSQDLFQALADDIRARAGIALDQSALN 602 >gi|90407416|ref|ZP_01215600.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp. CNPT3] gi|90311447|gb|EAS39548.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp. CNPT3] Length = 635 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 118/642 (18%), Positives = 259/642 (40%), Gaps = 37/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ S+ AKI L+V+ + F + G+S L +S ++V ++ +S + Sbjct: 1 MLDKMREGSQGIAAKIILIVIILSFALAGVSGYL-GGGNASVAITVNGDEISNASVEQEY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K E + Q+ G + + + + L+S + Q I D+ L +V Sbjct: 60 KNERSRLQQQYGEQFDIIAASPGFVKQVRAQAKQTLISNLLIAQSIADMDLRIGDEQVKD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + P F K +F+++ ++S L R ++ + L R ++ V + Sbjct: 120 AIRKMPEFQVK-GEFNNEQYLSTLRRASYTPAKFSQSIKQDLVRRQLLNTLVSSEFILPI 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +D + + R + ++ R P S + ++++++ N+++ + + Y+L Sbjct: 179 EIDNVDKLQAQQRVARILNISGRAFPQTTPISIKDIQAYYDQHEQNFQSLQQVSVDYVLL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292 D H+ +K IS+ + QA Y+ ++ Y E R V ++ K+A +L+K Sbjct: 239 DAHKLSQKTVISDVQAQAYYDDHQVDYQRVERRKVAHILVQGHSADALKKAQTILLALEK 298 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F LA + + + +D +L F + D + F+L K + ++ +FGY Sbjct: 299 GADFSVLARAKSEDILSAKNDGALDWFEHG-VMDEQFDKASFALTAKAPLSDIVKSTFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407 I + +I+ T+ F +VK + ++ A E+ + ++L E S+DE + Sbjct: 358 HIIKLLDIQQKQTLPFAQVKATVMKTLKKENADERYYDLQQQLREVAFEAPDSLDEAA-- 415 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 +V+ + + +D + P LLF + +++ L+ D L D + V+ Sbjct: 416 -GVVNTQIQHIALFSRD-NVPALLDDPALLNLLFDIDFREEGLNSD-VFELSDKRSIVVR 472 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + A L++V +K + + + + VLE +G++ + ++ Sbjct: 473 VSNFKEAATESLDKVSDTIKSQL-SEQNSRAKAHDFTLQVLEKLNKGESVEALLQDKSLQ 531 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-------NGLSYVVFKV---- 576 ++R E + +VF+ + + + ++ Sbjct: 532 FSKALTLSRYSRE---VNPQVVQKVFTLAKPQADKVTRDWVSTNDTGDTGFAIIELSKVL 588 Query: 577 -TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 T S K++ + L + ++ + I L + Sbjct: 589 DTKSATTMPALKEQLGAMLVRGGSEATYQAWIMQLMQNADIK 630 >gi|28198390|ref|NP_778704.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1] gi|182681032|ref|YP_001829192.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M23] gi|28056460|gb|AAO28353.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1] gi|182631142|gb|ACB91918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M23] gi|307579500|gb|ADN63469.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 655 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 117/671 (17%), Positives = 243/671 (36%), Gaps = 64/671 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R+ + W+A + +L +PFL + V G V + Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGVGGKDDVAQLQASPTWWKSAPAFW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 RQ + F + + Q + G ++ ++ +K+LD L+ + Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158 E G+ V IA F K KF+ D + LA+E + Y + M Sbjct: 120 LVAEGAGVVISDEAVRTIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYESYVRSM 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + + N L++ + R+ + + L + A+ S+ + +W+ Sbjct: 179 MQLSMIPSAIFDSGFVPNTELERILALLGQTRNAELVTLPALKL-DTAEISDMQIKEWYA 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 ++D++R PE Y+ D + S L+ Y+ + E R ++ Sbjct: 238 VHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAMLRKRYDAQQRGEAQNEQRKAAHILIT 296 Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323 +QK A+ L K G F LA ++ G + LG + + Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K G+ I FG + + IK + + F+ V+ +A + + Sbjct: 357 -FEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKA 414 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T + S + + L + +AA P +++LF Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + D + + + +++ + L++V V + + ++ +S Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRAEKDEASA 529 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557 A+ LV K G+ ++ K + + R + + +FS Sbjct: 530 ADALVARLQK-GETLEEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 V +++G Y VF VT G P ++K L Q+ + + + ++ Sbjct: 586 PTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRK 644 Query: 613 QYSVTVHDNLI 623 ++ VT+H + + Sbjct: 645 RFKVTIHKSQL 655 >gi|308270798|emb|CBX27408.1| hypothetical protein N47_H22300 [uncultured Desulfobacterium sp.] Length = 632 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 116/639 (18%), Positives = 255/639 (39%), Gaps = 34/639 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + +W+ K L ++ V F+ F + ++ V V + + + ++ Sbjct: 1 MLDFMRKNAGSWMIKAILGIIVVVFVF--WGVGSFRSNRANRVAKVNGEVITVREYQEAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + I K+G N E ++ KK LD+L+ L Q + + + I Sbjct: 59 NNLVEQIRAKLGTNYNEETLKAFNFKKKALDDLIVKKLLVQEAKKLKFRVTDDELVKLIG 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D F+ + L+R E+ + L ++ ++ S+ Sbjct: 119 SIKAFQ-VDGVFNKKEYERVLSRNHTVPDEFEATVRESLIMERLISFITSSVKVSDNEAL 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + +VDY+ I +PS L ++F+K K++YR + +++Y+LF Sbjct: 178 EWFNWKGASVNVDYVFFTPDKYNGI-NPSQKELNEYFDKNKESYRTEKKVKVAYLLFSPD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQ 288 ++++ ++E++ YE N +K+ +PE ++ + A D F+ Sbjct: 237 SFITQVKVDDNEVKEYYENNIDKFTNPETVEASHILCKIDEGANPAAVQAAKQKADNVFK 296 Query: 289 SLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K+G+ F +LA++ S LG+F K+ + + A FS+ K+G+ + + Sbjct: 297 MIKEGQPFEELAKKYSDCPSKADGGHLGAFGKKDMVEP-FASKAFSM-KQGEISEPVLTK 354 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FG+ I V + + +E + +I ++ KA + ++ +++ + +M+++ Sbjct: 355 FGWHIIKVEKVNKEKMLVLKEAESEIRKKLISEKAKKLAYDEAEKICDL---AINMNDLI 411 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + + + + DF K K AA + L+ + + + Y Sbjct: 412 KASEKSGVKIKTTDFFSK--KDASAAAGADNQALMEAGVFEMSDKEISDVKEIGN-RYCV 468 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 ++ + + + L++V VK D E+ A +++L K GK+F G Sbjct: 469 AEVTDIMLPKIPVLKDVAETVKSDVIKEMQWEKAKKDA-EVLLSALKTGKDFTQESLKYG 527 Query: 526 ASLLTTNQINRMDNENKF-FGYDGISQVFSGPVE-MVKCFPIENGLSYVVFKVTNSKVGP 583 + T R + F + P++ Y + + + P Sbjct: 528 LTPHETGFFARSGPVGSIGYEPQLSEAAFKLSDDNKYAETPVKGKNGYYIMRFKERENPP 587 Query: 584 VQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Q EK++ + L + ++ S + +KS + + Sbjct: 588 EQDFDKEKERIVKALLEQKKENTFSSWLEKIKSSSEIII 626 >gi|78485440|ref|YP_391365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira crunogena XCL-2] gi|78363726|gb|ABB41691.1| peptidyl-prolyl cis-trans isomerase D [Thiomicrospira crunogena XCL-2] Length = 638 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 110/642 (17%), Positives = 251/642 (39%), Gaps = 33/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ W+A + + ++ + F ++G+ V V + V + F+ + Sbjct: 1 MLQSIRNHAQGWIAWVIVGLIILTFALFGIDQYA-KGDKIIVVAEVNGEDVTANEFLTLY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + G + + + + L +++D L+ + Q+ + + + ++ I Sbjct: 60 SRQQARLKNQFGEMYD-QVVKDQQLRDEVMDALIESEVVRQWADSHNMMISNQQLSATIE 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + +F KD +F ++ L + G+N + + L + + ++ L Sbjct: 119 SAEVFQ-KDGQFDQQLYQDILLQNGLNVARFEYEQRQFLIENQNRQLTMASAITNDTQLA 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q F+ R V+Y+ ++ R A ++ + ++ K+K+++ PE +SY+L Sbjct: 178 QLAALQFQQRKVNYLRVDQRPFMQEAQITDDEIQTYYNKHKEDFITPEQVVLSYVLLSKK 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---------EAFQSLK 291 + K+ + + L+ Y+ NK+++ PE R ++ E+ E L Sbjct: 238 DLADKVSVDDAILKRFYQDNKDQFTQPEKRQASHILVKVDAESQDAEAQKTIKEIQAKLA 297 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F LA+ ++G ++ + + ++FS+ K + + + FGY Sbjct: 298 DGEDFAALAKTYSDDPGSANMGGDLGLFQQGMMVPAFDKAVFSM-KLNEISDPVKTEFGY 356 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + ++ I+P +F EVK ++ R +A ++ ++ ++L D + Sbjct: 357 HLIKLTKIQPKKMQAFNEVKAEVETLYRRQQADKQYFDELEQLNTIAYEQA--DSLIPAA 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 V + + D + E+ + F K L+ PD S + Sbjct: 415 DAVGLKIETTDPFSRVGGDDEITSNGKVITAAFSEEVKKSGLNSSAIEISPDVSVVVRVK 474 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 K + + L +V D++K K + + A L + K + D+ K+ G Sbjct: 475 KVID-EKQQSLADVKVDIEKILKREAGVKASAELAKTLREKLLKGEQKMADLKKD-GVEY 532 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSK--- 580 + R EN+ +F P + + G S VV +V++ K Sbjct: 533 SNVGWLER---ENRRVLPQLTQAIFKAPKPKEGQPTYTTYALPTGDS-VVIEVSDVKEGN 588 Query: 581 -VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + + + L Q+ +D+ I + + + +N Sbjct: 589 LPDDQSQLAQMKAALVQLAGVSEVDARIKAMVAAADIERKEN 630 >gi|190150329|ref|YP_001968854.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263670|ref|ZP_07545279.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915460|gb|ACE61712.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870983|gb|EFN02718.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 625 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAR 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLTVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410 V K + ++VK I +R + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESLAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|261493077|ref|ZP_05989616.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311256|gb|EEY12420.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 623 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 244/641 (38%), Gaps = 38/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L S S V V +++ F N+ Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNS--VAKVNGEEISQQLFNNTL 58 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +E ++ ++G + ++ +L+ L+ L Q+ +++ L ++ Sbjct: 59 NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI S +F +D KFS++++ L ++ Y + + ++ + + Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V + S L ++E K APE + Y+ Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTVSEQELRAYYEANKTKLLAPEKLAVEYVTL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + E K+EI+N+++Q Y++NK Y + + + ++ EA Q+LK G+ F Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + + LG P + D++ +L G + + Y I V Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPK-AFEDAVANLT-AGQMSAAVKVDNAYHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVS 412 KP + +VK IA +R + + + + +S++E+++ + Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAFENNSSLEEVAKAGNVEL 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----SYMWVQ 467 L + V E++L +F + +K ++ AL G ++V+ Sbjct: 416 QKTDLFTR-------ENVPTALQNEKVLKVLFEGELRQNKQNSDALDVGNDANPQTLFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + R + +E V+ K K + + +K + V ++ GK++ Sbjct: 469 VSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNE--------GKSVDVK 520 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584 + M E + G +F+ K V+ + N G Sbjct: 521 FNAPQTLVYMQAEVENPVLAGT--IFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNA 578 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ Q L + + L+++ S+ V+++ +Q+ Sbjct: 579 EQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619 >gi|307250251|ref|ZP_07532205.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857692|gb|EFM89794.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 625 Score = 352 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLTVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410 V K + ++VK I +R + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|33592803|ref|NP_880447.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama I] gi|33572451|emb|CAE42019.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama I] gi|332382216|gb|AEE67063.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS] Length = 651 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 106/657 (16%), Positives = 233/657 (35%), Gaps = 42/657 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F + Sbjct: 1 MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q++G + + + +++L+ L+ L D G G + IA Sbjct: 60 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P + +FS + + LA +G++ + + L+ V+ + Sbjct: 120 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R+V A S + W++ ++ R PE + Y++ D Sbjct: 179 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------------NQKEADEAF 287 + +++ ++++ + YE+NK ++ PE R V ++ K + A Sbjct: 239 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 Q+ F +LA + + G L + +LAK + V+ Sbjct: 299 QAAADPAGFAELARKNSQDTGSAGQGGDLGWAPLPAPLQQAAQALAKD-QVSGVVDTPTA 357 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406 + I V++ +P EVK ++ ++R AS + + + + S+ + Sbjct: 358 FHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 417 Query: 407 REKIVSIDLPLVDFAGKDVKGK------------EVAAIPYKEQLLFRVFGKDDPLSKDH 454 + + + G + ++ P Q+LF + L+ Sbjct: 418 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSG- 476 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L + + V++ P+ LE+V ++ + A+ + Sbjct: 477 VIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLFGERAAQAARQAGEAAL------- 529 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVV 573 K+ + ++R D +N + V + + G YVV Sbjct: 530 KSVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVV 587 Query: 574 FKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 ++ + G E+ D + L+ + +V+ L+ QY V + + Sbjct: 588 ARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKG 644 >gi|115351959|ref|YP_773798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] gi|115281947|gb|ABI87464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] Length = 644 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 101/647 (15%), Positives = 239/647 (36%), Gaps = 45/647 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V ++ K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAINGHKITRVEFDGAF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V +V A P++A LT +++ +K ++ PE I Y+++ Sbjct: 180 PAQRLSELAAQQREVQALVQKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + S V + + +A++ Sbjct: 240 SPAAAAASAQPNDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KPS F +VK IA Q++ A++ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 ++ + + K+ ++ + P + L VF D S+++T + Sbjct: 419 KTLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNP---KFLAAVFASDSVKSQNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + E + E K Sbjct: 476 DVGNNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQATELAKKDGAAKLAELQK---- 531 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 +++RM +++ +S V+ + + + + Y ++ Sbjct: 532 -----SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V G Q+ + Q+ + ++ +A L+ + V + Sbjct: 585 RVNAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 631 >gi|89095457|ref|ZP_01168368.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum sp. MED92] gi|89080287|gb|EAR59548.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum sp. MED92] Length = 627 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 111/637 (17%), Positives = 242/637 (37%), Gaps = 32/637 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ +AKI + ++ V F ++G+ + GS+ +V ++V + Sbjct: 1 MLQSIRDNSQGIIAKIIVGLIAVTFALFGVESLVSLTGGSNAPATVNGEEVSQQELVQGM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + ++G + + +L+ L+ L Q E+ GL + I Sbjct: 61 RLQRNQMLSQMGENADPGLLNDNLISSMVLEGLIEQKVLVQSAENQGLVFTDAMIDQLIV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F D KF F + L G++ Y K ++ + L+ Sbjct: 121 STKDFQ-VDGKFDKVQFETVLRNAGLSPLSYRALVRKEKLTEQERIAYLLSAFTLSNELN 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++R Y L A S+ + +F + Y + E I YI+ D Sbjct: 180 EIATLQNQSRDTRYFTLAAEPERAAQTVSDDEVADYFAQNSGQYLSDEQVAIEYIVLDRA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291 + EK +E++ DE+ A Y++ + Y + E+R ++ E A L Sbjct: 240 DLEKDVEVTADEVSAAYQQMVDSYQAQELRQAAHIMVEISDEQEAAAAETKAKALLDRLN 299 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +A+ + +G +++ D++++L +KG + + FGY Sbjct: 300 AGEDFAAVAQSDSDDPASAEMGGDLGVNEKGTFSAEFEDALYAL-EKGQISEPVQTEFGY 358 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + ++ S +F+E K I + KA + L++ + E + Sbjct: 359 HLIKLLDVVESEVPTFEEAKAGIERDLLNEKAELEFVAQLDTLKDVAFSSGDLVEPAETL 418 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 +++ + + + + P + F + ++ D + L + ++I Sbjct: 419 ---GLEIQTSELFSRAGNEAPITSEPKVLSVTFDPSFLQEGVNSD-PIELSSSKVVVLRI 474 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + R+R L+EV + K AE +++KA+Q + + K+G+ + G+ + Sbjct: 475 LDHQLPRERSLDEVKEVITATLLEEKVAEALTTKADQFIAKL-KQGEALESLAS--GSEV 531 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVF--KVTNSKV 581 ++ I+R ++ +F P + +G +V KVT + Sbjct: 532 ISKTDISRG---SQDLPEQLREALFEMPKPAEGEASYAAVDLLDGSKAIVALEKVTENAA 588 Query: 582 GPVQEKDKFISYLTQM-MNKDLLDSVIAYLKSQYSVT 617 +E+ +++ L + LK + + Sbjct: 589 DLNEEEQRYMGMLLNSRFGQQDYQDHSEQLKDKAEIE 625 >gi|116747610|ref|YP_844297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] gi|116696674|gb|ABK15862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] Length = 632 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 103/638 (16%), Positives = 253/638 (39%), Gaps = 34/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML + R+ S++W+ K L+++ + F+ WG A + + VV + + + + N + Sbjct: 1 MLNLFREHSKSWMIKALLILVAIVFVWWG--GATYQSKSDTAVVQIDDEFISERDYYNVY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + ++G + + + L ++LD L++ + + ++GL A V I Sbjct: 59 EKMVTRYRTQLGKAWSEKLVEEMNLKGQVLDMLINRYLVSKAARELGLSASTEEVRRRIL 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F D +F + L +E + + + + ++ ++ + ++ + Sbjct: 119 EYPVFLN-DGRFDQLTYERVLRQERLTPEGFEKDIAESIAYERLLNFIKRQVVVTDEEVT 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + + Y + + + ++F+ +++ Y PE +R S +L+ Sbjct: 178 ADYRTNYGQVQIAYALFDPKSFEDKVTVDEQGAQEYFQNHRERYMEPEKRRFSLVLYKPE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 + ++ D+++ Y+ + +Y + Q++F + EA++ Sbjct: 238 AYMDQAGVTGDDMRRYYDDHISEYRHEQQVRARQILFRLKEDAAEEEIAKARSEAEKVLA 297 Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +KGK F +LA + + + LG+F++ + + +D+ F++ KKG+ + ++ Sbjct: 298 EARKGKDFAELARKYSQDTATAKNGGDLGAFTRGQMLEP-FSDAAFAM-KKGEISDLVET 355 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 G+ I V I P T SF+E + I ++ KA E E ++L + + + + Sbjct: 356 PDGFHIIKVEEIIPEKTTSFEEARSGIEQAVKRQKAREAAYEKARKLLDQVYAKKDLAKS 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + + + + + A D + + LF + KD + Y+ Sbjct: 416 AEEQNMP-VTGGDMWIAETDPLPGFQTPLADISRKLFELPEKDF-----SDIFDTPQGYL 469 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 Q+ P + ++V V+KD + + KA +L+ K + L Sbjct: 470 IAQVTGIQPPQVPSFDKVKQRVEKDCRAERARVLAQQKAAELLDAARKA-NSLETAASGL 528 Query: 525 GASLLTTNQINRMDNENK--FFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKV 581 ++ ++ +R + + QVF +E G ++V ++ ++ Sbjct: 529 KLAVRKSDWFSRHAPDKDLRLLRGGAVDQVFRLEENQPFPDSSLEFGNRFLVCQLLGRRL 588 Query: 582 GP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + LTQ + + + + + + Sbjct: 589 PEGELEKVRADIVKRLTQQKQSMMWTAWLQEQRGKSKI 626 >gi|194364618|ref|YP_002027228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia R551-3] gi|194347422|gb|ACF50545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia R551-3] Length = 651 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 107/659 (16%), Positives = 221/659 (33%), Gaps = 48/659 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46 ML+ +R + W+ + L +L +PFL + ++ G+ V V Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59 Query: 47 ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++QE Q+ G + S +LD L+ + Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESNESKMAVLDQLIDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158 E G+ G V I P F + KF+ + + LA ++ + + Sbjct: 120 LVGEQAGVVIGDGAVREYITTIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ L A ++A + QW++ Sbjct: 180 LQQSVIPSGLQNSGFVTQAETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYD 238 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R E + Y+ + L+ YE K K+ SPE R ++ Sbjct: 239 SHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEKAKFTSPEQRQASHILLT 298 Query: 279 NQKEADEAFQSLKKGKKFIQL--------AEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 +A + + K +E+ G LG + + D++F Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKEQGGDLGWVERGAMVKP-FEDALF 357 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + AK GD + FGY I V+ ++ SF+EV+ +A + E R Sbjct: 358 A-AKAGDVIGPVKTDFGYHIIKVAAVRGGEGKSFEEVRDTLAAEQLKADGERGFNELAGR 416 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 L + + S +++ K V++ L + + V +D Sbjct: 417 LVDAI--NKSPSDLAAAAKEVNLPLQTLGPITRATASGIATDPAVLRAAFSDVLVQDGTA 474 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 S + + +++ P + L++ V + + + S KA VL Sbjct: 475 SDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAIRADR-QRQASDKAADAVLAK 533 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIEN 567 K G + + + L + R + +FS PV ++ Sbjct: 534 LKAGATLQSLAASEKLQLSPMPGLPRS---QPVPTPEINRAIFSAPVPAEGKPSYGKVDV 590 Query: 568 GLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 ++F V G +++ + L+Q+ + I ++ ++ + + Sbjct: 591 NGHALLFAVNKVNPGDIKEVTAEQQKQLKDQLSQIDGMAAAKAYIEAMRKKFVIQTTEA 649 >gi|71276515|ref|ZP_00652790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Dixon] gi|71901997|ref|ZP_00684044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|170729736|ref|YP_001775169.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12] gi|71162692|gb|EAO12419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Dixon] gi|71728242|gb|EAO30426.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|167964529|gb|ACA11539.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12] Length = 655 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 117/671 (17%), Positives = 243/671 (36%), Gaps = 64/671 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R+ + W+A + +L +PFL + G V + Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGGGGKDDVAQLQASPTWWKSAPAFW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 RQ + F + + Q + G ++ ++ K+LD L+ + Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158 E G+ V IA F K KF+ D + LA+E + Y ++ M Sbjct: 120 LVAEGAGVVISDDAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + + N L++ + R+ + + L + +A+ SN + +W+ Sbjct: 179 MQLSMIPSTIFDSGFVPNTELERILALLGQTRNAELVTLPALKL-DMAEISNMQIKEWYA 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 ++D++R PE Y+ D + S L+ Y+ + E R ++ Sbjct: 238 AHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296 Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323 +QK A+ L K G F LA ++ G + LG + + Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D++F++ K G+ I FG + + IK + + F+ V+ +A + ++ Sbjct: 357 -FEDALFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDLDKE 414 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T + S + + L + +AA P +++LF Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + D + + + +++ + L++V V + + ++ +S Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557 A+ LV K G ++ K + + R + + +FS Sbjct: 530 ADALVARLQK-GDTLEEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 V +++G Y VF VT G P ++K L Q+ + + + ++ Sbjct: 586 PTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRK 644 Query: 613 QYSVTVHDNLI 623 ++ VT+H + + Sbjct: 645 RFKVTIHKSQL 655 >gi|91788924|ref|YP_549876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] gi|91698149|gb|ABE44978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] Length = 643 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 124/646 (19%), Positives = 244/646 (37%), Gaps = 47/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + IRK ++ +A +FL ++ F+++GL S V V + + S + + Sbjct: 1 MFDFIRKHTKVTMALLFL-LIVPSFILFGLDGYNRSREQGVAVARVDGKDIIQSEWDRAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ + + ++++ S L+ LV + + L R+ E+ Sbjct: 60 QLEVDRLRASMPS-LDAKLLDSPQARYATLERLVRDRVIAAAADKFKLVISDQRLARELQ 118 Query: 121 R---SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + D + + L +G++ + + + LS V+ S+ Sbjct: 119 QSSEIASLRRSDGNLDMERYRQVLGSQGMSPEMFEANVRADLSNRQVLTGIGASGFSSSS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D A YFE R + N A P++A L Q+++ + ++APE I Y++ Sbjct: 179 AADLALNAYFEKREIQLARFNAADFAAKLSPTDADLDQFYKANEKLFQAPEQASIEYVML 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 DV K I I+ +L+ YE+N ++ E R ++ + +A+E Sbjct: 239 DVETVRKSITINEADLKTYYEQNLQRLSGAEERRASHILITSPKTASAEERQKAKAKAEE 298 Query: 286 AFQSLKKGKK-FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++KK F +A ++ G + S L F++ + D++FS+ KKGD + Sbjct: 299 LLAAVKKSPDTFADVARKNSQDPGSAPSGGDLDFFARGAMVKP-FEDAVFSM-KKGDISA 356 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT- 399 V+ FGY I +++IK SF+E+K ++ ++ +A +K E + + Sbjct: 357 VVESEFGYHIIRLTDIKAPKQRSFEEMKPELEADLKKQQAQKKFSEAAEAFTNGVYEQAG 416 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ R K+ D+ + + + L +FG D K +T + Sbjct: 417 SLKPVAERLKL---DIKTASNVTRQPSAGT-TGVLANPKFLNALFGPDAVEKKRNTEAIE 472 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + +I + PAR + EV V++ W ++AEE KEG Sbjct: 473 VAPSQLVSGRILQYTPARTQPFAEVKDIVRQRWLAQRSAEEAR-----------KEGLAK 521 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 K AS + + + + I + F + Y + K Sbjct: 522 LVAWKAAPASAVLAAPVLVSREQTQNLPVQVIDAALRVDASALPVFAGVDLGAQGYAIVK 581 Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 V P + + Q + LK ++ + Sbjct: 582 VAKVMPRDARPDAAAKQERNQYAQWWTSAENLAYYNGLKERFKAEI 627 >gi|303251064|ref|ZP_07337250.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252639|ref|ZP_07534532.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650074|gb|EFL80244.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859884|gb|EFM91904.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 625 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLMVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRSAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410 V K + ++VK I +R + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|167586935|ref|ZP_02379323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ubonensis Bu] Length = 644 Score = 351 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 104/658 (15%), Positives = 239/658 (36%), Gaps = 45/658 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R +A + L+VL G+ S+ V +V K+ F ++ Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGTY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G + + + K++LD L+ L + + L A V + Sbjct: 60 RQQIDRARQALGAQFDLKSFDTPEHRKEVLDGLIQQRVLADETQRLHLTASDNAVREALL 119 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P+ D + + L+ +G+ ++Y + L+ + V Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + R V +VL + P++A L +++ K ++ PE I Y+++ Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAQKQSFATPETATIQYLVY 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 + ++ +++ Y+ N + + V + + +A++ Sbjct: 240 SPAAAAANAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAAGDASAADKAAAKAKAEQ 299 Query: 286 AFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFT 339 +K F Q+A++ + LG ++ + D+ F+L K+GD + Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFAL-KQGDVS 358 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I + +KP+ F EVK IA +++ AS+ ++ + + Sbjct: 359 GVVQSDLGFHILKATEVKPAAVKPFAEVKDAIAVELKQQYASKAFSDNAEGFTSTVYEKA 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ + + + L VF D S+++T + Sbjct: 419 KSLQPAADKYKL---TIQTATVTPTPNPALPPTSPLNNAKFLAAVFATDSVKSRNNTQAI 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + ++ + PA L+ + V++ + AE + E K Sbjct: 476 DIGNNTLISARVTDYKPAAVPALDAIKDAVRQKVIAEQAAELAKKDGAAKLAELQK---- 531 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 A ++R + +S ++ + + + + Y ++ Sbjct: 532 -----SKATAGFAAAATLSR--TQAHGLTPAALSAIYKVDAKALPAYVGVDLGADGYAIY 584 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQYSVTVHDNLIQRYLDG 629 +V G + + + QM D ++ +A L+ + V ++ + DG Sbjct: 585 RVNAVIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGSTANAAQDG 642 >gi|77918655|ref|YP_356470.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM 2380] gi|77544738|gb|ABA88300.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM 2380] Length = 649 Score = 351 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 117/662 (17%), Positives = 250/662 (37%), Gaps = 46/662 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSF 56 ML++IRK R+ + KI + F+ S S + V + + F Sbjct: 1 MLDLIRKKQRSVLVKIVFWTIIAAFVGTIFLVWGKGNSGSGGDGSAIAHVNGDAISYQDF 60 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ + ++ G + E + + L+ + + LV+ L Q ++ + D + Sbjct: 61 QITYQNMRQEMEKRFGRSLPPEIEKQLQLNTQAYEQLVNRLLLLQEADNRDIAVDKDELR 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 IA P F KD +F + LA + + + + + + L VV ++ Sbjct: 121 QAIADIPAFQ-KDGQFDRKRYQEVLAYQHLTSRAFERNMREQLLLGKVVEAIKQDAEVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R E + ++ L + ++ L +F++ ++++R PE + ++ Sbjct: 180 QDIDHEYRNRNEKIDLAFVKLAPGRYESKVTVTDEALQAYFQENREDFRQPEKIALRFVR 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284 FD K I + + +Q Y+K+K++Y+ E ++F + A Sbjct: 240 FDPDNVAKDISVDDAAIQDYYDKHKDQYWVEEQVKASHILFRITAGLDEDGRQKKRAAAQ 299 Query: 285 EAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + + + GK F QLA + G ++ +LG F+ + + F+L K G + Sbjct: 300 KVLEQARAGKDFAQLARTHSDDAGSAIKGGALGYFTHGSMV-PDFENVAFAL-KPGQISD 357 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 ++ S GY I + T +V+ D+ +R A + + Sbjct: 358 LVETSMGYHIIKCEGRIEAQTKPLDDVRDDVRANLRKELARQDALDKAMMAYSAHRQDGD 417 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 +D + + V G +G+ + + ++L F + V D Sbjct: 418 IDAAASANGL------QVRETGLFSRGEAIDGLGSDDELSMAAFALKEGELARPIVR--D 469 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + +KE + +L+E +V++ ++ ++ A ++ E K GK D+ Sbjct: 470 QGVLTFVVKERHASYIPELKEARAEVERAYRRQESVGLARQAAEAVLAEL-KAGKKLADV 528 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-EMVKCFPIENGL-----SYVVF 574 + + T R + F G S+ + + K P+ + + +VV Sbjct: 529 ARKEKVEMGETGLFPR--SYGNFIPRIGSSEALATAGFALTKEAPVADEVYVIDGRFVVA 586 Query: 575 KVTNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 + + +++ + + + LL ++ LKS+ + V L Q L+G Sbjct: 587 TLMHRMEADPAKLTDAAREQLRTSVLTNKREKLLTELVEKLKSEAKIKVEPTL-QNILEG 645 Query: 630 EK 631 EK Sbjct: 646 EK 647 >gi|239814796|ref|YP_002943706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] gi|239801373|gb|ACS18440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] Length = 636 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 102/646 (15%), Positives = 230/646 (35%), Gaps = 51/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + RK ++ + +FL ++ F+++G+ G V V Q + + Sbjct: 1 MFDFFRKYNKIVMIFLFL-LIIPSFVLFGVERY-QGSGGEVKVARVDGQNITRPEWDAQH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I Q+ V+ S + L+ +V L + R+ A Sbjct: 59 RLETDRIRQQSP-NVDPTLLESDVMRYATLERMVRDRVLAAAAAKSNVTISEERLSRIFA 117 Query: 121 RS---PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + F D KF + F G ++Y L+ ++ G Sbjct: 118 QDTGLAAFRTPDGKFDRESFQRV---TGRTPEQYEASMRAELATQQMLLGVTGTAFTPPA 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L +++ R + + + S+A + +++ + ++APE I Y++ Sbjct: 175 LAAATINAFYDRREIQVARFSPESFASKVTVSDADVEAYYKAHTAQFQAPEQASIEYLVL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285 D+ +K I ++ +L+ YE+N ++ + E R ++ +A++ Sbjct: 235 DLEAAKKNISVNEADLKTYYEQNTARFGTKEERRASHILITAPASAPAADRAKAKAKAEQ 294 Query: 286 AFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +KK F +A ++ G + L ++ + D++F+L KKGD + Sbjct: 295 LLAEVKKAPATFADVARKNSQDPGSAEKGGDLDFVTRGAMVKP-FEDALFAL-KKGDISD 352 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGT 399 V+ FGY I +++IKP+ F++V+ I N++R +A+++ + + + + Sbjct: 353 VVETEFGYHIIRLADIKPAVVPPFEQVRATIENEVRSQQATQEFAKAAETFTDAVYQQPD 412 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVA 457 S+ + + ++ V A + L +F D D + Sbjct: 413 SLKPAAEKLRLTIQTASNVSRTP----PPGAAGVLANRNFLNALFAADSLDRKQNTEAIE 468 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + ++ + PA L EV ++ T + A ++ + ++ Sbjct: 469 VGSNQLAAGRVTQYTPAHPMPLAEVKDKIRAQLITERAAVMAKAEGEAKLAAWT------ 522 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 K GA+ ++R + + + I + + Y V + Sbjct: 523 ---AKADGATFGAPVTVSRREAQAQPL--AVIDAALRADASKLPALVGVDLGTQGYAVVR 577 Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 VT ++ + + + Q + + LK ++ + Sbjct: 578 VTKVVPRTPSAPEQTQQENAQVGQSVAAAEEVAYYNLLKERFKAEI 623 >gi|303253594|ref|ZP_07339732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245913|ref|ZP_07527996.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247999|ref|ZP_07530028.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254886|ref|ZP_07536708.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257049|ref|ZP_07538824.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259327|ref|ZP_07541054.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302647514|gb|EFL77732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853132|gb|EFM85354.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855397|gb|EFM87571.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862127|gb|EFM94099.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864420|gb|EFM96328.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866563|gb|EFM98424.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 625 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 110/644 (17%), Positives = 243/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410 V K + ++VK I +R + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|254521282|ref|ZP_05133337.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14] gi|219718873|gb|EED37398.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14] Length = 651 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 109/659 (16%), Positives = 222/659 (33%), Gaps = 48/659 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46 ML+ +R + W+ + L +L +PFL + ++ G+ V V Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59 Query: 47 ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++QE Q+ G + S +LD L+ + Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158 E G+ G V IA P F + KF+ + + LA ++ + + Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ L A ++A + QW++ Sbjct: 180 LQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYD 238 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R E + Y+ + L+ YE K K+ SPE R ++ Sbjct: 239 SHGKDFRQAESVSLEYVEINGGTLPAPAAADEATLRKRYEDEKAKFTSPEQRQAAHILIT 298 Query: 279 NQKEADEAFQSLKKGKKFIQL--------AEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 +A + + K +E+ G LG + + D++F Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKAQGGDLGWVERGAMVKP-FEDALF 357 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + AK GD + FGY I V+ ++ SF+EV+ +A + E R Sbjct: 358 A-AKAGDVIGPVKTDFGYHIIKVAAVRGGQGKSFEEVRDTLAAEQLKADGERGFNELAGR 416 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 L + + S +++ K V + L + + A V +D Sbjct: 417 LVDAI--NKSPSDLAAAAKEVKLPLQTLGPITRATASGIAADPAVLRAAFSDVLVQDGTA 474 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 S + + +++ P + L++ V + + + S KA VL Sbjct: 475 SDPIALGGASNHSVVIRVSAHTPEQAMPLDKAREQVIAAIRADR-QRQASDKAADAVLAK 533 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIEN 567 K G + + + L + R D +FS P + ++ Sbjct: 534 LKGGATLQSLAASEKLQLSPMPGLPRS---QPVPTPDIHRAIFSAPAPVNGKPSYGKVDV 590 Query: 568 GLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 ++F V G +++ + L+Q+ + + ++ ++ V + Sbjct: 591 NGHALLFAVNKINPGDIKEVTAEQQKQLKDQLSQIDGMAAAKAYVEAMRKKFVVQTTEA 649 >gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus EPS] gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus EPS] Length = 638 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 109/646 (16%), Positives = 239/646 (36%), Gaps = 51/646 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + RK ++ + +FL ++ F+++G+ V + + + Sbjct: 1 MFDFFRKYNKIVMIFLFL-LIIPSFVLFGVERY-QGSGRDEKVAHIEGGDITKPEWDAQH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I Q+ V+ S L L+ +V L + R+ A Sbjct: 59 RIETDRIRQQSP-NVDPTVLDSDALRYATLERMVRDRVLAAAAAKANMTVSEDRLSRIFA 117 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P F D KF + F L G ++Y +S V+ G Sbjct: 118 QDPGLASFRTPDGKFDRETF---LRVTGRTPEQYEAQVRADMSTQQVLLGVSGTALTPPA 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+ +++ R + + S+A + +++ + ++APE I Y++ Sbjct: 175 LVAATVNAFYDRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 D+ +K + ++ +L+ YE+N ++ + E R ++ + +A++ Sbjct: 235 DLDAAKKNVVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAADREKAKAKAEQ 294 Query: 286 AFQSLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +KK F +A ++ G + L +K + D++F+L KKG+ + Sbjct: 295 LLAEVKKAPNTFADVARKNSQDPGSAEKGGDLDFVTKGAMVKP-FEDAMFAL-KKGEISG 352 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGT 399 V+ FGY I H+ +IKP+ F++V+ I +++R +A+++ + + + + Sbjct: 353 VVETEFGYHIIHLVDIKPAVVPPFEQVRATIESEVRAAQAAQEFAKAAEVFTDAVYQQPD 412 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ + + K+ V +A L ++ D K +T A+ Sbjct: 413 SLKPAAEKLKLTIQTATNVPRTPAPGAKGPLA----SRNFLSALYASDSLERKQNTEAIE 468 Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 GS ++ + PA L EV ++ T + A ++ + ++ Sbjct: 469 VGSSQLASGRVTQYTPAHPIPLAEVKDKIRAQLVTERAAVLAKTEGEAKLAAWT------ 522 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 K GA+ ++R+D +++ I + + Y V + Sbjct: 523 ---AKADGATFAAPVTVSRIDAQSQPMP--VIDAALRANAAKLPSLVGVDLGAQGYAVVR 577 Query: 576 VTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 VT P ++ + + + Q + D+ LK ++ + Sbjct: 578 VTKVVPRTPPPPEQAQQESAQVGQSVTAAEADAYYKLLKERFKAEI 623 >gi|190573026|ref|YP_001970871.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia K279a] gi|190010948|emb|CAQ44557.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia K279a] Length = 651 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 107/659 (16%), Positives = 225/659 (34%), Gaps = 48/659 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46 ML+ +R + W+ + L +L +PFL + ++ G+ V V Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59 Query: 47 ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++ F ++QE Q+ G + S +LD L+ + Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158 E G+ G V IA P F + KF+ + + LA ++ + + Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ + + ++ + E R V+ L A ++A + QW++ Sbjct: 180 LQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVP-ADTAPVTDAQIKQWYD 238 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++R E + Y+ + L+ YE K K+ +PE R ++ Sbjct: 239 SHGKDFRQAESVSLEYVEINGANLPAPTAADEATLRKRYEDEKAKFTTPEQRQASHILIT 298 Query: 279 NQKEADEAFQSLKKGKKFIQL--------AEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 +A + + K +E+ G LG + + D++F Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKGQGGDLGWVERGAMVKP-FEDALF 357 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + AK GD + FGY I V+ ++ SF+EV+ +A + E R Sbjct: 358 A-AKAGDVIGPVKTEFGYHIIKVAAVRGGQGKSFEEVRDTLAAEQLKADGERGFNELAGR 416 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 L + + S +++ K V++ L + + A V +D Sbjct: 417 LVDAI--NKSPSDLAAAAKEVNLPLQTLGPITRATASGIAADPGVLRAAFSDVLVQDGTA 474 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 S + + +++ P + L++ V + + + S KA VL Sbjct: 475 SDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAIRADR-QRQASDKAADAVLAK 533 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV--EMVKCF-PIEN 567 K G + + + L + R + +FS PV + + ++ Sbjct: 534 LKAGATLQSLAASEKLQLSPMPGLPRS---QPVPTPEINRAIFSAPVPADGKPSYGKVDV 590 Query: 568 GLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 ++F V G +++ + L+Q+ + + ++ ++ + + Sbjct: 591 NGHALLFAVNKVNPGDVKEVTAEQQKQLKDQLSQIDGMAAAKAYVEAMRKKFVIQTTEA 649 >gi|194289547|ref|YP_002005454.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG 19424] gi|193223382|emb|CAQ69387.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Cupriavidus taiwanensis LMG 19424] Length = 644 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 109/642 (16%), Positives = 232/642 (36%), Gaps = 35/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R R + + V++F F+ +G+ + S V + + N Sbjct: 1 MLDFVRNNRRLMLLLLL-VLVFPSFVFFGVESYSRFMDSSHDAAKVDGRAISVQEVDNVV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q +G + + K +L+ L+ + + L ++ EI+ Sbjct: 60 RDQSERARQILGANYDPRQFEGPEARKAVLEQLIQQRVMANAVASEHLTVSDAKLLEEIS 119 Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P GKD K ++ L +G+ +++ L+ + Sbjct: 120 SLPAIAQLPRGKDGKIDDKAYLQLLQSQGMTPEQFDARMRFELAMQQLGASVAATAFVPK 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L+++ + R V ++ A P A L +++ ++ ++ PE ++ Y++ Sbjct: 180 SLIERLMAARDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQDFSVPEQAKVEYLV 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-- 294 ++ +EL++ YE N ++ E R ++ K+A A + K K Sbjct: 240 LSGEALAASQAVTPEELKSYYESNIARFRVDEQRRASHILISAPKDAPAAQRQAAKDKAT 299 Query: 295 -----------KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 F +A ++ G + LG + + D++++L K+G + Sbjct: 300 KLLEEVRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKP-FEDAMYAL-KEGQIS 357 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ FGY I ++ KP+ T + V+ ++ ++R A +K E + Sbjct: 358 DVVETDFGYHIIKLTGTKPAETRPLEAVRTELEAELRKQFADKKFAEQADAFGNTVYEQA 417 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ V G + + E+LL +F D +K +T V Sbjct: 418 DSLKPAADKFKLTIQTADKVTRQPNPALGAQ--SPLNNEKLLKALFSDDAIKNKRNTEAV 475 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + +I PA RK EEV V++ + + A ++ K + L K+ + Sbjct: 476 QVAPNTLVAARIVAYRPATVRKFEEVEAQVREGYIAQQAA-ALARKDGEARLAALKQADS 534 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576 G S + + E P + + Y + KV Sbjct: 535 AEGFGPVQTVSRTKADGMTPQAVEAVMRADAA-----KLPALVGVDLGAQGYAVYRITKV 589 Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + ++ L Q+ + L + LK++ V + Sbjct: 590 SQPAQANPAQRQAAAQQLAQLAGQSDLQAFYESLKARAKVKM 631 >gi|254360504|ref|ZP_04976653.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213] gi|153091044|gb|EDN73049.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213] Length = 623 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 244/641 (38%), Gaps = 38/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L S S V V +++ F N+ Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNS--VAKVNGEEISQQLFNNTL 58 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +E ++ ++G + ++ +L+ L+ L Q+ +++ L ++ Sbjct: 59 NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI S +F +D KFS++++ L ++ Y + + ++ + + Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V + S L ++E K APE + Y+ Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEYVTL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + E K+EI+N+++Q Y++NK Y + + + ++ EA Q+LK G+ F Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + + LG P + D++ +L G + + Y I V Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPK-AFEDAVANLT-AGQMSAAVKVDNAYHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVS 412 KP + +VK IA +R + + + + +S++E+++ + Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVAREMANKAFENNSSLEEVAKAGNVEL 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----SYMWVQ 467 L + V E++L +F + +K ++ AL G ++V+ Sbjct: 416 QKTDLFTR-------ENVPTALQNEKVLKVLFEGELRQNKQNSDALDVGNDANPQTLFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + R + +E V+ K K + + +K + V ++ GK++ Sbjct: 469 VSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNE--------GKSVDVK 520 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584 + M E + G +F+ K V+ + N G Sbjct: 521 FNAPQTLVYMQAEVENPVLAGT--IFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNA 578 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ Q L + + L+++ S+ V+++ +Q+ Sbjct: 579 EQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619 >gi|296135612|ref|YP_003642854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] gi|295795734|gb|ADG30524.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] Length = 640 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 112/645 (17%), Positives = 230/645 (35%), Gaps = 44/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IRK S+ + + V++F F+++G+ + VG Q + + Sbjct: 1 MLESIRKHSK-LMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ + +G V+ ++ + + LD ++ L LE +V I Sbjct: 60 RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D F + S +A +G+N ++ + L V+ G + S Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L A + + R V + A + + +++ ++ PE I Y++ Sbjct: 180 LATAAAKAAAQQREVRLALFKPADYTAQVQVTPQEIETFYKNNTARFQKPESADIQYVVL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 E I+++ ++ +A Y+ N K+ +P R ++ +A A Q K Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPADATAAQQEQAKARAEA 299 Query: 294 ---------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +F LA ++ G + LG F+ + + AD++F + K G+ Sbjct: 300 IAKQVKANPAEFAALARKDSQDPGSAEKGGDLGYFTADSMVKP-FADAVFGMQKIGEIVG 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 I FGY I ++ IKP F VK I Q++ A +++ D + + Sbjct: 359 PIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSADVEAFTNAVFEHPD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVA 457 S + + + V + V+ + + L +F + +K + + Sbjct: 419 SFQAVEDKLHLKVQSASNVTRTPQPAAPDAVSPL-SSKAFLDALFAESSLRNKHNLQAIQ 477 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + ++ PA+ L +V T ++ K AE Q Sbjct: 478 IAPNVWASARVLSFSPAQTLPLAQVQTQARQKLVDQKAAELARKAGEQ------------ 525 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 + + IN + + +S+ F + + Y V + Sbjct: 526 -ALKSPATLTFGAPQMIN-LTQPSPGVSPLIVSKAFGLSASKLPATAGVDLGAQGYAVLQ 583 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + G P Q + Q + + ++++ I LK ++ V + Sbjct: 584 LDKVIEGEAPAQLISAAANAEQQALTQGVMNAYIEALKKRFGVEI 628 >gi|332141514|ref|YP_004427252.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327551536|gb|AEA98254.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 565 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 104/574 (18%), Positives = 222/574 (38%), Gaps = 27/574 (4%) Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + I + +SE+ K +LD L++ + Q ++GL ++ I + P Sbjct: 3 SQYGESIAQLFSSEQ-YLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRETIVQMPE 61 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F +F ++ F + L + G ++ D+ +++ + + ++QA Sbjct: 62 FQF-GGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDGEVEQANA 120 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + R+ Y+++++ + ++A + ++ ++ E +++Y+ V + + Sbjct: 121 LQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKLSVEDLKG 180 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLKKGKKFI 297 ++ + D ++ Y+ N Y + E R V ++ + +A+ + G F Sbjct: 181 RVSVDEDSVRTYYDNNLGSYGTEEQRRVSHILIEAGDDTDAAKAKAESLKAEIDSGADFA 240 Query: 298 QLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LAE G F + D + ++ FSL GD + V+ FGY I ++ Sbjct: 241 ALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFGYHIIKLT 300 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSI 413 +K + SF EV +I + + A EK E L E ++D+ + + Sbjct: 301 EVKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAANAVDLP-- 358 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + ++ E+++ P + F ++ L+ D + L D + + ++ E P Sbjct: 359 -IQESVLFSRNTAPAELSS-PGLLDVAFSSELVEEGLNSD-IIELDDETVVVARVVEHQP 415 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 R + L+EV ++ K K+ E S A V + + G++ D T Sbjct: 416 QRTQSLDEVREGIEASVKAEKSKEAAESWAFD-VAQKVRAGESVEDELAAKSVEWETAAN 474 Query: 534 INRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVF--KVTNSKVGPVQEKD 588 + R + +FS +E V NG VV V + + + Sbjct: 475 VQRA---GGTLARALVDTLFSLALEGDDQVDVATTVNGDVAVVMLEGVNPAPALESELGE 531 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 L Q+ + + I L++ VT+ + L Sbjct: 532 SLKQRLAQVQGQRVYQQYIDALRANAEVTISEAL 565 >gi|319943847|ref|ZP_08018128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] gi|319743080|gb|EFV95486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] Length = 649 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 118/644 (18%), Positives = 241/644 (37%), Gaps = 37/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R + + LV++ F+ +G+S +V SV + VP + F ++ Sbjct: 1 MFDFVRTH-QRLAQGLLLVLIMPAFVFFGISGYDRMFGDGDSVASVDGEPVPRAYFEQTY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ + Q +G ++ + ++L+NL++ L + G + I Sbjct: 60 RQQVQQMQQMMGDNYDAAVFDNQATRMEVLENLITRQALLADARRARITVTPGEIQKAIL 119 Query: 121 RSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + KF + + LA G+ +Y +ML+ V ++ Sbjct: 120 DQHADLRDANGKFDIEGYKRLLAANGLTPAQYEAQMGQMLAVGAVERAVADSAMVPQTVV 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF-D 238 D R V +++ R P++ L +++ + + PE ISY+ Sbjct: 180 DGVFASQENRRVVRTLLVTPRDYEKGLAPTDEQLKAYYDAHASAFDLPESVDISYVALRR 239 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292 K +E S EL+A Y+K++ ++ E R ++ + AD A + K Sbjct: 240 TDMLPKDVEPSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADAAAKEKVKARAEAL 299 Query: 293 -------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 KF +LA++ + LG F ++ + AD+ F L K G FT V Sbjct: 300 LAEAKAHPDKFAELAKKNSEDPGSAEQGGDLGFFERDTMVKP-FADAAFGLDKPG-FTDV 357 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-S 400 + +G+ + V+ +K EVK + R +A+ + + + L + S Sbjct: 358 VETEYGFHVIQVTGVKGGGEKPLAEVKPQLVKMWREEEAARRYNQAAEALSNMVYEQAES 417 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHT--VA 457 + + R K+ ++ G+ P LL +++ D K +T + Sbjct: 418 LKPAAERFKL---NIEQAKGVGRKPAANAPEGSPLANARLLEQLYAPDALEEKRNTTAIE 474 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + G + ++ P R + L+EV V++ W + A + + E +E Sbjct: 475 VSPGVLVSARVDAHHPQRRQTLDEVKDTVRQRWIADEAARLAREAGEKRLAEL-REAAGA 533 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 +D L + L N I+R ++ + F + + + + Y + Sbjct: 534 KDAKAALPSGLSEENTISR--SQPGRLQQPALKAAFGVSADQLPAWVGADLGKDGYQLIH 591 Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 V + + D + + L Q+M + + LKS + Sbjct: 592 VEKALPPDEAARQRLDTYRTQLRQLMANAERQAWVDTLKSTLKI 635 >gi|301154695|emb|CBW14158.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus parainfluenzae T3T1] Length = 625 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 113/639 (17%), Positives = 240/639 (37%), Gaps = 37/639 (5%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML E + + +++ K +L V FLI G+S L+ S V + + F+N Sbjct: 1 MLIEKMHGVAHSFIGKAIFALLPVSFLIGGMSGYLYG-GNESFAAKVNGETISQQDFLNR 59 Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + QE +Q+ G L + ++ LV + Q+ +++ L + Sbjct: 60 YNQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDDMIK 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P + KF + + L + G+ Y L+ + Sbjct: 120 RAIVSDPNLQS-NGKFDNARYQQLLTQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVP 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + +F+ R L A + + +++ + PE ++ YI Sbjct: 179 AQVKDSAQTFFQKRIARLATLPLADEVAKQKVTEEEIKAYYDANAKSLVQPEQAKVQYIR 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 +E K ++ ++ Y++NK ++ S + + +KEAD +Q L+KG F Sbjct: 239 VSANELGKLQPVTETQIAQYYQENKAQFISQ---KLAHIQLATEKEADAVYQELQKGADF 295 Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA+ + LG +P + D+ L G ++ ++ Y I Sbjct: 296 AELAKAKSVDKLSGAQGGELGWVKDNELPK-NFEDAAL-LLNVGQYSTPVNVDGAYHIIL 353 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V + K + EVK+ IA+ +R A + + K + A S D ++ + Sbjct: 354 VQDRKE---RTLDEVKEQIADSVRKNLAGSRFQAVEKAVRAKAAE--SSDSLAAVAEAAG 408 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKE 470 + + D+ GK+ V A + +F D + + + + + ++ V++ + Sbjct: 409 VKVEETDYFGKN----NVPAALNFPNVTSAIFESDIANGGANSEPLTVGENEFVVVRVVD 464 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 + L+E + +++ K K + ++ KA Q V S + G S Sbjct: 465 HKAEGLQSLDEAKSTIEQFLKREKADKVLTEKAEQAVKALSADPTKL-----PAGISFGE 519 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGPVQE 586 MDN++ Y+G+ + + P + + + + V + QE Sbjct: 520 PQTFTLMDNKDPVL-YEGVFAI-AKPQDGKAAYQVARNSKGDVVVVALERVEEPTLSEQE 577 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 KF + L + +L ++ L+ + + ++ + I + Sbjct: 578 LAKFSTQLVRARQGELQGQLMQALREKAQIEINTSFINQ 616 >gi|261496293|ref|ZP_05992697.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308055|gb|EEY09354.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 623 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 244/641 (38%), Gaps = 38/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L S S V V +++ F N+ Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNS--VAKVNGEEISQQLFNNTL 58 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +E ++ ++G + ++ +L+ L+ L Q+ +++ L ++ Sbjct: 59 NREQNRLNVELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI S +F +D KFS++++ L ++ Y + + ++ + + Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R V + S L ++E K APE + Y+ Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEYVTL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + E K+EI+N+++Q Y++NK Y + + + ++ EA Q+LK G+ F Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + + LG P + D++ +L G + + Y I V Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPK-AFEDAVANLT-AGQMSAAVKVDNAYHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVS 412 KP + +VK IA +R + + + + +S++E+++ + Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAFENNSSLEEVAKAGNVEL 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-----SYMWVQ 467 L + V E++L +F + +K ++ AL G ++V+ Sbjct: 416 QKTDLFTR-------ENVPTALQNEKVLKVLFEGELRQNKQNSDALDVGNDANPQTLFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + R + +E V+ K K + + +K + V ++ GK++ Sbjct: 469 VSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNE--------GKSVDVK 520 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584 + M E + G +F+ K V+ + N G Sbjct: 521 FNAPQTLVYMQAEVENPVLAGT--IFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNA 578 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ Q L + + L+++ S+ V+++ +Q+ Sbjct: 579 EQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619 >gi|302344093|ref|YP_003808622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] gi|301640706|gb|ADK86028.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] Length = 649 Score = 350 bits (897), Expect = 6e-94, Method: Composition-based stats. Identities = 114/638 (17%), Positives = 244/638 (38%), Gaps = 40/638 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 MLE++R+ + W+ KI L ++ + F + +GLS S G + V Q + + Sbjct: 1 MLELMRRQAGNWIIKIILGLIALAFALSFGLSPNFGSNPG--VAMKVNDQPIMEDAVSEL 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q+ G + + A + L ++ L +L+ L Q + +GL + + I Sbjct: 59 YGRMTEQARQQFGDNFD-KLAPMLNLRQQALYSLMDRLLLAQAAQRMGLGVSNRELASSI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F + KF ++ RLA + E+ + + L + + M G + + L + Sbjct: 118 QDMAAFQ-VEGKFDMRLYQQRLAANRLTEERFENSVRADLLQGKIAAMVGGSGQVTPLQV 176 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 DQA + Y+++ + + + +E +K Y P R+ Y+ V Sbjct: 177 DQALQEALSRADAVYLLVKPEDLLDSVKVGEDEIAEHYESHKGLYMNPATLRVDYVALPV 236 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AF 287 K +++ DE+ YE + +Y PE ++ EADE Sbjct: 237 SAFRDKADVAEDEIIDAYEMDWRQYSRPEEVRARHILIELAPEADEAQKAKAKAQALALL 296 Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + + G+ F ++A+E K S LG F + + + +F + G V+ Sbjct: 297 EKARAGEDFAKMAKEYSKGPSADKGGDLGYFQRGQMVGP-FDELVFKMT-PGQI-EVVET 353 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + + K + V +E + +I ++ +A + + + L + LA G ++ Sbjct: 354 EFGWHVVKLEDKKKARIVPLEEARGEIKARLAEQQAKDLAMQAAEGLFDALAAGQPLEAA 413 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 ++ K+V P V + V + + L G + DG + Sbjct: 414 AKERKLVVEQPPAV------TADQPVPGLTGLKDLFAAAQGLEAGQPLRPM--TFDGGAV 465 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 I++ + + L++V V+ ++ K + +A +++ + + + K Sbjct: 466 VAVIRQRTAPQPKPLDKVREQVEMAVRSEKANQLAQVQAKEIIAKLNAAKDPAAALSKLG 525 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKVTNSKVG 582 G T + + G + + Q + V P+ + V VT + Sbjct: 526 G---KPTGPLTSSEPIEGLPGSEQLQQAIHALAQDKTVLAQPVPVAGGFAVAVVTKRQPP 582 Query: 583 PVQEKDKFISYLTQMMNKDLLDS----VIAYLKSQYSV 616 D+ +TQ + + + + +A L++ + Sbjct: 583 EPGAMDQMREGMTQQLRRTMQNQTYQRFLADLRNNADI 620 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 49/158 (31%), Gaps = 1/158 (0%) Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + V++++ AR LEE ++K + A++++ +A + + + G+ Sbjct: 356 GWHVVKLEDKKKARIVPLEEARGEIKARL-AEQQAKDLAMQAAEGLFDALAAGQPLEAAA 414 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 K + + G + G P+ VV + Sbjct: 415 KERKLVVEQPPAVTADQPVPGLTGLKDLFAAAQGLEAGQPLRPMTFDGGAVVAVIRQRTA 474 Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + DK + + + + + + ++ Sbjct: 475 PQPKPLDKVREQVEMAVRSEKANQLAQVQAKEIIAKLN 512 >gi|120610416|ref|YP_970094.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120588880|gb|ABM32320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 642 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 103/616 (16%), Positives = 225/616 (36%), Gaps = 40/616 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ V + +++ F++ G+ F S S+ V V + + N+ Sbjct: 1 MFESIRKHSK-VVMIVLFLLIIPSFVLVGIDRNYF-TSKSAVVARVDGHDITQDDWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I + V++ S L+ LV + + L ++ + Sbjct: 59 RMETDRIRAQSPS-VDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQ 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + + +G+ + + + + LS + V+G +G Sbjct: 118 GIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFESNVRRELSLSQVMGGVLGSAFAGQE 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A ++ R + + + A P++ L +++ ++ +R PE+ + Y++ Sbjct: 178 PARLALDALYQRREIQVARFDAKDFAAKVAPTDDELQSYYKAHEAQFRQPEHADVQYVVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------- 290 D+ I +S D+L++ Y++N E+ E R ++ K+A A + Sbjct: 238 DLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKARARAQA 297 Query: 291 ------KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 K F ++A ++ G + S LG F + + D+ FS+ KKGD + Sbjct: 298 LLEQVRKAPGTFAEVARKNSQDTGSAPSGGDLGFFKRGDMVKP-FEDAAFSM-KKGDISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 ++ +GY I ++++K +F+EV+ + + + +A K E + + Sbjct: 356 LVESEYGYHIIQLNDVKTPRQPTFEEVRAKLETEAKQQQAQRKFAELAEVFSNTVYEQAD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ ++ + K+ V +A + L +F D +K +T + Sbjct: 416 SLQPVADKLKLKVQTASGVARTPLPGAQGPLA----NGRFLEALFAADSVQNKRNTEAIE 471 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + ++ PA ++V V++ + ++AE + + + + Sbjct: 472 TAPSTLVAGRVAAYTPASTPAFDQVKARVRELFVADRSAELARKEGEARLAAWKAAPASA 531 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 +G + S R + F+G + Y V KVT Sbjct: 532 TGLGNLVTISRDKPEGQPRPVVDAALQVNADTLPAFAGTPLGAQ--------GYAVVKVT 583 Query: 578 NSKVGPVQEKDKFISY 593 + Sbjct: 584 RIVPRDPSDPAVARQQ 599 >gi|118594828|ref|ZP_01552175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales bacterium HTCC2181] gi|118440606|gb|EAV47233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales bacterium HTCC2181] Length = 627 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 106/647 (16%), Positives = 250/647 (38%), Gaps = 48/647 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ + +AK+ L ++ +PF ++G+ L SV + + V + + N+ Sbjct: 1 MLDKIRNSTDSKLAKVILAIIIIPFALFGIDSYLSSVGSNVYIAKVNGVDISAQQYQNT- 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E + Q + S K +LDNL+S ++Q I+ G + ++ I Sbjct: 60 --EAMIREQMTDPNTDPALFDSPEFKKAVLDNLISTELMNQSIDKNGFVISNEQLSSYIV 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ KFS + + + + K+ D ++ + N + Sbjct: 118 GMPDFQ-ENGKFSQERYDQIVQYNNLTPKKLEDRIRTQMATQQAKDSINRLIYVPNEITQ 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ R + + P++ + Q++++ N+ P+ +I ++++ V Sbjct: 177 PLVNLAYQKRDISLHEIRLDDYKKKIKPTDDEVKQFYDENTSNFIMPDRVKIEFLIYSVA 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQ 288 I +SN+E + ++ NK K+ + + R + ++F Q A Sbjct: 237 GIVPTISVSNEEARQFFDANKGKFEANQQRRAKHILFAYQPGIDFEEKARIRDLAQTTLN 296 Query: 289 SLKKGKK-FI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +KK K F +L+++ + LG FS+ + AD++F L G + ++ Sbjct: 297 EIKKSPKIFENKVKELSQDTESAKQGGDLGFFSRGDMVKP-FADAVFGLKVDG-LSGLVE 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FG I +++IK SF ++K I ++ KA ++ + + + + D+ Sbjct: 355 TEFGLHIIKLTDIKGEQV-SFDKIKTQIKGELLYGKALDQYATNAENFNNTVYENS--DD 411 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461 +S + +++ + D + + +F + SK +T + + Sbjct: 412 LSVVAQKFGLEVQQSQWLSLD----DAKRFFNNDAFANEIFSSESIESKTNTLAIEVSPN 467 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + + ++ + P+ + L ++ V K+ E + N LV + Sbjct: 468 NLVSARVIDFSPSALQPLNDIKEQVVDLIIERKSQELIIEDGNMLVEDLK---------S 518 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579 K I+R+D + + ++F + + + + V K+ N Sbjct: 519 KKKKVEWFDELVIDRIDKQG--LSDQLVKKIFQIDTSELPAYSGFYDLKGEFFVIKINNV 576 Query: 580 KVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 V ++ D + + + + + I L++ + ++ ++ Sbjct: 577 VDEDVTDELSVDLYREEYEKALKGAIQAAYIDDLRADAKIKINPKVL 623 >gi|294677876|ref|YP_003578491.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB 1003] gi|294476696|gb|ADE86084.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB 1003] Length = 609 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 121/624 (19%), Positives = 248/624 (39%), Gaps = 29/624 (4%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R + ++ + L ++ + + + + + ++ +VG ++ + ++ +QE+ Sbjct: 2 LRSSGKSVTVWVLLAMIVLGLGGYQVGNF---SNRGQSIGAVGESEITARDYADALRQEI 58 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 ++ +IG + R++GLD+ + L + A L + + L V +I + Sbjct: 59 NAVAAQIGHPPSMSEVRAMGLDQVVQAQLFNTAALSEQARRLELSVGDAEVSRQIRSARP 118 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F G F + + L REG+ E E+ ++R+ + G GG+ LLD Sbjct: 119 FQGATGSFDRETYREVLRREGLTETEFETRLRADIARSILQGAVAGGVPAPAALLDGYVG 178 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + E R V + + + ++ P A L +++ + + PE + ISY+ + Sbjct: 179 YLGETRDVAFAEIPATGI-SLPAPDAAALKAYYDAHLAEFTRPETREISYVWLTPDMLKD 237 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQ 303 +I I +L+A Y++ K +Y PE R + +LVFP Q EA+ + G LAE + Sbjct: 238 EIAIDEAQLRATYDERKAEYVQPERRKLAKLVFPTQAEAEAGMAKIAAGTASLADLAEAR 297 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G S +DI LG S++ I + +++F+ G G + + PS T + Sbjct: 298 GLSAADIDLGDVSQDEIGGAA-GEAVFARTTPGVI-GPYETDLGPALFDFQAVTPSETTT 355 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 F+E + DIA ++ + KA + + LE+ LA G +++++ + K+ + + Sbjct: 356 FEEARGDIAAELAMEKARRMIADMTTDLEDRLASGATLEDMVKETKMQPGKISMAADT-- 413 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 +AA + +V +D P L DG +++ A +++ Sbjct: 414 ---RDGIAAYDAFREAAAKVTTEDFP----ELAVLEDGGVFALRLDGVTAAAPIPFDQLR 466 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 V+ W+T + + +KA G + T + R Sbjct: 467 DKVEASWRTAEMVKAKQAKAEAAGAAGQT--------LAAQGLAEKTAPDLQRGGFVEGA 518 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMN 599 F+ + + V + E + F + L QM+ Sbjct: 519 -PQGLAQTAFATAAGKSATLTEGDKVFVVTVRAVKPADPADPELVQLRKTFDTRLIQMLG 577 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLI 623 DL +++ +T+ +I Sbjct: 578 ADLAAFYARAAQAEAGITLDSAMI 601 >gi|295689570|ref|YP_003593263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis ATCC 21756] gi|295431473|gb|ADG10645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis ATCC 21756] Length = 653 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 125/642 (19%), Positives = 261/642 (40%), Gaps = 22/642 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML R +++ A + +L V F I+G+SD GS V+ G +++ F + Sbjct: 1 MLAGFRSFAKSPFAVLLFGLLIVSFAIFGISDVFKGPRGSG-VIDAGSREMSAQDFKLRF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 I ++ G + ++A G+DK+I+ L ++ I +G+ + + Sbjct: 60 DNYRKEIERRNGEPMTPDQAVERGVDKQIVQELALQESIAAAIAKMGVVPSDKLIAKTVH 119 Query: 121 RSPL--------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 F KF ++ + LA+ + + Y +++ G+ Sbjct: 120 EQMSSLPPGQRPFDPITGKFDSKLYAALLAQNNLTPQAYEASLRDEIAQAHFFSAVADGL 179 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + + + E R V +N V A P++A L + ++ D PE + + Sbjct: 180 KAPRIYAALQAAYGLEARDVAAFAVNPASVEKPAPPTDAQLMAFMKENADRLTRPETRVL 239 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 S + E + ++ E+Q ++ K+ PE R++ Q+V P+ K A Q L + Sbjct: 240 SIMRVSAKALEPTVTLNPAEVQKAFDFRKDSLAKPETRSLIQIVAPDAKTAATISQRLAR 299 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G+ +A+ GKS ++L K +PD +AD+ FSLA G + I+G G + Sbjct: 300 GEDPATVAKAYGKSP--VALIDKPKSALPDRKVADAAFSLA-VGQVSGPINGELGVSVVK 356 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V+ + P + V+ +I ++R A K + + ++ G + + + + Sbjct: 357 VTKVTPGVVATLDSVRPEIEAEVRAQTAQSKAYDQTQAYQDAHDAGADLVAAASKAGAMV 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + + G D G+ A + +++ FG D + L G Y V++++ + Sbjct: 417 VTTAPITAQGADQMGQPAAGL--TPEMIKTAFGLPQGGESD-LIELGKGEYYAVKVEKVV 473 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 PA L E+ + W + + + +KA+ L K+G++ + + +++ Sbjct: 474 PAAMPPLAEIKPQLTAVWMGQEMGKRLKAKADALAAR-VKKGESLEAVAASAQSNVQRVP 532 Query: 533 QINRMDNENKF-FGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 ++R + + G + F P E+ + G +YVV K+ P + ++ Sbjct: 533 GLSRQNAQQHMGLGPAFLGAAFDAKPNEVFTARAGQQGEAYVVAKLEAVHAAPTNDVARY 592 Query: 591 I----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + + +DL ++ A K+Q + L ++ + Sbjct: 593 AVLAQAQAANGLMRDLGEASRAAAKAQLKTKTNLTLARQAIG 634 >gi|32033981|ref|ZP_00134237.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208477|ref|YP_001053702.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae L20] gi|126097269|gb|ABN74097.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 625 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 109/644 (16%), Positives = 242/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSSIFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410 V K + ++VK I +R + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|126726381|ref|ZP_01742222.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium HTCC2150] gi|126704244|gb|EBA03336.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales bacterium HTCC2150] Length = 653 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 108/598 (18%), Positives = 252/598 (42%), Gaps = 27/598 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 + +V SVG ++V + + + EL +SQ+ G + E+AR+ G+ +L L+S Sbjct: 67 GGSTQSVASVGDREVGVNEYARAVNNELSRLSQQFGQQITLEQARAFGVVDNVLQQLLSQ 126 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 A +D + +G V +I P F +F + RL G++ KE+ ++ Sbjct: 127 AAVDNEVVRLGFSIGDEEVRKQILEIPAFQSLGGQFDKVNYEERLRSSGLSTKEFENNLR 186 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 +RT + G GG+ ++ D F + R+ ++ +L+ + ++A L + Sbjct: 187 IQTARTFLQGAVGGGVIGNSAYGDAVIDFLTQERNFEWALLDASALSEEVTATDADLQAY 246 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 +++ + PE ++I+Y + IE+ E+QA Y++ ++ PE R E+L Sbjct: 247 YDENPATFTLPESRQITYAVLLPETVAATIEVPASEIQAVYDERAAEFQKPERRLTERLA 306 Query: 277 FPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 F ++ A+ A L G+ +F L E+ +L D+ +G +++ + + + A+++F+ Sbjct: 307 FADEAAANAAKARLDSGEVRFADLLAERDLTLEDVDMGEVTRDDLYEET-ANALFADGFL 365 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + S G I V+ + ++V++DI +++ ++A ++ + +++ L Sbjct: 366 G-IAGPLPSSVGPAIFRVNGALAAIDTPLEDVQEDIRSELAQSRARREILDYITEVDDLL 424 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G +++E++ ++ + + +D +AA D P Sbjct: 425 AGGATLEEVAAETQMTLETTDITTESAED-----MAAYNEFRAAALSAQDGDFP----EI 475 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 L DG +++ P + +E V + + W +T +++ A++ Sbjct: 476 TELSDGGIFALRLDGITPPTLQDIEAVTDQLNEAWTYAETQIRLNTLADEKAA------- 528 Query: 516 NFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 + L + ++N R D + + F+ + + N + Sbjct: 529 SLEGDVLFADQGLRSIAEVNLRRDGTVAGTPPTTVFEAFNLELGQLTTIDGVN--EVYIV 586 Query: 575 KVTNSKVGPVQEKDKFISYL-----TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 ++ E+D+ +S + ++ D+ + +++ V+++ + L Sbjct: 587 RLNAINTDTQTEEDEGLSAIVANEVNGSLSNDIYAAFTNAVRADAGVSINTTAVNAVL 644 >gi|307261487|ref|ZP_07543156.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868770|gb|EFN00578.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 625 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 109/644 (16%), Positives = 242/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I G+ L V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGL--VGGDTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI S +F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSSVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410 V K + ++VK I +R + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|197105219|ref|YP_002130596.1| rotamase family protein [Phenylobacterium zucineum HLK1] gi|196478639|gb|ACG78167.1| rotamase family protein [Phenylobacterium zucineum HLK1] Length = 638 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 129/636 (20%), Positives = 273/636 (42%), Gaps = 16/636 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR+ +++WVA + + +L V F ++G++D +FS + V+ G + V + F + Sbjct: 1 MLAAIRQFAKSWVAAVLIGLLIVSFAVFGIND-VFSGATGDQVIKAGSRVVTSAEFRREY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q+ G + E A + G+D+++L+ L + + + IG+ + EI+ Sbjct: 60 EDYRKRLEQQAGQPITPEMAEANGIDRQVLNGLATREAFAEMLHKIGIRPSDKLLVAEIS 119 Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + P F +F + F RLA + + + ++ G+R Sbjct: 120 KIPAFFDPISGRFDRNTFQQRLAENDMTPEGFDRALRDQMAAQHWGAGVGEGLRAPRAYG 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 F E+R V + + +VPA+A P++ LT + ++ + PE + ++ + F Sbjct: 180 ALGAIFGLESRDVAWFNVTAANVPAVAAPTDEQLTAFMKENAEQLTRPEMRVLTVVRFTP 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + EL+ YE K+ + PE RT+ Q+ + A + L +G + Sbjct: 240 QAVPQNTPVDEAELKKLYEFRKDTFSRPETRTLVQIPAKDAAAAQQIQAGLARGDDPAAV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A+ G + I+ K + D +AD F L + G G G + V ++ P Sbjct: 300 AKAAGVDV--ITYEDKPKTALADRRVADVAFGL-QPGQVAR-AQGELGLAVVKVISVTPG 355 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 TV+ +E + + ++R A++KV E + +E G + +++ + ++ + V Sbjct: 356 QTVTLEEARPVLEAELRKNAAAQKVYEQAEAYDEAHRGGADLAAAAQQVGVPAMTVGPVT 415 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G D +G+ V + +L + F D T A +G V+++ +P L Sbjct: 416 RQGVDEQGRPVPGL--TPAILEQAFSLPAGGEGDLTDA-GEGESFAVKVERVVPPAMPPL 472 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV T++ + W +TA + ++AN+L E ++G++ + + + ++R Sbjct: 473 AEVRTELARVWSARETARRMEARANEL-AERVRKGESLEAVAASASLKVSRAEGLSRQTA 531 Query: 540 -ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----L 594 ++ + +++ F + V ++ V KV+N ++ P + Sbjct: 532 GQDPALSGELLNRAFGARPDDV-IVGRAREFAFSVAKVSNIRMQPGPTAAMLTEQQRGEM 590 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 T + +++ D+ + + V V N + + E Sbjct: 591 TNTLFREIADAAQRAARDKLKVRVDVNRARAAVGFE 626 >gi|222110395|ref|YP_002552659.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus TPSY] gi|221729839|gb|ACM32659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus TPSY] Length = 640 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 234/641 (36%), Gaps = 37/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ V + +++ F++ G+ FS GS V V + + + + N+ Sbjct: 1 MFESIRKHSK-IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I + ++++ S L+ LV L +D+ + R+ E+ Sbjct: 59 RMESDRIRAQSPG-IDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQ 117 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + +G+ + + LS V+G +G Sbjct: 118 SIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A F+ R + N + ++A L ++ + ++ E + Y++ Sbjct: 178 EARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 D+ + I +S D+L+ Y++N + E R ++ + +A+E Sbjct: 238 DLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEE 297 Query: 286 AFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F ++A+ + G + S LG F + + D++FS+ KKG+ + Sbjct: 298 LLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKP-FEDAVFSM-KKGEISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I +S+IK SF+E++ + +++ +A K E + + Sbjct: 356 VVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFAEVAEAFANGVYEQAD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ + K+ V +A + L +F D +K +T A+ Sbjct: 416 SLQPVADKLKLKIQTADGVTRTPAAGGAGPLA----NARFLEALFQSDSLQNKRNTEAIE 471 Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G+ + ++ PA L++ V+ + K+AE + + + K Sbjct: 472 IGTSVLAAGRVTAYQPAMTLPLDKARDQVRAIYIAEKSAELARQEGQAKLTAW----KAA 527 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 D L A+L T ++ D + V P + + +V Sbjct: 528 PDAASGLTAAL-TVSRDRLQDQPRSVVDAALRANVDQLPAWTGVDLGAQGYAVVKINRVV 586 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Q + LK ++ V + Sbjct: 587 PRDGVDDARARMEREQYLQSWASAEALAYYDLLKQRFKVQI 627 >gi|121594957|ref|YP_986853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] gi|120607037|gb|ABM42777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] Length = 640 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 234/641 (36%), Gaps = 37/641 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ V + +++ F++ G+ FS GS V V + + + + N+ Sbjct: 1 MFESIRKHSK-IVMFLLFLLIIPSFILVGIDSNYFS-GGSPVVARVDGKDITQADWDNAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I + ++++ S L+ LV L +D+ + R+ E+ Sbjct: 59 RMESDRIRAQSPG-IDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQ 117 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + + + +G+ + + LS V+G +G Sbjct: 118 SIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A F+ R + N + ++A L ++ + ++ E + Y++ Sbjct: 178 EARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADE 285 D+ + I +S D+L+ Y++N + E R ++ + +A+E Sbjct: 238 DLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEE 297 Query: 286 AFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F ++A+ + G + S LG F + + D++FS+ KKG+ + Sbjct: 298 LLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKP-FEDAVFSM-KKGEISD 355 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FG+ I +S+IK SF+E++ + +++ +A K E + + Sbjct: 356 VVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFAEVAEAFANGVYEQAD 415 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ + K+ V +A + L +F D +K +T A+ Sbjct: 416 SLQPVADKLKLKIQTAEGVTRTPAAGGAGPLA----NARFLEALFQSDSLQNKRNTEAIE 471 Query: 460 DGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G+ + ++ PA L++ V+ + K+AE + + + K Sbjct: 472 IGTSVLAAGRVTAYQPAMTLPLDKARDQVRAIYIAEKSAELARQEGQAKLTAW----KAA 527 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 D L A+L T ++ D + V P + + +V Sbjct: 528 PDAASGLTAAL-TVSRDRLQDQPRSVVDAALRANVDQLPAWTGVDLGAQGYAVVKINRVV 586 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Q + LK ++ V + Sbjct: 587 PRDGVDDARARMEREQYLQSWASAEALAYYDLLKQRFKVQI 627 >gi|319787632|ref|YP_004147107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas suwonensis 11-1] gi|317466144|gb|ADV27876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas suwonensis 11-1] Length = 654 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 113/672 (16%), Positives = 238/672 (35%), Gaps = 67/672 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46 ML+ +R S W A I + +L +PFL + + G++ V V Sbjct: 1 MLQKLRDRSSGWAATIIIALLMIPFLFV-VDQSYLGGMGANNVAQVKAPPSWWKGAPGFW 59 Query: 47 ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 ++V F +Q + Q+ G + + ++ILD LV + Sbjct: 60 PVSLLWEHEEVSVEDFRQRLEQARMLARQQQGEAFDPREFEGIENKRRILDELVDEKVML 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE--GINEKEYIDHYTKM 158 G+ V IA P F D KF + + L+ + +++ D Sbjct: 120 LASARDGVVVSDAAVREYIASIPAFQ-VDGKFDQNAYQMALSSQFPPRTPRQFEDLVRTT 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L ++ V ++ LD+ R E R V+ ++ ++A W+E Sbjct: 179 LRQSLVPVGVGSSAFVTDAELDRLLRLSGETRDVELALMPEIAEDTTP-VTDADAKAWYE 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++ +PE I Y+ + + L+ YE K+++ PE R ++ Sbjct: 238 AHTADFMSPEKVAIEYVEVTALQVPEPAAADEATLRERYEAEKQRFGDPERRLASHILVR 297 Query: 279 NQKEADE----------AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324 + D A Q+ G F LA E + LG + + + Sbjct: 298 VPEGGDAAAAEAKAKQLAGQAAAPGADFAALAREHSEDPGSRDTGGDLGWVEQGMMVEP- 356 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 ++F++ + G+ + + FG+ + + ++P F+EV++++A + Sbjct: 357 FEQALFAM-QAGETSGPVKTEFGWHVLQLREVQPGALKPFEEVREELAREQAQADRERAY 415 Query: 385 KEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 E RL + +S++ + K+ L ++ I ++ Sbjct: 416 SELLGRLTDLAYENPSSLEPAANELKLELRKLGPFSR-------DDMVGIAAAPEVKRAA 468 Query: 444 FGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 F ++ + + + + + +++ E PA R L +V +V+ + +T++ + Sbjct: 469 FSEELVEDGTASDPIEIGPQHNVVIRVVEHQPAAARALADVRAEVEAAVRADRTSKAAIA 528 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV---- 557 A + K G+ + + G + + + +FS PV Sbjct: 529 AAEAALERLRK-GEAMAAVVGSEG----EVMPLPGLPRGAPAPTPEANRAIFSAPVPEEG 583 Query: 558 -EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 F + +G VF V G P +++ Q+ + I ++ Sbjct: 584 KATFGRFALPDG-RQAVFAVNAVHPGKPEELPQEQRAMLRQQFAQVDGATMAQDYIRRVR 642 Query: 612 SQYSVTVHDNLI 623 SQ+ V V ++ + Sbjct: 643 SQFKVQVDESQL 654 >gi|296107448|ref|YP_003619148.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila 2300/99 Alcoy] gi|295649349|gb|ADG25196.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila 2300/99 Alcoy] Length = 624 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 250/641 (39%), Gaps = 43/641 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q + + A L ++L+ +++ Q G E + I Sbjct: 61 R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D FS + L+ + + + + + F+G + + Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y + R DY+ + + A S + ++ ++ + E + Y+L +H Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + +I+IS DE+++ YE+NK Y +P V ++F +++ADE + Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294 Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKK ++F + + LS + G + +L + G+ + + + Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRPGEISTPVQTKY 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I + KP T S QEV+ I +Q+ A K + ++L + S+D + Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 K+ + + +D + + +Q++ F D + + + + + S Sbjct: 415 DSLKL---KMQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521 + +++K+ IP+R++ L+EV +KK + +KA ++ E K +++ Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 N + +R ++ D F+ + I + YVV K+ Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581 Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 G + +++D I + D + L + Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622 >gi|294339748|emb|CAZ88110.1| putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D) PpiD [Thiomonas sp. 3As] Length = 640 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 112/645 (17%), Positives = 229/645 (35%), Gaps = 44/645 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IRK S+ + + V++F F+++G+ + VG Q + + Sbjct: 1 MLESIRKHSK-LMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E+ + +G V+ ++ + + LD ++ L LE +V I Sbjct: 60 RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P D F + S +A +G+N ++ + L V+ G + S Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L A + + R V + A + + +++ ++ PE I Y++ Sbjct: 180 LATAAAKAAAQQRVVRLALFKPADYTAQVQVTPQEVETFYKNNTARFQKPESADIQYVVL 239 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293 E I+++ ++ +A Y+ N K+ +P R ++ +A A Q K Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPTDATAAQQEQAKARAEA 299 Query: 294 ---------KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 +F LA ++ G + LG F+ + + AD++F + K G+ Sbjct: 300 IAKQVKANPAEFPALARKDSQDPGSAEKGGDLGYFTADAMVKP-FADAVFGMQKIGEIAG 358 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 I FGY I ++ IKP F VK I Q++ A +++ D + + Sbjct: 359 PIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSADVEAFTNAVFEHPD 418 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVA 457 S + + + V + V+ + + L +F + +K + + Sbjct: 419 SFQAVEDKLHLKVQSASNVTRTPQPAAPDAVSPL-SSKAFLDALFAESSLRNKHNLQAIQ 477 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + ++ PA+ L +V T ++ K AE Q Sbjct: 478 IAPNVWASARVLSFSPAQTLPLAQVQTQARQMLVDQKAAELARKAGEQ------------ 525 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 + + IN + +S+ F + + Y V + Sbjct: 526 -ALKSPATLTFGAPQTIN-LTQPTPGVSPLIVSKAFGLSASKLPATAGVDLGAQGYAVLQ 583 Query: 576 VTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + G P Q + Q + + ++++ I LK ++ V + Sbjct: 584 LDKVIEGQAPAQLISAAANAEQQALTQGVMNAYIEALKKRFGVEI 628 >gi|148359402|ref|YP_001250609.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby] gi|148281175|gb|ABQ55263.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby] Length = 624 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 251/641 (39%), Gaps = 43/641 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S+ S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSLQISDAKVIVNDKPITMQAFETNY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q + + A L ++L+ +++ Q G E + I Sbjct: 61 R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D FS + L+ + + + + + F+G + + Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y + R DY+ + + A S + ++ ++ + E + Y+L +H Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + +I+IS DE+++ YE+NK Y +P V ++F +++ADE + Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294 Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKK ++F + + LS + G + +L + G+ + + + Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRPGEISTPVQTKY 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I + KP T S QEV+ I +Q+ A K + ++L + S+D + Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 K+ + + +D + + +Q++ F D + + + + + S Sbjct: 415 DSLKL---KMQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521 + +++K+ IP+R++ L+EV +KK + +KA ++ E K +++ Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 N + +R ++ D F+ + I + YVV K+ Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581 Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 G + +++D I + D + L + Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622 >gi|83942589|ref|ZP_00955050.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36] gi|83846682|gb|EAP84558.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36] Length = 614 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 132/595 (22%), Positives = 254/595 (42%), Gaps = 21/595 (3%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 + TV VG + + + +Q++ I + G ++ + A+++GLD+ +L LV Sbjct: 33 NGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLVRL 92 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 LD +++GL + + P F G D F + + L + G+NE E+ Sbjct: 93 RALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQSLR 152 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQ 215 + RT + GG+ + D + E RS + L + A D ++A L Sbjct: 153 EEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQLQA 212 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ D + P K ISYI + ++E++++ELQA Y+ ++Y PE R VE+L Sbjct: 213 YYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVERL 272 Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 VF +Q+ AD+A +L+ G F L ++G SLSD+ LG S++ + + D++F+ AK Sbjct: 273 VFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDAVFA-AK 329 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + + G + V+ + PS +F+E + + + +A+ V+ + L++ Sbjct: 330 VGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLDDQ 389 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G ++++I+ K+ + + + +AA + R+ D P Sbjct: 390 LAGGATLEQIAEESKMTLSTIEWTQDSS-----ESIAAYAGFREAATRLTEGDFP----Q 440 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 L DGS +++ + R + DV + W+ + + KA L E + +G Sbjct: 441 IQQLDDGSVFAMRLDGTKEERPNPFDAARADVAEAWQNEQLITALRVKAETLQAELA-DG 499 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 +F LG T R D I+ VF V+ + ++ V Sbjct: 500 ADFA----ELGLEPKTGTDQTR-DAVVSAAPQGFIAAVFDATPGEVELLEGADEVALVRL 554 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 G + + + ++ L ++ A + Q+ ++ Sbjct: 555 DSIK-DAGENDRMTQVKTQIATQLDDQLSQALFAAFSDDVIRRTAPRVDQQAINA 608 >gi|303257878|ref|ZP_07343887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] gi|302859221|gb|EFL82303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] Length = 645 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 116/642 (18%), Positives = 241/642 (37%), Gaps = 39/642 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + R R W+ I ++++ F+ G++ ++ + V + + F Sbjct: 5 MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 63 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + Q+ G V+ + + IL N+ + L + + I Sbjct: 64 REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 123 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F KD +FS +++ + LA G ++++++ + L + +V + Sbjct: 124 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVA 182 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 E R V + + S + ++++++KD+YRAPE I +++ Sbjct: 183 LLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPE 242 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------NQKEADEA 286 + E S EL+ YE+N++KY E R ++ + +A++ Sbjct: 243 TVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKI 302 Query: 287 FQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 +K F QLA+E S L F++ + ++F AKK + Sbjct: 303 LAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMV-PEFDKAVFG-AKKDEIVGP 360 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTS 400 + FGY I HV++I P+ F+EV+ +I + E+ + S Sbjct: 361 VKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDS 420 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VAL 458 +D + + L + +G + I ++++ +F D K +T V + Sbjct: 421 LDPAVEKYGLTLHTLDGLTQSGLPKTSPDAQYI--TKRVIEDLFSPDCLQEKRNTQAVEV 478 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + + +I + PA + +EV ++K + + + ++ KA + L K K+ Sbjct: 479 AANTLVSARIVKHTPAHIKSFDEVKGEIKDQLELEQAS-ALAKKAGEAKLAELKAKKDLE 537 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 G L T ++IN + S P P +YV+ V + Sbjct: 538 GFGHEL-----TVSRINPQSQSMPLIQAEMAVPAKSLPAFTGTTVP---DGAYVISYVES 589 Query: 579 SKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 SK+ + D+ ++ S LK Y + + Sbjct: 590 SKMPAADDSQVDEIRGEALTSQSRADEASFYEGLKKLYKMEI 631 >gi|260577282|ref|ZP_05845256.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2] gi|259020526|gb|EEW23848.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2] Length = 625 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 124/602 (20%), Positives = 239/602 (39%), Gaps = 23/602 (3%) Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87 +G+++ SG S + +VG +K+ + + + +QEL S ++G V+ + G+D+ Sbjct: 35 FGVTNF---GSGVSEIGAVGDRKIDVNQYARALQQELAAFSAQVGSTVSLQEGIERGIDR 91 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 ++ L+ A LD + IGL RV E+A F G F + + + L + Sbjct: 92 QVRQQLLIAAALDNEADRIGLSVGDARVARELAGMAAFQGAGGSFDRETYRATLKNNSLT 151 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIA 206 E ++ + LSR+ + G GG+ L D F E R + L + A+ Sbjct: 152 EADFEGNLRDDLSRSLLQGAVSGGIVAPAALTDTLYSFIAERRGFSLLRLTEADLKTAVP 211 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 P+ A L + + PE +RI+Y + + L+A Y+ +++ Sbjct: 212 APTEADLQAHYTANLPAFTKPEARRITYAALFPATLATTMPVDEAALKALYDSRIDEFVQ 271 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326 PE R VE+LV+P + +A A L G F L E+G +L I +G K + + Sbjct: 272 PEKRLVERLVYPTEADATAARAKLDAGTPFETLVAERGLTLEAIDMGDVGKADLG--AAG 329 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +++F+L + G + G + ++ I + VSF++ + + M+ A + + Sbjct: 330 EAVFALTEPGVV-GPLATDLGPALLRMNAILAAQNVSFEDARDTLVPDMQQDAARRAIGD 388 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + +++ LA G S++++ + + + V + + + P + + Sbjct: 389 KLEAIDDALAGGASLEDLGKEFGMAVASIDFVPEVPAEGE-DAITGYPAFREAATQAVEG 447 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 D TV L DG + +++ E +PA L++ V W+ + + Sbjct: 448 DFA----QTVQLDDGGVVALRLDEIVPAAPIPLDQAQEAVTASWRKA-AVAQALAARAAE 502 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 + + G D G T +I R D + D +S VF P V Sbjct: 503 IKAAVEGGDTLADYGTPA-----VTPEIAR-DGFVEGAPADILSTVFKLPQAGVGLVQGP 556 Query: 567 NGLSYV-VFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + V V +T + K + + Q + +D L + + + Sbjct: 557 DFTGLVQVDSITPAAASGEAADALKASLNAQIEQALAQDAFLMFSNTLAQTAGIRLDEAA 616 Query: 623 IQ 624 I Sbjct: 617 IN 618 >gi|307822662|ref|ZP_07652893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter tundripaludum SV96] gi|307736266|gb|EFO07112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter tundripaludum SV96] Length = 620 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 117/638 (18%), Positives = 251/638 (39%), Gaps = 42/638 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR+ ++ A L+++ VPF +WG+ + L + V SVG + ++ Sbjct: 1 MLTKIREKAQGAFAWGILIIICVPFALWGIQNYL-DTGEEAPVASVGDKDFFQRDVNKAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q + L + L+ L+ L Q++ GL I Sbjct: 60 EQYSQNLQGMT--------IDEQTLKAQALEKLIKDEVLLQYVHANGLVTTDDAAREFIQ 111 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D KF + + L + ++ E+++ L + + ++ Sbjct: 112 SLPYFQ-VDGKFDDKRYKTMLNLQKMSSGEFVNRIKNALIMEQFQRSIIDSSFATKYDVE 170 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R VDY+ + + + P+ + ++++++D Y+ PE + YI + Sbjct: 171 SFFKIQNQQRDVDYVTVAVQKLAEQ--PAEEEIAAYYQQHQDLYQTPEQVSVEYIELSLE 228 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK--- 292 + K I +++D+L+A YE+ K++Y +PE R + ++F ++K A E +K Sbjct: 229 DIAKTIAVTDDKLKAFYEEQKDQYTTPERRKISHILFAINDKVDEKTALEKALKAQKELA 288 Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 K F +A E + LG F+ + + S D+ +L K G+ + + +FGY Sbjct: 289 NKDFAAVAAEVSDDKLTAKTGGDLGLFNAG-VMEKSFEDAASAL-KLGEVSNPVKSAFGY 346 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + V+ + P F+ VK ++ + +A E + L E + D + Sbjct: 347 HLIKVTELVPGEIKPFESVKNEVTKAYQKAQAENAFYEAGETLTEMSYE--NPDNLKTVA 404 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-PLSKDHTVALPDGSYMWVQ 467 + + + KD +I E++ F ++ + + L + ++ Sbjct: 405 DALGVTIKKSALFTKDKGD----SIAADEKIRNAAFTEEVLQGNNSTPIELGTDRLVVLR 460 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + E PA R+L +V D+ + K ++ + ++ + G++ + + Sbjct: 461 MLEHKPAAARELSDVKKDIVAVLLSDKAKQQAIETSKKIKTRL-QAGESIQTVAAENKLQ 519 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQ 585 + T + R + I + + PV I VV ++ K G + Sbjct: 520 VKTVAGLTRSKEDVPLPLSQAIFKA-AKPVGGKPTVFIAELPAGEQVVVSLSKVKEGVMT 578 Query: 586 EKDK-----FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 E DK + + + +++I L+++ ++V Sbjct: 579 EDDKKQMELATKNIAKAFGQTEFNALINSLQAEADISV 616 >gi|33152751|ref|NP_874104.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP] gi|38605184|sp|Q7VKX4|PPID_HAEDU RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|33148975|gb|AAP96493.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP] Length = 620 Score = 346 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 246/640 (38%), Gaps = 35/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + + K+ ++ + F++ G+ L S V V + +F + Sbjct: 1 MIEKMHERTNSVAFKVIFALVSLSFVLTGIGTGLVGADTS--AVKVNGTTIDQHAFNTAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +LD LV+ + Q+ +D+ L ++ Sbjct: 59 ARQQNVLNAQLGERFWDLLDTPEYAKQFN--QSVLDGLVNDELMRQYAKDLKLGISANQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 +I S +F +D KF+++++ L G+ Y + + + + V Sbjct: 117 KSQIVNSQIFQ-QDGKFNNELYQHTLRNNGLTADGYAAIVNEGMLLSQIQKGIVESDFSV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + + R V A S L ++++ K + PE + Y+ Sbjct: 176 PVTEALLAKLLLQQRQVRLATYPIAKEIANQTASVEELQKYYDAKKTDLVEPEQLVVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 F + EK I+++++++ YEKNK + + + + N+++A + ++LK+G Sbjct: 236 TFMPKDIEKNIQVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVAEALKQGTD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA + LG P++ + +LA + + + Y I Sbjct: 296 FAMLANDTSTDSLSAQQGGDLGWTKAGIFPEI-FEQTANALAIN-EVSEPVKVDNNYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V + K + F+ VK I +R + + +S ++ +I Sbjct: 354 KVLDRKEDVALPFEMVKDKIVKIIRDELLLTEYSNISHEMANKAFENSS--SLAEVAQIA 411 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWV 466 +++ + + + A E+++ +F + S ++ AL G+ M+V Sbjct: 412 GVNVQTSTQFNR----EHIPADLNNEKVIKALFNGELRQSGQNSDALDVGNEREPKTMFV 467 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++++ P R R +E D+++ K K + + +KA + V ++ G + Sbjct: 468 RVRDFYPERVRTFDEAKADIEQIVKHQKAEQLLLAKAEENVKALNE--------GNAVNV 519 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586 + + + + + + V+ + G +E Sbjct: 520 DFNEAETLVYAKRADNPILFKTVFAMQKPTDKPTYQVTHNQQGDVVIVSLEKVIDGKQEE 579 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 S L Q+ L + ++ L+S+ SV V+ N I++ Sbjct: 580 FAPLASQLKQLDQTLLRNDLLKDLRSRASVDVNQNFIEQL 619 >gi|15837793|ref|NP_298481.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c] gi|9106161|gb|AAF84001.1|AE003953_5 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c] Length = 655 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 117/671 (17%), Positives = 244/671 (36%), Gaps = 64/671 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47 ML+ +R+ + W+A + +L +PFL + G V + Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIEGGGKDDVAQLQASPTWWKSAPAFW 59 Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 RQ + F + + Q + G ++ ++ K+LD L+ + Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMR 119 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKM 158 E G+ G V IA F K KF+ D + LA+E + Y ++ M Sbjct: 120 LVAEGAGVVISDGAVRSIIANDQRFQVK-GKFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + + N L++ + R+ + + L + +A+ S+ + +W+ Sbjct: 179 MQLSMIPSTIFDSGFVPNTELERILVLLGQTRNAELVTLPALKL-DMAEISDMQIKEWYA 237 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 ++D++R PE Y+ D + S L+ Y+ + E R ++ Sbjct: 238 AHRDDFRQPETLSFEYVDLDAAHLPRP-TPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296 Query: 278 -----PNQKEADEAFQSL-----KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323 +QK A+ L K G F LA ++ G + LG + + Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGVDFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D +F++ K G+ I FG + + IK + + F+ V+ +A + ++ Sbjct: 357 -FEDVLFAM-KVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKE 414 Query: 384 VKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L + L T + S + + L + +AA P +++LF Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + D + + + +++ + L++V V + + ++ +S Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPV 557 A+ LV K G +++ K + + R + + +FS Sbjct: 530 ADALVARLQK-GDTLQEVAKAEKLQITPLTGLQRT---AQVPAFAATRAIFSALSPVAGK 585 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 V +++G Y VF VT G P ++K L Q+ + + + ++ Sbjct: 586 PTVGKVRLDDG-RYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRK 644 Query: 613 QYSVTVHDNLI 623 ++ VT+H + + Sbjct: 645 RFKVTIHKSQL 655 >gi|331000463|ref|ZP_08324138.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] gi|329571795|gb|EGG53475.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] Length = 641 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 116/642 (18%), Positives = 241/642 (37%), Gaps = 39/642 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + R R W+ I ++++ F+ G++ ++ + V + + F Sbjct: 1 MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + Q+ G V+ + + IL N+ + L + + I Sbjct: 60 REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + F KD +FS +++ + LA G ++++++ + L + +V + Sbjct: 120 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVA 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 E R V + + S + ++++++KD+YRAPE I +++ Sbjct: 179 LLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------------NQKEADEA 286 + E S EL+ YE+N++KY E R ++ + +A++ Sbjct: 239 TVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKI 298 Query: 287 FQSLKKGKK-FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 +K F QLA+E S L F++ + ++F AKK + Sbjct: 299 LAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMV-PEFDKAVFG-AKKDEIVGP 356 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTS 400 + FGY I HV++I P+ F+EV+ +I + E+ + S Sbjct: 357 VKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDS 416 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VAL 458 +D + + L + +G + I ++++ +F D K +T V + Sbjct: 417 LDPAVEKYGLTLHTLDGLTQSGLPKTSPDAQYI--TKRVIEDLFSPDCLQEKRNTQAVEV 474 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + + +I + PA + +EV ++K + + + ++ KA + L K K+ Sbjct: 475 AANTLVSARIVKHTPAHIKSFDEVKGEIKDQLELEQAS-ALAKKAGEAKLAELKAKKDLE 533 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 G L T ++IN + S P P +YV+ V + Sbjct: 534 GFGHEL-----TVSRINPQSQSMPLIQAEMAVPAKSLPAFTGTTVP---DGAYVISYVES 585 Query: 579 SKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 SK+ + D+ ++ S LK Y + + Sbjct: 586 SKMPAADDSQVDEIRGEALTSQSRVDEASFYEGLKKLYKMEI 627 >gi|52842082|ref|YP_095881.1| hypothetical protein lpg1855 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629193|gb|AAU27934.1| peptidyl prolyl cis-trans isomerase D [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 624 Score = 346 bits (888), Expect = 7e-93, Method: Composition-based stats. Identities = 113/641 (17%), Positives = 249/641 (38%), Gaps = 43/641 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDRPITMQAFETNY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q + + A L ++L+ +++ Q G E + I Sbjct: 61 R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D FS + L+ + + + + + F+G + + Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y + R DY+ + + A S + ++ ++ + E + Y+L +H Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTLEQVTLDYVLLSMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + +I+IS DE+++ YE+NK Y +P V ++F +++ADE + Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294 Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKK ++F + + LS + G + +L + G + + + Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQISIPVQTKY 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I + KP T S QEV+ I +Q+ A K + ++L + S+D + Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 K+ + + +D + + +Q++ F D + + + + + S Sbjct: 415 DSLKL---KIQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521 + +++K+ IP+R++ L+EV +KK + +KA ++ E K +++ Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 N + +R ++ D F+ + I + YVV K+ Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581 Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 G + +++D I + D + L + Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622 >gi|83953830|ref|ZP_00962551.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1] gi|83841775|gb|EAP80944.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1] Length = 614 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 132/595 (22%), Positives = 254/595 (42%), Gaps = 21/595 (3%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 + TV VG + + + +Q++ I + G ++ + A+++GLD+ +L LV Sbjct: 33 NGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLVRL 92 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 LD +++GL + + P F G D F + + L + G+NE E+ Sbjct: 93 RALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQSLR 152 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQ 215 + RT + GG+ + D + E RS + L + A D ++A L Sbjct: 153 EEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQLQA 212 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ D + P K ISYI + ++E++++ELQA Y+ ++Y PE R VE+L Sbjct: 213 YYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVERL 272 Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 VF +Q+ AD+A +L+ G F L ++G SLSD+ LG S++ + + D +F+ A+ Sbjct: 273 VFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLG--AAGDDVFA-AE 329 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD + + G + V+ + PS +F+E + + + +A+ V+ + L++ Sbjct: 330 VGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLDDQ 389 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G ++++I+ K+ + + + +AA + R+ D P Sbjct: 390 LAGGATLEQIAEESKMTLSTIEWTQDSS-----ESIAAYAGFREAATRLTEGDFP----Q 440 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 L DGS +++ + R + DV + W+ + + +KA L E + +G Sbjct: 441 IQQLDDGSVFAMRLDGTKEERPNPFDAARADVSEAWQNEQLITALRAKAETLQAELA-DG 499 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 +F LG T R D I+ VF V+ + ++ V Sbjct: 500 ADFA----ELGLEPKTGTDQTR-DAVVSAAPQGFIAAVFDAAPGEVELLEGADEVALVRL 554 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629 G + S + ++ L ++ A + Q+ ++ Sbjct: 555 DSIK-DAGENDRMTQVKSQIATQLDDQLSQALFAAFSDDVIRRTAPRVDQQAINA 608 >gi|40062782|gb|AAR37676.1| peptidyl-prolyl cis-trans isomerase, putative [uncultured marine bacterium 439] Length = 613 Score = 346 bits (887), Expect = 9e-93, Method: Composition-based stats. Identities = 111/632 (17%), Positives = 242/632 (38%), Gaps = 28/632 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK S+ WVA + + ++ VPF ++G+ + + S +S V SV + + + Sbjct: 1 MLGAIRKKSKGWVAYLIVGLITVPFALFGIQEYM-GGSSNSAVASVDGEDISLDYYYQKL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++G ++E L + ++D+L++ L+ F + L V I Sbjct: 60 NTQQRNLQQQLGASYSAEI--DNALRQTLIDSLINEKLLENFTNSMKLVTLEEEVRSFIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P+F D FS + ++ L G Y +K +S + S + +D Sbjct: 118 SNPVFQ-VDGVFSEERYIQLLRLNGFTPLAYELEQSKSMSLDQIKRNLNNSAFLSTVQID 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + R V ++VL+ ++++F+ K N+ ++ ++ + Sbjct: 177 QLNDLSAQERDVSFLVLSTEKYKEQIIVDQDQISEYFDNNKSNFIEGHKVQVDFVELSLD 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E++ N+ L+ Y +N+E Y + E R + ++ + A + +K+G F +LA Sbjct: 237 NIEQQTNPDNETLRKLYVENEELYTNSEQRRAQHILLEEESNARAILKEIKEGGDFSELA 296 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 K + LG F +E + ++F + GD + V+ +GY I ++ I Sbjct: 297 RIHSKDITTSEEGGDLGLFERELMV-PEFDKAVFDM-DVGDISEVVKTDYGYHIIKLNEI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +PS SF+EV+ + + E + E + L L+ S+D +S + + Sbjct: 355 QPSTLQSFEEVEGQLLVLHKKNVNQEALYELQEELSN-LSYEESIDVVSSQLDLELQTSD 413 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 + + + + + + D + L ++ + + P R Sbjct: 414 FFSEYSTEYD-EVFVSTAFSDIVFKEGENSD-------VIELSKDRFIVMTLANQQPERQ 465 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE-GKNFRDIGKNLGASLLTTNQIN 535 + L+EV + + + + + A + + + + I Sbjct: 466 KVLDEVEDQIVDIVRNIGAKQLIDDLAQNISSSLTSGDDAQVKTLMVENDLEWNDVGWIT 525 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVGPVQEKDKFI 591 R + ++ S+V+ + + +V + K+ + I Sbjct: 526 R----DSQLPFNATSKVYKLSKPNTGEHTYHSQSADANTTLVIDLKAVKLSDEVINSETI 581 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 N +L S++ L+ + V +L+ Sbjct: 582 DLYLSEENNELFLSLVKKLRDSAEIKVFSDLL 613 >gi|322514009|ref|ZP_08067083.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC 25976] gi|322120159|gb|EFX92120.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC 25976] Length = 625 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 236/640 (36%), Gaps = 34/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + + V KI ++ + F+I G+ L V S V + +F + Sbjct: 1 MIEKMHERTNGPVFKIIFALVSLSFVITGIGTGLAGVDTS--AAKVNGTAIEQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ +++ ++G + ++ IL+ L+ L Q+ +++ L ++ Sbjct: 59 SRQQNILNTQMGERFWDLLDTPEYAAQFNQSILNGLIDDELLRQYAQNLKLGISAEQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI SP F +D KF++ ++ L G++ Y + + + + VG Sbjct: 119 EIVHSPTFQ-QDGKFNNQLYQQALRNNGLSADGYAAIVNEAMLFSQIQEGIVGSHFSVPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V + S L +++ +K+ + PE I Y+ Sbjct: 178 EQELLAKLLLQKRQVRLANYSVAAEAQNQTASGEELQAYYDAHKNAFVEPEKLAIEYVTL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 K ++++++++ YEKNK Y + + + N+ +A Q L G F Sbjct: 238 TPENVAKNVQVTDEQIATYYEKNKADYVTQGETHIAHIQVANEADAKALEQQLAGGADFS 297 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+ + LG P + D+ L + G + ++ Y I V Sbjct: 298 ALAKAKSTDKLSAAQGGDLGWAKVGTFPK-AFEDAANGL-QVGAVSQAVNVDGAYHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVS 412 K + ++VK +IA +R + + + S++ +++ + Sbjct: 356 LARKNEQAIPLEQVKDNIAKTIRNELLLTEYSNLAREMANKAFENNGSLESVAQAGGVAI 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWVQ 467 + V A E++L +F + S ++ AL G M+V+ Sbjct: 416 QKTAQFTQ-------QNVPAELNNEKVLKALFSGELRQSGQNSDALDIGDEHNPKTMFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + R + L+E DV+ K K + + +KA +++ + G+ Sbjct: 469 VSDYQADRVKTLDEAKADVEVAVKQQKAEQALIAKAQEII--------KLLESGQAADVQ 520 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-SYVVFKVTNSKVGPVQE 586 + + + + P + + + V+ + G +E Sbjct: 521 FGAAQTLVYAQAQGQQPVLAQTVFSMTKPTDKATYSVARDEQGNVVIVALDKVMDGSSEE 580 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + Q L + ++ L+++ S+ V+++ +++ Sbjct: 581 FKPLAAQFNQADQLLLRNDLLKDLRAKASIEVNEDFMEQL 620 >gi|94497171|ref|ZP_01303743.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58] gi|94423276|gb|EAT08305.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58] Length = 650 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 139/641 (21%), Positives = 262/641 (40%), Gaps = 18/641 (2%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPF 53 ML + R+ + A +FL V+ F++ ++ F SG T K+ Sbjct: 1 MLSVFRRIIHSKFGAIFAFLFLGVIAAAFILGDVTSGQFGGASLSGGGTAAKAKGYKLTV 60 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 + + ++ + + E G ++ D LV TL + +D G+ Sbjct: 61 AELQDRVQRVFENARRSSPELQIGEFFAQGG-GAQVFDQLVQSLTLRAYADDQGIHISKR 119 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 V +IA+ P F FS+D F + LARE ++E+ D ++ + + ++ G R Sbjct: 120 LVDAQIAQIPAFQDAAGNFSNDNFRALLARERLSEQALRDDISREILQRQLLAPIGIGAR 179 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 PS L+ E R + DP++A L +++K D + PE +RI Sbjct: 180 PSENLVLPYASLLLEARQGQVAAIPAVAFLDDKDPTDAQLADFYKKNSDRFTIPEQRRIR 239 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 Y + D + S+ E+ A Y +NK Y + E R+VEQLV P + A +K G Sbjct: 240 YAVVDAERFAQASMPSDAEISAYYNQNKANYAASENRSVEQLVLPTEAGAKAIAAQVKAG 299 Query: 294 KKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 K Q A+ G S+S + S + ++AD++F+ A++G+ + G G+++ Sbjct: 300 KSLPQAAQGAGLSVSTLDAQSRGQLTSATSKAVADAVFA-ARQGELIGPVRGPLGWLLLR 358 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V+ ++ V+ +I +R+ K + + + +LE+ +A G + DE+++ + Sbjct: 359 VTAVQDKPARPLAAVRDEIVKTLRVQKEKQLLGDFTAKLEDQIADGGTFDEVAKDNGLKL 418 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 P + GK VK A + LL F PD Y + + I Sbjct: 419 ETTPPLLATGKQVKDMAYVAPADVQPLLSPAFTMSADDDAQLVPITPDKRYALIAPGQII 478 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 A L EV + V+ +K ++ + A Q+ + +K G D G L Sbjct: 479 AAAPPPLAEVKSLVQAQYKLNAGNQKAKALAEQIRAKVAK-GTKLADAISQAGVKLPAPQ 537 Query: 533 QINRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 + + + +S +F+ VK PI G Y V ++T + G + + Sbjct: 538 TLGGRRADIMRAEQRPPAEVSILFAMAENSVKTLPISEGRGYFVVQLTKIERGDAKGNPQ 597 Query: 590 FISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++ + M ++ + ++ + VT + +++ Sbjct: 598 LLAQVRDQMGEVIGQEYGEQFERAVEKELGVTRNPKAVEQV 638 >gi|330959391|gb|EGH59651.1| periplasmic folding chaperone [Pseudomonas syringae pv. maculicola str. ES4326] Length = 627 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSEAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L PA ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--PAAVKVTDDEIKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANL--AEQRRAAHILIEVNDKLNEEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + + G ++ + + D + D++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEDALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + N ++ + +K E K+LE+ + +++ Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTNDLKSQQVEQKFVEVTKQLEDSAFESSYLNQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ + +K L+ ++GK K Sbjct: 468 VVVVRAKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + R + + +F P K P +G +V Sbjct: 526 QQGQDWKVMEAVTRS---QEGVDPQVLQTLFRMPKPNGKDKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQATAPNDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|163731980|ref|ZP_02139426.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter litoralis Och 149] gi|161394278|gb|EDQ18601.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter litoralis Och 149] Length = 612 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 115/596 (19%), Positives = 244/596 (40%), Gaps = 30/596 (5%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 T+ + G + +P + +QE+ + Q+ V+ ++A+ +GLD+ +L LV+ Sbjct: 32 SGNIRTIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVAT 91 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 +LD ++GL + I + F G + +F + + L + G++E E+ Sbjct: 92 RSLDHETSELGLSIGDEELRTRILQISAFQGINGEFDREGYRFALEQTGLSEAEFETQLR 151 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215 + ++RT V G +GG+ +D + E RS + +L+ + P +A+L Sbjct: 152 EEVARTIVQGAVLGGIAMPETYVDTLVSYIGEQRSFTWSLLDASDLATPLGAPDDAILRA 211 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++ D + PE K+I+Y +E+ + L+ Y + ++ PE R VE+L Sbjct: 212 HYDDNIDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAEQSAEFNQPERRLVERL 271 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 F + + A +A +L G F L +G +L DI LG S+ + A Sbjct: 272 AFLDTQSAQQAADALTAGDSFDDLVRGRGLALEDIDLGDVSEAELGAAGAGVFA---ADV 328 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + G + V+ + + F+E + Q+ +AS V + ++ L Sbjct: 329 GAVVGPFPSTLGPALFRVNAVLAAQETPFEEAIDVLRPQLAADRASRLVAAQAESFDDLL 388 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G ++++++ +V + + +E+AA P Q V P Sbjct: 389 AGGATLEDLASETDMVVAQIDWTAGST-----EEIAAYPTFRQAAASV----GPRDFPEI 439 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 +L DG +++ +P R +E+ ++ W+ +TA+ ++ + V + G Sbjct: 440 ASLDDGGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAGQVG-LLENGS 498 Query: 516 NFRDIGKNLGAS--LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573 +F D+G + L+ + + R + +VF V K IE+ + ++ Sbjct: 499 SFADLGLDAIVEENLIRSGFVPRT-------PPGFLEEVFDMEVG--KAQVIESDAAVIL 549 Query: 574 FKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ + + +Q + +D+ + + + ++ +Q Sbjct: 550 VRLDAIAPPAADGDAAALRAQLEQQASQQLARDVFEVFANDVVLRADPQINQQALQ 605 >gi|54294744|ref|YP_127159.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens] gi|53754576|emb|CAH16060.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens] Length = 624 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 114/641 (17%), Positives = 244/641 (38%), Gaps = 43/641 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q + + A L ++L+ +++ Q G E + I Sbjct: 61 R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D FS + L+ + + + + F+G + + Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIK 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y + R DY+ + + A S + ++ ++ + E + Y+L +H Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + +I+IS DE+++ YE+NK Y +P V ++F +++ADE + Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYN 294 Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKK ++F + + LS + G + +L + G + + + Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQISIPVQTKY 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I + KP T S QEV+ I +Q+ A K + ++L + S+D + Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 K+ G I +Q++ F D + + + + + S Sbjct: 415 DSLKLKIQHTEPFSRYGGK------QPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSV 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIG 521 + +++K+ IP+R++ L+EV +KK + +KA ++ E K +++ Sbjct: 469 IVLRVKKHIPSREQTLDEVRDQIKKVL----AKQYGDAKAKEIGSSLLHPVEDKQQQELI 524 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 N + +R ++ D F+ + I + YVV K+ Sbjct: 525 ANNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRIND 581 Query: 582 GPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 G + +++D I + D + L + Sbjct: 582 GKLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622 >gi|83718610|ref|YP_442650.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis E264] gi|83652435|gb|ABC36498.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia thailandensis E264] Length = 632 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 91/633 (14%), Positives = 225/633 (35%), Gaps = 43/633 (6%) Query: 15 KIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 FL+++ +P I G+ S+ V +V K+ + F +Q++ Q +G Sbjct: 1 MFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLRQQVDQARQMLGA 60 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP---LFHGKDN 130 +++ + +++LD L+ L + + L A G V + P D Sbjct: 61 QFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLSDPVVASLKKADG 120 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 F + + LA +G+ +Y + L+ + V + + + R Sbjct: 121 SFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSVARRLTELAEQQR 180 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 V ++L + P++A ++ +++ +K + E I Y+++ + S+ Sbjct: 181 EVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVYSQAAAAAAAQPSD 240 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKGKK-FI 297 +++ Y+ N +Y + V + + +A++ +K F Sbjct: 241 IDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQLLAEVKAHPDQFA 300 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 Q+AE+ + LG ++ + D KKG+ + V+ G FG+ I Sbjct: 301 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISGVVQGDFGFHILKA 360 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVS 412 +++KP+ EVK I ++ A++ ++ + + S+ + + + Sbjct: 361 TDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAKSLQPAADKYTL-- 418 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIKE 470 + + + + + L VF D + ++T + + + + + ++ Sbjct: 419 -TIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAIDVGNNTLIAARVTS 477 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P+ L+ + V+ + A + E K K+ S Sbjct: 478 YQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKS-KSTAGFAAADKIS--- 533 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKD 588 + +S ++ + + + + Y +F+V + + Sbjct: 534 -------RTQAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNSVVAAAPADDQ 586 Query: 589 KF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + L Q+ + ++ +A L+++ V + Sbjct: 587 RLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 619 >gi|42520635|ref|NP_966550.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410374|gb|AAS14484.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 602 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 129/624 (20%), Positives = 273/624 (43%), Gaps = 32/624 (5%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + K+ +V+L + G+ + L V VG++ + + + ++ I Sbjct: 2 NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S G + E+ + + D +L+ L+ L ++GL + I + F Sbjct: 62 S---GSDASREQVKKLKYD--LLNGLIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184 +F + F L + EKEYI K+L + P + +Q + Sbjct: 117 DKGEFDKNKFYETLNDLHMTEKEYIAKLEKVLPAMMFMTSLFKDNYPVTFGEKIDEQIYK 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 ++ R VD + + V I +P + L +E+ K ++ PEY+ YI E Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQKYFED 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +I+IS++E+ E+ + K R + +F ++EA+ A ++ ++GK F Q+ EE Sbjct: 237 QIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQIVEEF 292 Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 293 GKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAHQISDE 350 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 ++KKDI + + K+ E+V + ++ + G+ ++EI + + VD +G Sbjct: 351 DLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGPVDASG 410 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 KD G V L+ +F ++ K + + D + + V+I + P + + EE Sbjct: 411 KDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIFPPKLQSFEEG 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 + W++ E + ++ ++ ++ D+ + G L+ Q++R + + Sbjct: 466 KALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRNKVDQQ 521 Query: 543 FFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + + + ++F+ PI+ N + V K +S G + D + Sbjct: 522 NYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNTLDTGKRVMI----- 576 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624 L + +I+YL+S+Y V V+ ++ Sbjct: 577 SLKEQLISYLESKYKVEVNHAILD 600 >gi|56416723|ref|YP_153797.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries] gi|222475088|ref|YP_002563503.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Florida] gi|56387955|gb|AAV86542.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries] gi|222419224|gb|ACM49247.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Florida] Length = 670 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 267/637 (41%), Gaps = 33/637 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67 R L + F+ L +S V VG + + +++ EL I Sbjct: 43 RNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYI 102 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 + ++ + + G+ + L +V L++F +++ L + + I P+F Sbjct: 103 ESLVHQKLSEDDIKRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQD 162 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182 K K F LA G+ E YI L + G S + Sbjct: 163 KSGKLDEQRFKDLLADAGMTEASYIGKVRDSLPAFVLSECIFPRSGEVYSQYYDGFAQDV 222 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVH 240 R ++R+VD + ++ V + P+++ L + + N PEY+ Y++ Sbjct: 223 LRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSED 282 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ SNDE+++E + ++ + R V LVFP++ EA A++++K+GK F + Sbjct: 283 DALDEVTASNDEVESEIKNSELH----DQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 338 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ G ++ +++L + +KE +P + + +++F L +G+ + V G+ + + + P Sbjct: 339 KDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSKHPIS 396 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418 +++K+ +A ++ KA E ++ E ++ G S E++ K +I L Sbjct: 397 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 456 Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 D G+D GK E ++ P L + H V++ + +Y V + P Sbjct: 457 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGN-AYFSVIVTGVTP 515 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 +R R +E + + WK E+ A+ L + K G+N G +G Sbjct: 516 SRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGENP---GSAVGIVTKKNEN 571 Query: 534 INRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEK 587 I+R++ + + D + QVF + V I+ G + + P +E Sbjct: 572 ISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANKIFIATLKDIKTPGQVNEKEL 631 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +F ++ T + ++++L ++Y V ++ L++ Sbjct: 632 KEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 668 >gi|302187980|ref|ZP_07264653.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae 642] Length = 627 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 233/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNEEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + + G ++ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + + +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ + +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKTKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFK-- 575 G + R + + +F P K P + S+V+ + Sbjct: 526 QEGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLN 582 Query: 576 -VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625 >gi|213968838|ref|ZP_03396979.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. tomato T1] gi|301384116|ref|ZP_07232534.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tomato Max13] gi|302059522|ref|ZP_07251063.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tomato K40] gi|302135027|ref|ZP_07261017.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926441|gb|EEB59995.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. tomato T1] Length = 627 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L P+ ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--PSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+ + +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDDQAKAKVEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G F+ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VLVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + ++R + + +F P + K P +G +V Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQALFRMPKPVAKDKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|28870877|ref|NP_793496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. tomato str. DC3000] gi|28854126|gb|AAO57191.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|331019234|gb|EGH99290.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 627 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L P+ ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--PSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+ + +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDDQAKAKVEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G F+ + + D + +++++L K + + Sbjct: 296 QRLAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VLVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + ++R + + +F P + K P +G +V Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQALFRMPKPVAKEKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|330963316|gb|EGH63576.1| periplasmic folding chaperone [Pseudomonas syringae pv. actinidiae str. M302091] Length = 627 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 104/643 (16%), Positives = 234/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L P+ ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--PSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+ + +D+LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVTVKDDDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKVEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G F+ + + D + +++++L K + + Sbjct: 296 QRLAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + ++R + + +F P + K P +G +V Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQTLFRMPKPVAKDKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|58697113|ref|ZP_00372552.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225630407|ref|YP_002727198.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi] gi|58536595|gb|EAL59930.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592388|gb|ACN95407.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi] Length = 599 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 129/624 (20%), Positives = 275/624 (44%), Gaps = 35/624 (5%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + K+ +V+L + G+ + L V VG++ + + + ++ I Sbjct: 2 NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S G + E+ + + D +L+ L+ L ++GL + I + F Sbjct: 62 S---GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184 +F + F L + EKEYI K+L + P + +Q Sbjct: 117 DKGEFDKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYN 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 ++ R VD + + V I +P + L +E+ K ++ PEY+ YI + E Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFED 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +I+IS++E+ E+ + + + R + ++F ++EA+ A ++ ++GK F Q+ EE Sbjct: 237 QIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVEEF 292 Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 293 GKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQISDE 350 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 ++KKDI + + K+ E+V + ++ + G++++EI + + VD +G Sbjct: 351 DLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDASG 410 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 KD G V L+ +F ++ K + + D + + V+I + +P + + EE Sbjct: 411 KDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFEEG 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 + W++ E + + ++ ++ D K G L+ Q++R + + Sbjct: 466 RASAVELWQSEFIKERMFKIGQEFAVQLREK----TDWEKIQGVELVEDQQMHRNE---Q 518 Query: 543 FFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + + + ++F+ PI+ N + V K +S G + D + Sbjct: 519 NYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMI----- 573 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624 L + +I+YL+S+Y V V+ ++ Sbjct: 574 SLKEQLISYLESKYKVEVNHAILD 597 >gi|320325365|gb|EFW81432.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. glycinea str. B076] Length = 627 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 102/643 (15%), Positives = 228/643 (35%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G ++ + + D + D++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSSFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + I ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + + R + + +F P K P +G +V Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|291279447|ref|YP_003496282.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans SSM1] gi|290754149|dbj|BAI80526.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans SSM1] Length = 626 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 117/646 (18%), Positives = 255/646 (39%), Gaps = 45/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVV---LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML + R + ++LV+ + FL+WG+ + + V ++ F+ + Sbjct: 1 MLRMFRNQKKILAFFLWLVIAAFIGTIFLVWGVGGN--RGRQKNYAIKVNDFEISFNEYQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + +G + + ++ ++K++ D+++ L +G+ V+ Sbjct: 59 QEYDKFSNTLKSLLGGEIPN----TININKQVTDSIIEKYLLLDQANKLGVFVSDVEVFN 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI P F + +F +V L G+ + L + + + Sbjct: 115 EIKNIPSFQ-TNGQFDAKRYVEILRLNGLTPASFERSIKADLLVQKTKNLITQSVSVNEN 173 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + + YI LN+ ++ L +FEK K++YR PE ++ YI Sbjct: 174 EIKNEYIYRNKTAKISYIKLNSEKFKKDVTYNDEELKAYFEKNKEDYRVPEKIKLKYIKI 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285 D + K+I++S++E++ Y ++ +++ E + ++ + + + Sbjct: 234 DPKDFNKEIKVSDEEIEKYYLQHTDEFIEKEKVAAKHILIRVKDWNNKKEVAEAKKKIEN 293 Query: 286 AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 Q +KKG KF LA++ + LG F+K + D +F L K GD + ++ Sbjct: 294 ILQKIKKGAKFEDLAKKYSDDPTAKNGGDLGYFTKGQMIK-EFEDVVFKL-KPGDISDIV 351 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FGY I V KP ++ E K I +++ K KE + + +++ Sbjct: 352 KTKFGYHIIKVYGHKPEKKLTLDEAKPLIIKKLKTLKKDSYFKEYVLDIYRDILKASNIT 411 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + K + + D+ + + LF++ + + +G Sbjct: 412 AYTLEHKDIPVY--ETDYFSMFDNIPPIGNDLKLKTKLFKLETSEV-----TNIIDINGV 464 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 ++ E + K E+V +V D+ K+ E A L+ +Y++ + I Sbjct: 465 KYIFELIEKKKSYIPKFEDVKKEVINDYINDKSVELAKDNALSLIKKYNE----LQKIAD 520 Query: 523 NLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 + S+ TT R+D + + ++F+ +++ P G + + +V N K Sbjct: 521 SKKLSITTTPDFKRIDPIPDIGTNEELSKKIFNKGKGLLET-PFVVGNNIFIIEVNNIKY 579 Query: 582 GP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 EK + SY+ + + L+S I LK+ + V+ ++ Sbjct: 580 PDFSKITEDEKKEIESYILSIKQDEALNSYIEKLKNNAKIEVNPSI 625 >gi|257483811|ref|ZP_05637852.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320327650|gb|EFW83658.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330985643|gb|EGH83746.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012683|gb|EGH92739.1| periplasmic folding chaperone [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 627 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 102/643 (15%), Positives = 228/643 (35%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G ++ + + D + D++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + I ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + + R + + +F P K P +G +V Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|148260238|ref|YP_001234365.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5] gi|146401919|gb|ABQ30446.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5] Length = 628 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 116/630 (18%), Positives = 234/630 (37%), Gaps = 8/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +IR+ W+ + F VVL F+ WG+S + + S + +VG Q + + ++ Sbjct: 1 MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L + + + + L + A ++ +G+ A + ++ Sbjct: 61 QRTLNAYATQNSGR-EPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVF 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG D KF F + LA + ++ L + ++ G+ L+D Sbjct: 120 AIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAPAPLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + R+V + L P+ VL +++ + + P + ++ Sbjct: 180 QIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVVVLSPA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +S E+ A+Y++ K K+ RTVE + + K A + K G + + Sbjct: 240 LIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKSAAALANAWKGGADWAAMQ 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + + + + +K + A G+ + + G+ G + V+ Sbjct: 300 KAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTKAVAGG 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 V I ++++ KA V L++ LA T++ ++ + + VD Sbjct: 360 DKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV-SVDR 418 Query: 421 AGKDVKGKE--VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G V GK + Q + + P + V+ P SY + + I + Sbjct: 419 EGMTVDGKPAGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRIIKPALKP 478 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 ++V DV DW + + A +L+ K GK G ++ T+ + R Sbjct: 479 YDKVKADVLADWTGAQVERQEEVAAAKLLTA-VKGGKTLAAAASAAGLTVTTSAPMTR-A 536 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQE-KDKFISYLTQ 596 K FS + G VV + K G + + L Q Sbjct: 537 KPAKGVPPQLAQVAFSLKKGAPTMVQTQEGFVVGVVSDIAEPKPGSDKAFHQRVADSLGQ 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 M +D+L + A L+ + V ++ L+ + Sbjct: 597 SMQEDVLQTYAAALRQRDHVKINTKLLNQI 626 >gi|254448800|ref|ZP_05062257.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma proteobacterium HTCC5015] gi|198261641|gb|EDY85929.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma proteobacterium HTCC5015] Length = 643 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 120/651 (18%), Positives = 258/651 (39%), Gaps = 37/651 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR+ VA + + L + ++ L D + + G ++ ++V + V + Sbjct: 1 MLLAIREKVTGAVALVIIAALGLFMVVPMLYDYVAGM-GDNSAITVDGESVSIQQYNQRL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q ++Q G + + L K+ D + +Q + G + I Sbjct: 60 SQNRQRLTQAFGGELPESFGDQL-LAKRTTDQFIQQLLQEQATLNDGYAISDEDLVRVIQ 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F D +F + + +L G + Y TK + + L+ Sbjct: 119 EAPQFQ-TDGQFDPEAYKRQLRSIGYSPALYEQTMTKRFVQGQFQEGITQTAFVAPGQLE 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + R ++YI + + + S+A + +FE +++ + PE + Y+ + Sbjct: 178 QMAALMHQERDIEYIAFSGEAFRSDIELSDAEIEAYFEDHREQFMHPEKVSVEYVAINFE 237 Query: 241 EKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADE------------A 286 + + +E++ +E+Q EY+ + +Y S E R+ ++F +ADE Sbjct: 238 DYKNGLEVTEEEVQQEYQAGVDSGRYTSQEERSASHILFAFDSDADEDARAAVRSEAEQV 297 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + +G F LA+E G ++ + ++F+L ++G + ++ Sbjct: 298 LTQINEGGDFSALAKEHSDDPGSAEQGGSLGVVQKGVMVPEFEQAVFNLPEEGAVSDLVE 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402 FGY I + P+ F E+ I ++ KA + D + + S++ Sbjct: 358 SQFGYHIIRLDEYTPAEAQPFDEISAKIRQELLDNKARLRYDSDIDEMSNLAFESSGSLE 417 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 +++ S++L D+ + G+ +A+ P + F+ DD + T+ L +G Sbjct: 418 PVAQAL---SLELQSSDWFTR-TSGEGIASDPVVREAAFKTDILDDGYNSG-TLDLSNGD 472 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + +++KE P ++ LEE +DV+ T AE++S+ +Q + + G++ I + Sbjct: 473 VVVLRVKEHEPRHEKTLEEARSDVESALMTKTVAEQLSAAQSQAAEAW-RSGESGEAIAE 531 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNS 579 LG T + R + E I F + + +G V K+ + Sbjct: 532 RLGGEFNTALGVTRKNPEQ--LPRGLIQVTFKMAMGEAEASVANANLSGEDRAVVKLLDK 589 Query: 580 KVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + G E+++ L +V+ L+ + + ++ +LI + Sbjct: 590 RPGQWEQLTQSEQEQIKQQLLASKGGMDYAAVLNQLREEADIDINQSLIDQ 640 >gi|89054374|ref|YP_509825.1| putative peptidyl-prolyl cis-trans isomerse D [Jannaschia sp. CCS1] gi|88863923|gb|ABD54800.1| putative peptidyl-prolyl cis-trans isomerase D [Jannaschia sp. CCS1] Length = 617 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 124/625 (19%), Positives = 253/625 (40%), Gaps = 28/625 (4%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K I + +LFV G+S V SVG ++ + + E+ Sbjct: 7 KKVSNVFVWILMGLLFVALA---GFGIGSFSGGASQVGSVGDVEITADDYFRALNNEINA 63 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 S V R+ G+D +IL L + A L +G+ V +IA+ F Sbjct: 64 QSADERRAVPFAEIRARGIDAQILAGLTARAALSHEAGAMGISVGDAEVAAQIAQVQAFQ 123 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 F + + L ++G +E+ + + ++R + +GG+ P+ + + + Sbjct: 124 NTSGNFDRNTYEFVLQQQGATPREFEEDTREDVARALLQTAVIGGLTPNEIFAETITAYQ 183 Query: 187 FENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E R + + + IA+P++A L +++++ + + PE +RI+Y Sbjct: 184 SETRDFTRLEVREGDLTVPIAEPTDAELAAYYDEFPERFTRPEARRITYAWIIPSAIMDD 243 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKGKKFIQLAEEQG 304 +EI D L+ Y+ ++Y PE R +E+LVF + E D + F L ++ Sbjct: 244 VEIDEDALRELYDDRIDEYVQPERRLLERLVFNSDAEVDAALAAIEAEETDFDTLVADRD 303 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 +L D+ LG + + + D + A + + + G + V+ + S V F Sbjct: 304 LTLEDVDLGEIAADDLSDAAAAII--FADEDSELLGPVPSPLGPALFRVNAVLQSSEVPF 361 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 +E + D++ ++ A ++ + + +++ LA G +++E+S + L +D+ Sbjct: 362 EEARDDLSAELAQEGARRQIDDMREGIDDLLASGATLEELSD---GTVMTLGTLDYTPAS 418 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 +G +AA V D P + L DG +++ E +P L+E+ Sbjct: 419 EEG--IAAYDNFRDAAVSVQDSDFP----ELLELSDGGLFALRLDEVVPPTLPPLDEIEA 472 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 +V + W+ + V+ +A+QLV + ++ G D+G L+ + Sbjct: 473 EVAEAWQATALRDAVAERASQLVAQLAQ-GATLEDLGDTAEERLIRRQDLL------PDL 525 Query: 545 GYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK--- 600 ++QVF V P + V NS V + +S + Q + + Sbjct: 526 PATTVAQVFQLEGTGDVVMIPGADAAHIVRLDTINSGVRDAPDTSVILSIMNQSIAQSMA 585 Query: 601 -DLLDSVIAYLKSQYSVTVHDNLIQ 624 D+ ++ L++ +T + +I Sbjct: 586 VDIFEAYGQALQANAGITTNQGVIN 610 >gi|329113481|ref|ZP_08242262.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001] gi|326697306|gb|EGE48966.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001] Length = 639 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 125/634 (19%), Positives = 256/634 (40%), Gaps = 21/634 (3%) Query: 1 MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFIN 58 M+ +R+ +W+ ++ +V+F+ F+ WG+ D + + V VG+Q+V Sbjct: 1 MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSSDDLAT 60 Query: 59 SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + EL I++++G S A + +IL L+ A L + + + V Sbjct: 61 ALQSELPTIARQMGVSDPSHIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVAVPDSAVR 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 E+ P F G + +F F +L G+ E+ ++D L+ ++ S+ Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLHDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L + + + R VD++ + P P +AVL +++ + +R PE + ++ Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFAAQPTPKTPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 I + +++ Y++ K +Y PE R ++ + +Q +A + K G + Sbjct: 241 LSPQTVADSITMDEADIKRIYDEQKSRYNVPETRDIQLITLQDQAQATAIANAWKVGGNW 300 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + + K + + + + IP +L ++F + G + + G+ + V+ I Sbjct: 301 QAI-QNSAKDAAAVEMPNARPSTIPSTTLRQAVFHAPE-GQVSDPLKTEGGWAVFRVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--D 414 T +++ KKDI +Q R A E ++L++ LA G +D I V+ Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GQGLDAIPADLGAVAAAGT 417 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 L A+ +E ++ ++F + P ++ V PD S V++ + PA Sbjct: 418 LDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVEVDTATPA 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK-NLGASLLTTNQ 533 R + TDV W+ + +A L L KN + +G N + LT + Sbjct: 477 APRTFAQAQTDVLAAWQDEARKHAANEQATTLYLAA----KNKQALGTVNASGAQLTRDA 532 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDK 589 NK + + + E+ ++V VT + P + Sbjct: 533 AFSFAKPNKNIPAALMDYLPRMQPG--QAVMTEDDGHFLVAVVTKLFVPNPPAPADGVQR 590 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L Q + DL+ S + L + +++ + Sbjct: 591 LKDSLAQADSDDLVASYVEALSKRTPPHINERAV 624 >gi|169796089|ref|YP_001713882.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter baumannii AYE] gi|213157178|ref|YP_002319223.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB0057] gi|215483544|ref|YP_002325763.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB307-0294] gi|301347497|ref|ZP_07228238.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB056] gi|301511279|ref|ZP_07236516.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB058] gi|169149016|emb|CAM86893.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter baumannii AYE] gi|213056338|gb|ACJ41240.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB0057] gi|213987782|gb|ACJ58081.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB307-0294] Length = 621 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 110/635 (17%), Positives = 222/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + A SN T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293 K ++ EL+ Y K E R V+ ++ D A Q L K G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + +VK K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|54297774|ref|YP_124143.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris] gi|53751559|emb|CAH12977.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris] Length = 624 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 109/639 (17%), Positives = 250/639 (39%), Gaps = 41/639 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q + + A L ++L+ +++ Q G E + I Sbjct: 61 R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D FS + L+ + + + + + F+G + + Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y + R DY+ + + A S + ++ ++ + E + Y+L +H Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + +I+IS D++++ YE+NK Y +P V ++F +++ADE + Sbjct: 235 DIKSQIKISPDQIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294 Query: 289 SLKKG-KKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKK ++F + + LS + G ++ +L + G + + + Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSITNKGILPWITGGQNEYGRALSNLTRPGQISIPVQTKY 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I + KP T S QEV+ + +Q+ A K + ++L + + D + Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIMKDQLTSDMAQAKYAQVLEQLTDLSYQ--TPDSLDP 412 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYM 464 + + + + +D + + +Q++ F D + + + + + S + Sbjct: 413 VLDSLQLKIQHTEPFSRDGGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSVI 469 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIGK 522 +++K+ IP+R++ L+EV +KK + +KA ++ E K +++ Sbjct: 470 VLRVKKHIPSREQTLDEVRDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELIA 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 N + +R ++ D F+ + I + YVV K+ G Sbjct: 526 NNQFEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDG 582 Query: 583 PV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + +++D I + D + L ++ Sbjct: 583 KLSSLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHANI 621 >gi|301060821|ref|ZP_07201635.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] gi|300445070|gb|EFK09021.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] Length = 635 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 112/639 (17%), Positives = 256/639 (40%), Gaps = 36/639 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L ++RK +++W+ K + ++ + F+ + F+ + V V + + + +++ Sbjct: 3 LSLMRKHAKSWLIKALIAIIAIVFVFY--FGYSFTSDKAMKVAYVNGELINGPEYEKAYR 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 L + + N + L ++ LD+L++ + Q ++GL + I Sbjct: 61 DMLMSFQARYKDMWNDNLLKIFNLKQRALDSLITQRLMSQAATELGLAVTEEEIQKAIMT 120 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F + +F + + L+ + +++ T L + + ++ + + Sbjct: 121 YPAFQ-INGQFDMRRYQALLSANHMKPEDFEASITSELLDQKLKQFLFAFLNITDQEILE 179 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F E + ++ + A L ++FEK K++YR PE + Y+ D Sbjct: 180 YYTFANEKVKIGFVEFKPEDFKKSVTIEDKAKLKEYFEKNKESYRVPEKIAVRYLEIDPK 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288 + E ++E++ E+Q+ YE N ++Y P+ ++F +K+A++ + Sbjct: 240 DFEGEVEVTEKEIQSYYEYNSDRYSQPKQVKARHILFKFNKDDSEEVKNTVKKKAEKVLE 299 Query: 289 SLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +KG+ F LA++ + LG F + + ++ F+L KKG+ + ++ Sbjct: 300 KARKGEDFASLAKKYSEGPTKSKGGDLGYFKTGEM-EKPFEEAAFAL-KKGEISDLVQTR 357 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FGY I V +IK + + VK +I + +E E L + + ++ Sbjct: 358 FGYHIILVEDIKEAGIKPLENVKGEIRATLTGNLTAELAHEKGLTLLDQMPYEVDLNAYG 417 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 ++ + + K + I E++ +FG D V L G + Sbjct: 418 KQNGLSAKTSEPFS------KNAPIPGIEGSERVTATLFGLDKD-EASSLVELG-GKFYI 469 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 Q ES + +L+ V V++++ + + S A + + E K+GK++ + K Sbjct: 470 FQFAESKASYLPELKTVKKAVEENFISQEARVSAESAATKYLNEL-KDGKSWETMAKEHN 528 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQ-VFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 + TN R + +++ F G P N + + + ++ Sbjct: 529 RKIQQTNFFTRREAIPDIGNAPALNEMAFKLGKDNRYTQKPFVNDKAVFIIRWEGNEGID 588 Query: 584 V----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +EK + + L Q ++ + ++ I L+ + + + Sbjct: 589 ETKFKEEKGTYRNSLAQTKHQRIFENWIQNLRKKAVIEI 627 >gi|269958860|ref|YP_003328649.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale str. Israel] gi|269848691|gb|ACZ49335.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale str. Israel] Length = 632 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 126/635 (19%), Positives = 260/635 (40%), Gaps = 28/635 (4%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67 R L + F+ L +S V VG + + +++ EL I Sbjct: 4 RNVFVGAVLAAVLCAFVFVTFGSVLPFGDTASDRCVAKVGSNCLSLREYSTAYQGELAYI 63 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 + ++ + R G+ + L+ ++ L++F ++GL + I P+F Sbjct: 64 ESLVHQKLSEDDIRRFGVKEMTLNRMIDDMVLEKFARELGLRVSSKSIRDLIGDMPMFQD 123 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182 K K F L+ G+ E YI L + G S + Sbjct: 124 KSGKLDERRFKDLLSDAGMTEASYIGKVRGSLPAFMLSECIFPRSGAVYSQYYDGFAQDV 183 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAPEYKRISYILFDVH 240 R ++R VD + ++ V P++ L + + PEY+ Y++ Sbjct: 184 LRGIMQSRIVDVVEISPSAVENTPTPTDNDLEAMYSEGTRNGELVMPEYRSAKYMIVSED 243 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +++ S+DE+++E + ++ + R V LVF ++ EAD A Q+LK GK F + Sbjct: 244 DALEEVTASDDEVESEIKNSELH----DQRDVLNLVFSSESEADAASQALKGGKTFEAVV 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ G ++ I+L + +KE +P V + ++F L G+ + V G+ I + N P Sbjct: 300 KDAGTTVEAITLKNVTKELLP-VEVRSAVFGL-NDGEVSGVFRSVVGWHIMKILNRHPIS 357 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418 +++K+ +A ++ KA E ++ E ++ G S E+ + ++ L Sbjct: 358 KEDLKKLKERVAASIKRQKARELFSAGIRKANEMISHGAESFSEVESVFRKPTMGVLQNF 417 Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 D G+D+ GK E ++ P + L + H V++ + +Y V + + P Sbjct: 418 DSNGQDLTGKGHTYAEESSFPGIVEALPALAFSSQVGKPSHFVSIGN-AYFSVIVTDVTP 476 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 AR R +E + WK A E+ A+ LV + + G++ + + + Sbjct: 477 ARARTFDESKHLLLDRWKNAFVAGEMRKIASNLVTKL-RAGESLGKLAGVVTKKGEDIGR 535 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGP---VQEKDK 589 +++ + D ++QVF+ V V ++ ++ + + + K +E + Sbjct: 536 VSKTKVGGTNYPEDLVNQVFNMRVGDVGEGVTDHSMNKIFIATLKEIKTPSQVNEKELKE 595 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 F ++ + ++ +L +Y V V+ L++ Sbjct: 596 FQAHFVGSAISSIRRQLLNHLTDKYRVKVNRKLLE 630 >gi|332851740|ref|ZP_08433665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150] gi|332865885|ref|ZP_08436665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113] gi|332729747|gb|EGJ61082.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150] gi|332734935|gb|EGJ66021.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113] Length = 621 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 109/635 (17%), Positives = 221/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293 K ++ EL+ Y K E R V+ ++ D A Q L K G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + +VK K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLTQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPTPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|329850639|ref|ZP_08265484.1| rotamase family protein [Asticcacaulis biprosthecum C19] gi|328840954|gb|EGF90525.1| rotamase family protein [Asticcacaulis biprosthecum C19] Length = 645 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 117/637 (18%), Positives = 260/637 (40%), Gaps = 16/637 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ I+R ++TW+ K ++++ F+ G + FS S S+ V+ G KV + F + Sbjct: 1 MISILRDFTKTWIFKGLMILIAASFIGVG-GASYFSGSNSTDVIVAGNVKVTAAEFKANV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + G + +E+ + + ++L L +++ +G+ + E+A Sbjct: 60 DSMKRYYETQ-GQTITNEQLIAENIPGRLLAQLTDRKATIAWLDRLGVRPSSKLILAEVA 118 Query: 121 RSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + PLF +F D + +LA + +K + + ++ + G+ + Sbjct: 119 KIPLFFNSVTGRFDMDTYRQQLASRDMTDKMFEADLREQIAEQQYISSAQAGLEAPRVFA 178 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 F ++R L+ ++V +P+ A + +++ + PE + S I F V Sbjct: 179 ATDAAFGLQSRDASMFFLSPQNVTMPGEPTQADIETFYKANLQRFTLPESRAASVITFSV 238 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K + +S+++L+ YE + +PE+RT Q+ P+ A++ +LK G+ + Sbjct: 239 VNYAKSVSVSDEDLRQLYESRRASLATPEVRTFVQVRAPDMAAANKVSAALKAGRSAEEA 298 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A+ + SL + + D +A++ F + + G+ + + G+ G + + IK Sbjct: 299 AKANKGEVISYSL--RPQTAVADDKIAEAAFKM-QTGEISAPVQGTLGISVIKMGEIKIG 355 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 SF+ + + ++R +A+EK+ E + LA G D +RR + L + Sbjct: 356 SAPSFESARAQLDEELRRQRATEKLNEATNAFADALAKGEEFDAAARRLNLTVAPLEPIT 415 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G G + L+ +F S + L +G Y +++ P+ L Sbjct: 416 ADGMGRSGTNYSTY---GALVKGIFDLPQVGSVSEVLPLGEGEYFALKLTGLQPSGAPPL 472 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +V ++ W+ K AE ++++A++ + +K G+ + + A + + I Sbjct: 473 AQVQAELAVLWRREKAAETINAEADKAMARLAK-GETLAAVAASYKAEVRSQKAITLQTA 531 Query: 540 ENKFFGYDGISQVFSGPVE--MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 + ++VFS V P++ + + ++ G + + + Sbjct: 532 QQMQMPQAVAARVFSSKAGETFVAEMPVQGVPAVAIGRLDAIHQGDATQANTMATMSKAQ 591 Query: 598 MNKDLLDSVIAYLKSQYSVTV----HDNLIQRYLDGE 630 ++ L + ++ V V + R L E Sbjct: 592 ASQALGQDMGTVIQKNARVAVKAKSNTEAAYRALGLE 628 >gi|84515600|ref|ZP_01002962.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53] gi|84510883|gb|EAQ07338.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53] Length = 613 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 120/625 (19%), Positives = 258/625 (41%), Gaps = 27/625 (4%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 +K A I + V+ V +G T+ +VG + + +++ + Q++ Sbjct: 3 QKKKTKIGAWIIVGVVLVGLAGFGTGGL---TGNIRTLGTVGDKDITVAAYQRNLDQQIR 59 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 +S + G ++ ++A++ G+D++ L +V TLD +G+ A V+ I+ F Sbjct: 60 ALSAQFGTQISFQQAQAFGIDRQALSQVVQTRTLDNEAARMGISAGDLAVFDRISAIGAF 119 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 F+ D + L + G +E E+ + L+RT + V G+ + D R+ Sbjct: 120 QSA-GGFNRDTYRLVLQQSGQSESEFEAEIREDLARTLLQAAIVSGVPGAAASADALVRY 178 Query: 186 YFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E R V + ++ + A ++A +T ++E D + PE + I+Y + Sbjct: 179 VAEARDVTVLRVSADMLTAPVPGATDADITAFYEANGDEFLLPEAREITYAWMTPAMIQD 238 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQ 303 ++E+++ ++ Y+ + PE R VE+L + + A A L G F L E+ Sbjct: 239 QMEVTDLAIETLYQDRIADFVQPERRLVERLNYADPAAAQLAGGRLASGDATFDALVTER 298 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G +L+D+ +G ++ +P + AD++F+ A GD S G + V+ + + V+ Sbjct: 299 GLTLADVDMGDLGRDELP-ANTADAVFT-ATPGDVVGPFPTSLGAALFRVNAVLNAQEVT 356 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 E D+ ++ A + +D+ R+ + LA G ++++++ R +V L + + Sbjct: 357 LDEASDDLRAELAAEAARSVINDDFDRITDLLAGGATLEDLAERTDLV---LGQISWTPD 413 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 G +AA + P L DG +++ PAR L+++ Sbjct: 414 VTDG--IAAYDNFRAAAEALSEGAFP----ALEVLSDGGVFALRLDSVTPARVPPLQDIR 467 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 DV W+ + + ++A ++ + LG + + + R Sbjct: 468 ADVAARWQLQAQQDALLARAAEIAADL-----TADTDLAALGMTPRVESNLTRRSFVEG- 521 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQEKDKFIS---YLTQMMN 599 VF+ + NG V + +T++ + + S + + Sbjct: 522 MPEGFNDAVFALAPGEARVEDAGNGALIVRLDAITDADPTATDQAAQRASISDSIAAGIA 581 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQ 624 +DL D+ + ++ +T++ + Sbjct: 582 QDLFDAYVQAVQQATRITINQATVD 606 >gi|298486267|ref|ZP_07004330.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159274|gb|EFI00332.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 627 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 102/643 (15%), Positives = 227/643 (35%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G ++ + + D + D++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + I ++ F + + S +T+ L + Sbjct: 415 AQDLGMKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + + R + + +F P K P +G +V Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESNAKIE 625 >gi|289627508|ref|ZP_06460462.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649941|ref|ZP_06481284.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868371|gb|EGH03080.1| periplasmic folding chaperone [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 627 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 227/643 (35%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G ++ + + D + DS+++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDSLYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + I ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + + R + + +F P K P +G +V Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESNAKIE 625 >gi|110680386|ref|YP_683393.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter denitrificans OCh 114] gi|109456502|gb|ABG32707.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter denitrificans OCh 114] Length = 612 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 117/594 (19%), Positives = 246/594 (41%), Gaps = 26/594 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 T+ + G + +P + +QE+ + Q+ V+ ++A+ +GLD+ +L LV+ Sbjct: 32 SGNIRTIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVAT 91 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 +LD +GL + I F G + +F + + L + G++E E+ Sbjct: 92 RSLDHETSQLGLSIGDEELRRRILDISAFQGINGEFDREGYRFALEQTGLSEAEFETQLR 151 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215 + ++RT V G +GG+ +D + E RS + +L+ + P +AVL Sbjct: 152 EEVARTIVQGAVLGGIAMPETYVDTLVNYIGEQRSFTWSLLDASDLATPLGAPDDAVLRA 211 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++ D + PE K+I+Y +E+ + L+ Y + ++ PE R VE+L Sbjct: 212 HYDDNIDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAQQSAEFNQPERRLVERL 271 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 F +++ A +A +L G F L +G +L DI LG S+ + + +F+ A Sbjct: 272 AFLDRQSAQQAADALAAGDSFDDLVRGRGLALEDIDLGDVSEAELGEAGAG--VFA-ADV 328 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + G + V+ + + F++ + Q+ +AS V + ++ L Sbjct: 329 GAVVGPFPSTLGPALFRVNAVLAAQETPFEDAIDLLRPQLAADRASRLVAAQAESFDDLL 388 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G ++++++ +V + + +E+AA P Q V P Sbjct: 389 AAGATLEDLASETDMVVAQIDWTAQST-----EEIAAYPTFRQAAAAV----GPRDFPEI 439 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 +L DG +++ +P R +E+ ++ W+ +TA+ ++ + V + G Sbjct: 440 ASLDDGGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAAQVG-LLENGS 498 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 +F D LG + + R D + + VF+ V K IE+ + ++ + Sbjct: 499 SFAD----LGLDAIVEENLIRSDFVPRT-PPGFLEDVFAMEVG--KAQVIESDAAVILVR 551 Query: 576 VTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + + +Q + +D+ + + + ++ +Q Sbjct: 552 LDAVAPPAADGDAAALRTQLEQQASQQLARDIFEVFANDVVLRADPQINQQALQ 605 >gi|71737764|ref|YP_273939.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558317|gb|AAZ37528.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 627 Score = 342 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 229/643 (35%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G +S L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDSAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R + L ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTRDFASLTLPAD--TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+++ +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G ++ + + D + D++++L K + + Sbjct: 296 QRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K + ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + I ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GITANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + + R + + +F P K P +G +V Sbjct: 526 QDGRDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|330878776|gb|EGH12925.1| periplasmic folding chaperone [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 627 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 104/643 (16%), Positives = 235/643 (36%), Gaps = 44/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +D R + R D+ L P+ ++ + ++++ + +PE + YI Sbjct: 180 AQVDAFARLEKQTR--DFASLTQPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAF 287 K+ + +++LQA Y+K E R ++ + + +E Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKVEEIQ 295 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 Q L KG+ F LA+E + S G F+ + + D + +++++L K + + Sbjct: 296 QRLAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKD-QVSQPVRT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + Sbjct: 355 DFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQP 414 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGS 462 ++ + G + + ++ F + + S +T+ L + Sbjct: 415 AQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGSNSNTLELDPET 467 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+ KE + + LE V + ++ +K L+ ++GK K Sbjct: 468 VVVVRSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGL-RDGK-IPLAAK 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP------IENGLSYVV--F 574 G + ++R + + +F P + K P +G +V Sbjct: 526 QDGRDWKSMEAVSRS---QEGVDPQVLQALFRMPKPVAKDKPEFASITAADGSFVIVRLN 582 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V + EK ++ +L + + A L+S+ + Sbjct: 583 GVNQAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625 >gi|169633493|ref|YP_001707229.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter baumannii SDF] gi|169152285|emb|CAP01195.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter baumannii] Length = 621 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 109/635 (17%), Positives = 221/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293 K ++ EL+ Y K E R V+ ++ D A Q L K G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + +VK K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|258542318|ref|YP_003187751.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-01] gi|256633396|dbj|BAH99371.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-01] gi|256636455|dbj|BAI02424.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-03] gi|256639508|dbj|BAI05470.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-07] gi|256642564|dbj|BAI08519.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-22] gi|256645619|dbj|BAI11567.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-26] gi|256648672|dbj|BAI14613.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-32] gi|256651725|dbj|BAI17659.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654716|dbj|BAI20643.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO 3283-12] Length = 639 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 124/634 (19%), Positives = 256/634 (40%), Gaps = 21/634 (3%) Query: 1 MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFIN 58 M+ +R+ +W+ ++ +V+F+ F+ WG+ D + + V VG+Q+V Sbjct: 1 MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSADDLAT 60 Query: 59 SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + EL I++++G S+ A + +IL L+ A L + + + V Sbjct: 61 ALQSELPTIARQMGVTDPSQIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVVVPDSAVR 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 E+ P F G + +F F +L G+ E+ ++D L+ ++ S+ Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLRDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 +L + + + R VD++ + P P +AVL +++ + +R PE + ++ Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFDAQPTPKAPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 I + +++ Y++ K +Y PE R ++ + +Q +A + K G + Sbjct: 241 LSPQTVADSITLGEADIKRIYDEQKSRYDVPETRDIQLITLQDQAQATAIANAWKVGGNW 300 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + + K + + + + IP +L +IF + G + + G+ + V+ I Sbjct: 301 QAI-QNSAKDAAAVEMPNARPSTIPSATLRQAIFQAPE-GQVSGPLKTESGWAVFRVTKI 358 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--D 414 T +++ KKDI +Q R A E ++L++ LA G +D I V+ Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALA-GKGLDAIPADLGAVAAAGT 417 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 L A+ +E ++ ++F + P ++ V PD S V++ + PA Sbjct: 418 LDAQGMTADKEPAPLPASGKLREAIIHQIFTQ-KPGARATLVDGPDNSSFAVEVDTATPA 476 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG-KNLGASLLTTNQ 533 R E+ DV W+ + +A L L KN + + N + +T + Sbjct: 477 APRTFEQAHADVLAAWQAEARKHAANEQATNLYLAT----KNKQALATTNAPGAQMTRDA 532 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDK 589 NK + + + E+ ++V VT + P + Sbjct: 533 AFSYAKPNKNIPDALMDYLPRMQPG--QAVMAEDDGHFLVAVVTKLFVPNPPAPADGVQR 590 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L Q + DL+ S + L + +++ + Sbjct: 591 LKDSLAQADSDDLVASYVEALSKRTPPHINERAV 624 >gi|260555138|ref|ZP_05827359.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|260411680|gb|EEX04977.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii ATCC 19606] Length = 621 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 110/635 (17%), Positives = 222/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + A SN T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293 K ++ EL+ Y K E R V+ ++ D A Q L K G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + +VK K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPEPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|239501895|ref|ZP_04661205.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB900] Length = 621 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 110/635 (17%), Positives = 222/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + A SN T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293 K ++ EL+ Y K E R V+ ++ D A Q L K G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETQANQIPSFEAEKPLLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + +VK K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Methylibium petroleiphilum PM1] gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Methylibium petroleiphilum PM1] Length = 640 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 106/647 (16%), Positives = 238/647 (36%), Gaps = 52/647 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E +R +R + I ++++F F+ +G+ G++ V V + + + + Sbjct: 1 MFEFVRSHTR-LLQFILVLLVFPAFVFFGVQGYTGMSEGNAVVAKVAGTSITQAEWDAAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++ + + V+ + + ++ LD LV + + + L A R+ A Sbjct: 60 RNQVERLRAQSPG-VDLKLFDTPEAKQRTLDALVRERVMLVAADKLHLTASDERLQRVFA 118 Query: 121 RSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D + D LA +G++ +++ + L+ V+ G + + Sbjct: 119 SDPQLAFLRKPDGSLNAD----VLAAQGMSARQFEQQLRQDLAMRQVLQGVSGTVLAPSR 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAPEYKRISYI 235 A + R V + + ++A + +++ + + PE I Y+ Sbjct: 175 PTSTALDALLQQREVRIARFEAQKFVTKVNVTDADIEAYYKDGRHAAEFETPEQASIEYL 234 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---------- 285 + D+ + + +S+D+L+ Y +N+ +Y +PE R ++ +K A Sbjct: 235 VLDLDAIKSGLTVSDDDLRKYYAENESRYVAPEERRASHILIKAEKGASAEQREKARTKA 294 Query: 286 ---AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 ++ K KF +LA+ + G ++ L F++ + D+ F+L K G Sbjct: 295 ATLLAEARKDPAKFAELAKKNSEDPGSAVQGGDLDFFARGAMVKP-FEDAAFAL-KPGQL 352 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL- 397 + V+ FGY + ++ ++ +F+ VK +I N+++ A + E + + Sbjct: 353 SEVVESDFGYHVILLTAVRGGEKKAFESVKAEIENEVKQQLAQRRYAEAAEIFSNTVYEQ 412 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 S+ + + K+ V + + L +F + +K +T A Sbjct: 413 ADSLKPAAEKLKLTVRTASGVARTP----AQGTTGALASPKFLEALFAAETLRNKRNTEA 468 Query: 458 LPDGSYMWV--QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + G V +I E P+R L EV V++ ++A +A + + K G Sbjct: 469 VDLGGSQLVAGRIVEYAPSRKLPLAEVKDRVRERVVVEQSAALARKEALARLAAW-KGGA 527 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVV 573 + + + I V + + + Y V Sbjct: 528 EPEGL----------EPAMTVSRGRQQELPPALIDAVMKASPAPLPSWTGVDFGDEGYAV 577 Query: 574 FKVTN--SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +V + + + Q+ ++ A LK +Y V + Sbjct: 578 VRVDKLLPRDAAAGDDKRLQQQYGQIWGAAEDEAYYAALKERYKVKI 624 >gi|332529107|ref|ZP_08405071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] gi|332041330|gb|EGI77692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] Length = 647 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 106/656 (16%), Positives = 242/656 (36%), Gaps = 54/656 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E +RK ++ +A + ++++ F++ G+ V VG+ ++ + + Sbjct: 1 MFENLRKHNKILMA-VLVLLIVPSFVLVGIDGYTRMTQKDRVVAHVGKIEITQGEWDAAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E + Q + +++ S + +L+ ++ L Q D L R++ E+ Sbjct: 60 RSETDRLRQMMP-NLDARLLDSDAARRGVLERMIRERVLQQAALDAQLNVSDARLFQELQ 118 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P K + + + LAR+G++ + L+ + G +N Sbjct: 119 TIPAISQLRNAQGKIDMEAYQALLARQGMSPAGFEAQLRADLAVNQIQSSVTGTAVQTNT 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D A + E R V S A L +++ + ++APE RI YI+ Sbjct: 179 SADLALDAWLERREVQVARFTPADYATRVQVSEADLQAYWQANQGLFQAPEQARIEYIVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------- 290 D+ K+ ++ ++L+ YE+N ++ PE R ++ K+A A + Sbjct: 239 DIDALRKEARVNEEDLRNYYEQNVDRLSGPEERRASHILITAAKDAPAAERQKAREQAQA 298 Query: 291 -----------KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335 + K F +LA + + LG F ++ + + ++ F+L K+ Sbjct: 299 LLAELRKAPANAQAKLFAELARKHSQDPGSASRGGDLGYFGRKAMT-LPFEEAAFAL-KQ 356 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + V+ FGY + V+ IK ++ E++ + ++R +A + E + + Sbjct: 357 GELSDVVETDFGYHVITVTGIKKPKAKTYAELRPSLEAEIRSQQAQTRYAEAAEAFTNGV 416 Query: 396 AL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 S+ ++ + ++ + + + + +LL VF D +K + Sbjct: 417 YEQPDSLKPVADQLRLSIQTATVSREPAQVT--ADAQGVLTNARLLSAVFSDDAIQAKRN 474 Query: 455 T--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 T V + ++ + +PAR L EV V++ + + A+ + + Sbjct: 475 TEAVEISPSRLAAARVVQHLPARTLPLAEVQAAVRERVVSARAAQLAREDGQAKLAAWK- 533 Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--- 569 A L ++R N + V ++ P+ G Sbjct: 534 --------ATPAQAKLGAAEVVSRDQARN--LPRALLDAVLRADLQSAATNPVWVGTDLG 583 Query: 570 --SYVVFKVT----NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 Y++ +V + ++++ Q + ++ L+ + + Sbjct: 584 EQGYILARVNRRIERAPAVEPGQQNQQRLQYLQWWTQAENEAYYQLLRQRLKTRID 639 >gi|219871319|ref|YP_002475694.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165] gi|219691523|gb|ACL32746.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165] Length = 624 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 103/642 (16%), Positives = 230/642 (35%), Gaps = 38/642 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + S WV KI ++ + F++ ++ ++V V +++ F + Sbjct: 1 MIEKMHEKSGGWVFKIIFALVSLSFVL--GGIGGGLIATDNSVAKVNGEEISQQVFSRAK 58 Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 Q+ +++ ++G + IL+ LV L Q+ + + ++ ++ Sbjct: 59 NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI SP F +D KF+++++ L G+ Y + + + V Sbjct: 119 EIVNSPAFQ-QDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + R V + S + ++E K N+ PE + YI Sbjct: 178 QQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFVNPEKLTVEYISI 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + KI+++N+++ Y+ NK KY + + + + EA+E Q+L KG+ F Sbjct: 238 EPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDFA 297 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 QLA+ + + LG +K + + D+ ++ G + I + I V Sbjct: 298 QLAKAKSQDKLSAAQGGDLGW-AKAGVFPKAFEDAA-NMLDAGKTSQPIKVDNAFHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412 V ++VK I + +R + + + S++ +++ ++ Sbjct: 356 LERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAFENSGSLEAVAKVANVLV 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-----DGSYMWVQ 467 + V A E++L +F + + ++ A+ + M+V+ Sbjct: 416 HKTDAFTR-------ETVPAELDNEKVLRVLFDSEVRQNGQNSEAIDLSDATNTKTMFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + +E + V++ K K + + KA V +K G + Sbjct: 469 VSHYQAENVQTFDEAKSAVEQAVKQQKALKVLEEKATTQVAALNKGETVEVAFGASEELV 528 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK---CFPIENGLSYVVFKVTNSKVGPV 584 + + VFS K VV + G Sbjct: 529 F----------AQAQITEPALAQAVFSMAKPAEKPTYQTARNTNGDVVVIALDKVSDGTA 578 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 E + Q L + ++ L+ + + V+ + + + Sbjct: 579 DEFKPLQAQFNQAERVVLRNDLLKDLRERAKIEVNQDFLDQL 620 >gi|184157984|ref|YP_001846323.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ACICU] gi|332874443|ref|ZP_08442346.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059] gi|183209578|gb|ACC56976.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter baumannii ACICU] gi|323517928|gb|ADX92309.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter baumannii TCDC-AB0715] gi|332737287|gb|EGJ68211.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059] Length = 621 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 109/635 (17%), Positives = 223/635 (35%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ + ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + A S+ T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------G 293 K ++ EL+ Y K E R V+ ++ D A Q L K G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + +VK K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTIANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|218461733|ref|ZP_03501824.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli Kim 5] Length = 432 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 143/435 (32%), Positives = 245/435 (56%), Gaps = 3/435 (0%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I + +YI +K+ R+ +V G L+D K + E+RSVDY++L N ++ I Sbjct: 1 IRQDDYIQERSKVAVRSQIVDAVSNGFTAPKTLVDAMKLYGGESRSVDYLLLTNANIEPI 60 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 P++ VL WFE K YRAPEY++I+Y+ + +++D+++ ++K K+ Y Sbjct: 61 KAPADDVLASWFEGVKQRYRAPEYRKIAYLKLQPADIADAATVTDDQVREAFDKGKDSYR 120 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 +PE RT+EQL F ++ A A +LK G F QL +QGK+ SD+ LG F+K+ +PD ++ Sbjct: 121 TPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAV 180 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 A++ F+++K G TPV+ GSFG VI ++NIK +F EVK++I Q+ ++ AS++V Sbjct: 181 AEAAFAVSKDGGTTPVVDGSFGPVILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVI 240 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 + ++E+ A G ++++I+ + K+ ++ + VD G D GKEV IP K+QLL F Sbjct: 241 NVHDQIEDLRAGGATLEDIASQLKLNAVTIDAVDATGADKDGKEVKDIPVKQQLLGEAFK 300 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + + + + Y+W ++E P RDR + EV +DW + E++ KA++ Sbjct: 301 TEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKAELAKKADE 359 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565 L + K G DI LG ++ + + I R ++ G G+ FSGP++ V Sbjct: 360 LKAQAQK-GTALADIATPLGIAVESKSGITR-STDDPVLGRAGVKAAFSGPLDTVASAVG 417 Query: 566 ENGLSYVVFKVTNSK 580 + + ++ KVT Sbjct: 418 ADPSTQILMKVTEVN 432 >gi|254439696|ref|ZP_05053190.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307] gi|198255142|gb|EDY79456.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307] Length = 619 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 114/623 (18%), Positives = 238/623 (38%), Gaps = 30/623 (4%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 ++ + I L +LFV + +G S ++ +VG + + + + ++ + Sbjct: 10 KTKNFFVWIILGLLFVGLMGFGASGL---SGNLQSIGAVGDKTLSAQRYFQELQTQIRIG 66 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S + G ++ A+S L + L +V+ +LD +GL V ++ F G Sbjct: 67 SSQAGRTISFPEAQSAQLPDRALQIVVAERSLDNEAAVLGLSVGDSVVSQQVLGDLNFRG 126 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 D F + L+R G+N +EY + +R + G+ D +F Sbjct: 127 FDGTFDRTTYRETLSRNGMNVREYETGLREGAARALLQSAVYAGVPDPATYGDTVAKFVR 186 Query: 188 ENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 E R+ + L + + +PS A L ++ D Y + E + + + + + Sbjct: 187 EGRTFTWAPLTATDIEITLPEPSEADLQAHYDANPDIYTSLETRVLRFAWITPAMIQDDM 246 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGK 305 + DEL+AEY+ +++ E R +E+L+F N A A ++ G F QL ++G Sbjct: 247 PVDEDELRAEYDDRIDEFVQAERRLIERLIFSNDAAAQTALDAINAGDTTFPQLVADRGL 306 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 SL D+ G + + D +F+ ++ GD + G + ++ + + +F+ Sbjct: 307 SLEDVDGGDVTLAELGDAGAG--VFA-SQTGDVSGPFMTDLGPALFRMNAVLAAQNTTFE 363 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 + D+ +A +++ + LA G S+D + + ++ +L + D Sbjct: 364 DALPDLREDQSAARARRVIEDQIDPITNLLAGGASLDNLVDQTDMILGNLDYTNQTTND- 422 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 +AA + D P D L DG V + E L+++ Sbjct: 423 ----IAAYAAFHDVAATQDVSDFPELAD----LDDGGLFAVDVIEVRAPALIPLDDIREQ 474 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 V W+ +T V + A + ++F L + + N I R N Sbjct: 475 VVAGWEAQETTAAVIAAAESKQAQLMSAVQDFA----FLDLNAIQDNNITRRGFINGA-P 529 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD------KFISYLTQMMN 599 ++ VF + V+ P NG ++ ++ ++ + + Sbjct: 530 RSFLTDVFEMAIGDVQVLP--NGAGAIIVRLDAITAANTSDEAYTAEVAAVAETAGEGIA 587 Query: 600 KDLLDSVIAYLKSQYSVTVHDNL 622 D+ + ++ + V V++ Sbjct: 588 LDIYELYSRTVQLRTDVQVNEQA 610 >gi|117925439|ref|YP_866056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp. MC-1] gi|117609195|gb|ABK44650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp. MC-1] Length = 636 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 123/646 (19%), Positives = 254/646 (39%), Gaps = 30/646 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++RK++ +WV KI L+++ V F +WG+ L + + V++V S+ Sbjct: 1 MLNVMRKSANSWVIKILLILIAVSFSVWGIEG-LRNAGRDTPVLTVENWSASQGYIRQSF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + L Q++G + L ++ L +V + +GL + IA Sbjct: 60 DRFLREQKQRLGNLPLDNPMIRQQLRQQFLQRMVDEQLMLHSAMQMGLTLSPKGLQKTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F K KF ++ L + ++ K + +R + LLLD Sbjct: 120 EDPTFQLK-GKFDDALYRQLLRQNRLDPKTFEQDTLVRHARAHLAQGLTQVATTPTLLLD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 A + E R V ++L+ + ++ DP + L + E +D Y + ++ Y+L D Sbjct: 179 DALKQESEKRRVALLMLDQATLASVDDPGDEALRAYQENNRDAYSIKQRVKVRYLLLDAE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------KEADEAFQS 289 ++++ ++ A Y+ NK Y + E R + ++ + K+ ++A Q Sbjct: 239 SVRDELKVDEAKIIAYYDDNKPLYKTLESRKLRHILAKFKAGDATAKAAAQKKIEDAKQR 298 Query: 290 LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + G+ F ++A+ E + LG F + ++ F+L + G + V+ F Sbjct: 299 IANGESFAEVAKLLSEDVTASQGGELGVFQRGGGLVERFEEAAFTLPE-GKVSEVVESPF 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ + V +I P+ T SF++VK +IA Q+ A E + LE+ LA S+ I + Sbjct: 358 GFHLILVDHIDPAGTRSFEQVKPEIAEQLFQEGAGEAIYSKSIALEDMLATADSLATIGK 417 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + ++F+ D +E V + V L + Y + Sbjct: 418 ELNLRFKETGWIEFSKLDETVSI-----EREAKFHEVAFSTLKGERSTLVELANNRYFVL 472 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN-LG 525 ++ + A + L EV + ++ K + + L+ G ++ ++ K+ Sbjct: 473 EVTDHEDATLKPLAEVRAALLAAYRQEKAQTQAQELMDN-ALKALNSGSSWEEVAKSHAP 531 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPV 584 MD E+K + F ++ + I G + K+ G V Sbjct: 532 FQAQAPAPFTAMDKESKV-PANVRQAAFRIALDKPIYEKVISEGNHRYILKLLEVTPGTV 590 Query: 585 Q----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + T M+ ++ ++ +A+ + ++ + Sbjct: 591 DTDMLANSQLQAMFTNMLGNEMREAFMAWRRKHAEISYDPKVFNNL 636 >gi|315499883|ref|YP_004088686.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis excentricus CB 48] gi|315417895|gb|ADU14535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis excentricus CB 48] Length = 642 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 127/634 (20%), Positives = 265/634 (41%), Gaps = 18/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ R+ +++ KI + L + F ++G+ D LFS S VV G ++ + + Sbjct: 1 MISSFRQFTKSLTFKILMAALILSFAVFGMHD-LFSRPSSRNVVDAGDRQTTTDDYRRQF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q Q+ G + E A GL +I++ L ++ ++ +GL V +IA Sbjct: 60 DQWKTGAEQQSGQTLTYEDAVKQGLHVRIMEELADMDSVSAWLVKVGLRPSAKVVTDQIA 119 Query: 121 RSPLFHG-KDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + P+F KF + LA + ++E ++ + ++ + V G++P + Sbjct: 120 KYPIFFDSITGKFDKAKYQQELATQMKMSETKFEQIISDDIANRQFIEASVAGLKPPRIY 179 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 F E R +V+ ++ P++ L ++++ K+ R PE ++ + + F Sbjct: 180 AALQSAFASETRDTTLLVVTPDNIEKPGQPTDVELKKFYDDNKERLRRPELRQFTVVSFA 239 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + K+ + EL+ YE ++ +PE RT Q+ P+QK A+ Q+L+ G Sbjct: 240 PGDFASKVTVDEAELKKLYEFRRDTLSNPETRTFVQVTVPDQKAAEAVAQALRSGTDPKT 299 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A+ ++ I+ + K + D +AD+ F+L K+G+ + I GS G + VS I Sbjct: 300 AAKANKGTV--IAYDAKPKTAVADAKVADAAFAL-KQGEVSGPIQGSLGLAVVKVSGITA 356 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + F V+ + + + KA + + + E+ + G +++ + I+LP + Sbjct: 357 ASVTGFDTVRGQLEAEYKADKAKDLAYKASEVFEKERSAGADFLAAAQKAGVRVINLPPM 416 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G+ G+ P +L F + D L +G Y +++ E +P+ Sbjct: 417 TAEGQMGNGQPFQYAP----ILKAAFDQPKGGETD-VTELGNGEYFALRVNEVLPSEVPA 471 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L+ + + + W+ + V++K+ + K G++ + ++G + T + R Sbjct: 472 LDTIKPQMIQAWQQKTAGDRVAAKSEEAAARLRK-GESLEAVASSMGLKVETRAGLARQT 530 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 + G + ++FS V + N + VV KVT G ++ + Q + Sbjct: 531 APQQV-GPELTGRIFSAKNNEVFTARL-NEMVSVVGKVTAINKGEAAAVNQASAMTGQAV 588 Query: 599 NKDLLDSVIAYLKSQY----SVTVHDNLIQRYLD 628 L + ++ + + L Sbjct: 589 AYGLFQDLSFTMRKGARAAVKTKTNPDAAIAALG 622 >gi|83858361|ref|ZP_00951883.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633] gi|83853184|gb|EAP91036.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633] Length = 635 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 127/637 (19%), Positives = 250/637 (39%), Gaps = 16/637 (2%) Query: 1 MLEIIRKASRTWVAK-IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML +IR +R+ + + + +L F +WG+SD S+ V VG Q V S + Sbjct: 1 MLSLIRSLARSPIIGGMIIALLIAAFALWGVSDIFSGGGTSALV--VGPQTVSASEVQRN 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++++L I Q+ + E+A +GL ++ L++ +D + +GL ++ + Sbjct: 59 YERQLFQI-QRDNPQITREQADQMGLGDSVVRRLIAETAVDAKADQMGLTISDDTLFETL 117 Query: 120 ARSPLFHGKD-NKFSHDVFVSRLAREG----INEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 P F N+F + S L G + E+++ T L R V +GG+R Sbjct: 118 RSIPAFQNPFTNQFDPGTYASILRENGYRGSMAERQFESDITSELRRAQFVAAALGGVRA 177 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ + + E RS+ + L V P + LT + + + E +R++ Sbjct: 178 PDIYAEIRAAYENERRSLRALFLRPVLVETPEAPDDETLTAFIGENARIFERAEQRRLTL 237 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + + + +E+S ++LQA Y+ + + P R++ Q P+Q+ A+ A L Sbjct: 238 VRITPTDLLRDVEVSEEDLQALYDYRLQNGELADPATRSLTQWPAPDQQTAETAAARLGA 297 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G+ + E G +++L +PD +A+ F + + G+ V G+ + Sbjct: 298 GESVASVVAELGL-GDEVALADVEAYQVPDAQIAERAFQM-QAGELAAV-ESQLGWRVLR 354 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + T F V+ ++ ++ A + + EE G +++E +R + + Sbjct: 355 IDAANDPDTPDFAAVESELRTELARDTAEGMMLDALGVFEEARGNGATLEEAAREAGLFA 414 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + V G + + +L F + D DG Y V++ E Sbjct: 415 ERIDFVGANGYSPDREPALTLLQNPDILSAAFAAQQGFATDLEGYGEDGGYFVVRVDEIE 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 PAR +L+EV D + W +T + + + G+ I +LGA + Sbjct: 475 PARLYELDEVREDASRFWVMRETDNRLQEVVDDVQARLD-AGETLDAIAASLGAGARVES 533 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFI 591 + + F ++Q F P +N + + V Sbjct: 534 AVLGREETAGPFNAQLVAQAFRQPEGGRFVSRADNQTTRALVLVDEVIAAEGGAVTQAQR 593 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + +T + D V L + Y V + +LI + L Sbjct: 594 NEMTGELRDDATQIVTNALINAYDVRQNQDLIDQALG 630 >gi|226953081|ref|ZP_03823545.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. ATCC 27244] gi|226836173|gb|EEH68556.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. ATCC 27244] Length = 623 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 111/636 (17%), Positives = 229/636 (36%), Gaps = 33/636 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + SV Q + ++ K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + ++ +D LV+ + L Q E +G+ ++ +A+ Sbjct: 61 NYKDQYLALVQG--DESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ +FS ++ + L G+ + I + + + + S L Q Sbjct: 119 QPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLIDNALVSKSDLQQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + S +T ++ K+K+ ++ + Y++ Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPAL 237 Query: 242 KEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------KK 292 E+ + +++ +LQ Y EK R V+ ++ + D A Q L + Sbjct: 238 LEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLINDVYAKIQS 297 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVI 350 G F Q A + + S + G Y P A D+ + K G + + +GY I Sbjct: 298 GMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKPVKTQYGYHI 357 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V + SF+ K + ++ TKA+ + L E + S++ +++ K Sbjct: 358 IEVQ-VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDSLEVVAQEVKA 416 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ A + + + LF K+ + + L +G +W+++++ Sbjct: 417 ARVE---SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQLANGDSIWIKVRD 473 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 PA + L EV T+VK K + +K ++ ++ + + + Sbjct: 474 YHPAGIKPLSEVTTEVKAKVVEQKAYKAAQAKMASILADFKTQ--PAAQVVAKSQVNFEN 531 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV------EMVKCFPIENGLSYVVFKVTNSKVG-- 582 R + FS P + N L V +S V Sbjct: 532 AGTFAR----SHGLKRAIERAAFSIPAPSKEGMWSATTAKLPNELVIVAVSNVDSSVASS 587 Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P +E + Q + +L+ AYLKSQ + Sbjct: 588 LPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADIK 623 >gi|326403424|ref|YP_004283505.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301] gi|325050285|dbj|BAJ80623.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301] Length = 628 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 116/630 (18%), Positives = 234/630 (37%), Gaps = 8/630 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +IR+ W+ + F VVL F+ WG+S + + S + +VG Q + + ++ Sbjct: 1 MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L + + + + L + A ++ +G+ A + ++ Sbjct: 61 QRTLNAYATQNSGR-EPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVF 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FHG D KF F + LA + ++ L + ++ G+ L+D Sbjct: 120 AIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAPAPLVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + R+V + L P+ VL +++ + + P + ++ Sbjct: 180 QIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVVVLSPA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +S E+ A+Y++ K K+ RTVE + + K A ++ K G + + Sbjct: 240 LIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKNAAALAKAWKGGADWAAMQ 299 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + + + + + +K + A G+ + + G+ G + V+ Sbjct: 300 KAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTKAVAGG 359 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 V I ++++ KA V L++ LA T++ ++ + + VD Sbjct: 360 DKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV-SVDR 418 Query: 421 AGKDVKGKE--VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G V GK + Q + + P + V+ P SY + + I + Sbjct: 419 EGMTVDGKPAGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRIIKPALKP 478 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 ++V DV DW + + A +L+ K GK G ++ T+ + R Sbjct: 479 YDKVKADVLADWTGAQVERQEEVAAAKLLTA-VKGGKTLAAAASAAGLTVTTSAPMTR-A 536 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQE-KDKFISYLTQ 596 K FS + G VV + K G + L Q Sbjct: 537 KPAKGVPPQLAQVAFSLKKGAPTMVQTQEGFVVGVVSDIAEPKPGSDAAFHQRVADSLGQ 596 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 M +D+L + A L+ + V ++ L+ + Sbjct: 597 SMQEDVLQTYAAALRQRDHVKINTKLLNQI 626 >gi|240949547|ref|ZP_04753887.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305] gi|240296120|gb|EER46781.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305] Length = 624 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 105/643 (16%), Positives = 239/643 (37%), Gaps = 39/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + KI ++ + F++ G+ L + S V V + + +F ++ Sbjct: 1 MIEKWHDRTNSLGFKIIFTLVSLSFVLGGIGSGLVATDDS--AVKVNGEGISQRTFTDAK 58 Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ ++ + G + + + ++ +L++L++ L Q+ + + L+ ++ Sbjct: 59 NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI F ++ KF + ++ L G+ Y + + + + + Sbjct: 119 EIVHDANFQ-QNGKFDNKLYQQTLRNAGLTTDGYAAIVREGMIFSQIEEGIINTSFDLPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + F+ R V + S L ++E +K PE + Y++ Sbjct: 178 QQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYEAHKKQLLTPETFTVEYLVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + EK+I+I+++++ Y+KNK ++ + + + N+ EA+ Q L G F Sbjct: 238 TPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFA 297 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ +LG P + ++ L + G + I Y I V Sbjct: 298 TLAKEKSTDKLSAAQGGNLGWTKAGTFP-QAFENAASQL-QVGQVSQPIKIDNAYHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412 + K + +VK I +R + + + + S++ ++ K+ Sbjct: 356 IDRKAENIIPLAQVKDKITETIRKELLASEYSTVARDMANSAFENSGSLEAVA---KVAG 412 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWVQ 467 +++ + V A E + +F D + ++ AL G M+V+ Sbjct: 413 LEIHKTSAFTQ----ANVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + R++ LEE TDV+ K K + + S A ++ EGKN G+ Sbjct: 469 VSDFQAEREKTLEEAKTDVEAMVKREKAEKALLSNAEANLVAL-NEGKNNISFGETQTLV 527 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584 + + VF+ P K ++ + G + Sbjct: 528 Y----------AQAQVQQPVLAKTVFNMPKPADKATYQIARNVKGDVIIVALDKVSDGTL 577 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 E + L + ++ L+ + S+ V+ +++ + Sbjct: 578 AEFKPLEPQFAEANRTILRNDLVKDLRERASIDVNAEFMEQLI 620 >gi|307544940|ref|YP_003897419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata DSM 2581] gi|307216964|emb|CBV42234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata DSM 2581] Length = 607 Score = 339 bits (870), Expect = 8e-91, Method: Composition-based stats. Identities = 116/639 (18%), Positives = 248/639 (38%), Gaps = 56/639 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFIN 58 ML+ IR S +W AKI + + V ++G L + +V V + +P Sbjct: 1 MLQSIRDRSASWGAKIIIGAVVVAMALFGAESLVGLLGGNDGDSVAKVNGESIPRQQLEL 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ + V E+ R L ++LD+L+S L Q+ E+ GL ++ Sbjct: 61 EVQRAIRS------GQVPPEQERE--LRSQMLDSLISERLLTQYAEEGGLHLSESQIDQL 112 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F +D KFS ++F +RL+ G + D + R + Sbjct: 113 IVNLPEFQDQDGKFSRELFRNRLSSAGFTPLAFRDQLRADMKRRQLQQGLAVSEFSLESE 172 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + RS + L + + + S L ++E + D+Y+ PE +++Y++ D Sbjct: 173 ERRLAALQRQTRSFRHHALTVDDLESRPEASEQELQAYYEAHADDYQRPEQVKLAYVVLD 232 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289 + ++ ++S +L+ + + R V ++ + +E Q Sbjct: 233 REQMAEQADVSEQDLRDAWNAEAAEAD----RRVSHIMVRFGDQRTRQEAEARLEEVRQR 288 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L G F LA E S LG S+ + + + ++ FSL + G + ++ Sbjct: 289 LADGASFADLAAEYSDDTSTSDEGGDLGVISRGFFGE-AFDEAAFSLGE-GQVSDIVETD 346 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G + V+ + SF+E + +A Q+ + S + +RL + + ++ Sbjct: 347 NGLHLIKVTEL---DRPSFEESRDRLARQVARKQVSTAFDDRAQRLIDESFAAEDLQSVA 403 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 + V + V+ + + ++ + F D + + L + Sbjct: 404 EELNLERKTTDWVSR-------QNVSGVLAEPGVMRQAFTPDVLEEGFNSEVIELDEDRR 456 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 M +++ + A LEEV + V + + KT E + ++A++L+ E + G+ Sbjct: 457 MVLRVLDHREATTLPLEEVRSQVVEAVQAQKTREALENEADRLI-EALRSGETPA----- 510 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSK 580 T ++R D + + F P + +G V+ + Sbjct: 511 --IDWQRTEGLSRQD--DTDLAQPVVDAAFRLPHPEADETVYGRAIDGQRVVLIALDEVA 566 Query: 581 VGPVQEK-DKFISYLTQMM-NKDLLDSVIAYLKSQYSVT 617 G V E+ + F++ + Q + ++ ++ ++ +L+ Q + Sbjct: 567 EGQVDEQSEAFVARMAQQLRSQAAVNGLLGFLREQAEIK 605 >gi|50084586|ref|YP_046096.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) [Acinetobacter sp. ADP1] gi|2623969|emb|CAA05330.1| putative peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1] gi|49530562|emb|CAG68274.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Acinetobacter sp. ADP1] Length = 622 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 99/636 (15%), Positives = 222/636 (34%), Gaps = 34/636 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E RK + W+ K+ L++ P + G+ + + +V Q + N K Sbjct: 1 MESFRKVIKGWLGKVLLILFLTPLALVGIEGYFGGGNKADVAKTVNGQDISKKDLENLTK 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + +++ L+ L++ + L Q E +G+ ++ +A+ Sbjct: 61 TYKDQYLSLAKG--DETLLNQSYIEENALNTLIARSLLLQQAEKLGISLSDAQIEKMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ KFS ++ + L G+ + I + + + S L Q Sbjct: 119 QPSFQ-ENGKFSETLYSNYLRSVGMTSQALIASLRQDHALKMLTSSVTDTALVSKFDLHQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + + +N + ++ K+K+ ++ + YI+ + Sbjct: 178 IAVLQTEQRTIHLASIKLDDYKKNINVTNQEIADYYNKHKNKFKQVASVDVDYIVVSPAQ 237 Query: 242 K-EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKK 292 ++ ELQ Y E R V+ ++ QK A++ + ++ Sbjct: 238 VSSAPAAVTEAELQQAYNAFVETQKKDAKRLVKHILITADGRSDAEAQKIANDVYAKIQA 297 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYV 349 G F + A++ S + G Y P + ++ SL K G + + +GY Sbjct: 298 GTHFSEAAKQYSDDTSSKNNGGVVDAYQPGIFSKDFDQAVESL-KNGQVSKPVKTQYGYH 356 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I V + S + K + +++ +K++ + RL E + ++D +++ K Sbjct: 357 IIEVETAQ-VKLPSLEAEKARLTAEIQKSKSANAYTDTINRLNEMVVSTDALDSVAQELK 415 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + ++ + + P + LF K+ + + L +G +WV+++ Sbjct: 416 GLRVE---SLNGVTLSTQHPLLSDPNVKAKLFNDDVKNGDRNASSNIQLANGDTIWVKVR 472 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 A + L V+ K +K ++ ++ + + G Sbjct: 473 NYHAAGVKPLATATAQVRAKLIEDKAFNAAQAKIQAVLNDFKTQ--PADQVVAKSGLKFE 530 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVGPV 584 + R ++ + FS V + + L V NSK Sbjct: 531 SAGTFTR----SQGLKREIERAAFSLTAPKAGMWSVATAKLPDELVVVGVSDINSKAADA 586 Query: 585 ---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + + + + LD YLKS + Sbjct: 587 LNPEQLQELGNLYQRFRGQQELDDYTQYLKSHAKIK 622 >gi|240851485|ref|ZP_04752236.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202] gi|240310003|gb|EER48295.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202] Length = 624 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 106/643 (16%), Positives = 238/643 (37%), Gaps = 39/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + KI ++ + F++ G+ L + S V V + + +F ++ Sbjct: 1 MIEKWHDRTNSLGFKIVFTLVSLSFVLGGIGSGLVATDDS--AVKVNGEGISQRTFTDAK 58 Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ ++ + G + + + ++ +L++L++ L Q+ + + L+ ++ Sbjct: 59 NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI F ++ KF ++++ L G+ Y + + + + + Sbjct: 119 EIVHDANFQ-QNGKFDNNLYQQALRNAGLTPDGYAAVVREGMIFSQIEEGIINTSFDLPA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + F+ R V + S L +++ +K PE + Y++ Sbjct: 178 QQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEYLVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + EK+I+I+++++ Y+KNK ++ + + + N+ EA+ Q L G F Sbjct: 238 TPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFA 297 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ +LG P + ++ L + G + I Y I V Sbjct: 298 ALAKEKSTDKLSAAQGGNLGWAKAGTFP-QAFENAANQL-QVGQVSQPIKIDNAYHIIKV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412 + K + +VK I +R + + + + S++ ++ K+ Sbjct: 356 IDRKAENVIPLAQVKDKITETIRKELLASEYSTVARDMANSAFENSGSLEAVA---KVAG 412 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMWVQ 467 +D+ + V A E + +F D + ++ AL G M+V+ Sbjct: 413 LDIHKTSAFTQ----SNVPAELQHEAVEKALFESDLRQTGQNSEALDVGDSTNPRTMFVR 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 I + R++ LEE TDV+ K K + + S A + EGKN G+ Sbjct: 469 ISDFQAEREKTLEEAKTDVEAMVKREKAEKTLLSNAEANLAAL-NEGKNNISFGETQTLV 527 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC---FPIENGLSYVVFKVTNSKVGPV 584 + + VF+ P K ++ + G + Sbjct: 528 Y----------AQAQAQQPVLAKTVFNMPKPTDKATFQIARNVKGDVIIVALDKVSDGTL 577 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 E + L + ++ L+ + S+ V+ + + + Sbjct: 578 AEFKPLEPQFAEANRTILRNDLVKDLRERASIDVNAEFMDQLI 620 >gi|148244746|ref|YP_001219440.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius okutanii HA] gi|146326573|dbj|BAF61716.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius okutanii HA] Length = 615 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 113/630 (17%), Positives = 262/630 (41%), Gaps = 32/630 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR ++ W++ + + ++ +PF ++G+S+ F+ + + V S + F++ + Sbjct: 1 MLVSIRNKTKGWISYLIIGLIIIPFALFGISEY-FTGASNIKVASFDGVDISKEEFLSEF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +++ + + L + IL+ +++ L+Q + E + I Sbjct: 60 NPQKRWLQKELDKKYDKKF--DFILKQSILNQMLNKHLLEQLSRKLSYETTTSELNNIIR 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + LF ++ +FS + + L G ++Y + L RT + + + L Sbjct: 118 ANDLFK-EEGRFSLEKYKKLLRLNGYTTEKYETIKLQELRRTQIKSNLLDSAFITPSQLL 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++ + R YI++ + + +++ K + APE +I +I ++ Sbjct: 177 RLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSVKDFYDNKKSLFFAPEQVKIEFIELSLN 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E KKI++S++EL YE +E + + E R + ++ ++ A + L G F++LA Sbjct: 237 EIAKKIKVSDNELFNFYENEQENFTTEEERQAQHILLTDELTAQKVVTLLDNGGDFVKLA 296 Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ + +LG F++ + +F++ K G+ + ++ FGY I ++NI Sbjct: 297 KQYSQDSGSKDDAGNLGFFTRGIMV-PEFEKKVFAM-KSGEVSDLVKSKFGYHIIKLNNI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K SF K++I + +A + ++L LA TS+++I + + L Sbjct: 355 KVKTLKSFDIAKQEILDLYIQKQAQKVFYNLTEQLA-SLAYETSLEKIVDQMDL---KLQ 410 Query: 417 LVDFAGK--DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + DF K +++ + + +L + + L M ++++E + Sbjct: 411 VSDFFDKRNTQLNQKIVTTAFSDMVLNK-------GENSEVLELSKDKLMVIRVREKLVK 463 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTTNQ 533 R + EV +++ T+ V + A +V K I Sbjct: 464 RQKSFSEVKSEINTHLMTLLAKTFVDNLAKNIVDLLVHNDKDTLEKIMIKNKLKWHRVGW 523 Query: 534 INRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDK 589 I R N+ +++VF+ P+ + +N + +V + K ++ + Sbjct: 524 IKRDSNK---VKTTIVNKVFALAKPINSKSSYSAQNLERGNAIVIDLLGVKTTDIKIVNA 580 Query: 590 -FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 L + ++ +++ LKSQ + + Sbjct: 581 VLEKSLLSFESNEVFSNILEMLKSQAEIKI 610 >gi|238026979|ref|YP_002911210.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1] gi|237876173|gb|ACR28506.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1] Length = 647 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 95/648 (14%), Positives = 231/648 (35%), Gaps = 45/648 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R R + + L+VL G+ S+ V SV +K+ + F +++ Sbjct: 1 MLDFFRNHQRLMMFLLLLIVLPGL-AFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ Q +G +++ + +++LD ++ L + + L A V + Sbjct: 60 RQQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALL 119 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +P D + + LA +G+ +Y + L++ + + Sbjct: 120 SNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQLTQQQLPSNLIDSAFTPKS 179 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + R + +VL A P++A ++ +++ +K + PE I Y++F Sbjct: 180 VARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVF 239 Query: 238 -DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEAD 284 + +++ Y+ N +Y + V + + +AD Sbjct: 240 TPATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKAD 299 Query: 285 EAFQSLKKGKK-FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 +K F Q+AE+ + LG ++ + D K G+ + Sbjct: 300 RLLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEIS 359 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ G+ I +++KP+ F EVK+ IA +++ A++ ++ + + Sbjct: 360 KVVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYAAKAFSDNSEGFSSSVYEKA 419 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ + + K+ L + + + L VF D + ++T + Sbjct: 420 KSLQPTADKYKL---TLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAI 476 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + + + + + PA L+ + V++ ++A+ + K Sbjct: 477 DVGNNTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKAT 536 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVV 573 L +I+R D ++ ++ + + + + Y + Sbjct: 537 ---------TGFLPAEKISRTQTLG--LPPDAVAAIYKVDPKSLPAYVGVDLGANGGYAI 585 Query: 574 FKVTNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 F+V Q+ + Q+ + ++ + L+++ V + Sbjct: 586 FRVNAIVAPAPADPQQLAAAQQQIAQVYAQSESEAFMKALRARAKVKL 633 >gi|254994931|ref|ZP_05277121.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Mississippi] Length = 630 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 129/637 (20%), Positives = 268/637 (42%), Gaps = 34/637 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67 R L + F+ L +S V VG + + +++ EL I Sbjct: 4 RNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYI 63 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 + ++ + R G+ + L +V L++F +++ L + + I P+F Sbjct: 64 ESLVHQKLSEDDMR-FGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQD 122 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182 K K F LA G+ E YI L + G S + Sbjct: 123 KSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQDV 182 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVH 240 R ++R+VD + ++ V + P+++ L + + N PEY+ Y++ Sbjct: 183 LRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSED 242 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ SNDE+++E + ++ + R V LVFP++ EA A++++K+GK F + Sbjct: 243 DALDEVTASNDEVESEIKNSELH----DQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ G ++ +++L + +KE +P + + +++F L +G+ + V G+ + + + P Sbjct: 299 KDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSKHPIS 356 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418 +++K+ +A ++ KA E ++ E ++ G S E++ K +I L Sbjct: 357 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 416 Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 D G+D GK E ++ P L + H V++ + +Y V + P Sbjct: 417 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGN-AYFSVIVTGVTP 475 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 +R R +E + + WK E+ A+ L + K G+N G +G + Sbjct: 476 SRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGENP---GSAVGIATKKNEN 531 Query: 534 INRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEK 587 I+R++ + + D + QVF + V I+ G + + P +E Sbjct: 532 ISRVNRKKGGSNYPEDLVDQVFEMRIGDVGEGVIDQGTNKIFIATLKDIKTPGQVNEKEL 591 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +F ++ T + ++++L ++Y V ++ L++ Sbjct: 592 KEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 628 >gi|88657679|ref|YP_507533.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas] gi|88599136|gb|ABD44605.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas] Length = 634 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 130/642 (20%), Positives = 278/642 (43%), Gaps = 31/642 (4%) Query: 5 IRKASRTWVAKIFLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62 I S+ + K L++L F+ +G S S + + +G +K+ + +++ Sbjct: 3 IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 EL I + + E+ + L+ L+ L +F + + L+ + I Sbjct: 63 ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NL 177 F ++ F F L+ G+ E+ YI+ K T ++ G + + Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYI 235 L+ Q + + R++D I ++ I+ P+ L + +E+ + N PE + I Y+ Sbjct: 183 LIKQILQNLHQARTIDVIEISPTT-NDISVPNIDELKKLYEEKRKSGNLTFPESRVIEYV 241 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D + ++ +E+ + + ++ E R + LVF + EA+ A ++L +G Sbjct: 242 TIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALNEGTD 297 Query: 296 FIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F + +L +I+L + K +P+ + + +FSL K+G+ +P++H FG+ I + Sbjct: 298 FDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHIIKIK 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 NI T E+ + IA ++ KA++ + + + + + + GTS+ EI+ + SI Sbjct: 356 NIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAESYNL-SIK 414 Query: 415 LPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 VD +GKD ++ + + ++ F L+K DG + V + + P Sbjct: 415 TANVDISGKDPSDNKIKMLETNYDAIVLAAFSA--QLNKPSNFTDNDGYFFSVNVTKIEP 472 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTT 531 +R++ +E + +W+ A+++S ++V++ K G + +I L ++ Sbjct: 473 SREKTFDESKEQLVYEWQHDLKAQKLSKLTQEVVIKL-KSGIDINNIDGVLLKPNQVVYR 531 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPV 584 N + +DN + + D I+++F + E + + K + N+ Sbjct: 532 NSVAAVDNPGQNYPSDLINEIFHLKKGEISKNYQHDISSSEQKMLIAILKDIKNADQVSN 591 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + + L + +IA+L +YSV ++ NLI Sbjct: 592 VDFKNIQEKIANDNLESLKNQLIAHLIKKYSVKINQNLIDNV 633 >gi|126668935|ref|ZP_01739876.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] gi|126626598|gb|EAZ97254.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] Length = 624 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 104/609 (17%), Positives = 230/609 (37%), Gaps = 26/609 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R+ ++ +AKI + +L + +WG+ + SG V +V Q + F+ Sbjct: 1 MLQDMRENAQGTIAKIIIGLLILSLSVWGMDAIIGGFSGEPEVATVNGQDITEREFLRVV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E ++ + + +L L+ L Q + GL + I Sbjct: 61 QLESQNRLSRMERP-DPSLLDEDQIRVDVLQALIEEQVLAQDADRQGLALSDADIDALIT 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F D +F+ D FV+ + G+ E+ D K + V ++ + Sbjct: 120 QMPQFQ-VDGQFNRDQFVTTVRNVGMGVGEFRDAMRKQTVVNQIRAGIVASGVVTSNSIT 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + R + ++ V + S + +++ + ++ PE +SY++ ++ Sbjct: 179 RLMKIQNQTRDFRLLNISASAVADQVNVSAGDIQAFYDSNPNLFQQPEQVDVSYVVLSLN 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKKF 296 I IS++EL Y+ + E R ++ + +AD Q L G+ F Sbjct: 239 ALADAIVISDEELLTYYQSREADLAR-EERRAAHILVEDTADADAVVERIQQRLADGEDF 297 Query: 297 IQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E G F+ + D + +++FSL + G + + SFG + + Sbjct: 298 AALAQELSIDTVSGEQGGDLGFAGRGVYDPAFDEALFSL-EPGTVSDPVRTSFGVHLIKL 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++I+ S + +V + + + +A E + L + +++ ++ + Sbjct: 357 NDIRRSDVPALADVAAQLRDDLSREQAREAYAQARTTLADSAYAADNLEGPAKDLNLELR 416 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQIKE 470 + G P+ L R +D L+ + L D + +++ Sbjct: 417 QADKITRNG--------GGEPFDHAGLVRQLFSEDVLNGGYNTELIDVADNRAVVARVRV 468 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A L+ V ++ + + KT ++++A+++ + + G++ +DI + S T Sbjct: 469 YREAEVLPLDGVEDAIRSNLEAEKTRTALAARASEMAAQL-QAGESLQDIADD---SWAT 524 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 ++ R E + + V G S VV + G V Sbjct: 525 YSEQPRSAPELGGGVMQTVYALPRPRAGDVSYGHTITGNSAVVIALDKVNEGEVNTGSTE 584 Query: 591 ISYLTQMMN 599 L + + Sbjct: 585 YVQLQEFLA 593 >gi|260550156|ref|ZP_05824370.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624] gi|260406911|gb|EEX00390.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624] Length = 621 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 105/635 (16%), Positives = 222/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ L++ P + G++ + + +V Q + + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGINGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + + Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQALIASLRQDHALKMLTSTFSDYALVSKVDVMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ P + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDTYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293 K ++ EL+ Y K E R V+ ++ QK A+E + ++ G Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKNAKRVVKHILITTDARDDAAAQKLANEVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + + + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVSSL-KNGQVSQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + SF+ K + ++ K + + L E + S+D + ++ K Sbjct: 357 IE-AETPANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLDAVVQQVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 I+ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKIE---SLNGVTLATQNPQLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + + K K + +K ++ E+ + + + Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVPFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ FS P V + N L V NS Sbjct: 531 AGVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAM 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLKQLQQLYRQSRGQQILEDYSEYLKSHAKIK 621 >gi|119476198|ref|ZP_01616550.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma proteobacterium HTCC2143] gi|119450825|gb|EAW32059.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma proteobacterium HTCC2143] Length = 640 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 220/643 (34%), Gaps = 43/643 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR+ S+ +AK + ++ + F ++G+ D+L +G + V +V ++ + Sbjct: 15 MLQNIRENSQGLIAKFIIGLIILTFALFGI-DSLVGNNGPAVVAAVNGDEISLAELEQGV 73 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E + +G + L +LD L+ L Q D + + I Sbjct: 74 SLERRRLLNYMGENADPSLLDDQRLRGPVLDRLIQQKLLLQAAADASVGVSDAALDQTII 133 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F +D KFS + + S L G + Y ++ L+ + G + L Sbjct: 134 AMEQFQ-EDGKFSPERYQSILRGSGYSTAFYKQLMSQDLTVAQLNSGISGSDFVISNELS 192 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + RS Y +L V A S + Q + D Y++ E + Y+ Sbjct: 193 EVSKIVGQQRSFRYFILPREKVAAQVIISEEEIQQHYNDNIDKYQSEEQVMLEYVEVKTA 252 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLK 291 + K +E + ++ EY + + E R V ++ ++ A++ + L Sbjct: 253 DFFKPVEADD--IEREYALEIAAFEADEERRVSHILIEITDDRDASEARQLAEQLAEKLT 310 Query: 292 KGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +A E + LG + P ++F LA + I G Sbjct: 311 GDTDFATIAREFSEDPGSSSDAGDLGFTMGDTFP-PEFEAALFELALD-QISEPIQTDAG 368 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y + + I+ F E I +++ A + + L + + + Sbjct: 369 YHLLKATEIRGVSPAPFSERGSVIEGRLQQAAAEAEFVNAVEDLRDLAFNSEGLTGPAE- 427 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 DL L + Q+L F + + + L ++ Sbjct: 428 ------DLSLTLKKSNFLSRSSATGSLANAQVLAAAFSSEVIVDGNNSDVLELAADHFIV 481 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V + + PA+ + L +V + + + A +E K GK +I G Sbjct: 482 VSVLKHEPAKAKPLSDVQPFIIAELSQQRATALSLELAAS-AIEAMKAGKEVAEIALEGG 540 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-----CFPIENGLSYVVFKVTNSK 580 I R + + + VF+ P + NG V ++ + Sbjct: 541 YEWQVQQNITRSSS---VVDTNLMVAVFAMPDIHNGEVRREAVALANGD-VAVVQLEEVE 596 Query: 581 VGPVQ-----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 G +Q E+ + S L + + + L+S+ +++ Sbjct: 597 EGSLQQFSTAEQRELKSQLQRNNADVSMSGFLRSLRSKADISI 639 >gi|94502167|ref|ZP_01308665.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65] gi|94425692|gb|EAT10702.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65] Length = 608 Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 102/629 (16%), Positives = 228/629 (36%), Gaps = 31/629 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ A+I + ++ + F ++G+ + G V +++ + Sbjct: 1 MLQAIRDGSKGIAARIIVGLIILTFALFGIESIVALGGGEDAPAEVNGEEITLLEVQQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + ++ G + L + + +L+ L Q + G+ + I Sbjct: 61 NAQKTRLQRQFGENFDPAMFDENLLRQAAVRSLIDQELLAQAATESGVYISDQDIDRLIV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +SP F + F + + G Y + + + V + G ++L + Sbjct: 121 QSPNFQ-VNGAFDAATYDLTIRSMGFTRMTYREAVRESIKTQQVQSAWQGTEFATDLEKE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + RS+ Y + + S+ + ++E + E + Y++FD Sbjct: 180 QLSLLENQIRSIKYKEYKSDNFKESVQLSDEDIQSFYEANDSRFMTTESVIVDYVIFDKE 239 Query: 241 EKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEAD----EAFQSLKKGKK 295 + +++ ++ DE+Q Y+ +E + E R ++ EA EA L +G+ Sbjct: 240 KLAEQVIVTEDEIQERYDAMLQESQENKEYRVAHIMLLSADDEARKTLSEAKSKLGQGES 299 Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAE + + LG F+ I + AD++ SL + G + ++ G + Sbjct: 300 FESLAERYSEDDTSKYAGGDLG-FASATIYEPEFADAVLSL-EVGAVSDIVETRDGLHLI 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + + + ++ E+K I + + + E + ++ + S+ ++ +V Sbjct: 358 KLVDTRQPEIAAYDEMKDTIEQNLVNEQIEVRYIEMLESFKDAVFASNSLQTVAEDFNLV 417 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 P G +A P F + + D + + GS + V++KE Sbjct: 418 VQTSPEFTRNA----GTGIAENPVIRDAAFSDVVLYESMVSD-VIEIDAGSAVAVRLKEH 472 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 ++ + LE V + + K E + A + L+ + G + + Sbjct: 473 NESKLKPLEVVKDQIVTTLTSQKAGELAKASA-EADLDALEAGGDIE--------GWIAV 523 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590 I R + +SQ F P + G ++ + +VT PV + + Sbjct: 524 EDITRNAEKVDSL---ILSQAFETPEGDSSLVAMRQG-NHALLQVTKVVRDVPVIDLESS 579 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + + + + K+ V + Sbjct: 580 AQKIERTNAVNQYQAYFNSFKNDSDVETN 608 >gi|301632869|ref|XP_002945502.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Xenopus (Silurana) tropicalis] Length = 638 Score = 336 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 97/547 (17%), Positives = 212/547 (38%), Gaps = 44/547 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IRK S+ + + +++ F++ G+ FS S S V V + S + N+ Sbjct: 63 MLESIRKHSK-FGMILLFLLVIPSFVLVGIDRNYFSES-SPVVARVNGHDIKQSDWDNTH 120 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E I + V+++ + L+ +V + ++ + + A R+ + Sbjct: 121 RMESDRIRAQSPS-VDAKLLDTPQARYATLERMVRDRVMTAAVQKMHIVASDARLASALK 179 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P D D + + + +G+ + + + L+ + V+G + + Sbjct: 180 DIPAIAALKRPDGSLDADAYRALVGAQGMTPEGFEANMRHDLAISQVLGGVLQSAFSTEG 239 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A F+ R + N + PS+A L +++ +++ PE + Y++ Sbjct: 240 QFKLAMDALFQRREIQVARFNAQDFAGKVAPSDADLQTFYQSRTAHFQQPEEASVEYLVL 299 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-- 295 D+ I +S D+L+ Y++N+E+ E R ++ ++A + K + Sbjct: 300 DLDAVRAGITLSEDDLRTYYQENRERLAGKEERRASHILVNATQDAPAQERETAKARAQE 359 Query: 296 -----------FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F +A++ G + S LG F++ + D++FS+ +KGD + Sbjct: 360 LLAQVRQNPGGFAGIAKKNSQDSGSAPSGGDLGFFARGAMVKP-FEDAVFSM-QKGDVSD 417 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 V+ FGY I ++++K SF++ + + +++ +A + E + + Sbjct: 418 VVESDFGYHIIQLTDVKTPQPPSFEQARAKLEAELKQQQAQSQFTEAAEAFSNGVYEQAD 477 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ V V L +F + +K +T V Sbjct: 478 SLQPTAEKLKLKVQTAQHVTRTP----APTVQGPLAHADFLEALFSSESIENKRNTEAVE 533 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA------------EEVSSKANQ 505 + G + +I + PAR +EV V+ + K E + +A + Sbjct: 534 VGPGMRVSGRIVQYAPARTLPYDEVRDRVRTMFVAEKAQGYAVVKVNRVQPREATKQAEE 593 Query: 506 LVLEYSK 512 + + Sbjct: 594 EAAQRQQ 600 >gi|114771096|ref|ZP_01448536.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255] gi|114548378|gb|EAU51264.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255] Length = 624 Score = 336 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 126/605 (20%), Positives = 264/605 (43%), Gaps = 27/605 (4%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 ++ S S++ VG + +P +S+ S + + IS++IG + S+ + GL + Sbjct: 29 IASGGVDGSRISSIGKVGEEPIPVTSYAQSLRNTIQNISRQIGRQLTSQEISAYGLQSEA 88 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L+N+VS A L + + + V EI +P F D KF + + L G++ K Sbjct: 89 LENVVSSAALSNEAKRLKISVGDDLVAEEIIATPTFTSVDGKFDKEAYEFALENSGLDTK 148 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DP 208 EY K ++R+ + G G + + +F E RS D+ ++ + + A +P Sbjct: 149 EYELQTRKAIARSLIEGAVASGTKTPSSHAMTLIKFAREERSFDWASIDKKLLSTQAINP 208 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + L ++K Y AP ++++Y+L +I +S EL+ EY+ +++ P Sbjct: 209 TIDQLKAHYDKNNILYTAPLSRKLTYVLLSPEMLADRIVVSQSELKDEYKSQPDRFNKPA 268 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327 R +++++F + K A L K + F ++AE++G + +DI LG K + D + D Sbjct: 269 RRIIDRIIFDSVKTARTVKDQLDKEEVSFTKVAEDRGLTQTDIDLGDIEKGQL-DKDIDD 327 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 +F+ ++ G I + G + ++ I SF + +++ + ++ + + E Sbjct: 328 LLFNASEVG-IYGPIDTNLGPALFQINAIIDPQNTSFADAAEELTAEYVSIESRKLINEM 386 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +++ LA G +++EI++ +++L + + G +AA +V Sbjct: 387 ITDIDDLLAQGLTLEEIAKE---TAMELEKISYDSTTENG--IAAYDGFRAEALKV---- 437 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 L DG +++ + I R E V V DW + + + A+ L+ Sbjct: 438 KIGGFPELRELSDGGVFALRLDDLIEPALRPFETVKDQVATDWSASEDKKSLLKLADTLI 497 Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567 ++ G+ F +L + + + I R + + ++FS K I+N Sbjct: 498 IKLDN-GETFE----SLNLNAESVSSITRNKYIDGI-PAQLLEELFSNKTG--KTSKIDN 549 Query: 568 GLSYVVFKVTNSK--VGPVQEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 G + ++ ++ + E + +S L+ + DLL + LK + V ++ N Sbjct: 550 GDTVLLARLNDISEFNSETDESKELLSQVGIQLSNQVTGDLLRLFASALKDRDGVILNQN 609 Query: 622 LIQRY 626 + + Sbjct: 610 AVNQI 614 >gi|255004191|ref|ZP_05278992.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale str. Virginia] Length = 630 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 128/637 (20%), Positives = 267/637 (41%), Gaps = 34/637 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINSWKQELGMI 67 R L + F+ L +S V VG + + +++ EL I Sbjct: 4 RNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYI 63 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 + ++ + R G+ + L +V L++F +++ L + + I P+F Sbjct: 64 ESLVHQKLSEDDMR-FGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQD 122 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV--GGMRPS---NLLLDQA 182 K K F LA G+ E YI L + G S + Sbjct: 123 KSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQDV 182 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVH 240 R ++R+VD + ++ V + P+++ L + + N PEY+ Y++ Sbjct: 183 LRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSED 242 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + ++ SNDE+++E + ++ + R V LVFP++ EA A++++K+GK F + Sbjct: 243 DALDEVTASNDEVESEIKNSELH----DQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 298 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ G ++ +++L + +KE +P + + +++F L +G+ + V G+ + + + P Sbjct: 299 KDLGTTVEEVTLRNVTKELLP-IEVRNTVFDL-NEGEVSGVFRSVVGWHVMKILSKHPIS 356 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSID-LPLV 418 +++K+ +A ++ KA E ++ E ++ G S E++ K +I L Sbjct: 357 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 416 Query: 419 DFAGKDVKGK-----EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 D G+D GK E ++ P L + H V++ + +Y V + P Sbjct: 417 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGN-AYFSVIVTGVTP 475 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 +R R +E + + WK E+ A+ L + K G+N G +G Sbjct: 476 SRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKL-KAGENP---GSAVGIVTKKNEN 531 Query: 534 INRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEK 587 I+R++ + + D + QVF + V I+ G + + P +E Sbjct: 532 ISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANKIFIATLKDIKTPGQVNEKEL 591 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +F ++ T + ++++L ++Y + ++ L++ Sbjct: 592 KEFQAHFTSSAISSIRRQLLSHLTNKYGIKINKKLLE 628 >gi|226944452|ref|YP_002799525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ] gi|226719379|gb|ACO78550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ] Length = 624 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 104/638 (16%), Positives = 231/638 (36%), Gaps = 37/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AKI + V+ V + G L S S S V K+ + Sbjct: 1 MLQNIRDNSQGWIAKIIIGVIIVLLALTGFDAILTSTSNSQNAAEVNGAKIGLAELNREV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++G ++ + L L L+ L Q E + I Sbjct: 61 ETQRRQLLQQLGKDFDASQLNEGLLRNAALSGLIERKLLLQGAEAADFAFSQNALDQLIL 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++P F D +F + F +A+ G + ++ + + + G ++ + Sbjct: 121 QTPEFQ-VDGRFDANRFDQVIAQMGYSRPQFRQMLEQEMLIGQLRAGLAGSGFATDREIG 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R + R D+ L PA + V+ ++E++ +Y E + YI Sbjct: 180 DFVRLERQTR--DFYTLTLSADPAQVTVGDEVVQAYYEEHASSYMTSEQLVVEYIELKRD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 ++EI +++LQA Y++ E R ++ + + +E + Sbjct: 238 AFFDQVEIRDEDLQALYQREIANL--AEQRQAAHILLEVNDKLSEEQAKAKLEELKARID 295 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KG+ F LA+E + G ++ + D + ++SL K+G+ + + FG+ Sbjct: 296 KGEDFAALAKEFSQDPGSADKGGDLGYAGPDVYDPAFEKVLYSL-KEGEVSSPVRSEFGW 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + +++ SF +K+ + ++++ + + E + LE + + + ++ Sbjct: 355 HLIKLLDVQAPEIPSFDTLKEKLVHELKAEQVEQAFVEASRDLENAAFEASDLAQPAQEL 414 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 + P G G+ + A Q+ F + + + L + + +++ Sbjct: 415 GLQIKVTPPFGREG----GEGLTANRQVVQIAFSPEVLEQG-NNSSAIELDPDTVVVLRV 469 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 KE ++V +++ AEEV + L+ E + + G + Sbjct: 470 KEHKKPEQIPFDQVAGKIREQLLKKHAAEEVRVRGEALLGELRQGHTPIDQAQQGEGWHV 529 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVG- 582 + + + + F P P G+ Y + ++T Sbjct: 530 VEAAA-----RDQEGVDPAILQSAFHMPKPAGTDKPSFAGVELPNGDYALIRLTGVSDPS 584 Query: 583 ---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +EK + +L + + L+S + Sbjct: 585 DALSEEEKGMYRRFLASRNGQQDFAAYRRQLQSVADIE 622 >gi|254450375|ref|ZP_05063812.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter antarcticus 238] gi|198264781|gb|EDY89051.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter antarcticus 238] Length = 619 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 113/621 (18%), Positives = 242/621 (38%), Gaps = 26/621 (4%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 ++ + I L +LFV + +G S ++ +VG + + + + ++ + Sbjct: 10 KTKNFFVWIILGLLFVGLMGFGASGL---SGNLQSIGAVGDKTLSAQRYYQELQTQIRLR 66 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S + G ++ A+ + + L +V+ +LD +GL + ++ P F G Sbjct: 67 SAQEGRTISFPEAQDAQVPSRALQIVVAERSLDNEAAILGLSVGDRVISEQVLADPNFRG 126 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + F + L+R G+N +EY + +R + G G+ ++ + +F Sbjct: 127 FEGTFDRTTYRETLSRSGMNVREYETDLREGAARALLQGAVFTGVPDPSVFGEVVAQFIR 186 Query: 188 ENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 E R+ + LN V + +PS L ++ + Y + E + + + + + Sbjct: 187 EGRTFTWAALNAADVDITLPEPSEDDLQAHYDANPNLYTSLETRELRFAWIVPSMIQDDM 246 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGK 305 + +EL+ EY++ +++ E R +E+LVF N + A A ++ G F QL ++G Sbjct: 247 PVDEEELRLEYDERIDEFVQAERRLIERLVFANDEAAQTALDAINAGDTTFPQLVADRGL 306 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 SL D+ G S + + +++F+ ++ G + G + ++ + + +F+ Sbjct: 307 SLDDVDGGDVSLAQLG--AAGEAVFA-SETGGVSGPFPTDLGPALFRMNAVLAAQNTTFE 363 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 + + +A +++ + LA G S+D + + +V +L D Sbjct: 364 QALPALRETQSAARAQRLIEDQIDPITNLLAGGASLDNLVAQTDMVLGELDFTSLTTDD- 422 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 +AA + D P L DG V + + P L+++ Sbjct: 423 ----IAAYAAFRDVAATQDVGDFP----ELAELDDGGLFAVDVIDVRPPALIPLDDIRDQ 474 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 V W+ +TA V + A + ++F L + + N I R N Sbjct: 475 VVAGWEAQETAAAVIAAAEAKQAQLMSAVQDFA----FLDLNAIQENNITRRGFINGT-P 529 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYV----VFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 + VF + V+ P ENG V + +S E + + +D Sbjct: 530 PTFLRDVFEMEIGNVRVLPTENGAIIVRLDAITAADSSDEAYTAEVASVAESAGEGIAQD 589 Query: 602 LLDSVIAYLKSQYSVTVHDNL 622 + + ++ + V V++ Sbjct: 590 IYELYSRTVQLRTDVQVNEQA 610 >gi|294650670|ref|ZP_06728024.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus ATCC 19194] gi|292823461|gb|EFF82310.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus ATCC 19194] Length = 623 Score = 336 bits (861), Expect = 9e-90, Method: Composition-based stats. Identities = 110/636 (17%), Positives = 228/636 (35%), Gaps = 33/636 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + SV Q + ++ K Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + ++ +D LV+ + L Q E +G+ ++ +A+ Sbjct: 61 NYKDQYLALVQG--DESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ +FS ++ + L G+ + I + + + + S L Q Sbjct: 119 QPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLMDNALVSKSDLQQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + S +T ++ K+K+ ++ + Y++ Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPAL 237 Query: 242 KEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------KK 292 E+ + +++ +LQ Y EK R V+ ++ + D A Q L + Sbjct: 238 LEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLINDVYAKIQS 297 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVI 350 G F Q A + + S + G Y P A D+ + K G + + +GY I Sbjct: 298 GMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKPVKTQYGYHI 357 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V + SF+ K + ++ TKA+ + L E + S++ +++ K Sbjct: 358 IEVQ-VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDSLEVVAQEVKA 416 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ A + + + LF K+ + + L +G +W+++++ Sbjct: 417 ARVE---SAKAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQLANGDSIWIKVRD 473 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L EV T+VK K + +K ++ ++ + + + Sbjct: 474 YHSAGIKPLSEVTTEVKAKVVEQKAYKAAQAKMASILADFKTQ--PAAQVVAKSQVNFEN 531 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV------EMVKCFPIENGLSYVVFKVTNSKVG-- 582 R + FS P + N L V +S V Sbjct: 532 AGTFAR----SHGLKRAIERAAFSIPAPSKEGMWSATTAKLPNELVIVAVSNVDSSVASS 587 Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P +E + Q + +L+ AYLKSQ + Sbjct: 588 LPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADIK 623 >gi|291287880|ref|YP_003504696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] gi|290885040|gb|ADD68740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] Length = 633 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 111/648 (17%), Positives = 244/648 (37%), Gaps = 50/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP---FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +R + ++ V+ F +WG+ D + S V + F Sbjct: 1 MISSLRNKKKLITFSLWFVIAAFVGTIFFVWGVGDKVQS---QLYAAKVDGVTITDQEFR 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + Q G ++ E + L+K +++ L++ L + + A V Sbjct: 58 DKVENTRNQFRQLFGNNID-EILKGDTLEKTVMETLITETLLRNEANRLNIPASDAEVAA 116 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F D +F ++V L+R + + + + ++ + + + S+ Sbjct: 117 NIQSVQAFQ-TDGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQ 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++Q + ++ Y+ L + + ++ LT +F+++K+ YR PE Y+ F Sbjct: 176 EVEQEFIYQNTVATIRYLELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTF 235 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKK 292 D + + S+ E++ + +NK + PE ++F ++K A E +Q KK Sbjct: 236 DPETYKGEFITSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIYQKAKK 295 Query: 293 -------GKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 G F ++AE+ + + LG F++ + ++ F+ G+ + V+ Sbjct: 296 VRKEIVDGADFAKMAEKYSEDSTAQNGGELGFFTRGQMV-PEFENAAFT-TNPGEVSDVV 353 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV----KEDYKRLEEFLALG 398 FG+ I +V PS + EVK +IA ++ K++ + YK + + Sbjct: 354 KTQFGFHIINVEEYIPSTDPTLDEVKDEIAALIKDQKSASSFRTHVYDTYKAILDK---- 409 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S + + + + + + +P + L + + + + Sbjct: 410 -SNITAYNEQAETPLPVREIKGLTAAGNVEPLNGMPAVAKRLLALTKSE----ISQVLEV 464 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + M ++ E + +LE++ V D+ VK+ E +KA + + E Sbjct: 465 GEPK-MIFEMTEKYDSYIPELEDIKEQVTADFVKVKSLELAKAKAVE-----ASELDTMD 518 Query: 519 DIGKNLGASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 D L S TT + R D N + +F G + + +V Sbjct: 519 DAANTLKESYTTTPKFKRTDPINGLGMNARLMGDIFKAEPGDFIKDVYTVGSNVYIVQVK 578 Query: 578 NSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + + Q K++ S L + + + S + LK+ + ++ Sbjct: 579 DIIKPDIATMDDQTKEQIKSSLFGVKSNQAVQSYVENLKANAKIEINP 626 >gi|165976428|ref|YP_001652021.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876529|gb|ABY69577.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 625 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 108/644 (16%), Positives = 241/644 (37%), Gaps = 42/644 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+E + + ++ V KI ++ + F+I V G + V V ++ +F + Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVI--TGIGTGLVGGGTAAVKVNGTEITQQAFNAAK 58 Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++ Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI SP+F +D KFS+D++ L G++ Y + + + + +G Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R V + S L ++++ +K PE + Y+ Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +++++++++ YEKNK Y + + N+ +A + +K G Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295 Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ + LG P + + SL + G + V++ Y I Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPK-AFEAAAASL-QDGQVSAVVNVDGAYHII 353 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKI 410 V K + ++VK I +R + + + + S++ +++ + Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-----YMW 465 + V A E++L +F + S ++ A+ G M+ Sbjct: 414 KVQKSAQFTQ-------QNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMF 466 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ + R + LEE +V + K K + + +KA + V ++ GK+ Sbjct: 467 VRVSDYQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNE--------GKDEK 518 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG 582 S + E++ VFS P V ++ + G Sbjct: 519 VSFGNAQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDG 576 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 ++E Q L + ++ L+++ S+ V+ + + + Sbjct: 577 SLEEFKPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620 >gi|297569902|ref|YP_003691246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio alkaliphilus AHT2] gi|296925817|gb|ADH86627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio alkaliphilus AHT2] Length = 630 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 107/644 (16%), Positives = 253/644 (39%), Gaps = 36/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++R+ +R+ + + +V++ + F++W + TV +V Q + F + Sbjct: 1 MLSLLRRKARSPLIQAAVVIIILVFILWVPQ--MGGNGDPGTVATVNDQPISTREFQRRY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 LG + + SE ++GL +++L +V L Q GL + + Sbjct: 59 NDLLGQYRDQFEGAIPSELIEALGLREQVLSQMVQETLLLQSARKTGLPVSSEELQQAVQ 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F ++ +FS ++ LA ++ E+ L R ++ +G + S+ + Sbjct: 119 SMGEF-TENGQFSLQLYRQILAASRLSVHEFEAGLRTDLLRRKILEHLMGFAQVSDQEVR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + Y+ L A DP++ + +F + YR P RI Y+LF Sbjct: 178 ERFHRDHDQVRLSYLYLRADDFRAAQDPTSEEIEAYFAEKDHRYRTPPQVRIDYLLFPAD 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288 + ++ I ++L A YE+N++++ +PE R ++ ++ +A E + Sbjct: 238 D--TEMTIEEEDLVAYYEQNRDRFDTPEQRRARHILIRSRSDAPEETRARQRQQAETVQE 295 Query: 289 SLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 ++G+ F QLA E + LG F + + + L +++F++ + G+ + ++ S Sbjct: 296 LAREGQDFRQLALLYSEDRSAEDGGDLGFFRRGEMLEP-LEEAVFAM-EPGEISDIVETS 353 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G+ + + I+ T++ E + +I ++ ++ + + E + S+ + Sbjct: 354 LGFHVIKLEEIQEPQTITLAEAEAEIRREILRSRGRQMAFNRANEVYESILTTGSLARGA 413 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + + G + AA+ + + F + ++ DG Y Sbjct: 414 EEGGVS------LQSTGLFTPEQPPAALRRHPEAVSSAFELNRG-ELSSIISTQDG-YAI 465 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + ++E + L EVL V+ D + A A +L+ +EG++ + + G Sbjct: 466 IYVQEREEPQVPPLAEVLDRVRADLIEEQAAMAARRAAEELLAAL-QEGQDLQHLAAAEG 524 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 + + ++ + V + V K+ + Sbjct: 525 YRVRESAWFSQATAAATDLPARVARTGLTLTKENPVPGTVQSANDRFYVIKLQQRRTADE 584 Query: 585 QEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + ++ + + ++D+ I +L + +TV + ++ Sbjct: 585 ELFQRWAEPIENDLLMAKQEAMIDTWIQHLLQEAKITVSEGTLR 628 >gi|110834075|ref|YP_692934.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2] gi|110647186|emb|CAL16662.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2] Length = 643 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 118/650 (18%), Positives = 249/650 (38%), Gaps = 41/650 (6%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ R+ R V K+ L + +PF+I G S V V K+ + Sbjct: 1 MQEFRRFVRGPVGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRGVVNQRVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + M+ ++ + N S + +LD +V+ + E + +V +I + Sbjct: 61 RVRNMLREQSPNM-NPALLDSFVRPEMVLDGIVNEQLILSAAEQSNMVFSEKQVAADIYK 119 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 PLF D KFS F L G+N + Y+ + + + F+ L L++ Sbjct: 120 VPLFQ-VDGKFSEQRFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSLPLELNE 178 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 +R ++R + Y+ L+ + S+ + +++ + + PE ++SY+ + Sbjct: 179 QRRLGEQSRDIRYVQLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYVELSADK 238 Query: 242 KEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEAD---------EAFQ 288 ++ ++++E++AEY+ K R V ++ + D EA + Sbjct: 239 YTDQVSVTDEEVEAEYDVRKSIMEEAGAGDARRHVSHILIELNDDRDLDQAKARAREAAK 298 Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 ++ G F +A + L S LG SK +P+ + +I L+ G + + Sbjct: 299 AIADGASFADVAAQYSDDLGSAQSGGELGVVSKGALPE-EMETAIAELS-PGTVSAPVVT 356 Query: 345 SFGYVIAHVS-NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 G + V+ + S ++ I + +A + ED +LEE L + Sbjct: 357 DAGVHLIFVTQEDTATALPSLADLSDQIRADLTKARAESLLNEDVSKLEELLYEHPDLQS 416 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + + + +D A + ++P +Q L + + D + + Y Sbjct: 417 PAEQVGVSVVTTDWIDLAAANAP----LSLPQVQQALNSEQVRQQGHNSD-LIEVDSTHY 471 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + V+I E PA L+EV +++ K ++V A ++ + +EG N + Sbjct: 472 IAVRIAEDKPAEPMPLDEVSFAIRERLKGELAMDKVQQLA-KMAEKTIEEGGNLESVATL 530 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM------VKCFPIENG--LSYVVFK 575 + + R E + ++ FS P V + NG ++Y V Sbjct: 531 FDVEIAEQEGLQRGGAEPAM---EVVNGAFSAPRAAEGDASPVSITRLGNGSVVAYQVTS 587 Query: 576 VTNSKVGPVQEKDKFIS--YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 V + P+ + + L + + V+A L+ + V ++ + + Sbjct: 588 VADGNAEPLSAAQQQAALIELGNVEGQRNFRQVVALLRDEGDVELYPSRL 637 >gi|120554754|ref|YP_959105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] gi|120324603|gb|ABM18918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] Length = 617 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 119/638 (18%), Positives = 250/638 (39%), Gaps = 40/638 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR +++ +AK+ + +L + IWG+ + +G V +V Q + F+ + Sbjct: 1 MLQDIRDNAQSTIAKVIVGLLIISLSIWGMDAIIGGFTGEPEVATVNGQDITEREFLRTV 60 Query: 61 KQE-LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + E + Q + + + +LD L+ A L Q + GLE + I Sbjct: 61 QMESQQRLMQMENR--DQSLLDEDQIRRDVLDALIREAVLTQDAQSQGLELTDADIDSLI 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + P F D +F+ D FV+ + G+ E+ + K + + Sbjct: 119 TQMPQFQ-VDGQFNRDRFVATVRNVGMGVAEFRESIRKNYVVNQIRAAIAQTGVVAPENA 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R + L+ V D + A + ++++ + +R PE +YI Sbjct: 178 AHLLAIQNQTRDFRVLTLDGSSVQDQVDVTEADVQAYYDENLNQFRQPEQVDAAYITLSQ 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----AFQSLKKGKK 295 + IE++ DEL+ + + + ++ E R ++ E Q L+KG+ Sbjct: 238 GALAESIEVAEDELRTY-YEERAEEYAREERRAAHILVEAGDEGQATLATIQQRLEKGES 296 Query: 296 FIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LAEE + LG + + D + D++F L ++G+ + + SFG + Sbjct: 297 FAVLAEEYSVDTVSAQEGGDLGFAGRG-VYDEAFEDALFGL-EEGEVSGPVETSFGLHLI 354 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + ++ S +F E+++D+ ++ TKASE+ E +L + + + + Sbjct: 355 KLEEVRRSDVPAFDELREDLRLELARTKASERFAEVRSQLADAAYAADDLAGPAEELGLE 414 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQI 468 + V G A P+ L R +D L + L D + ++ Sbjct: 415 IRVVEGVSRDG--------GAAPFDHAGLVRQLFSEDVLEGGYNTELIDVGDNVSVVARV 466 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 +E R L +V ++++ + +T + ++++ ++LV + + G + ++G + Sbjct: 467 REYHEPRQLALADVEPEIRRILERTETRDALAARVDELVAQL-ESGTSADELG------V 519 Query: 529 LTTNQINRMDNENKFFGYDGISQVFS-----GPVEMVKCFPIENGLSYVVFK-VTNSKVG 582 Q + +VFS G V + + +V V +V Sbjct: 520 GEWQQFEDQGRSVSGLSPRVVQEVFSMARPDGDSPTVGRAVTADQAAVIVLTGVNEGEVD 579 Query: 583 PV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 E + + +L Q+ + + YL++ V + Sbjct: 580 QEGAEYQQLMRFLAQLEGQREYTAYQQYLRNTAEVERN 617 >gi|73666959|ref|YP_302975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str. Jake] gi|72394100|gb|AAZ68377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str. Jake] Length = 630 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 128/642 (19%), Positives = 271/642 (42%), Gaps = 37/642 (5%) Query: 8 ASRTWVAKIFLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 S+ K L++L F+ +G S + + V +G +K+ + N++ EL Sbjct: 2 KSKGLFVKPLLIILVCSLVFIAFGTSFFPGNFNNDKYVAKIGHEKLSLQDYTNAYHDELR 61 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 I Q + + E+ + +L+ L+ L +F + + L+ + I F Sbjct: 62 YIQQILNRPLTEEQIAQFNIKLSVLNKLIENKVLTKFTDSLNLKVGEKSILSHIKSIKFF 121 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NLLLD 180 ++ F F L+ G+ E+ YI+ K ++ G + + L+ Sbjct: 122 QDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPVAMLMSCLFSGTQNTYVKYHPELIK 181 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYILFD 238 Q + + R++D I ++ I+ PS L + +E+ + N PE + I Y+ + Sbjct: 182 QILQNLHQARTIDLIEISPST-NDISVPSLDELKKLYEEKRKSGNLTFPENRVIEYLTIN 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +I ++ +++ + + E R + LVF + EA+ A ++L +G F Sbjct: 241 YKNFINQINVTQEDI----DNEIKTEELDEQRDILNLVFSTKNEAEAALKALNEGTDFND 296 Query: 299 LAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +D I+L + K +P+ + +FSL K+GD +P++H FG+ I + +I Sbjct: 297 VVTNIAHTTTDNITLNNIVKNTLPN-DIRGKVFSL-KEGDISPILHSMFGWHIIKIKSIH 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 T QE+ + IA ++ KA + + + + + + G S++EI++ + SI Sbjct: 355 KISTEDLQELSEKIAQNIKKKKAISLLTTEIESINDKINNGASINEIAKLYNL-SIKTIN 413 Query: 418 VDFAGKDVKGKEVAAIPYK-EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 D +GKD+ G ++ + ++ F L+K D + V + + P+R+ Sbjct: 414 TDISGKDLSGNKIKMSESNADAIILAAFSA--QLNKPSNFTDNDDYFFSVNVTKVEPSRE 471 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + +E + +W+ ++++S ++V++ K+ DI G L + + R Sbjct: 472 KTFDESKEQLVYEWQNDLKSQKLSKLTQEVVVKL----KSGIDIHNIDGVLLNSNQMVYR 527 Query: 537 M-----DNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPV 584 DN + + D + ++F+ + E + + K + N+ Sbjct: 528 NSVAAVDNPGQNYPTDLVDEIFNLKKGEISKSYQSSTNSSEQKMLIAILKDIKNADQVSN 587 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + + L + +I YL +YSV ++ NLI Sbjct: 588 VDFKNIQEKIANDNLESLKNQLITYLTKKYSVKINQNLIDNV 629 >gi|212703745|ref|ZP_03311873.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098] gi|212672827|gb|EEB33310.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098] Length = 650 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 106/658 (16%), Positives = 230/658 (34%), Gaps = 42/658 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++++ K+ ++ + F+ WG+ L S+ V V + + F ++ Sbjct: 1 MLDYIRSNAQSFGVKVAFAIIILVFMFWGVGS-LTDGGSSNVVAKVNGEAITAQQFEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + E L +++L+ L+S + Q +G+ + ++ Sbjct: 60 QRAAEYAMRNDPS-LTREALVQQKLGRQVLNELISAQLIRQEAARVGMTVSPEEMHYVVS 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F KF + + + + ++ EY + R V+ G + Sbjct: 119 KLPAFQDAQGKFDPEAYKRAIEAQRMSVAEYEQGLADSILRDKVMRTVAGSAWAAGGEAR 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + F + R+V+Y+ L A P+ L W+E +K + + Y+ Sbjct: 179 KYYDFLTQQRAVEYLYLPAADFAASVKPTEEELGAWYEAHKAELASQPRVEVEYVAVAPE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGK---- 294 + +S + YE NK+++ PE V ++ P + A EA Q+++K Sbjct: 239 SLVRPESVSAEAALKWYEANKQRFRQPEQVKVAHILVPLAENAPEAAVKQAMEKAARIRS 298 Query: 295 -----KFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F +A+ + LG + D+ ++L + G + + F Sbjct: 299 EAEKGDFAAVADANNGPNAAGPGGELGWIQRGQTVKP-FEDAAWAL-QPGQISEPVRSQF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G I + + K + F EV+ ++ + + EKV + L + E + Sbjct: 357 GLHIIKMEDRKDASVQPFAEVEAEVRATLAKQEGVEKVNDVLDSLIGDNINNRPLQESAA 416 Query: 407 REK----IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 R D PL+ + G+ P + AL G Sbjct: 417 RAGSYKDADGKDQPLLKAERTGLVGQAELQKALGISDEMAASLMKAPANSPVDTALEAGD 476 Query: 463 -YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 Y+ V++ S P+ L++ V K K + KA L + D Sbjct: 477 RYLVVRVLTSEPSTTPSLDQARDRVMKALVAEKALQAAMGKATALRKAMTDGQLPAEDAA 536 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEM-------VKCFPIENGLSYVV 573 + + + + R F ++Q +F + V + ++ Sbjct: 537 R------VQSADLTRDGALAGFVPNPVMNQVIFRAAPQTWIDQAFSVYEQEDSSKCGALL 590 Query: 574 FKVTNSKVGPVQ---EKDKFISYLTQMMNKD-LLDSVIAYLKSQYSVTV-HDNLIQRY 626 +VT + + ++ L Q + + + + L+ + + V + +++ Sbjct: 591 CRVTAVEQPKADGWAGMENLLTELVQRKRVEGMYQTFMRMLEQKAKIEVYNSRVLESA 648 >gi|332524209|ref|ZP_08400435.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Rubrivivax benzoatilyticus JA2] gi|332107544|gb|EGJ08768.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein [Rubrivivax benzoatilyticus JA2] Length = 635 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 111/653 (16%), Positives = 236/653 (36%), Gaps = 51/653 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVGRQKVPFSSFINS 59 M + +R SR + + +++F F+ +G+ F+ G+ TV VG Q + + + + Sbjct: 1 MFDFVRNHSRLVLGILV-LLIFPSFIFFGVQGYSRFTEGGAVTVAEVGGQAISRAEWDAA 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + + ++ ++ + + L ++ LD LV L L D R+ Sbjct: 60 HQNNIERLRRQRPE-LDPKLLETPELKRETLDGLVRDRVLMATARQYHLVPDDARLQRLF 118 Query: 120 ARSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P F D + + LA +G++ + + + V+G Sbjct: 119 VTDPQFAGLRNPDGSVNRE----ILAAQGMSVEAFEQQLRQEFGMQQVLGAVAQSSFTPP 174 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + R V + A A P +A L ++E + +RAPE +I Y++ Sbjct: 175 AVAATSLDALLQRREVQIQRFDAAAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVV 234 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--- 293 D+ K + + ++L+ YE+N +Y E R ++ A + K Sbjct: 235 LDLAALAKDVAVPEEDLRRYYEENASRYTQAEERRASHILIRVDPSAPADEKKAAKARAE 294 Query: 294 ----------KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP 340 F ++A + + S G F + D+++++ K G+ + Sbjct: 295 QLLAEVRRSPNSFAEVARKNSQDPGSASRGGDLDFFGRGMMAKPFEDAVYAM-KTGEISN 353 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 VI FGY + ++ ++ +F V+ +I ++R + A ++ E + + Sbjct: 354 VIETDFGYHVITLTGLRGGQKKAFDTVRAEIEQEVRRSLAQKRYAEAAETFTNTVYEQSD 413 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457 S+ + + K+ ++ G +A +LL VF D +K +T V Sbjct: 414 SLQPVIDKLKLQKQTATVLRQPAPGASGALASA-----KLLDAVFSDDVVRNKRNTDAVE 468 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + + +I PAR L EV V++ K+A ++ K Sbjct: 469 IGQNQLVSARIVTHSPARTLPLAEVRDQVREAVVAQKSAALAKAEGA----------KRL 518 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575 + K+ +L + ++R + + I V + + + Y V + Sbjct: 519 EALKKSPNEALPISLTLSR--AQPQGAPRAVIDAVLRADTKQLPAIVGVDLGSQGYAVVR 576 Query: 576 VTNS--KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 V+ + L Q + + LK + + + +Q Sbjct: 577 VSKVLQREADPATDAMLQQQLAQTWATAEALAYLDALKRRTKAEIKEAAVQAA 629 >gi|326795821|ref|YP_004313641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas mediterranea MMB-1] gi|326546585|gb|ADZ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas mediterranea MMB-1] Length = 613 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 91/622 (14%), Positives = 219/622 (35%), Gaps = 45/622 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S++ + KI + + V F ++G+ + S + S TV V +++ + + + Sbjct: 1 MLQDIRDRSQSLIVKIIIGFIVVTFALFGVDALVTSFNSSETVAEVDGKEITRTQVLQTA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G ++ L ++ LD+L+ A L + + L ++ + Sbjct: 61 DTQRRQLISMMGNNIDPSLLDENLLQRRALDSLIELAVLKNQADGLELGVSDAQIDSLLV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + + D F + +++ + G Y + + + + ++ Sbjct: 121 SAEQYQ-TDGVFDQNKYLNAIRSLGFTPLAYKERIKESYVLSQLRSAVTESEFALPSQVN 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R+ +Y+ + D ++ L +++ ++ ++ +PE +ISY++ Sbjct: 180 AISELQNQKRTYEYVQFSLADQTEQTDVTDGELQAYYDDHQQDFVSPEQVKISYVVVTTD 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----QKEAD----EAFQSLKK 292 +++++ ELQ Y+ + E R ++ + EA E L Sbjct: 240 ALATNVKVTDQELQNAYQTEIAGLDT-EERDASHILIDTSIRSEDEAKSIIAEIQSKLAS 298 Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSF 346 G F LA+E LG +K + + S D++F++ GD + Sbjct: 299 GDSFASLAKEYSDDPGSKDVGGELGFVAKGALGESFESFEDALFAM-NVGDIQE-AETQY 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G + ++ I + + +E++ + + KA + + + + + + + ++ Sbjct: 357 GLHLIKLNAIDKADAPTLEELRDQLTADITARKAKDALLDAQENIADLAYASDELAPLAD 416 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 +D+ D+ G+ + + P F K D + D + L D + + Sbjct: 417 EY---GLDVETSDYFGQSGGNDVITSEPTVISAAFSDSVKQDGQNSD-PIELGDDKIVVI 472 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 + + E+ T++ K +S KA +L + + + Sbjct: 473 HVDDHKAESPLSFEDAKTEIASTLIKEKAESIISEKAAELFAD------------ASQDS 520 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVG 582 R +E VFS P + V K+ + G Sbjct: 521 GWEKVELAPRGQDEVTSL-------VFSMPHPVEGTVQTAVKSLVNGDVVALKLLDVVAG 573 Query: 583 PVQEKDKFISYLTQMMNKDLLD 604 T+ + ++ Sbjct: 574 ESDSDSTRTDAYTRFVTQNQAQ 595 >gi|126731274|ref|ZP_01747081.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37] gi|126708185|gb|EBA07244.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37] Length = 615 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 113/598 (18%), Positives = 250/598 (41%), Gaps = 26/598 (4%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 S++ VG ++P S + + +QE+ + + G ++ ++AR++G+ +L +V+ Sbjct: 33 GGSVSSIGKVGEAEIPASDYFRAMQQEIRAVQTQTGQALSMQQARAMGIPDMVLSRVVTT 92 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 A L+ +G+ R+ ++ P F G D F + + L G +E+E+ + Sbjct: 93 AALENEAAQLGISVGDERLAQDLREIPAFQGIDGSFDRESYRLALQGAGFSEREFEEQLR 152 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215 + T + G+ + + E R+ + L + + + P++ L Sbjct: 153 AESASTLLQNAIQAGVALPPVYAQTLVSYTGERRAFTWAELGSEQLSTGLPIPTDEELQT 212 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ D Y P ++I+Y +E+ D L+A Y++ ++ PE R VE+L Sbjct: 213 FYDENIDRYTRPTTRKITYAWLTPAMIVDTVEVPEDMLRATYDERSSEFNLPERRLVERL 272 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 V+ +++ A +A + G F L E+G ++D +G ++ + + +++F+ A+ Sbjct: 273 VYSSEEAAQDAAARVANGDVPFETLVRERGLDIADTDMGDVTEASLG--AAGETVFA-AE 329 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GD G + V+ + + SF+E + + + + +A ++ +L++ Sbjct: 330 VGDVVQ-APSDLGPALYRVNAVLAAQDTSFEEAIPQMRDTLALAQARRVIEGLANQLDDE 388 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G ++++++ ++L +D+ G +A D P Sbjct: 389 LAAGATLEDLA---GDTEMELGQIDWTSASSDG--IAGYEAFNTAAAEAETGDYP----A 439 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 L DG +++ E A +V V++DW+ A ++ +A L + S + Sbjct: 440 IAELGDGGLFALRLDEIQEAAPYPFADVRARVEQDWEADARATALADQAEALANQLSGD- 498 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 F D+ S + R N++ ++QVF+ G +YVV Sbjct: 499 TGFDDLNLR---SRTVAEGLTRNANDDNV-PPAVLAQVFTMSEGDAAAVKGA-GTAYVVR 553 Query: 575 KVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 +V P E + F Q +++DL ++ ++++ V + + L Sbjct: 554 LDDIIEVDPEDETVRQFRQLFAQQADQDVSQDLFRALAQDIQARAGVEIDQAAVNAVL 611 >gi|58584787|ref|YP_198360.1| parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419103|gb|AAW71118.1| Parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 602 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 127/624 (20%), Positives = 267/624 (42%), Gaps = 32/624 (5%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + K+ V+L + G+ + L + V VG++ + + ++ I Sbjct: 2 NVKNFFTKVTAVILTCLLIFTGVGNFLSDENKKEEVARVGKEVITLGEYKLLYQSYGKQI 61 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S G ++ E+ + + D +L+ L+ L I D+GL + I + F Sbjct: 62 S---GSDISEEQVKRLKYD--LLNALIEQKLLFNLISDLGLVVGEESIKDHIRNTKYFQN 116 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184 KF + F L + E EY+ K+L + P + +Q + Sbjct: 117 DKGKFDKEKFHEALNSLHMTEGEYVAKLEKILPAIMFITSLFHDNYPVTFGEKIDEQIYK 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + R V+ + + V + +P + VL +EK K ++ PEY+ YI Sbjct: 177 NRHQTRVVNIVKITQNAVTNVTEPDDRVLLDLYEKNKSHFYYPEYRTAQYISLGQKYFAN 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +I+IS+ E+ ++ + K + R + L+F ++EA+ A + ++ K F Q+ E+ Sbjct: 237 QIQISDREVDDIIKQQELK----DQRDIFNLIFYTKEEAETARKEFEEDKVSFEQIVEKF 292 Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 GK+ L + + + +K+ +P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 293 GKTKLEETRINNITKDSLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVDSAHQISNE 350 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 + ++KK+I + K+ EKV + ++ + G +++ IS + + +D +G Sbjct: 351 NLVDLKKNIKLVLTNQKSFEKVNDFINQVNYKIYNGATIEGISSEYNLPMQTIGPIDASG 410 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 KD G V + L+ +F ++ K + + D + + V+I +P + + EE Sbjct: 411 KDQSGNSVES---SSDLVSFIFSREKD-QKGYFKGVGD-AVVSVKIVNIVPPKLQSFEEG 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 W+ E++ ++ ++ D+ K G L+ QI+R + + Sbjct: 466 KALAIDLWRNGFIKEKMFKIGQEVAARLKEK----ADLKKTQGIELIKDQQIHRNEVGQQ 521 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYV--VFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + + I ++F+ P+++ + V K S G + D + Sbjct: 522 SYPFSFIEEIFNMKTIGSVTDPVQHNNEVIVGVLKEMYSSSGKLNTFDTGKRVMI----- 576 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624 L + +I+YL+S+Y V V+ ++ Sbjct: 577 SLKEQLISYLESKYKVKVNHAILD 600 >gi|92114164|ref|YP_574092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter salexigens DSM 3043] gi|91797254|gb|ABE59393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter salexigens DSM 3043] Length = 602 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 112/633 (17%), Positives = 242/633 (38%), Gaps = 49/633 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR+ S+ WVAK+ + + V F ++G + SGS + +V + + + Sbjct: 1 MLQRIREGSQGWVAKMIVGAIIVTFALFGAESLVGVFTSGSDDIATVNGEPIKRQAVELQ 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ + V E+ R L +++D +++ LDQ+ E+ G+ ++ I Sbjct: 61 VQRGIRS------GQVPPEQERE--LRAQVIDQMITTELLDQYAEEGGMHLSDAQIDQLI 112 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F + FS ++F +RLA G + + + R + Sbjct: 113 VSRPEFQDSEGNFSQELFSNRLASAGYTPLSFRRELRRDMKRQQLQQGVALSTFVLPGEA 172 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ + + R Y L + A + + + + ++E ++D Y+ PE +++Y++ + Sbjct: 173 ERLQALQNQTRDFRYASLTADDLEAPVEVTESDMQAYYEAHQDQYQRPEQVKVAYVVLNQ 232 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290 + + +++ +L+ Y +E R V ++ +EA L Sbjct: 233 QDVAQDVDVDEQQLRDAYAAERE----DAPREVAHVMVDYGDERSRDEAMARIEEAQGQL 288 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +G F +A E +LG ++ + D + D+ FSL + G + V+ Sbjct: 289 AEGADFADVAAEYSDDATTANKGGNLGVINRGFFGD-AFDDAAFSLDE-GQVSSVVDSGD 346 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G + V++I SF E + ++A Q+R+ + + E ++LE+ + ++ Sbjct: 347 GLHLIKVTDI---DMPSFDEQRDELAEQVRLDNSRDAFNERAQQLEDRSYAADDLQSVAD 403 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 +D+ D+ D + V A P F ++ + D + L D + Sbjct: 404 EL---GLDVQTSDWVSAD-SAEGVLAEPGMMDAAFSEDVLENGYNSD-VIELDDQRRAVL 458 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 ++ + A L+EV V++ + VKT E + ++A +LV A Sbjct: 459 RVVDHREATTLSLDEVSERVREATREVKTREALEARAERLVASLRNG-----------DA 507 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPV 584 L Q++ + Q F P + ++T + G Sbjct: 508 VSLDWQQVDDATRRGDAAPEPVLRQAFRLPHPNDGQTYGHAMTDAGVAIIELTQVRDGDA 567 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +E ++ + + + L+ + Sbjct: 568 EEAGNSARMAERLRAQAAIQGLTESLREDAEIE 600 >gi|118602656|ref|YP_903871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567595|gb|ABL02400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 615 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 112/627 (17%), Positives = 251/627 (40%), Gaps = 26/627 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IR ++ WVA + + ++ +PF+++G+S+ VS + SV + + F+ + Sbjct: 1 MLGSIRNKTKGWVAYLIVGLITIPFVLFGISEYFTGVSN-IVIASVDGVDISKAEFLAKF 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q++ ++E L + IL+ ++ L+Q ++ E + I Sbjct: 60 NPQKRRLQQELDKKYDTEF--DAMLKQSILNQMIDKYLLEQLSNELSYETTANELNTIIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + LF K +FS + + L G +Y + L+ T + + L Sbjct: 118 ANNLFKKK-GRFSLEKYKQLLRLNGYTTIKYEAIKLQELTETQIKYNLLDSAFVIPTELA 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + ++ + R YI ++ + ++ K + APE +I ++ ++ Sbjct: 177 KLQKLNDQQRQFSYIAIHADDYVKEVKVDVQSVKNFYNNKKALFFAPEQVKIEFVELSLN 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K I++S+DEL Y+ +E++ E R + ++ ++ A + L G KF +LA Sbjct: 237 KISKNIKVSDDELFNFYKDEQERFTREEERQAQHILLEDKSTAQKVIALLNNGGKFAKLA 296 Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 E+ + + LG F++ + +F++ K + + ++ FGY I ++NI Sbjct: 297 EQYSQDTASKANAGDLGFFTRGVML-PEFEKKVFAM-KLNEVSDLVKSEFGYHIIKLNNI 354 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K F VK ++ + T+A + ++L LA +++EI + + Sbjct: 355 KVKTLKPFDAVKSELLDLYTQTQAQKVFYSLTEQLTH-LAYEVNLEEIVDQMNLKLQVSD 413 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 D + +++ + + +L + + L M ++++E + R Sbjct: 414 FFDRKNTQLN-QKIVVTAFSDTVLNK-------GENSEILELSKNKLMVIRVREKLAQRQ 465 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + EV ++ T+ V + A +V K+ N + L N ++ Sbjct: 466 KSFIEVKDEINAHLMTLLAKIFVDNLAKNVVDLLVHNDKDTLKKLMNK--NKLKWNHVDW 523 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSK-VGPVQEKDKFI 591 + ++ I++VF+ F + + V+ K+ K Sbjct: 524 VKRDSSKVKMAIINKVFALAKSTNGNFSYSAQDLDESNVVIIKLLGVKTTDTKTVNTTLE 583 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618 L + ++ +++ LKSQ + + Sbjct: 584 RSLLIFESNEIFANILETLKSQAKIKI 610 >gi|254468807|ref|ZP_05082213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium KB13] gi|207087617|gb|EDZ64900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium KB13] Length = 627 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 108/646 (16%), Positives = 250/646 (38%), Gaps = 44/646 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR AK+ L ++ VPF ++G+ L S+ + TV SV ++ F S Sbjct: 1 MLETIRNGLEKKWAKVVLAIIVVPFALFGIDSYLNSMGSNVTVASVNNFEITAQDFQRSM 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +S K ++D+LV + ++ ++ I Sbjct: 61 MVLQERLDA---EGQDRSILQSPEFRKSVIDSLVDSQLIKSAVDKYNFRISDDQLSTYIV 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ KFS D + + G+ K+ ++ + G ++ Sbjct: 118 GMPDFQ-ENGKFSQDRYDQIVQYNGLTPKKLEQQIRGDMATQQIQGTLANLTYFPKKNIE 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + ++ R V + ++ + +++E D++ P+ +I ++++ V Sbjct: 177 EIAKIAYQKRHVKLYDMLLLDYEDKIKVTDDEIKEFYEANTDSFIRPDQVKIEFVVYSVA 236 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 + ++++E++ YE NK+ Y E R+ ++F +++A + Sbjct: 237 NIVPNVSVTDEEVKEFYEFNKQNYEGDEERSASHILFMADASQSDEEVEKVRQKASNVLK 296 Query: 289 SLKK-GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +KK KF + A++ + + SLG F + + +S F+L KG+ + ++ Sbjct: 297 DIKKDPNKFEEYAKDLSQDPESAKNGGSLGFFKRGVMVK-EFEESAFTL-NKGEISDLVR 354 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMD 402 FG+ I + ++K SF++VK + ++ KA E + + + S+D Sbjct: 355 TDFGFHIIRLDDVKGDQV-SFKDVKAQVKGELLYGKALEIYNTNAEDFSNIVYEQKESLD 413 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + ++ + D+ + K + P + +F D + P+ Sbjct: 414 PVVKKYNL---DVQQSPWMSK-ADAENFFNNPVFSEAVFDQTIIDSKFNTPAIEVSPNN- 468 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + ++ + + + L++V +VK K + E + + N+LV + +D G Sbjct: 469 LVSARVVDFRKSEAQALDDVKDEVKSFLKKRNSQENLINDGNKLV-------EGLQD-GS 520 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSK 580 + I+R D + ++F + + + ++V K+ Sbjct: 521 AKEPKWIDELTIDRSDKQG--LSDVIAEEIFKMNSSTLPIYSGIYDPKGEFMVIKLDKVD 578 Query: 581 VGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 ++ + F + K++ S + L++ V ++ +Q Sbjct: 579 SESILEEDVEFFNEEFMAAIEKEIEKSYVEDLRADSKVKINSKFLQ 624 >gi|149184601|ref|ZP_01862919.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21] gi|148831921|gb|EDL50354.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21] Length = 645 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 133/641 (20%), Positives = 250/641 (39%), Gaps = 26/641 (4%) Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFS 54 ML R +T + A FL ++ F +S A V+G +V VG K+ + Sbjct: 1 MLTFFRNFFKTKIGLAIALAFLGLIGFAFASMDVSNTGAFGGVAGGDSVAVVGGSKISTA 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + L ++ V +D+ +L+ L+ L + E+ G A Sbjct: 61 ELNEAMDNALRRAREENPDVTMQTLIAEGEMDR-VLEGLIDRYALMAWAEENGFRAGANL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V EI + P G F + + L I + + + V + G + Sbjct: 120 VNSEIRQIPAARGPSGNFETAAYEAFLRNNSITDSQLRQQLRTTVYFQQAVFPALYGTQL 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + R + E RS + DP++A L++++ + + + PE + + Y Sbjct: 180 PESIARTYARSFKERRSGGIATIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRY 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 FD I S++++ A Y+ N E+Y + E R + QL+ P ++ A+ ++ G+ Sbjct: 240 ATFDSSALGGSINPSDEDIAAYYQDNAEEYAARETRNLTQLIVPTREGAEALAARVRGGE 299 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F Q A G L L + I ++AD+ FS ++ G T S G+ IA Sbjct: 300 SFAQAASSSG--LRTTQLDGRERSDIRSAASQAVADAYFSASE-GAVTAPARSSLGWHIA 356 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V+++ P S EV+ I +R K + E +E+ LA G S+ ++ + Sbjct: 357 RVNSVDPQPARSLAEVRDSIVEVLREQKRQRGIAELAVGIEDRLADGASLSSVASELGVE 416 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKE 470 D P + +G + G +L F D+ + AL D +++ ++ + Sbjct: 417 LQDTPPLTDSGL-IYGTGERVPDMLAPVLEFAFQIDE--GEPEIGALADQQTFLIYEVAD 473 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P+ L E+ +V +W+ V+ E AN+ VL +EG + ++ Sbjct: 474 ITPSAAAPLAEIRNEVTAEWRRVRGNEGAEEAANR-VLRRVEEGATLAEAVAAEEKAIGA 532 Query: 531 TNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586 Q+ E G I+ +F K L + V + + + +++ Sbjct: 533 PQQVTYSREELARMGNTRVPAPIALLFGMAKGTAKKLEGSRDLGWYVVDLEDIVLEDLED 592 Query: 587 KDKFI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 D I S + Q + + +IA ++S+ V ++ I Sbjct: 593 NDPLIGQAKSQIAQAWGNEYGEQLIAAMRSKLGVERNEEAI 633 >gi|57239078|ref|YP_180214.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] gi|58579021|ref|YP_197233.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] gi|57161157|emb|CAH58070.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] gi|58417647|emb|CAI26851.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Welgevonden] Length = 630 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 129/638 (20%), Positives = 283/638 (44%), Gaps = 29/638 (4%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELG 65 S+ + AK+ L+VL + + LFS S V +G++K+ F ++ EL Sbjct: 2 KSKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELR 61 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 I Q + + E+ + +L+ L+ L +F + L+ V I F Sbjct: 62 YIQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYF 121 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLD 180 ++ F F + L+ G+ E+ YI + ++ GG + + L L Sbjct: 122 QDENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGGPQNNYLQYYPDLTK 181 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFD 238 + + ++R+VD I ++ + I+ P+ L +E+ K ++ PE + I Y+ + Sbjct: 182 KILQNLHQSRTVDIIEISPV-INDISIPNMEELKSLYEEKKKNNSLVFPESRDIEYVTIN 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 K +S +E+ +E + + + LVF + +A+ A L GK F Sbjct: 241 YENFITKATVSQEEIDSEIKAE----GLDDQIDILNLVFSAKSDAENALSELNNGKTFDS 296 Query: 299 LAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +L I+L + +K +PD + + +FSL K+G+ +P++H FG+ I V+++ Sbjct: 297 IVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKVTSVH 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 QE+ K I+ ++ KA++ + + + + + + GTS+ EI++ + I Sbjct: 355 KISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNLP-IKTIT 413 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 D +G ++ GK+V+ + + G L++ + + V++ + AR++ Sbjct: 414 TDISGYNLSGKKVSISEANPNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQAREK 472 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTTNQIN 535 +E ++ +W+ + ++S +++++ K G + ++I L ++ N + Sbjct: 473 TFDESKQELVDEWQNNFKSRKLSKLTQEILIKL-KSGIDIQNIDGVLLKPNQVVYRNSVA 531 Query: 536 RMDNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPVQEKD 588 +DN + + + ++++F+ + + P E + V K + N + + Sbjct: 532 SIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPEQVSTVDLK 591 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L+ + L + +I YL ++YSV ++ LI+ Sbjct: 592 ATQEKLSNNNTESLKNQLITYLTNKYSVKINRKLIENI 629 >gi|126735661|ref|ZP_01751406.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. CCS2] gi|126714848|gb|EBA11714.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp. CCS2] Length = 612 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 110/619 (17%), Positives = 249/619 (40%), Gaps = 32/619 (5%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A I + V+ + +G + +VG + V S+ + +++ +S + G Sbjct: 11 AWIIVGVILLGLAGFGTGGL---SGNIRNIGTVGDKDVTVVSYQRALNEQIRALSAQFGQ 67 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ ++A++ G+D+ L +V TLD ++G+ RV+ + P F G F+ Sbjct: 68 QISFQQAQAFGIDQVALSQVVLLRTLDNEASELGISVGDERVFDRLQTIPSFQGA-GGFN 126 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + L + G E+ + + +RT + G V G+ + D +F E RS+ Sbjct: 127 RETYRLSLQQSGQTAAEFENGIREETARTLLQGAVVSGVPAPDAYADALVQFISETRSIT 186 Query: 194 YIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + V++ + A + A ++++ + PE + I+Y+ + + +++ Sbjct: 187 WAVVDAGDLTAPVPGATEAAQQEYYDANPAEFTLPESRDITYVWLTPNMIIDDMVVADAA 246 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDIS 311 ++ Y + ++ PE R VE+LV+ +Q A +A + G+ F L E+G L+DI Sbjct: 247 VEQLYNQRIAEFVQPERRLVERLVYLSQDRAADAMARVNAGEATFEDLVAERGLRLTDID 306 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG S++ + S +++F+ A+ G + G + ++ + + + +E + Sbjct: 307 LGDVSQDDLG--SAGEAVFA-AETGTVVGPFNSPLGPALFRMNAVLAAQEIPLEEAAPRL 363 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 +++ A E + + + LA G +M +++ R + L +++ + G +A Sbjct: 364 RDELATDAAREFINSSADPIIDLLAGGATMADLAER---TDMRLGTINWTPDNTDG--IA 418 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 A + V P L DG + + +P + +E+V + W+ Sbjct: 419 AYDAFRREAAAVQDAQFP----EVFDLADGGIFALSLDGIVPPTLQPIEDVRDALAAAWQ 474 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + + +KA ++ + LG + + R Q Sbjct: 475 AQAQQDAIMAKAEEISADIL----PLTGF-DTLGLDPIVEENLTRRTFLEGT-PPSFNDQ 528 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMMNKDLLDS 605 VF V V+ EN ++ ++ + + ++D + +D+ D+ Sbjct: 529 VFEMAVGDVRVLDAENRA--LIVRLDDIAAPDLSDEAVIAQRDAVAENTRAGIAQDIFDA 586 Query: 606 VIAYLKSQYSVTVHDNLIQ 624 L+ + ++ I Sbjct: 587 YATELQQRTEQRLNQQTID 605 >gi|262372262|ref|ZP_06065541.1| ppic-type ppiase domain-containing protein [Acinetobacter junii SH205] gi|262312287|gb|EEY93372.1| ppic-type ppiase domain-containing protein [Acinetobacter junii SH205] Length = 623 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 104/637 (16%), Positives = 225/637 (35%), Gaps = 35/637 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ LV+ P + G+ + + SV Q + + K Sbjct: 1 MESFRTLIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELETATK 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + +K LD L++ + L Q E +G+ ++ +A+ Sbjct: 61 NYKDQYLSLVKG--DESLLNLSLIQEKALDALIARSLLQQQAEKLGISLSDTQLEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ +FS ++ + L G+ + I + + + + S L Q Sbjct: 119 QPSFQ-ENGQFSQKLYENYLRSVGMTNQGLIASLRQDHALKMISSTLMDYALVSKSDLQQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN + ++ K+K+ ++ + Y++ Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGITVSNQEIADYYNKHKNQFKQVANVDVDYVVLTPAL 237 Query: 242 KEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKK 292 + + S ELQ Y+ +K R V+ ++ QK A++ + ++ Sbjct: 238 LPQANVAPSEAELQQAYKAFVDKQQKDVKREVKHILITTDSRDAATAQKLANDVYAKIQS 297 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYV 349 G F A + + S + G + Y P V +++ SL K G + + +GY Sbjct: 298 GMSFADAAAQFSEDPSSKTQGGLVEAYAPGVFSTDFDNAVNSL-KNGQISKPVKTQYGYH 356 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I + S++ K + +++ TK + + L E + S+D +++ K Sbjct: 357 IIAANA-PAIDIPSYEAEKPRLIAEVQKTKQANLFSDTVNSLNEMVVGNDSLDAVAQEVK 415 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 V ++ + + LF K+ + ++ L +G +W++++ Sbjct: 416 GVRVE---SAKGVTLTTQNPYLSDLNVKAKLFNDDVKNGDRNASSSIQLANGDVIWIKVR 472 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + A + L + T+VK K + +K + E+ + + Sbjct: 473 DYRAAGVKTLAQATTEVKAKVIEEKAYKAAQAKIASTLAEFKTQ--PAAQVVAKSKIIFE 530 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPV------EMVKCFPIENGLSYVVFKVTNSKVGP 583 R ++ FS P V + N L V N+ Sbjct: 531 DAGTYAR----SQGLKRAIERAAFSIPAPTKEGMWSVTTTQLPNELVIVAVSTVNTNAAS 586 Query: 584 V---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ ++ Q + +L+ YLKSQ + Sbjct: 587 ALQPEQLNELTKLYQQFRGQQILEDYTEYLKSQAKIK 623 >gi|254284340|ref|ZP_04959308.1| putative peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR51-B] gi|219680543|gb|EED36892.1| putative peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR51-B] Length = 620 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 233/635 (36%), Gaps = 37/635 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R+ +++ AKI + ++ + F +GL L SG+S V V +++ + N+ + Sbjct: 1 MREGAKSTAAKIVIGLIVLSFAAFGLESLLPGGSGTS-VAEVNGEEISPAELQNAIASQK 59 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 ++Q G ++ + L+ L+ L Q D+G+ A + EI Sbjct: 60 RQLTQIFGDRIDPAMLDDERIRPSALEGLIERKLLLQHAVDLGMIASAQAIGEEITAIEA 119 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F D FS D + S LA G+ + + ++ L + + G S ++ A + Sbjct: 120 FQR-DGVFSPDQYKSVLANAGLTPERFRRMQSQDLMLSQLQGAISQSAFVSPSEMEAAAK 178 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + E R V Y+ A + ++++ +D + + YIL V + + Sbjct: 179 VWAEERDVRYLEAPLSDFDRPDSVDEAEIAEYYDNNQDRFVTEPAANVGYILLAVEDFYE 238 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEAD--------EAFQSLKKGKK 295 + ++ ++E +++Y + V ++ + +++D E + L G+ Sbjct: 239 P--VDEALVREQFEAVRDEYEVADQSRVSHILIIESDEDSDTSYADRVGEVARRLDAGED 296 Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F QLA E + G F+ + ++I SL+ G ++ + G Sbjct: 297 FGQLAMELSDDVGSAGSGGELGFTDGTAFPEPMEEAIASLS-VGAYSGPVETDAGTHFIR 355 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V F +++++ ++I+ A + L++ + + Sbjct: 356 VEERVAGERPDFATLREELEQAIKISNAERDLLLAVDELKDLTFNAPDLIGPAEALGFSV 415 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD--PLSKDHTVALPDGSYMWVQIKE 470 + + + + E+++ VF ++ + + L D ++ V++ E Sbjct: 416 AEEEELTRSNG-------VGVWADERVVDTVFSEEVYRGGNNSEVLELADSQFLVVRVNE 468 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 IPAR + L++V ++ KT + ++V + G+ I LG Sbjct: 469 QIPARQKPLQDVAGEIAAQLKTE-ARTAALTDFTEMVSQRLAAGETLEAIANELGYEWRV 527 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG-----P 583 R N + +S F + G + V ++ + G P Sbjct: 528 ELAAQRN---NTSLPREVLSTAFVMSDADSSAVELVELPGETIAVVQLARIREGDLQRMP 584 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +++ L + L + L+ + + V Sbjct: 585 NNAREQLQRQLASAGARIDLAEYVRALRQEAEIVV 619 >gi|53805225|ref|YP_113052.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str. Bath] gi|53758986|gb|AAU93277.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str. Bath] Length = 605 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 105/625 (16%), Positives = 241/625 (38%), Gaps = 42/625 (6%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 L+++ +PF WG+++ F + V VG + + +++Q+L + V Sbjct: 1 MLILVGIPFAFWGINNY-FDSGKEAPVAVVGDRDFFERDVVQAYQQDLANL-------VG 52 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 L ++ L+ LV + Q GL V I P F D KF D Sbjct: 53 LGDVDEKHLKRQALERLVRDELISQAAAGEGLAVPDSAVRAFIQTLPYFQ-TDGKFDKDK 111 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + L+ +G + +++ + L + ++ R + R ++++ Sbjct: 112 YNVMLSAQGTSSPVFVEQVKRALLMEQFQRGITDTAFVTRQQVEAFFRLKNQEREIEFVT 171 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + A + S + + +++ + D +++PE ++Y+L + + K+++ + +EL+ Sbjct: 172 VPLA--KADEEVSESSIDEYYRSHPDEFQSPETVSVNYLLLSLDDVAKEVKPTEEELRNF 229 Query: 257 YEKNKEKYFSPEIRTVEQLVF-------PNQKEADE----AFQSLKKGKKFIQLAEEQGK 305 YE+ K + + E R V ++ ++ A + L KG+ F +LA+E Sbjct: 230 YEEQKAGFTTEERRKVSHILVTVDPAKPEDEAAALAKIRQIRERLLKGEDFAKLAKETSD 289 Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 LG +K + + + + +L++ G+ + + SFGY + V+ + P+ T Sbjct: 290 DRVSAEKGGDLGVVTKGGM-EPNFEKAALALSQ-GEVSEPVRTSFGYHLIKVTELTPATT 347 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDL-PLVD 419 +++VK ++A R A + + ++L EF +++ ++ + + P Sbjct: 348 KPYEQVKDEVAAGFRRNAAENRFYDLGQKLTEFAFEHPDTLEPAAQALGLKVEETGPFTR 407 Query: 420 FAGKDVKGKE-VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 +G+ + E V + E++L V + + +++KE PA Sbjct: 408 ESGEGISADEGVRKAAFSEEVL--------GGKNSDVVEVGADKVVVLRLKEHRPAETMS 459 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L EV + + T ++ + A + L+ EGK + K + + R Sbjct: 460 LAEVRERIVSLLRDRATRQKTEALA-EAALKEMGEGKTLGGVAKAHNWKVTGPLTVRRDA 518 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KFISYLTQ 596 + + + + + + + P EKD L + Sbjct: 519 SGVAAAVVNAAFGTRELNRPIRVALENGDQAILRIAAIKEGEAAPEAEKDMETVRQSLAR 578 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDN 621 + + + +A ++ V + + Sbjct: 579 VAGQREFAAFMAEMRRSADVYIKPD 603 >gi|58617080|ref|YP_196279.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Gardel] gi|58416692|emb|CAI27805.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia ruminantium str. Gardel] Length = 630 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 129/638 (20%), Positives = 284/638 (44%), Gaps = 29/638 (4%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELG 65 S+ + AK+ L+VL + + LFS S V +G++K+ F ++ EL Sbjct: 2 KSKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELR 61 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 I Q + + E+ + +L+ L+ L +F + L+ V I F Sbjct: 62 YIQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYF 121 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-----LLD 180 ++ F F + L+ G+ E+ YI + ++ GG + + L L Sbjct: 122 QDENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGGPQNNYLQYYPDLTK 181 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFD 238 + + ++R+VD I ++ + I+ P+ L +E+ K ++ PE + I Y+ + Sbjct: 182 KILQNLHQSRTVDIIEISPV-INDISIPNMEELKSLYEEKKKNNSLVFPESRDIEYVTIN 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 K +S +E+ +E + + + LVF + +A+ A L GK F Sbjct: 241 YENFTTKATVSQEEIDSEIKAE----GLDDQIDILNLVFSAKSDAENALSELNNGKTFDS 296 Query: 299 LAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +L I+L + +K +PD + + +FSL K+G+ +P++H FG+ I V+++ Sbjct: 297 IVTDLAHSTLDKITLKNITKNTLPD-DIRNQVFSL-KEGEISPILHSMFGWHIIKVTSVH 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 QE+ K I+ ++ KA++ + + + + + + GTS+ EI++ + I Sbjct: 355 KISEHDLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNLP-IKTIT 413 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 D +G ++ GK+V+ + + G L++ + + V++ + AR++ Sbjct: 414 TDISGYNLLGKKVSISEANSNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQAREK 472 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTTNQIN 535 +E ++ +W+ ++++S +++++ K G + ++I L ++ N + Sbjct: 473 TFDESKQELVDEWQNNFKSKKLSKLTQEILIKL-KSGIDIQNIDGVLLKPNQVVYRNSVA 531 Query: 536 RMDNENKFFGYDGISQVFSGPVEMV------KCFPIENGLSYVVFK-VTNSKVGPVQEKD 588 +DN + + + ++++F+ + + P E + V K + N + + Sbjct: 532 SIDNPGQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPEQVSTVDLK 591 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L+ + L + +I YL ++YSV ++ LI+ Sbjct: 592 ATQEKLSNNNTESLKNQLITYLTNKYSVKINRKLIENI 629 >gi|331005209|ref|ZP_08328603.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC1989] gi|330420991|gb|EGG95263.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC1989] Length = 635 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 105/637 (16%), Positives = 231/637 (36%), Gaps = 30/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R ++ A + +L +P + G+ + + S V + + Sbjct: 1 MLQGMRNKTKGLTAVFLIGLLTIPLALVGVENLFYGSSTVGEAAEVDGTIITERDVQLAI 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +E + + G + ++ L + ++ +LV + E + + I Sbjct: 61 SRERQRLQSQFGENLPADFFTDERLRESVMSSLVQRTLMINIAEKGDMTFSDTEIDKTIV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P+F + F F+ + G + L + V ++ +D Sbjct: 121 DLPIFQLE-GNFDQQRFLQGVRNLGHTPASFRTLLKNDLLANQMQNAIVASDFITDKEID 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y+ L +P S+ ++ ++ K+ Y + E I YI +V Sbjct: 180 SVVSLSRQTRDFSYVTLPLGELPQEMTVSDEEISTRYDLNKNQYLSTEEVAIEYIELNVA 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKKGKK 295 EK I I+++ +Q +Y+ Y + R ++ EA + + L G Sbjct: 240 SIEKDITITDEAIQQQYDSIVASYNATTQREAAHIMIEGDNEAAQQKIISVKEQLASGAD 299 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA E +LG + + P+ + +++ SL + G + + Sbjct: 300 FSALASEYSDDFGTRDNGGNLGVSAGDGFPE-AFEEALLSLTE-GQVSEAVEIDGATHFI 357 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + + +F K I ++++ +A E+ D + LEE ++DE++ I Sbjct: 358 KLIALTEKTAPTFDSQKIKIESELKRAQAEEQFILDLQTLEELAYNAENLDEVAAELGIS 417 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIK 469 +I L V I +++ F + K ++L + V++ Sbjct: 418 AIKTGLFTRD----NAATVDTILQDSRVVDAAFSEQVVQEKHSSDLLSLSSDKSVVVKLL 473 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 E P R L+E D+ + + K +++ +A L E + G + + + G ++ Sbjct: 474 EHKPVRTLTLDEKRGDIVAELQLEKAKAQIAEQARALR-EALETGTDITTLAEEKGVAIS 532 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNSKVGP--- 583 T + R + ++ VF +E + YV+ ++ G Sbjct: 533 TQKEAQRNTT---GVPEELLASVFEMSHPTDSPVLLERHLDNGDYVIASLSQVTSGNTEG 589 Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +E+ F S L+ ++ D + A L+++ + + Sbjct: 590 LTEEERASFRSSLSSGISGDEYRAWQAQLEAEADINI 626 >gi|87121304|ref|ZP_01077194.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp. MED121] gi|86163461|gb|EAQ64736.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp. MED121] Length = 611 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 113/642 (17%), Positives = 243/642 (37%), Gaps = 48/642 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ V KI + + V F ++G+ + + S TV V ++ + + S Sbjct: 1 MLQDIRDKSQGIVVKIIIGFIVVTFALFGVDALVTGFTTSDTVAEVDGVEITRTELLQSA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +G ++ L ++ LD L+ A L D+ L +V + Sbjct: 61 EIQRRQLISMMGGQIDPALLEDTLLQRRALDELIQRAVLTNNANDLNLAVSDAQVDQYLI 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 ++ F D +F +++ + G + + + + +D Sbjct: 121 QAEQFQ-TDGQFDQTKYLNFIRTLGYTPLAFKQRIKQDILLQQGRIALSSSEFVLSNQVD 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + RS DYI + A+ S+ + +F++ +++ PE ++ Y++ Sbjct: 180 QVLKLQNQQRSYDYIRYSLADEVALTQVSDTEIQAYFDENTQSFQNPEQVKLDYVIISSV 239 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------- 292 + K+ +S+ EL+ Y+ E R L+ N + +DE ++L + Sbjct: 240 DFHDKVNVSSAELEQAYQAATSTAPKEERRASHILIEANDQRSDEEARALAQDIKSKIDS 299 Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G KF LA++ L LG S + + +FS+ + V+ FGY Sbjct: 300 GTKFEALAKQYSDDLGSKAAGGDLGYVSSGMMV-PEFENVLFSMV-VDQVSGVVETEFGY 357 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + I T S E++ ++ ++ KA + + + + + ++ ++ Sbjct: 358 HLIELREITNVDTPSLAEMEPELTQEILDRKAQDALLSAQEDITDLAYASDDLNALATEY 417 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 +++ D+ G+ + +++ F +D L+ + L + V+I Sbjct: 418 N---VNIMHSDWFGRQGGQELISSNAQAIAAAFSPELLEDSLNSG-LLELNEEQVAIVRI 473 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 E P + LEE DV++ K + KA Q+ + + ++ Sbjct: 474 NEHKPQSNMSLEEASADVQEILLKRKATASLKQKAAQMQADVNNSAWTRVELASR----- 528 Query: 529 LTTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGP 583 G D IS++ + P V ++ N V+ + K G Sbjct: 529 ----------------GRDDISEIVFKMARPQGDVATSKVQSLNDGDLVLVNLLEVKDGE 572 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 V E D Y+ + +N+ + +A + + L++R Sbjct: 573 VGEDDAQRDYIERYLNQSGVSLAVAAHQKALE---NAALVER 611 >gi|51244848|ref|YP_064732.1| peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila LSv54] gi|50875885|emb|CAG35725.1| related to peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila LSv54] Length = 634 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 116/643 (18%), Positives = 254/643 (39%), Gaps = 34/643 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+I R +++ +I +VV+ + F+ WG+ + + S + V +++ F ++ Sbjct: 5 MLQIFRNKAQSIFIQIIVVVIALVFIFWGVGANMMN--KSEAAIVVNGEEISLQQFQQAY 62 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Q +S + G V A ++GL ++++ LV L Q + +G++ + I Sbjct: 63 DQAFQQLSDQFGGKVPKGMADALGLKDQVVNRLVQQELLRQGGKQMGVQLSAVEIQHAIQ 122 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLL 179 P FH KD F + S LA ++ ++ + + S+ + Sbjct: 123 AMPQFH-KDGAFDVKSYNSILAANRLSPSKFEANIRHDMLAEKTARAINEFSAHASDFEI 181 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ E SVD+ + + + L QWF++ KDNY+ +++Y+ +D Sbjct: 182 EEFYGQANEGVSVDFASFSPKDFSSQVSVEEPALAQWFKEAKDNYKKSPEVKLTYLAYDY 241 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAF 287 ++KI + + Y+ + + E R ++F K+A+ Sbjct: 242 ATIQEKISLDEAAINNYYQSHLNTFRLAEKRHARHILFVVSPGDSDEKQQAQLKKAENVL 301 Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + + + F QLA + + S LG F++ + AD++F+L K GD + ++ Sbjct: 302 KKAQADEDFAQLARQFSEGPSKSEGGDLGFFARAEMI-PPFADAVFTL-KNGDISGIVKT 359 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 +FGY I + I+ + T S +V++ IA ++ +A + E + ++ Sbjct: 360 NFGYHIIKLEGIQEAKTKSLDKVREQIALSLQQDQAKALAFQLANNAYEGIIGAGNLQ-- 417 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + +K D+ + + + F + + ++ D Y Sbjct: 418 AYTKKHPETPAITTDYFSQQNPPANLKDNKLFLEKAFAL-----GKKELSSLLQTDSGYA 472 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 + + + L +V +D++ E KA + + + + F + + Sbjct: 473 VIYVDDINTPATPTLAKVRDRATEDYRNYLANELAKKKAEEFLKGLHEGKETFTTLAEQT 532 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVF----KVTNS 579 G T+ + R ++ F + Q+F P + + SY V+ + T S Sbjct: 533 GVQTEKTDFLLRQ-GDSGTFPQTLLEQIFLLSPQKTSPDTIGQADGSYYVYSYIGRNTPS 591 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 EK+++IS + + LL + + + + + + +L Sbjct: 592 ASLTAPEKERYISGILNNKQQMLLSAWLIFQQKNAQIERNQSL 634 >gi|296535271|ref|ZP_06897478.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296264392|gb|EFH10810.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 507 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 116/510 (22%), Positives = 220/510 (43%), Gaps = 7/510 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +R+ + TW AKI +L + F +WG+ D + ++V VGR + + Sbjct: 1 MLTALRRLAGTWFAKILFALLVLSFAVWGIEDIVRQFGSDTSVARVGRDAIEVPEAQAAA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++E+G + +++G L ++ ++ LV Q +GL V + Sbjct: 61 RREIGRVQRQLGGSFEITPEMGEALTRQAVEGLVMERVQRQEARHLGLAVPEAAVRDYVW 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F G D +F+ F S L ++E E++ L R +VG G + L Sbjct: 121 GIPAFQGPDGRFNRIAFDSFLRNNQLSEGEFLTLLRADLERQQMVGAVRAGAAGPDALTR 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + + L P A P A L ++ E D + APEY+R++ + Sbjct: 181 PLLAWEREQRLAEIVRLPFSAAPEPAAPEEAQLRRFHENNADRFSAPEYRRVTLAVLSPE 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-IQL 299 ++ + +EL+A YE +++ Y PE R+++Q + P++ +A+ + ++G F Sbjct: 241 TVMGDVQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGADFAAIT 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG + +P LA++ F+L + G + + FG+ + HV+ I Sbjct: 301 QAAEAAGGQATELGESDRAGLPLPELAEAAFTLPQGG-VSEPVQSPFGWHVVHVTAIAAG 359 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 F+ V+ ++ Q++ +A++ E ++E+ LA G S+ E++ R + + +VD Sbjct: 360 EDRGFEAVRPEVEAQVKRERAADLAYERANQVEDALAAGGSLAELAPRFGL-GVAQAVVD 418 Query: 420 FAGKDVKGKEVAAIP---YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 AG+ +G + AA+P + R + +++E IPA Sbjct: 419 AAGRTPEGAQ-AALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTALFAFELQEVIPAAL 477 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 R E V V+ + +A L Sbjct: 478 RPFETVEPQVRAAYLADARRRAQEERAAAL 507 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/271 (11%), Positives = 71/271 (26%), Gaps = 26/271 (9%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V + +++ + R + + + K D + + + Sbjct: 246 VQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGADFAAITQAAEA 305 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 + D G + +L F V P G + V + Sbjct: 306 AGGQATELGESDRAGLPL------PELAEAAFTLPQG-GVSEPVQSPFG-WHVVHVTAIA 357 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL---- 528 DR E V +V+ K + A+ +ANQ V + G + ++ G + Sbjct: 358 AGEDRGFEAVRPEVEAQVKRERAADLAYERANQ-VEDALAAGGSLAELAPRFGLGVAQAV 416 Query: 529 -----LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 T + + VF+ + + F++ Sbjct: 417 VDAAGRTPEGAQAALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTALFAFELQEVIPAA 476 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 ++ + + + +A + + Sbjct: 477 LRPFETVEPQVR--------AAYLADARRRA 499 >gi|190570945|ref|YP_001975303.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357217|emb|CAQ54634.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 599 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 134/605 (22%), Positives = 272/605 (44%), Gaps = 35/605 (5%) Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86 G+ + L + + VG++ + + ++ IS G V+ E+ + + D Sbjct: 21 FMGIGNLLSNDDERKELAKVGKEVITSDEYKLLYQNYKKQIS---GSDVSKEQVKKLKYD 77 Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146 +L+ L+ L I ++GL+ + I + F +F H+ F L I Sbjct: 78 --LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGEFDHNKFHQTLNSLHI 135 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVP 203 EKEYI+ K+L + P + +Q + ++ R VD + + + Sbjct: 136 TEKEYIEKLEKILPAMMFMTSLFKDNYPVTFGEGVDEQIYKNRYQTRVVDIVKITEDAIT 195 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 + +P + L +E+ K N+ PEY+ YI D E +I IS++E+ + E + K Sbjct: 196 DVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELK 255 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK-SLSDISLGSFSKEYIP 321 R + ++FP +++A+ A ++L++ K F Q+ EE K L + + + +K+++P Sbjct: 256 ----NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNNITKDFLP 311 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + ++ + +F+L K G+ + V+ +FG+ + V +I ++KKDI + + K+ Sbjct: 312 E-NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVLTNQKSF 369 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 EKV + ++ + G +++EIS + + VD +GKD G EV + Sbjct: 370 EKVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASGKDQSGNEVGN---SSDFIS 426 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 +F ++ K + + D + + V+I + +P + + EE K W++ E + Sbjct: 427 FIFSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEESRESAIKLWRSEFIKERMFK 484 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561 ++ ++ ++ D+ + G L+ QI R + + + + I ++F+ Sbjct: 485 MGQEVAVQLREK----TDLEEMQGIKLVKGQQIQRNE---QNYPFSFIEEIFNMKTTNSV 537 Query: 562 CFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 PI+ N + V K +S G + D + L + +I+YLKS+Y V V+ Sbjct: 538 TDPIQYNNEIIIGVLKQMHSSNGKLNMLDTGKRVMI-----SLKEQLISYLKSKYRVEVN 592 Query: 620 DNLIQ 624 +I Sbjct: 593 HAMID 597 >gi|254499150|ref|ZP_05111837.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351629|gb|EET10477.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 624 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 111/638 (17%), Positives = 246/638 (38%), Gaps = 39/638 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S +++ V+V + + +F ++ Sbjct: 1 MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYFQSHQTTNSKVTVNGEPLTEQAFEINY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ GM + + +E + L ++LD +V+ + Q G + I Sbjct: 61 RRARGM---QDIAQMTAEDEKK--LQNQVLDQMVTNEVMVQAAHTNGFNVSLNQANAAIL 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D FS + + L+ + + + + + F+G ++ Sbjct: 116 NIPQFQ-EDGHFSSEKYQQALSAALFTQLSFQNEVKQGMLLNQQRFAFIGSSFALPDEIE 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + Y +NR DY+ ++ A S + ++++++ + APE + Y+L ++ Sbjct: 175 RFVKLYMQNRDYDYVTISAARFEKDAHVSPEAIADYYKQHQKEFMAPEQVSLDYVLLSMN 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 +K I+IS+D+++ Y +N+ Y +P V ++F QK+AD+A+ Sbjct: 235 NIKKHIKISDDDIKRFYNENQNNYLTPAQWQVAHILFATPEDVSKDELDQIQKKADDAYA 294 Query: 289 SLKK-GKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +L+K +F +L LS G+ + +L K G+ + Sbjct: 295 ALQKDPAQFEKLVTTLSDDKLSVAEKGALPWITAGQNDYDKILSNLTKPGEISAPEKTKH 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I + KP S EV+ I Q+ A + ++L + S++ +S Sbjct: 355 GYEIFKLIAYKPVTMKSLAEVETTIKEQLLAEMAQTQYAHALEQLSDLSYQSPDSLNPVS 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 K+ P+ AG + AI + ++ F D + + V L + S Sbjct: 415 DAMKLKIEKTPVFSRAGGN------DAITKNQLVINAAFSHDVLELGNNSEPVQLDNDSV 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + V++ E +++ LE V + K + L+ E K + Sbjct: 469 VVVRVNEHRAEKEQSLEAVQAQINKILIKQVAEAKAKELGKNLLD--PTESKEQEKLMST 526 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 + + +R ++ D F+ + + YVV ++ + G Sbjct: 527 HKLTWNSVEHASRDSDKADVLIND---AAFNLLRPQSRNGIVLPNGDYVVVRLKHINDGN 583 Query: 584 V-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + +++D + + D L +Q + Sbjct: 584 LNTLDKEQQDSLVQQIEASSGMMDYDLYAKSLINQAKI 621 >gi|329894935|ref|ZP_08270734.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC3088] gi|328922664|gb|EGG29999.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC3088] Length = 624 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 108/637 (16%), Positives = 231/637 (36%), Gaps = 30/637 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR +++ V K+ + ++ + F ++G+ L S +V V K+ + Sbjct: 1 MLQDIRNSTQGPVFKVIVGLIVLSFALFGVESILLGGS-DDSVALVNGDKIRAVEVQQAA 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ I+ +G + L + L+ LV Q+ E +GL A ++ ++A Sbjct: 60 NRQKQQIAAMLGENFDPSLIDDAQLSARALEGLVGNKLQQQWAESLGLTASDVQLGAQVA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D KFS +++ LA G + + + G + + Sbjct: 120 AIPAFQ-IDGKFSAELYKQSLAAAGFTPLTFREALRVDEIVKQLNGGLLASEFVTGAEAR 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R E RSV Y + + + + +++ + + E + YI Sbjct: 179 ALARVNGETRSVRYAKVAGDRFQNTVEITQDQIQAYYDSNAAQFVSEEAVVLDYITLRAD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQS--------LK 291 + + ++ +L+A YE+ Y E R L+ EADEA+ L Sbjct: 239 DFVEP--VAEADLRAAYEQEISSYAYQDEARVSHILLIQGDDEADEAYAQRIQSAQTALT 296 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +AE + G S LG + + P + ++I L + + + G Sbjct: 297 DGEAFSVVAERLSDDIGSSSDGGDLGYTAGDVFP-AEMEEAIKGLDIN-EVSGPVLTDAG 354 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + V++ + S SF E++ ++ + A ++ + L++ T + E ++ Sbjct: 355 THLITVTDRRSSEPPSFMEMRSELEASLSQADAQRRLVSQVEALKDLTYTATDLREPAQT 414 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + + + G G+ V F ++ + + + +++ ++ Sbjct: 415 LGLDVVRSGPITRRG----GQGVLGDDRVIAAAFSDLVIEEGW--SEVIEVSENAFVALK 468 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + E PA + +E+V + E + + N+L+ + + G+ DI + Sbjct: 469 LVEHQPAAPQSIEQVSDRIVSVLTAQAEEEALRAFGNELLDQLA-GGRTIEDIAQEHNLE 527 Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS--YVVFKVT--NSKVGP 583 Q R + I S + +NG + Y VF V + + P Sbjct: 528 WQVALQSRRGSADIPRQWQANIFAESSTGLPRRNFAVGDNGDALLYEVFAVQAGDEEALP 587 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 S + + L + L+ + ++ Sbjct: 588 ETLFAAMKSRQLRGLQTALQRGLSETLRDNADIEIYQ 624 >gi|121609649|ref|YP_997456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] gi|121554289|gb|ABM58438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] Length = 643 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 105/648 (16%), Positives = 225/648 (34%), Gaps = 48/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E IRK S+ + +FL ++ F++ G FS + S V V + + + + Sbjct: 1 MFETIRKHSKIVMIFLFL-LIIPAFVLVGTDRNYFSEA-SPVVARVDGHDISQADWDRAH 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +QE I + V++ S L+ LV LD + + L R+ + Sbjct: 59 RQESDRIRAQSP-TVDARLLDSPLARYATLERLVRERVLDAAAQQMRLVTSDARLIRSLQ 117 Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +P D D + + L +G+ + + + + ++ V+ + +N Sbjct: 118 ETPAIAALKRADGTLDADAYRALLVGQGVTPEVFEANLRRNIAADQVLDAVLSTALVANA 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A +E R + + P++A L +++ + +R PE + Y++ Sbjct: 178 QARLALDALYERRDIQVARFDAPDFAGRVLPTDADLQSYYDAHPAQFRQPEQATVEYLVL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--- 293 D+ I + DEL++ Y+ + + + + R ++ K+A A + K Sbjct: 238 DLDSVRATITVPEDELRSYYDSDYLPRIMAKQERRASHILISVAKDAPAAEREKAKARAT 297 Query: 294 ----------KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 F LA+ ++G + + L F++ + +++F+L KKG + Sbjct: 298 ELLAQLRKTPADFAPLAKQSSDDKGSAAAGGDLNFFARGAMTKP-FEEAVFAL-KKGQIS 355 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-G 398 V+ FGY I +++IK F+E + IA ++ +A + E + + Sbjct: 356 DVVETEFGYHIIELTDIKTPPQPGFEEARAVIAAELGQQRAQRQFAEMAESFSNAVYEQA 415 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--V 456 S+ ++ + K+ V + L +F D +K +T V Sbjct: 416 DSLLPVADKLKLKLQSATNVSRTP----APGAKGALASSKFLQALFAPDTLQNKRNTEAV 471 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 + ++ PA L +V V+ + K+A + Sbjct: 472 EIGPQQMAAGRVTSYTPASTLPLAQVRERVRSLYVAEKSAALAQQEGQ----------AK 521 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVF 574 + + + + I P + + + + Y V Sbjct: 522 LSAWKADPATATGLAAATEIARGQGQNLPRPVIDAALRTPADALPAWTGVDLGAAGYAVV 581 Query: 575 KVTNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 K+ + Q + Q + + + + LK + V + Sbjct: 582 KINRVLARQAPDAQRAQQEQQQYAQWLARAEVLAYYELLKQRLKVRIQ 629 >gi|254418312|ref|ZP_05032036.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3] gi|196184489|gb|EDX79465.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3] Length = 635 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 112/635 (17%), Positives = 240/635 (37%), Gaps = 20/635 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ R SR+ A LV++ + F+I G +F+ G V+ G + + + F ++ Sbjct: 1 MITAFRAFSRSKWAAALLVLIAISFVIVGARMDVFANLGPKHVIDAGDRSMNEAEFSAAF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + I Q+ G V +E + + + LD+ + G+ + +I Sbjct: 61 GRVRENIQQQAGRPVTNEDLIAENIHTRFLDSQTEQFGFLNWAWKAGIRPGKELIVKQIR 120 Query: 121 RSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + P F +F + S LA++ + + G R + Sbjct: 121 QIPAFFNSVTGQFDQQAYESALAQQNLTPAMLEQDLRDQYATEHFGAAIFAGARAPRIYG 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 FE R + + I P++A L + ++ RAPE++ +S +LF Sbjct: 181 ALLAGAAFETRDGRWFEVTPAMAGEIPAPTDAQLNAFIQENAARLRAPEFRMVSVVLFTP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +S++ ++ +E K+ PE RT L P++ A + +L+ G+ + Sbjct: 241 DPGAAPV-VSDERIRERFEFKKDSLGKPETRTFVTLTAPSRDVAQKIAAALRAGQSPADV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + ++ + + D + A ++F L + + + G+ +A V+ I+P Sbjct: 300 GRANSIQPASFNV--TPRAAVGDAATAAAVFGL-QVNQVSDPVQAGVGFAVAKVTAIQPG 356 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + + ++ I ++R + ++ E G ++ + +R IDLP Sbjct: 357 QPATLENSREQIVAELRAEDVKGQTYAKVEKYEAARTAGKNLADAAREAGGRVIDLPPFT 416 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 GK G+ + A P Q+ + D + G Y V++ + P+ L Sbjct: 417 KDGKLPNGQALNAPP---QVFETAWSLTKGGESD-VIDAGQGQYFAVRVNDIRPSALPTL 472 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 EV + W + + +++KA +L ++G++ + +++ A L + R Sbjct: 473 AEVRAPLAAQWTQREISRRLAAKAEEL-ASRVRQGQDIAAVARSVNAPLTVRTGVVRDQA 531 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599 + G + +F V P E G Y+V +V + Sbjct: 532 TQESLGQGVLQGLFGQAKGQVFSQPGEGG--YLVGRVDGVHAANPAVAGPLAEQARPRIT 589 Query: 600 KDLLDSVIA------YLKSQYSVTVHDNLIQRYLD 628 ++L+ +++ +S+ V L ++ L Sbjct: 590 QELVQAMVQTEMTAGAQRSKAKNDV--ALARQALG 622 >gi|34498008|ref|NP_902223.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC 12472] gi|34103863|gb|AAQ60223.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC 12472] Length = 612 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 112/641 (17%), Positives = 231/641 (36%), Gaps = 63/641 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E ++ V ++ L + + F+ +G+ S + +V VG+ K+ + Sbjct: 1 MFEFVQNNKT--VIQVILGAVALTFVGFGVGSY-SSATDDPYLVKVGKTKIYKRDLDRAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + L+NL+ L D G ++ IA Sbjct: 58 EGQPS----------------DPATRQAALENLIRQELLLAEARDHGAAVSPDQLRKAIA 101 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ +FS + L N + + ++ + + G SN ++ Sbjct: 102 SIPAFQ-ENGQFSAQRYSEFLKSRYPNPEAFEADISRDILLQSQLSSVAGTQFVSNTVVT 160 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E R + +VL + A + +++ + PE ++ Y++ Sbjct: 161 RVAGLLGEGRELQPLVLKPSDFASEVKTDAAAIKAYYDANAKRFSLPEQVKLDYVVLSQD 220 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---------EAFQSLK 291 + I++S+ E+Q Y+++K E R ++ K+A EA LK Sbjct: 221 ALAQGIKVSDAEVQKYYDQHKADLAG-EQRRASHILLTVAKDAKPEQKAKVKAEAEAILK 279 Query: 292 ----KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 KF +LA+ + G + LG F + D++F + K G + ++ Sbjct: 280 EVRVNPAKFAELAKAKSQDPGSAEKGGDLGFFGHGMMVKP-FDDAVFKM-KPGQISDLVE 337 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +G+ I + +K S +VK + ++++ KA+ E +L E D Sbjct: 338 TEYGFHIIRLDAVKS---QSLDDVKGAVVDKLQKQKAAALFHEQAGKLNEIAYQQA--DS 392 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDG 461 + + +++ D+ ++ ++ + +LL VF D K V + Sbjct: 393 LKGVVDALKLEVKHSDWVRRNQPSQD--ELLGNAKLLSAVFSDDVLKKKHNSEVVDIGGN 450 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + +I E P R + L +V ++K+ A+ K L+ E K GK Sbjct: 451 RLVVARIAEHQPERQQPLADVTDAIRKELVERDGAKLADKKGQALLAEL-KAGKGVDAQ- 508 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579 ++R + VF+ + F + YV+++V Sbjct: 509 -----KWGPAATVSR--RAAAGMPAADVRAVFAVAGSKLPGFAGVRHDTGEYVIYRVNKV 561 Query: 580 KVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P +K + + L ++ L S + L+ +Y VT Sbjct: 562 IPAPAVTDADKAQLGNVLGELSANSQLASYLKALREKYPVT 602 >gi|332284237|ref|YP_004416148.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7] gi|330428190|gb|AEC19524.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7] Length = 655 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 121/663 (18%), Positives = 245/663 (36%), Gaps = 46/663 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + IR + + + LV++ F++ G+S VSG +V++G + F + Sbjct: 1 MFDFIRTH-QRLMQLVLLVLILPSFVLIGVSGYTNYVSGDHDIVTLGDTSITQQDFDQAR 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + +L + Q + S +L++L+ L + + IA Sbjct: 60 RNQLQQLQQSSQGAFDPAILDSPAARSALLESLIDRTVLVETATKERFSVSDSVLRQTIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P D +FS + + LA G+ +++ L+ V+G ++++D Sbjct: 120 SMPQLQ-VDGQFSAERYNDVLASAGLTTRDFEQSQRGELALGRVLGPVTMTASVPSVVID 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + K E R++ + ++A + W+EK K + PE Y+L + Sbjct: 179 KLKLALTEQRTIRLLAFPAAEQEKEVQITDADIQDWYEKNKQSLELPEQLSAQYLLLNEE 238 Query: 241 EKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLKKGKKFI 297 + +IS+++LQ YE+NK +Y P V + +A EA ++L K + Sbjct: 239 AAMANLPQISDEDLQKYYEQNKARYVQPARVNVSHIQINIPADASEAQRSEALAKAQDIA 298 Query: 298 QL---------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + +++ G + LG +K P L +F+L K G + + Sbjct: 299 KRAQADAAAFAELAQNESQDAGTAKEGGKLGWITKGSWP-AQLEQVVFAL-KAGQVSDAV 356 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSM 401 G GY + + ++ SF+E K + ++ +++ + +L + S+ Sbjct: 357 EGPGGYHVFLANEVQAEKGESFEEAKAKVQAEVSRQLGADRYADMATKLTSLVYDNPDSL 416 Query: 402 DEISRREKIVSID--------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS-- 451 + + L D D A + + R L+ Sbjct: 417 QAAADELGLKVKTATGIARDRLLASDEVPADAASASEDAALLDDVRVRRALFSPQVLNEK 476 Query: 452 -KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + + + M V++ PA +L +V +++ KT + + +A Q+ LE Sbjct: 477 QNSGVIEISPDTMMVVRVANVTPAHVPELAQVSDHIREQLKTERAL-LAAEQAGQVALET 535 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL- 569 K+ + T +++R+D + F+ E + + G Sbjct: 536 FKKQDP-----SQVPEGFGTPLEVSRID--PQGLDQAVTDAAFNVSTETLPVYTGVKGSQ 588 Query: 570 SYVVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 YV+ +V + K G V L Q + +V+ +++Q VT+ Q L Sbjct: 589 GYVLVRVESVKPGDVDNPLLAGLPMQLDQAWGQAEEQAVLEAMRAQAKVTLLPEA-QEAL 647 Query: 628 DGE 630 GE Sbjct: 648 AGE 650 >gi|254428426|ref|ZP_05042133.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881] gi|196194595|gb|EDX89554.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881] Length = 632 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 116/637 (18%), Positives = 245/637 (38%), Gaps = 37/637 (5%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + K+ L + +PF+I G S V V K+ S ++ M+ ++ Sbjct: 1 MGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRSVVNQRVERVRNMLREQSP 60 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + N S + +LD +V+ + E + +V +I + PLF +D KF Sbjct: 61 NM-NPALLDSFVRPEMVLDGIVNEQLILAAAEQSSMVFSEQQVAADIYKVPLFQ-EDGKF 118 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S F L G+N + YI + + + F+ L++ +R ++R + Sbjct: 119 SEQRFERELRARGMNPQSYIQGLRQDMIKEQFRAGFMQTDFSLPSELNEQRRLGEQSRDI 178 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 Y L+ + S+ + ++++ + + PE ++SY+ + ++ +++++ Sbjct: 179 RYAQLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVELSADKYADQVSVTDED 238 Query: 253 LQAEYEKNKEKY----FSPEIRTVEQLVFPNQKE---------ADEAFQSLKKGKKFIQL 299 ++AEY+ K R V ++ + A EA +++ G+ F Sbjct: 239 VKAEYDVRKSIMEEAGAGDAPRQVSHILIEVNDDRDLEQAKVRAREAAKAIAGGESFADA 298 Query: 300 AEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS- 354 A + G + S LG SK +P+ + D+I LA G + + G + V+ Sbjct: 299 AAQYSDDSGSAQSGGDLGVVSKGALPE-EMEDAIADLAS-GTVSAPVVTDAGVHLIKVTQ 356 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 S E+ I ++ +A + +D +LEE L + + + + Sbjct: 357 EETARALPSLAELSDQIRADLKKARAEALLNDDVAKLEELLYEHADLQSPAEQVGTSVVT 416 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 VD A D ++P +Q L ++ + D + + Y+ V+I E+ Sbjct: 417 TDWVDLAAADAP----LSLPQVQQALNSDQVREQGHNSD-LIEVDPTRYIAVRIAENKSP 471 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 EEV +++ K ++V N+ + +G + + G + + Sbjct: 472 EPMPFEEVSFAIRERLKGEHAMDKVQQL-NEDAQKSIDDGADLAAVADLFGVEVEEQEGL 530 Query: 535 NRMDNE------NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 R E N FG + + PV + + ++Y V +V + P+ + Sbjct: 531 QRGGAEPSMEVVNGAFGAPRFEEGEASPVALTRLGDGSV-VAYQVTRVADGNAEPLSDAQ 589 Query: 589 KFIS--YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + L + + V+A L+ + V +H + + Sbjct: 590 QQAALVELANVEGQRNFRQVVALLRDEGDVELHPSRL 626 >gi|213019460|ref|ZP_03335266.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994882|gb|EEB55524.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 578 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 134/603 (22%), Positives = 272/603 (45%), Gaps = 35/603 (5%) Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88 G+ + L + + VG++ + + ++ IS G V+ E+ + + D Sbjct: 2 GIGNLLSNDDERKELAKVGKEVITSDEYKLLYQNYKKQIS---GSDVSKEQVKKLKYD-- 56 Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148 +L+ L+ L I ++GL+ + I + F +F H+ F L I E Sbjct: 57 LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGEFDHNKFHQTLNSLHITE 116 Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVPAI 205 KEYI+ K+L + P + +Q + ++ R VD + + + + Sbjct: 117 KEYIEKLEKILPAMMFMTSLFKDNYPVTFGEGVDEQIYKNRYQTRVVDIVKITEDAITDV 176 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 +P + L +E+ K N+ PEY+ YI D E +I IS++E+ + E + K Sbjct: 177 PEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELK-- 234 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK-SLSDISLGSFSKEYIPDV 323 R + ++FP +++A+ A ++L++ K F Q+ EE K L + + + +K+++P+ Sbjct: 235 --NQRDIFNVIFPTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNNITKDFLPE- 291 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 ++ + +F+L K G+ + V+ +FG+ + V +I ++KKDI + + K+ EK Sbjct: 292 NMREKVFAL-KTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVLTNQKSFEK 350 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 V + ++ + G +++EIS + + VD +GKD G EV + + Sbjct: 351 VNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASGKDQSGNEVGN---SSDFISFI 407 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 F ++ K + + D + + V+I + +P + + EE K W++ E + Sbjct: 408 FSREKD-QKSYFKGVGD-TVVGVKISDIVPPKLQNFEESRESAIKLWRSEFIKERMFKMG 465 Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 ++ ++ ++ D+ + G L+ QI R + + + + I ++F+ Sbjct: 466 QEVAVQLREK----TDLEEMQGIKLVKGQQIQRNE---QNYPFSFIEEIFNMKTTNSVTD 518 Query: 564 PIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 PI+ N + V K +S G + D + L + +I+YLKS+Y V V+ Sbjct: 519 PIQYNNEIIIGVLKQMHSSNGKLNMLDTGKRVMI-----SLKEQLISYLKSKYRVEVNHA 573 Query: 622 LIQ 624 +I Sbjct: 574 MID 576 >gi|320354707|ref|YP_004196046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus propionicus DSM 2032] gi|320123209|gb|ADW18755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus propionicus DSM 2032] Length = 626 Score = 326 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 113/643 (17%), Positives = 243/643 (37%), Gaps = 36/643 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IIRK +++ V + +V++ + F+ WG+ L + V V +++ + F ++ Sbjct: 1 MLNIIRKNAQSIVVQSIVVIIAIVFIFWGVGTNL--NDNPNAVAVVNGKEISYRDFQQNY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + Q+ G + + S+G+ ++L+ L+ L Q E +G+ +I Sbjct: 59 ERAIEGYKQQFGGQLPEKFVESLGVKDQVLNQLIQSELLRQGAEKMGMTISKEATQRKIQ 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +F ++ +F D + + LA+ ++ + L V S LD Sbjct: 119 DLEVFRDENGRFDLDRYKTVLAQNRLSPTSFEAGIGNDLLMNRAVESLGAFATVSAAELD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 F + + Y + + +A L W+E+ K Y+ P +++Y+ F Sbjct: 179 NWVEFLDQEVKLAYTTVRSSAYEPQVKVDDASLQSWYEQTKQQYKTPPQSKLAYLSFPFA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288 + K + ++++ +Q Y+++ E Y +PE R ++F A++ Sbjct: 239 DDLKAVAVNDEAVQRYYQEHAELYATPEQRRARHILFKIADGDTAETKAAKKAAAEKVLA 298 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 ++ G F LA++ + S LG FS+ + + S+FSL + G+ + V+ Sbjct: 299 QIRGGGDFALLAKQFSEDTSKEKGGDLGFFSRGQMVEP-FERSVFSL-RTGEISGVVETP 356 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +GY + + IKP+ T S +EV+ I ++ + E + S+ + S Sbjct: 357 YGYHLVKLEEIKPATTRSLEEVRASIRAELERQGVKAITFKKASTAYEEIIRAGSLTKYS 416 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + + + + P Q F + V G Y Sbjct: 417 EKNAVAVHRTDFFQQ--DKPPKDTLISDPAFLQSAFAL----HKGELSSIVETATG-YAI 469 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + ++++ + +L V V D+ K+ E S A Q++ ++ + D+ Sbjct: 470 IFVEDARESVVPELAIVRERVAADFIKEKSVELARSAAEQMLKTAKEQQRFPSDV----- 524 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 + + R N I G + ++++ S+ G Sbjct: 525 -ERKESAYLKRTGPANGVPEEIRRDAFARLGQGAFPDKVIVEGNTCYLYQILESRRGQGD 583 Query: 586 EKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQ 624 L Q + L+ I L+ + + + ++Q Sbjct: 584 TDAAKRQALEQQLLAAHKNTLMADWIDQLRKEAKIWTNTKMLQ 626 >gi|254785729|ref|YP_003073158.1| peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901] gi|237683903|gb|ACR11167.1| putative PPIC-type PPIASE domain protein, peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901] Length = 624 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 97/634 (15%), Positives = 214/634 (33%), Gaps = 27/634 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVL-FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R + + + +++ +P +I G+ + + V + + Sbjct: 3 MLQSVRDNLKGTIVSVIVILFFILPMVITGVGSSFLGSVAGTDAAVVDGRSITKKELSRE 62 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + + G +++ + L + +L+ L A + E G+ + G I Sbjct: 63 IYMQKQRLLAQQGVDPSADYLKDENLAQPVLERLTRKAAVLAAAEKGGMAVSEKSINGAI 122 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F D KFS + S LAR G+ Y + + + + Sbjct: 123 VGQEEFK-VDGKFSSQQYRSLLARVGLTPAAYKAATAEEMMLGQLNKGLELSSFVTEKEK 181 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E RS + + + + ++A + +++ + +R PE + YI V Sbjct: 182 SEIIAIINEKRSFFTVKIPADDLADSIEVTDAEIAAYYQANEAEFREPEKLSVDYIELSV 241 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--EAFQSLKKGKKFI 297 + + + +++++YE+ E + + TV ++ A E L G +F Sbjct: 242 NSIAATVTVDEADVRSQYEQEAESFDATPELTVAHILLEEDSSAKLTEVQAKLAAGDEFA 301 Query: 298 QLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+ LG P+ + + L + G+ + + G V Sbjct: 302 DVAKAYSDDAGSRDQGGELGVLVAGAFPE-AFESAARELGE-GEVSGPVKTDSGTHFIKV 359 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 SF+ K I +++ KA + ++L+E + ++ I Sbjct: 360 LKKDVPEVPSFESRKAAIERSLKVAKAEGIYLSEMEKLDELTFGAPDLSGAAKELGIEVK 419 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 G VA P F D + + L + V+ P Sbjct: 420 TTQPFQRN----TGLGVAGNPEVRNAAFGDEVLIDNRN-SQVIELAGNRALVVRKNTHSP 474 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + LEEV V K + + KA + E +K ++ + ++ G + Sbjct: 475 EHIKPLEEVKEQVVSKLTESKLNDLLEEKAETFIAE-AKSSEDLNALAESSGYAYAMFED 533 Query: 534 INRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++R D + + + FS P P+ +G VV V S + Sbjct: 534 VSRSDPVSDPATRNTV---FSMPLIEGETAFDASPVRDGGYQVVGVVKKSAGTADDMEPT 590 Query: 590 FISYLTQMMNKD----LLDSVIAYLKSQYSVTVH 619 ++ L ++++ + + + + + +H Sbjct: 591 QVAGLATQLSRENSRFEGSAFESEVVANADIKIH 624 >gi|58040710|ref|YP_192674.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H] gi|58003124|gb|AAW62018.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H] Length = 645 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 113/634 (17%), Positives = 253/634 (39%), Gaps = 22/634 (3%) Query: 1 MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFSSFI 57 M+ +R +W + +++F+ F+ WG+ D ++ S+ VV VG + + F Sbjct: 1 MITTLRHLFVDSWAGRAAALLIFLAFIGWGVGDVYSNMGTASSNEVVRVGDRSITPDDFS 60 Query: 58 NSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + +L ++++IG S+ + + ++ L NLV G+ V Sbjct: 61 RALSAQLPEVARRIGLADPSKLPKGEVEQIARQTLQNLVIQNETQLAAARAGMMVPDDLV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ P FH +F VF RL R G++E + + + ++ ++ + Sbjct: 121 RQEVFAIPAFHNAAGQFDRSVFNDRLTRIGLSEGKLLQAIREDIASRGLLQGMGQSVVAP 180 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L D+ F R D + + A P++ L ++++ + +R EY+ + Sbjct: 181 SSLTDRMLSFDASQRIFDLVQIPFASGVVAAAPTDDQLHRFYDNHPQMFRTTEYRHAKMV 240 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + K IE+ +D L Y+ + PE RT++ L F +Q +AD A + K G Sbjct: 241 VMTSDSVAKTIEVPDDVLHRLYDFQARTFDMPETRTIQVLTFTDQAKADAAATAWKSGTS 300 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + ++ ++ + +SL S + IP+ LA + F+ + G+V+ +++ Sbjct: 301 WDDIQKKFPEAAA-VSLPSVRQSDIPNPELAKAAFAAPSD-RISGPEKTGMGWVVFNITA 358 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I +F++ K + Q++ +A E ++ K+ ++ +A +++++I V Sbjct: 359 ITAPHKTTFEQAKDGLKTQVQTQEAGEALQARQKQFQDAVAGSSTLEQIPSDLGAVPAS- 417 Query: 416 PLVDFAGKDVKG--KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 +D G G + Q + ++ + P+G+ + + E P Sbjct: 418 GTLDSNGLTQDGLPAPIPGDAALRQAIIHQIFTQSKGAQPTVINGPNGTAFSLLVDEVHP 477 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + + V V + W + +A L +K G + + AS L + Sbjct: 478 GTLKPFDSVRDQVVQAWTADQKRHAADMRATAL-FNAAKAGTLRKAVEGQAEASALRQDV 536 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 + ++ + + VF F + ++ + VT K ++ + Sbjct: 537 AVSRVHPDQSLPQNVLRGVFGLKPGTSGMFESPD--AFWLVNVTADKPASAEDMKSLGNQ 594 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 L+ D + ++S V ++ +++ + Sbjct: 595 LS--------DEYLQSMRSDIPVALN-AAMEKAV 619 >gi|254507758|ref|ZP_05119889.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16] gi|219549283|gb|EED26277.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16] Length = 364 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 154/354 (43%), Gaps = 12/354 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + +G +T VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAG-NTAAKVGNVEIDRGEFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ + K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAASLGLRVSDAQVRT 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D KF +++ S L R G + + ++ + L R ++ Sbjct: 120 MIVEMPQFQ-VDGKFDQEIYQSSLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLPA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + + R V + L A + S+ + ++E+ + Y PE +++YI Sbjct: 179 EVEAQAKLLTQTREVQTLSLPLDDFAAKVELSDDEIQGYYEQNSERYTRPEQVKVAYIEL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295 + + I +S+++ + +E++ +KY S E R V ++ +Q +A L G Sbjct: 239 SAQKLKDAITVSDEDAKKYFEEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGTD 298 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F LAEE+ SLG ++ + D + ++ F+L GD T ++ Sbjct: 299 FAALAEEKSDDFGSASEGGSLGWIERD-VMDPAFEEAAFALKNVGDVTGLVKSD 351 >gi|323143442|ref|ZP_08078125.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066] gi|322416727|gb|EFY07378.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066] Length = 642 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 113/647 (17%), Positives = 242/647 (37%), Gaps = 40/647 (6%) Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 ML + +R+ ++ + KI ++ + F+ G+ L + V VG K+ + + Sbjct: 1 MLTDKLREGAQGRIFKILFWIIILSFIFTGVGGYLIPRLNTDPV-EVGEYKITANEWNQQ 59 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + + + G + L +IL+ ++ + + D+ + +V Sbjct: 60 YTSQTQQMQRMYGARYADMLEDPQYVSNLRSQILEGMIDNVAFNSAVYDLNVRIGDEQVR 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPS 175 I +P F KD KF +D++++ + G+N + + + T V + P Sbjct: 120 ELIRTTPAFQ-KDGKFDNDLYLAVIRNMGMNPEYFGEQMRISAMATSVSDPILRTASYPL 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + + R++D LN + A + +++ + D + AP + +YI Sbjct: 179 PYEISALENLLTQTRTIDLYELNLDALRAGFSADDNEAKAYYDAHHDAFMAPANVKFNYI 238 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSL---- 290 L V E +K I ++DEL+ +++ + PE R ++ + +A++ +S+ Sbjct: 239 LLTVDELKKGINPTDDELEEYLTLHQDDFKVPEHRGFSHIIVRSDNPDAEKIVKSIDDGF 298 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F LA+E LS +G + + AD +F+L G T I + Sbjct: 299 AAGKSFADLAKEYSDDLSTKDIGGDMGEIIRASLA-PIFADKLFALETIGSHTDKIVDAD 357 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405 G +++I E+K + N KA E E L + S+D + Sbjct: 358 GTHYLQLNSIVKEHIPQLNEIKDQVKNACIDAKARELFNERVTTLSDMSFENPDSLDVTA 417 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALPDGS 462 + D +V V P ++ ++ +S V + D + Sbjct: 418 DALGVTVADSGVVALGATKV------PWPLNTSMVQNAAFSEENISSGVNSSVVNIGDDA 471 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + + + ES + + +EV + K +E + N D Sbjct: 472 ALVLNVYESHESMLKPFDEVKAEAVNAVINDKANKEADACLNTFAKAV------INDSNT 525 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTN 578 + A ++ + + + G+ +F+ P E + I N ++ +V N Sbjct: 526 EIPAHVVHRSAVTLNRSSADVEPAFGM-ALFAIPQEGQNRYIIASNKGNPTLAILKEVGN 584 Query: 579 SKVGPVQEKDKFI--SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + I S L Q + +L +++ + +T +++ I Sbjct: 585 AATTNENAELNQILRSQLVQANSLELRNALYKGARELTEITYNEDAI 631 >gi|255318960|ref|ZP_05360185.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SK82] gi|262378304|ref|ZP_06071461.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SH164] gi|255303977|gb|EET83169.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SK82] gi|262299589|gb|EEY87501.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SH164] Length = 623 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 101/637 (15%), Positives = 230/637 (36%), Gaps = 35/637 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E RK + W+ + L++ P G+ + + +V Q++ + K Sbjct: 1 MESFRKVIKGWLGIVLLILFLTPLAFVGIEGYFSGGNKENVAATVNGQEISKKELESLTK 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + + LD+L++ + Q E +G+ ++ +A+ Sbjct: 61 SYKEQYLNFVNG--DETLLNQPFIQQTALDHLIAQNLILQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ +FS ++ + L G+ + I + + + + FV S + ++Q Sbjct: 119 QPSFQ-QNGQFSQTLYENYLRSVGLTSQGLIANLRQDHALKMLNSTFVDYTLVSKVDMNQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + S + +++K+K++++ + + YI+ + Sbjct: 178 IANLQTEQRTLFLSSIPLDEYKKNIQVSQQDIANYYQKHKNSFKQTAHVDVDYIVLSPEQ 237 Query: 242 KE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLK 291 K +++ ELQ Y E R V+ ++ QK A+E + ++ Sbjct: 238 VNTKAAPVTDAELQQAYANFVEAQNKNAKREVKHILIATSDTRNENQAQKLANEVYAKIQ 297 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F Q A + + + G + Y + + ++ L K + + +GY Sbjct: 298 GGTNFAQAAAQYSDDIDSKTKGGLIESYQTGVYSEAFDKAVLGL-KANQISQPVKTQYGY 356 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + SF+ K +A +++ +K + + L E + S+D + + Sbjct: 357 HIIQ-AQTLAQNIPSFEAEKSRLAAEIQKSKVANLFTDTVNSLNEMVVSSDSLDVVPQEI 415 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K + V G + + V P + +F K+ + + L G +WV++ Sbjct: 416 K--GTRIETVKNVGLNTR-HPVLNDPSVKARIFNEDVKNGDRNVTSNLQLATGEAVWVKV 472 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 ++ P + L + +K K A ++K ++ E+ + + + + Sbjct: 473 RDYQPEGVQSLAQATPAIKTKIIDEKAAGLAAAKLKTMLDEFKTQ--PAQQVLAKHKVAF 530 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFK---VTNSK 580 + R ++ D FS V + N L V T S Sbjct: 531 QSAGTFTR----SQGLKRDVERAAFSVAAPKSGMWSVTTAALPNELVLVAVANVNKTTSN 586 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + Q+ + L+ YLKS+ + Sbjct: 587 ALTPEQLQELSKLYQQLRGQQELEDYTQYLKSKAKIK 623 >gi|262376134|ref|ZP_06069364.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145] gi|262308735|gb|EEY89868.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145] Length = 621 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 118/637 (18%), Positives = 230/637 (36%), Gaps = 37/637 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E RK + W+ K+ LV+ P + G+ FS S SV ++ + K Sbjct: 1 MEAFRKVIKGWLGKVLLVLFLTPLALVGIEGY-FSSGNSDAAKSVNGTEISQKELESLTK 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + +D+K +D LV+ L Q E++G+ ++ IA+ Sbjct: 60 SFKEQYLSYANG--DETLLNQSFIDQKAMDTLVARTLLLQQAEELGISLSDQQIEQMIAQ 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F +D KFS+ ++ + L G+ + I+ K + + F+ S + + Q Sbjct: 118 QPTFQ-QDGKFSNALYENYLKSIGMTNRALIESLRKDHALKMLSSTFLDYPLVSPVEMQQ 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R + +N ++A + ++EK+K ++ P + Y++ + Sbjct: 177 IADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDVDYVVLKPSD 236 Query: 242 KE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKK 292 + + + +++ ELQ Y V+ ++ +K A E +K Sbjct: 237 IQVQSLAVTDAELQEAYTAFVATQKQAVKPDVKHILITADSRSDAEAKKLATEIAAKIKA 296 Query: 293 GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F Q A + + S G +E + + ++ SL K G + + +GY Sbjct: 297 GTTFAQAAAQYSEDPESKSKGGALAVYEEGVFGTAFDQTVSSL-KSGQVSAPVKTDYGYH 355 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I V SF+ K ++ + K S + L + + S+D +++ K Sbjct: 356 IISVQ-TPDVAVPSFESQKARLSEEALAAKKSNAFSDTVNTLNDMVVGSDSLDVVTQEVK 414 Query: 410 IVSI-DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 V + V + +D V + + LF K+ + ++ L +G W+++ Sbjct: 415 GVQVQKAQGVTLSTRD----PVLSDANLKVKLFNNDVKNGDRNASTSIQLANGDVAWIKV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + A ++ L E VK K A +K + + E+ K G + Sbjct: 471 RNYHAAGEQTLAEAKPRVKAQLIEDKAAALAKAKIQKALDEF----KTKPAAAVAKGDLI 526 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVK---CFPIENGLSYVVFKVTNSKVGP-- 583 + D FS P + VV V+ K P Sbjct: 527 FEDAGV--YTRAEGLLKRDVQRAAFSLPTPKAGHWSVTTAKMPNELVVVAVSEVKKNPVD 584 Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +++ + + Q+ + D YLKSQ + Sbjct: 585 VLSAEQRSELVKLYQQLRGQQEFDDYTRYLKSQAKIK 621 >gi|149928383|ref|ZP_01916623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] gi|149822918|gb|EDM82164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] Length = 633 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 123/650 (18%), Positives = 256/650 (39%), Gaps = 46/650 (7%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 E IR + + + L+ + F ++GL + ++ + VG + F + Sbjct: 1 FEFIRNNQK-IMQFVLLLFIAPAFALFGLEGYNTVSADANALAIVGDYPISQEEFDQVKR 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + G + + S +++++LD LV L Q ++ L A + +IAR Sbjct: 60 ERIEEARAQSGENFDPKVFESPEINRQLLDTLVLQYLLQQSVQKQYLTASDKALAEDIAR 119 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +PLF D KF + + LA G+ ++ + L+R V+ + L Q Sbjct: 120 TPLFQ-VDGKFDLETYKRELAARGLTPTQHEANVRFGLARNQVLDPVLRASFFPETLKTQ 178 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 R V ++ A ++ + ++E K + AP+ + Y++ Sbjct: 179 LDDVQLAGRVVRVKNIDLAPYLANVSITDEQVAAFYETNKAQFMAPQKADVEYVVLSPDT 238 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLK 291 + KIE+S+ ++ A YE+NK ++ +PE R ++ +KE A++ LK Sbjct: 239 IKSKIEVSDADIAAYYEQNKARFSTPEERRARHILLDAEKEGASADDLKAAAEKVLAELK 298 Query: 292 KGKK-FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F +LA+ + G + LG F K + ++FS KKG+ + ++ F Sbjct: 299 ANPSKFAELAKQYSIDPGSANQGGDLGFFGKGAMV-PEFEQAVFS-QKKGELSGLVKSQF 356 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I V+ I+ + ++VK IA++++ K + + + R E + G S + + Sbjct: 357 GYHIVEVTEIRGGEVQALEDVKTQIADEIKNQKMTAQFADAQGRFTELVYEGGQSFENVV 416 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + + + F G + +++ +F D +K++T A+ G M Sbjct: 417 KALGVQAQT-----FNGLTQGAANAPEVLKDAKVIAEIFSSDSIENKNNTKAVQVGETMV 471 Query: 466 -VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL----EYSKEGKN-FRD 519 +I A R LEE+ ++ K + A+ A+ L E + G + Sbjct: 472 SARIVNYTAAAARPLEEMKPVIQARLKQEEAAKAALKDADALAAKLDSEKPQAGSDLLTG 531 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + S L+ + + ++ G+S++ V + Y V V +S Sbjct: 532 FADSKTVSALSAEGLPGLVAQSVL--NTGVSELPKAKVIGLGN------NGYAVAWVESS 583 Query: 580 KVGP---VQEKDKFISYLTQMMNKDLLDSVI----AYLKSQYSVTVHDNL 622 + + + Y + + ++++ +K + V + Sbjct: 584 APSSEVKAKADPQVVQYYENIAGQVYQEALLLAARDAMKKRVEVEIKKTF 633 >gi|294011597|ref|YP_003545057.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S] gi|292674927|dbj|BAI96445.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S] Length = 649 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 127/643 (19%), Positives = 252/643 (39%), Gaps = 18/643 (2%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFS 54 ML + R+ R+ + A IFL ++ F++ ++ F + G T G ++ + Sbjct: 1 MLSVFRRFIRSKLGAFAALIFLGIIAAAFIMGDITSGNFGSSMGGGETAARAGGSRLTMT 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + ++ + + + G ++ D LV+ TL ++ D + Sbjct: 61 ELQDRVQRVFENARRSNPGLQIGDFLAQGGA-AQVYDQLVASMTLKEYASDQKVHISKRL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V +IA+ P F FS + F L RE I E+ D ++ + ++ G++ Sbjct: 120 VDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDISREILERQMLAPLGLGVKL 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ ++ E R V+ IADP++A L ++ K Y PE +RI Y Sbjct: 180 TDSMVLPYASLLLEARQGTIAVIPATAFKDIADPTDAQLDDFYRKNAARYTIPEQRRIRY 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + D + + ++ E+ + Y +NK Y + E R+ EQL+ P Q A +K GK Sbjct: 240 AVIDAERFAQAAQPTDAEIASYYNQNKAAYAAKESRSFEQLILPTQAAAKAIADQVKGGK 299 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+ G S+S++ S + + AK+G+ + GS G+V+ V+ Sbjct: 300 SLAAAAQSAGLSVSELKDQSREALASAASAAVANAGFAAKQGELAGPLRGSLGWVLLRVT 359 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 ++ + + V+ +I +R K + + ++E+ +A G S DE+ + + Sbjct: 360 AVRTTPARALAAVRDEIVAALRAQKEKRLLNDFTGKIEDQIANGGSFDEVVKDNGLKLET 419 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 P + +GK V+ + LL VFG + + Y + A Sbjct: 420 TPFLVSSGKQVEDAAYQVPADVKPLLAPVFGMSQDDDAQLVPIVAEKRYALAAPGDIQAA 479 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 L +V V +K + E+ + A Q+ + +K G + + G +L + Sbjct: 480 APPPLAKVKPLVAMQYKLAQGNEKAKALAEQIRAKVAK-GMKLDEAVASAGIALPRPQVV 538 Query: 535 NRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 + + ++ +F+ VK P Y V ++ K G + Sbjct: 539 GGRRADIMRDGQRPPAEVAMLFTMATNSVKTLPAGQDRGYFVVQLNGIKRGDAGSDKALV 598 Query: 592 ----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL---IQRYL 627 L++++ ++ ++ + V N +QR L Sbjct: 599 NQVRDQLSEVVGQEYGQQFERAVEKELGVKRSPNAVASVQRAL 641 >gi|299770348|ref|YP_003732374.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. DR1] gi|298700436|gb|ADI91001.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase) [Acinetobacter sp. DR1] Length = 621 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 107/631 (16%), Positives = 220/631 (34%), Gaps = 25/631 (3%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFSDYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQSSVDVDYVVVSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293 K + ELQ Y K E RTV+ ++ QK A E + ++ G Sbjct: 238 MAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + S + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + S SF+ K + ++ K + + L E + S++ + + K Sbjct: 357 IE-AETQASQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLEAVVQEVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ + P + LF K+ + + L +G +WV++++ Sbjct: 416 TKVE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + + K K + V +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEFKTQ--PADQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-EMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586 +R + S P V + N L V NS P + Sbjct: 531 AGVFSRSQGLKREIERAAFSATTPKPGMWSVTTANLPNELVVVAVSNVNSSAANAIPADQ 590 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + Q + +L+ YLKS + Sbjct: 591 LQQLKQLYRQSRGQQILEDYSQYLKSHAKIK 621 >gi|213582060|ref|ZP_03363886.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 405 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 86/414 (20%), Positives = 188/414 (45%), Gaps = 16/414 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F Sbjct: 239 DAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E+ + + +G + L ++ L +KG + VI S G+++A + Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--GLKEKGQISGVIKSSVGFLVARL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 +I+P+ EV+ DIA +++ KA + +++ + A + ++ Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSD--AASNDNESLAGA 405 Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 9/148 (6%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 ++R + K ++D K + + L G +++ S D+ G +E A Sbjct: 267 ERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKE---KSTDIISARNGGDMGWLEESAT 323 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P + + G+ + K ++ ++ + PA+ + L EV D+ K Sbjct: 324 VPELKNAGLKEKGQISGVIKSSV------GFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 377 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDI 520 K + + ++ S + ++ Sbjct: 378 EKALDAYYALQQKVSDAASNDNESLAGA 405 >gi|239994001|ref|ZP_04714525.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii ATCC 27126] Length = 528 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 93/538 (17%), Positives = 200/538 (37%), Gaps = 26/538 (4%) Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q D+GL ++ I + P F +F ++ F + L + G ++ D+ ++ Sbjct: 1 QQATDMGLRVSDKQIRETITQMPEFQF-GGQFDNERFQAILRQNGFQVADFRDYLRVQMT 59 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 + + + + QA + R Y+++++ + ++A + ++ Sbjct: 60 QNQLAAALTNSSFALDGEVQQANALQRQTRDAKYVLVSSDEFAGSIEVTDADVEAFYNNN 119 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-- 278 ++ E +++Y+ V + + ++ + + ++ YE N Y E R V ++ Sbjct: 120 IASFDTDEQVKLAYVKLSVDDLKDRVSVDEEAVRTYYENNLGSYGKEEERRVSHILIEAG 179 Query: 279 -----NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIF 330 + +A+ L G F LAE G F + D + ++ F Sbjct: 180 DDADAAKAKAESLKAELDNGADFAALAEADSDDTFSAENGGDLDFITPEMMDPAFDEAAF 239 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L GD + V+ FG+ I ++++K + SF EV +I + + A EK E Sbjct: 240 ALQNVGDVSDVVETEFGFHIIKLTDLKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNT 299 Query: 391 LEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 L E ++++ + + + + + P + F D+ Sbjct: 300 LAEIAFEVPDTLEDAANAVDLPVQESVVFSRNTAPAD----LSFPGLLDVAFSSELIDEG 355 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 L+ D + L D + + ++ E P R + LEEV ++ K K+ E + A + + Sbjct: 356 LNSD-IIELDDETVVVARVIEHQPQRTQSLEEVREGIEASVKAEKSKEAAEAWAFDI-AQ 413 Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569 + G++ S T + R + +FS +E + + Sbjct: 414 KVRAGESVESELAEKSVSWETAAAVPRA---GGTLARALVDTLFSLALEGEDKVDVATTV 470 Query: 570 S--YVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + V + N P E + L Q+ + + I L++ VT+ L Sbjct: 471 NGDVAVVMLENVNAAPELENELGESLKQRLAQVQGQRVYQQYIDALRANAEVTISQTL 528 >gi|209542341|ref|YP_002274570.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] gi|209530018|gb|ACI49955.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] Length = 643 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 125/639 (19%), Positives = 263/639 (41%), Gaps = 22/639 (3%) Query: 1 MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57 M+ +R A +W+ +I +LF+ F+ WG+ D L ++ + V VG Q + SF+ Sbjct: 1 MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60 Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ + EL +++++G S+ A +++L LV+ + + +G+ + Sbjct: 61 SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ +F G D +F +F SRL + G+ E +D L+ +V G R Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +++ +A F + R++D + + P A L ++++ + +R PE++ + Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGD-QGTPAPDTATLRRFYDNHPWLFRLPEFRHARIV 239 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + I+I + EL+ Y+ + KY PE R+V+ + P+Q A + G Sbjct: 240 VLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAGAD 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + ++ + K + + + + + IP LA +F+ A + G+V+ V+ Sbjct: 300 WAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRVTQ 357 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + P F ++++ +QM T+A++ V ++L++ +A G +D I V+I Sbjct: 358 VTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIAGGG-LDRIPDNLGAVAI-A 415 Query: 416 PLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 +D G+ G+ + + ++ R+F + + V PD ++ V + Sbjct: 416 GTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQAKGAN-PTLVQGPDNAWFAVAVDSVE 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P + R + V + W+ + +A L L G G +L Sbjct: 475 PGQLRPFDAVPDQGRSAWEDESRRHTANVQATALYLAAKAHGGVAAAAGPGQ--QVLHPA 532 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKD 588 + R + VF + ++ + V +T + D Sbjct: 533 PLGRGQQIEGV-PDELARLVFRLGAAG-QTVMLDEPDGFYVATLTAITHPDPATQPMQVD 590 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + L+Q + D+ S A L+ + +Q L Sbjct: 591 RIRTGLSQAIANDIGLSYAATLQQAVKPKTNMGALQSAL 629 >gi|103486661|ref|YP_616222.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256] gi|98976738|gb|ABF52889.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256] Length = 673 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 113/639 (17%), Positives = 234/639 (36%), Gaps = 16/639 (2%) Query: 1 MLEIIRKASRTWVAKI----FLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSS 55 M+ IR + + K F+V++ V F + + ++ F G + V VG +++ Sbjct: 26 MITAIRAMFSSTIGKFLALAFVVLVGVAFALSDVTGNSTFGGIGGANVAKVGGEEIGVGE 85 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + +Q + + + + GLD ++L L+ G DQ+ ++G + Sbjct: 86 LRDRVRQAYDQARRNQPGLTMAAFVENGGLD-QVLGQLIDGLAFDQYATELGFGVSKRLI 144 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 G IA P F G KF VF + L + GI+E + + + + R + Sbjct: 145 DGRIADLPAFAGVSGKFDQTVFENFLRQNGISEAQLRRDLRQQILLEQLAAPIAQMPRIA 204 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + E R + DP +A L ++ + + PE + I Y Sbjct: 205 PALAEPYAALLLEQRRGQATFIPASAFAPKGDPGDAALRRFLTQNAAKFTVPERRVIQYA 264 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 +FD +++ E+ Y+ N +Y + E R Q++ P+Q A+ ++ G Sbjct: 265 MFDRASVPVPA-VTDAEIARVYKDNAAQYAATETRRFAQVILPDQAAANRLAAKVRSGAS 323 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A E G S S S + AK+G+ + G+ + V + Sbjct: 324 LASAAAEAGLSASTTGDLGQSAYAATTSAAVARAAFAAKRGEVVGPLQTGLGWTVVRVED 383 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + S + +I ++ KA+E + + Y +++ + G S++EI+ K+ ++ Sbjct: 384 VTTRPARSLADASAEIRAELASNKANEAIVDYYNAIQDAVNSGASIEEIATDRKLQIVET 443 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 P + G+ L+ + F + + + +K I A Sbjct: 444 PAILPNGRAPGQPGFTLAADLAPLVAQAFQVGGEGEGQIATIVENEKFAVFAVKSIIAAA 503 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 ++ ++ +W+ + + KA + + GK+ + G ++ I Sbjct: 504 PPPFAQIRGELLSEWRFAEGQKVARDKARAI-ARAVEGGKSLNEAVAAAGPNIGNVQAIG 562 Query: 536 RMDNENKFFG---YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-----PVQEK 587 E G ++ +FS VK I ++V + + + Sbjct: 563 GRRAELGANGERVPPELALLFSMAEGSVKTLEIPGNRGWMVIALDEVRRPDPKAIEPERV 622 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L +LL+ + A + + VT++ L+ + Sbjct: 623 AAIARPLAPAFGNELLEQLAAEARRRVGVTINKGLVDQL 661 >gi|58698918|ref|ZP_00373781.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534569|gb|EAL58705.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 578 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 121/594 (20%), Positives = 259/594 (43%), Gaps = 30/594 (5%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + K+ +V+L + G+ + L V VG++ + + + ++ I Sbjct: 2 NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S G + E+ + + D +L+ L+ L ++GL + I + F Sbjct: 62 S---GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184 +F + F L + EKEYI K+L + P + +Q Sbjct: 117 DKGEFDKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYN 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 ++ R VD + + V I +P + L +E+ K ++ PEY+ YI + E Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFED 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 +I+IS++E+ E+ + + + R + ++F ++EA+ A ++ ++GK F Q+ EE Sbjct: 237 QIKISDEEVDGIIEQQELR----DQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVEEF 292 Query: 304 GKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 293 GKAELEETRVNNITKDFLPE-DMREKVFAL-KVGEVSEVLASSFGWHIIKVESAHQISDE 350 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 ++KKDI + + K+ E+V + ++ + G++++EI + + VD +G Sbjct: 351 DLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDASG 410 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 KD G V L+ +F ++ K + + D + + V+I + +P + + EE Sbjct: 411 KDQSGNNVGD---SSDLISFIFSREKD-QKGYFKGVGD-AVVSVKIIDIVPPKSQSFEEG 465 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 + W++ E + + ++ ++ D K G L+ Q++R + + Sbjct: 466 RASAVELWQSEFIKERMFKIGQEFAVQLREK----TDWEKIQGVELVEDQQMHRNE---Q 518 Query: 543 FFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + + + ++F+ PI+ N + V K +S G + D + Sbjct: 519 NYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVM 572 >gi|88798823|ref|ZP_01114406.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp. MED297] gi|88778586|gb|EAR09778.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp. MED297] Length = 610 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 109/631 (17%), Positives = 247/631 (39%), Gaps = 32/631 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R ++R K+ + ++ + F ++G + S++G+S +V + + + Sbjct: 1 MLDALRNSARGTAGKVIVGLIVITFTLFGAESII-SIAGNSAPATVNGEDISEVEYQRLL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++ + G ++ S + +I+++L+S Q + + +A +V A Sbjct: 60 SRRQQELTSQFGAEAAAQLMNSSFVTDEIIESLISQELQMQLADKLAFDASEDQVVQSFA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D +FS D +++ LA G N + ++ + + +D Sbjct: 120 DIPAFQ-IDGEFSQDRYLNVLAANGFNHQSFVAAQKEQAALAQFQSGVANSAFVVEKAID 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + RS Y +++ A + S+ L ++E+ ++ + + E ++ Y+ + Sbjct: 179 RYANLIAQERSFQYKAFESQNYLAQVEVSDGELRDYYEQNQEQFLSEESVKVRYLTISLD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----QKEADEAFQSLKKGKKF 296 ++ ++ E+Q+EY+ +R + ++F + Q EA A L +G++F Sbjct: 239 SLAEQQSVTEQEIQSEYDSYVASLNEDNVREISHILFADGDDNQAEAQAALTRLNQGEEF 298 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E G E IPDV D+ L++ G + + +G + + Sbjct: 299 ADLASELSDDPGSAEFGGSLGELIPDVYVDEFYDAALELSEVGQVSAPVETQYGVHLIRL 358 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + S EV+ ++ +R KA E++ +L + +++E++ + I Sbjct: 359 DALNASDPEPLSEVRDELVADIRERKAQEELLLVESQLSDAAFSTDTIEEVAELFQTEVI 418 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + + D A+ EQ +D + V L + S + +Q + P Sbjct: 419 SSDWITRSAADTPFDNPEAL---EQAFSAQVIEDGLI--SSVVRLENSSLLALQKEAYAP 473 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 E V+ +V+ K E + S+ ++ +G T + Sbjct: 474 EDVESFEAVVEEVRTILTAEKAEELMHSEMASVIETQQIQGDG-----------WETADA 522 Query: 534 INRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I R ++E +S+ F P +V + ++YVV + + P E+ + Sbjct: 523 ITRNNSE---LPSAVVSKAFELPQPIDGLVLGETSGDSVAYVVALTSVTNAAPDTEQREM 579 Query: 591 ISYL-TQMMNKDLLDSVIAYLKSQYSVTVHD 620 + L + + +++ +TV Sbjct: 580 ATALVENRIGGSQYQIIYNQARNKADITVRR 610 >gi|301594637|ref|ZP_07239645.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB059] Length = 606 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 106/620 (17%), Positives = 214/620 (34%), Gaps = 33/620 (5%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 LV+ P + G+ + + +V Q + ++ + + Sbjct: 1 LLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKG--D 58 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + K LD LVS L Q E +G+ ++ +A+ P ++ +FS + Sbjct: 59 ESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKL 117 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + + L G+ + I + + + F S + L Q E R++ Sbjct: 118 YENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLAS 177 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + A SN T ++ K+++ ++ P + Y++ K ++ EL+ Sbjct: 178 IKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQA 237 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLS 308 Y K E R V+ ++ D A Q L K G F Q A + + + Sbjct: 238 YAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPT 297 Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + G + Y P V + ++ SL K G + + +GY I + + + SF+ Sbjct: 298 SKTKGGLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFE 355 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 K + ++ K + + L E + S+D + ++ K I+ Sbjct: 356 AEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIE---SLNGVTLA 412 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 + P + LF K+ + + L +G +WV++++ A + L + + + Sbjct: 413 TQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNE 472 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 VK K + +K ++ E+ + + + + R ++ Sbjct: 473 VKAKVIDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFESAGVFTR----SQGLK 526 Query: 546 YDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597 FS P V + N L V NS P + + Q Sbjct: 527 RAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQS 586 Query: 598 MNKDLLDSVIAYLKSQYSVT 617 + +L+ YLKS + Sbjct: 587 RGQQILEDYSEYLKSHAKIK 606 >gi|162147717|ref|YP_001602178.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] gi|161786294|emb|CAP55876.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter diazotrophicus PAl 5] Length = 643 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 125/639 (19%), Positives = 263/639 (41%), Gaps = 22/639 (3%) Query: 1 MLEIIRKA-SRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFI 57 M+ +R A +W+ +I +LF+ F+ WG+ D L ++ + V VG Q + SF+ Sbjct: 1 MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60 Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ + EL +++++G S+ A +++L LV+ + + +G+ + Sbjct: 61 SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ +F G D +F +F SRL + G+ E +D L+ +V G R Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +++ +A F + R++D + + P A L ++++ + +R PE++ + Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGD-QGTPAPDTATLRRFYDNHPWLFRLPEFRHARIV 239 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + I+I + EL+ Y+ + KY PE R+V+ + P+Q A + G Sbjct: 240 VLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAGAD 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + ++ + K + + + + + IP LA +F+ A + G+V+ V+ Sbjct: 300 WAKI-QSGAKDSAAVGMDNVRESAIPSPGLAKLVFA-APASVLQGPVQTDTGWVVFRVTQ 357 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + P F ++++ +QM T+A++ V ++L++ +A G +D I V+I Sbjct: 358 VTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIAGGG-LDRIPDNLGAVAI-A 415 Query: 416 PLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 +D G+ G+ + + ++ R+F + + V PD ++ V + Sbjct: 416 GTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQAKGAN-PTLVQGPDNAWFAVAVDSVE 474 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 P + R + V + W+ + +A L L G G +L Sbjct: 475 PGQLRPFDAVPDQGRGAWEDESRRHTANVQATALYLAAKAHGGVAAAAGPGQ--QVLHPA 532 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKD 588 + R + VF + ++ + V +T + D Sbjct: 533 PLGRGQQIEGV-PDELARLVFRLGAAG-QTVMLDEPDGFYVATLTAITHPDPATQPMQVD 590 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + L+Q + D+ S A L+ + +Q L Sbjct: 591 RIRTGLSQAIANDIGLSYAATLQQAVKPKTNMGALQSAL 629 >gi|90416122|ref|ZP_01224055.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium HTCC2207] gi|90332496|gb|EAS47693.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium HTCC2207] Length = 618 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 113/627 (18%), Positives = 231/627 (36%), Gaps = 22/627 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ R + +A ++++ + F G+ S SG+ T V V +KV S + + Sbjct: 1 MLDSFRHNMKG-IAFGIVILIAIVFAFSGIGSLSMSGSGADTAVIVNGEKVTELSVLRAI 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E I + +++ + ++++ L+ L Q + G+ + Sbjct: 60 SSEKRRILNE-NEGLDASLLEDELIRPQVVEQLIGRRLLSQAAKSGGMGISSRTTSKLLL 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P F +D +F D+++ + +G +++ L V FV + LD Sbjct: 119 GTPAFLSEDGRFDQDLYLYTIRAQGYTSGTFLEMLRDDLLIEQYVRGFVASGFVTASELD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + RS Y+ L + D S+ + ++E Y+APE I YI + Sbjct: 179 LIASITEQQRSYYYLTLPLQPAVDAVDLSDEQIATYYEDNNQRYQAPEQVIIDYIELNPE 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKKFIQ 298 ++ +++ A YE+ ++ S R ++ P+ E + L G+ F Sbjct: 239 LFSATQSVAEEQILARYEEQRDSLESTTSRQAAHILLAQPSDDVLAEINEKLAAGEAFEA 298 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E + + LG S + P+ S ++ +L + G+ +P + G + + Sbjct: 299 LAKEYSEDVGSADFGGDLGYTSGDTFPE-SFETALEAL-QVGEVSPPVSTDSGIHLIKLL 356 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +I+ V F + I ++ + E L+E ++ EI+ ++ + Sbjct: 357 DIQE-KIVDFDSERARIEQELVTELTDVWLVEKLANLKELSYNAENLAEIATDLELTAQI 415 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 AG G ++A P + F +D + D + L D Y+ +++ +SIPA Sbjct: 416 SEPFTRAG----GAGISANPAVYKAAFSSQVLEDSYASD-VLELGDDRYVVLKLNKSIPA 470 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R + L EV V ++++ +L+ G++ + K Sbjct: 471 RQKALSEVRGAVVASLTDQLARANLATRGAELLARVD-SGEDIETVAKAEDLEWQVVLDA 529 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDK 589 R Q+ + E + +VV +T+ + G +K Sbjct: 530 KRSTGGTNNEIKRFAFQLPATATEDLIESFYARSGDFVVLALTSVEAGDSSKLSEDQKAS 589 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSV 616 L +V L+ V Sbjct: 590 LSYAGVSSTGGRELQAVQKSLRDNADV 616 >gi|269102133|ref|ZP_06154830.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae subsp. damselae CIP 102761] gi|268162031|gb|EEZ40527.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae subsp. damselae CIP 102761] Length = 565 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 108/568 (19%), Positives = 224/568 (39%), Gaps = 29/568 (5%) Query: 67 ISQKIGFVVNSERA---RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + ++G ++ + +L+ +++ + + ++GL ++ I P Sbjct: 1 MQAQLGENFSNLLGNPQYVQQFRRSVLERMINDVLIQKRAHELGLRVSDQQIRDAIFAMP 60 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 F D KF+++ + L R GI +++ + L R +G G + +++ + Sbjct: 61 EFK-VDGKFNNEQYNQLLRRSGITPEQFAESLRTDLLRQQFLGAIEGSDFALSGEVNELR 119 Query: 184 RFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + R + + LN A+ + ++E+ + P ++SY+ + Sbjct: 120 MLESQERVIRTLTLNLADFTKKAEASITEEQEKAFYEQNPQQFTRPAQVKVSYVEITGDK 179 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKF 296 + IE+S+ QA Y ++K+K+ +PE R V ++ ++++A+ LK G F Sbjct: 180 LKDSIEVSDA--QAYYNEHKDKFSTPEKRQVSHILITGDSAASKEKAEAILAQLKDGANF 237 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA++ L F K + D + D+ F+LAK GD + V+ SFGY I Sbjct: 238 AELAKKDSDDKFSAKDGGKLEWFEKG-VMDPAFEDAAFALAKPGDLSGVVKSSFGYHIIL 296 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIV 411 + I+P+ F +VK +I ++ KA ++ +L E S+DE + K Sbjct: 297 LDGIEPAKAKPFADVKAEIIADIKSQKAGDEFYAMQTKLAETAFESPDSLDEAAEAVKA- 355 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + DF + V P Q L ++D ++ D + + + V++ ++ Sbjct: 356 --KVHATDFFSEQT-APGVLNNPKVLQALQSPEVREDGMNSD-AIEVGPEHVVVVRVDDA 411 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 ++V VK ++ KA++LV + ++GK+ + G S Sbjct: 412 RDETVLPFKDVEAKVKSLLAQRDGEQQAQKKADELVAQL-RDGKS--EQLTKEGYSFSGE 468 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGPVQEKDK 589 I R + + G +V KV + V + Sbjct: 469 QTITRSGPDYQVSQVAFRLAKPQAGKATYGVTRDAKGNVLIVQLDKVIDQDVAKEAADPQ 528 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 F + QM + + + I L+ ++ Sbjct: 529 FAQQVEQMNAQQDMATTIQTLRETADIS 556 >gi|293608199|ref|ZP_06690502.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828772|gb|EFF87134.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 621 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 103/635 (16%), Positives = 220/635 (34%), Gaps = 33/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSM 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293 K + ELQ Y K E RTV+ ++ QK A E + ++ G Sbjct: 238 MTKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + S + G + Y + + ++ SL K G + + +GY I Sbjct: 298 LSFAQAASQFSEDPSSKAKGGLVEAYASGVFSDAFDKTVLSL-KNGQVSQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S++ + + K Sbjct: 357 IE-AETQANQIPSFEAEKARLTAEVEKNKVATVYSDAVNSLNETIVGNDSLEAVVQEVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ + P + LF K+ + + L +G +WV++++ Sbjct: 416 AKVE---SLNGVTLATQNPYLSDPSVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + + K K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDAKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG--- 582 +R ++ + FS V + N L V NS Sbjct: 531 AGVFSR----SQGLKREIERAAFSLATPKPGMWSVTTANLPNELVVVAVSNVNSSAANAI 586 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + Q + +L+ YLKS + Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSQYLKSHAKIK 621 >gi|328953890|ref|YP_004371224.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca acetoxidans DSM 11109] gi|328454214|gb|AEB10043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca acetoxidans DSM 11109] Length = 629 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 109/640 (17%), Positives = 227/640 (35%), Gaps = 38/640 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + +W + + V F++WG+ F + V V K+ + ++ Sbjct: 1 MLDFMRKHASSWFVTGIIGAIVVVFVLWGIGS--FRSAQFQEVAEVDGAKIYLPEYYKAY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +++G N E A+++ L ++ L ++ + Q +GL + I Sbjct: 59 QNLVRNYQEQMGGESNEEVAKTLRLREQALGQMIDELLIKQASNRLGLNVTDAELRDYIR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 R+P F + F+ + LAR + EY + + L +V + S L Sbjct: 119 RNPAFADERG-FNEKRYHQLLARRRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQ 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 +A R E V+Y+VL A + Q++E + + +R PE ++ YI F + Sbjct: 178 EAYRLQQETVRVEYVVLGPSQFLKEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFKFN 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288 + + +I+ ++++ Y + E Y P+ V QL + A++ Q Sbjct: 238 DFDGQIKADREKIETYYYDHLEDYSRPQTIRVSQLFLEPPSKAGTAEQQRFRLLAEKLLQ 297 Query: 289 SLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + G+ F QL ++ LG + F L K G + Sbjct: 298 RARAGESFEQLQKKYSPEAEGRIQAGELGLVKRGQNI-PEWEAVAFHLKKGG--IGMAKT 354 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 GY + V++I T EV+ + R +A + + L + Sbjct: 355 PRGYYLIKVNDILERKTPPLAEVQAQVEKSWRAEEAKKLAHRQAEGLRAEMLN----ASF 410 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + I + + + P Q+ + P + L DG Sbjct: 411 AEAAAARHIKVQETGWLTSKDAIPGLGQQPAFSQMAIGL----KPQEISKPLNLADG-VA 465 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +Q+ + + L ++ V + + K A +++ + +L ++G++ + Sbjct: 466 LLQVMDHQDSLLPPLAQIKDRVAEAVRLEK-ARLAAAEEAESILSRLQKGESLAKVAAQK 524 Query: 525 GASLLTTNQINRMDN-ENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSK 580 G L + R + + + FS P V +VFK Sbjct: 525 GVPLKDSGFFTRSQGMPGQGQVRELATAAFSLAATPPHHVDLVSWGGENYLLVFKERRQP 584 Query: 581 VGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +++ L + + + +A + + + V Sbjct: 585 SREQFALAREELSKGLMDLKRQMVFSQWLASERQRAKIKV 624 >gi|332971823|gb|EGK10770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)] Length = 624 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 112/642 (17%), Positives = 240/642 (37%), Gaps = 34/642 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E IR ++W +IFL++ P +I GL + ++ V +VG Q + + + ++ Sbjct: 1 MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFTGSANANDVATVGDQTITRAEYQDAIN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + Q V + + L++++L L++ A L +G+ + + + Sbjct: 61 TRRNELLQ---NGVEASAINTNALNREVLKGLINRALLRNQSGQLGMHVSDKVINDLLLQ 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ +FS+D F L ++G+ + + D Y + L+ + ++ Sbjct: 118 DPQFLDENGQFSNDRFAFSLQQQGMTKDQLFDQYRQQLNLMQLYAGVAQTAIYPESEIND 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R V L S + ++ ++K++ + ++YI D + Sbjct: 178 LLALQLETRDVWVYRLPWEQYKDKVSVSAKEIENYYNEHKNDLNSVAMVDLAYIQLDPAK 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298 +++ E+QA+Y+ K Y + + Q++ ++ + + LK+G+ F Sbjct: 238 VAVD-KVTEKEIQAQYDAFKANYKGAANQKLSQILITGDKAEQTIQQIQKRLKQGESFAA 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-----SIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA++ + + G + PDV AD K + + SFGY + V Sbjct: 297 LAKQYSEDPISAAKGGDIGTFNPDVFGADGAKVAKAIEGLNKDQISAPVKTSFGYQLFKV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + S +++++ Q + K + + + R+ E G +++I+++E++ Sbjct: 357 TEMSGDSVPSLASMREELVAQAQRQKREQLIADKITRINEMAIDGVGIEDIAQQEELTVQ 416 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + G K P F F D + +WVQ P Sbjct: 417 KIKNYTKVG----NKTALGQPAVIDAAFDDFALQDESVSASIKV--NNGTIWVQPTNYRP 470 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L++ D+K K E+ + A + + +G + + A+ + Sbjct: 471 VKPLTLQQASADIKNILVKQKATEQALAAARNISKTVNDKG------MQAVQANFKSLGN 524 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 INR +N D + FS K + + + KD + Sbjct: 525 INR---KNPLLSTDEQAIAFSKDSTNGKQLAVSEKTKEGATVLVLGPISKGSMKDVPAAE 581 Query: 594 LTQMM-------NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 L+Q M ++ + YLK V ++ +I Sbjct: 582 LSQAMFDMRSIRGQEYFSDYLEYLKGATKVEENEKVINEVGG 623 >gi|148653423|ref|YP_001280516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. PRwf-1] gi|148572507|gb|ABQ94566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. PRwf-1] Length = 624 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 107/637 (16%), Positives = 232/637 (36%), Gaps = 34/637 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E IR ++W +IFL++ P +I GL S + V VG Q + + + + Sbjct: 1 MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFSGASSVNEVAKVGDQTISRAEYQDGLN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + Q V + + L+ ++L L++ A L + +G+ + + + Sbjct: 61 GRRNELLQ---GGVEASAINTQALNSEVLKGLINRALLRNQTDHLGMHVSDAAINNLLLQ 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P + ++ +FS+D F L ++GI + + Y + L+ + + Sbjct: 118 DPQYLDENGQFSNDRFAFALQQQGITKDQLFAQYRQQLNLMQLYASVAQTAVYPESQIHD 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R V L S+ ++ ++ + K + ++Y+ D + Sbjct: 178 LLALQLETRDVWVYRLPWEQFKDKVSVSDKEISDYYNENKSKLNSRAMVDLAYVSLDPSK 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298 + +++ ELQA+Y+ K ++ + V Q++ + + Q LKKG+ F Sbjct: 238 LPVE-KVTQAELQAQYDDYKARFVGNSKQKVSQILVTGSKAEATMQQIEQRLKKGESFAA 296 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-----SIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A+E + + G + D AD S +KG+ + + SFGY + V Sbjct: 297 IAKELSEDPVSAAKGGDIGTFNADAFGADGQKVAQALSGLEKGEVSAPVKTSFGYQLFKV 356 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++ S + ++ ++ Q + K + + + + + G +++I+++E + Sbjct: 357 TDKSGDSVPSLESMRDELTAQAQRQKREQLIADKITSINDMATDGVGIEDIAQQEGLTVH 416 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + + + P + F F + + +WVQ P Sbjct: 417 KIKNYTKLNNNTE----LNQPVVIEAAFDDFALQE--ESVSPGIKVNTGTVWVQPTNYRP 470 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L + +K K A++ ++A +L + G + Sbjct: 471 IKPLTLAQASAQIKSTLVKQKAAQQAMAQAKRLSETVNNSGMS------AAKVPFKALGT 524 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 INR N D + FS K + S + + KD + Sbjct: 525 INRQ---NPQLSMDEKAIAFSKTTPAGKQVAVAEKTSSGATVLVMGSISKASIKDVPAAE 581 Query: 594 LTQMM-------NKDLLDSVIAYLKSQYSVTVHDNLI 623 L+Q M ++ + YL+ + ++ +I Sbjct: 582 LSQAMFDMRSIRGQEHFSDYLEYLRGATKIEKNEAVI 618 >gi|307293346|ref|ZP_07573192.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum L-1] gi|306881412|gb|EFN12628.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum L-1] Length = 649 Score = 321 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 129/643 (20%), Positives = 248/643 (38%), Gaps = 18/643 (2%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFS 54 ML + R+ R+ + A IFL ++ F++ ++ F + TV G K+ + Sbjct: 1 MLSVFRRFIRSKFGAFTALIFLAIIAAAFIMGDITSGKFGSSIGSGETVAKAGGSKLTMA 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 F + ++ + + + G ++ D LV+ TL ++ D + Sbjct: 61 EFQDRVQRVFENARRSNPGLQIGDFLAQGG-GAQVYDQLVASMTLKEYAGDQKVHISKRL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V +IA+ P F FS + F L RE I E+ D + + ++ G++ Sbjct: 120 VDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDIGREILERQMLAPLGLGVKL 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 S+ ++ E R V+ IA+P++A L +++K Y PE +RI Y Sbjct: 180 SDSMVLPYASLLLEARQGTIAVIPASAFKDIAEPTDAQLGDFYKKNAARYTIPEQRRIRY 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + DV + + ++ E+ Y +NK Y + E R EQL+ P + A +K GK Sbjct: 240 AVIDVERFAQAAQPTDAEIATYYNQNKAAYAARESRDFEQLILPTEAGAKAIADQVKGGK 299 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A++ G ++S++ S + + AK+G+ + GS G+ + V+ Sbjct: 300 SLAAAAQDAGLAVSELKDQSRQGLAATASAAIANAGFAAKQGELVGPLRGSLGWALLRVT 359 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +K + + VK +I +R K + + ++E+ +A G S +E+ + + Sbjct: 360 AVKSTPARTLDAVKGEIVATLRTQKEKRLLNDFTGKIEDQVANGGSFEEVVKDNGLKLET 419 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 P + +GK V+ + LL VF D Y + A Sbjct: 420 TPFLISSGKQVEDAAYQLPADVQPLLAPVFAMSQDDDAQLIPIAADKRYALAAPGDIQAA 479 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 L +V V +K + E+ + A Q+ + +K G D G +L + Sbjct: 480 APPPLAKVKALVAMQYKLAQGNEKAKALAEQIRAKVAK-GVKLDDAVAAAGIALPKPQVV 538 Query: 535 NRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 + + I+ +F+ VK P Y V ++ K G + Sbjct: 539 GGRRADILRDGQRPPAEIAMLFAMAPNSVKTLPAGQDRGYFVVQLNGIKRGDAGSDKALL 598 Query: 592 SYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNL---IQRYL 627 + + + ++ ++ + V + N +QR L Sbjct: 599 NQVRDQLSDVVGQEYGQQFERAVEKELGVKRNPNAVAGVQRAL 641 >gi|93006476|ref|YP_580913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter cryohalolentis K5] gi|92394154|gb|ABE75429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter cryohalolentis K5] Length = 624 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 107/640 (16%), Positives = 241/640 (37%), Gaps = 30/640 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R ++W +I L++ P + G+ + + VG + S + + Sbjct: 1 MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + V ++ L +++L L+ L+Q +G+ + + + Sbjct: 61 NRRTELLDQ---VDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQ 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +F G D +FS+D F S L + + + + D + LS + VG + Q Sbjct: 118 EEIFKGADGEFSNDQFASFLRQRNMTKNQLFDEFRNQLSLDQLNASIVGTAAYPMKAVSQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ N + + S + +++ KD ++ ++Y+ Sbjct: 178 LINLQLEARNIWLHRFNWQDYVSKVKLSKNDIQAYYDANKDTLKSAAMVDLAYLQLSPQT 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298 + E++ ++LQ +YE K+ + R + Q++ + AD+ L KG+ F + Sbjct: 238 IQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKIKARLAKGEAFAK 296 Query: 299 LAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +A+ + S + G + + D + + GD + + SFGY I V+ Sbjct: 297 VAKAESDDPSGETGGDIGRFNPSVFGNDAAAVEKALEGLSVGDISVPVKTSFGYQIFTVT 356 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + S + ++ D+ + + K E + + + A G S+++I+++E + Sbjct: 357 EDNGNKIPSLESMRDDLIAKAKEYKRQEIYADKVTAINDLAADGFSIEDIAQQENVSLKR 416 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SYMWVQIKESIP 473 L KD + + ++ + ++ + F + + T + G +WVQ P Sbjct: 417 L-------KDYRKENNKSVLAQPAVIKQAFDEFTIQDQAVTAGIEVGNGTVWVQPSNYRP 469 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L + + + K +E + A +L K DI K G + + Sbjct: 470 TKTLSLTAATPRITQLLRQQKASELALNDAKKLAAGI----KTTADINKQ-GVTFQALGE 524 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-----KVTNSKVGPVQEKD 588 INR + G++ P V + + V K ++ Sbjct: 525 INRQTTQLTEKER-GLAFSKQAPENGVVAVASKTEMGATVLVGDRIKTEQQSPLSAAQRA 583 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + + + + +D L + YL+ Y V ++ ++ Sbjct: 584 QTAAIIRDNLGQDQLQDYLDYLRLVYKVEINKANMENAQG 623 >gi|329889376|ref|ZP_08267719.1| rotamase family protein [Brevundimonas diminuta ATCC 11568] gi|328844677|gb|EGF94241.1| rotamase family protein [Brevundimonas diminuta ATCC 11568] Length = 643 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 114/635 (17%), Positives = 244/635 (38%), Gaps = 14/635 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ R +++ A ++ + FLI G +F+ G ++S G + V + F + Sbjct: 1 MITYFRNFAKSKWAAGLFALIILSFLIVGAQSDIFANLGPRHIISAGDRSVDSNQFRGDF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + ++ G V+ + L ++ LD+ + G+ V EI Sbjct: 61 ERVRANLQEQAGRPVSYDDMVKENLHQQYLDSQTQRLGFLDWAYKAGIRPGKELVLAEIR 120 Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + P F + +F D++ LA++ + + + V G++ + Sbjct: 121 KIPAFFNQITGQFDKDLYAQALAQQNLTSEMLEQDLRDQYVTSHVGSAVFAGLQAPRVYA 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E R + + P++A LT + ++ + R+PE++ IS +LF Sbjct: 181 ALLAGQALETRDGRWFSVTQDMAGRAGAPTDAQLTAFMKENEARLRSPEFRMISLVLFTP 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + ++ +++Q YE K PE RT L P ++ AD+ L+ GK ++ Sbjct: 241 GPNDPRPTVTEEQIQERYEFRKAALADPEKRTFVTLTVPTKEAADKIAADLRAGKAPAEV 300 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A+ L D + + + D ++ ++F LA + I G G+ +A ++ I+ Sbjct: 301 AKANNIQLGDYK--ATPQAAVGDPAVGAAVFGLA-VDQVSAPIQGRLGFTVAKLAAIQAG 357 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 V+ + + + +++ ++ E+ G ++ + + K I LP Sbjct: 358 QAVTLESARPALTQELQAEAVKAATYAKVEQFEKARQEGKNLADAATAAKARVIQLPPFT 417 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G+ G+ + A Q+L + D + DG Y V++ + P+ L Sbjct: 418 QQGQLPDGQPMNAP---RQVLESAYTLTKGGESD-VIDAGDGQYFAVRLDDIRPSALPTL 473 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +EV + + W + A +S+KA QL + G++ + GA L + + Sbjct: 474 DEVRAPLGQQWTLRENARLLSAKAEQLAGR-VRAGEDIAKVAAEAGAPLTVRTGVQQSRE 532 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599 G + +F V ++ ++VV +V + Sbjct: 533 SQAQVGDGVLRGLFGQSKGQVFS-DAQSQTAFVVGRVDAIHAANPALAAPLAEQARPRLT 591 Query: 600 KDLLDSV----IAYLKSQYSVTVHDNLIQRYLDGE 630 ++L +++ IA ++ L + L E Sbjct: 592 EELANTLADRTIAAAAARTKSRNDPALALQALGVE 626 >gi|319638362|ref|ZP_07993124.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102] gi|317400111|gb|EFV80770.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102] Length = 617 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 119/636 (18%), Positives = 237/636 (37%), Gaps = 55/636 (8%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 65 NAPS--------RDAVFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ + + +K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALSIKDLAEKQTVSAEEV 236 Query: 254 QAEYE-KNKEKYFSPEIRTVEQLVFPNQKEA---------DEAFQSLKKGKK-FIQLAEE 302 Q Y+ K+ + EI + V PN EA D+ LK F +LA + Sbjct: 237 QKAYDSKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDSFAELAAK 296 Query: 303 QGKSLS----DISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 K LS +LG SK + F+L K G+ + + S GY + V N+ Sbjct: 297 YSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVLNV 355 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSIDL 415 + + ++ K I +++ KA+ ++L E+ +S+ + + L Sbjct: 356 EAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAVANSGLKVESL 413 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKESIP 473 G + A +P E L+ F D K +A+ + + ++ KE Sbjct: 414 DE----WVTKAGAKEAGLP--EALINAAFSDDVLKKKHNSEVIAINNDTVWVIRAKEVRE 467 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + EV V+ + + + KA + + GK +Q Sbjct: 468 EKIAPFAEVKDTVRAAYLRSEAVKLAEKKAQETLAAL--------KAGKTADVQWSPVSQ 519 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF--- 590 ++ D + + + PV + + G+ V S P + Sbjct: 520 LSAQDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSAPENADSQIPAS 579 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L Q ++ ++ D+++ YL + T + Sbjct: 580 KQALVQQLSANVFDALLQYLDKKIDRTQGAQQVNNA 615 >gi|262278967|ref|ZP_06056752.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus RUH2202] gi|262259318|gb|EEY78051.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus RUH2202] Length = 621 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 105/631 (16%), Positives = 219/631 (34%), Gaps = 25/631 (3%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLISSLRQDHALKMLTSTFSDYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVVSPSL 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293 K + ELQ Y K E RTV+ ++ QK A E + ++ G Sbjct: 238 MAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + S + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSL-KNGQISQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S++ + + K Sbjct: 357 IE-AETQANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLEAVVQEVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ + P + LF K+ + + L +G +W+++++ Sbjct: 416 TKVE---SLNGVTLATQNPYLSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWIKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + + K K + V +K ++ E+ + + + Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEFKTQ--PADQVVAKNKVVFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV-EMVKCFPIENGLSYVVFKVTNSKVG---PVQE 586 +R + S P V + N L V NS P + Sbjct: 531 AGVFSRSQGLKREIERAAFSAATPKPGMWSVSTANLPNELVVVAVSNVNSSAVNAIPADQ 590 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + Q + +L+ YLKS + Sbjct: 591 LQQLQQLYRQSRGQQILEDYSQYLKSHAKIK 621 >gi|322652369|gb|EFY48724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 481 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 91/494 (18%), Positives = 205/494 (41%), Gaps = 23/494 (4%) Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 + G+ +Y L+ ++ G D+ + R V V++ Sbjct: 1 NQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNA 60 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + A ++ ++ ++++ K + PE R+SYI D + +S+ ++QA Y+++ Sbjct: 61 LAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHV 118 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSK 317 +++ PE + + +A +L KG+ F LA+E+ + + +G + Sbjct: 119 DQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEE 178 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 L ++ L +KG + VI S G+++A + +I+P+ EV+ DIA +++ Sbjct: 179 SATV-PELKNA--GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 235 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 KA + +++ + A + ++ E++ + + +D +E+ P + Sbjct: 236 EKALDAYYALQQKVSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEEMNFKPVAD 293 Query: 438 QLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 + + G++ + + DG V++ E P + L EV V K K Sbjct: 294 AIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKA 353 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 ++ A +L++E K GK + K G S ++R + + S Sbjct: 354 EQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSL 407 Query: 556 PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 P + + + N + + V+ K G P +K + +TQ + + +++++ L+ Sbjct: 408 PTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLR 467 Query: 612 SQYSVTVHDNLIQR 625 + + + D L Q+ Sbjct: 468 KEAKIKIGDALEQQ 481 >gi|119384865|ref|YP_915921.1| putative peptidyl-prolyl cis-trans isomerse [Paracoccus denitrificans PD1222] gi|119374632|gb|ABL70225.1| putative peptidyl-prolyl cis-trans isomerase [Paracoccus denitrificans PD1222] Length = 652 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 126/629 (20%), Positives = 247/629 (39%), Gaps = 54/629 (8%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 G++ + SVG ++ + + + E+ S + G +++ A+++G+D+ L L + Sbjct: 30 SGGTADIGSVGGVEISAQDYARTLRAEMQEFSARTGRQISAAEAKTIGVDQAALARLYTA 89 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 A L+ +G+ V G+I F G + +F ++ L REG+ E E+ Sbjct: 90 AALEAEANRLGVSVGDQAVAGQITGIAAFRGLNGQFDRAIYADALRREGMREAEFEHDLR 149 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215 ++R + + G+ ++ Q + + E R + + L +P +A P L Sbjct: 150 MDMARLILQDAALAGVSAPQPVVAQTQGWLLETRDIHWRELTAEDLPTPVATPDETTLQA 209 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 W + D + APE ++I+Y+ E ++E+ L+ Y+ E++ PE R VE+L Sbjct: 210 WHKANADRFTAPEIRQITYVWLTPEMLEGEVEVDEQALRDLYQDRIEEFQQPERRMVERL 269 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 VFP A+EA + G+ F QLA E+G SL+DI LG ++ + S +++F+L + Sbjct: 270 VFPTMAAAEEAKARIDSGEVTFEQLAAERGLSLADIDLGEVARADLG--SAGEAVFALEE 327 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G G + ++ I + F++ + D+ + + +A +++E + Sbjct: 328 PG-VAGPASSDLGPALFSMNAILEPLDIPFEQARDDLRLEAAVDRARRQIEERAGEFADL 386 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA G +++++++ + + A D G + A P + ++ KD P Sbjct: 387 LAGGAALEDMAQDTPMKLGRIDWSQGAEADPNG--IDAYPEFRERAAQLTEKDFP----E 440 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK-------------------- 494 DG +++ + P E+V V +DW + Sbjct: 441 LFETEDGGVFAMRLDKIEPPALIPFEDVRDRVAEDWSRNEGHRLLLALAEELRVQAEAAA 500 Query: 495 -----------TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 TA + + G N + ++R N Sbjct: 501 EPEIEPAPAAATAPASQALGAAATGAANATGGNAPATARPAPDLGTPATNLHRGGFINGV 560 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE--------KDKFISYLT 595 D + Q F E VF +T K+ P +D + L Sbjct: 561 -PQDVVVQAFEIAEEGATEVVDAENR---VFLITLDKIHPADTAGDEAAQIRDGISARLA 616 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + +D+ D L+ Q VT++ + Sbjct: 617 DSLRQDVFDYFARALQVQGGVTLNQTAVD 645 >gi|95930881|ref|ZP_01313612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas acetoxidans DSM 684] gi|95133123|gb|EAT14791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas acetoxidans DSM 684] Length = 664 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 105/660 (15%), Positives = 240/660 (36%), Gaps = 44/660 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML++IRK +T V K+ V+ F+ +WG + V + F Sbjct: 19 MLDLIRKKQKTTVVKVVFWVIIATFIGTIFLVWGKGRDQQRDI--TVAAQVNGTDISFEQ 76 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + G E + + L ++ ++ L+ A L + E + + + Sbjct: 77 FRTTYSNMYNLYHNLYGQNFTPELEKQLQLTRQSINLLIDQALLLEEAERMHVSISDDEL 136 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA P F D F+ + ++S L+ + + + + + + + Sbjct: 137 VKAIAEVPAFQ-VDGVFNKEQYISVLSYQRMTPELFEQMQKQQMLVNLTQAQIRSEAVVT 195 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R EN ++ Y+ D ++ LT ++E ++ +R + +S + Sbjct: 196 DEDVADEYRRLNENVNLSYVAFKTGAFTDAVDVTDDALTAYYEANQEAFRVAQQVNLSLV 255 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS------ 289 + ++ + ++Q Y+++ Y PE ++ P ++AD+A + Sbjct: 256 TLSPADYLDQVVLEEGDIQRYYDRHLATYAIPEQMAAAHILIPVAQDADDAQREKQRVLA 315 Query: 290 ---LKKGK--KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 L+K + F +LA++ LG F + + D + + F+L K +P Sbjct: 316 EQVLEKAQTGDFAKLAKQYSADTATAQKGGDLGLFQRG-VMDPAFEAAAFALQKD-ALSP 373 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 ++ FGY I + +V+ ++ +R+ +A + E ++ Sbjct: 374 IVETRFGYHIIKGGEHIEAGFTPLADVRDEVEKALRLDEARKLAYEKAMDAYNLNRKESN 433 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + ++ G + + + + +L R FG Sbjct: 434 FSAAAESLGATPVE------TGLFSQMQAIPTVGVSSELTERAFGAAAGEMLAPVNTTR- 486 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + + E+I + +L V +V + +K + ++ +A Q LE ++G + I Sbjct: 487 -GVVLATVTENIASHIPELSAVKAEVTEAYKRQQAV-VLAEEAAQKALEKIQQGAKLKSI 544 Query: 521 GKNLGASLLTTNQINRMDNE--NKFFGYDGIS-QVFSGPVEM-VKCFPIENGLSYVVFKV 576 N G + T NR E G++ F+ ++ V G ++ + ++ Sbjct: 545 ADN-GRKVQETGLFNRALGEFVPTLGNVPGLAEAAFNLTIKEPVASQLYSAGENFYIVRL 603 Query: 577 TNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 + +E + + +LL S + LK V + +++ +G + Sbjct: 604 KQLQPADPNGLTEEESQRLQQTVLSRKQDELLRSKLDELKQTAEVIIAPAILRSMEEGNE 663 >gi|327398937|ref|YP_004339806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM 10411] gi|327181566|gb|AEA33747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM 10411] Length = 631 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 124/657 (18%), Positives = 266/657 (40%), Gaps = 61/657 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD-------ALFSVS----GSSTVVSVGRQ 49 ML+ +R + + ++W + LF GS+T + VG Sbjct: 1 MLDFLRNNIKRFAI-----------VLWIAAAAFIIGGAYLFVRGPFTMGSNTAIEVGNT 49 Query: 50 KVPFSSFINSWKQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 K+ F + ++ Q + G + + + + + +K +D LV A L Q + Sbjct: 50 KISFQDYQKTYNNIYNFYVQMLTQLKGGNFSDDDLKKLNIKQKAIDILVERALLLQQAKK 109 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 G++ + V I + F+ + KFS + +++ L IN K+Y D L + Sbjct: 110 EGIKVSNEDVLRAIESNKAFYY-NGKFSKEKYLALLKANNINPKDYEDSLKTALYIDKLK 168 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 ++ S+ + + ++D++ + + + L ++++K+K +YR Sbjct: 169 KRLFKDVKVSDKDVKSFFDKNYSKINLDFVSFDISSFKSKVKVDDEKLNKFYQKHKSDYR 228 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----- 280 P + YI+ + +KKI+++++E +A Y +K+ + P V ++ ++ Sbjct: 229 IPTMVKFEYIVVPLSYVKKKIKVTDNETEAFYNAHKDYFKVPLRIKVAHILISSKDNQTD 288 Query: 281 ----KEADEAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS 331 K+AD+ ++ L+ K F + A++ LG +K+ + D ++I Sbjct: 289 SKLRKKADDVYKLLEDKKISFKEAAKKYSSDDYTRNVGGELGYVTKDMVID-EFWNNIIK 347 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L K+G+ + FGY IA V +IK F F+ VK I + ++ KA + + ++ Sbjct: 348 L-KRGEISKPFKTKFGYHIALVEDIKKPFVRPFKSVKDQIKDYLKTNKAKKVWFVEADKI 406 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 F+ + S + + + K + D+ A + LL P Sbjct: 407 --FVKIRDSKESMKKAAKEFGLPFKETDYMSLKNPQTPFTAKMVQNALLSNKGALLGP-- 462 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 L Y+ ++ + P+ ++V +KKD+ + + ++A+ + L+ Sbjct: 463 -----DLSSAGYVIYKLTDKKPSYIPPFDKVKDKIKKDYIEKQAIKLALAQADNI-LKQI 516 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKF---FGYDGISQVFSGPVEMVKCFPIENG 568 K K+ +D+ + T ++++ +KF D +S++F + G Sbjct: 517 KASKSLKDVALAFKLKVETVKNLSKLMPTDKFPCSLKEDIMSRIF--QKGKGYADKCQQG 574 Query: 569 LSYVVFKVTNSKVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 VF+VT+ + K+ + L ++L+ I LK Q + ++ L Sbjct: 575 KKIYVFEVTDKIFDEKEFNKLKESIRNELISEKENEILEKFIDKLKKQTKIKINPKL 631 >gi|270156946|ref|ZP_06185603.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella longbeachae D-4968] gi|289164629|ref|YP_003454767.1| peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae NSW150] gi|269988971|gb|EEZ95225.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella longbeachae D-4968] gi|288857802|emb|CBJ11647.1| putative peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae NSW150] Length = 624 Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 108/638 (16%), Positives = 232/638 (36%), Gaps = 39/638 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ L S ++ V V + +F S+ Sbjct: 1 MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYLQSRQTTNAKVVVNDFPLTLQAFDTSY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ M + + + A L ++LD +++ L Q G + I Sbjct: 61 RRARAM---QDLSQLTA--ADEKKLQNQVLDQMINNEVLVQAARKNGFNVSADQANAAIL 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D FS + L + + + + + F+G +D Sbjct: 116 SIPQFQ-EDGHFSAQKYQQALNAALFTQSSFQNEVKQGMLLNQQRFAFMGSSFALPDEID 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + Y ++R +Y+++ S +T ++ K+K + APE + Y+ +H Sbjct: 175 RFVSLYMQSRDYEYLIVPVSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNLSMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290 + + K+ +S+D+++ YE+N+ Y +P V ++F + A++ Sbjct: 235 DIKDKVNVSDDDVKRYYEENQNNYLTPARWHVAHILFAVPQGANKDELEKIQNKANSTYL 294 Query: 291 ---KKGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K K+F L + LS G + + L G + Sbjct: 295 LLQKDPKQFDHLVSKMSDDKLSVADNGVLPWIAAGQNEYSKLLSHLTTPGQISSPEKTKH 354 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEIS 405 GY I + + KP T EV+ I Q+ + A + + ++L + S+ ++ Sbjct: 355 GYEIFKLIDYKPVSTKPLSEVEASIKEQLVVEMAQTQYTQAMEQLSDLSYQSPDSLQPVA 414 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 + + G +I +Q++ F D D + + + + S Sbjct: 415 DALNLKIVKTQPFSREG------GAESIAKNKQVINSAFSHDVLDLGNNSDPIQIDNDSV 468 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + V++ P +++ L+ V + K + + L+ E K +D+ + Sbjct: 469 VVVRVNRHWPEKEQTLDAVHDRIHKILVKKEAETKAKKIGMSLLN--PGEEKQQKDLIVS 526 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 + + R +++ D + E F + NG + V K+ + G Sbjct: 527 NQLEWKSVVKATRDNDKEDVEINDMAFNLLR--PESKDGFVLPNGD-FAVVKLKHINNGK 583 Query: 584 VQEKD-KFISYLTQMMNKD----LLDSVIAYLKSQYSV 616 E D + LTQ + D L S + Sbjct: 584 FSELDGETQDSLTQQIEASYGMMDYDLYAKNLMSHSKI 621 >gi|296283875|ref|ZP_06861873.1| peptidyl-prolyl isomerase [Citromicrobium bathyomarinum JL354] Length = 646 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 119/640 (18%), Positives = 262/640 (40%), Gaps = 22/640 (3%) Query: 1 MLEIIRKASRTWVAKI----FLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFS 54 M+ R ++ + FLV++ + F G S + +SG+++V VG + V + Sbjct: 1 MINFFRSFFQSKIGLGLTIGFLVLIAIAFAAGDVGNSGSFGGLSGTNSVAVVGDEDVTTA 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 S + Q + +E GL ++LD L+ + +F + +G+ A Sbjct: 61 ELRQSADNAFRQVQQDEPTLSMAEFVEDGGL-MQVLDTLLDRVAVSEFGKMLGVRAGENL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 + EI F G D FS + + + L ++G+ ++ D + L V+ V G + Sbjct: 120 INSEIRMISAFRGPDGSFSTEAYRAALQQQGLTDQIVRDDLSDGLIAQQVLVPAVFGAKF 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + ++ + E R ++ DP++ L ++ + ++ PE +++ Y Sbjct: 180 PDSIVARYATQLREKREGSIALVPAELFAPKDDPTDKQLQTFYNANRTDFMRPERRQVRY 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 LF + +E + E++ Y+ N + Y + E RT QL+ P ++ A+ + + G Sbjct: 240 ALFGADQLADSVEPTAAEIKKRYDDNADLYRASEDRTFTQLIVPTRQAAESFRERVADGA 299 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 Q+AEE G I G +E + ++A+++FS A +G+ P+ GY + Sbjct: 300 SLTQIAEEAGLETQQI--GPIKREDYAQQANAAVAEAVFS-ADRGEIAPIARSPLGYHVV 356 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + ++K + + + +IA+ +R K + E ++ + G S +I+ + Sbjct: 357 RIDDVKTIPARTLAQARDEIADALRADKQRRALTELASDIDARVTSGESFADIAEALDLD 416 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + G+ G++ P Q L+ VF + + V + ++ + E Sbjct: 417 IQTTRPLLADGQVYGGQQGETAPEVVQPLIQTVFQMREGQPQIAEVETGE-TFALYEASE 475 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 PA L+E+ V W + A+ + ++++ L+ K+GK+ + + L Sbjct: 476 ISPAAVPPLKEIRDAVTARWTMAEGAKAAKAASDRI-LKRVKDGKSLAEAIRAEETRLPP 534 Query: 531 TNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 + R IS +F+ K + + ++ G V + D Sbjct: 535 PQPLSLTREQMMQMQRPNPPISLMFAMSAGTAKRLEAPRNAGFFLVQLDEITAGKVAKDD 594 Query: 589 KFI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + Q+++++ D + ++++ + + + I+ Sbjct: 595 PLMGEARRGYGQLLSREYGDQLRNAIRTEVGIERNADAIE 634 >gi|261380152|ref|ZP_05984725.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava NJ9703] gi|284796990|gb|EFC52337.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava NJ9703] Length = 617 Score = 316 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 116/638 (18%), Positives = 239/638 (37%), Gaps = 59/638 (9%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 65 NAPS--------RDAVFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGKK-FIQLA 300 Q Y+ K SP + + P + E D+ LK+ F +LA Sbjct: 237 QKAYDS-KSVDLSP-RAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKEHPDSFAELA 294 Query: 301 EEQGKSLS----DISLGSFSKEYIP--DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 + K LS +LG SK + F+L K G+ + + S GY + V Sbjct: 295 AKYSKDLSSSNKGGNLGYLSKGGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVL 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSI 413 N++ + ++ K I +++ KA+ ++L E+ +S+ + + + Sbjct: 354 NVEAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDAFNDPSSLAKAAANSGLKVE 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKES 471 +L G + A +P E L+ F D K +A+ + + ++ KE Sbjct: 412 NLDE----WVTRAGAKEAGLP--ETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEV 465 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + EV +V+ ++ + A+ KA + + K Sbjct: 466 REEKIAPFAEVKDNVRAAYQRSEAAKLAEKKAQETLAALKAG--------KAADVQWSPV 517 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590 +Q++ D + + + PV + + G+ V S P + Sbjct: 518 SQLSAQDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSAPENADSQIP 577 Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L Q ++ ++ D+++ YL + T + Sbjct: 578 AAKQALVQQLSANVFDALLQYLDKKIDRTQGAQQVNNA 615 >gi|322508302|gb|ADX03756.1| ppiD [Acinetobacter baumannii 1656-2] Length = 601 Score = 316 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 103/615 (16%), Positives = 212/615 (34%), Gaps = 33/615 (5%) Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81 P + G+ + + +V Q + ++ + + Sbjct: 1 MTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKG--DESLLN 58 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 + K LD LVS L Q E +G+ + ++ +A+ P ++ +FS ++ + L Sbjct: 59 LPVIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQPSLQ-ENGQFSQKLYENYL 117 Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 G+ + I + + + F S + L Q E R++ + Sbjct: 118 RSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLASIKLDP 177 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 A S+ T ++ K+++ ++ P + Y++ K ++ EL+ Y K Sbjct: 178 YKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFV 237 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLG 313 E R V+ ++ D A Q L K G F Q A + + + + G Sbjct: 238 ETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKG 297 Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 + Y P V + ++ SL K G + + +GY I + + + SF+ K Sbjct: 298 GLVEAYAPGVFSDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKPR 355 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ K + + L E + S+D + ++ K I+ Sbjct: 356 LIAEVEKNKVASVYSDTVNSLNETIVGNDSLDAVVQQVKGTKIE---SLNGVTLATQNPY 412 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + P + LF K+ + + L +G +WV++++ A + L + + +VK Sbjct: 413 LSDPNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVKAKV 472 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 K + +K ++ E+ + + + + R ++ Sbjct: 473 IDEKARKAAQAKIATMLTEFKTQ--PAEQVVAKNKVAFESAGVFTR----SQGLKRAIER 526 Query: 551 QVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDL 602 FS P V + N L V NS P + + Q + + Sbjct: 527 AAFSVPAPKPGMWSVTIANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSRGQQI 586 Query: 603 LDSVIAYLKSQYSVT 617 L+ YLKS + Sbjct: 587 LEDYSEYLKSHAKIK 601 >gi|71066028|ref|YP_264755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter arcticus 273-4] gi|71039013|gb|AAZ19321.1| possible PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter arcticus 273-4] Length = 624 Score = 316 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 241/640 (37%), Gaps = 30/640 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ +R ++W +I L++ P + G+ + + VG + S + + Sbjct: 1 MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + V ++ L +++L L+ L+Q +G+ + + + Sbjct: 61 NRRTELLDQ---VDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQ 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +F G+D +FS+D F S L + + + + + LS + VG + Q Sbjct: 118 EEIFKGEDGEFSNDQFASFLRQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKAVSQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E+R++ N + + + + + +++ KD ++ ++Y+ Sbjct: 178 LIDLQLESRNIWLHRFNWQDYVSQVKLNKSDIQAYYDANKDTLKSAAMVDLAYLQLSPQT 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSLKKGKKFIQ 298 + E++ ++LQ +YE K+ + R + Q++ + AD+ L KG+ F + Sbjct: 238 IQVN-EVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKVKARLAKGEVFTK 296 Query: 299 LAEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ + S + G + + D + + GD + + SFGY I V+ Sbjct: 297 LAKTESDDPSGEAGGDIGRFNPSVFGNDAAAVEKALEGLSVGDVSVPVKTSFGYQIFTVT 356 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 S S + ++ D+ + + K E + + + A G S+++I+++E + Sbjct: 357 EDSGSKIPSLESMRDDLTAKAKEYKRQEVYADKVTAINDLAADGFSIEDIAQQENVALKR 416 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SYMWVQIKESIP 473 L KD + + ++ + ++ + F + + T + G +WVQ P Sbjct: 417 L-------KDYRKENNKSVLAQPAVIKQAFDEFTIQDQAVTAGIEVGNGTVWVQPSNYRP 469 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L V + + K + A +L K DI K + + Sbjct: 470 TKTLSLSAATPSVTQLLRQQKASALALKDAKKLAAGI----KTIADISKQ-SVTFQALGK 524 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-----KVTNSKVGPVQEKD 588 I+R + G++ P + V E + V K ++ Sbjct: 525 ISRQTTQLTEKER-GLAFSKQAPEKGVVAVASETEMGATVLVGDRIKTEQQSPLSAAQRA 583 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + + + + +D L + YL+ Y V ++ ++ Sbjct: 584 QTAAIIRDNLGQDQLQDYLDYLRMVYKVEINKANMENAQG 623 >gi|325122070|gb|ADY81593.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter calcoaceticus PHEA-2] Length = 582 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 97/593 (16%), Positives = 206/593 (34%), Gaps = 28/593 (4%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E R + W+ K+ L++ P + G+ + + +V Q++ + Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + K LD LVS L Q E +G+ ++ +A+ Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P ++ +FS ++ + L G+ + I + + + F S + L Q Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R++ + SN T ++ K+++ ++ + Y++ Sbjct: 178 IANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSM 237 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKG 293 K + ELQ Y K E RTV+ ++ QK A E + ++ G Sbjct: 238 MAKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVI 350 F Q A + + S + G + Y P V + ++ SL K G + + +GY I Sbjct: 298 LSFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVLSL-KNGQVSQPVKTQYGYHI 356 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + SF+ K + ++ K + + L E + S++ + + K Sbjct: 357 IE-AETQANQIPSFEAEKARLTAEVEKNKVATVYSDAVNSLNETIVGNDSLEAVVQEVKG 415 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 ++ + P + LF K+ + + L +G +WV++++ Sbjct: 416 AKVE---SLNGVTLATQNPYLSDPSVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 A + L + + + K K + +K ++ E+ + + + + Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDAKARKAAQAKIATMLTEFKTQ--PADQVVAKNKVAFES 530 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSK 580 R ++ + FS M VV V+N Sbjct: 531 AGVFTR----SQGLKREIERAAFSLATPKPGMWSVTTANLPNELVVVAVSNVN 579 >gi|241758711|ref|ZP_04756824.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114] gi|241320919|gb|EER57132.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114] Length = 617 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 118/638 (18%), Positives = 236/638 (36%), Gaps = 59/638 (9%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S I +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 65 NAPS--------RDAIFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGKK-FIQLA 300 Q Y+ K SP + + P + E D+ LK F +LA Sbjct: 237 QKAYDS-KSVDLSP-RAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELA 294 Query: 301 EEQGKSLS----DISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 + K LS +LG SK + F+L K G+ + I S GY + V Sbjct: 295 AKYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTIKSSLGYHVIKVL 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSI 413 N++ + ++ K I +++ KA+ ++L E+ +S+ + + + Sbjct: 354 NVEAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAAANSGLKVE 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKES 471 +L G + A +P E L+ F D K +A+ + + ++ KE Sbjct: 412 NLDE----WVTKAGAKEAGLP--ETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEV 465 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + EV V+ + + + KA + + GK Sbjct: 466 REEKIAPFAEVKDTVRAAYLRSEATKLAEKKAQETLAAL--------KTGKAADVQWSPV 517 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590 +Q++ D + + + PV + + G+ V S P + Sbjct: 518 SQLSAQDARKTMSPEAYAALLKARPVGGKPAYALLEGMPAPVIMEVQSVSAPENADSQIP 577 Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L Q ++ ++ D+++ YL + T + Sbjct: 578 AAKQALVQQLSANVFDNLLQYLGKKIDRTQGAQQVNNA 615 >gi|304322182|ref|YP_003855825.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula bermudensis HTCC2503] gi|303301084|gb|ADM10683.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula bermudensis HTCC2503] Length = 616 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 126/631 (19%), Positives = 254/631 (40%), Gaps = 21/631 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML RKA++ A + L + + F G+ S SG + VG ++ + Sbjct: 1 MLTTFRKATKGVGAWVVLGLAILAFAFVGVP--TLSGSGGQEAIRVGGTVFEVAAVEEEF 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + E A + GL +++ + A + + + +GL + + Sbjct: 59 SRRFQRQQRGENAPASREEAVAAGLLDQVVRDYGLRALILEEADTLGLAVSPEMLTTYLR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F +D +F + F LA ++ E D + L + G+ +L Sbjct: 119 AQPAFLDEDGEFDSNRFNRVLAANQLSLTELRDRLSLELIEGQLNRAVATGVGAPAILAQ 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 E R V + + P IA PS L Q++E+ + YR E + +Y+L Sbjct: 179 SLALRQGEERDVSLVTFSA---PEIAAPSEENLRQYYEERQGRYRTGEARGFTYLLLTDD 235 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 +I IS+++++ Y+ +PEIR++ Q F + A +A +++ G F Sbjct: 236 TIGAEIAISDEDVRQLYDARVGSLGTPEIRSLTQAQFRDASAARDALAAIEAGAAFNDAV 295 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E G +L +L ++ I D ++A++ F+ A I G FG V+ +++ I P+ Sbjct: 296 EAAGGTL--ATLDGVTESAIADQAVAEAAFAAASP-AILGPIDGIFGTVLVNLTQIVPAT 352 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T SF+EV++D+ +R +++ + Y ++ GT + E ++ + ++ + Sbjct: 353 TPSFEEVREDLEAALRQEDLGQRIDDIYTEIQFAGDDGTPLAEAAQGLDLSAVTISPKPL 412 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 A + L P + V LP+G + ++ E +P+ + E Sbjct: 413 AA-------LQDDDRLPPALLAAVFTTAPGAYFEEVRLPEGGVAFFELGEIVPSSVQPFE 465 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 V +V DW+T + E + + V+ +G++F D G ++ T + Sbjct: 466 AVEEEVATDWRTDQRIEALRG-VREAVMSAIADGQSFADAVAAEGETVSTRTL--SANVL 522 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK---VGPVQEKDKFISYLTQM 597 N + +FS P+ V + + KV + + + L++ Sbjct: 523 NDDLPPALVEAIFSRPIGEVLDALGSDRTDLTLAKVEDVRFIAPSTAPSLAQLRQTLSRD 582 Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + DL ++ + + Y + V+D L+ Sbjct: 583 IATDLFEAYLLSAEQDYGIRVNDGLLAERFG 613 >gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus influenzae Rd KW20] Length = 594 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 98/593 (16%), Positives = 226/593 (38%), Gaps = 31/593 (5%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLD 100 V + + F+N + QE + +Q+ G + L + I++ ++ L Sbjct: 16 AKVNGEVISQQDFLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLR 75 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q+++++ L + I P F K KF + V+ L + + Y L Sbjct: 76 QYVKELKLGVSDEMIKRAIVTDPNFQVK-GKFDNAVYQRILQQNHLTSDGYASILRASLP 134 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 + + + +F+ R L+ A S+ + ++E Sbjct: 135 LEQIQNGVANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEAN 194 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + ++ PE ++ YI + +++++ E+ Y+ NK ++ + + + F N+ Sbjct: 195 QKSFVQPEQVKVQYIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANE 251 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++A A++ L+KG F +A+ + + LG ++ +P + D+ +L + G Sbjct: 252 QDAKVAYEELQKGANFADVAKAKSLDKISGENGGDLGWVNENELPK-AFEDAAAAL-QVG 309 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 ++ I+ Y I V K S + VK IA+ +R + + K+ + Sbjct: 310 QYSQPINVDGNYHIVLVQERKA---QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 366 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDH 454 ++ + + + D+ + + V A +++ +F D + Sbjct: 367 E--DSKSLNTAAQAAGVKVQESDYFSR----QNVPAGLNFPNVIYTIFESDTTNVGMNSE 420 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + + D + V++ + + LEE D++ K K ++ KA Q V + S+ Sbjct: 421 PINVGDYHTIIVRVLDRKAEGVKSLEEAKIDIETFLKRQKAENALNGKAQQAVKKLSENP 480 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 ++ D G + + +N++ S + + + VV Sbjct: 481 ESKVD-----GINFSSEQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVV 535 Query: 575 KVTNSKVGPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + + G + EK+ +F L + +L +I L+ + + V+D+ I + Sbjct: 536 ALNKVEQGSLSEKELSQFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 588 >gi|319779411|ref|YP_004130324.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9] gi|317109435|gb|ADU92181.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9] Length = 644 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 245/638 (38%), Gaps = 31/638 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE RK S+ WV I ++++ F+ +G S +V V ++K+ F SW Sbjct: 1 MLEFFRKHSK-WVLFIIIILIVPSFVFFGTSKYSGMSISEKPLVKVNKEKITERQFNKSW 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + L + ++G + L+ +V + Q V IA Sbjct: 60 TERLNSLRDQLGNNFKVSEIDTPANRNLWLNKIVDDILITQTANKNKFFGSDSMVRSAIA 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F D KFS + + + L I +EY ++ VV + L+ Sbjct: 120 LDPKF-AVDGKFSMENYNAFLTSANITSQEYENYLRANTGINLVVEPLINSTLVPLTTLE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKRISYILFDV 239 + K+ + R V + N L W++K + YR PEY + Y L + Sbjct: 179 ELKKHVTKTREVQTKIFANEDFINAVSVDEKELEDWYKKNSEEKYRVPEYVNVEYFLLNQ 238 Query: 240 HEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFI 297 + + + D L++ YE NK ++ + E R V + +++ A ++ LK KF Sbjct: 239 KAAVDLVPQPNEDALKSYYENNKNRFSTEERRFVRHIQLDSEERAKAIYEELKTTPNKFE 298 Query: 298 QLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + + G + LG K IP + +++F+L K G T + + I V Sbjct: 299 EFVLSDSLDAGTKNNKGELGFLKKSDIPG--IENTVFALDKPG-ITGPVKLGNSFHIFDV 355 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVS 412 I+ + SF+E+K + N++++ AS+K E L + + I+ ++ Sbjct: 356 VQIEKAKVKSFEELKDTLVNEVKLQIASDKFAELSTNLTNLVHDRSDDLKTIAEDLQLQV 415 Query: 413 IDLPLVDFAG-------KDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463 + + +G + V E+ I +++ + + + + + + Sbjct: 416 SQVFGLSKSGLISDVPNQMVLSDELKKIFNSPRVIDTAYSSEVYNQGQNSGVIEISPSEF 475 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + +I + + ++ +L+ V V +D++ K AE ++ KA + K + + Sbjct: 476 LVFKILDKVESKVPELKAVKAKVTRDYQLEKGAE-LAKKAGDEFINIYKNNPS-EAPKAS 533 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVG 582 G+SLL + N + + V + P + + + E Y V +V + Sbjct: 534 DGSSLLRDPIETSIFASN--LPENLMRDVMAIPNDKLPTYVAGEVPDGYAVVRVIKDAIP 591 Query: 583 PVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSV 616 + F + ++ + DS A L+ V Sbjct: 592 DERMVRVFEQQFPIIVKNGVSAQVGDSYKASLRKTNKV 629 >gi|285808228|gb|ADC35762.1| peptidyl-prolyl [uncultured bacterium 293] Length = 640 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 122/656 (18%), Positives = 248/656 (37%), Gaps = 47/656 (7%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINS 59 L +R+ R W+ + L V + F++ + A V VG++K+ F + Sbjct: 3 LGYMRRH-REWLKYMLLAV-VLAFILLYIPAFQAGPGGGPGEEVARVGQEKITAGEFDRA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + ++ + ++ V+ +G+ +++L+ L+ G + Q +GL D V +I Sbjct: 61 FSRQRDALREQ---GVDPAMLEQLGVREEVLNGLIDGKLIVQEARRLGLAVDDEAVAAQI 117 Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 R + + +F D RLA +GI+E E + + L + + G+ S+ Sbjct: 118 HR--EYQSRGGEFVGTDEIRRRLALQGISEDEKAEQVREQLLVQRLYALVTDGVHVSDQD 175 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ R E V+Y+ ++ A ++ + F+ ++ YR PE + I Y+L D Sbjct: 176 AEKEFRRSSEKVKVEYVAVDAAPFATRATATDEEVAARFQSRREAYRIPERRVIGYLLLD 235 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------- 285 K++++S+ +++ YE ++ ++ P+ + ++ AD Sbjct: 236 AMALSKEVKVSDVDIRTYYEDHETQFQQPDEACARHIEVKVKQTADAPAGHTEEEARVLA 295 Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP 340 +K G F ++A++ + S G P+ L +IF+L + Sbjct: 296 QKLLDQVKGGADFAEVAKKSSEDPGTSSRGGDLGCGGPETWGPELGQAIFTLP-VNQVSD 354 Query: 341 VIHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 +I G+ I V + + VK+ I + + K E +E ++ LA G Sbjct: 355 LIRTQAHGFHIVQVLSRRQQGVQPLDSVKEGIRHILVQGKTRELAEERSSKISAALAKGE 414 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+++ + + G + + LL R F S Sbjct: 415 SLEKAGQLYGLTVQK-------GAPIARGQRVPPLDSPDLLARAFTLKRGESNPEPFGTA 467 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 G ++++ + + R +L EV V+ D + K KA QL + G + Sbjct: 468 QG-WLFIDVLDIQAPRLPELAEVQDRVRADLQDEKARALARDKAVQLRAQAEGAGLDKAA 526 Query: 520 IGKNLG-ASLLTTNQINRMDNENKFFGYDGIS-QVFSGPV-EMVKCFPIENGLSYVVFKV 576 + G TT + R + + FS PV + + P G Y V +V Sbjct: 527 VALGPGLVRKETTTPVTRGQSFGDLGTNQALEDAAFSLPVQGLSEALPSPGG--YAVLRV 584 Query: 577 TN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 +K + +S L Q + L + I + ++ + ++R Sbjct: 585 LEKTPFDPAAFAAQKAEVVSKLEQQQKRQLFQAYIERARDRFPIERRPEALRRLKG 640 >gi|254480567|ref|ZP_05093814.1| SurA N-terminal domain family protein [marine gamma proteobacterium HTCC2148] gi|214039150|gb|EEB79810.1| SurA N-terminal domain family protein [marine gamma proteobacterium HTCC2148] Length = 626 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 104/642 (16%), Positives = 223/642 (34%), Gaps = 41/642 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK S+ +AKI + ++ V F +G+ L GS V V +++ + Sbjct: 1 MLQDIRKNSQGTLAKIIVGIIVVAFAGFGIESILLGGGGS-AVAEVNGEEITPQELQQAV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G ++ L ++ + L+S L Q +D+GL +V I Sbjct: 60 NNQKRQLISMMGENLDPAMLDDQLLSQQAMQTLISRKLLVQSADDMGLTVSDTQVGALIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D +FS +++ +RL G + T + V G + L+ Sbjct: 120 SMEQFQL-DGQFSPELYRARLGEAGFTPLLFKTTLTDDIKVGQVRSGLAGSEFATPGELE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 R E R + YI + + A S+ + Q++ D++ + E + YI Sbjct: 179 LNARIVGEQRDLRYITIPLETHASEAVISDPQIQQYYADNSDSFLSEEAVELDYIELRSD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEAFQ-SLKKGKK--- 295 + +E + YE+ V ++F E+D ++Q L + Sbjct: 239 SFREAVE--EQMIVDAYEQEIANSQYQTENRVSHILFEQGGDESDSSYQERLSDAQSRLA 296 Query: 296 --------FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 +L+++ G + S LG S + P + ++I L G + + G Sbjct: 297 AGEAFAAVAQELSDDIGSASSGGDLGFTSGDAFP-AEMEEAIAELELNG-ISAPVVTDAG 354 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 I ++ + +E++ + Q+ +++A ++ + L++ S+ + + Sbjct: 355 THIILLTERRSGEAPPLEELRAGLEEQLAMSEARVELLRMVETLKDLAFNAESLADPATE 414 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 S+ + + +D K + L+ F D + + L ++ Sbjct: 415 L---SLQIGQTEKISRDQKD----GLFANANLIAAAFSDDVLNAGHNSDVIELDQDHWVV 467 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + ++ PA LE+V + + A A + G+ + G Sbjct: 468 LSVRAHHPAEVMPLEDVQGVIVAQLT-DERARAAVDAAAVQATSSLRAGEQVEAYATSAG 526 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKV 581 +R N D + F + + +V++VT Sbjct: 527 YQWQVELAADR---RNTMVPADILQSAFQLAAPAEGSSVIDYVLSANGDALVYEVTRVSP 583 Query: 582 G-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 G P ++ + + + + L+ ++V Sbjct: 584 GELASLPESDRAGLEQIVGGEYGQLIDNEYRQGLQDSADISV 625 >gi|88703271|ref|ZP_01100987.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis KT71] gi|88701985|gb|EAQ99088.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis KT71] Length = 622 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 109/638 (17%), Positives = 238/638 (37%), Gaps = 37/638 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ VAKI + ++ + F I+G+ LFS GS V V +++ + Sbjct: 1 MLQDIRANAQGTVAKIIIGLIVISFSIFGIESLLFS-GGSDGVAEVNGEEITPFALQQEV 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G + L ++ L+ L+ + Q D+ L + I Sbjct: 60 SVQQRRLLSILGENADPALLDQAQLSQQALETLIQREIIKQAAADLELTTSDQALADIIG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D +FS D+F S LA G + + ++ + + G + L+ Sbjct: 120 SMGQFQ-IDGQFSPDMFQSALASAGFTPALFRERLSEDVEIGQLRAGIAGSDFTTAAELE 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 A E R V Y+ L A + S+ + ++ + +++ E + Y+ + Sbjct: 179 LASAIALEGRDVRYVSLPLIDFMASVEVSDEAVEAFYNDNPERFQSEEQLVLEYVEITLD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKKGKK 295 + +I + ++ E+E ++++ V ++ E EA +L G Sbjct: 239 RYIE--DIDEERVREEFELVRDEFELATEARVSHILVEGDDEERAARIAEAQAALDAGMS 296 Query: 296 FIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F + A E + LG + + P+ ++ D++ +LA G+ + + G + Sbjct: 297 FAEAAAEYSDDIGSSQFEGDLGYTAGDTFPE-AMEDAVANLA-VGERSAPVETEAGTHLL 354 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V++ + VSF+EV +++ +++ A+ ++ D +RL + +D + Sbjct: 355 LVTDRREGSNVSFEEVAEELEDRIARRDAAAELLSDVERLRDIAFNAADLDAPAEA---- 410 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIK 469 L L V + + + LL F +D + + L ++ +++ Sbjct: 411 ---LELTVQTSDPVTRNQREGLFSRPVLLQAAFSEDVLEAGHNSEVLELSPEQFVLLRVA 467 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 E P LE V ++ +D + A E ++ + +L +G + G Sbjct: 468 ERRPPAQVPLESVAGEI-EDLLRDRLAREAAAAEARELLAALDDGNTVEEAANAAGFQWQ 526 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--- 582 R ++ ++FS V+ ++ + + ++ G Sbjct: 527 VELGARR---DSPTLPPVVRERLFSMAAPTDGNAVREIVSDDPDATYIVELARVNAGDPE 583 Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P +E++ + L L+ + V V Sbjct: 584 DLPAEEQNSLRQRIAGETGGTLQQQYERSLRERVEVIV 621 >gi|88607320|ref|YP_505198.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum HZ] gi|88598383|gb|ABD43853.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum HZ] Length = 601 Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 114/610 (18%), Positives = 264/610 (43%), Gaps = 25/610 (4%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 L + V +G + +P + ++ EL + + + ++ + G+ + +L Sbjct: 2 GKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKMLQHKLSDAQINQFGIKEVVLK 61 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 N+++ +++F D+G+ + I +F + F + + + LA G+ E Y Sbjct: 62 NMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGVFDQERYEAVLADSGMTESSY 121 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPS-----NLLLDQAKRFYFENRSVDYIVLNNRHVP-AI 205 ++ L T ++ + L ++R D + +++ V + Sbjct: 122 VNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGLLQHRVADIVEISSDAVDISG 181 Query: 206 ADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 +D S+ L + FE+ YK++ PEY+ YI+ + + +S+ E+ E + ++ Sbjct: 182 SDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEIKNSELH- 240 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324 + R V LVF ++ EA+ A+++ ++GK F +L + G ++ DI+L + SK+ +P V Sbjct: 241 ---DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLP-VG 296 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + + +F+L +G+ + + G+ I V +++K+ I++ +R KA E + Sbjct: 297 VRNVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELL 355 Query: 385 KEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLVDFAGKDVKGKEVAAIPYKEQL-LFR 442 + K+ + ++ G S++E+ +S L D G D G V P + + F Sbjct: 356 VSNVKKANDMISRGASLNELKDMFGARISGVLTNFDMHGLDKSGNLVKDFPLQLGINAFT 415 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + K + +Y V + E +P R R LEE + + ++WK+ +++ Sbjct: 416 TLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEESRSILTEEWKSALRMKKIREF 475 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE---NKFFGYDGISQVFSGPVEM 559 A +L + + G + G S + + D + + + ++F+ + Sbjct: 476 AVELRSKL-QNGTELSVV---NGVSFKKNVTVKKSDGSTDNDSKYPERLVDEIFAINIGG 531 Query: 560 VKCFPIENGLS---YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 V I++ + K ++ + + ++ + + ++ YL +Y V Sbjct: 532 VTKEVIDSESETVYIALLKEIKDAEISEEDLESYKAHFVSSGILSIREQLLGYLMKKYGV 591 Query: 617 TVHDNLIQRY 626 T+ ++L+++ Sbjct: 592 TIENSLLEKV 601 >gi|85374123|ref|YP_458185.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594] gi|84787206|gb|ABC63388.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594] Length = 647 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 115/638 (18%), Positives = 237/638 (37%), Gaps = 17/638 (2%) Query: 1 MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFS 54 M+ R+ ++ + L ++ + F +S VSG V VG QKV + Sbjct: 1 MINSFRRFFQSKIGIGIFVGFLALIAIAFAGADVSSTGTFGGVSGGDRVAVVGEQKVGTA 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + L + Q + GL++ +++ L+ + +F G+ A Sbjct: 61 ELSRAASNALDQLRQNDPTLSMPAFIDQGGLER-VVETLLDRIAIAEFGRKYGMRAGDNL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V EI R P+F G D F + + + +AR+G+ + D L V+ G Sbjct: 120 VNSEIRRIPVFRGADGNFDEETYRAAIARQGLTDAVVRDDLGDGLIAQQVLVPGSFGATI 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L + + E R ++ + +P++A + ++ K +Y PE + I Y Sbjct: 180 PDKLASRYAALFKERRRGAIALIPSTSFAPDGEPTDAQVQAYYNANKGDYIRPERRVIRY 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 F + E+ YE++ +Y + E RT+ QL+ P Q+ A + G Sbjct: 240 ATFGESAVADVGTPTAAEIANRYEQDASRYAASEERTLTQLIVPTQQAAQTFRDRVAGGA 299 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +A E G I S+ + +G PV G+ + V Sbjct: 300 SLETVAREAGLEAQQIGPIDRSEYGAQASAQVAQAVFGTARGQVAPVARSGLGWHVVRVD 359 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 ++ S + +++I + + + E + +E+ A G S+ +++ Sbjct: 360 DVNRIEGRSLAQAREEIVSTLTQERRRRAFNELAESIEDRFADGESLADVAAEVGAEVQT 419 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + AG + A + L F ++ T A+P ++M + + P+ Sbjct: 420 TRPLTGAGIVYGTQNEQAPEILRRALATAFQMEEG-EPQLTEAVPGETFMLFEASDITPS 478 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 L E+ V DWK + A+ + VL+ +G++ + AS+ +Q+ Sbjct: 479 APAPLAEIRDTVVADWKRAEGAKRARAA-ADRVLKRLGDGQSLAAAVRAEDASIPPIDQV 537 Query: 535 NRMDNENKFFGYDGISQ----VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588 N + G G+ +FS K + + + + + + G V D Sbjct: 538 NLTREQLVQRGERGVPAPLALLFSMAQGTEKKLEAPRNIGWFIVDLDSIEAGVVGRDDPL 597 Query: 589 --KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + S Q ++ + + +++ ++ ++ I+ Sbjct: 598 FRQAKSQFGQTFGQEYGEQLRLAIRNDVTIERNEAAIE 635 >gi|302383248|ref|YP_003819071.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193876|gb|ADL01448.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 638 Score = 311 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 108/634 (17%), Positives = 226/634 (35%), Gaps = 15/634 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA-LFSVSGSSTVVSVGRQKVPFSSFINS 59 M+ + R +++ A V+L + FL+ G S +FS G +V+ G + V F Sbjct: 1 MISLFRAFAKSKWAAGLFVLLILSFLVVGGSQTDIFSSLGPKHIVTAGDRSVDALQFRTE 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ + ++ G V +E + + L+ + + G+ V I Sbjct: 61 FERVRTGMQEQAGRPVTNEDLVKENVHVRYLEGQTNRLGFLDWAYKAGIRVSEELVLTRI 120 Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 P F + +F + LA + + D + G+R + Sbjct: 121 REIPAFFNQVTGQFDQAQYEQALAAQNVTPVMLEDEFRDTAVSQHYGTAIQAGLRTPRIY 180 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 F+ R + + P++A LT + + R PE++ + +LF+ Sbjct: 181 GALLAGQAFQVRDGRWFEVTQAMAGTTPAPTDAQLTAFINENAAQLRRPEFRIATVLLFN 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 I + + K+ +PE RT L Q AD +L+ G+ Sbjct: 241 DAPGFTPPAIPEARVVERFNFRKDALSTPERRTFTTLTVSTQAAADRIAGALRAGQTPQA 300 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 +AE + + + +PD ++A ++F LA + I G G+ +A VS I P Sbjct: 301 VAEANS--IQPAVYDAQPRSALPDPAVATAVFGLAAN-QVSAPIQGRVGFTVAKVSVILP 357 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + V++ + +++ +V + E+ G + + + + LP Sbjct: 358 GTPATLDSVREAVTAELQEEDMKARVYARVEAYEKARTEGKPLAAAAEQVGARFVQLPPF 417 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G+ G+ + A P Q+L + D + G Y +++ + PA Sbjct: 418 TQDGRLPDGQPMNAPP---QILQSAYALTKGGESD-VIDAGQGQYFVLRLDDIRPAALPT 473 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L E+ + + W + A +S+KA +L + G++ + + GA+L+ + + Sbjct: 474 LAEIRGPLAEQWTQRENARRLSTKAEELATR-VRGGQDIAAVAASAGATLINRTGLQQNA 532 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 G + +F V P +VV +V + + + + Sbjct: 533 ETQTALGQGVLEGLFGQARGQVFTGPGTEN-RFVVGRVDAVRSADPATASRLADQIRSRI 591 Query: 599 NKDL----LDSVIAYLKSQYSVTVHDNLIQRYLD 628 D+ ++ ++ + L Sbjct: 592 GNDIVTAGVEQLVTAAAVRSKAKNDPAAAVAALG 625 >gi|85708717|ref|ZP_01039783.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1] gi|85690251|gb|EAQ30254.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1] Length = 645 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 108/639 (16%), Positives = 238/639 (37%), Gaps = 19/639 (2%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFS 54 M+ + R ++ + FLV++ + F +S + ++G V VG + + + Sbjct: 1 MISLFRNFFQSKIGLPIFIGFLVLVALAFAASDISGSATFGGLTGDDKVAVVGGEPITSN 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + L + + + + GL+++ L+ L+ + QF ++ GL A Sbjct: 61 EMSGAMNNALDRARDQNPTITMPQLVANDGLNRE-LELLIDRFAIGQFAQEYGLRAGENL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V EI + F +F + + L R+GI + L ++ + Sbjct: 120 VNSEILQIGAFRNVTGEFDQATYQAALRRQGITDAILRKDIADGLLAQQLLRPAFAAPQL 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 Q E R ++ + DP++ L ++ + + N+ PE + I + Sbjct: 180 PRAAARQYAALVLERRQGRIGLVPSSEYAPDGDPTDEQLNTFYSENRANFILPERRTIRF 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 F + E ++ ++ A YE + +Y + E R + V P + A + ++ G Sbjct: 240 ARFGADSVQTVAEPTDAQIAARYEADAAQYAAQERRAISTFVVPTEAAAQALVERIRAGL 299 Query: 295 KFIQLAEEQGKSLSDIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A++ G ++S L S +LA+++F+ +GD G+ +A V Sbjct: 300 SLEAAAQQAGFNVSSGELLDRESMSSSTSFALAEAVFA-ESEGDVITPQRSQLGWYVARV 358 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +++ + S +V+ +IA Q+R + ++ + ++EE + GTS+ + + + + Sbjct: 359 DDVENTPARSLADVRGEIAAQIRREAVAAQLIDLSSQIEELVDTGTSLMDAATQFGLEVT 418 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 +P V G+ +L F D+ + ++ + + Sbjct: 419 AVPGVLADGRIFGTPGQTLNQAVRPVLETAFQMDEG-EPQLAELVAGEQFLIFDVSDITE 477 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + + EV +V W+ + AN++ LE + G + + SL + Sbjct: 478 SAAPPIAEVREEVTAAWRRNEGNRIAQQAANRI-LEDVRSGTPLAEAMRAENPSLTQVER 536 Query: 534 INRMDNENKFFGYDGISQV----FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 I+ E + FS K EN L + + + V V + Sbjct: 537 IDLERRELLANPNQRVPTALILMFSMAQGSTKILEEENDLGWFLVDLDEIVVPEVANDNP 596 Query: 590 FISY----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + L Q + + A ++ + V ++ ++ Sbjct: 597 ILDQTQNSLAQALAGEYNAQFAAAVREEVGVERNEEAVE 635 >gi|283856265|ref|YP_162202.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ZM4] gi|283775260|gb|AAV89091.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ZM4] Length = 642 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 109/644 (16%), Positives = 246/644 (38%), Gaps = 33/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53 M R+ ++ A + ++ + F+ G + S T+ +G++K+ Sbjct: 1 MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 S + +++ + Q+ + S G+ K I ++ ++ ++ ++ G+ Sbjct: 61 SEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSEWAKNNGIGVSQK 119 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 V GEIA P+F G + KF +F + LA++ + + + + R ++ V G++ Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 N + + R + + + + P+ P + + +++ + + Y PE + I Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQRVI 239 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y L +++ + ++ ++ + +Y + E R + Q++ P++ A+ + Sbjct: 240 RYALVKP----DEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F+ A+ G S DI LG+ SKE + A++ FSL G + V+H G+ Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGTLSKEQYSEKASPEAANAAFSLG-DGAVSNVLHSPLGWH 354 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I HV I+ + +++ +I Q+ + S+ + R+++ ++ G +I+ +EK Sbjct: 355 IVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEK 414 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + + D + + L+ F D Y + Sbjct: 415 LEVVQTAPLRRDASDDQ--------IVKSLVTPAFESGKNSEPFVATITADKLYALAMVD 466 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 I + LE+V V D + + E+ A+ L L+ +K G F + G L Sbjct: 467 HVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGVPFAQLAAQAGVKLP 525 Query: 530 TTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVG 582 + + F + F V P + +++ K V++ Sbjct: 526 PVTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSK 585 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + MM D+ + + + + + Sbjct: 586 EAGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629 >gi|260753024|ref|YP_003225917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552387|gb|ACV75333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 642 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 109/644 (16%), Positives = 246/644 (38%), Gaps = 33/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53 M R+ ++ A + ++ + F+ G + S T+ +G++K+ Sbjct: 1 MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 S + +++ + Q+ + S G+ K I ++ ++ ++ ++ G+ Sbjct: 61 SEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSEWAKNNGIGVSQK 119 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 V GEIA P+F G + KF +F + LA++ + + + + R ++ V G++ Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 N + + R + + + + P+ P + + +++ + + Y PE + I Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQRVI 239 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y L +++ + ++ ++ + +Y + E R + Q++ P++ A+ + Sbjct: 240 RYALVKP----DEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F+ A+ G S DI LG+ SKE + A++ FSL G + V+H G+ Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DGAVSNVLHSPLGWH 354 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I HV I+ + +++ +I Q+ + S+ + R+++ ++ G +I+ +EK Sbjct: 355 IVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEK 414 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + + D + + L+ F D Y + Sbjct: 415 LEVVQTAPLRRDASDDQ--------IVKSLVTPAFESGKNSEPFVATITADKLYALAMVD 466 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 I + LE+V V D + + E+ A+ L L+ +K G F + G L Sbjct: 467 HVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGVPFAQLAAQAGVKLP 525 Query: 530 TTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVG 582 + + F + F V P + +++ K V++ Sbjct: 526 PVTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSK 585 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + MM D+ + + + + + Sbjct: 586 EAGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629 >gi|171058611|ref|YP_001790960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170776056|gb|ACB34195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 637 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 99/648 (15%), Positives = 237/648 (36%), Gaps = 48/648 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +R+ + +V+ FL+ G+ + + V ++ + + + + + Sbjct: 1 MFDFVRRH-NRLLQFGLALVIVPSFLVVGIQGYDQFSASNEAVANIDGRAITQTEWDAAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q++ + ++ V+++ S + +K+LD+LV + + + L R+ A Sbjct: 60 RQQVERVRAQMPG-VDAKLLDSPAIKQKVLDDLVRERVMLVAAQKLLLAPTDQRLQRLFA 118 Query: 121 RSPLF---HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P F D D L G+ +++ + + V G S Sbjct: 119 TDPQFASLRNADGSVRKD----LLEARGMTSEQFAQQLRQEFALRQVSLGLAGSALASPA 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAPEYKRISYI 235 + +A +F+ R V + + + S+A +++ +++PE + Y+ Sbjct: 175 VTARAMDSFFQQREVQVALFPAKDYLSKVSASDAEQQAYYDDPRNAAQFQSPETVSVEYV 234 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEA 283 + D+ I ++ D+L+ Y++N +Y P+ R ++ +++A Sbjct: 235 VLDLPAVTAGINVNEDDLRKYYDENAARYEQPQERRARHILVKLDADASDDAKAKAREKA 294 Query: 284 DEAFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 ++K F LA + G + L ++ + D++F L KKG+ Sbjct: 295 AALLAEVQKNRAAFADLARRQSDDPGSAAQGGDLDWIARGAMVKP-FEDAVFGL-KKGEL 352 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 ++ FG + V++ + +F V+ ++ ++R A ++ E ++ + Sbjct: 353 GGIVETEFGLHVIEVTDTRGGEKRAFANVRGELEAEVRKQLAQKRYAELAEQFTNLVEQE 412 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 ++ ++ K+ + G V A P + +F+ + V Sbjct: 413 DTLKPVADALKLELHKADKLGRVAPAQPGN-VLASPKVLEAIFQPESLSGKRNI-EPVEA 470 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 + ++ E PAR + L EV ++ + K A+ + + E+ Sbjct: 471 AANQLVAARVLEHAPARKQPLAEVGERLRNAVISEKAAKAAADDGKTKLAEWQ------- 523 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKV 576 K A L ++R + + + + V P + + + G Y V K+ Sbjct: 524 --SKPESAKLGAALVLSRTQAQGQ--PREVVDAVLRAPADKLPGWIGVELGGQGYAVIKL 579 Query: 577 TNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + ++ + Q+ ++ D+ L +Y V D Sbjct: 580 AKVLAADPAATGDPERVKAQYAQLWSQAESDAYYRALSKRYKAEVTDK 627 >gi|241761010|ref|ZP_04759099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374629|gb|EER64090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 642 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 109/644 (16%), Positives = 246/644 (38%), Gaps = 33/644 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53 M R+ ++ A + ++ + F+ G + S T+ +G++K+ Sbjct: 1 MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 S + +++ + Q+ + S G+ K I ++ ++ ++ ++ G+ Sbjct: 61 SEAYDYIRRDYLAVRQQNPSIDAMTFVASGGIGKAI-SGYIAAKSMSEWAKNNGIGVSQK 119 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 V GEIA P+F G + KF +F + LA++ + + + + R ++ V G++ Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 N + + R + + + + P+ P + + +++ + + Y PE + I Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQRVI 239 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y L +++ + ++ ++ + +Y + E R + Q++ P++ A+ + Sbjct: 240 RYALVKP----DEVKPTEVQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F+ A+ G S DI LG+ SKE + A++ FSL G + V+H G+ Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLG-DGAVSNVLHSPLGWH 354 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I HV I+ + +++ +I Q+ + S+ + R+++ ++ G +I+ +EK Sbjct: 355 IVHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEK 414 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + + D + + L+ F D Y + Sbjct: 415 LEVVQTAPLRRDASDDQ--------IVKSLVTPAFESGKNSEPFVATITADKLYALAMVD 466 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 I + LE+V V D + + E+ A+ L L+ +K G F + G L Sbjct: 467 HVIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDL-LKKAKSGVPFAQLAAQAGVKLP 525 Query: 530 TTNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVG 582 + + F + F V P + +++ K V++ Sbjct: 526 PVTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSK 585 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + MM D+ + + + + + Sbjct: 586 EAGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629 >gi|298368785|ref|ZP_06980103.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014 str. F0314] gi|298282788|gb|EFI24275.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014 str. F0314] Length = 610 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 105/633 (16%), Positives = 229/633 (36%), Gaps = 65/633 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+S + S +V VG QK+ + + ++ Sbjct: 12 AQILLGLIALTFVGFGVS--TVANPDSDYIVKVGNQKISDHDLNLAMQNIQASGGEQ--- 66 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 67 -----------PRDAVFQSLLQRAYLTQGAKQMGIAVSQEQIKQIIVDDPSFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + L + ++E ++++ ++ + G S++ Q R+V Sbjct: 116 QALLTQYLNQRRMSEDQFVEEIRDQFLFQNLQNLVQNGTIVSDVQAAQLVNIAQATRTVR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + N +A+L ++++ K +Y P+ +I + K +S+ EL Sbjct: 176 SVTFNPEAFAGQIKVDDAILQRYYDANKKDYIIPQAVKIELVALTTQALADKQTVSDAEL 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------------LKKGKKFIQLA 300 + ++K P R + ++FP ++A ++ K F LA Sbjct: 236 RQAFDK------LPPRREIAHILFPVAQDASAEERAAAKAEAEKVLAMVKAKPSDFPALA 289 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ K + +LG K+ ++ FS+ +KG+ + V+ ++GY I + NI Sbjct: 290 KQYSKDPASASNGGNLGFMPKDGGLGAEFENAAFSM-QKGEISNVVQTAYGYHIIKILNI 348 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + F++ K ++ ++++ KA+ ++L E + ++ K + +++ Sbjct: 349 QDKPV--FEQEKAELEKELKLKKAAAGFNAAKEKLGEAAFNNPN--SLAEAAKALGLEVK 404 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKESIPA 474 L D G AA ++L+ VF D K + + D + V++KE Sbjct: 405 LSDEWLTKANG---AAAGMPQELINAVFSDDVLKKKHNSEPITINDNTVWVVRVKEVREE 461 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R EV DV+ + + + KA + + GK ++ Sbjct: 462 RTAPFAEVKDDVRAAYLRSEAVKLAEKKARAALADL--------QAGKKTELQWSPVTKL 513 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---I 591 + P + + + GL V + P + Sbjct: 514 TAEQARQSMPPEAYSELAKARPSKDKPAYVMLQGLPAPVIVEVQAVTPPENVAQQIPAAK 573 Query: 592 SYLTQMMNKDLLDSVIAYL-----KSQYSVTVH 619 L Q ++++ YL + + ++ Sbjct: 574 QLLMQQQVNSTFNNLLRYLSKNIDRKEGGQKIN 606 >gi|332185866|ref|ZP_08387613.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17] gi|332014224|gb|EGI56282.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17] Length = 650 Score = 306 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 117/643 (18%), Positives = 237/643 (36%), Gaps = 22/643 (3%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFS 54 ML R+ + V I L V+ + F +S+ G STV VG KV Sbjct: 1 MLSFFRRIINSKAGVIVTFIVLGVIAIAFAAGDVSNIAGMAGGLTGSTVAKVGSAKVTVD 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + + E+ Q+ ++ + + G + +L V+G +L+QF +D G+ Sbjct: 61 DLRTAAQNEVAAYRQEQP-TLDMAQFIAAGGFEGVLQREVTGLSLEQFGKDQGMVVSRRL 119 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V G+IA P F G + +F ++ LA+ + + + + L + +G + Sbjct: 120 VDGQIASIPAFRGPNGQFDPALYQQLLAQRKMTDAQVRTDLQRTLFAQQLTVPTIGATQM 179 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 ++ + E R + + R V A PS+A + ++ + Y PE + + Y Sbjct: 180 ASQMALPYASLLLEKRQGEVGYIPTRLVNAGGAPSDADIQTFYSRNVQRYTLPERRVVRY 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 L + ++ E+ Y+ N +Y + + R V Q++ +Q A+ K G Sbjct: 240 ALVTPSAIAAQSAPTDAEIARYYQTNAARYAATQKRDVTQVIVADQAGANALATRAKGGA 299 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 + A G S + +++ + P ++AD++F A+ G I G G+V+A Sbjct: 300 SLAEAARAAGLEASVQKGVDKATYATQSAP--AVADAVFGAAQ-GAVVGPIRGPLGFVVA 356 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V + + + + +I ++ K + + E +E+ L+ + DE+ K+ Sbjct: 357 RVDAVTQVPGKTLAQARPEIVTELTKQKQTAALGEMRNAIEDSLSGNATFDEVIADRKLQ 416 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + P V G + ++ F +D + DG + V + + Sbjct: 417 AQATPAVTAQGAAPDAPAFQPSAEQRAMITAAFTAEDGDAPQIVPIGQDGGFAVVGVGQI 476 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + R L +V V D + AN ++ + +K G K G ++ Sbjct: 477 QRSAPRPLAQVRQQVIADLTADRARAAARKLANAVLAKVNK-GMPMAQALKETGLAVPPV 535 Query: 532 NQINRMDNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587 I + ++ +FS P K + + +VT G Sbjct: 536 RPIAASRRDLAAAQNTPAAAPLALLFSMPQNKAKTLEAPANEGWYIIRVTKIDAGNATGN 595 Query: 588 DKFISYLTQMMNKDLLDSVIA----YLKSQYSVTVHDNLIQRY 626 I Q + + + ++ ++ V + + Sbjct: 596 AAAIQAARQDIGRLIGREYVSQFARAVRDTVGVKTDPKAVAKV 638 >gi|225075250|ref|ZP_03718449.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens NRL30031/H210] gi|224953425|gb|EEG34634.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens NRL30031/H210] Length = 617 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 116/638 (18%), Positives = 234/638 (36%), Gaps = 59/638 (9%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S I +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 65 NAPS--------RDAIFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D+ L + + E ++++ + +++ + G S+ Q R++ Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+ Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQNVSAEEV 236 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGKK-FIQLA 300 Q Y+ K SP + + P + E D+ LK F +LA Sbjct: 237 QKAYDS-KSVDLSP-RAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELA 294 Query: 301 EEQGKSLS----DISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 + K LS +LG SK + F+L K G+ + + S GY + V Sbjct: 295 AKYSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVL 353 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSI 413 N++ + ++ K I +++ KA+ ++L E+ +S+ + + + Sbjct: 354 NVEAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAAANSGLKVE 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK--DHTVALPDGSYMWVQIKES 471 +L + A +P E L+ F D K +A+ + + ++ KE Sbjct: 412 NLDE----WVTKADAKEAGLP--ETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEV 465 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 + EV V+ + + A+ KA + + K Sbjct: 466 REEKIAPFAEVKDTVRAAYLRSEAAKLAEKKAQETLAALKAG--------KAADVQWSPV 517 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590 +Q++ D + + + V + + G+ V S P + Sbjct: 518 SQLSAQDARKTMSPEAYAALLKARSVGGKPAYVLLEGMPAPVIMEVQSVSAPENADSQIP 577 Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L Q ++ ++ DS++ YL + T + Sbjct: 578 AAKQALVQQLSANVFDSLLQYLGRKIDRTQGAQQVNNA 615 >gi|262370474|ref|ZP_06063800.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046] gi|262314816|gb|EEY95857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046] Length = 621 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 104/637 (16%), Positives = 219/637 (34%), Gaps = 37/637 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E RK + W+ K L++ P + G+ FS V SV Q + Sbjct: 1 MESFRKVIKGWLGKALLILFLTPLALVGIEGY-FSSGSKDAVKSVNGQDISEKELETLTA 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + K +D L++ L Q E +G+ ++ IA+ Sbjct: 60 SFKEQFLAYANG--DETLLNQSFIKDKAMDQLIANTLLLQQAEKLGISLSDTQIEQMIAQ 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 P F ++ KFS + S L G++ + + + + + FV S L + Q Sbjct: 118 QPSFQ-ENGKFSETRYSSYLQSVGMSSDALVANLRQDHALKMMRSTFVDYALVSKLDIQQ 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R+V + +N S + +++++ ++ + Y+L Sbjct: 177 IANLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDVDYVLLAPAN 236 Query: 242 KEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKK 292 +++ ELQ Y + E V+ ++ +K A+E +K Sbjct: 237 VPAAASPVTDAELQQAYTQFVEAQKDNVAPLVKHILITTDARTDAEAKKRAEEVVAKIKA 296 Query: 293 GKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F A + + + + G ++K D + ++ SL K G + + FGY Sbjct: 297 GTSFAAAAAQYSEDTASKANGGALAVYNKGTFGD-AFDQAVASL-KSGQVSAPVKTEFGY 354 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + ++ SF+ K + +++ K + + L E + ++D +S+ Sbjct: 355 HVIE-TDAPAVKLPSFENEKARLTAEVQKNKTANAFSDTVNSLNELVVDSDALDVVSQEV 413 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K V + V + + LF K+ + ++ LP+G +W ++ Sbjct: 414 KGVQV---QTVKGMTLSTQHPVLSNAAVKVKLFNDDVKNGDRNATSSIQLPNGDVVWAKV 470 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 ++ A + L+E VK K + +K Q + ++ + + G + Sbjct: 471 RDYHAAGVQTLQEATPRVKAKLVEQKAYDAAKAKIAQSLKDFKTQ--PAASVVAKSGLTF 528 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKVTNSK----- 580 R ++ FS + + VV V+N Sbjct: 529 TAPQVFIR----SQGLPRAVERAAFSQAAPKAGQWSVTTALLPTEMVVVAVSNVNKTTSS 584 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ + Q+ + + + YLK+ + Sbjct: 585 ALTDEQLAELSKLYQQLRGQQEAEDYVQYLKAHAKIK 621 >gi|21672727|ref|NP_660794.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008943|sp|Q8K987|PPID_BUCAP RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|21623371|gb|AAM68005.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 621 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 109/636 (17%), Positives = 251/636 (39%), Gaps = 33/636 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ ++ + K L ++ + + +G + F+ + + V +++ F + + Sbjct: 1 MIKYLKSRLNIIIVKCILGIIILSLV-FGTINNYFNRDTTRYIAKVNGEEISFITLQKMY 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + +G + ++ IL L++ L+Q+ + + + Sbjct: 60 IDERKKQEKILGQDFEKIKKNKKFKEETYNYILSQLINNILLEQYTKRMNFNIQDNEIKK 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P+F ++N+F+ +++ L+ + + EY+ K L+ T ++ + Sbjct: 120 IIFNIPIFQ-ENNEFNKKKYLNYLSSKNLTHYEYVSLIRKKLNTTYLINAISETDFILDN 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + E R + ++ + + + +F+++K+ + PE +ISYI Sbjct: 179 EQKKIIKLLSEKRIIKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKISYIQL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++ KI+ SN+E++ Y+KN +KY + E R + + EA LKKG+ F Sbjct: 239 KPNKF--KIQCSNEEIKNWYKKNIDKYSNQERRQYSIIQTKTKNEALSILSELKKGEDFS 296 Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 ++A+E+ ++G +K ++P+ I +L K + +I + ++I + Sbjct: 297 KIAKEKSIDPFSSEQGGNIGWITKNFVPN---EIKIANLEKIDQISNIIKFNNNFLIIKL 353 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + I P EV I N+++ K+ K+ ++ + +++ K +I Sbjct: 354 NKILPKKYKKISEVSDLIENEIKYQKSLNTYKKLKDKI--AIIAKKNINRFDLILKKTNI 411 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQIKES 471 ++ KD KE+ K+ + + K H+ + L D + IK Sbjct: 412 LPKETNWFDKDSVPKELQNPILKKIIFKKGLLDRQKKLKSHSGLIVLNDHQSFLLSIKNF 471 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531 R +KL+++ ++ K +K E+ +K +++ + K G I K Sbjct: 472 QKKRIKKLKDIKRNIVNKLKYIKAVEKTKNKLKKILFQL-KIGN--EHILKKENIIFEEY 528 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585 ++R D IS +F+ P V ++V+ + + Sbjct: 529 ETVSRYDK------NPNISVIFAMPHPKEEKNVYTMYQNKNKNFVIALLDKVYNEKFSNE 582 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 E+ I YL + + L + ++ + Sbjct: 583 EEKIIIKYLEKNNIDVTFQCFLQNLHRKATILYNKT 618 >gi|255067897|ref|ZP_05319752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC 29256] gi|255047885|gb|EET43349.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC 29256] Length = 616 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 117/626 (18%), Positives = 246/626 (39%), Gaps = 58/626 (9%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+S +V GS +V +G +K+ S N + E + + Sbjct: 12 AQILLGLIALTFVGFGVS--TVAVPGSDFIVKIGDEKISEYSLNNELQGE--QLQGQSPS 67 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +LV A L + + +G+E ++ I P FH ++ KFS Sbjct: 68 ------------RGAVFQSLVQRAYLKEGAKLMGVEVSQEQLKQLIVDDPNFHDQNGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 +F + L++ + E +++ + + ++ + G S+ +Q + R + Sbjct: 116 QQIFSNFLSQRHMTEDQFVADIRERYALQSLINLVQNGAIISDAQAEQLIKLTQATRDIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + N + +A L ++E +K +Y P+ ++ YI + K +S DE+ Sbjct: 176 SVTFNPEAFVSQVKVDDAALKAYYEAHKKDYLIPQGVKLEYIALSAKDLADKQAVSEDEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AFQSLKKGKKFIQLA 300 + +++ R + + FP ++ADE A + K F LA Sbjct: 236 KKAFDEQAPHLSP--RREIAHIFFPVPQDADETVRAAIKAEADKVAAELKAKPADFADLA 293 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ K + +LG SK+ L + FSL K G + V+ GY I V NI Sbjct: 294 KKYSKDTASASKGGNLGYLSKDGGLGTDLENVAFSLPKGG-ISDVVQTPVGYDIVQVLNI 352 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKIVSIDL 415 + S + K I +++ KA+ + ++L EE TS+ +++++ ++ L Sbjct: 353 EDKV--SLEHEKARIEADLKLKKAASEFNSVKEKLSEEAFNTPTSLADVAKK---TNLKL 407 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK-DHTVALPDGSYMWV-QIKESIP 473 +D + A +P + L+ F +D K + + D +WV ++KE Sbjct: 408 ESLDQDWLTQANGKAAGLP--DALINAAFSEDVLKKKHNSDLISMDKDTVWVIRVKEVRE 465 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + +V +V+ + + A+ KA + + GK + ++ Sbjct: 466 EKTAPFADVQEEVRLAYLRSEAAKLADKKAKEAIEAL--------KAGKAVDLKWSEVSK 517 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGP--VQEKDK 589 ++ D + + P + + E + V+ +V N + Sbjct: 518 LSAQDARRTMAPEAYNELIKARPQNGKPAYAMLLEGMPAPVIVEVQNIAAPENIASQVPA 577 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYS 615 L Q + ++ D+++ Y + Sbjct: 578 AKQMLAQQQSANIFDALLRYFSKEIK 603 >gi|254514389|ref|ZP_05126450.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR5-3] gi|219676632|gb|EED32997.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium NOR5-3] Length = 622 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 106/636 (16%), Positives = 244/636 (38%), Gaps = 33/636 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ VAK+ + ++ + F I+G+ LFS GS+ V V +++ + Sbjct: 1 MLQDIRANAQGTVAKVIIGLIVISFSIFGIESLLFS-GGSNGVAEVNGEEISPFALQQEL 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + +G + + ++ L+ L+ + Q +D+GL + + Sbjct: 60 SVQQRRLLSILGEDADPALLDQAQMSQQALETLIQREIIKQAAKDMGLNTSDQAIADIVG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F D +FS D+F LA G + + + + + G + LD Sbjct: 120 SMEQFQ-IDGQFSPDLFQGALASAGFTPALFRERLAEDVEIGQLRAGVAGSDFSTEAELD 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 A E R V YI L A + S+ + ++++ + +++ E + Y+ + Sbjct: 179 LAASIALEGRDVRYISLPLLDFIASVELSDEAVETFYQQNPERFQSEESVILEYLELGID 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEAD---EAFQSLKKGKK 295 K ++ + L+ E+E ++++ V ++ + A+ A ++L +G Sbjct: 239 AYRK--DVDEERLREEFELVRDEFELSAEARVSHILIEGSDADRAERIAAAQKALSEGMS 296 Query: 296 FIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F A E G + LG + + P+ ++ ++I +L G+ + + G + Sbjct: 297 FADAAAEFSDDIGSAQDGGDLGYTAGDTFPE-AMEEAIAALG-VGEQSAAVETEAGTHLL 354 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V++ + +VSF++V ++ ++++ A+ + D +RL + ++ + ++ Sbjct: 355 LVTDRREGSSVSFEDVAAELEDRIQSRDAAADLLVDVERLRDIAFNAADLNAPAEALELE 414 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIK 469 V + + + L F +D + + L ++ +++ Sbjct: 415 VQTSEPVSR-------NQQEGLFARPALRQAAFSEDVFEAGHNSEVIELNPEQFVLLRVA 467 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 E PA + LE+V ++ + + E +++A +L+ S+ G + G Sbjct: 468 ERRPAALKPLEDVRAAIEVELREQLAKEAAAAQAMELMAALSQ-GSTVEEAANAAGLQWQ 526 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG------- 582 R + + + P + I + + V ++V Sbjct: 527 VELGARRNSRSLPGVVRERLFAM-PAPEDGSPTREIVDEDPDATYLVELARVSSGNPADM 585 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 PVQE++ + L L+ + V V Sbjct: 586 PVQERELLRQRIAGETGGILQQQFETGLRERAEVIV 621 >gi|116619198|ref|YP_821354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] gi|116222360|gb|ABJ81069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] Length = 644 Score = 301 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 112/655 (17%), Positives = 240/655 (36%), Gaps = 45/655 (6%) Query: 1 MLEIIRKASR--TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFI 57 M ++ R + + L V+ + L + + + S S V +G+ + Sbjct: 1 MFDLFRSRDKMVRILLGALLGVVALSMLTYLVPNYNTGSSTSDVVVAEIGKDTITLPEMQ 60 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + G + +E +++D +V+ + E +G + V Sbjct: 61 RVIQATIR------GRQLPTEIL--PTYIPQMVDQMVTERAMAMEAERLGYQVSDADVAD 112 Query: 118 EIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I + D KF + + + LA++ + ++ + ++ + + + G + Sbjct: 113 SIRQMVPSLFPDGKFVGKETYAAMLAQQNMTIDQFEADLKRQVAISRFRDIAMEGTIVTP 172 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ A + E V+++ L + PS L +++ Y PE + ++ + Sbjct: 173 AEIEAAFKKKNEKIKVEWVKLTADKYKGESQPSAQELQDFYKANVSRYTVPEKRNLTVLT 232 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------KEADE 285 D + + I++ +LQ Y++NKE + +PE ++ Q + + Sbjct: 233 ADEAKMSASLNITDADLQRVYDQNKEAFRTPERVKARHILLKTQGKPASEEAAIKAKGES 292 Query: 286 AFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + +K G F +LA+E G +++ LG + +IF+L K G+ + + Sbjct: 293 LLKQIKAGGDFAKLAKENSEDPGSAVNGGDLGDWITHGQMVAEFDKAIFAL-KPGEVSDL 351 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-ALGTS 400 + +GY I + + +F EVK D+A Q + + SE +++ R + L Sbjct: 352 VKTQYGYHIVQTLAKQDAGMRTFAEVKGDLATQYKKQRVSELMQQASDRAQAALQKDPQH 411 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 ++++ + +P G + A L + + V Sbjct: 412 PEKVAAELNMQLAKVPNFAPGGAIGELPANADFDQSVANLKKGEVSQPVTVNNKVVVAVV 471 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + IP EEV ++ + A V AN+LV + G + Sbjct: 472 --------DDVIPGHPSTFEEVQGQIRDTIVANRAAAAVQRHANELVEKAKAMGGDLEKA 523 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 K++G + T+ ++R N I++ FS P V VV KV + Sbjct: 524 AKSMGLDVKTSGDVDRSGNIEGLGTASYIAEGFSRPDGTVYGPIGTPDGGTVVMKVISHT 583 Query: 581 VGPVQE--------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + +D+ S + N + V L Q + +H ++I R + Sbjct: 584 GADMAQLPAQRNAIRDEIKSQRARDRNTLFENGVKDMLIKQGKIKIHQDVINRLI 638 >gi|114799881|ref|YP_760495.1| peptidylprolyl cis-trans isomerase-like protein [Hyphomonas neptunium ATCC 15444] gi|114740055|gb|ABI78180.1| peptidylprolyl cis-trans isomerase, homolog [Hyphomonas neptunium ATCC 15444] Length = 637 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 108/629 (17%), Positives = 248/629 (39%), Gaps = 19/629 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFIN 58 ML +++K +R+ V K+ L+++ V WG+ + + + VVS G + + + Sbjct: 1 MLALMKKMTRSPVGKLVLMIVIVGMAFWGVDAIVNQMRSGLGANVVSAGSRGLDPADLDF 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + L I+ ++ A GL +I++ + T + E IG+ V E Sbjct: 61 RVETVLRNINATAERPLSKSEALEQGLIDQIVEVEKARITRLGYGESIGISPSPEAVVEE 120 Query: 119 IARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + P F + +F R+++ G++ ++ + + + + Sbjct: 121 MNSIPAFQNPLTGELDPAMFRDRISQLGMSPAQFERQLQDDILIRALSQAGRSAVYGPQV 180 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + E R V + + PA P++A + +++++ + + PE + + + Sbjct: 181 IANIQANYLGETREVAWFFFDASDAPAPEVPTDAEIKAYYDEHLERLKQPERRALDILRM 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + K+E+++ E+ YE K E++ +P+ RT +L+FP + A AF L G Sbjct: 241 STDDFTGKVEVTDQEVATVYEATKSERFAAPDQRTYAELLFPTRDAARTAFGLLAGGADP 300 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSFGYVIAHVSN 355 + + + + + E I D +L D++F + G +++A + + Sbjct: 301 NSV-----TGANSVQMRTARAEDISDQALQDAMFGPGRQSGAMYGPREVDGQWLVARLIS 355 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 ++P +EV ++I + +A + L+E LA G + +++ + I + Sbjct: 356 VQPGAVKPLEEVAEEIRLGLARERAQLLFSAALETLDEALAAGNDLSQVAEDIGVPIISI 415 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFG-KDDPLSKDHTVALPDGSYMWVQIKESIPA 474 VD G +G + + + L + F ++ + VA S + V + +PA Sbjct: 416 APVDQNGITEQGNQFTILSEVPEALPQAFRLPENEIGSRFDVA---SSVVLVAPRRIVPA 472 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQ 533 +L+ + V + +TA + L GA + Sbjct: 473 ATPELDAIKDRVSAMIVSERTANAAEAAVEALTERVRAGSVTLDAAAAESGAQVDRLPEP 532 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 ++R + + + F+ P V P +G + + K+ + + I+ Sbjct: 533 VSRSNAQAMGVPGPLMQATFNNPAGSVISLPTGDGSVFAILKILSVSPP----TPEMIAS 588 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + + D+ +S+ A L++ + + Sbjct: 589 MGTAASADVTESLTADLEAAVDDEIRRAV 617 >gi|14582889|gb|AAK69701.1|AF356511_1 putative peptidyl-prolyl cis-trans isomerase D [Anaplasma phagocytophilum] Length = 575 Score = 299 bits (766), Expect = 9e-79, Method: Composition-based stats. Identities = 111/573 (19%), Positives = 246/573 (42%), Gaps = 22/573 (3%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 +A + + FV F L + V +G + +P + ++ EL + + + Sbjct: 11 VMATVLGAMAFVTFGSMIPMGKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKML 70 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 ++ + G+ + +L N+++ +++F D+G+ + I +F + Sbjct: 71 QHKLSDAQINQFGIKEVVLKNMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGV 130 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NLLLDQAKRFY 186 F + + + LA G+ E Y++ L T ++ + L Sbjct: 131 FDQERYEAVLADSGMTESSYVNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGL 190 Query: 187 FENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFDVHEKEK 244 ++R D + +++ V + +D S+ L + FE+ YK++ PEY+ YI+ + Sbjct: 191 LQHRVADIVEISSDAVDISGSDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLA 250 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + +S+ E+ E + ++ + R V LVF ++ EA+ A+++ ++GK F +L + G Sbjct: 251 DVIVSDQEVDVEIKNSELH----DQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAG 306 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 ++ DI+L + SK+ +P V + + +F+L +G+ + + G+ I V Sbjct: 307 YTIEDIALNNISKDVLP-VGVRNVVFAL-NEGEVSEMFRSVVGWHIMKVIRKHEITKEDL 364 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VSIDLPLVDFAGK 423 +++K+ I++ +R KA E + + K+ + ++ G ++E+ +S L D G Sbjct: 365 EKLKEKISSNIRRQKAGELLVSNVKKANDMISRGALLNELKDMFGARISGVLTNFDMHGL 424 Query: 424 DVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 D G V P + + F + K + +Y V + E +P R R LEE Sbjct: 425 DKSGNLVKDFPLQLGINAFTTLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEES 484 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE-- 540 + + ++WK+ +++ A +L + + G + G S + + D Sbjct: 485 RSILTEEWKSALRMKKIREFAVELRSKL-QNGTELSVV---NGVSFKKNVTVKKSDGSTD 540 Query: 541 -NKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572 + + + ++F+ + V I++ V Sbjct: 541 NDSKYPERLVDEIFAINIGGVTKEVIDSESETV 573 >gi|260219734|emb|CBA26579.1| hypothetical protein Csp_E36670 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 587 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 81/469 (17%), Positives = 188/469 (40%), Gaps = 29/469 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +RK ++ + +FL ++ F++ G+ G +TV +VG K+ + + Sbjct: 1 MFDFVRKHTKVLMFLMFL-LIIPAFVLVGVDGYKSMAGGGATVATVGNAKITQEEWDFAH 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K E+ + + ++ + S L+ LV + + ++ + + R+ E+ Sbjct: 60 KNEVDRLRASVP-NLDPKLLDSAEARYTTLERLVREKVMAEAVQTAHMTTSNARLARELQ 118 Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++P D + + A +G+ + + + LS V G Sbjct: 119 QNPTIASLRKPDGTLDMERYRQLAASQGLTPEGFEARVRRDLSLMQVESAVTGTAFSPKA 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L D A +FE R V + + + +PS+A + +F+ +++ E + Y++ Sbjct: 179 LSDLALNAFFERREVQVLRFSPADYASKINPSDADIDAYFQANSALFQSTETANVEYVVL 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADE 285 D+ +K + ++ +L++ +E+N + + E R ++ K+ A Sbjct: 239 DLEAVKKTVSVNEADLKSYFEQNASRLSAKEERRASHILINAPKDMPAADRAKAKERATA 298 Query: 286 AFQSLKKGKK-FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++K F ++A++ + + L F + + D+ FS+ KKG+ + Sbjct: 299 LLAQVRKAPDSFAEVAKKNSQDVGSAPRGGDLDFFGRGAMVKP-FEDAAFSM-KKGEISD 356 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GT 399 ++ FG+ I ++++K + +F+E + + ++R A K E + + Sbjct: 357 LVESDFGFHIIKLADVKGAKQPTFEEARVSLEPELRAQSAQRKFAEVAEAFTNGVYEQSD 416 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 S+ ++ R K+ V +A +LL +F D Sbjct: 417 SLKPVAERLKLEVKTATNVQRQPLPGAAGPLA----NPKLLEAIFSTDS 461 >gi|153872856|ref|ZP_02001627.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS] gi|152070679|gb|EDN68374.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS] Length = 576 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 90/572 (15%), Positives = 209/572 (36%), Gaps = 43/572 (7%) Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + ++L +++ L Q + GL + I F D KFS + Sbjct: 1 MDTPEFRHRVLQDMIEEELLVQSAINNGLRISDAFLATRIQSFQAFQD-DGKFSPSQYEQ 59 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 L +G+ + + L + + ++ Q RF + RS+ Y+++ Sbjct: 60 VLRYQGMTPTAFEWEIRRSLLTDQIREGVLRSALVTDYDEQQRTRFDEQQRSISYLIIPK 119 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 ++A + ++++++ + Y+ E RI Y+ + +S + L+ Y++ Sbjct: 120 TRFDKAVTITDADIEKYYQEHLERYKTVEKVRIEYVELSKSDLANAEPLSEEMLKERYQE 179 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSL 307 K + +P ++ KEA + +K G+ +LA++ + Sbjct: 180 RKASFTTPGRWNARHILIEVGKEASVSDKEEAKQKVQDILAKIKAGESVEKLAKQFSDDI 239 Query: 308 S----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F + +++ S+ K GD + I FG+ I + +++P + Sbjct: 240 GSKNQGGDLGWFDSGTMVKP-FEEALKSM-KVGDISEPIKTRFGFHIIELVDVQPEKVLP 297 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAG 422 F++V++ + ++ +A +++ +++ + + D G Sbjct: 298 FEQVREQLEADLKNEQADSAFYGQVEQMANLAFENPDNLETLRGTLNLERKTTDWFDKTG 357 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESIPARDRKLE 480 K + +I +++ F + + + + + +++KE PA+ R ++ Sbjct: 358 GSQKNEP-DSILSHPKVIEIAFSDEVLKERFNSEPIEIAEQQMVVLRLKEHQPAKARPID 416 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 +V D+K K +T E + L+ + ++G ++ K + T + R DNE Sbjct: 417 DVKDDIKSALKQERTQAETEKLGSNLLDQIKQKGDP--NVVKEQALNWSTIQWVTRKDNE 474 Query: 541 NKFFGYDGISQVFSG--PVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKD-------- 588 + + Q F P E + N Y + V + K G V+ Sbjct: 475 PQ---RVIVEQAFKMGQPAENNAIYQGITLNNGDYALIAVLDIKDGVVETAKADTEVEKT 531 Query: 589 ---KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + Q + + ++ LK + Sbjct: 532 PDTEQQDKQQQAFGETEFNYFVSGLKVGAEIK 563 >gi|94263261|ref|ZP_01287077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] gi|93456344|gb|EAT06468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] Length = 630 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 106/645 (16%), Positives = 248/645 (38%), Gaps = 34/645 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML ++R+ +R+ + + + ++ + F+ W + G TV V + + F + Sbjct: 1 MLALLRRKARSPIVLVAIAIIILVFIFW--LPQMGGDGGPGTVAVVNEEPLSLREFQRRY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + L + G V+ + ++G+ +++L L+ L Q + GL A V EI Sbjct: 59 NETLSQYRDEFG-VIPPDLLEALGIREQVLQQLIQEQLLLQSAKKTGLPATSSEVQREIQ 117 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F + +F + + L ++ KE+ L R ++ VG + S+ + Sbjct: 118 SMGEFSDEAGRFDLERYRQTLTAARLSVKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVR 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + + Y+ L + PS L +F++ +Y +P R+ Y+LF Sbjct: 178 QRFHYDHDQVRLAYLRLAAADFKPASTPSAEELEAFFQENSQDYLSPPMVRLDYLLFTPE 237 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + I +E+ A YE N+E++ PE R ++ + +++ + Sbjct: 238 REPEAIA--EEEIVAYYEANREEFSLPEQRRARHILIRSADNDSPELRASRKEQLRAVLE 295 Query: 289 SLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + G F +L + + LG F ++ + + + ++ F+L + G+ + ++ F Sbjct: 296 RARAGHDFAELVALYSEDARAAGGDLGFFQRDEMVEP-IEEAAFAL-EPGEISDIVETRF 353 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + ++P+ + EV+ +IA++++ + ++ E + S++ + Sbjct: 354 GFHILKLDELQPARQLELAEVRDEIADRLQDEEIQDESFARAGEAYELVLSEGSLERGAA 413 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 V G + A + LL F +A D Y + Sbjct: 414 AAD------EQVHTTGLFARQNPPARLAPYAGLLETAFDL-GEGELSSIIAAGDDGYAIL 466 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +++ + L EV +V+ DW + + A++ L +G+ I + Sbjct: 467 HVRQRQEPQVPSLAEVKEEVQADWLASQARQAARRAADE-ALTALHDGRELAAIAADHAV 525 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQ 585 L + +R I E + + G + V ++ + G + Sbjct: 526 ELQESPWFSRATATAVDLPEALIETGLGLRGEEPLPAEVVAAGDHFYVPRLLERRPGDEE 585 Query: 586 E----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 D L + + ++++ + + + + + ++R+ Sbjct: 586 LFQRWADPIRRELLRAKQEAVIETWVGHQLKEADIRLTPGALERF 630 >gi|294083766|ref|YP_003550523.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663338|gb|ADE38439.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 620 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 125/639 (19%), Positives = 262/639 (41%), Gaps = 28/639 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59 ML+ +R +++ + K FLV L F +WG+ D + GS VS + + Sbjct: 1 MLQAMRSGAKSPIMKAFLVFLAGGFALWGVGDITTGLIGGSDKAVSASEESLSPREVALE 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ ++ A GL +I+ +L + +GL + Sbjct: 61 FERARRNYM----PNSSTGEALQTGLLSEIVGSLSRAVIFNAENNTLGLTVTRAMQRDAV 116 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A F + FS F+ LA GI+E EY+ L R + V G+ + Sbjct: 117 ANETNFQDEMGSFSEGRFMQTLASAGISEAEYLGRVDSALKRDQLTRALVAGVVSNKAAD 176 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 ++ + R V I PS+A L +F + K +Y AP + Sbjct: 177 TLLTKYELQQRVVKMQSF-AVDADNIGTPSDADLDTYFSENKSSYDAPTVRSARVGFISA 235 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 E ++IS D ++ + +++ +PE R V Q+VF + K+A+EA + +G+ F + Sbjct: 236 TLIEADVDISEDMIKDAFGTRIDEFSTPETRVVRQMVFEDAKKANEARARVDQGEDFNAV 295 Query: 300 AEEQGK-SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A + + +D+ LG+ +++ + D ++AD++F A T + FG I V +I Sbjct: 296 AADMLNWTDTDVMLGTVTRDGL-DGAIADAVFD-ASVNVVTGPVETLFGQHILIVDDITE 353 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + ++V+ +I +R +A + + E LE+ +A G S+DE + + + + Sbjct: 354 GGNATLEDVRDEITRTLRSEEAIDLLYERANLLEDEIASGASLDEALGKAGGKIVTINDI 413 Query: 419 DFAGKDVKGKEVAA---IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 D G D+ G+ + I + ++ ++ D A D + V + AR Sbjct: 414 DRNGLDIDGQPMVDDSEIAQESAIIEAIWTNDIGTLSVLQEASADI-FFMVDVTTETEAR 472 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 R L+EV KDWK V+ + + A+ + + +F +I + ++ Sbjct: 473 PRTLDEVKQRAIKDWKLVQAIKSARAAADAAIANPA----SFDNIAAS--------SKFR 520 Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVGPVQEKDKFIS- 592 R + + F+ ++ + ++ ++ + + +K ++ Sbjct: 521 RNGLGLDHEAARLIANTAFAQANGDFDVVETGTEAIAVMTSEIIEAEQSEIDDTNKMVAD 580 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 + + +D++ + L ++ + ++ +++ L G + Sbjct: 581 IMKNAITEDVISFMAIKLSQEHDLQINIEPVRQLLVGSQ 619 >gi|148555266|ref|YP_001262848.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1] gi|148500456|gb|ABQ68710.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1] Length = 676 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 114/638 (17%), Positives = 228/638 (35%), Gaps = 14/638 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFIN 58 M+ R+A +W+ L ++ V F+I G+ ++ S +TV + KV + + Sbjct: 32 MISFFRRALSSWIILGILALVLVAFIITGVESPGSIGGTSNGATVAKIDGGKVSTNDLLR 91 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + + ++ + + + G + + + L+ +D + ++ G + + Sbjct: 92 RVQNQFDALRRERPELDHKSFLAAGGF-EGVTNGLIDARAIDAWGKEQGFAIGKRLIDAQ 150 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 IA F G F V +RLA+ I+E+E L R ++ V L Sbjct: 151 IAGMDAFRGITGAFDETVMRNRLAQARISERELRADIAGELMRNQILTPAVALAPTPAKL 210 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 E R ++ P+ A + ++ + PE + + Y LF Sbjct: 211 ARPYATLLLEERIGQVGIIPLAAFIDPRQPTEAEIAAAYKANIAAFTRPEARVLRYALFG 270 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + E+ Y +N + Y + E+R + Q+V PN+ A + + G+ Sbjct: 271 AEQVAAAAAPTEAEIATYYRENADSYAAREMRGLTQVVTPNETLARSIAAAARGGQTLAA 330 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A + G S ++ S + + A G GSFG+ + V + Sbjct: 331 AAAKAGLEASTLTGQSKAAYGGSAGAAVADQAFAAAAGSVAGPAKGSFGWYVVKVDAVTA 390 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + E K +IA + KA E + E ++E+ +A G S E++ K+ ++ P + Sbjct: 391 TPGRPLAEAKPEIAALLTRQKAQEALSELAGKVEDAIADGASFAEVAANNKLTVVETPAL 450 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G+ + + A P LL F + D Y + + + IP Sbjct: 451 LAGGQPIDRPDWKAPPELGALLKSGFAGSPDDRPTVETVVADQQYALLGVAKVIPPTPLP 510 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L +V V +D T + AE + +++V + G + G +L Sbjct: 511 LAQVRPMVIRDIVTKRAAERAKAIGDKMVAAIDR-GVPLAKAIADSGVALPPARPARARQ 569 Query: 539 ------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592 ++ + + +F+ K P G + V + G + + + Sbjct: 570 IDIARAQQSGAQIPEPVRALFALQKGKAKLVPSAQGEALFVTVLDQVVPGDLAKAPGLVG 629 Query: 593 Y----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 L + +L D I + V + I Sbjct: 630 ATQEELARASKAELGDQFIRAVSLDVDVKRYPEAIAAA 667 >gi|114569954|ref|YP_756634.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10] gi|114340416|gb|ABI65696.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10] Length = 645 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 111/632 (17%), Positives = 249/632 (39%), Gaps = 24/632 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML R +++ +A I +V+L + F I VV VG +++ ++ Sbjct: 1 MLSNFRAFAQSPIALIIIVLLVLSFAIAMPGAGGIFTGSGDAVVVVGPERISQREMATAF 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +E+ + ++ V E AR G+ ++L ++ AT+ D+GL + E+A Sbjct: 61 NREVARLQEQNPD-VTREMAREEGIAYQVLQQQITMATMAARARDLGLAISDVAIVSEVA 119 Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F +F D + L R G+ E ++ L R+ ++ G + + Sbjct: 120 DVPAFQNPITERFDRDTMAAALQRSGVTEDQFARDIEGDLLRSQLMATLAGFSDVPDQIA 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-----YRAPEYKRISY 234 E R + +V++ I DP++ L + ++ + PEY+ I+ Sbjct: 180 ATRYLVAEEQRRMTGLVIDASTADEIEDPTDETLQTFIDETLGANGEPVFTRPEYRAITL 239 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + F + + + + + L+ Y+ + +P R+ QL +Q AD+A L Sbjct: 240 VRFQLDDFIRDVAVDEATLREVYDYEIATNQIGTPAYRSFTQLTVSDQAGADDAASRLAA 299 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 G+ +A E G + + IPD L +++F+++ G+ V G FG+ Sbjct: 300 GEAPSAVAAELGLDTPLVQT-DVQQFEIPDEGLGETVFAMS-AGEARAV-EGRFGWSAVI 356 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 ++ + + +F+E + + +A++ + + E A G S++ + Sbjct: 357 ITGAEEATQPAFEEERPRLQADAARAQATDDMYDAISAFETVRATGASLEVAAEESGTPL 416 Query: 413 IDLP--LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 V+ +D++ ++L F + + + + + + +++ E Sbjct: 417 EIFQPLAVNSIDEDLQFDGERYQALAPEILPAAFDHIEGFATN-LESYNETDFYTLRVDE 475 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 I +R +LEE+ + W++++ ++ ++A + + + G + + +G T Sbjct: 476 IIQSRPFELEEIREQAESRWRSIQVDTQLQARAEDALAQL-EAGSDMEIVSLMVGGRTET 534 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK- 589 + + R F + ++ F+ + + G Y+V V + Sbjct: 535 ST-LKR-GQTAGGFDRNAVALAFTTDPGAYEMIQVGEG-QYLVLTVNEIIPADIAAAPAA 591 Query: 590 ----FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + LT + D++ + YL Y +T Sbjct: 592 DLAGIETSLTTELGNDIVSATREYLIRDYGIT 623 >gi|326387876|ref|ZP_08209482.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM 19370] gi|326207922|gb|EGD58733.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM 19370] Length = 645 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 117/645 (18%), Positives = 240/645 (37%), Gaps = 21/645 (3%) Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSS 55 ML R ++ + +FLV++ + F +S G V +VG + Sbjct: 1 MLGFFRAIIKSRFGAVLGLVFLVLIVLAFAGADVSGLRTGNLFGGDDVATVGHTGISSRE 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + + Q+ + + S +++L L+ A + ++ + G+ + Sbjct: 61 LDKTVRAAFDGERQRTPTLTMKDFVTSQNALEEVLSGLIDRAAVQEWGQKNGIGVSDRLI 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F G D KFS V+ +A+ G+ +K+ + K L ++ G Sbjct: 121 DSEIAKLPAFQGPDGKFSQQVYNQLIAQRGLTDKQVREDIAKGLMGKLIMAGASEGAAMP 180 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 N + + E RS ++L ++ A ++ + +++ Y+ PE + I Y+ Sbjct: 181 NGVAQRYAELLKEKRSGGILMLPSQAFAPKAPATDQQVADFYKANIVRYQRPERRTIRYV 240 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L D + S+ ++Q Y+ N Y E R++ Q++ P+Q A L GK Sbjct: 241 LVDEAAIKNLGAPSDADIQKRYQANAALYAPNETRSITQVILPSQSAAQAFAADLAGGKT 300 Query: 296 FI---QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 ++D + + ++AD++FS A++G G+ G+ +A Sbjct: 301 IEAAAAAKGLAPAKIADRTHDQLVSDT--SKAVADAVFS-AQQGKLITPTKGALGWSVAR 357 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V IK + + + + +I + + + + R+ E GTS+ +I + + Sbjct: 358 VDAIKKNPGKTLDQARAEIVLALTAERHKAAMTDLAARIGEQAENGTSLTDIVKAYGLTI 417 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKES 471 V G + P + L+ F + + LP+G V + Sbjct: 418 QTTDPVQADGSNPAKPGDKLSPDVQGLVQAAFAMEHE-GQPQVAGLPNGLRFAVFDVGAI 476 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL--L 529 PA L E+ V DW + A ++ A++++ +K+ K+LG L + Sbjct: 477 TPAAPAALAEIKAQVAADWARAQGAAAAAAAADKVLAAVAKK-TPLDVAVKSLGLPLPPI 535 Query: 530 TTNQINRMDNENKFFGYDGISQV-FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 + R + FS K N ++V + N + G V D Sbjct: 536 DKVAMTREQLTQMQPRVPAPYALMFSMTKGSAKKLAAPNQAGWLVIALDNVENGTVAPND 595 Query: 589 KFISYLTQMMNKDLLDSVIAYLKS----QYSVTVHDNLIQRYLDG 629 I+ + + L++ + ++ ++ + Sbjct: 596 PLIAQAAGQLGQVAGREYADELRTAITHEIGSKRNEATLRTVREA 640 >gi|296112838|ref|YP_003626776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis RH4] gi|295920532|gb|ADG60883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis RH4] gi|326561505|gb|EGE11849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis 46P47B1] gi|326567538|gb|EGE17653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis BC1] gi|326571415|gb|EGE21430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis BC7] Length = 617 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 218/635 (34%), Gaps = 34/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E +R ++W ++ LV +P G+ + ++ VG Q V ++F Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E + ++ V++ L + IL L A L+ +G+ + + Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298 + E+ A+Y + + R + Q++ A + L G+ F Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295 Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ S + +GSF+ + + + S G + + FGY I V+ Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + T + ++ + ++ K + + ++ G + +I++ + Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + P F F D + +WVQ Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANI 519 Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588 N ++ +F S V E G S +V V N ++ Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + ++ + + D L+ + YL+ + ++ + + Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614 >gi|326576612|gb|EGE26519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis 101P30B1] Length = 617 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 218/635 (34%), Gaps = 34/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E +R ++W ++ LV +P G+ + ++ VG Q V ++F Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E + ++ V++ L + IL L A L+ +G+ + + Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298 + E+ A+Y + + R + Q++ A + L G+ F Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295 Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ S + +GSF+ + + + S G + + FGY I V+ Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + T + ++ + ++ K + + ++ G + +I++ + Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + P F F D + +WVQ Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMNTSANI 519 Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588 N ++ +F S V E G S +V V N ++ Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + ++ + + D L+ + YL+ + ++ + + Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614 >gi|326566698|gb|EGE16837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis 103P14B1] Length = 617 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 217/635 (34%), Gaps = 34/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E +R ++W ++ LV +P G+ + ++ VG Q V ++F Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E + ++ V++ L + IL L A L+ +G+ + + Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298 + E+ A+Y + + R + Q++ A + L G+ F Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295 Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ S + +GSF+ + + + S G + + FGY I V+ Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + T + ++ + ++ K + + ++ G + +I++ + Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + P F F D + +WVQ Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMNTSANI 519 Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588 N ++ +F S V E G S +V V N ++ Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 ++ + + D L+ + YL+ + ++ + + Sbjct: 580 HAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614 >gi|326577521|gb|EGE27401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis O35E] Length = 617 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 217/635 (34%), Gaps = 34/635 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E +R ++W ++ LV +P G+ + ++ VG Q V ++F Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E + ++ V++ L + IL L A L+ +G+ + + Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNV 236 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQ 298 + E+ A+Y + + R + Q++ A + L G+ F Sbjct: 237 LSVG-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295 Query: 299 LAEEQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ S + +GSF+ + + + S G + + FGY I V+ Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + T + ++ + ++ K + + ++ G + +I++ + Sbjct: 356 KA-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + P F F D + +WVQ Sbjct: 415 IIAYPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAE 468 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 R +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANI 519 Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588 N ++ +F S V E G S +V V N ++ Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + ++ + + D L+ + YL+ + ++ + + Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDAL 614 >gi|256823166|ref|YP_003147129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis DSM 16069] gi|256796705|gb|ACV27361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis DSM 16069] Length = 624 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 100/622 (16%), Positives = 225/622 (36%), Gaps = 47/622 (7%) Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88 G V V ++ + + + +E ++ + L ++ Sbjct: 16 GYFTGTLFSGNPDKVAEVEGAEITNAQIQQRVDNVRRQMGDQFEQQYATEASQQL-LRQQ 74 Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148 I + L+S L + GL A ++ P F +S D LA++G +E Sbjct: 75 IKEQLISEQVLRANLTKAGLTASEQQIKAWAREFPAFQ-IGGVYSADQAKMILAQQGWSE 133 Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 + + + +++ + N ++ + + R V Y+ + D Sbjct: 134 ERFRQFARQQIAQEQLEQGVGASNFALNFEVEAYYQLQEQTRDVGYVRVAREAFSDSVDV 193 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK--IEISNDELQAEYEKNKEKYFS 266 S++ + +++E+ + + PE + Y+ + E + ++SN+++ + YE+NK Y Sbjct: 194 SDSEVKEYYEQNQTQFEQPEMVNLRYVRLSLTELSQDLMADVSNEQITSFYEQNKANYQD 253 Query: 267 PEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS------- 314 P V ++ + Q +A +++G F +LA+E G Sbjct: 254 PAEILVAHILIDSSVEDAQSKAQSLLSDIEQGADFAELAKEHSSDTFSGENGGQLDWVDA 313 Query: 315 --------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 ++P+ + +L GD T ++ FGY I + + K + + Sbjct: 314 VPTSDDNPTGTGWVPE--FEAAALALENVGDVTDLVESQFGYHIIKLVDKKAADVSPLEN 371 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDV 425 V+ +I Q+ + +A + E L E L G +++ + + ++ ++ KD Sbjct: 372 VQDEIRQQLALEQAQKIFFEKQAILNEKLFEYGDDLEKFAEQVEL---EIQETGLFSKD- 427 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 +A P + F + D + L +++ +K+ P++ + LEEV Sbjct: 428 SATGIADNPVFLEKAFSASILESTEVSD-MIELSQDDIVYLTVKDYQPSQVQPLEEVKQI 486 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 V K K AE + A Q++ E + G + + S + + Sbjct: 487 VVDTLKEEKIAEATKAYAEQVLAEL-EAGGSAEQLLATKELSWTESEALK---ARGSSVQ 542 Query: 546 YDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLT 595 +D + +F+ P+ NG Y V +V + + + L Sbjct: 543 FDLSNAIFALQPPKEGEVIRAVEPLFNGD-YAVIEVQAVQYPDPSTMDEATRKQIAQRLA 601 Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617 + + L ++ + + ++ Sbjct: 602 NVNAQAELQGLMKTFREKSEIS 623 >gi|326565373|gb|EGE15551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis 12P80B1] Length = 614 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 103/632 (16%), Positives = 216/632 (34%), Gaps = 34/632 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R ++W ++ LV +P G+ + ++ VG Q V ++F E Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHTIQPNELIKVGNQVVDVATFQAEVNAER 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + ++ V++ L + IL L A L+ +G+ + + + Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301 + E+ A+Y + + R + Q++ A + L G+ F LA+ Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295 Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S + +GSF+ + + + S G + + FGY I V+ + Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + T + ++ + ++ K + + ++ G + +I++ + + Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 P F F D + +WVQ R Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAERPL 468 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519 Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591 N ++ +F S V E G S +V V N ++ + + Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + + D L+ + YL+ + ++ + + Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611 >gi|326561079|gb|EGE11444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis 7169] Length = 614 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 103/632 (16%), Positives = 217/632 (34%), Gaps = 34/632 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R ++W ++ LV +P G+ + ++ VG Q V ++F E Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + ++ V++ L + IL L A L+ +G+ + + + Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301 + E+ A+Y + + R + Q++ A + L G+ F LA+ Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295 Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S + +GSF+ + + + + S G + + FGY I V+ + Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAASVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + T + ++ + ++ K + + ++ G + +I++ + + Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 P F F D + +WVQ R Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYKAERPL 468 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519 Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591 N ++ +F S V E G S +V V N ++ + + Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + + D L+ + YL+ + ++ + + Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611 >gi|326575303|gb|EGE25231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis CO72] Length = 614 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 103/632 (16%), Positives = 216/632 (34%), Gaps = 34/632 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R ++W ++ LV +P G+ + ++ VG Q V ++F E Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + ++ V++ L + IL L A L+ +G+ + + + Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301 + E+ A+Y + + R + Q++ A + L G+ F LA+ Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295 Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S + +GSF+ + + + S G + + FGY I V+ + Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + T + ++ + ++ K + + ++ G + +I++ + + Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 P F F D + +WVQ R Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAERPL 468 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519 Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591 N ++ +F S V E G S +V V N ++ + + Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + + D L+ + YL+ + ++ + + Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611 >gi|326569386|gb|EGE19446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis BC8] Length = 614 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 103/632 (16%), Positives = 215/632 (34%), Gaps = 34/632 (5%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R ++W ++ LV +P G+ + ++ VG Q V ++F E Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + ++ V++ L + IL L A L+ +G+ + + + Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 FH + +FS+D F + L + G+ + LS ++ VG N + + Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 E R V + + S+A + +F++++D P +SYI D + Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSV 236 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---ADEAFQSLKKGKKFIQLAE 301 + E+ A+Y + + R + Q++ A + L G+ F LA+ Sbjct: 237 G-TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295 Query: 302 EQGKSLSDIS---LGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S + +GSF+ + + + S G + + FGY I V+ + Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVERALSGLSVGQISQPVQTGFGYHIFKVTKV- 354 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + T + ++ + ++ K + + ++ G + +I++ + + Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 P F F D + +WVQ R Sbjct: 415 YPQT----NNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKN--VWVQPTNYEAERPL 468 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +E +K+ K E + A ++ E G A + T+ I Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519 Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591 N ++ +F S V E G S +V V N ++ + Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLHAV 579 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + + D L+ + YL+ + ++ + + Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDAL 611 >gi|254294057|ref|YP_003060080.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814] gi|254042588|gb|ACT59383.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814] Length = 634 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 100/633 (15%), Positives = 238/633 (37%), Gaps = 12/633 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML I+R+ R+ + + + +L V GL D +FS S ++S G + + N Sbjct: 1 MLSIVRRMVRSKLMLVVIGLLIVGLAGMGLPD-MFSSSEPRGMISAGDRFIVKRDIDNRI 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 L + + G ++ + A G+ ++IL ++ S L F + + A V + Sbjct: 60 DTYLRSVRESEGRTISRQEAAKAGVIQQILQSVASETALLAFADKEKISASRYAVTDMVV 119 Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P F +F F +G++ ++ + + +R + G+ + L Sbjct: 120 NAPRFKNAVTGEFDDASFKDFARLQGLSVRQLETNLKESFTREYIADAVSTGVNTPDALG 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 E R Y+ + N P++ + ++E+ K + P+ K +S + Sbjct: 180 KVWITSQSEQREFSYVKIPNDVSDEGILPTDEEVAAFYEENKTAFTQPKRKALSILSISP 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +EI L+ EY+ +++ SPE R +++ +++ +A + G + Sbjct: 240 IDFIGSVEIPETVLKDEYDLRIKEFSSPESREIKEFSSSDRRLVQQAVDEIGAGGDVETV 299 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + + +++ I D A + F + + F G + A+V I P Sbjct: 300 LSSLPDLVVTTKI--VTRDQISDEEYAKTAFIVPEDTHFGVFELGEGNWTGAYVDTIYPG 357 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 F+ V I ++ A + + + + +F+ G +++E + + + +D Sbjct: 358 TPKPFETVSDQIFTELATVAAEQIFERKQEEMFDFVGGGFNLEEAADALGVPLMKYSAID 417 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 G+ +G + I ++ + + D + + +++ +L Sbjct: 418 AQGRTEEGHLLGGIVFRPDAMETIQSLDFEDEMSEILDDANNGIYVIRLDTVEEGFIPEL 477 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMD 538 +V + + +K + ++ AN L L+ +K + + LG + +NR + Sbjct: 478 ADVKSLATESYKIYQASQASEKLANDL-LDRAKALDDLSEAASELGLDYVKPEQNLNRRE 536 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YL 594 Q+ ++G S V + N + + S + Sbjct: 537 APEGVT-RSMAYQLLGAKAGDYVVASEQDG-SKTVLHLENVSNLEPEMLETLASSGKRAV 594 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 ++ + D+ + + + + V++N + Y+ Sbjct: 595 SESLEADIQRAFVEAVMEDAKIEVNNNAVSEYI 627 >gi|90021259|ref|YP_527086.1| peptidase M20D, amidohydrolase [Saccharophagus degradans 2-40] gi|89950859|gb|ABD80874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus degradans 2-40] Length = 621 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 108/632 (17%), Positives = 227/632 (35%), Gaps = 27/632 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +R + V +V++ + ++ G+ + G + V SVG + V + Sbjct: 1 MLQNVRDNLKNKVVFGIVVLVMLIMVVGGVGSVNLNSIGGNDVASVGGEGVSAVELGRAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + G S+ + L ++IL LV L E+ G+ A V I Sbjct: 61 AMRKDQLLAN-GVDPTSDFVKEQNLRQQILPQLVRRKALLVTAEEAGVGAAVAEVEKTIL 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F KF + + G Y + + + S+ ++ Sbjct: 120 GQETFK-VGGKFDPQTYRRLIGNAGYLPATYKVAVAEDIILSHQSSGLADSAFVSDEEIN 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + RS I + V + + +++ + + PE + YI V Sbjct: 179 ALVAILNQKRSFFGITIPKETVGDEVTVTPEQIEAYYQANQQEFSVPEKVSVDYIEISVA 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKF 296 E K I + +++A+YE+ K + + ++ + E+ +E L G+ F Sbjct: 239 EIAKTIAVDEADIKAQYEQEKADFVESSEYEIAHILIADGDESASKIEEVQTQLAAGEAF 298 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LAE SLG + P+ ++++L ++G+ + + G Sbjct: 299 ETLAETYSDDFGSRETGGSLGVLTTGIFPE-EFEQAVYAL-EEGEVSEPVTTDAGTHFIK 356 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V++ K S++E K +I ++ +A + Y LEE + + + + Sbjct: 357 VTSKKVEALASYEERKPEIKKAIQNLRAESFYVDQYAELEELTFNAGDLTVAADQLGLTV 416 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKE 470 PL + + KEV ++ F +D LS + + + M ++ + Sbjct: 417 KQSPLFERNFGNGVAKEV-------KVRNAAFSEDVLLSGRNSPVIEISNSKAMVLRKRT 469 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P LE V + +++ + +++ A + E + GK+ +++ ++LG + Sbjct: 470 HNPEHIAALELVSSQIQQKLQAQAVQAKLAELAKNIQSEIA-AGKSPKEVAESLGYDIAE 528 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQ 585 + RMD + Q+ +G V G + V+ +T + G Q Sbjct: 529 HELVKRMDVTADAQMLRAVFQMAAGSGATVFEDIEAQGGNRVLLGLTAVQPGKVEDMTEQ 588 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 E+ + L + + + S+ V Sbjct: 589 ERAALSTQLLRENANLEIAAYEEAAISKVKVK 620 >gi|329119300|ref|ZP_08247987.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC BAA-1200] gi|327464647|gb|EGF10945.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC BAA-1200] Length = 603 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 106/630 (16%), Positives = 236/630 (37%), Gaps = 57/630 (9%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 AKI L ++ + F+ +G + +GS +V VG +K+ + + +++ Sbjct: 12 AKIMLGLIALTFVGFGAGGII--ATGSDYIVKVGGEKISTQNVQEAQREQ---------- 59 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++G + L L A L + + +G+ ++ I P FH ++ +FS Sbjct: 60 --------NLGSGQDALAYLTERAYLAEGAKMMGIGVSEAQLKQVIVDDPGFHDENGRFS 111 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 F L + G+ E+ ++++ + ++V + GG S+ +Q +R + Sbjct: 112 EAKFRLFLQQGGLTEERFLENLRNSFALQNLVNLAGGGNIVSSAQAEQYAALMLADREIR 171 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 I L+ + A +A L +++K K YR P+ + YI + ++ DEL Sbjct: 172 SIALDPKTFAAQIKADDAALKAYYDKDKSKYRLPQAVKYQYIELSPRTLAESQKVGEDEL 231 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQ-------KEADEAFQSLKKG-KKFIQLAEEQGK 305 + +E+ ++ + R V ++ + EA++ K +KF +LA + + Sbjct: 232 KKAFEEQQK--NAAPTREVAHIMLKTEGDAAKTKAEAEKILAEAKAAPEKFAELAAKYSQ 289 Query: 306 SLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 SLG+ K+ + ++ +L + GD ++ G + I V N++ Sbjct: 290 DAGTAQTGGSLGAVGKDSPLPEAFKTAVSALGQ-GDI-ALVEGEGAFHIVRVGNVRSG-- 345 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDF 420 +SF+E K + ++ KA E V + L + S+ + + D Sbjct: 346 LSFEEAKPALEAALKEKKAREAVAKTRDTLRQIAFEKPESLQPAAEATGLTVRD----SA 401 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKL 479 + + + +P + + +FG D K ++ + G WV + ++ Sbjct: 402 DWLSRENAQQSGLPA--EAVEALFGDDVFKKKHNSDLITAGDTSWVLRATDTRAESVPAF 459 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 E+ V+ + + A+ ++ +L+ E K G + + D Sbjct: 460 EKAKEQVRAAYLNSEAAKAAEAQGKKLLAELQKGGTP--------QLEWSSVETLTAADA 511 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKDKFISYLTQ 596 + + + P + + + GL V + ++ + L + Sbjct: 512 RLRLPPQALSALAKARPAQGKPAYVLLEGLPAPVLVEVRSIKVPQTSAEDGKLIRTRLAE 571 Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + + AYLK + + Sbjct: 572 HTAIGMYNGLTAYLKGKIPAEQGKQKLDGA 601 >gi|332970309|gb|EGK09301.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330] Length = 610 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 108/630 (17%), Positives = 240/630 (38%), Gaps = 54/630 (8%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L + + F+ +GL++ S + +V VG Q + + + + S++ G Sbjct: 12 AQLLLGAIGISFIGFGLANFDISTD-KNYIVRVGDQYITRDALEIAIRN-----SEQSGG 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 V + ++ L++ A L + + +G+ ++ + +P FH + KF Sbjct: 66 VAD---------RNQVFQILLNRAYLQEGAKRLGIVVSDAQIKQAVVDTPEFHDANGKFD 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 F + L + ++E++++ + L+ T ++ G S+ Q F R++ Sbjct: 117 PAKFQAFLQQTHLSEEQFMAQERERLTLTVLLNTLNQG-TVSDEQAMQFVNARFAERTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 V N + +A L ++++ K Y + + YI+ + K +S+ E+ Sbjct: 176 TSVFNPENYAKDVKIDDASLQKFYDANKQTYALQQGVKYDYIVLSPKDLLDKQTVSDAEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-------------KKFIQLA 300 QA + + + R + ++ K ADEA +S K +KF LA Sbjct: 236 QAALKD--AQANAKPTRKIAHILIEAPKSADEATRSKAKAQAEQVAKEAQAAPEKFADLA 293 Query: 301 EEQ----GKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 ++ G + S LG+F+K+ +P +L ++ F L + G+ + V+ FGY I V++ Sbjct: 294 KQYSQDAGSAQSGGELGNFAKDGSLPAPALEEAAFKLGE-GEVSGVVETDFGYHIVRVTD 352 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+ + E + +++ KA + + L E + S ++++ + + Sbjct: 353 IQAIDVAALTE---RVRRELQEKKAQQAYNKMRDELSEAVF--ASNNDLAAAASKFGLTV 407 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 E+ + + + DG+ +V+ E+ A Sbjct: 408 QKQGEWLTRANAAELKVPTAVVDA--ALSDEIFSKKQTSDAISADGATWFVRPTETRAAG 465 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 L V V+ DW ++ A + V K G+ + + ++ Sbjct: 466 TEPLANVRERVQADWVRSESVRLAREAAQKAVEALRK--------GETPTLAWMPEQKVV 517 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEKDKFISY 593 M + D + + P F + G+ +V + + + + + + Sbjct: 518 PMQVQALILPQDYAQFIAAQPKNGKPAFAVVERGGMVELVEVKSIATLNDPKILNAIKAE 577 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + Q+ L ++ I L++Q I Sbjct: 578 IAQVRGSALAEAYIDGLRAQVPTEQGSQKI 607 >gi|289811437|ref|ZP_06542066.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 408 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 181/421 (42%), Gaps = 23/421 (5%) Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++++ K + PE R+SYI D + +S+ ++QA Y+++ +++ PE Sbjct: 1 SYYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSI 58 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIF 330 + + +A +L KG+ F LA+E+ + + +G + L ++ Sbjct: 59 IQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV-PELKNA-- 115 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 L +KG + VI S G+++A + +I+P+ EV+ DIA +++ KA + ++ Sbjct: 116 GLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQK 175 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDP 449 + + A + ++ E++ + + +D +E+ P + + + G++ Sbjct: 176 VSD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGT 233 Query: 450 LSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 + + DG V++ E P + L EV V K K ++ A +L++ Sbjct: 234 PGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLV 293 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568 E K GK + K G S ++R + + S P + + + N Sbjct: 294 EL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPTKDKPVYGVAND 347 Query: 569 L--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + V+ K G P +K + +TQ + + +++++ L+ + + + D L Q Sbjct: 348 MQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQ 407 Query: 625 R 625 + Sbjct: 408 Q 408 >gi|119503317|ref|ZP_01625401.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium HTCC2080] gi|119460963|gb|EAW42054.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium HTCC2080] Length = 624 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 97/638 (15%), Positives = 217/638 (34%), Gaps = 39/638 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR ++ KI + ++ + F +GL +F SG+S V V ++ + Sbjct: 1 MMQSIRAGTQNTGFKILIFLIILSFAGFGLEQVIFGSSGTS-VAEVNGTEITPQELQVAI 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q G ++ E + + L+ L+ L Q + + A + + Sbjct: 60 EGQKRQLMQIFGDNIDPEMLDDDRIRPRALEELIERTLLLQAATENAMVASSRAIGEIVG 119 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +F D F D + LA G + + T+ + + + + + L Sbjct: 120 SIDVFK-VDGAFDADQYKVVLANAGYTPERFRREQTQQIILSQLQQGVLASDFVTTAELV 178 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 A E R V Y+++ + + + A+ S + Q +++ + + YIL Sbjct: 179 AAAEATAEERDVRYLIVTDEALRSSAEVSADSVRQVYDRDPSLWTSDATVIADYILISRD 238 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---------DEAFQSLK 291 + + LQ +++ +++Y E + ++ + D+A + Sbjct: 239 DFLAP--VDQVALQEQFDSIQDEYTVAEQTLIAHILLIQGDDESVEAYTRRVDDAASRIA 296 Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 + F LA E + +LG F+ + ++ ++ SLA G+ + + G Sbjct: 297 ADEDFADLAAELSDDVGSAALGGELGFTDGTVFPEAMESAVNSLA-VGEVSAGVKTDAGT 355 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + T ++++K ++ M+ +A + + L E + + Sbjct: 356 HFIRILERVAGETPDYEQLKNELEKSMQEAEADQTLLVTVDELRELSFNAADLQQPGGAL 415 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP---LSKDHTVALPDGSYMW 465 + V D + E+ + V D+ + V L ++ Sbjct: 416 SLSVSQSSPVSLTSGDGV--------FSERAVREVLFSDEVYLEGNNSAIVELSGNRFVV 467 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V++ E A EV ++ D + + L EG+ +I G Sbjct: 468 VRVAEKRAAEILPFSEVAKTIRADLEQSAELAAKLALLESLRSRR-NEGERLEEIATAEG 526 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 R+ + + ++ FS M ++ + V + V P Q Sbjct: 527 YEWRVELGARRVGS---LLPAEVVTLAFSMQYGMDAELESTQLVNGDLAIVELAGVEPGQ 583 Query: 586 -------EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 EK + L Q+ + + L+ + Sbjct: 584 LENLSLGEKGAMSAQLIQLQGQLSMLEYRTALRDNAEI 621 >gi|78222137|ref|YP_383884.1| hypothetical protein Gmet_0917 [Geobacter metallireducens GS-15] gi|78193392|gb|ABB31159.1| conserved hypothetical protein [Geobacter metallireducens GS-15] Length = 549 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 103/532 (19%), Positives = 207/532 (38%), Gaps = 37/532 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ V K+ ++ + F+ +WG D ++ SS V V R KV + Sbjct: 22 MLGIMRKYKQSIVIKVVFGLIVLSFIGTIFLVWGKGD--GGLTPSSYAVKVDRTKVSYEE 79 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + +Q G + E + + L K+ LD+L+ A L + +D+G++ V Sbjct: 80 FQRTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSEEEV 139 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA P F K+ F + + L + KE+ L ++ + Sbjct: 140 QKAIAAIPAFQ-KNGAFDSAQYFAVLKANRLAPKEFEAGQKDELMVKKAQDQIKAKVQVT 198 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + Q + + ++ + + + S+ LT + K ++ ++ PE +SY+ Sbjct: 199 DDAARQLYKKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQISVSYV 258 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-----------SPEIRTVEQLVFPNQKEAD 284 L D + K+E++ ++Q+ Y+KN ++Y +++ Q + QK + Sbjct: 259 LADPAKLAGKVEVTEADIQSWYQKNIDRYQGKGGILPLAEVKEQVKADAQRFYAGQKAYE 318 Query: 285 EAFQSLKKGK---KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI---FSLAKKGDF 338 A S+ K K +A E G ++S+ L +K P ++ + L K+ + Sbjct: 319 LAAASVNKHKTAGDLAAVARELGVAVSETPL-FTAKAPAPALAGEKEVLTRAFLLKQNEL 377 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + G I + KPS +++ + + + +A E K+ + + LA G Sbjct: 378 GGPVETPKGIYILKLKERKPSDVPPLAQIRAKVEERAKAVRAVELAKKKAEEAQAKLAKG 437 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 + + L D KG V I +L+ F D Sbjct: 438 DT----------AGLKLQETGSFAFDAKGN-VPVIGTSPELMEAAFTLTDKAPAPQAPVK 486 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 ++ ++KE +K++ K EE+ +L + Sbjct: 487 IGNRWVAFRLKERTELNAAAFPAEKEKIKQELLPKKQEEELQKWLKELRAKA 538 >gi|121997400|ref|YP_001002187.1| hypothetical protein Hhal_0599 [Halorhodospira halophila SL1] gi|121588805|gb|ABM61385.1| conserved hypothetical protein [Halorhodospira halophila SL1] Length = 524 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 81/490 (16%), Positives = 178/490 (36%), Gaps = 34/490 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR + W+A + + + +PF+ G + + V V +++P S + Sbjct: 1 MLQAIRDGIKGWIAWVIIGFIALPFIFMGGYEYFGGGQDDAVVARVDGEEIPRSQIDQAV 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ + + G + L ++ L+ L+ L ++ GL V I Sbjct: 61 ERQRAQLREMFGGDLPDGAFDGAALRREALEQLIDEQLLHAYVGKQGLRVTDQEVAQTIR 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +FH + +FS + + L R + ++Y + L + L+ Sbjct: 121 GQEIFH-EGGQFSRARYQTLLERNRLTPEDYEGLVRRDLKADQFQQAVFASSISTPSQLE 179 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R E+RS Y+ ++ +A + +E + D+Y APE R+ Y+ Sbjct: 180 RLVRLQDESRSFSYVEIDADRYTDEVSVDDAEVEAHYEAHTDDYMAPEAVRLEYVELGPL 239 Query: 241 EKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++++ ++ LQ Y++ + P V + + + + ++ G + + Sbjct: 240 ALRDQVDVDDETLQERYDERYGDDDDPPTFDDVREELLADSIREQYRTELIEAGDELGNI 299 Query: 300 AEEQGKSLS------------------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 A EQ SL D G + + + ++ + D V Sbjct: 300 AFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEGIGDLSEVVEEAFSEDVLEHGYNSDLIRV 359 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 Y++ + + + +EV I Q+R +A++ +E + L L G S+ Sbjct: 360 DEDR--YLVVRLLEHREAEPKPLEEVADTIREQLRQERAADLARERAEELVARLRDGDSL 417 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 DE++ ++ + + E ++ F + V L DG Sbjct: 418 DELAEELEVERFTVEDAYRDDRSHP----------EAVVREAFALEVDGYAR--VELDDG 465 Query: 462 SYMWVQIKES 471 S +++ Sbjct: 466 SAALLRLDGI 475 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 96/264 (36%), Gaps = 28/264 (10%) Query: 367 VKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 V++++ + ++ E L S++ + + +D G + Sbjct: 272 VREELLADSIREQYRTELIEAGDELGNIAFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEG 331 Query: 426 KGK--EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV- 482 G EV + E +L + D + + + Y+ V++ E A + LEEV Sbjct: 332 IGDLSEVVEEAFSEDVLEHGYNSD-------LIRVDEDRYLVVRLLEHREAEPKPLEEVA 384 Query: 483 ---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 + + A+ +A +LV ++G + ++ + L T R D Sbjct: 385 DTIREQ----LRQERAADLARERAEELVARL-RDGDSLDELAEELEVERFTVEDAYRDDR 439 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-----EKDKFISYL 594 + + + F+ V+ +++G + + ++ G + E+ + L Sbjct: 440 SH---PEAVVREAFALEVDGYARVELDDGSA-ALLRLDGISRGDPEGLSAQERQQLQQQL 495 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTV 618 +M + ++I L+++ + + Sbjct: 496 QRMAGDSEVRALIRALRAEAEIEI 519 >gi|87200036|ref|YP_497293.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM 12444] gi|87135717|gb|ABD26459.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM 12444] Length = 646 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 220/643 (34%), Gaps = 18/643 (2%) Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSS 55 ML R ++ + A +FL ++ + F ++ + F VG ++ Sbjct: 1 MLGFFRSFLKSRIGVAIALLFLGLIALAFASADVTGSGFGGVAGGDRAAKVGSGRIGTGE 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + QK + + GL + +L ++ L ++ + GL V Sbjct: 61 LGKALTSAFEQDRQKQPGLTMKQFLDGGGL-EGVLSGMIDRLALAEWGKKHGLAVSDRLV 119 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI + F G D KFS + LA+ G+ +KE + + L ++ G + Sbjct: 120 DSEIVKIGAFQGPDGKFSQKAYEQLLAQRGLTDKEVRNDLAQGLMARQLLLPAAFGAQMP 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + E R I + + P + L ++ K Y PE + I Y Sbjct: 180 AEAVLRYASLLTEKRVGTIISVPSLAFAPAGGPDDNALAAFYNANKGRYMQPERRTIRYA 239 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L D + ++ E+ Y+ N Y E R+V Q++ P + A + KG Sbjct: 240 LVDEATLKNVPAPTDAEIANRYKLNTAVYAPSEQRSVTQVIVPTEAAARALAAEVGKGGA 299 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A +G S L +++ + + + A G G+ + V Sbjct: 300 LDTAARSKGLVAS--KLADQTRDTLANQTSKAVADAAFAATAGTLATPAKSGLGWHVLKV 357 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +K + + + + +I + + K + + ++E+ + GT + +I++ + Sbjct: 358 DAVKRNPGKTLDQARAEIVTALTLEKRRAALSDLAAQVEQEIDSGTGLADIAKNLGLTVQ 417 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + G A L+ F + P + + + Sbjct: 418 TTQPLLANGTVFGKAAEKAPADIAPLVQAAFAMEREGEAQLAEIKPGEKFAIYDVGQLTA 477 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 A L + V +DW + + + + A++++ K G + K G ++ Sbjct: 478 ATPAPLAAIKDAVARDWALQQGSAKAKAAADRILAALDK-GTPLAEAVKLAGVAIPAPQP 536 Query: 534 I---NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 I + + ++ +F+ K N + V + + G V+ +D+ Sbjct: 537 IDMGRQQIGAMQGQVPPPLALLFAMAEGSNKRLEGPNKAGWYVVSLKDIVPGAVKREDQI 596 Query: 591 ISYLTQMMNKDLLDSVIAYLK----SQYSVTVHDNLIQRYLDG 629 + ++ + + L+ + +++ I+ + Sbjct: 597 FAGASRELGAVTGNEYAESLRRAIGKDLGIERNESAIKAVRNQ 639 >gi|29654742|ref|NP_820434.1| hypothetical protein CBU_1451 [Coxiella burnetii RSA 493] gi|29542010|gb|AAO90948.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493] Length = 522 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 93/501 (18%), Positives = 194/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y+++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G I + +D + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS VI V + +PS + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VILRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + L G+ I +++ F D + + L DGS + Sbjct: 309 LNLKINTTLLFSREGEK------EGIAVNPKIVAAAFSDDVLQGGNNSDVIELKDGSLVI 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P+ L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519 >gi|94969792|ref|YP_591840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] gi|94551842|gb|ABF41766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] Length = 654 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 105/666 (15%), Positives = 232/666 (34%), Gaps = 58/666 (8%) Query: 1 MLEIIRK--ASRTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVP 52 M+ ++ ++ V L V+ V ++ +V+G S + V + + Sbjct: 1 MIRFLQTPSKTKKIVLGGLLTVICVMMVVTLIPGGGIFGFGDTTVTGDSDLAKVDGEAIT 60 Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 + + + Q+ L + ++ L+ + +GL Sbjct: 61 AADASKAAQNM--AQQQRYPAQF------VPFLMPQAVEMLIKQKAVLDEAHRMGLNVSD 112 Query: 113 GRVWGEIARS---PLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMF 168 + + + + K N D + + + + + ++ K + + G+ Sbjct: 113 EELRAVLHKGQFGEILFPKGNYVGDDAYQNFVQSQFSMTVPQFELELKKSIEIQKLRGVV 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--A 226 ++ +D R DY L+ + +PS+A + W+E +KD ++ Sbjct: 173 EASATVADADIDNLVRQQQTKVKFDYASLSLADIEKGINPSDAEMKAWYEAHKDQFKDSL 232 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE ++I Y+ + ++ S+ ++Q Y +K ++ P+ TV+ ++ + AD Sbjct: 233 PEKRKIKYVSVIGSKLP-GVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQGADAK 291 Query: 287 ------------FQSLKKGKKFIQLAEEQGKSLSDISLG-SFSKEYIPDVSLADSIFSLA 333 + + G F +LA++ + + D+ + Sbjct: 292 TDAAAKAKAEDYLKQARGGANFGELAKKYSDDKGTGDSTLEVTPQGNLVKEFKDASLA-G 350 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K GD + FGY I + +P+ S EVK IA M KA++ ++ L Sbjct: 351 KTGDILGPVKTQFGYHIIKIQKNEPAGARSLDEVKSQIAIVMGGQKAADAAQKAADNLRN 410 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 A +D+ + V + + I Q + VF + D Sbjct: 411 S-ARVQGLDKAAAAAGDTVETTDFVTQSSL------LPGIGQAPQFMNAVFKANAKSGAD 463 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 G Y ++ + P E+ V++ +K K + KA +L + ++ Sbjct: 464 VAPIT--GGYAVYEVTDVQPPATPTFEQAKAQVEQQFKAGKAQTLIVQKAQEL-ADRART 520 Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS--QVFSGPVEMVKCFPIENGLSY 571 + + K G ++ T+ + + G S VF+G + P++ G + Sbjct: 521 EHDLKKAAKEAGVTVKTSEMVTQSSQVPDVGSLSGPSFTAVFAGKTGDI-IGPVQGGRNA 579 Query: 572 VVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYL----KSQYSVTVHDNLI 623 +V V + E K++ L ++L+ ++ L + + + I Sbjct: 580 IVIAVVEKQEPTADEMTKGKEEARQQLLAKKKDEVLEIYVSNLIASMEKSGKIKRNKKAI 639 Query: 624 QRYLDG 629 +R G Sbjct: 640 ERLSQG 645 >gi|161830280|ref|YP_001597297.1| hypothetical protein COXBURSA331_A1623 [Coxiella burnetii RSA 331] gi|161762147|gb|ABX77789.1| conserved hypothetical protein [Coxiella burnetii RSA 331] Length = 522 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 92/501 (18%), Positives = 194/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y+++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G I + +D + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS V+ V + +PS + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484 Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + L G+ I +++ F D + + L DGS + Sbjct: 309 LNLKINTTLLFSREGEK------EGIAVNPKIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P+ L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519 >gi|222056568|ref|YP_002538930.1| hypothetical protein Geob_3486 [Geobacter sp. FRC-32] gi|221565857|gb|ACM21829.1| conserved hypothetical protein [Geobacter sp. FRC-32] Length = 526 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 91/531 (17%), Positives = 191/531 (35%), Gaps = 37/531 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI ++ + F+ +WG D +G V K+ Sbjct: 1 MLGIMRKYKQSVLIKIVFCIIVLSFVGTIFLVWGRGDE---TTGGDFAAKVNGTKISMDD 57 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ ++ + + Q G + + + +G+ K +++L+ A + + + +G+ + + Sbjct: 58 YLKNYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLIDNALIVKEAKRMGIAVNKDEI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F KD F+ D + L + + + + + S Sbjct: 118 ANEIAKVPAFQ-KDGVFNFDQYTQMLKAYRMTPANFEEGQEQEMLVKKAREKVKERATVS 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L QA + + +I + V ++ LT + + ++ ++ PE I+Y Sbjct: 177 DQDLQQAFNKQNDKVDLSFISFSPSDVKNEVKVTDQDLTTYLQGHEKEFQTPEKVSIAYA 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------PEIRTVEQLVFPNQKEADEAFQ 288 L K ++++E + Y KN ++Y E++ + QK EA++ Sbjct: 237 LVSPSRFSSKATVTDEEAETYYRKNIDRYQGKGGILPFAEVKDRAKADAIKQKGTREAYE 296 Query: 289 SLK-------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI--FSLAKKGDFT 339 ++ KG A G + + L + P + I L K+G+ Sbjct: 297 TVADTINKNLKGGDIKAAAASLGVKVDETPLFTAKTAPAPLADEGEVIKRAFLLKQGELG 356 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 I + G I V KP+ E+K + ++ KA E K+ + LA GT Sbjct: 357 GPIETAKGIYIIKVMEKKPAAVPPLAEIKGQLTQKVTEEKARELAKKKAEEALAQLAKGT 416 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 ++ G + I L+ F Sbjct: 417 G-----------TVKTQETGAFAYAANGV-IPRIGTSPDLMEAAFNLTAAAPTPKNTFKA 464 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + V++K+ I ++ +++ K E + + +L + Sbjct: 465 GDRWYAVKLKQRIELNRADFQKNKEQIRQTLLPKKQQEALDNWMKELKAKA 515 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 19/271 (7%) Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + F EVK K + + E G + + + + PL Sbjct: 268 KGGILPFAEVKDRAKADAIKQKGTREAYETVADTINKNLKGGDIKAAAASLGVKVDETPL 327 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 A + + +++ R F + G Y+ +++ E PA Sbjct: 328 F------TAKTAPAPLADEGEVIKRAFLLKQG-ELGGPIETAKGIYI-IKVMEKKPAAVP 379 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 L E+ + + K E KA + + + +K + + GA N + Sbjct: 380 PLAEIKGQLTQKVTEEKARELAKKKAEEALAQLAKGTGTVKT--QETGAFAYAANGV--- 434 Query: 538 DNENKFFGYDGISQVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596 D + F+ + G + K+ + K + Q Sbjct: 435 -IPRIGTSPDLMEAAFNLTAAAPTPKNTFKAGDRWYAVKLKQRIELNRADFQKNKEQIRQ 493 Query: 597 MM----NKDLLDSVIAYLKSQYSVTVHDNLI 623 + ++ LD+ + LK++ + ++ +++ Sbjct: 494 TLLPKKQQEALDNWMKELKAKAKIQINPSIL 524 >gi|153837998|ref|ZP_01990665.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus AQ3810] gi|149748606|gb|EDM59465.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus AQ3810] Length = 459 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 80/468 (17%), Positives = 183/468 (39%), Gaps = 25/468 (5%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ + + + + R + + ++ + ++ + +++ Sbjct: 1 MREQLLTALQSSEFTLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKA 60 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 DN+ PE ++SY+ +K+I++++++++ Y+++ +KY S E R V ++ Sbjct: 61 NPDNFTRPEQVKVSYVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEG 120 Query: 279 -NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 ++ +A L G F +A+E+ LG ++ + D + ++ F+L Sbjct: 121 DDEAKAQAILDELNAGADFAAVAQEKSDDFGSAENGGDLGWIERD-VMDPAFEEAAFALK 179 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 GD + ++ FGY I + +K + F EV +I ++ KA ++ E LE Sbjct: 180 NPGDMSGLVKSDFGYHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELER 239 Query: 394 -FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 S+D+ S K ++ ++ DF + V EV Q L K+D L+ Sbjct: 240 VAFEYPDSLDDAS---KAINQEVKTTDFISQ-VDAPEVLRNQAVMQALLSPEVKEDGLN- 294 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 + + + V++++S L EV V + VK + ++V ++ Sbjct: 295 SEAIEVAPEHIIVVRVEDSRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNE 354 Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--S 570 + + ++R + PV+ + L + Sbjct: 355 GNT---AVLAENNLTFGEQETVDRRS------PLATTVFAMAKPVDGKPVYGQSKDLEGN 405 Query: 571 YVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 VV ++ K +D+ + + ++ L SV+A L++ + Sbjct: 406 IVVIELDAVKAELDSSLEDQVAMQMQRASSQQDLSSVLAVLRANTDIE 453 >gi|165919397|ref|ZP_02219463.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|165916913|gb|EDR35517.1| conserved hypothetical protein [Coxiella burnetii RSA 334] Length = 522 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 92/501 (18%), Positives = 195/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y+++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G + I + +D + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS V+ V + +PS + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + + ++ + + +AA P +++ F D + + L DGS + Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P+ L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQLGNLEYQFYMQAARSRAKIKIN 519 >gi|325265616|ref|ZP_08132306.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC 33394] gi|324982886|gb|EGC18508.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC 33394] Length = 608 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 101/625 (16%), Positives = 243/625 (38%), Gaps = 56/625 (8%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 ++++ L ++ V F+ +G++ V + +V +G Q + ++ + + SQ G Sbjct: 11 LSQVLLGIIGVSFVGFGIASFEI-VRDNRYIVKIGDQVINRAALDEAVRN-----SQASG 64 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +++ LV A L + + +G+ ++ I +P+FH + KF Sbjct: 65 GSAS---------REEVFQTLVQRAYLMEGAKALGIAVSDTQIKQGIVDAPIFHDEQGKF 115 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S + F + L ++E ++ + L+ ++ M + S ++ + R + Sbjct: 116 SPERFQTFLKNNHLSESAFMQMERERLTLVSLLQMLNSNVVTSG-QAERYIQTQMAERVI 174 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 V N + A +A L ++++ +K NY + Y++ + K +S +E Sbjct: 175 RTSVFNPENYAAQVKAGDAELQKYYDAHKSNYAVAPGVKYEYMVVSPKDLVDKQTVSAEE 234 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AFQSLKKGKKFIQL 299 +QA + R + ++ K AD A ++ KF +L Sbjct: 235 VQAALKTATT--NQKPTRRIAHIMINAPKSADAATRQKAREQAEKIAQEAKASPDKFAEL 292 Query: 300 AEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ G + + LG+ ++ +P L D+ F LA+ G + V+ FGY I V Sbjct: 293 AKQYSQDTGSAQNGGDLGALTQGSLPAKPLDDAAFKLAQ-GAVSDVVETDFGYHIVRVLE 351 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+ + + + ++++ KA + ++ + + EF + +++ + Sbjct: 352 IQGNDA---AAQEARVRQELQLKKAQQAYEKIREEIAEFTLNTPDLKAAAQKFGL----- 403 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKESIPA 474 V + + ++ + + +F +D K + + DG+ +V++ ++ PA Sbjct: 404 -TVQQQNEWLTQANAGSLHVPKAVADTLFSEDVMTKKHISEGISADGATWFVRVTDTRPA 462 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 L ++ D+ ++ + A Q + K + + + Sbjct: 463 GTETLATARDRIRADFVRAESIRLARAAAQQAQTDLQAR--------KAVTLAWTPEQNV 514 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEKDKFIS 592 M + D + + + P + + NG+ +V + N+ +G Q Sbjct: 515 LPMQMQAALVPADYKAFMAAVPNNGQPAYAVVERNGMVELVEVLKNNPLGGGQIIQAVRM 574 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVT 617 L Q+ + + + + YL+++ Sbjct: 575 QLAQLRGETVTQAYLQYLQTKIPTK 599 >gi|153209250|ref|ZP_01947306.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|120575458|gb|EAX32082.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] Length = 522 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 92/501 (18%), Positives = 195/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y+++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G + I + +D + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS V+ V + +PS + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSDVVQLTAIKPANFKNITE 484 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + + ++ + + +AA P +++ F D + + L DGS + Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P+ L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSDVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQLGNLEYQFYMQAARSRAKIKIN 519 >gi|154706549|ref|YP_001423952.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway 5J108-111] gi|154355835|gb|ABS77297.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway 5J108-111] Length = 522 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 92/501 (18%), Positives = 195/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLMSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y+++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G + I + +D + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS V+ V + +PS + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + + ++ + + +AA P +++ F D + + L DGS + Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P+ L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519 >gi|148264907|ref|YP_001231613.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4] gi|146398407|gb|ABQ27040.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4] Length = 525 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 96/531 (18%), Positives = 198/531 (37%), Gaps = 38/531 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI V+ F+ +WG D V K+ F Sbjct: 1 MLGIMRKYKQSVLIKIVFCVIVFSFIGTIFLVWGRGD---KTDSGDFAAKVNGTKISFDE 57 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + ++ + G+ Q G + E + +G+ K L++L+ A + + + +G++ + + Sbjct: 58 YQKNYYRMKGIYEQIYGRSMTPEMEKQLGIKKTALESLIDNALILKEAKRLGIDVNRDEI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F KD F+ D + L I + + + + + S Sbjct: 118 SAEIAKMPAFQ-KDGVFNFDQYTQMLKANRITPQNFEESMEEDMLVKKTREKIKERATVS 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L QA + + + +I + V ++ L + + +++ ++ PE I+Y Sbjct: 177 DQDLLQAFKKQNDKIDLSFIAFSPAEVKGEVKVTDQDLNSYLQGHQEEFKTPEQLSIAYA 236 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF----------SPEIRTVEQLVFPNQKEA-D 284 + D + K+ +S++E Q Y+KN ++Y E + L + KEA + Sbjct: 237 VLDPAQFAAKLTVSDEEAQTYYQKNIDRYQGKGGILPFAEVKEQAKADALKLKSTKEAYE 296 Query: 285 EAFQSLK---KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL--AKKGDFT 339 + ++ K A G + + L + AD I K+G+ Sbjct: 297 KVADAVNKNLKNADINAAAASLGVKVLETPLFTEKAPATALAGEADVIKKALFLKQGELG 356 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + S G + V P+ ++K ++ ++ KA E K+ + Sbjct: 357 GPVETSKGIYLIKVKEKIPAAVPPLAQIKTQVSQKVAEEKARELAKKKAE---------- 406 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + +++ K ++ L G G V I L+ F T Sbjct: 407 --EALAQLTKGSAVKLQETGSFGYAPTGV-VPRIGTSADLMEAAFALTTAAPAAKTPFKV 463 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 S+ V++K+ A ++ +K+ K E + + +L + Sbjct: 464 GNSWYAVKLKQRTEANTADFQKSKEQLKQALLPKKQQETLDNWLKELKSKA 514 >gi|212212179|ref|YP_002303115.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212] gi|212010589|gb|ACJ17970.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212] Length = 522 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 92/501 (18%), Positives = 193/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + S A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVS--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISRAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G I + +D + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS V+ V + + S + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VVLRVKDHQLSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSAVVQLTAIKPANFKNITE 484 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + L G+ I +++ F D + + L DGS + Sbjct: 309 LNLKINTTLLFSREGEK------EGIAVNPKIVAAAFSDDVLQGGNNSDVIELKDGSLVV 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ + L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQLSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSAVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQWGNLEYQFYMQAARSRAKIKIN 519 >gi|238021983|ref|ZP_04602409.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147] gi|237866597|gb|EEP67639.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147] Length = 610 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 107/624 (17%), Positives = 221/624 (35%), Gaps = 54/624 (8%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 I L ++ V F+ +G L +S + +V VG Q + + + + Sbjct: 12 VTILLSLIAVSFMGYGFVS-LQGISRDNYIVKVGDQIITRYALDQAVQN----------- 59 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 +E A + + L+ A L + + +G+ ++ + +P FH KF Sbjct: 60 ---TEAAGEPASREAVFQTLLQRAYLLEGAKQLGIVVSDEQIKQIVVDNPQFHDTSGKFD 116 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 +F + L +E+ ++ + LS ++ S+ Q RS Sbjct: 117 PKLFQAYLTNTRQSEESFMQAQRENLSVAALLQTL-NSNAVSDFQAQQVINAVLAPRSTR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 VLN + +A L +++E K +Y P+ + YI+ + K +S+ E+ Sbjct: 176 AYVLNPQAFADKVKADDAALKKYYEANKKDYLLPQGAKFEYIVLSPKDIAGKQSVSDAEI 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------------GKKFIQLA 300 +A Y +K R V ++ K AD A + + ++F ++A Sbjct: 236 EAAYNASKGSLKP--KRRVSHILIEAPKSADAATREKARAEAEKIAAEAKAHPEQFAEIA 293 Query: 301 E----EQGKSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + G + + LG +++ I +L D+ F+L KG+ + V+ FGY + V++ Sbjct: 294 KRASQDVGSAANGGDLGEIAQDGKIGSKALEDAAFAL-NKGEVSGVVESDFGYHVLRVTD 352 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I VS K I + ++ KA ++ + + L E + D++ + + + Sbjct: 353 I---ADVSLAAQKDSIRSSLQAKKAQQEYNKQREALSEAVFSAR--DKLQPAAQQFGLTV 407 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + + + L L+ DG +V+ E+ Sbjct: 408 QTQNEWTTRANAGSLKIPAAVAEALLAGDVFSKKLNSAAI--NVDGETWFVRPTETRTES 465 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 E+ V + +K ++ A L E G N + T Q+ Sbjct: 466 TETFEQAKPRVAERFKLAESRRLALEHAKNLQKEL--------AAGNNPAVAWSTVEQVV 517 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDKFISY 593 + + + + P + + + +V + VG Q Sbjct: 518 PLQVRANLSDDAYFAFMQAIPKNGKPAYAVLDMPAAPQLVEVQSIQTVGNPQALANAKQT 577 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617 L Q M ++++ + I L + Sbjct: 578 LAQEMGENMIQNYIESLAASIKTQ 601 >gi|212219179|ref|YP_002305966.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154] gi|212013441|gb|ACJ20821.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154] Length = 522 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 91/501 (18%), Positives = 193/501 (38%), Gaps = 37/501 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59 ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ + Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +++ S + G + A++ L ++ L NL+ L E +G + I Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F ++ KFS F L + +++ ++ V G + Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R Y+++++ + + ++ +++K++++++APE I+Y+L Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237 Query: 240 HEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP-------NQKEADEAFQSLK 291 +++ +S+ E++ YE N+E K F+ ++Q + +K + + Sbjct: 238 EMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297 Query: 292 KGKKFIQLAEEQGKSLSDISL--------GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 A + ++ L G + I + + D + Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFTGDVLQGGNNSDVIELKD 357 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GS V+ V + +PS + + V I +Q++ A K ++ + G S++ Sbjct: 358 GSL--VVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVES 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPD 460 I++ + + V K + ++ F PL KDH T L + Sbjct: 416 IAKANHLFWRNEKEVKRNNKSIPA----------AVMASAFS--IPLKKDHSMTTTVLNN 463 Query: 461 GSYMWVQIKESIPARDRKLEE 481 G VQ+ PA + + E Sbjct: 464 GDSDVVQLTAIKPANFKNITE 484 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 20/281 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRR 407 SF +VK I + K + + + +L TS++ +R+ Sbjct: 249 HEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQ 308 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMW 465 + + ++ + + +AA P +++ F D + + L DGS + Sbjct: 309 LNL---KINTTLLFSREGEKEGIAANP---KIVAAAFTGDVLQGGNNSDVIELKDGSLVV 362 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +++K+ P+ L+ V ++ KT + S A ++ E EG++ I K Sbjct: 363 LRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEI-HEGRSVESIAKANH 421 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP 583 ++ R NK ++ FS P + + N V ++T K Sbjct: 422 LFWRNEKEVKRN---NKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSDVVQLTAIKPAN 478 Query: 584 -----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 ++K+ + L+ + + +S+ + ++ Sbjct: 479 FKNITEKQKNSLENLLSTQLGNLEYQFYMQAARSRAKIKIN 519 >gi|219681828|ref|YP_002468214.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471530|ref|ZP_05635529.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624671|gb|ACL30826.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 623 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 116/626 (18%), Positives = 242/626 (38%), Gaps = 37/626 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + + K L V+ + ++ +S + + +V +K+ F+ F + E + Sbjct: 10 NSIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68 Query: 70 KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125 +G + + +L L++ L+Q+ +++ LE + + I SP+F Sbjct: 69 ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 K+NKFS + +++ L EYI+ K ++ +++ + Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R + ++ + +N +F+K +DN+ PE +I+++ K Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304 I N E+ Y KN +Y + E R + N+++A L + F ++A+EQ Sbjct: 246 IHCENKEIYDWYIKNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305 Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 D +G S + IPD +L KK + VI ++I ++ + Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGT 362 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV I Q++ K+ + E ++ L +I R K +I + D+ Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477 K K V IP +Q +F +F KD + H + L ++IK+ + Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E V ++ K + +K +E K+ +++ + ++ + K I+R Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQG---REKLFKQSNLYFTDPEIISRY 536 Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591 D S VFS P + ++++ + EK+K + Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617 YL++ + + +S++ L+ + + Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616 >gi|15617076|ref|NP_240289.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386976|sp|P57550|PPID_BUCAI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|25403639|pir||G84985 peptidylprolyl isomerase (EC 5.2.1.8) [imported] - Buchnera sp. (strain APS) gi|10039141|dbj|BAB13175.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 623 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 116/626 (18%), Positives = 242/626 (38%), Gaps = 37/626 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + + K L V+ + ++ +S + + +V +K+ F+ F + E + Sbjct: 10 NSIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68 Query: 70 KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125 +G + + +L L++ L+Q+ +++ LE + + I SP+F Sbjct: 69 ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 K+NKFS + +++ L EYI+ K ++ +++ + Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R + ++ + +N +F+K +DN+ PE +I+++ K Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304 I N E+ Y +N +Y + E R + N+++A L + F ++A+EQ Sbjct: 246 IHCENKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305 Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 D +G S + IPD +L KK + VI ++I ++ + Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGT 362 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV I Q++ K+ + E ++ L +I R K +I + D+ Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477 K K V IP +Q +F +F KD + H + L ++IK+ + Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E V ++ K + +K +E K+ +++ + ++ K K I+R Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKLF---KQSNLYFTDPEIISRY 536 Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591 D S VFS P + ++++ + EK+K + Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617 YL++ + + +S++ L+ + + Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616 >gi|311087368|gb|ADP67448.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087867|gb|ADP67946.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 623 Score = 255 bits (652), Expect = 2e-65, Method: Composition-based stats. Identities = 116/626 (18%), Positives = 241/626 (38%), Gaps = 37/626 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + K L V+ + ++ +S + + +V +K+ F+ F + E + Sbjct: 10 NRIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68 Query: 70 KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125 +G + + +L L++ L+Q+ +++ LE + + I SP+F Sbjct: 69 ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 K+NKFS + +++ L EYI+ K ++ +++ + Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R + ++ + +N +F+K +DN+ PE +I+++ K Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304 I N E+ Y +N +Y + E R + N+++A L + F ++A+EQ Sbjct: 246 IHCENKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305 Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 D +G S + IPD +L KK + VI ++I ++ + Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGT 362 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV I Q++ K+ + E ++ L +I R K +I + D+ Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477 K K V IP +Q +F +F KD + H + L ++IK+ + Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E V ++ K + +K +E K+ +++ + ++ K K I+R Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKLF---KQSNLYFTDPEIISRY 536 Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591 D S VFS P + ++++ + EK+K + Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617 YL++ + + +S++ L+ + + Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616 >gi|85858466|ref|YP_460668.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB] gi|85721557|gb|ABC76500.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB] Length = 533 Score = 255 bits (652), Expect = 2e-65, Method: Composition-based stats. Identities = 88/536 (16%), Positives = 204/536 (38%), Gaps = 34/536 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFI 57 MLE++RK ++ W+ K L ++ V F+ + +G S TV V +++ + Sbjct: 1 MLELMRKHAKNWLMKFLLGMIIVVFIF-----YFGTRTGKEKSETVAIVDGKEIALAEVQ 55 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ G + E + + L + LD+L++ A + Q ++ L A V Sbjct: 56 KEYSNLAEFYRRQYGGSLTDEMLKGLELKQNALDSLIAQAIIMQKAGELNLTATDDEVRN 115 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F D F+ ++ L + +E+ +MLS + + ++ S+ Sbjct: 116 FIMAYPAFQR-DGTFNEKIYQQMLRLNRMTPEEFEASQQRMLSAAKLEQLIQEAVKVSDQ 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + F E + Y++ PS L + +++ + +R PE +I + F Sbjct: 175 EVFDFFSFQNEQIKISYLMFKPADFKGAISPSRKDLETYLKEHGNEFRVPEQMQIKALFF 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFS-----PEIRTVEQLVFPNQKEA--------- 283 + K +I ++ YE+++ ++ P ++ V+ + + Sbjct: 235 PGRDFAGKADIPESDIVDYYERHRSEFAQKGGKAPSLKEVKPRIINELAKISGMAAAAEQ 294 Query: 284 -DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 +A ++ + + F A + + +L + + + + + L KK + + Sbjct: 295 AKKAHDTIYQEENFDSYAAQNNLKTVTTDFFTLNNIPQPFSKVSDFSKIVADL-KKDEIS 353 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 V+ GY V + K S+ +++++++A + +A + ++ L G Sbjct: 354 KVLSDEEGYFFIKVGSRKSSYIPELKDIEQEVAKRYTEMEARNRCRKAADAALGRLKKGE 413 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ I++ K+ + +G G + + +QL ++ + Sbjct: 414 SLVRIAQENKLAPAE------SGFFKPGAAIPGLDANQQLSMALYQLSESNPFPDQTLEI 467 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + + +Q KE E ++K+ +K E + KEG+ Sbjct: 468 NNGFAIIQFKERSKIDTTDYEAKKENLKQLLLMMKRNEYFMTWLENTKAAMIKEGR 523 >gi|219682383|ref|YP_002468767.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622116|gb|ACL30272.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086780|gb|ADP66861.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 623 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 116/626 (18%), Positives = 240/626 (38%), Gaps = 37/626 (5%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + K L V+ + ++ +S + + +V +K+ F+ F + E + Sbjct: 10 NRIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQKK 68 Query: 70 KIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLF 125 +G + + +L L++ L+Q+ +++ LE + + I SP+F Sbjct: 69 ILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIF 128 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 K+NKFS + +++ L EYI+ K ++ +++ + Sbjct: 129 Q-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKL 187 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R + ++ + +N +F+K +DN+ PE +I+++ K Sbjct: 188 LSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNF--K 245 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG 304 I N E+ Y +N +Y + E R + N+++A L + F ++A+EQ Sbjct: 246 IHCENKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQS 305 Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 D +G S + IPD +L KK + VI ++I + + Sbjct: 306 TDPISSKKDGDIGWISIDLIPD---EIKHANLNKKNQISDVIPFHNEFLIVKLDETQIGT 362 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 EV I Q++ K+ + E ++ L +I R K +I + D+ Sbjct: 363 QKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKN--DPGKIERILKENNILIQETDW 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDR 477 K K V IP +Q +F +F KD + H + L ++IK+ + Sbjct: 421 FDKKSIPK-VLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEIQ 479 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E V ++ K + +K +E K+ +++ + ++ K K I+R Sbjct: 480 HFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKLF---KQSNLYFTDPEIISRY 536 Query: 538 DNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVGPVQEKDK--FI 591 D S VFS P + ++++ + EK+K + Sbjct: 537 DL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVIL 590 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617 YL++ + + +S++ L+ + + Sbjct: 591 EYLSRHNTEIIFNSILKDLREKSIIK 616 >gi|189426095|ref|YP_001953272.1| hypothetical protein Glov_3046 [Geobacter lovleyi SZ] gi|189422354|gb|ACD96752.1| conserved hypothetical protein [Geobacter lovleyi SZ] Length = 531 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 87/534 (16%), Positives = 189/534 (35%), Gaps = 40/534 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML++IRK + V K V++ + F+ +WG D S + V R + + Sbjct: 1 MLDVIRKKKESVVIKAVFVIIVLSFIGTIFLVWGKGDEGMGRS-AGYAAKVDRTTISLEA 59 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + N+++ Q G E + + L ++ +D L+ + + + G+ + Sbjct: 60 YQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSKEEI 119 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA F ++ F ++ L I + + + L + + S Sbjct: 120 SAAIAGMSAFQ-QNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEKTRKAVMDKVVIS 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + + + Y + V A +A L + K + +++PE +S+ Sbjct: 179 DDEALKQFHKEQDKLELSYASFSAADVSAEVKLGDADLQDYLTKNAEKFKSPEKIALSWF 238 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + + ++ +E ++ Y KN ++Y + + + +AD Q K Sbjct: 239 VLENSGQSHVQAVTAEEQESFYRKNMDRYVDKDNAPLPYEQVKERVKADAQRQKAAK-AL 297 Query: 296 FIQLAEEQGKSLSDISLGSFS-------------------KEYIPDVSLADSIFSLAKKG 336 + + A+ +++ LG + + +L F L K+G Sbjct: 298 YEKAADTLFQNIKSGDLGLVAAKLGAKTQDTPLFSANAAPAALAGETALLKKAFEL-KQG 356 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + + G I V K + +V+ + Q+R KA+E K+ ++ LA Sbjct: 357 ELGGPVETAKGIYIFKVKEKKAAELPPLAQVRTTVEQQLRALKAAELAKQKAVEAQKQLA 416 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 + L G + KG ++ I + L+ +VF + Sbjct: 417 G-----------NGAGLKLQATPAFGYNSKG-DLPGIGNSKPLMEKVFELTTAGATPSEP 464 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 L + V++K+ A +VK+ K E + + +L + Sbjct: 465 MLVGNRWYAVRLKQRNAAPQADFAPRKDEVKRQLLPAKQEEALRAWLKELRSKA 518 >gi|294669107|ref|ZP_06734191.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308921|gb|EFE50164.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 566 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 100/592 (16%), Positives = 218/592 (36%), Gaps = 57/592 (9%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 AKI L ++ + F+ +G S + GS +V VG +K+ + + ++E Sbjct: 12 AKIMLGLIALTFIGFGAS--TVAAPGSDYIVKVGDEKISTQNVQAAVREE---------- 59 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + ++ L L A L + +G+ ++ I F ++ +F+ Sbjct: 60 --------GLESNQDALTVLTDRAYLYEGARAMGINVSLEQLKQVIMDDKGFQDENGRFN 111 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 F + LA+ G+ E + I+ +V + G S+ L++ R R + Sbjct: 112 EQKFRNFLAQSGMTEDQLIEKLRHQFELQNVANLAANGNIVSSQQLERIARLMQAEREIR 171 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 V++ R+ A +A L +++K K Y P+ + YI + +S +E+ Sbjct: 172 TAVVDPRNFAAGVKVDDAALKAYYDKDKSKYLIPKAVKFEYIELSAKTLADRQTVSEEEV 231 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQ 303 + + + + + + V ++F + EA++ K F LA++ Sbjct: 232 KKAFAEQQS--SAQPKQEVSHIMFALPQGGDKAKIKAEAEKVLAEAKASPDNFAALAQKY 289 Query: 304 GKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + S +LG K +I L KGD V + G+ I ++N + Sbjct: 290 SQDAATAQSGGALGVVDKSSALPEEFKAAIAKL-NKGDIALVESTA-GFHIVRITNTQ-- 345 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLV 418 SF E K + +++ KA + + + + L + S+ + + + + Sbjct: 346 GQQSFDEAKASLEAELKQKKAQQALAQMRQTLSQTTFDFPDSLKAAAEKTGL------PI 399 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDR 477 + + + + L +F + K ++ + G WV + E+ Sbjct: 400 QSHNEWLSRQNAVQQNIPAEWLEVLFSDEVFKKKHNSDVITVGDTSWVLRATETREESTP 459 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E+V V+ + ++A+ +A +L+ E K GK + ++ Sbjct: 460 AFEQVKEQVRTAYVNSESAKAAMEQAKKLLAELQKGGKP--------ELAWSEKETLSAS 511 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENG-LSYVVFKVTNSKVGPVQEKD 588 D + + P + + + G + ++ +V +SKV + Sbjct: 512 DARLRLSPQALAVLAKAHPTDGKPAYALLEGQPAPLLVEVLSSKVQKADADE 563 >gi|322434836|ref|YP_004217048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX9] gi|321162563|gb|ADW68268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX9] Length = 662 Score = 252 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 105/641 (16%), Positives = 222/641 (34%), Gaps = 61/641 (9%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-----------GRQKVPFSSFINSWK 61 + L + + + G+ D + S +V + V + + Sbjct: 19 FITVALGAMVITLV-PGIFDNVDSGGSGVNYATVHAPGLFGRFGGDSEPVLQTEVTRAAT 77 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 Q+L QK+ ++ ++ ++ LV A L + +GL+ + E+ + Sbjct: 78 QQLE--QQKLPPML------MPYIESRVAQQLVQEAILKLEADRLGLQVADSDLLRELHQ 129 Query: 122 SPLFHG--KDNKF-SHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + + ++ D +++ + + + ++ K + + + GG+ S+ Sbjct: 130 GQIGQILFPNGQYIGDDAYMNFVQNQLNMTRGDFEILVKKEMEVARLQALITGGVTVSDN 189 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA--PEYKRISYI 235 + + R DY V+ + + A +PS++ L +F+ + Y PE ++++Y Sbjct: 190 AVRDSYRVSGTKVKFDYAVITSDTLRATVNPSDSDLQTFFKTNQARYATAVPESRKLNYF 249 Query: 236 LFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------- 285 F + K ++++ +LQ Y + +Y + V ++ AD Sbjct: 250 AFGADQIPGGKPQVTDADLQTYYNAHLAQYQVKDQAKVRHILIAVPAGADARTDAAAKAK 309 Query: 286 ---AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 + +K G F LA + G + LG S + FSL K G Sbjct: 310 ADDLLKQIKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTV-PEFDKASFSL-KPGQT 367 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + VI FGY I V + + T EVK +I + K K L + A Sbjct: 368 SDVIKTKFGYHILQVEERQNAHTKPLNEVKAEITPIVEQQKFGNAEAAYAKSLSDE-ARK 426 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 +D+ + + + V G V + LL + F +V+ Sbjct: 427 NGIDKTAAAHGLHATTTDFVGKDGV------VPGVSDSTALLAQAFTTTK-KGDPISVST 479 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 DG + Q+ + + + + D++ K + ++ K N+L +KE + Sbjct: 480 GDG-FAIFQVVDIQAPHAPTFDAYKSHILDDYRAEKVPQLLNEKLNKLDAR-AKELNDLH 537 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVT 577 L + +++ + + G F V PI G + +V VT Sbjct: 538 KAAAELNIPVKSSDLVGKDGQVPDLGAMSGPGAPAFDLAKGTVSN-PINTGSNGIVLVVT 596 Query: 578 NSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614 + + + L +++ + L +Y Sbjct: 597 DKQEPSADDIAKNFTATREGLLNERREEVFRLYLGTLTEKY 637 >gi|253700332|ref|YP_003021521.1| hypothetical protein GM21_1709 [Geobacter sp. M21] gi|251775182|gb|ACT17763.1| conserved hypothetical protein [Geobacter sp. M21] Length = 526 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 82/523 (15%), Positives = 184/523 (35%), Gaps = 38/523 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI VV+ + F+ +WG + +V K+ Sbjct: 1 MLGIMRKYKQSILIKIVFVVIVLSFVGTIFLVWGRGGEGSADGPGGYAATVDGTKISMDD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + Q G + E + +GL K + ++V + + +G++ + V Sbjct: 61 FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNKDEV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F + F +++ L + KE+ + + + + Sbjct: 121 AAEIAKIPSFQN-NGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKARNKVKEKATVT 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + Q + + ++ Y+ + V ++A L + + ++ ++ PE I+Y Sbjct: 180 DADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKY--------------FSPEIRTVEQLVFPNQK 281 L K+ ++ +E Q Y+KN ++Y + + + Sbjct: 240 LVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFSEVKDQATADAQKAKAAKEAYE 299 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDF 338 +A E + A+ G + L + + ++ L F+L K+G+ Sbjct: 300 KAAETANKFRSQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGEIELVTRAFAL-KQGEL 358 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + G + V + KPS +V+ + ++ K +E K+ + + LA G Sbjct: 359 GGPVETAKGIYLLQVLDKKPSVVPPLAQVRAQVEQKLLEVKGAEVAKKKAEEALQQLAKG 418 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 G G + + +L+ F Sbjct: 419 -------------GAAAKETGNFGYSPAG-AIPTVGTSPELMEAAFALTPASPVAKQPVK 464 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + V++K + A + +K+ K +E+ Sbjct: 465 VGERWYAVKLKNRVEAPTTDFAKASATIKQALLPKKQQDELDK 507 >gi|295698384|ref|YP_003603039.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola USDA] gi|291157251|gb|ADD79696.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola USDA] Length = 622 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 102/625 (16%), Positives = 246/625 (39%), Gaps = 35/625 (5%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINSWKQE----LGMISQ 69 K +++ + + G+ S ++ + +++ F ++++E L + Q Sbjct: 3 KAISLMIILSIFMTGVGSYFLGNENSKKYIIKINGEQIHQDQFDQAFQKEKYFFLKNMHQ 62 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + + + + + ++L+ L+ L Q+ +G++ ++ EI +F ++ Sbjct: 63 EFLWKDHDQDLENF-IRVQVLNKLIQETLLSQYSMKLGIKVSEDKIKEEIRNLSIFQ-EN 120 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF + S L R I+ K K V+ + + +F F+ Sbjct: 121 GKFDKRKYKSFLLRNQISGKTLSQEIKKNFLTKKVMQSYFLDEFLLPSESLEYAKFMFQK 180 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R + + L + + S + +++ Y D + + RISYI D+ + + + + Sbjct: 181 RKIQTLTLPILQYQKLQNVSEEEMEAYYQNYPDQFLSSRKARISYIKLDIESQYENLNLK 240 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL-- 307 +E Y+KNK+ + +P + + K+A+ + L +G F +LA++ Sbjct: 241 EEE-FEFYKKNKKFFTNPPKNYYSMIQLDSIKDAELMIEKLSQGFSFEELAKKFSTDPFS 299 Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + S+G KE++P V ++ +L K G + +I Y+I + +F Sbjct: 300 AKKNGSIGWIEKEFLPQVIVS---ANLKKIGQISKIIEFEGKYLIFRLDRSINKSYKTFL 356 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 E K +I + + +K+SEK + + + E + +S D + + +K + + D+ + Sbjct: 357 ESKSEIHDILLKSKSSEKFYKIREFILEEIKENSS-DLLLKTQKKFQMKIYRTDWFENEN 415 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDH-----TVALPDGSYMWVQIKESIPARDRKLE 480 + K+ + + +D + V + ++I++ + + Sbjct: 416 LPNSIDFQEVKKFIFSQNINQDFTQKNQNKKNIGIVEINKNLLFIIRIEDYCSEFVQPIH 475 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD---IGKNLGASLLTTNQINRM 537 V + K K E+V K + +L+ + +N + S I+R Sbjct: 476 LVKEKIFKLISFRKAYEKV-EKDGKFILDQLRNDQNVNKKTFFSEIGKISFQNEKTISRR 534 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNS--KVGPVQEKDKFI 591 + + F + Q F+ + + + + ++ K+T+ + +E + Sbjct: 535 EIDRSSF----LHQAFNMSISNRENPSYCMIRDGNQNLIIIKLTDIIREYPSTKEIELAS 590 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSV 616 S + + N +L+S+ L S + Sbjct: 591 SEVLRNFNFIVLESLFFNLFSHAKI 615 >gi|294788519|ref|ZP_06753761.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri ATCC 29453] gi|294483396|gb|EFG31081.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri ATCC 29453] Length = 609 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 95/648 (14%), Positives = 233/648 (35%), Gaps = 63/648 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I K T A++ L ++ + F+ +G S F S + +V +G Q + N+ Sbjct: 5 MFASIEKHRTT--AQVLLALIGISFIGFGASQFSFG-SNNQYIVKIGDQIITRYQLDNAV 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + A + + L++ A L + + +GL + I Sbjct: 62 R------------------ANQGATREAVFRQLMNRAYLTEGAKQLGLSISETELKQSIV 103 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + FH + KFS ++F LA G++E+++++ + L + G +G ++ + Sbjct: 104 NNKNFHDANGKFSTELFKQILASNGLSEQQFLESERETLLLESI-GKILGSNVVADSQVA 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R + + +N + + +A L ++++ + +Y P+ + ++ F Sbjct: 163 QFLNSTMAMRKIRNVGVNPQAFESKVKIDDASLKKFYDANQKSYTLPQAVQFEFVRFSPQ 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEADEAFQSLKKGK--- 294 +K +S++E++ + + S R + ++ P N+ +A E Q + K Sbjct: 223 TLAEKETVSDEEVKQA--QQDVQNSSTNKREIAHILIPFGSNKDKAKEEAQKIAKEAQAN 280 Query: 295 --KFIQLAEEQGKSLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KF +LA++ + ++ + + + + F + + G + V+ +FG Sbjct: 281 PDKFAELAKKYSQDSDSKDKSGIIGEFSAQGNLVNDAFKKAAFGV-ESGGVSDVVESNFG 339 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISR 406 Y I N+ + + ++ KA + + + L + S+ + + Sbjct: 340 YHIIRAKNLGNATASDDTAARD----AAKLKKAQQTYTKLREELSAAAFDDSGSLKKAAE 395 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHTVALPDGSYMW 465 + + A IP ++ +F D + DG+ + Sbjct: 396 KLGLTV----QTHSEWLTRDNAPAAKIPN--AVVDALFSDDVFDKKHNSEAITVDGTTWF 449 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V+ ++ + + V VK D+ ++A + +A +++ E GK L Sbjct: 450 VRATQTRQQTVQAFDAVKERVKGDFVRSESARLATDEAKKILAEL--------QAGKMLA 501 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 + +++ + F + + + P + + + L + Sbjct: 502 LNWSPVQEVSPEQAQGNFSPEAYANFMKTIPKNGKPAYVLIDNLGAPQLIEVQTVKQAAA 561 Query: 586 EKDKFISYLTQMM-----NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + +S + Q+M + ++ + L + + Sbjct: 562 ADVETLSTVKQIMLPVTERNAMAEAFMDNLSKIVKTEQGSEKVTDATE 609 >gi|254230430|ref|ZP_04923809.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25] gi|151937031|gb|EDN55910.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25] Length = 273 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 116/258 (44%), Gaps = 5/258 (1%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 + KI L ++ + F+ G+ + S +++ VG ++P F +++ E + + Sbjct: 2 SIAVKIILGLIILSFVFAGVGSYIVS-GNNNSAAKVGNTEIPRGEFEMAYQNERNRMQAQ 60 Query: 71 IGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 +G + ++ A K +LD +++ LDQ E +GL +V I P F Sbjct: 61 LGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRSMILDMPQFQS 120 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + +F +++ + L R G + + ++ + L R ++ + + + Sbjct: 121 -NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPGEVQAEGKLFT 179 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + R + I ++ + ++ + Q+++ DN+ PE +++YI ++++ Sbjct: 180 QTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELSAEALKEQVN 239 Query: 248 ISNDELQAEYEKNKEKYF 265 +S+ E++ Y+++ ++ F Sbjct: 240 VSDAEVKKYYDEHLKQIF 257 >gi|257455225|ref|ZP_05620460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter aerosaccus SK60] gi|257447187|gb|EEV22195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter aerosaccus SK60] Length = 622 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 98/637 (15%), Positives = 220/637 (34%), Gaps = 36/637 (5%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +E +R + W+ K LV+ +P I G + S + V V V ++ Sbjct: 1 MESLRNFLKGWMGKALLVLFLLPLAITGFESIVRSGDDPNAVAKVAELNVDNATLQTMIN 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + +++ ++ S L +++L NL+ + +G + + Sbjct: 61 NRRETLLEQVNG--DASLLNSDKLREQMLHNLIDRYLIINQANQLGFTVSDATITQMLMA 118 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F KFS+++F S L G+ +++ D + L T + + +D+ Sbjct: 119 EKTFQDASGKFSNELFASYLTSRGMTKEQLFDSVRQDLLVTAFSRGIINTGIFAQGSIDK 178 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 E+R V + L+ + + +++K + ++ + ++Y+ + + Sbjct: 179 LMSMQSESRPVQVLRLDWHSFAPQVQVTPQEIASYYQKNQATLKSSDMVDLTYLELNKNA 238 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKF 296 + ELQ +Y+ + + + ++ N +A SLK F Sbjct: 239 LP-VAAPTAQELQQQYQSYLKNSNNQTEYELAMILM-NGSQAQATLTSLKSKLDANQADF 296 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 LA++ + ++G ++ P D + K G T I ++GY + Sbjct: 297 AALAKQYSQDEGSKNDGGNIGPITQSMFPNDYDTIMTQIKTLKVGQVTSPIKTNYGYHLF 356 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + I + + + + Q+ K ++ ++ G ++ E++ R K+ Sbjct: 357 KLVKINGQTPPTIESLAPVLTEQIMAQKREAAYQDLIGKINNDAVAGATITELANRYKLT 416 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS-YMWVQIKE 470 + + + + ++ F +V + +W+Q Sbjct: 417 AKSIKNYPKTNNS-------SALSQPAIVAAAFEPLALQEGSVSVGIDVSDKVVWLQSTN 469 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 P++ E +K K A+ ++ + K+ + G Sbjct: 470 HRPSKLMTQAEAEPVIKAKLIEEK-AKSLALAEANAIAAKVKQANSIAA----AGVPFQD 524 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKV-TNSKVGPVQ 585 + R D++ D + FS P V P +G S +V V TN Sbjct: 525 LGIVTRQDSK---LSDDERAVAFSQPAVNNQLAVMTRPTMSGASVIVGGVITNDNAQITP 581 Query: 586 EKDKFISYL-TQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + + + + + + + + +AYLKS VTV Sbjct: 582 QVKQQTAQIVRENIGQSQFEDYLAYLKSITKVTVKPQ 618 >gi|197118887|ref|YP_002139314.1| hypothetical protein Gbem_2510 [Geobacter bemidjiensis Bem] gi|197088247|gb|ACH39518.1| conserved hypothetical protein [Geobacter bemidjiensis Bem] Length = 526 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 82/523 (15%), Positives = 182/523 (34%), Gaps = 38/523 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI VV+ + F+ +WG + + V K+ Sbjct: 1 MLGIMRKYKQSILIKIVFVVIVLSFIGTIFLVWGRGGDKSANGPAGYAAMVDGTKISMDD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + Q G + E + +GL K + +++ + + +G++ D V Sbjct: 61 FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDKDEV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F + F ++ + L + KE+ + + L + Sbjct: 121 AAEIAKIPSFQN-NGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKVKEKATVT 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L Q + + ++ Y+ + V ++A L + + ++ ++ PE I+Y Sbjct: 180 DADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKY--------------FSPEIRTVEQLVFPNQK 281 L K+ ++ +E Q Y+KN ++Y + + + Sbjct: 240 LVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFAEVKDQATADAQKAKAAKEAYE 299 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDF 338 +A E + + A+ G + L + + + L F+L K+ + Sbjct: 300 KAAETAKKFRAQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGETELVARAFAL-KQNEL 358 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + G + V + KPS +V+ + ++ K +E K+ Sbjct: 359 GGPVETAKGIYLLKVLDKKPSVVPPLAQVRAQVERKLLEVKGAEVAKKKA---------- 408 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 +E ++ G G + + +L+ F Sbjct: 409 ---EEALQQLSKAGAATKETGNFGYSPAG-AIPTVGTSPELMEAAFALTPANPVAKQPVK 464 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + V++K + A + +K+ K EE+ Sbjct: 465 VGERWYAVKLKNRVEAPTTDFAKASATIKQTLLPKKQQEELDK 507 >gi|68171424|ref|ZP_00544815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia chaffeensis str. Sapulpa] gi|67999166|gb|EAM85825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia chaffeensis str. Sapulpa] Length = 408 Score = 249 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 87/413 (21%), Positives = 184/413 (44%), Gaps = 17/413 (4%) Query: 5 IRKASRTWVAKIFLVVLFVP--FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62 I S+ + K L++L F+ +G S S + + +G +K+ + +++ Sbjct: 3 IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 EL I + + E+ + L+ L+ L +F + + L+ + I Sbjct: 63 ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-----NL 177 F ++ F F L+ G+ E+ YI+ K T ++ G + + Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYI 235 L+ Q + + R++D I ++ I+ P+ L + +E+ + N PE + I Y+ Sbjct: 183 LIKQILQNLHQARTIDVIEISPTT-NDISVPNIDELKKLYEEKRKSGNLTFPESRVIEYV 241 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 D + ++ +E+ + + ++ E R + LVF + EA+ A ++L +G Sbjct: 242 TIDHENFINQTNVTQEEIDNKIKADE----LDEQRDIFNLVFSTKNEAETALKALNEGTD 297 Query: 296 FIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F + +L +I+L + K +P+ + + +FSL K+G+ +P++H FG+ I + Sbjct: 298 FDSIVTNIAHTTLDNITLFNIVKNTLPN-DIRNQVFSL-KEGEISPILHSMFGWHIIKIK 355 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 NI T E+ + IA ++ KA++ + + + + + + GTS+ EI+ Sbjct: 356 NIHKISTKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAES 408 >gi|39997188|ref|NP_953139.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA] gi|39984078|gb|AAR35466.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA] gi|298506201|gb|ADI84924.1| conserved hypothetical protein [Geobacter sulfurreducens KN400] Length = 527 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 98/535 (18%), Positives = 197/535 (36%), Gaps = 44/535 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ V K+ V+ + F+ +WG + + SS V V R K+ + Sbjct: 1 MLGIMRKYKQSPVIKVVFGVIVLSFIGTIFLVWGKGEGKLTP--SSYAVKVDRTKISYEE 58 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ + + Q G + + + + + K+ LD LV GA + D+G++ V Sbjct: 59 FQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGIKVSKDDV 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA P F + FS + +V L I KE+ + L S Sbjct: 119 QQAIAAMPSFQ-VNGAFSFNQYVQVLKANRIAPKEFEEGQKDELMIKKAQDQIKSRATVS 177 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + R + ++ Y+ + V A ++ LT + K +++++ PE I+Y+ Sbjct: 178 DDEARELFRKRNDRLAISYVSYSPDDVKAEIKLTDQELTDFLAKNQNDFKTPEKISITYV 237 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK- 294 + D K +E+S ++QA Y+KN ++Y P + +++ E + K G+ Sbjct: 238 MVDP-LKVGGLEVSEADIQAWYQKNIDRYQGPAGIL---PLAEVKEKVREDARRFKAGQH 293 Query: 295 ----------------KFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKK 335 +A G + +L + + + L F L K+ Sbjct: 294 AYELAAAAINKNKATGDIGAVARALGAKTEETALFTAQQPAPALAGETELIRRAFIL-KE 352 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + G + + KP+ +++ + + + KA + K+ + + L Sbjct: 353 GELGGPVETKKGIYLIKIKERKPAEVPPLAQIRAQVEEKAKTAKAVDLAKKKAEEAQAKL 412 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G S + L D KG + + +L+ F Sbjct: 413 AKGDS----------TGLTLRDSGPFAFDAKGN-IPTVGASPELMEAAFKLTTAAPAPKE 461 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 ++ ++KE +K++ K +E +L + Sbjct: 462 PIRVGARWIAFRLKERTELNAANFAAQKEKIKQEILPRKQDDEYRKWIEELRSKA 516 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 66/508 (12%), Positives = 145/508 (28%), Gaps = 67/508 (13%) Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 + Y + D+ G +L + + V+ ++ N Sbjct: 52 TKISYEEFQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGI 111 Query: 207 DPSNAVLTQ------------------WFEKYKDNYRAPE-----YKRISYILFDVHEKE 243 S + Q + + K N AP+ K I + + Sbjct: 112 KVSKDDVQQAIAAMPSFQVNGAFSFNQYVQVLKANRIAPKEFEEGQKDELMIKKAQDQIK 171 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + +S+DE + + K ++ + + + E + ++ F+ + Sbjct: 172 SRATVSDDEARELFRKRNDRLA------ISYVSYSPDDVKAEIKLTDQELTDFLAKNQND 225 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTV 362 K+ IS+ + D K G + ++ + P+ + Sbjct: 226 FKTPEKISITYV----MVDP---------LKVGGLEVSEADIQAWYQKNIDRYQGPAGIL 272 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 EVK+ + R KA + E + ++R + Sbjct: 273 PLAEVKEKVREDARRFKAGQHAYELAAAAINKNKATGDIGAVARALGAK------TEETA 326 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 + A+ + +L+ R F + ++IKE PA L ++ Sbjct: 327 LFTAQQPAPALAGETELIRRAFILKEGELGGPVET--KKGIYLIKIKERKPAEVPPLAQI 384 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI---NRMDN 539 V++ KT K + KA + + +K G + G +L + + + Sbjct: 385 RAQVEEKAKTAKAVDLAKKKAEEAQAKLAK--------GDSTGLTLRDSGPFAFDAKGNI 436 Query: 540 ENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ-- 596 + + F PI G ++ F++ + Q Sbjct: 437 PTVGASPELMEAAFKLTTAAPAPKEPIRVGARWIAFRLKERTELNAANFAAQKEKIKQEI 496 Query: 597 --MMNKDLLDSVIAYLKSQYSVTVHDNL 622 D I L+S+ + ++ L Sbjct: 497 LPRKQDDEYRKWIEELRSKAKIEINPAL 524 >gi|320107420|ref|YP_004183010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] gi|319925941|gb|ADV83016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] Length = 661 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 95/639 (14%), Positives = 210/639 (32%), Gaps = 44/639 (6%) Query: 12 WVAKIFLVVLFVPFLIWGLSDAL--FSVSGSSTVVSVGRQKVPFSSF---INSWKQELGM 66 + + + + +++ + + +G SV + F QE+ Sbjct: 14 VLFAVIIGAAILSMIVYLVPGLYEGVTNNGDGVYASVHEPGLMGRIFGDTEQITTQEVSR 73 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 ++Q + L+++ ++ A DQ +GL V E+ + L Sbjct: 74 LAQSLQQRSGYPAFYLPLLERQAQQMKIAWAIEDQEASRLGLLVSDEDVSAELHQGQLGQ 133 Query: 127 G--KDNKF-SHDVFVSRLAREGI--NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 KF D + + ++ + + R + G+ ++ + Sbjct: 134 ILFPGGKFIGQDQYKQFVQNAAGVPTTADFEKEIKEDMERRRLRQFVTAGVNVNDNAVRS 193 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDV 239 A DY +++ V +++ L ++F K Y E ++++Y+ Sbjct: 194 AYLLSGTKVKFDYAMISPEDVKKNVTSTDSELQKYFNDNKARYAKAVAEARKVTYVAVAA 253 Query: 240 HEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEA 286 K ++S+ E+Q+ Y ++ ++Y E V ++ +A + Sbjct: 254 DSLPGGKPQVSDAEVQSYYSQHADQYKVEEQVRVRHILISVPPGADAKVDAAAKTKAQDL 313 Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++ G F LA+ LG + + +L K G + ++ Sbjct: 314 LTKIRAGGNFADLAKANSDDPGSKGTGGELGWVKSNGQMVPAFQTAAMAL-KAGQTSDLV 372 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FGY I + + + EV I + KA+ + L A +D Sbjct: 373 KTQFGYHIIQATERQDAHVKPLTEVASQIRPMLEQQKAAAAEQSFVTALSNEAAK-QGLD 431 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + + + + + G V + QLL F VA +G Sbjct: 432 KAAAAHHLTAQTTDYIAQDGV------VNGVADSSQLLQAAFAAKKG-DAPKAVATGEG- 483 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 Q+ + PA + + V D+ + + +K +L E +K+ + + Sbjct: 484 MAIFQVVDIQPAHAPTFDLWKSHVADDYAAEQVPTMMQAKLTKL-SERAKQLNDLKKAAV 542 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 + + T++ + R N + G + V + PI+ S V +V + + Sbjct: 543 EMNIPVKTSDLVGRDGNVPELGAMSGGASVAFTLAKGAVSAPIDASRSGAVLQVVDKQEP 602 Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ DK + L + ++ + L QY Sbjct: 603 TTEDIAKNFDKTKNDLLESKRNEVFALYMGTLMDQYKAK 641 >gi|225629761|ref|ZP_03787708.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591385|gb|EEH12478.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 445 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 211/449 (46%), Gaps = 24/449 (5%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 +Q + ++ R VD + + V I +P + L +E+ K ++ PEY+ YI Sbjct: 15 EQIYKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQ 74 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 E +I+IS++E+ E+ + K R + +F ++EA+ A ++ ++GK F Q Sbjct: 75 KYFEDQIKISDEEVDGIIEQQELK----NQRDIFNAIFSTKEEAETARRAFEEGKTSFEQ 130 Query: 299 LAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + EE GK+ L + + + +K+++P+ + + +F+L K G+ + V+ SFG+ I V + Sbjct: 131 IVEEFGKAKLEETRVNNITKDFLPE-DVREKVFAL-KVGEVSEVLASSFGWHIVKVESAH 188 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 ++KKDI + + K+ E+V + ++ + G+ ++EI + + Sbjct: 189 QISDEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGP 248 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 VD +GKD G V L+ +F ++ K + + D + + V+I + +P + + Sbjct: 249 VDASGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-AVVSVKIVDIVPPKLQ 303 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 EE + W++ E + ++ ++ ++ D+ + G L+ Q++R Sbjct: 304 SFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRN 359 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 + + + + + ++F+ PI+ N + V K +S G + D + Sbjct: 360 KVDQQNYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMI 419 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 L + +I+YL+S+Y V V+ ++ Sbjct: 420 -----SLKEQLISYLESKYKVEVNHAILD 443 >gi|225872709|ref|YP_002754166.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium capsulatum ATCC 51196] gi|225793467|gb|ACO33557.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium capsulatum ATCC 51196] Length = 660 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 237/669 (35%), Gaps = 67/669 (10%) Query: 1 MLEIIRKASRTW--VAKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVG---------- 47 M+ ++K +R V I + V V +I + + S S V ++G Sbjct: 1 MIRFLQKDNRFVKAVFFIIISVACVTMVITLVPGIFDTQSSSGNVYATIGYGGPLGRFMP 60 Query: 48 -RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 + + + +Q + Q+ G + + ++ L+ + Sbjct: 61 AQDTITMTE----VQQTAARMMQQQGLPDSM----MSFVIPQVGQGLIQQHVEMMEAHKL 112 Query: 107 GLEADHGRVWGEIARSPLFHG--KDNKF-SHDVFVSRLARE-GINEKEYIDHYTKMLSRT 162 GL A+ V + + K+ + ++ + +++ + Sbjct: 113 GLHANDEDVRHFLHTGMWGQVLFPNGKYIGDQAYAELISEHFNMTREKFESEVKNAIVED 172 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + + G + S + Q + Y VL++ + +P++A L +F++ Sbjct: 173 RLRSLVSGAVTVSPEQVKQYYLQQGLKINFQYAVLDSNALRQTINPTDAQLQTYFKQNAG 232 Query: 223 NY--RAPEYKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 Y PE + I YI F + ++++ E+Q Y ++++Y PE V ++ Sbjct: 233 RYAKAIPETRSIQYIAFQDSQIPGGAPQVTDAEIQQYYNAHQDQYKVPEEVKVRHILIQV 292 Query: 280 QK------------EADEAFQSLK--KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPD 322 + +A LK GK F +LA++ G + K+ + Sbjct: 293 PQGAPAATVAAAKTKAQSVLDQLKQANGKNFAELAKKYSDDPGSKDQGGELGWVKQGMTV 352 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + +IF++ G + ++ +G+ I V + + T + +V+ I + + K ++ Sbjct: 353 PAFDHAIFTMP-VGQISDLVRTQYGFHIIQVEDKHTAHTEALSDVRAQILSTLTQQKEND 411 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 ++L + A + + + + V +G + + +L+ Sbjct: 412 AAASYAQQLAKE-AAANGLQKTAAAHHLSVTTSDSVQ------QGANLPNLSDSSKLVTA 464 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 F + + DG + Q+ A + T + D++ + ++ K Sbjct: 465 AFQAKQG-AAPQVASTGDG-FAVFQVSNITAAHAPTFDAYKTQILSDYRDDQLPALLARK 522 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVK 561 N+L E +K + K + A+++T+ + R D + + ++ +F+ + Sbjct: 523 TNEL-AERAKNLNDLSKAAKLMNATVMTSGLVGRTDQVPEVGELEQVAPSLFTLQPGQI- 580 Query: 562 CFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYL----KSQ 613 I G S VV ++T + E ++ L + + ++ L + + Sbjct: 581 SKAINTGRSGVVAQITARQEPDAAEIAAHSEQTREQLLDQQRNQMFEVFLSNLLEKYQKE 640 Query: 614 YSVTVHDNL 622 + ++ Sbjct: 641 GRIRINAKA 649 >gi|57167705|ref|ZP_00366845.1| conserved hypothetical secreted protein, putative [Campylobacter coli RM2228] gi|57020827|gb|EAL57491.1| conserved hypothetical secreted protein, putative [Campylobacter coli RM2228] Length = 495 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 104/512 (20%), Positives = 191/512 (37%), Gaps = 36/512 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + + I++ + FL WG D F+++ SS+V VG +K+ ++ F Sbjct: 1 MLTWMQHHKKYLIVTIWISTIAFVGAGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q +Q +N E A+ +G++ L +LV L F +D+GL + V Sbjct: 59 VRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVENKLLLNFAKDLGLGSSENEVIQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +A + F F+ ++ L I KEY + + + +F + ++ Sbjct: 119 ALAETKAFQDPSGDFNKTIYYELLNANNITPKEYEKTLSNEIIIGKLEQIF--NLPQTDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF S++ L + L + + ++K++Y+ + IS Sbjct: 177 ELKMLGASYFMQDSLNIAKLEQD--KENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK 295 V +KI+ S E E NK KY + + D A LK K Sbjct: 235 PVD--MQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDVAKDYALAQLKNTANAK 292 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F++L E + K D ++ DV S AK GD GY+I ++ Sbjct: 293 FLELKEGKDKFQKDENITD------SDVYYPLEALSRAKNGDVLRPSEYQNGYIIIKLNK 346 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 P T +F E ++++ +A + ++E K+ E + +I Sbjct: 347 TNPVRTKTFDEAREELMPIYISEQAKKNLEEKAKQNLENFSG-------------TNIGF 393 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PA 474 D D K + L VF D V L + + +I + Sbjct: 394 VSRDTVRNDAKISNILNEAEFSYFLMNVFNSD---QNRSYVILNEDKAILYKINKQKLDM 450 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K ++ T + ++ +++K E +L Sbjct: 451 NPEKFQQYRTMLNQNLQSLKANEMKQELIEEL 482 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 90/265 (33%), Gaps = 43/265 (16%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 +SF+ KKD+A + + + L+E + I+ + ++ Sbjct: 264 GKIMSFEAAKKDVAKDYALAQLKNTANAKFLELKEGKDKFQKDENITDSDVYYPLEALSR 323 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G ++ E Y+ +++ ++ P R + Sbjct: 324 AKNGDVLRPSEYQ-----------------------------NGYIIIKLNKTNPVRTKT 354 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 +E ++ + + + + + KA Q + + G N + ++ + + I Sbjct: 355 FDEAREELMPIYISEQAKKNLEEKAKQNLENF--SGTNIGFVSRDTVRNDAKISNILNEA 412 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQM 597 + F VF+ + + I N +++K+ K+ EK ++ + L Q Sbjct: 413 EFSYFLMN-----VFNSDQN--RSYVILNEDKAILYKINKQKLDMNPEKFQQYRTMLNQN 465 Query: 598 M----NKDLLDSVIAYLKSQYSVTV 618 + ++ +I LK Y + + Sbjct: 466 LQSLKANEMKQELIEELKKTYPIKI 490 >gi|305433211|ref|ZP_07402367.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20] gi|304443912|gb|EFM36569.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20] Length = 495 Score = 234 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 103/512 (20%), Positives = 188/512 (36%), Gaps = 36/512 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V VG +K+ ++ F Sbjct: 1 MLTWMQHHKKYLVVTIWISTIAFVGAGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q +Q +N E A+ +G++ L +LV L F +D+GL + V Sbjct: 59 VRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVEDKLLLNFAKDLGLGSSENEVIQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +A + F F+ ++ L + KEY + + + +F + ++ Sbjct: 119 ALAETKAFQDPSGDFNKTIYYELLNANNMTPKEYEKTLSNEIIIGKLEQIF--NLPQTDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF S++ L + L + + ++K++Y+ + IS Sbjct: 177 ELKMLGASYFMQDSLNIAKLEQD--KENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK 295 V +KI+ S E E NK KY + + D A LK K Sbjct: 235 PVD--MQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDVAKDYALAQLKNIANAK 292 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 F++L E + K D ++ DV S K GD GY+I ++ Sbjct: 293 FLELKEGKDKFQKDENITD------SDVYYPLEALSRVKNGDVLRPSEYQNGYIIIKLNK 346 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 P T +F E K+++ + + ++E K+ E + +I Sbjct: 347 TNPVRTKTFDEAKEELMPIYISEQVKKNLEEKAKQNLENFSG-------------TNIGF 393 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PA 474 D D K + L VF D V L + M +I + Sbjct: 394 VSRDTVRNDAKISNILNEAEFSYFLMNVFNSD---QNRSYVILNEDKAMLYKINKQKLDM 450 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K ++ + ++ +++K E +L Sbjct: 451 NPEKFQQYRIMLNQNLQSLKANEMKQELIEEL 482 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 87/265 (32%), Gaps = 43/265 (16%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 +SF+ KKD+A + + + L+E + I+ + ++ Sbjct: 264 GKIMSFEAAKKDVAKDYALAQLKNIANAKFLELKEGKDKFQKDENITDSDVYYPLEALSR 323 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G ++ E Y+ +++ ++ P R + Sbjct: 324 VKNGDVLRPSEYQ-----------------------------NGYIIIKLNKTNPVRTKT 354 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 +E ++ + + + + + KA Q + + G N + ++ + + I Sbjct: 355 FDEAKEELMPIYISEQVKKNLEEKAKQNLENF--SGTNIGFVSRDTVRNDAKISNILNEA 412 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-----FISY 593 + F VF+ + + I N +++K+ K+ EK + Sbjct: 413 EFSYFLMN-----VFNSDQN--RSYVILNEDKAMLYKINKQKLDMNPEKFQQYRIMLNQN 465 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618 L + ++ +I LK Y + + Sbjct: 466 LQSLKANEMKQELIEELKKTYPIKI 490 >gi|121613493|ref|YP_001000390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167005333|ref|ZP_02271091.1| hypothetical protein Cjejjejuni_03670 [Campylobacter jejuni subsp. jejuni 81-176] gi|87249349|gb|EAQ72309.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni subsp. jejuni 81-176] Length = 496 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 198/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + ++++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWDEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLRNLKANELKQELVDEL 483 Score = 57.7 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + I N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|86153477|ref|ZP_01071681.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843203|gb|EAQ60414.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni HB93-13] Length = 496 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 197/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLRNLKANELKQELVDEL 483 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + I N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|157414981|ref|YP_001482237.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385945|gb|ABV52260.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747618|gb|ADN90888.1| Peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315931892|gb|EFV10847.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 327] Length = 496 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 197/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALIQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLRNLKANELKQELVDEL 483 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALIQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + I N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|153951630|ref|YP_001398361.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939076|gb|ABS43817.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter jejuni subsp. doylei 269.97] Length = 496 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 196/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y ++ + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVTTDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF + ++ + L + + ++K+NY+ + IS Sbjct: 177 ELKMLASSYFMQDVLSIAKIDYD--KKNIKINEEDLKKLWNEHKENYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK G + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGGVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKTKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINQQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMSSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 13/164 (7%) Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + Y+ V++ + P R++ EE +V + + + + + K ++ + +G + Sbjct: 336 NNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKTKNSLVNF--KGDDIGF 393 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + ++ + + D+E +F + VF+ + I N +++K+ Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMN----VFNTDQNS--SYVIINDNKAILYKINQQ 447 Query: 580 KVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 K+ Q K L + +L ++ LK Y + + Sbjct: 448 KLDMSSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKI 491 >gi|167950936|ref|ZP_02538010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 331 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 132/319 (41%), Gaps = 19/319 (5%) Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 + + ++L ++ G+ L Q D+GL + I F D F ++ Sbjct: 1 MFDNTRMRAEVLQEMIRGSLLRQVSHDMGLRVGDQLIRSAILGIEAFQ-VDGHFDKALYE 59 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + +G +E + + L + + + +++ R + R Y L Sbjct: 60 RGVRLQGTSEAGFEQRVRQALLSEQLSQAVQNSVFATQREIEELIRLRNQTRDAAYFTLP 119 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 + + ++ +++ +++ + APE +I Y+L +++ + L+ YE Sbjct: 120 VADFLSDEEIPIDLVESYYQSHQNEFLAPEQVKIEYLLLSAEAIAPTLDVQEEALRGYYE 179 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQSLKKGKKFIQLAE----E 302 + E Y PE R ++ ++ADEA Q ++ G+ F LA+ + Sbjct: 180 AHLESYGRPEQRRASHILVQVAQDADEATVAAAKEKIASLRQRVEAGEAFADLAKSESQD 239 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 G + + LG F K I D + + F+L K+G+ + + SFG+ + +S IK Sbjct: 240 PGSAAAGGDLGFFGKG-IMDPAFESATFAL-KEGELSEAVRSSFGFHLIRLSEIKSGDVK 297 Query: 363 SFQEVKKDIANQMRITKAS 381 SF+E ++++ + R + Sbjct: 298 SFEEARQEVESAYRKAEGR 316 >gi|86151641|ref|ZP_01069855.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841270|gb|EAQ58518.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 496 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 196/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T +++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMFEQNLRNLKANELKQELVDEL 483 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + I N +++K+ K+ Q K F L Sbjct: 416 AYFLMN----VFNTDQNS--SYVIINDNKAILYKINKQKLDMNSDKFEQYKTMFEQNLRN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|157804205|ref|YP_001492754.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str. McKiel] gi|157785468|gb|ABV73969.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str. McKiel] Length = 524 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 199/481 (41%), Gaps = 26/481 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ RK + +++ +I ++ F+ +G+ D L G V + + + F+ + Sbjct: 1 MLDNFRKTADSFIMRILFAMIAFAFIGFGIQDVLNGRRGGDVVTFSHAKNISQADFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D ++L LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTNLTDEEIAQLNIDNRVLKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F K F +F + ++E++Y+ ++ + + VG F + D Sbjct: 121 ESPVFKNKQGVFDIKIFKTYFRNSYMDEEKYLSNFKEKALKNIFVGTFAESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + ++ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPQDLQIPTPTDQQLKDFYQDNKTLFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ + ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGNQSFETVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G +++AE+ + +++ S+++ E ADSIF L++ P+ G Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYAELIEDKIIAENADSIFELSEGELSYPIEAGD 358 Query: 346 FGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 Y+I + +I+P F +K+ + ++ + +++ S E Sbjct: 359 KSYLILVELKSIQPVKIPEFDSIKEQVNKVWIKQNIADV---NLNMIKDLAKEYNSDQEN 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + K I + ++ +++ + + ++L +F + + D Y Sbjct: 416 IKELKATGIKISKKNYIRSEMENE----LTLTPEILLSIFNTKIGSNTP-VFQIGDAVYF 470 Query: 465 W 465 Sbjct: 471 A 471 >gi|198283164|ref|YP_002219485.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247685|gb|ACH83278.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 522 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 84/519 (16%), Positives = 187/519 (36%), Gaps = 48/519 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 M+E R R+WVAK +V++ + F++WG+S LFS S SS V +V QK+ ++F Sbjct: 1 MMETFRNFGRSWVAKSLMVLIALSFVLWGVSGYLFSGHSTSSVVATVDGQKISDAAFQKR 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K L S G ++ A ++L+ L+ L +GL+ + +I Sbjct: 61 MKDALARYSHIFGATTAAKMAADRSFGLEVLNGLIDNMLLGMEAGRLGLQVPDAALAKKI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 P F + FS +++ LA G+ ++ D + + + + S + Sbjct: 121 ESIPAFQ-EKGAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQVVPQVIATASKVEA 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + + E R V + + + A A P+ + ++ + D +R P ++ Y++ Sbjct: 180 TRIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVADYYHAHMDQFRLPAQVQVQYVVLGP 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295 + K SP + T V N + ++ K Sbjct: 240 KDFVAKSGAP----------TSPAVSSPPVATPHPAVAVNSSAENAFQAQVENFKDRLFS 289 Query: 296 ----FIQLAEEQGKSLSD---------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 +A+ G ++ + ++ G FS D++ + ++ + G + + Sbjct: 290 SPDGLNAVAKAYGLTVQESGVLTAGQVLTKGPFSDAKALDLAFSKAVLA----GKNSTAL 345 Query: 343 HGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + G ++ H+ + P V I ++ KA + ++ + L Sbjct: 346 TLANGDLLAVHLLHYTPGSVQPLSAVAGAITAKLSTEKAEQLAQKKAQALL--------- 396 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEV-AAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 +R+ K +++ + + + A+ + +L F P+ ++ + Sbjct: 397 -TAARQAKDMNMLTDHGAYPLHAYRDVTIRNALGLDKAVLEAAFTAPAPVGGVPSMDMVK 455 Query: 461 --GSYMWVQIKESIPARDRKLE-EVLTDVKKDWKTVKTA 496 Y + + +V ++ + + Sbjct: 456 TSSGYQIFAVTRVTAPAAAAINPKVTAQIRASLEEQRGR 494 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 84/258 (32%), Gaps = 20/258 (7%) Query: 380 ASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 A + + ++ L + ++ +++ + V +G G+ + P+ + Sbjct: 272 AENAFQAQVENFKDRLFSSPDGLNAVAKAYGL------TVQESGVLTAGQVLTKGPFSDA 325 Query: 439 -LLFRVFGKDDPLSKDHT-VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 L F K K+ T + L +G + V + P + L V + T K Sbjct: 326 KALDLAFSKAVLAGKNSTALTLANGDLLAVHLLHYTPGSVQPLSAVAGAITAKLSTEKAE 385 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-- 554 + KA L+ + K+ + + L + + + F+ Sbjct: 386 QLAQKKAQALLTAARQA-KDMNMLTDHGAYPLHAYRDVTIRNALG--LDKAVLEAAFTAP 442 Query: 555 GPVEMVKCFP-IENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIA 608 PV V ++ Y +F VT + + L + + L + + Sbjct: 443 APVGGVPSMDMVKTSSGYQIFAVTRVTAPAAAAINPKVTAQIRASLEEQRGRLLSTAYLK 502 Query: 609 YLKSQYSVTVHDNLIQRY 626 L+ V +++ + + Sbjct: 503 DLREHARVKINNAQLAQI 520 >gi|148926659|ref|ZP_01810340.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845178|gb|EDK22273.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 496 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 97/514 (18%), Positives = 195/514 (37%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEAITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + S AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ + + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 + ++ L VF D V + D + +I + Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLSKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + +T + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + + N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|205355536|ref|ZP_03222307.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346770|gb|EDZ33402.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 496 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 96/514 (18%), Positives = 196/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ + + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 + ++ L VF D V + D + +I + Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + +T + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + + N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|255021292|ref|ZP_05293340.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus ATCC 51756] gi|254969155|gb|EET26669.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus ATCC 51756] Length = 516 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 77/415 (18%), Positives = 147/415 (35%), Gaps = 24/415 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59 ML+ RK S++W AKI L V+ + F++WG+S LFS SG V V K+ + F Sbjct: 1 MLDAFRKLSQSWAAKIVLAVIALSFVLWGVSGYLFSNDSGEQVVAKVDGDKISAAIFQQR 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q G ++ A+ +L+ L+ L +GL+ + +I Sbjct: 61 LHDAREHYAQVFGPEAAAQMAKDPSFAPDVLNGLIDNLLLAHEARKLGLQVPDSALAQKI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F K KFS + L G+ ++ + + + S Sbjct: 121 EGISAFADK-GKFSRAKYQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVASRKDA 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + A + E R + + R A P++A + ++++++ +Y P + Y+ F Sbjct: 180 ESAWSWSQEYRDARVVQIPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTFGP 239 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKKFIQ 298 + + S A SPE+ Q+ F ++ +D Sbjct: 240 KDF-DQSHGSGTAATASASSPAPSQGSPELAFESQIENFKDKLFSDS--------GSLAG 290 Query: 299 LAEEQGKSLSDI---------SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 +A+ G + D S G F+ D++ + ++ + Sbjct: 291 VAKAYGLKIEDSGTLTAGKTPSSGVFADPKALDLAFSKAVLAGKNSSALRLPNGDLLAVH 350 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 + H P + Q V+ +IA + KA K + L + ++ Sbjct: 351 LLH---YTPPRSQDLQAVRSEIAATLAERKARRLAKARAQELLDAAEKSRDPKDL 402 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 82/251 (32%), Gaps = 17/251 (6%) Query: 383 KVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + + ++ L + S+ +++ + D + G Sbjct: 269 AFESQIENFKDKLFSDSGSLAGVAKAYGLKIEDSGTLTAGKTPSSGVFADPKALDLAFSK 328 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 V + LP+G + V + P R + L+ V +++ K + Sbjct: 329 AVLA----GKNSSALRLPNGDLLAVHLLHYTPPRSQDLQAVRSEIAATLAERKARRLAKA 384 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561 +A +L+ K ++ +D+ + + + R ++ +F P + Sbjct: 385 RAQELLDAAEKS-RDPKDLDPDGSYPEKRYSDLARHSAAG--LDPSLMNAIFLAPAPEGQ 441 Query: 562 CFP----IENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 P +E + Y ++ VT + + L + + L + L+ Sbjct: 442 GAPSFGMVEQKVGYALYAVTRVILPNQALLNPSVTQEIQRSLEEQRARLLTTGYLQALRH 501 Query: 613 QYSVTVHDNLI 623 + + +H++++ Sbjct: 502 KAHIRIHEDVL 512 >gi|315926808|gb|EFV06182.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 496 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 96/514 (18%), Positives = 196/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVIADKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ + + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 + ++ L VF D V + D + +I + Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483 Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + +T + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + + N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|307610560|emb|CBX00148.1| hypothetical protein LPW_18931 [Legionella pneumophila 130b] Length = 316 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 130/317 (41%), Gaps = 19/317 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++ Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q + + A L ++L+ +++ Q G E + I Sbjct: 61 R--RTRAQQDLPQMTA---ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F +D FS + L+ + + + + F+G + + Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIK 174 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + R Y + R DY+ + + A S + ++ ++ + E + Y+L +H Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQ 288 + + +I+IS DE+++ YE+NK Y +P V ++F +++ADE + Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294 Query: 289 SLKKG-KKFIQLAEEQG 304 LKK ++F + + Sbjct: 295 DLKKHPEQFDKYVASKS 311 >gi|23010100|ref|ZP_00050908.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 287 Score = 229 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56 ML+ IR AS+ W+ K+ L V+F FLI G++ + F SSTV +VG+ + Sbjct: 1 MLQSIRNASQHWLGKVVLTVIF-TFLIAGVAIFGVEEFFRGGSSSTVATVGKTPISAEEV 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ +L ++ + ++ARS+GL++++L L++ A LDQ D+GL V Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARSLGLERQVLSQLITEAALDQKTTDLGLAVSDAAVL 119 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I P F + F +F L R G+NE ++ +++R + V + Sbjct: 120 RAIQDEPSFKNANGTFDRVLFYQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + R+ E RS + L I DPS L+ +++ K ++RAPEY+R+ ++ Sbjct: 180 AIREAVHRYSTERRSAAVLTLAPSAAGEIPDPSEEELSAYYDNNKASFRAPEYRRLKLLV 239 Query: 237 FDVHEKEKK 245 D + + Sbjct: 240 LDPRDSKPS 248 >gi|283956103|ref|ZP_06373590.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 1336] gi|283792423|gb|EFC31205.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 1336] Length = 496 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 96/513 (18%), Positives = 196/513 (38%), Gaps = 39/513 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNAD---QNSSYVIINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 K ++ T ++++ + +K E ++ Sbjct: 450 DMNSDKFKQYKTMLEQNLQNLKANELKQELVDE 482 >gi|86149807|ref|ZP_01068036.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596914|ref|ZP_01100150.1| putative peptidyl-prolyl cis-trans isomerase D homolog [Campylobacter jejuni subsp. jejuni 84-25] gi|218562333|ref|YP_002344112.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839625|gb|EAQ56885.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190603|gb|EAQ94576.1| putative peptidyl-prolyl cis-trans isomerase D homolog [Campylobacter jejuni subsp. jejuni 84-25] gi|112360039|emb|CAL34831.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925950|gb|ADC28302.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315929133|gb|EFV08360.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni 305] Length = 496 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 97/514 (18%), Positives = 198/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + ++ Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 + ++ L VF D V + D + +I + Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483 Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + + N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|283953940|ref|ZP_06371469.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 414] gi|283794545|gb|EFC33285.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp. jejuni 414] Length = 496 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 98/514 (19%), Positives = 198/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKISFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G++ L +LV L F +D+G++A+ + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIENIALSSLVEDKLLLNFAKDLGVDANENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNVNNLTPKDYETQLANEVIVGKLDHIF--NIPNKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMRDALSIAKIDYD--KKNIKINEEDLKKLWSEHKEDYKTKKMYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 P----SSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKSVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + + GY+I + Sbjct: 291 AKFLDLKNGKDSFQKDHNISE------SDVYYPIDLLNKAKNGDVLRPVLYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E + ++ +A + ++E K G S+ +SR + Sbjct: 345 NKVDPIRNKTFEEARDEVLPIYLSEQARKNLEEKAKN-SLANFKGDSIGFVSRDSSRENA 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 + + L VF D V + D + +I + Sbjct: 404 KV-----------SDNMLNDSEFSYFLMNVFNTD---QNSSYVIINDSKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T +K++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLKQNLQNLKVNELKQELVDEL 483 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 101/262 (38%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL + Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKSVANAKFLDLKNGKDS 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + Y LL + D L + Y+ V++ + P R++ EE Sbjct: 303 FQKDHNISESDVYYPIDLLNKAKNGDVLRP-----VLYNNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA + + + F + + ++ N +N + Sbjct: 358 ARDEVLPIYLSEQARKNLEEKAKNSLANFKGDSIGFVSRDSSRENAKVSDNMLN-----D 412 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN- 599 F Y ++ VF+ + I N +++K+ K+ +K +++ + L Q + Sbjct: 413 SEFSYFLMN-VFNTDQNS--SYVIINDSKAILYKINKQKLDMNSDKFEQYKTMLKQNLQN 469 Query: 600 ---KDLLDSVIAYLKSQYSVTV 618 +L ++ LK Y + + Sbjct: 470 LKVNELKQELVDELKKIYPIKI 491 >gi|91204986|ref|YP_537341.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii RML369-C] gi|91068530|gb|ABE04252.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii RML369-C] Length = 519 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 91/482 (18%), Positives = 195/482 (40%), Gaps = 30/482 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK + +++ ++ ++ F+ +G+ D L G V + + F+ + Sbjct: 1 MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS+++G + E + +D +IL LV LD + + V + Sbjct: 61 SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F F +F + +E++Y+ ++ + + G F+ + D Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + +N ++ P I PS+ L +++ K ++ PE + SYI Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 +KKI+++ +EL Y +NKE++ E +++ N + A Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 + G +++AE+ +++I+ S++ + I D ADSIF L++ P+ Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359 Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y V+ + +I P+ F +K+ I + ++ + K L + D Sbjct: 360 DKSYLVLVELKSINPAKIPEFDSIKEQINSTWIKQYLADLNIKIMKDLAKE-------DN 412 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 +K + + + +++ ++ ++L +F + + D Y Sbjct: 413 FDTEDKTSNAKIRNKTYIRSEMENDQMLT----PEILLSIFNTQIGANTP-VFQVGDDLY 467 Query: 464 MW 465 Sbjct: 468 FA 469 >gi|57236997|ref|YP_178798.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter jejuni RM1221] gi|57165801|gb|AAW34580.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter jejuni RM1221] gi|315058157|gb|ADT72486.1| Peptidyl-prolyl cis-trans isomerase ppiD [Campylobacter jejuni subsp. jejuni S3] Length = 496 Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 97/514 (18%), Positives = 196/514 (38%), Gaps = 39/514 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 PVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + S AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ + + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI- 472 + ++ L VF D V + D + +I + Sbjct: 404 KV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKINKQKL 449 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 K E+ T ++++ + +K E ++L Sbjct: 450 DMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 483 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLSKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + +T + + KA ++ + +G + + ++ + + D+E Sbjct: 358 AREEVLPMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 415 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + + N +++K+ K+ Q K L Sbjct: 416 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 469 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 470 LKANELKQELVDELKKIYPIKI 491 >gi|108758423|ref|YP_630863.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622] gi|108462303|gb|ABF87488.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622] Length = 524 Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 91/532 (17%), Positives = 194/532 (36%), Gaps = 66/532 (12%) Query: 10 RTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQEL 64 R + +F++ + V F + +G + F +G +T V SV +++P F +W Q++ Sbjct: 10 RKVASLLFIIGIAVVFTLQFGPGSSGFGATGGATAPGSVASVNGKEIPLRDFAAAWAQQM 69 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + + G V AR G+ ++LD LV+ L Q E G+ A + I ++ Sbjct: 70 SFLRSQ-GSPVPESLARQFGMHNQVLDRLVNTELLAQAAERHGIAASDDELRKLIHQNTD 128 Query: 125 FHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 F KD +F + + L + +++ + L+ ++ + G S+ + Sbjct: 129 FQ-KDGQFDFERYQQVLRDFYRKSPQDFEAELRRQLAAQKMMDVVRGNAVVSDDEVRARF 187 Query: 184 RFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 V + P+ A L +W + + Sbjct: 188 EKEGNQAKVVFARFLPAMYADKVPSPTAAQLAEWKKAH---------------------- 225 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQSL 290 +++ +E N+ Y PE Q++ ++A + + Sbjct: 226 -------EKDIKEYFEANRFVYQQPERIRARQVLVKLPPEATADQKKAALEKAQALRKEI 278 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + GK F Q+A + + LG + + +LAD+ F+L K+G+ T + F Sbjct: 279 EGGKDFAQVARDSSEDPGSKARGGDLGWVERGSW-EPALADAAFAL-KQGEVTQPVETKF 336 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G + V + + ++V+ +IA + + +A ++ + + ++ G + + Sbjct: 337 GVHLVKVDEKQAAQDKKLEDVQDEIATTLYKQDRAKQQARAEAEKALASAKAGQDLKTLF 396 Query: 406 RREKIVSIDL--------PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 EK L V+ +G+ V + +L+ F P D Sbjct: 397 PPEKEQPALLRFETETRPEAVETDSFTAEGEAVPHLGPAPELVKAAFAVSAPQPLDSVFP 456 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 L +G ++ Q+ E ++ +++ + K E S L + Sbjct: 457 LGEG-FVVAQVVERQKPDAEGFDKRKEELRAQARQAKQIELTESFLKALREQ 507 Score = 61.5 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 29/273 (10%) Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + E + L + + G +++R G +G A+ Sbjct: 259 ATADQKKAALEKAQALRKEIEGGKDFAQVARDSSEDPGSKARGGDLGWVERGSWEPALAD 318 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW-KTVK 494 L + +K V++ E A+D+KLE+V ++ K + Sbjct: 319 AAFALKQGEVTQPVETKF--------GVHLVKVDEKQAAQDKKLEDVQDEIATTLYKQDR 370 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDI-------------GKNLGASLLTTNQINRMDNEN 541 ++ ++A + L +K G++ + + + T+ Sbjct: 371 AKQQARAEAEK-ALASAKAGQDLKTLFPPEKEQPALLRFETETRPEAVETDSFTAEGEAV 429 Query: 542 KFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLT 595 G + + F+ G +VV +V + + K++ + Sbjct: 430 PHLGPAPELVKAAFAVSAPQPLDSVFPLGEGFVVAQVVERQKPDAEGFDKRKEELRAQAR 489 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 Q +L +S + L+ Q SV + I + Sbjct: 490 QAKQIELTESFLKALREQGSVVTNTAAIDSVVG 522 >gi|315124196|ref|YP_004066200.1| hypothetical protein ICDCCJ07001_630 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017918|gb|ADT66011.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 454 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 92/479 (19%), Positives = 182/479 (37%), Gaps = 38/479 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ + FL WG D F+++ SS+V +VG +K+ FS F Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++Q L +Q + E A +G+ L +LV L F +D+G+ + + Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A + F F+ ++ L + K+Y + + +F + + Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF--NIPSKDE 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L YF ++ ++ + L + + ++K++Y+ + IS Sbjct: 177 ELKMLASSYFMQDALSIAKIDYD--KKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFL 234 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 V +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 235 SVS----NEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 KF+ L + D ++ DV + + AK GD + GY+I + Sbjct: 291 AKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKL 344 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + P +F+E ++++ +A + ++E K G + +SR S+ Sbjct: 345 NKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSSRESV 403 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 L ++ L VF D V + D + +I + Sbjct: 404 KL-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVIINDNKAILYKINKQK 448 Score = 43.4 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 56/147 (38%), Gaps = 6/147 (4%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 302 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 303 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 357 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVL 508 +V + + + + + KA ++ Sbjct: 358 AREEVLPMYLSEQARKNLEEKAKNSLV 384 >gi|157827683|ref|YP_001496747.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU 85-389] gi|157802987|gb|ABV79710.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU 85-389] Length = 519 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 91/482 (18%), Positives = 195/482 (40%), Gaps = 30/482 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK + +++ ++ ++ F+ +G+ D L G V + + F+ + Sbjct: 1 MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS+++G + E + +D +IL LV LD + + V + Sbjct: 61 SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F F +F + +E++Y+ ++ + + G F+ + D Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + +N ++ P I PS+ L +++ K ++ PE + SYI Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 +KKI+++ +EL Y +NKE++ E +++ N + A Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 + G +++AE+ +++I+ S++ + I D ADSIF L++ P+ Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYA-DLIEDKIIAENADSIFELSEGELSYPIEAE 359 Query: 345 SFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y V+ + +I P+ F +K+ I + ++ + K L + D Sbjct: 360 DKSYLVLVELKSINPAKIPEFDIIKEQINSTWIKQYLADLNIKIMKDLAKE-------DN 412 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 +K + + + +++ ++ ++L +F + + D Y Sbjct: 413 FDTEDKTSNAKIRNKTYIRSEMENDQMLT----PEILLSIFNTQIGANTP-VFQVGDDLY 467 Query: 464 MW 465 Sbjct: 468 FA 469 >gi|118581468|ref|YP_902718.1| hypothetical protein Ppro_3065 [Pelobacter propionicus DSM 2379] gi|118504178|gb|ABL00661.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379] Length = 527 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 106/528 (20%), Positives = 199/528 (37%), Gaps = 38/528 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSF 56 ML++IR+ ++ + K+ VV+ + F+ + S S + V R K+ F Sbjct: 1 MLDLIRQKKQSIIIKVVFVVIVLSFIGTMFLVWGKGSDGSGSSMAYAAKVNRHKISLEEF 60 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N++++ + Q G + E +++GL K L++L+ A + + + +G+ A V Sbjct: 61 QNAYQRMRNIYQQIYGQSLTPEIEKTLGLKKAALNSLIDTALILKEAKKMGITASKDEVS 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 G IA P+F KD FS D++ L I KE+ + + L + + S+ Sbjct: 121 GAIAAMPMFQ-KDGVFSFDLYQQLLKSNRITAKEFEEAQQRELILKKTRQAIINKVAVSD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 R + ++Y+ V P+ A L ++ +K +D +R E ISY+L Sbjct: 180 QEALDLFRKENDRIELEYLSYGPADVMGEIRPTEAELKEFLQKNQDRFRTAEKAEISYVL 239 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPN-----QK 281 D + + ++ DE+Q Y+KN +++ E E L + Sbjct: 240 IDPASQAARQSLTEDEIQTFYQKNIDRWQGKDGILPLADVRERVRAEALKQKAARQAFEL 299 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISL---GSFSKEYIPDVSLADSIFSLAKKGDF 338 AD F+++K G +A + L + + +L F L K+G+ Sbjct: 300 AADTLFKNIKSG-DLNLIAAKLNLKPQQTPLFSADASPPALAGETALIRKAFEL-KQGEL 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + G I V PS E+K + + KA + + ++ LA Sbjct: 358 GGPVETGRGIYIVKVRQRIPSQVRPLNEIKAQVEQSFKAAKAVDLARGKAEQAARQLAAK 417 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 + G KG +V +I L+ F Sbjct: 418 KPLSS------------QSTSSFGFSAKG-DVPSIGNAPDLMEAAFRLTSASPAATAPFK 464 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + +++K A + + T +K+ VK E +++ QL Sbjct: 465 VGDRWYAIRLKSRSEAPRAEFDRTKTAIKQGMLPVKQQEALTTWVKQL 512 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 3/123 (2%) Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 L +V V+ + K A + A + + K G + I L T + Sbjct: 273 ILPLADVRERVRAEALKQKAARQAFELAADTLFKNIKSG-DLNLIAAKLNLKPQQTPLFS 331 Query: 536 RMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + G I + F + P+E G + KV V+ ++ + + Sbjct: 332 ADASPPALAGETALIRKAFELKQGELGG-PVETGRGIYIVKVRQRIPSQVRPLNEIKAQV 390 Query: 595 TQM 597 Q Sbjct: 391 EQS 393 >gi|239948494|ref|ZP_04700247.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922770|gb|EER22794.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 524 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 202/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L + + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIITFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P++ L +++ K ++ PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTSFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ + ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGNQSFESVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + +++ S+++ E ADSIF L++ G+ + I Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYAELIEDKIIAENADSIFELSE-GELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKVWIKQNIADV---NLKIIKDLAKEYNSEQE 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + ++ +++ + ++L +F + + D Y Sbjct: 415 NIKELKANGIKISKKNYIRSEME----NDLTLAPEILLSIFNTKIGSNTP-VFQVGDEVY 469 Query: 464 MW 465 Sbjct: 470 FA 471 >gi|157826283|ref|YP_001494003.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str. Hartford] gi|157800241|gb|ABV75495.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str. Hartford] Length = 524 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 197/481 (40%), Gaps = 26/481 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLAINAISKQTGTSLTDEEIAQLNIDNQILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F F + I+E++Y+ ++ + + +VG F+ N + D Sbjct: 121 ESPVFQNEQGAFDIKNFKAYFRNSYIDEEKYLLNFKEKALKNILVGSFIESFYVPNAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKVFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFELVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G +++AE+ + +++ S+++ E ADSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIEAED 358 Query: 346 FGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 359 KSYLILVELKSIQPTKIPEFDTIKEQVNKVWIKQNIADV---NLKIIKDLAKEYNSDQEN 415 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + K I + + ++ K + ++L +F + + D Y Sbjct: 416 IKELKATGIKISKKSY----IRSKMENDLTLTPEILLSIFNTKIGSNTP-IFQVGDEVYF 470 Query: 465 W 465 Sbjct: 471 A 471 >gi|114321433|ref|YP_743116.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1] gi|114227827|gb|ABI57626.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1] Length = 484 Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 87/512 (16%), Positives = 181/512 (35%), Gaps = 38/512 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR A + WVA ++V+ +PF++ G + F+ V V ++ Sbjct: 1 MLEAIRSAVKGWVAWAVVIVISLPFIVVG-GYSYFAGDDGRVVAEVEGVEITREQVAERA 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +Q+ + + G + + L ++ D L+ A L + D L V I Sbjct: 60 RQQQRQLEEFFGD-LGAAGVDESTLRREARDGLIEEALLHVLVTDGNLRVGDRAVAQRIR 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + +FH + FS + + L+ + +Y + + L G + Sbjct: 119 QQDIFH-QGGTFSMERYQQLLSANRLTPDQYEEMVRRDLLVEQFQRAVTGSALVRDWDTA 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + R + Y+V++ P S+A + +E+ + Y AP R+ YI Sbjct: 178 RLAALDRQQRDIHYLVVSADEAPD--AVSDAAVQAHYEENAERYTAPRQVRLEYIELHQD 235 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E D+ +E ++ + + + A L + Sbjct: 236 ELAP------DDSTRFFELTED---------AANVAYEDPDSLQSAADLLGVELSYSDWV 280 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 E G + G + + + + + +D + + + GS ++ V +++ + Sbjct: 281 PEDGSAE-----GLWGRPEVVEAAFSDDVLEFGYNSELIEL--GSGHALLLRVDDVREAE 333 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 + EV +I ++ + + + + LE +A G M E++ RE + +D Sbjct: 334 PLGLDEVADEIRRELAREQGRLQARNLGELLEREIAAGAEMAELAEREGLEVRSAEGLDR 393 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV---ALPDGSYMWVQIKESIPARDR 477 + Q++ R F P+ +V ++ G Y VQ+ Sbjct: 394 GT--------LSDAVPTQVVDRAFRLPRPVDGQPSVGGTSVQGGDYAVVQVVAVTDGDTD 445 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 +E + D + V + E + L E Sbjct: 446 LGDEEREHWRADLRQVFSQSEWQALMAGLREE 477 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 30/256 (11%), Positives = 93/256 (36%), Gaps = 14/256 (5%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 +++ ++ + S+ + ++ ++L D+ +D + + Sbjct: 235 DELAPDDSTRFFELTEDAANVAYEDPDSLQSAAD---LLGVELSYSDWVPEDGSAEGLWG 291 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 P + F + + + L G + +++ + A L+EV +++++ Sbjct: 292 RPEVVEAAFSDDVLEFGYN-SELIELGSGHALLLRVDDVREAEPLGLDEVADEIRRELAR 350 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 + + + +L+ G ++ + G + + ++R + + + Sbjct: 351 EQGRLQARNL-GELLEREIAAGAEMAELAEREGLEVRSAEGLDR-GTLSDAVPTQVVDRA 408 Query: 553 FSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLD 604 F P + + G Y V +V G +E++ + + L Q+ ++ Sbjct: 409 FRLPRPVDGQPSVGGTSVQGGDYAVVQVVAVTDGDTDLGDEEREHWRADLRQVFSQSEWQ 468 Query: 605 SVIAYLKSQYSVTVHD 620 +++A L+ + V + D Sbjct: 469 ALMAGLREEMDVKLRD 484 >gi|322419880|ref|YP_004199103.1| hypothetical protein GM18_2369 [Geobacter sp. M18] gi|320126267|gb|ADW13827.1| hypothetical protein GM18_2369 [Geobacter sp. M18] Length = 525 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 94/523 (17%), Positives = 191/523 (36%), Gaps = 40/523 (7%) Query: 1 MLEIIRKASRTWVAKIF-----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML I+RK ++ + KI L + FL+W G S +V K+ Sbjct: 1 MLGIMRKYKQSIIIKIVFVVIVLSFIGTIFLVW-GKGGSDGQGGKSYAATVNGTKISLDE 59 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F S+ + G+ Q G + E + +G+ K +++LV + + +GL+A V Sbjct: 60 FQKSYYRTRGLYEQIYGRSLTPEMEKQMGIKKLTINSLVDNVLIHAEAKKMGLKASKEEV 119 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EIA+ P F K+ F ++ L I K++ + + + + Sbjct: 120 AAEIAKIPAFQ-KNGAFDFGIYQQTLKANRITPKDFEESQEQEMLLQKARNKVKDAAAVT 178 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + A + + + Y+ + V ++ LT + + +++ ++ PE ++Y Sbjct: 179 DAEVKAAFKKQKDKIDLAYVSFSPADVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVAYA 238 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------PEIRTVEQLVFPNQKEADEAFQ 288 L + K+ ++ +E+Q Y+KN ++Y E++ QK A EA++ Sbjct: 239 LVSPAQFAAKVSVTPEEVQTYYQKNIDRYQGKGGILPFAEVKEQASADAQKQKGAKEAYE 298 Query: 289 SLKKG-KKFIQLAEEQGKSLSDISLGSFSK---------EYIPDVSLADSIFSLAKKGDF 338 KF A+ + S S + + + + +L K+G+ Sbjct: 299 KAADAVNKFRASADIDAAAASLGSKVEKTPLFSSKAPAAGLVGENEVVARALAL-KQGEL 357 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + G + V + KP+ +++ + + KA++ K+ + + LA G Sbjct: 358 GGPVETAKGIYLVKVLDKKPAAVPPLSQIRGAVEAKAVEVKAADLAKKKAEEALQQLAKG 417 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 + E G G V I +L+ F + P Sbjct: 418 AAAKE--------------TGSFGYAATG-AVPTIGTSPELMEAAFALNAPNEAAKQPFK 462 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + V++K A L + +K K E + Sbjct: 463 VGDRWYAVKLKSRTEAPLTDLAKDSGTIKAALLPKKQQEALDK 505 >gi|229587184|ref|YP_002845685.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5] gi|228022234|gb|ACP53942.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5] Length = 524 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 87/482 (18%), Positives = 200/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFVRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ +IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVNYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKNYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + +++ S+++ E ADSIF L++ G+ + I Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + + ++ + + ++L +F + + D Y Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469 Query: 464 MW 465 Sbjct: 470 FA 471 >gi|238650847|ref|YP_002916702.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str. Rustic] gi|238624945|gb|ACR47651.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str. Rustic] Length = 524 Score = 222 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 199/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + +++ S+++ E ADSIF L++ G+ + I Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + + ++ + + ++L +F + + + Y Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGNEVY 469 Query: 464 MW 465 Sbjct: 470 FA 471 >gi|15604653|ref|NP_221171.1| hypothetical protein RP822 [Rickettsia prowazekii str. Madrid E] gi|3861348|emb|CAA15247.1| unknown [Rickettsia prowazekii] gi|292572472|gb|ADE30387.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia prowazekii Rp22] Length = 528 Score = 222 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 91/485 (18%), Positives = 207/485 (42%), Gaps = 30/485 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK S +++ ++ ++ F+ +G+ D L S V+ + + F+ + Sbjct: 1 MLDNIRKTSDSFIMRVLFAIIAFAFVGFGIKDILNVRRNSDIVIFSHAKNISKQDFLQAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS+++G + E + +D +IL L+ LD + L+ V + Sbjct: 61 SLEINAISKQMGKSLIDEEITQLNIDNRILKRLIYNNILDYLVSYYDLDLGDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F ++F + I E++Y+ ++ + + + +V F + D Sbjct: 121 ESPMFKNEQGVFDIEIFKTYFKNAYIGEEKYLLNFKEKVLKNLIVSTFAKSFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I L+ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + KI ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDF--KISVTQDELLEFYNENKDEFGDQSFEAVQTQLHDLLRAKKIDILNMELAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPD--VSLADSIFSLAKKGDFTPV 341 + G ++++E+ + +++ S+++ + D ADSIF L++ P+ Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYVSYAELIGDNIMADNIAESADSIFELSEGELSYPI 358 Query: 342 IHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 Y+I + +I+P+ F +K + N++ I + E V +K +++ + Sbjct: 359 EAEDKSYLILVELKSIQPAQIPKFNAIKDQV-NKVWIKRNIEDVN--FKMIKDLAKEYNA 415 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E + V I + ++ +++ + ++L +F + + D Sbjct: 416 DPEQIKDFNAVGIKISKKNYIRMEIE----NDLTLTPEILLSIFNTKIGSNTP-VFRVGD 470 Query: 461 GSYMW 465 Y Sbjct: 471 IVYFA 475 >gi|34581133|ref|ZP_00142613.1| hypothetical protein [Rickettsia sibirica 246] gi|28262518|gb|EAA26022.1| unknown [Rickettsia sibirica 246] Length = 524 Score = 222 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 87/482 (18%), Positives = 201/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ +IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ ++D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIKSFYVPKAMID 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + +++ S+++ E ADSIF L++ G+ + I Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKWNIADV---NLKIIKDLAKEYNSDQE 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + + ++ + + ++L +F + + D Y Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469 Query: 464 MW 465 Sbjct: 470 FA 471 >gi|157964968|ref|YP_001499792.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5] gi|157844744|gb|ABV85245.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5] Length = 525 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 87/482 (18%), Positives = 200/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ V++ F+ +G+ D L V + + F+ + Sbjct: 2 MLDNIRKTADSFIMRVLFVMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 62 SLEINAISKQTGTSLTDEEIAKLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 121 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG FV + D Sbjct: 122 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFVESFYVPKAMTD 181 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + ++ ++ P I P++ L +++ K + PE + SYI Sbjct: 182 NIVDYMAEKREVELVQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTAFEVPEKRSFSYIKA 241 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 242 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 299 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + ++ S+++ E ADSIF L++ G+ + I Sbjct: 300 DETAAGSSLVEIAEKYKLPIQNVHYISYAELIEDKIIAENADSIFELSE-GELSYPIETE 358 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 359 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 415 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + I + + +++ + ++L +F + + D Y Sbjct: 416 NIKELQATGIKISKKSYIRSEMED----DLTLTPEILLSIFNTKIGSNTP-VFQVGDEVY 470 Query: 464 MW 465 Sbjct: 471 FA 472 >gi|15893195|ref|NP_360909.1| hypothetical protein RC1272 [Rickettsia conorii str. Malish 7] gi|15620408|gb|AAL03810.1| unknown [Rickettsia conorii str. Malish 7] Length = 524 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 199/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLDNIRKTTDSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + +++ S+++ E ADSIF L++ G+ + I Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSE-GELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S + Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQK 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + + ++ + + ++L +F + + D Y Sbjct: 415 NIKELKATGIKISNKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469 Query: 464 MW 465 Sbjct: 470 FA 471 >gi|258545268|ref|ZP_05705502.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] gi|258519481|gb|EEV88340.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] Length = 610 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 100/635 (15%), Positives = 231/635 (36%), Gaps = 59/635 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ + + +++ + L G+ F+ G + + +V Q+VP ++ Sbjct: 25 MLEDIREKKTNRITYLLVIIAGIGMLFIGVP--YFNHGGETNIATVNGQEVPL----RAY 78 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 +++ I Q+ + ++ L ++ + +LV Q + ++ I Sbjct: 79 QEQYRDIQQQQPDLSETD------LKQRAVRSLVERTLFQQQALNSRYRLPDSALYRIIK 132 Query: 121 RSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +F + + + L GI+ + Y S +N L Sbjct: 133 E---------QFGNDENYQQWLKSRGISAETYQQSVRSDQSIASYYSALQAAGGENNPLY 183 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + + R + + A + +++ L + +E + + Y PE I+Y ++D+ Sbjct: 184 QHYLQSAAQERGYTLYTIPRAPIAAAINVNDSALQKHYEAHGERYATPETVDINYTIYDI 243 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQ 298 + +S++++ + E R L+ + K A +A ++K G K F Sbjct: 244 ADLP----VSDEQIAKA-------RAASERRGGRYLIIDDAKAASDAAAAIKDGRKTFAD 292 Query: 299 LAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 ++ + + L +K L +++F+LAK GD +P+I +G ++ + N Sbjct: 293 YWQDIQNKTLAGESGELALAAKGKGTSPELDEALFALAKPGDVSPLIDSEYGKILVELGN 352 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+ S +E++ ++ ++ E + + G + I I Sbjct: 353 IETG-NRSDEELR-----RLAASENETAYTEHANQAFDAAQNGKGLAAI---TGITGGQT 403 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + D P + LF D V + ++ + + + Sbjct: 404 QSLSAITADSDAAPWLHEPKIQAQLFGAQALPDN-KVGEPVEIGPQRTLFFTVSKREKPQ 462 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 R +V V+ D++ + + + + L ++ + + A T N Sbjct: 463 PRPFADVRAQVETDYRNEQANTTLHERGDALKQALAESPEKAAALASEYQAKSETVAPAN 522 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYL 594 R +N + ++F+ + +G +V ++ + + G P Q + L Sbjct: 523 RYTTQN-----PLVLELFN-QSARISSLDTPDGD-LLVARLDSVRDGDPAQLPEPVRQTL 575 Query: 595 TQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQR 625 TQ + S+ +L Q ++V++ +QR Sbjct: 576 TQAWQMQAISGVYKSMGDWLYRQAKISVNEEALQR 610 >gi|157829104|ref|YP_001495346.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933829|ref|YP_001650618.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str. Iowa] gi|157801585|gb|ABV76838.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908916|gb|ABY73212.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str. Iowa] Length = 524 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 198/482 (41%), Gaps = 28/482 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML IRK + +++ ++ ++ F+ +G+ D L V + + F+ + Sbjct: 1 MLNNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ I ++ ++ P I P+ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ ++ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG- 344 G +++AE+ + +++ S+++ E AD+IF L++ G+ + I Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADNIFELSE-GELSYPIETE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADV---NLKIIKDLAKEYNSDQE 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + + ++ + + ++L +F + + D Y Sbjct: 415 NIKELKATGIKISKKSY----IRSEMENDLTLTPEILLSIFNTTIGSNTP-VFQVGDEVY 469 Query: 464 MW 465 Sbjct: 470 FA 471 >gi|51473990|ref|YP_067747.1| hypothetical protein RT0810 [Rickettsia typhi str. Wilmington] gi|51460302|gb|AAU04265.1| rickettsial conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 526 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 197/473 (41%), Gaps = 31/473 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK S +++ ++ ++ F+ +G+ D L + V+ + + F+ + Sbjct: 1 MLDNIRKTSDSFIMRVLFAMIAFAFVGFGIKDILNVRRNNDIVIFSHARNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++IG + E + +D +IL +L+ LD + L+ + + Sbjct: 61 SLEINAISKQIGKSLTDEEIIQLNIDNRILKSLIYNNILDYLVSYYDLDLGDDTIKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F F +F + I E +Y+ ++ + + + +V FV + D Sbjct: 121 ESPIFKNAQGVFDIKIFKTYFRNAYIGEDKYLLNFKEQVLKNIIVSTFVKSFYVPKSMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + L+ ++ P I P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAERREVELLQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE---QLVFPNQK-------EADEAF 287 ++ + KI I+ DEL A Y +NK+++ V+ +F +K A++ Sbjct: 241 NIKDL--KISITQDELLAFYNENKDEFGDQSFEAVQTQLHDLFRAKKFDILNMEFANKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSK----EYIPD--VSLADSIFSLAKKGDFTPV 341 + G ++++E+ + +++ S+++ I D ADSIF LA+ P+ Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYLSYAELIEDNIIADNIAENADSIFELAEGELSYPI 358 Query: 342 IHGSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 G Y ++ + +I+P+ F +K + ++ + K L + G Sbjct: 359 EAGDKSYLLLVELKSIQPAKIPKFDAIKDQVNEVWIKRNIEDENLKMIKDLAKEYNAGQK 418 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 + + I + + ++ + + ++L +F + Sbjct: 419 -----KEFNVAGIKISRKSY----IRAEMENDLTLTPEILLSIFNTKIGSNTP 462 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 95/264 (35%), Gaps = 14/264 (5%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 SF+ V+ + + R K E +LE+ +A G S+ EIS + K+ ++ + +A Sbjct: 268 QSFEAVQTQLHDLFRAKKFDILNMEFANKLEDEIASGASLVEISEKYKLPIQNVNYLSYA 327 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLE 480 I +F + + + D SY+ V++K PA+ K + Sbjct: 328 ELIEDNIIADNIAENADSIFEL----AEGELSYPIEAGDKSYLLLVELKSIQPAKIPKFD 383 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 + V + W +E L EY+ K ++ G + + I Sbjct: 384 AIKDQVNEVWIKRNIEDENLKMIKDLAKEYNAGQKKEFNVA---GIKISRKSYIRAEMEN 440 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD---KFISYLTQM 597 + + + +F+ + G + +S + + ++ + + Sbjct: 441 DLTLTPEILLSIFNTKIG-SNTPVFRVGDVVYFAHIKSSSIDELTAQNIHVNLENNIIYN 499 Query: 598 MNKDLLDSVIAY--LKSQYSVTVH 619 + +++ +I Y +++ + + Sbjct: 500 IKNSVIEELINYTIMQNDMKIKYN 523 >gi|67459692|ref|YP_247316.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia felis URRWXCal2] gi|67005225|gb|AAY62151.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia felis URRWXCal2] Length = 524 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 89/483 (18%), Positives = 199/483 (41%), Gaps = 28/483 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IRK + +++ ++ ++ F+ +G D L V + + F+ + Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGFKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E+ IS++ G + E + +D +IL LV LD + L+ V + Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVGYYDLDLSDDTVKILVK 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 SP+F + F +F + ++E++Y+ ++ + + VG FV + D Sbjct: 121 ESPVFKNEQGIFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGSFVESFYVPKAMTD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPA---IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + E R V+ + ++ ++ P I+ P++ L +++ K + PE + SYI Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPKDLQISTPTDQQLKVFYQDNKTVFEVPEKRSFSYIKA 240 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP----------EIRTVEQLVFPNQKEADEAF 287 ++ + K+ I+ DEL Y +NK+++ ++ +++ N + A + Sbjct: 241 NIKDL--KVSITQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHG 344 G +++AE+ + +++ S++ E I D +A DSIF L++ P+ Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYA-ELIEDKIIAENVDSIFELSEGELSYPIEAE 357 Query: 345 SFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 Y+I + +I+P+ F +K+ + ++ + K +++ S E Sbjct: 358 DKSYLILVELKSIQPAKIPEFDAIKEQVNKVWIKQNIADV---NLKIIKDLAKEYNSDQE 414 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + K I + + ++ + + ++L +F + + D Y Sbjct: 415 NIKELKAAGIKISKKSY----IRAEMENDLTLTPEILLSIFNTKIGSNTP-IFQVGDEVY 469 Query: 464 MWV 466 Sbjct: 470 FAY 472 >gi|152990776|ref|YP_001356498.1| hypothetical protein NIS_1031 [Nitratiruptor sp. SB155-2] gi|151422637|dbj|BAF70141.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 490 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 160/399 (40%), Gaps = 25/399 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K + V I++ + F+ WG S S V VG +K+ F Sbjct: 1 MISWMQKHKKYLVITIWISTIAFVGAGFVGWGAYKY---GSASDAVAEVGNEKITLKEFQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ + ++ E+A+ +GLDK +L+ L+ A L+ + D+GL V Sbjct: 58 QRYANVYNYYNKMLQGKLDQEQAKKMGLDKMVLNELIQEALLENYAHDLGLIVTDEEVAQ 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +IA +F ++ F ++ L + I K++ K L + + +P L Sbjct: 118 KIASMKVF-WQNGHFEKSLYNKLLQQNRIKPKDFEQSIRKELLLNKLHQALLYS-KPLQL 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 D F ++Y VL ++ + + L ++++K+K+ Y+ +S I Sbjct: 176 EFDTMASALFMGDKIEYTVLTDKDI--DVTVTRTELKKYYDKHKNEYKTAPKYDLSIIEM 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + ++S +EL++ Y++N+ KY + + P K + L K Sbjct: 234 PIKHF----KVSEEELKSYYKQNRLKYKDANGK-----ILPFDKAKKQVMHDLDIKKSKK 284 Query: 298 Q-----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + + ++GK + L + L I ++ P++ YVI Sbjct: 285 EALKKYIQFKKGKLQAQKHLIVAQNNTSFPLPLMQKIAQASQNSVLKPILVEDR-YVIVK 343 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 V+ P + F++ ++ + K + + E K++ Sbjct: 344 VNKKIPPLPMPFEKAVTEVKKDLLQQKRYQLLLEKAKKM 382 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 L + Y+ V++ + IP E+ +T+VKKD K + + KA ++V Sbjct: 333 ILVEDRYVIVKVNKKIPPLPMPFEKAVTEVKKDLLQQKRYQLLLEKAKKMV 383 >gi|299138720|ref|ZP_07031898.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX8] gi|298599356|gb|EFI55516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX8] Length = 656 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 91/636 (14%), Positives = 221/636 (34%), Gaps = 48/636 (7%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINSWKQELGMISQK 70 + + + + +I + + + ++ ++ + S + ++ + ++ Sbjct: 15 IFALIIGAAIITMVITLVPGIFDNGANNNPSVFATIHTPGIFGKIVGESQQVQMADVQRQ 74 Query: 71 IGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR--SPLF 125 + + L ++ V L + +GL+ + + + + Sbjct: 75 TMQQIQQQHLPEQYAPLLAGRVGQQQVERKVLALEADRLGLQVSDEDLRSFMQKGTLSQY 134 Query: 126 HGKDNKF-SHDVFVSRLAR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 KF D + + + + I+ E+ L + + G+ S+ + Sbjct: 135 IFPGGKFIGTDQYTNFVQQYFQISVPEFEAEVKSDLELQRLQSLVTAGVTVSDAAVRADY 194 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA--PEYKRISYILFDVHE 241 DY V+ + +PS+A L +F+++ Y PE +++ FD Sbjct: 195 MQQGTKVKFDYAVIAASDIKKTINPSDADLQAFFKQFAARYATAIPETRKLELFSFDASN 254 Query: 242 KE-KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288 K ++++ ++QA Y + ++Y PE ++ K +A++ + Sbjct: 255 IPGGKPQVNDADVQAYYNAHLDQYKLPEQVKTRHILITVAKGADAKTDAAAKAKAEDILK 314 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F LA++ G + ++P+ S + +L G + ++ Sbjct: 315 QIRAGGNFADLAKKNSDDPGSKDQGGELPLMPTSGFVPEYS--KAAMAL-NPGQTSDLVR 371 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FGY I + + T + E K I ++ KA +L A + Sbjct: 372 SQFGYHIIQTEQKEAAHTKTLAETKDTIVPLLQQQKAGAAELNFANQL----AAEAKKNG 427 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + S+ L D+ G D +A++ +L + FG A Y Sbjct: 428 MQKTADAHSLHLVTTDYIGHD---GVIASLADSSNVLTQAFG--VAKGAAPATASTGEGY 482 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 Q+ + A + + D++ K E ++S+ +L + +K + + Sbjct: 483 AVFQVDDIKAAHAPDFADYKPHILDDYREQKAPELLNSQLIKL-ADRAKVLNDLKKAAAE 541 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 + + T++ + R G + VFS P + PI G + V ++ + + Sbjct: 542 MNVPVKTSDLVGRDAQVPDLGALTGPASVVFSLPKGGI-SGPINEGPNGSVIQLADKQEP 600 Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614 + L + +++ + + L +Y Sbjct: 601 TADDIAKNLPTSREKLLNVKREEIFNVFVGSLMDKY 636 >gi|330721964|gb|EGG99902.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC2047] Length = 471 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 180/480 (37%), Gaps = 32/480 (6%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + + +D R + R Y+ +N + A S+A + ++E Sbjct: 1 MLIQQMQLGIASSAFITPAEIDLLARIDRQTRDFSYLTINANELAADIVISDAEVQAYYE 60 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + +Y + E +I Y+ + I++ E++ Y++ + + + R ++ Sbjct: 61 ENLADYMSEESLKIEYLELKQADFASNIDVDEAEIEQLYQQETDALAAQQERRAAHILIT 120 Query: 279 NQK----EAD----EAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLA 326 + EA+ E +K G+ F +LA+ + G + + LG K Sbjct: 121 EEARSSNEAEQLIIELQNKIKAGEDFAELAKRYSEDPGSAENGGDLGFVEKGAFV-PEFE 179 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +FSL +G+ + ++ FGY + + ++ F+ ++ +A ++R KA E+ Sbjct: 180 QVLFSL-NEGEVSDIVETEFGYHLIRLEELRTPEAEPFEMARERLAGELRFRKAEEEFVA 238 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + L+ + E ++ + + +G +AA ++ F Sbjct: 239 AAEELQNDSFSAGDLVEPAQNQGLSIQTTEFFSR----QQGSGIAAFEKVRRVAFSDELL 294 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + + D + L +++K+ P++ + LEEV +D++ K + Q+ Sbjct: 295 TEGNNSD-LIELSKDHVAVIRVKQHNPSKPQALEEVASDIRSTLKARAAQQNAQKMGEQI 353 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKC 562 ++E ++GK + + G L + +NR+ N+ + + ++F+ Sbjct: 354 LVEL-RDGKTLQQASDDYGYPLNSYQGVNRIAND---VDSEILDELFALAKPRDSGATTG 409 Query: 563 FPIENGLSYVVFKVTNSKVGPVQ-----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 I + +V+ + G EK L Q L ++ + + Sbjct: 410 SLINSQGDFVILSLNKVSEGDASALSDPEKQAMSRILAQQTGIQTLKEFVSGQLASAEIE 469 >gi|222824176|ref|YP_002575750.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100] gi|222539398|gb|ACM64499.1| conserved hypothetical protein, putative peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100] Length = 492 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 98/487 (20%), Positives = 192/487 (39%), Gaps = 59/487 (12%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ V+ F+ WG F+ S++V VG +K+ + F Sbjct: 1 MLTWMQHHKKYLVVTIWISVIAFVGAGFVGWG--SYDFNTDRSNSVAKVGDEKISYDEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q G SQ E+A+ GLD + ++ L+ L + + +GL + Sbjct: 59 LKYSQLFGYYSQLNNGNYTQEQAQKDGLDTQAINELIQEKLLLSYAKTLGLNVSEEEIAY 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++A +FH F +++ + LAR K Y L + + ++P+ L Sbjct: 119 DLAHQKIFHNASGVFDKNLYYNLLARNNYTPKTYEKIIHDELLLKKINAILNLQIKPNEL 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A ++ V I L+N+++ L Q +EK K+ Y+ ++ Sbjct: 179 DMFGASFLMQDSLKVQAIKLDNKNI----TMDEKELKQTWEKNKELYKTQRSYELATYFL 234 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----------KEADEA 286 + I+I + E+QA YE+NK Y + + ++ +A+E+ Sbjct: 235 NPDI----IKIDDKEIQAYYEENKNDYKDFAGKILSLEQSKDKVIKDLKLSKLKLKANES 290 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + +L+K +L ++ ++SD + Y P ++ + K+ DF Sbjct: 291 YVALRKN----ELNFDKNITISDADV------YYPLENIQKA-----KENDFIKPFKFEN 335 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY+IA V I P T++F++ K +++ K ++E K + Sbjct: 336 GYMIAKVIKINPIQTMTFEQAKNEVSKLYIKEKTKALLEEKAKIALD------------- 382 Query: 407 REKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 ID+ + K+ K E+ + L VF +K + L D + Sbjct: 383 --NFQGIDIGTYSRDSSKNAKVGEMMNDTEFSEFLMHVFDS----NKAKSYVLFDDKAIV 436 Query: 466 VQIKESI 472 +I + Sbjct: 437 YEITKQT 443 >gi|153004233|ref|YP_001378558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] gi|152027806|gb|ABS25574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] Length = 523 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 81/540 (15%), Positives = 184/540 (34%), Gaps = 63/540 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55 MLE +R + IFL + + F+I +G + +G+S V + +P Sbjct: 1 MLEGLRANKGGIITWIFLGAIILVFVISFGPGSLNQGGGCAGAGASYAAKVNGKTIPAVE 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + + Q + ++G E A +GL ++ L LV + Q ++ G+ + Sbjct: 61 WERQYSQLYDLYQSQMGGGFTRELAAQLGLAEQALSQLVDRELVIQEAKERGIVVSDEEL 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P FH F + + + + + ++ Y + L ++ ++ S Sbjct: 121 SSAIHAIPAFHR-SGAFHFETYEAAARQNFGSPAKFESWYREQLLYGKMLAAVGETVKVS 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + +A + + S+ ++ A PS+A + + EK Sbjct: 180 GAEVKEAWQADADKLSLSFVRFPLAAFQAEVKPSDAEVKAFAEK---------------- 223 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKEADEA 286 ++ ++ N ++ + V ++ +K+ +EA Sbjct: 224 -------------DGARIEQFHKDNAARFDQQKKVRVRHVLARVTPGADDAAARKKIEEA 270 Query: 287 FQSLKKGKKF----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 +K+G+ F L++++G LG ++ + D A + +L ++G + + Sbjct: 271 AARVKQGEAFEKVVAALSDDEGTKARGGDLGFVTEG-LFDEQFAKAALAL-EQGQVSAPV 328 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSM 401 + G+ + + P+ VS + + DIA + ++ +A + E + G + Sbjct: 329 RSASGWHLVKAEEVVPAKKVSLADARLDIARELLQQDRARKLAAERAQAAHAAARSGKPL 388 Query: 402 D-----------EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + K+ + + V + +L+ Sbjct: 389 AQQFPDAEAAKKAKATPVKVGGQTIAAEETGTFTASSPFVPKLGPAAELVGAARAAKAGE 448 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 LP G + V + ++ E V + + K A+ VS L + Sbjct: 449 VLPKVYDLPAGPVVAV-VTARETPDEKAFEGARDQVAERLRNEKEAQVVSRWLEGLRKDA 507 >gi|146329199|ref|YP_001209808.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A] gi|146232669|gb|ABQ13647.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A] Length = 621 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 91/634 (14%), Positives = 214/634 (33%), Gaps = 50/634 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + + + + V + + G+ L +TV V + F Sbjct: 21 MADAVSEKKGNRFTYALVGVAGLGVVFIGVP-ILTPKYQPATVAQVNGISIEQHDF---- 75 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + Q++ + + E + + L +++ L Q G A ++ + Sbjct: 76 NRMVSHLQQRLTNIPSKE------VRELALQQIINETLLRQHALQSGYLASRQDLYTAVK 129 Query: 121 RSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +F ++ + L + I + Y L+ + + + + L Sbjct: 130 A---------QFGDNETYEKWLKSQRITAQNYEAGLYHDLTVSQYYQLLGKTVFIGDELQ 180 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + R + + R V L A + VL ++E+ + Y + E + Y++ D Sbjct: 181 NAFYRLFSQQRDVTLFTLPLAEKIASVKTTPEVLRAYYEENRARYMSDETVSVRYVILDA 240 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 EIS EL A + + + R + ++F ++ A++ +L +G+ F Sbjct: 241 AHLAGNAEISEQELAAA----RAAMVNDDRRDGQYIIFDDKAVAEQTAAALAQGERSFAD 296 Query: 299 LAEEQGKSLSDISLGSFS---KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + K G F K P + +FSL K GD + + +G ++ + Sbjct: 297 IVAAIEKKELAGQSGLFDLHKKGEGPSEKADEVLFSLQKTGDTSALFDTEYGAMLVQLGK 356 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + + E + +++ K E+ + + G ++D+I+ K L Sbjct: 357 VVAA---DLDEAA--LRSKLLAEKNQERYTHLANEAFDTVVRGGTIDDIAALAKSAPQQL 411 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + + +LF + L + ++ ++ + + Sbjct: 412 SQITAHTAQPD---WLTKAELQNVLFGADAM-ATGKLGTPIELDETRSLFYEVDARVLPK 467 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR--DIGKNLGASLLTTNQ 533 + E+V T V +D++T + + + A+ L + G + +G++ A + Sbjct: 468 ELPYEQVETQVTRDYRTDEAKKALRITADTLATQLV-AGDDLDTQTLGESAKAVYQKIGE 526 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV----VFKVTNSKVGPVQEKDK 589 + + + Q E V NG V + P + D Sbjct: 527 FKVPEKMDNAIFQQVMQQ-----HEKVAQLEATNGDLVVSRIDAVYDGSVDAVPKEAVDL 581 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 F + D + +L+ + ++ + +L+ Sbjct: 582 FNQQMVLTYQTDAMRGYTDWLRQRANIKTNQSLL 615 >gi|226227335|ref|YP_002761441.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27] gi|226090526|dbj|BAH38971.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27] Length = 610 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 95/640 (14%), Positives = 212/640 (33%), Gaps = 71/640 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58 ML+ +R A++ I + + FL++ S V+ ++++ +V +++ +++ N Sbjct: 1 MLQSMRSAAKYIWIFIIVAFVG-SFLLYETSGLAGRAPVTTTTSIATVNGEEILLTTWQN 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + Q+ G V + L+ + D +V+ L Q + G+ V Sbjct: 60 AVNSLEQQQQQQSGRGVTLDE--RQQLEDRAFDEIVTEILLQQEYKRRGITVTDEEVVQA 117 Query: 119 IARSPLFHG-------KDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVG 166 SP D KF ++ L + G+ Y + + + Sbjct: 118 ARVSPPPQATSSPDLQTDGKFDMQKYLRLLSSPMARQSGM-LAGLEAFYRNEIPKQKLFD 176 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYR 225 G S+ L Q R ++ +V ++VL + ++A ++Q++++ K Y Sbjct: 177 QVASGAYVSDERLWQVYRDRHDSAAVSFVVLRTDALTDTSVTVTDAEISQFYDRNKKRYE 236 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 P +S + ++ + D+ Sbjct: 237 RPGRAIVSLLTVPR-------TVTAAD-----------------------SAAAHTRIDQ 266 Query: 286 AFQSLKKGKKFIQLAEEQGKS-LSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVI 342 + G KF +A+ + LS G+ K ++ ++L K G+ + + Sbjct: 267 IRAEIVGGAKFEDVAKRESTDSLSGAQGGALGKGGRNRFTPKFEEAAYAL-KVGELSQPV 325 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FG+ I V + K D+ + + ++ R + LA + Sbjct: 326 LTPFGWHIIRVDDRKGDTL--------DLRHILVTVGQTDSSATRTDRRADSLANLGASQ 377 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 E +++ + L L V+ + ++ + + + + Sbjct: 378 EDAKKFDDAAKALGLTAAQMVVVEKEPLSFAGRYVPSVSAWSFSGVRPGESSDLFDSPEA 437 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 Y ++ + L EV D+++ K E++ LV Sbjct: 438 YYIARLDSLTKGGPQSLAEVKDDIRRRLARDKRIEKLRPDGEALVAAARSG--TLEAAAA 495 Query: 523 NLGASLLTTNQINRMDNENKFFGYD-GISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSK 580 G ++ + +R+D + I F PV V F ++G+ VV ++ + Sbjct: 496 AKGLTVEKSAGFSRVDAVPGLGQFTQAIGGAFMVPVGQVGGPFRAQDGM--VVLRIDSRN 553 Query: 581 VGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 EK L Q + + +D ++ L+ + Sbjct: 554 DAKRDAFEAEKASQRGQLLQSLRQQRIDEYLSNLRENTKI 593 >gi|313681990|ref|YP_004059728.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994] gi|313154850|gb|ADR33528.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994] Length = 488 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 89/495 (17%), Positives = 177/495 (35%), Gaps = 54/495 (10%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + V I++ + F+ WG + + V VG + + Sbjct: 1 MITWMQRHRKYLVITIWISTIAFIGAGFVGWGQYNY---GDKAGAVAKVGDISITSAELQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+ +Q + ++A+ GL ++ L LV+ A + GL +W Sbjct: 58 KSYSNLFNQYNQLFQGKFDEKQAQQFGLQRQALRQLVNQALVLNLANSYGLTVTDQELWD 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F KD F + L + + KEY + K L + + G++P + Sbjct: 118 VIKSQSAF-SKDGTFDKSTYAEVLKQNRLTIKEYEESMKKELLIQKTLYLLSSGVKP--I 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + + Y +L + P++A L ++EK +++ ISY+ Sbjct: 175 EENTLADALGVSDKISYKILTPDMIS--LAPTDAELKAFWEKRSGDFKTTPSYEISYVTQ 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE------QLVF-----PNQKEADEA 286 S E+ Y+ N++ + E + + +V +KEA Sbjct: 233 TPITAAP----SQKEISDYYDINRQMLKNGEGKVLSLQEAQPIIVAALNEKATEKEALRL 288 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 + KKG + + G ++ + P+ L I L+ + F S Sbjct: 289 YIDYKKG------SLKPGMKPQTATVTKSVSPFAPE--LTKEITELSTEKAFLKPRKVSN 340 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GYVI + + P+ +++E K D+ K++E + GT+ D ++R Sbjct: 341 GYVIVKLDKMDPARPKTYEEAKTDVMALYLNDTKKTKLQELAQN-SYKTFSGTTTDYLTR 399 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 +E L + P + L ++F K + L G+ + Sbjct: 400 KESAKIAGL----------------SEPEGSEFLSKLFAS---KQKQGFITLESGNVIMY 440 Query: 467 QIKESIPARDRKLEE 481 + E +DR L + Sbjct: 441 NVLEQKLLQDRTLAD 455 >gi|296313658|ref|ZP_06863599.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria polysaccharea ATCC 43768] gi|296839799|gb|EFH23737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria polysaccharea ATCC 43768] Length = 512 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 79/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S GS +V VG +K+ S + + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHSINVTMQNE-----QAAGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 65 SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ S+ +Q + NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDTQAEQLVKLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + YE+ + + + F +K A E +KK F + E+ G Sbjct: 236 KNAYEERMARLPAEGEKP----SFEKEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLDEAAKNSGLKVETQDTWLSRQDTQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ T+ F+E K + +A++ + K L+ G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFEEAKDAVRQAYIRAEATKLAENKAKETLAQLSGGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPESYTELLKAKPANGKPAYVRLTGLPAPVIVEVQAITPPEDIAA- 468 Query: 467 QIKESIPARDRKLEE 481 +P + L + Sbjct: 469 ----QLPPAKQALAQ 479 >gi|32490901|ref|NP_871155.1| hypothetical protein WGLp152 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166107|dbj|BAC24298.1| ppiD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 628 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 100/608 (16%), Positives = 232/608 (38%), Gaps = 34/608 (5%) Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87 GL FS + S ++ + +K+ + F + + +N + Sbjct: 30 TGLGTY-FSGNNESYIIKINNEKISYDKFQQNMMNFKINNNINDNLDINEHKLNFF--KN 86 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 ++L ++ L Q+ + I L ++ I F+ + F + S L+ G++ Sbjct: 87 QVLLKIIENTLLKQYAKKINLIITEEKIKKTIYEISEFNSEIG-FDLNKLKSLLSDIGLS 145 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 +I L +++ + ++ Y + R + + I Sbjct: 146 LDSFIKEIYDQLLINEIINIIDITSFLLPYEIENILLQYLQERHIKLATFDKTQEININS 205 Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK--EKKIEISNDELQAEYEKNKEKYF 265 S++ ++ Y P+ I+Y+ ++++ + KI + E+Q Y KN +K+ Sbjct: 206 VSDSEAEAEYKLNSHKYVTPKKFNINYLKININDIKNKDKIIAKSKEVQEWYLKNIKKFT 265 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIP 321 PE + + F ++KEA +K K F ++A+ + K + ++ +G +++I Sbjct: 266 LPEKKRYSIIQFDSEKEAIFYLNKIKNEKDFFEIAKNKSKDIFSSVNNGDIGWIQEDFII 325 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + I +L K + + +I S GY+I ++ I P + K+I N ++ K+ Sbjct: 326 E---EIKIANLKNKNEISKIIKSSSGYLIIMLTEIIPKVEQDLKYFYKEIENYIKEEKSI 382 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + ++++ LA + + + + + K + I ++ Sbjct: 383 KIFNNYIEKIK-ILAKDNKYSFNDLKNDFRNYYINNTGW----IDEKNIINIFNSFEIDQ 437 Query: 442 RVFGKDDPLSKDHTVALP-----DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 ++ + + L + ++ I + + + EV +KK K Sbjct: 438 EKLNINNINKCNFNIKLDQFHIKNDEFLVFCINDFLDKKIISFSEVKDQIKKQVLHDKFI 497 Query: 497 EEVSSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 + K ++E SK N ++ K G L ++ D+++ +F+ Sbjct: 498 LQSKIKLKNAIIELESKNSPNIEEVMKKFGLIFLEKKTLDLFDDKSDEKLKYL---IFNM 554 Query: 556 --PVEMVKCFPI----ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 P K + I E L ++ K+T ++ V K+ I+ L +K +D+++ Sbjct: 555 KEPNYKKKSYEIFIDNEKILLVILDKITQKRINSVD-KNILINQLKNKNSKLDIDALLNN 613 Query: 610 LKSQYSVT 617 LK++ + Sbjct: 614 LKNKSKIK 621 >gi|213521163|gb|ACJ50520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens] Length = 279 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 108/283 (38%), Gaps = 6/283 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 ML+ IR S+ W+AK + ++ G+ S + V V +++ + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNNKQDVAKVNGEEITQTELSQA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + Q++G ++ L L L+ L Q D + I Sbjct: 61 VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 ++P F D KF+ + F + + G + ++ T+ + V G ++ + Sbjct: 121 LQTPEFQ-VDGKFNAERFDQVVRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEV 179 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 R + R D+ +N + PA ++ + +++++ + P+ I Y+ Sbjct: 180 LAFARLEKQTR--DFATVNIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ + +DELQA YE KE E R ++ + Sbjct: 238 SSFFDQVTVKDDELQAAYE--KETANLAEQRRAAHILDEVNDK 278 >gi|330889992|gb|EGH22653.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str. 301020] Length = 427 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 68/437 (15%), Positives = 158/437 (36%), Gaps = 37/437 (8%) Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 ++ + ++++ + +PE + YI K+++ +++LQA Y+K Sbjct: 4 TTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIA 63 Query: 263 KYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 E R ++ + + +E Q L KG+ F LA+E + S G Sbjct: 64 NLS--EQRRAAHILIEVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKG 121 Query: 314 S---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ + + D + D++++L K + + FG+ + + ++ +F +K Sbjct: 122 GDLGYAGKGVYDPAFEDTLYALNKD-QVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDK 180 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ +K E K+LE+ + + + ++ + G + Sbjct: 181 LTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGGE------ 234 Query: 431 AAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 I ++ F + + S +T+ L + + V+ KE + + LE V + ++ Sbjct: 235 -GITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 293 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548 +K L+ ++GK K G + + R + Sbjct: 294 QLVKEHATAAAKAKGEALLAGL-RDGK-IPLAAKQDGRDWKSMEAVTRS---QEGVDPQV 348 Query: 549 ISQVFSGPVEMVKCFP------IENGLSYVV--FKVTNSKVGPVQEKDKFISYLTQMMNK 600 + +F P K P +G +V V + EK ++ +L + Sbjct: 349 LQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQ 408 Query: 601 DLLDSVIAYLKSQYSVT 617 + A L+S+ + Sbjct: 409 QDFAAYRAQLESKAKIE 425 >gi|255322620|ref|ZP_05363764.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255300181|gb|EET79454.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 487 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 90/409 (22%), Positives = 163/409 (39%), Gaps = 18/409 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K + V I++ + F+ WG D + S +S+V VG + + F Sbjct: 1 MITWMQKHRKYLVVTIWVSTIAFVGAGFVGWGAYD--LNASRASSVAKVGHRNISIQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 N + Q SQ ++ E A +G++ L+ LV+ A L F +D+GL + + Sbjct: 59 NRYGQLHAYYSQLFDGQLSDENASELGIENLALEALVNDAMLLNFADDLGLGVNDEDIVK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I FH + KF +++ + L R E EY + ++ + ++ Sbjct: 119 YIIADQNFHS-NGKFDKELYKNTLKRARTTESEYEESLKNVILLDKLRHALNLPANAQDI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A + S+ + N + L + +E++K+ Y+ + L Sbjct: 178 DMLTASFLMQDKISIKVVEANADEI----KIDEDALKKLWEEHKNEYKT----MTEFKLD 229 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + +EL Y +NK +Y + + E ++ D + KK Sbjct: 230 TKFIPAISSDANTNELTEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEE 289 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++ + +D+S+ +F + SL LAKKGD GY+I V I Sbjct: 290 YLKIKKDEKQADVSVSTFED----NASLPMDELKLAKKGDTLKPFEYEDGYMIVKVKEIV 345 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 +SF E K+ I + K E V+ K L E GT + +SR Sbjct: 346 APRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEKGFQGTDIGFVSR 394 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 100/262 (38%), Gaps = 46/262 (17%) Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 F+ VK ++ + + + E+Y +++ + EK + + Sbjct: 262 KIKEFEAVKDEVLKDYNLKQTKKVALEEYLKIK-------------KDEKQADVSVSTF- 307 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 ++ A++P E L + P + YM V++KE + R Sbjct: 308 --------EDNASLPMDELKLAKKGDTLKPFEY-------EDGYMIVKVKEIVAPRVMSF 352 Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 +E + + +K KT E V +KA +L+ + + ++ + + Sbjct: 353 DEAKEQILELYKEQKTKEIVEAKAKELLEKGFQG----------TDIGFVSRDTVKAEGG 402 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599 ++ ++++F K + + G VV+++T K+ +++ ++ +TQ + Sbjct: 403 LSEGEFNIFVNRLFE--KGGKKGYVVL-GDKAVVYEITEQKLTNSEKEKEYKEIITQNVG 459 Query: 600 ----KDLLDSVIAYLKSQYSVT 617 +L+ + A L +Y VT Sbjct: 460 FLKNNELIRDLTAMLSKRYQVT 481 >gi|220916557|ref|YP_002491861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954411|gb|ACL64795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 523 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 78/554 (14%), Positives = 176/554 (31%), Gaps = 61/554 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55 ML+I+R + + + ++ + V F I +G + V + + + Sbjct: 1 MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ L Q+ G E A +GL ++ L L Q G+ V Sbjct: 61 FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 + + P F ++ +F ++ ++ + + + L ++G V ++ Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + S+ ++ A +A + +K Sbjct: 180 ATEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDAEAKAFADK---------------- 223 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEA 283 ++A Y++N ++Y V ++ +K+ Sbjct: 224 -------------EGARVEAFYKENADRYDQRAKAHVRHVLARVAPGASADEEAAARKKI 270 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 DEA +KKG+ F ++A + LG S+ + K G+ + Sbjct: 271 DEAAARVKKGEDFAKVAAALSDDPNTKDRGGDLGFVSEGLADAAFAKAA--LALKAGEVS 328 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALG 398 + G+ + + P+ V+ + + DIA + + +A +E + + G Sbjct: 329 EPVRTPAGWHLIRADEVVPARKVTLEAARLDIARELLARDRAQALAREKAQAALDAARKG 388 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKG-----KEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++DE+ + L A ++ V + +L Sbjct: 389 KALDELFPPAGKGKVTLGGTALAAEETGPFGAGSPVVPRVGAAPELAQAALSAKAGEVLP 448 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 P G + V P R E ++ + +K + + +L + +K Sbjct: 449 KVFDTPSGPVIAVVKLRESPDPAR-FEAERAGIEARLQGMKAEQVRRAWLEELRGK-AKI 506 Query: 514 GKNFRDIGKNLGAS 527 +N +G A+ Sbjct: 507 EENVALLGAAQPAA 520 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 90/269 (33%), Gaps = 21/269 (7%) Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ ++++ K+++E A ++ ++ +S D D G Sbjct: 250 VLARVAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGGDL----GF 305 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + + + V P G + ++ E +PAR LE D+ ++ Sbjct: 306 VSEGLADAAFAKAALALKAGEVSEPVRTPAG-WHLIRADEVVPARKVTLEAARLDIAREL 364 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG----- 545 A+ ++ + Q L+ +++GK ++ G +T E FG Sbjct: 365 LARDRAQALAREKAQAALDAARKGKALDELFPPAGKGKVTLGGTALAAEETGPFGAGSPV 424 Query: 546 -------YDGISQVFSGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYL 594 + S V K F +G V K+ S E+ + L Sbjct: 425 VPRVGAAPELAQAALSAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEARL 484 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 M + + + + L+ + + + L+ Sbjct: 485 QGMKAEQVRRAWLEELRGKAKIEENVALL 513 >gi|115378201|ref|ZP_01465373.1| peptidyl-prolyl cis-trans isomerse domain protein, putative [Stigmatella aurantiaca DW4/3-1] gi|115364789|gb|EAU63852.1| peptidyl-prolyl cis-trans isomerse domain protein, putative [Stigmatella aurantiaca DW4/3-1] Length = 589 Score = 212 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 89/530 (16%), Positives = 185/530 (34%), Gaps = 71/530 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSV----GRQKVPFSSF 56 ++ + +R ++ + +V + V F + +G F V S +++P F Sbjct: 68 MDGM--NARKVLSLVGIVAIAVVFTLQFGPGSTGFGSGRGPVVPSAVAVVNGKEIPLRDF 125 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +L + + G + AR L +++D LV+ L Q E G+ + Sbjct: 126 SRVYAGQLNSLRNR-GVPIPESYARQ-SLPSQVMDQLVTRELLSQAAERHGINPSDDELR 183 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + FH KD +F+ + + L E +Y + + L+ ++ + G S Sbjct: 184 KLIHENADFH-KDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVS 242 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + V + A P+ A L ++ + + Sbjct: 243 DDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAH-------------- 288 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ 282 NDE+ YE N+ Y E Q++ + Sbjct: 289 ---------------NDEISTYYESNRFMYQQAERAKARQILVKLAPDAAAQQKAEAKSR 333 Query: 283 ADEAFQSL-KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 A+ + + + GK F +A E+ + S LG + + + +LA+++F+LA G Sbjct: 334 AEALHKEVTEGGKDFATVARERSEDPGTKASGGDLGWVERASL-EPTLAEAVFALAPNG- 391 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLA 396 + I G+ + V + + +E +IA + + KA E K ++ L Sbjct: 392 VSQPIETKLGWHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLK 451 Query: 397 LGTSMDEI---------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 G ++ ++ + + V+ G+ V + L F Sbjct: 452 GGQTLQQLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAP 511 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 P D L +G ++ Q+ E + D + ++++ + K E Sbjct: 512 GPQVLDQVFPLSEG-FVVAQVTERVKPSDETFTQKKDELREQTRRAKQIE 560 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 74/500 (14%), Positives = 154/500 (30%), Gaps = 76/500 (15%) Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + + G+ Q+ ++ V +L+ +PS+ L + + D Sbjct: 132 QLNSLRNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHENAD 191 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ ++ Y L+ Y + KY R + Sbjct: 192 FHKDGQFNFEQY---------------KRALRDYYRTTEPKYEEELRRQL---------A 227 Query: 283 ADEAFQSLKKGK--KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLAD-SIFSLA 333 A + Q + G ++ K + L + +P + A F A Sbjct: 228 AQKMLQVVNSGAVVSDDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKA 287 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE- 392 + + + + + + I ++ A+++ E R E Sbjct: 288 HNDEISTYYESN------RFMYQQAERAKA-----RQILVKLAPDAAAQQKAEAKSRAEA 336 Query: 393 ---EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 E G ++R + P +G D+ E A++ + L VF P Sbjct: 337 LHKEVTEGGKDFATVARERS----EDPGTKASGGDLGWVERASL--EPTLAEAVFAL-AP 389 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + G + V+++E A+D+KLEE ++ + A+E++ A + L Sbjct: 390 NGVSQPIETKLG-WHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALA 448 Query: 510 YSKEGKNFRDI---GKNLGASLLTTNQINRMDNENK-------------FFGYDGISQVF 553 K G+ + + K +L R + + F Sbjct: 449 SLKGGQTLQQLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAF 508 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609 S P V +VV +VT Q+KD+ + ++ +S + Sbjct: 509 SAPGPQVLDQVFPLSEGFVVAQVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKA 568 Query: 610 LKSQYSVTVHDNLIQRYLDG 629 L+ +V ++ IQ + Sbjct: 569 LRETGTVVENNEAIQTIVGA 588 >gi|261378747|ref|ZP_05983320.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea ATCC 14685] gi|269144903|gb|EEZ71321.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea ATCC 14685] Length = 512 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 83/494 (16%), Positives = 179/494 (36%), Gaps = 52/494 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S GS +V VG +K+ S + + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGSDYIVQVGDEKISDHSINTAMQNE-----QAKGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH KFS Sbjct: 65 SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ S+ +Q + NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDAQAEQLVKLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N ++A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + YE+ + + E+L F +K A E +KK F + E+ G Sbjct: 236 KNAYEERMARLPAEG----EKLSFEKEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 ----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF----------------G 347 + + G + +S D+ S + + + Sbjct: 292 SLADAAKNSGLKVETQETWLSRQDAQMSGLPENVISAIFSDDVLKKKHNSEVLSINNETA 351 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + + ++ T+ F+E K + T+A + +E K + L G + D Sbjct: 352 W-VVRAKEVREEKTLPFEEAKDAVRQAYIRTEAVKLAEERAKEVLAQLNGGKAADVKWSE 410 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 ++ + A + R+ G P+ + P Sbjct: 411 VSVLGAQQARQSMPPESYTELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPDD----- 465 Query: 468 IKESIPARDRKLEE 481 I +P+ + L + Sbjct: 466 IANRLPSAKQALAQ 479 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 18/156 (11%) Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-INR 536 E+ V+ + K K + + +L + + D KN G + T ++R Sbjct: 254 SFEKEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLADAAKNSGLKVETQETWLSR 313 Query: 537 MDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVV--FKVTNSKVGPVQEKDKF 590 D + + IS +FS V K I N ++VV +V K P +E Sbjct: 314 QDAQMSGLPENVISAIFSDDVLKKKHNSEVLSINNETAWVVRAKEVREEKTLPFEEAKDA 373 Query: 591 ISY---------LTQMMNKDLLDSVIAYLKSQYSVT 617 + L + K++L + V Sbjct: 374 VRQAYIRTEAVKLAEERAKEVLAQLNGG--KAADVK 407 >gi|197121763|ref|YP_002133714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] gi|196171612|gb|ACG72585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] Length = 524 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 76/555 (13%), Positives = 176/555 (31%), Gaps = 62/555 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55 ML+I+R + + + ++ + V F I +G + V + + + Sbjct: 1 MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ L Q+ G E A +GL ++ L L Q G+ V Sbjct: 61 FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 + + P F ++ +F ++ ++ + + + L ++G V ++ Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + S+ ++ A +A + +K Sbjct: 180 ATEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDADAKAFADK---------------- 223 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEA 283 ++A Y++N ++Y V ++ +K+ Sbjct: 224 -------------EGARVEAFYKENADRYDPKAKVHVRHVLARLAPGASADEEAAARKKI 270 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 DEA +KKG+ F ++A + LG S+ + K G+ + Sbjct: 271 DEAAARVKKGEDFAKVAAALSDDPNTKDRGGDLGFVSEGLADAAFAKAA--LALKAGEVS 328 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALG 398 + G+ + + P+ V+ + + DIA + + +A +E + + G Sbjct: 329 EPVRTPAGWHLIRADEVVPARKVTLEAARLDIARELLARDRAQALAREKAQAALDAARKG 388 Query: 399 TSMDEI------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 ++DE+ ++ + + + V + +L Sbjct: 389 KALDELFPPAGKGKQVTLGGTAVAAEETGPFGAGSPVVPRVGAAPELAQAALSAKAGEVL 448 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 P G + V P R E ++ + +K + + +L + +K Sbjct: 449 PKVFDTPSGPVIAVVKLRESPDPAR-FEAERAGIEARLQGMKAEQVRRAWLEELRGK-AK 506 Query: 513 EGKNFRDIGKNLGAS 527 +N +G A+ Sbjct: 507 IEENVALLGAAQPAA 521 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 88/270 (32%), Gaps = 22/270 (8%) Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ ++++ K+++E A ++ ++ +S D D G Sbjct: 250 VLARLAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGGDL----GF 305 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + + + V P G + ++ E +PAR LE D+ ++ Sbjct: 306 VSEGLADAAFAKAALALKAGEVSEPVRTPAG-WHLIRADEVVPARKVTLEAARLDIAREL 364 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF------ 544 A+ ++ + Q L+ +++GK ++ G T + E Sbjct: 365 LARDRAQALAREKAQAALDAARKGKALDELFPPAGKGKQVTLGGTAVAAEETGPFGAGSP 424 Query: 545 -------GYDGISQVFSGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISY 593 + S V K F +G V K+ S E+ + Sbjct: 425 VVPRVGAAPELAQAALSAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEAR 484 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L M + + + + L+ + + + L+ Sbjct: 485 LQGMKAEQVRRAWLEELRGKAKIEENVALL 514 >gi|304387500|ref|ZP_07369689.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC 13091] gi|304338387|gb|EFM04508.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC 13091] Length = 512 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 79/479 (16%), Positives = 172/479 (35%), Gaps = 49/479 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E + G Sbjct: 12 AQILLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE------QAGG 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 64 GSPS--------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIHDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + YE+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNVYEERVARLPANE----AKPSFEQEKAAIENELKMKKAVADFNKAKEKLGDDAFNHPA 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ T+ F E K + T+A++ + K + L+ G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLAQLSGGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAITPPDDIAA 468 >gi|261392500|emb|CAX50051.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase D) [Neisseria meningitidis 8013] Length = 512 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E + G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE------QAGG 63 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 S + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 64 GSPS--------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|86158923|ref|YP_465708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775434|gb|ABC82271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 524 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 71/534 (13%), Positives = 167/534 (31%), Gaps = 61/534 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSD----ALFSVSGSSTVVSVGRQKVPFSS 55 ML+I+R + ++ + ++ + V F I +G + V + + + Sbjct: 1 MLDIVRANKKGILSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ L Q+ G E A +GL ++ + LV Q G+ V Sbjct: 61 FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQAMGVLVDRELALQEARRRGVVVTDREV 120 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 + + P F ++ +F ++ ++ + + + L ++G V ++ Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + ++ ++ A S+A + ++ Sbjct: 180 ATEVRAQWAASADRAALKFVRFPISAAQAEVKVSDADAKAFADR---------------- 223 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEA 283 ++A Y++N ++Y V ++ +K+ Sbjct: 224 -------------EGARVEAFYKENADRYDQKAKVHVRHVLARVAPGASADEEAAARKKI 270 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 DEA +KKG+ F ++A + LG S+ + K G + Sbjct: 271 DEAAARVKKGEDFAKVAAALSDDPNTKDRGGDLGFVSEGLADAAFAKAA--LALKAGQVS 328 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALG 398 + G+ + + P+ V+ + + DIA ++ +A +E + + G Sbjct: 329 EPVRTPAGWHLIRAEEVVPARQVTLEAARLDIARELVARDRAQALAREKAQAALDAARKG 388 Query: 399 TSMDEI------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 ++DE ++ + L V I +L Sbjct: 389 KALDEQFPPAGKGKQVTLGGTVLAAEQTGPFGAGSPVVPRIGAAPELAQAALTAKAGEVL 448 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 P G + V ++ + E ++ + +K + + L Sbjct: 449 PKVFDTPSGPVVAV-VELRESPDPARFEAERAGIEARLQGMKAEQVRRAWLEDL 501 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 22/270 (8%) Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ ++++ K+++E A ++ ++ +S D D G Sbjct: 250 VLARVAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGGDL----GF 305 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + + + V P G + ++ +E +PAR LE D+ ++ Sbjct: 306 VSEGLADAAFAKAALALKAGQVSEPVRTPAG-WHLIRAEEVVPARQVTLEAARLDIAREL 364 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF------ 544 A+ ++ + Q L+ +++GK + G T + E Sbjct: 365 VARDRAQALAREKAQAALDAARKGKALDEQFPPAGKGKQVTLGGTVLAAEQTGPFGAGSP 424 Query: 545 -------GYDGISQVFSGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISY 593 + + V K F +G V ++ S E+ + Sbjct: 425 VVPRIGAAPELAQAALTAKAGEVLPKVFDTPSGPVVAVVELRESPDPARFEAERAGIEAR 484 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L M + + + + L+ + + + L+ Sbjct: 485 LQGMKAEQVRRAWLEDLRGKAKIEENVALL 514 >gi|325130315|gb|EGC53082.1| hypothetical protein NMBOX9930304_0938 [Neisseria meningitidis OX99.30304] Length = 512 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPTNE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|226329062|ref|ZP_03804580.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198] gi|225202248|gb|EEG84602.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198] Length = 276 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 5/244 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ IR + KI L V+ + F++ G+ LFS SG + V K+ S ++ Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRSQLEQAY 59 Query: 61 KQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +Q + Q +G + + G + ++ LD L++ A LDQF + +G+ A ++ Sbjct: 60 QQRRAQLQQDMGENFAALASSEEGQKLIRQQALDLLINQALLDQFAQKLGISAGDQQIRD 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F + KF + +V L I+ + + + L + G + Sbjct: 120 AIFALPYFQ-TNGKFDNKKYVDLLKGNNIDADAFAEGIRQNLINQQLKFSIQGTDFALDS 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + ++R+V L+ + S+ + ++E+ + APE +ISYI Sbjct: 179 EVKEFAGLMLQSRNVRLASLDIQPFLEKETASDEEVKAFYEQNNQMFIAPEQFKISYIQL 238 Query: 238 DVHE 241 + + Sbjct: 239 NAQK 242 >gi|121634931|ref|YP_975176.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis FAM18] gi|120866637|emb|CAM10388.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis FAM18] gi|325132578|gb|EGC55271.1| hypothetical protein NMBM6190_0987 [Neisseria meningitidis M6190] gi|325138351|gb|EGC60920.1| hypothetical protein NMBES14902_1084 [Neisseria meningitidis ES14902] gi|325142491|gb|EGC64895.1| hypothetical protein NMB9615945_0995 [Neisseria meningitidis 961-5945] gi|325198371|gb|ADY93827.1| conserved hypothetical protein [Neisseria meningitidis G2136] Length = 512 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAMQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|240080666|ref|ZP_04725209.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19] gi|268596788|ref|ZP_06130955.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268550576|gb|EEZ45595.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 512 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 83/494 (16%), Positives = 182/494 (36%), Gaps = 52/494 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 66 PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPDVSLADSIFS--LAKKGDFTPVIHGSFGY 348 + +S +P+ +L +++FS + KK + V+ + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPE-NLINAVFSDDVLKKKHNSEVLTTNSET 350 Query: 349 V-IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + ++ + F+E K + T+A++ + K + L G ++D Sbjct: 351 AWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWSE 410 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 ++ + A + R+ G P+ + P Sbjct: 411 VSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPEDIAA-- 468 Query: 468 IKESIPARDRKLEE 481 +P + L + Sbjct: 469 ---QLPPAKQALAQ 479 >gi|254805018|ref|YP_003083239.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha14] gi|254668560|emb|CBA06033.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha14] gi|319410487|emb|CBY90848.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase D) [Neisseria meningitidis WUE 2594] Length = 512 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 86/518 (16%), Positives = 186/518 (35%), Gaps = 72/518 (13%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD---- 405 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + V G + + Y E L + + + + LP + + V Sbjct: 406 ------VKWSEVSVLGAQQARQSMPPEAYAE--LLKAKPANGKPAYVRLIGLP--ASVIV 455 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 +++ P D+ K A AN Sbjct: 456 EVQAVTPP---------DDIAAQLPLAKQALAQQQSAN 484 >gi|325128356|gb|EGC51240.1| hypothetical protein NMXN1568_0938 [Neisseria meningitidis N1568] Length = 512 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 160/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GLS---------RDAVFQSLLQRAYLKQGSKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPTNE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|309378619|emb|CBX22797.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 512 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 159/429 (37%), Gaps = 51/429 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S + Sbjct: 1 MFHSIEKYKT--PAQVLLGLIALTFVGFGVS--TVSHPGADYIVRVGDEKISEQSLNAAV 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E Q G + + +L+ A L Q + +G+ ++ I Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH KF H + L++ ++E ++++ + ++V + G+ + + Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++ Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299 + K +S E++ YE+ + + E + F +K A E +KK F + Sbjct: 223 DFADKQTVSETEVKNAYEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKA 278 Query: 300 AEEQGKSL----------------------SDISLGSFSKEYIPD----VSLADSIFSLA 333 E+ G + +S +P+ +D + Sbjct: 279 KEKLGDDAFNHPSSLDEAAKNSGLKVETQETWLSRQDAQMSGLPENVINAVFSDDVLKKK 338 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + + + + ++ T+ F E K + +A++ + K + Sbjct: 339 HNSEVLSINN-EIAW-VVRAKEVREEKTLPFAEAKDAVRQAYVRAEAAKLAENKAKEVLT 396 Query: 394 FLALGTSMD 402 L G ++D Sbjct: 397 QLNGGKAVD 405 >gi|261401210|ref|ZP_05987335.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ATCC 23970] gi|269208789|gb|EEZ75244.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ATCC 23970] Length = 512 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 76/429 (17%), Positives = 161/429 (37%), Gaps = 51/429 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I K A++ L ++ + F+ +G+S A S G+ +V VG +K+ S + Sbjct: 1 MFHSIEKYKT--PAQVLLGLIALTFVGFGVSTA--SRPGADYIVQVGDEKISEQSLNAAV 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E Q G + + +L+ A L Q + +G+ ++ I Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH KF H + L++ ++E ++++ + ++V + G+ + + Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++ Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQL 299 + K +S E++ YE+ + + E + F +K A E +KK F + Sbjct: 223 DFADKQAVSETEVKNAYEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKA 278 Query: 300 AEEQGKSL----------------------SDISLGSFSKEYIPD----VSLADSIFSLA 333 E+ G + +S +P+ +D + Sbjct: 279 KEKLGDDAFNHPSSLDEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKK 338 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + + + + ++ T+ F E K + T+A++ + K + Sbjct: 339 HNSEVLTI-NSETAW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLT 396 Query: 394 FLALGTSMD 402 L G ++D Sbjct: 397 QLNGGKAVD 405 >gi|218768240|ref|YP_002342752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis Z2491] gi|121052248|emb|CAM08573.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis Z2491] gi|254670088|emb|CBA04992.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha153] gi|325204222|gb|ADY99675.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 512 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|325144618|gb|EGC66917.1| hypothetical protein NMBM01240013_1034 [Neisseria meningitidis M01-240013] gi|325205986|gb|ADZ01439.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] Length = 512 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S + + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEQSLNAAVQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|254671966|emb|CBA04388.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis alpha275] Length = 512 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVTDFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|15677110|ref|NP_274262.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria meningitidis MC58] gi|7226478|gb|AAF41619.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria meningitidis MC58] gi|316985097|gb|EFV64050.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis H44/76] gi|325140532|gb|EGC63053.1| hypothetical protein NMBCU385_0927 [Neisseria meningitidis CU385] gi|325200131|gb|ADY95586.1| conserved hypothetical protein [Neisseria meningitidis H44/76] Length = 512 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 159/416 (38%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|88608708|ref|YP_506523.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama] gi|88600877|gb|ABD46345.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama] Length = 594 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 105/600 (17%), Positives = 233/600 (38%), Gaps = 43/600 (7%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 +A + S S V SVGR+K+ F++ +K+ F + + + +G+ + +L Sbjct: 34 NASITGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFDFRLTDTQLKDIGVGRIVLT 93 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 L+ ++Q + +GL D +I ++P+F ++ KF L R + E+EY Sbjct: 94 TLIQDKVIEQLFKQMGLHIDTSIAIDKIKKNPVF-NENGKFDRAKLDDFLDRNDLTEREY 152 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 I + + + V G F L + F + + V ++ +P P+ + Sbjct: 153 IRKVKREIGKDFVFGPFFNIQGEYGKLAELFYNFEYGLKEVSIAKVDKNALPTPPVPTES 212 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIR 270 L ++E+ KD + + EY+ + IL + + +E++++++Q +E + Sbjct: 213 ELVSFYEENKDKFFSDEYRAAACILISEDNVKPELVEVADEDVQKSFE----SLQLGKRY 268 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 + + F ++ EA+ +S+ +F + + S+ + ++P D Sbjct: 269 YINYVEFDSRDEAERMKRSISANPEFYA----NDLTRIEGSVKTDLPAFLPKNIQWDGNK 324 Query: 331 SLAKKGDFTPVIHGSF-GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 L K G F Y + + ++ P E K+ N++R K+ + Sbjct: 325 WLLAK------YMGKFYIYTVVKIVSVSP-------EEKEKNLNELRKFMRLNKLNQIVD 371 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 + + + LG I + L + D GK+V E+LL +VF + Sbjct: 372 EIRDKVHLGEDWKVIVGKYGGEIDYLTPMSRLSLDKDGKKVK---VSEELLEQVFSSSEG 428 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + V ++ ++ P + +V + V + + + A +L+ + Sbjct: 429 AISE--VITGKNEFILFRVTSVEPVAKQPFSKVRSKVMEALSKKRQMQV----ALELLQK 482 Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569 + G+ + L I + N + + I++VF E+ + Sbjct: 483 QQERGEKTEKVA-------LYRPGIAKRKGLNYHYPDEFIAEVFQIDSGGTTKV-FESDV 534 Query: 570 SYVVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + KV ++ + + + + L + + +L + Q+ V V+ +LI+ L Sbjct: 535 EFFSGKVLGNRNPELDKSIVAEIEAKLREEIGFSMLSELTQAAMKQFKVKVNSDLIKDLL 594 >gi|161870081|ref|YP_001599251.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442] gi|161595634|gb|ABX73294.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442] Length = 512 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S + + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEQSLNAAVQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 SPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|325134515|gb|EGC57160.1| hypothetical protein NMBM13399_0963 [Neisseria meningitidis M13399] Length = 512 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + + + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNSVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPANE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|194098675|ref|YP_002001737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|240016542|ref|ZP_04723082.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA6140] gi|240112969|ref|ZP_04727459.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|240118019|ref|ZP_04732081.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|240123573|ref|ZP_04736529.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|240125755|ref|ZP_04738641.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|240128277|ref|ZP_04740938.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|260440465|ref|ZP_05794281.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2] gi|268599050|ref|ZP_06133217.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|268603732|ref|ZP_06137899.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|268682203|ref|ZP_06149065.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|268684354|ref|ZP_06151216.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|268686675|ref|ZP_06153537.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|291043765|ref|ZP_06569481.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|193933965|gb|ACF29789.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|268583181|gb|EEZ47857.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|268587863|gb|EEZ52539.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|268622487|gb|EEZ54887.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|268624638|gb|EEZ57038.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|268626959|gb|EEZ59359.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|291012228|gb|EFE04217.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 512 Score = 207 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 66 PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ + F+E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPEDIAA- 468 Query: 467 QIKESIPARDRKLEE 481 +P + L + Sbjct: 469 ----QLPPAKQALAQ 479 >gi|239998983|ref|ZP_04718907.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|268594831|ref|ZP_06128998.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268548220|gb|EEZ43638.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|317164277|gb|ADV07818.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 512 Score = 207 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 66 PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ + F+E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTPPEDIAA- 468 Query: 467 QIKESIPARDRKLEE 481 +P + L + Sbjct: 469 ----QLPPAKQALAQ 479 >gi|325202068|gb|ADY97522.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] Length = 512 Score = 207 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E +L F +K A E +KK F + E+ Sbjct: 236 KNAFEERVARLPANE----AKLSFEQEKAAVENELKMKKAVADFNKAKEKLSDDAFNHPA 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLSINN-EI 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + +A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|254796993|ref|YP_003081830.1| Rotamase family protein [Neorickettsia risticii str. Illinois] gi|254590229|gb|ACT69591.1| Rotamase family protein [Neorickettsia risticii str. Illinois] Length = 594 Score = 207 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 108/601 (17%), Positives = 232/601 (38%), Gaps = 45/601 (7%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 +A S S V SVGR+K+ F++ +K+ GF + + + +G+ + +L Sbjct: 34 NASIMGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFGFGLTDTQLKDIGVGRIVLT 93 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 L+ ++Q + +GL D +I ++P F ++ KF L R + E+EY Sbjct: 94 TLIQDKVIEQLFKQMGLHIDTSIAIDKIKKNPAF-NENGKFDRAKLDDFLDRNDLTEREY 152 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 I + + V G F L + F + R V +N +P + P+ + Sbjct: 153 IRKVKCEIGKDFVFGPFFNIQGEYVKLAELFYNFEYGLREVSITKVNKNALPILPVPTES 212 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIR 270 L ++E+ KD + + EY+ YIL + + +EI+++++Q +E + Sbjct: 213 ELVSFYEENKDKFFSDEYRTAEYILISEDNVKPELVEIADEDVQKSFEN----LQLGKRY 268 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--S 328 + + F ++ EA+ +S+ +F + + S+ + ++P D Sbjct: 269 YINYVEFDSRDEAERMKKSISANPEFYA----NDLTRIEGSVKTDLPAFLPKNIQWDGNK 324 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F G F + Y + + ++ P E K+ N++R K+ + Sbjct: 325 WFLAKYMGKF-------YVYTVVKIVSVSP-------EEKEKNLNELRKFMRLNKLNQIV 370 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 + + G I + L V D +G++V E+LL +VF + Sbjct: 371 DEIRSEVHSGEDWKAIVGKYGGEIDYLVPVCRLSLDKEGRKVK---VSEELLEQVFSIGE 427 Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 + ++ ++ P + +V + V K + + A +L+ Sbjct: 428 GAIGETI--TTKNEFILFRVTSIEPVAKQPFNKVRSKVIKALSKKRQMQV----AFELLQ 481 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568 + + G+N + L +I + + + + I++VF E+ Sbjct: 482 KQQENGENTEKVA-------LYRPEIAKRKGLSYHYPDEFIAEVFQIDSGGTTKV-FESD 533 Query: 569 LSYVVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + KV ++ + E + + L + + +L + Q+ V V+ +L++ Sbjct: 534 VEFFSGKVLGNRNPELDESIVAEIEAKLREEIGFSMLSELTQAAMKQFKVKVNSDLVKDL 593 Query: 627 L 627 L Sbjct: 594 L 594 >gi|59801181|ref|YP_207893.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA 1090] gi|240115723|ref|ZP_04729785.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|268601403|ref|ZP_06135570.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|59718076|gb|AAW89481.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA 1090] gi|268585534|gb|EEZ50210.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] Length = 512 Score = 207 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 66 PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ + F+E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEAQAVTPPEDIAA- 468 Query: 467 QIKESIPARDRKLEE 481 +P + L + Sbjct: 469 ----QLPPAKQALAQ 479 >gi|308389331|gb|ADO31651.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis alpha710] gi|325136276|gb|EGC58884.1| hypothetical protein NMBM0579_1013 [Neisseria meningitidis M0579] gi|325208178|gb|ADZ03630.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 512 Score = 207 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 71/416 (17%), Positives = 158/416 (37%), Gaps = 49/416 (11%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E Q G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISDHSINNAIQNE-----QADGG 64 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + +L+ A L Q + +G+ ++ I P FH + KF Sbjct: 65 GPS---------RDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIVDDPNFHDANGKFD 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E +L F +K A E +KK F + E+ Sbjct: 236 KNAFEERVARLPANE----AKLSFEQEKAAVENELKMKKAVADFNKAKEKLSDDAFNHPA 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLSINN-EI 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + ++ T+ F E K + +A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAKDVLTQLNGGKAVD 405 >gi|293399048|ref|ZP_06643213.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62] gi|291610462|gb|EFF39572.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62] Length = 512 Score = 207 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 79/495 (15%), Positives = 176/495 (35%), Gaps = 54/495 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ IA P FH + KFS Sbjct: 66 PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIADDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ + F+E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEAQAVTPPEDIAA- 468 Query: 467 QIKESIPARDRKLEE 481 +P + L + Sbjct: 469 ----QLPPAKQALAQ 479 >gi|313668353|ref|YP_004048637.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640] gi|313005815|emb|CBN87269.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica 020-06] Length = 512 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 71/425 (16%), Positives = 159/425 (37%), Gaps = 43/425 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S + Sbjct: 1 MFHSIEKYKT--PAQVLLGLIALTFVGFGVS--TVSRPGADYIVRVGDEKISEQSLNAAI 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + E Q G + + +L+ A L Q + +G+ ++ I Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P FH KF H + L++ ++E ++++ + ++V + G+ + + Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++ Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIR---TVEQLVFPNQKEADEAFQSLKKGK--- 294 + K +S E++ +E+ + + E + E+ N+ + +A K K Sbjct: 223 DFADKQAVSETEVKNAFEERVARLPANEAKPSFEQEKASVENELKMKKAVADFNKAKEKL 282 Query: 295 ---------KFIQLAEEQGKSLS----DISLGSFSKEYIPD----VSLADSIFSLAKKGD 337 + A+ G + +S +P+ +D + + Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + + + ++ + F E K + T+A++ + K + L Sbjct: 343 VLTI-NSETAW-VVRAKEVREEKNLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNG 400 Query: 398 GTSMD 402 G ++D Sbjct: 401 GKAVD 405 >gi|240014107|ref|ZP_04721020.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI18] gi|240121669|ref|ZP_04734631.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID24-1] gi|254493775|ref|ZP_05106946.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291] gi|226512815|gb|EEH62160.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291] Length = 512 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 175/495 (35%), Gaps = 54/495 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+ + E G Sbjct: 12 AQVLLGLIALTFVGFGVS--TVSHPGADYIVQVGDEKISEHSINNAMQNE----QADGGS 65 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + +L+ A L Q + +G+ ++ I P FH + KFS Sbjct: 66 PW----------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 H + L++ ++E ++++ + ++V + G+ + +Q R NR++ Sbjct: 116 HALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLTQVNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 N A S A L +++ K +Y P+ ++ Y+ ++ + K +S E+ Sbjct: 176 SHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSL----- 307 + +E+ + + E + F +K A E +KK F + E+ G Sbjct: 236 KNAFEERVARLPAHE----AKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPS 291 Query: 308 -----------------SDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSF 346 + +S +P+ +D + + + + Sbjct: 292 SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTI-NSET 350 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + ++ + F+E K + T+A++ + K + L G ++D Sbjct: 351 AW-VVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNRGKAVDVKWS 409 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 ++ + A + R+ G P+ + P Sbjct: 410 EVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEAQAVTPPEDIAA- 468 Query: 467 QIKESIPARDRKLEE 481 +P + L + Sbjct: 469 ----QLPPAKQALAQ 479 >gi|223040376|ref|ZP_03610651.1| WbnF [Campylobacter rectus RM3267] gi|222878334|gb|EEF13440.1| WbnF [Campylobacter rectus RM3267] Length = 487 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 87/409 (21%), Positives = 159/409 (38%), Gaps = 18/409 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K + V I++ + F+ WG D +VS +S+V VG + + F Sbjct: 1 MITWMQKHRKYLVVTIWVSTIAFVGAGFVGWGAYD--LNVSRASSVAKVGHRNISIQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 N + Q +Q ++ ++A +G++ L+ LV+ A L F +D+GL + + Sbjct: 59 NRYGQLHAYYNQLFDGQLSEKKASELGIENLALEELVNDALLLNFADDLGLGVNDEDIVK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F + KF +++ + L R I E EY D ++ + + ++ Sbjct: 119 YIVADQNF-YVNGKFDKELYKNTLKRARITESEYEDSLKNVILLDKLRHALNLPAKEQDI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A + S+ + + + +E+ K++Y+ ++ Sbjct: 178 NMLTASFLMQDKISMQVV----EAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDTKFI 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + EL Y +NK +Y + + E ++ D + KK Sbjct: 234 PTISSDANTT----ELMEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEE 289 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++ + +DIS+ + + SL AKKGD GY+I V I Sbjct: 290 YLKIKKDEKQADISITTLED----NASLPIDELKSAKKGDTLKPFEYEDGYMIVKVKEIV 345 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 +SF E K I + K E V+ K L E GT + ISR Sbjct: 346 APRVMSFDEAKDQILELYKEQKTQETVEAKAKELLEKGFQGTDIGFISR 394 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 95/265 (35%), Gaps = 52/265 (19%) Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLV 418 F+ VK ++ + + + E+Y +++ + S+ + + +L Sbjct: 262 KIKEFEAVKDEVLKDYNLKQTKKVALEEYLKIKKDEKQADISITTLEDNASLPIDELKSA 321 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 KG + Y + YM V++KE + R Sbjct: 322 K------KGDTLKPFEY------------------------EDGYMIVKVKEIVAPRVMS 351 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 +E + + +K KT E V +KA +L+ + + ++ + + Sbjct: 352 FDEAKDQILELYKEQKTQETVEAKAKELLEKGFQG----------TDIGFISRDTVKAES 401 Query: 539 NENKFFGYDGISQVF--SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596 ++ ++++F SG + V G VV+++T K+ +++ ++ +TQ Sbjct: 402 GLSEGEFNIFVNRLFEKSGKKDYVSL-----GNKAVVYEITEQKLSNSEKEKEYKEIITQ 456 Query: 597 MMN----KDLLDSVIAYLKSQYSVT 617 + +L+ + L +Y V Sbjct: 457 NVGYLKNNELIRDLSGALSKRYKVE 481 >gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740] gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes] Length = 485 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 154/398 (38%), Gaps = 26/398 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K R V I++ V+ F+ WG A S SS V VG K+ + Sbjct: 1 MINWMQKHKRYLVITIWISVIAFVGAGFVGWG---AYSFSSSSSWVAKVGETKITQTELE 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + ++ +G ++ E+A+++G++K+ LD+L+S + F +D+GL V Sbjct: 58 QEYARLYEFYNKIVGGSLDKEQAKALGIEKQALDSLISKTLMLNFAKDVGLRVSDEEVAK 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + + FH + KF + L + L + + + Sbjct: 118 AVVKMEAFH-VEGKFDDKTYRKVLEENHYKPAAFERALHDSLLLEKLGVILTPSVTELEK 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 A + + S+ + S+ + ++ + +D Y I Y L Sbjct: 177 ESLGAAFYIQDKLSIKTL----SSTSLKPVVSDEEVKSFWGENQDVYMTDRVYDIIYSL- 231 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--QKEADEAFQSLKKGKK 295 K +I S++EL+ Y+ K Y + R +E + +K+ +A K Sbjct: 232 ---SKNDEISASDEELKIHYDSFKNNYLGLDGRPLEFELARTRVEKDYKDAQAEKNALKT 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI---FSLAKKGDFTPVIHGSFGYVIAH 352 +I+ + + SL D +L D + S AK G+ + GY+ Sbjct: 289 YIEFKKSPTPEGTRYSLAE------SDETLGDELLYRLSEAKVGETLKPVPSPEGYLTIK 342 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + IK S + F+ K+ N + K + ++E K+ Sbjct: 343 LMGIKESEPMKFEAAKELARNDLLAQKKRDLLEEMAKK 380 >gi|46204905|ref|ZP_00049316.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 294 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 10/297 (3%) Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLAL 397 + + G FG V+ V+ I+P F EVK +I ++ + + E + + +E+ A Sbjct: 2 SEPVKGRFGTVLLRVTGIEPGDIKPFDEVKDEIRKEVALRRVREGEFDKAQDAIEDARAS 61 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 + EI++ + + +P VD G D GK V IP KE L F D + + Sbjct: 62 AKPLAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAFRADVG-NDTEALR 120 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 G +W + + P+ ++ L EV + K W + A+ + +K+ +L K G+ Sbjct: 121 TKTGGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKELTERLEK-GEAI 179 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 + + G L + R ++ G D + ++F+ PV P +G VFKVT Sbjct: 180 EAVAQETGLPLKQVADLGRNQTKDDLSG-DIVERIFTTPVGKAASAP--SGEGRAVFKVT 236 Query: 578 NSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 + V + ++ L + D+L IA ++ V V+ ++R L GE Sbjct: 237 AATVPAFVAGTPSDRQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRALGGE 293 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 34/262 (12%) Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK--------SLSDISLGSFSKEYIPDVSLA-DSIF 330 K D + K ++A+++G E IPD + F Sbjct: 49 DKAQDAIEDARASAKPLAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAF 108 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 D + + G + V I PS EV+ + + ++++ K Sbjct: 109 RADVGNDTEALRTKTGGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKE 168 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 L E L G +++ +++ + L V G++ +++ ++ R+F P+ Sbjct: 169 LTERLEKGEAIEAVAQETGLP---LKQVADLGRNQTKDDLSG-----DIVERIFTT--PV 218 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 K + +G ++ + A V + + + VL Sbjct: 219 GKAASAPSGEGRAVF----KVTAATVPAF------VAGTPSDRQLVTSLRTALADDVL-- 266 Query: 511 SKEGKNFRDIGKNLGASLLTTN 532 G+ ++ K+ G ++ T Sbjct: 267 ---GEFIAEVQKSAGVNVNQTA 285 >gi|310820639|ref|YP_003952997.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] gi|309393711|gb|ADO71170.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] Length = 519 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 89/524 (16%), Positives = 182/524 (34%), Gaps = 69/524 (13%) Query: 8 ASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQ 62 +R ++ + +V + V F + +G F V S +++P F + Sbjct: 2 NARKVLSLVGIVAIAVVFTLQFGPGSTGFGSGRGPVVPSAVAVVNGKEIPLRDFSRVYAG 61 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 +L + + G + AR L +++D LV+ L Q E G+ + I + Sbjct: 62 QLNSLRNR-GVPIPESYARQ-SLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHEN 119 Query: 123 PLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 FH KD +F+ + + L E +Y + + L+ ++ + G S+ + Sbjct: 120 ADFH-KDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVSDDEVRA 178 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 V + A P+ A L ++ + + Sbjct: 179 RYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAH-------------------- 218 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288 NDE+ YE N+ Y E Q++ + A+ + Sbjct: 219 ---------NDEISTYYESNRFMYQQAERAKARQILVKLAPDAAAQQKAEAKSRAEALHK 269 Query: 289 SL-KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + + GK F +A E+ + S LG + + + +LA+++F+LA G + I Sbjct: 270 EVTEGGKDFATVARERSEDPGTKASGGDLGWVERASL-EPTLAEAVFALAPNG-VSQPIE 327 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALGTSMD 402 G+ + V + + +E +IA + + KA E K ++ L G ++ Sbjct: 328 TKLGWHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLKGGQTLQ 387 Query: 403 EI---------SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++ + + V+ G+ V + L F P D Sbjct: 388 QLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAPGPQVLD 447 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 L +G ++ Q+ E + D + ++++ + K E Sbjct: 448 QVFPLSEG-FVVAQVTERVKPSDETFTQKKDELREQTRRAKQIE 490 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 73/500 (14%), Positives = 152/500 (30%), Gaps = 76/500 (15%) Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + + G+ Q+ ++ V +L+ +PS+ L + + D Sbjct: 62 QLNSLRNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHENAD 121 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ ++ Y L+ Y + KY R + Sbjct: 122 FHKDGQFNFEQY---------------KRALRDYYRTTEPKYEEELRRQL---------A 157 Query: 283 ADEAFQSLKKGK--KFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLAD-SIFSLA 333 A + Q + G ++ K + L + +P + A F A Sbjct: 158 AQKMLQVVNSGAVVSDDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKA 217 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE- 392 + + + + + + I ++ A+++ E R E Sbjct: 218 HNDEISTYYESN------RFMYQQAERAKA-----RQILVKLAPDAAAQQKAEAKSRAEA 266 Query: 393 ---EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 E G ++R + P +G D+ E A++ E L P Sbjct: 267 LHKEVTEGGKDFATVARERS----EDPGTKASGGDLGWVERASL---EPTLAEAVFALAP 319 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + G + V+++E A+D+KLEE ++ + A+E++ A + L Sbjct: 320 NGVSQPIETKLG-WHVVKVEEKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALA 378 Query: 510 YSKEGKNFRDI---GKNLGASLLTTNQINRMDNENK-------------FFGYDGISQVF 553 K G+ + + K +L R + + F Sbjct: 379 SLKGGQTLQQLFPPEKEGQPALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAF 438 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609 S P V +VV +VT Q+KD+ + ++ +S + Sbjct: 439 SAPGPQVLDQVFPLSEGFVVAQVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKA 498 Query: 610 LKSQYSVTVHDNLIQRYLDG 629 L+ +V ++ IQ + Sbjct: 499 LRETGTVVENNEAIQTIVGA 518 >gi|157737622|ref|YP_001490305.1| hypothetical protein Abu_1381 [Arcobacter butzleri RM4018] gi|157699476|gb|ABV67636.1| conserved hypothetical membrane protein [Arcobacter butzleri RM4018] Length = 485 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 166/426 (38%), Gaps = 21/426 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + V I++ + F+ WG D V +G ++V + Sbjct: 1 MITWMQRHKKWLVITIWISTIAFVGAGFVGWGSYDYGKQGG---VVAKIGDREVTVEEYQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + S+ G + N++ A +GL + ++ + + +GL+ + Sbjct: 58 QEYSNLYSQYSRMFGDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIAR 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E+ + F KD KF D ++ L + + K + + + L V +F + P++ Sbjct: 118 ELLKYEAF-FKDGKFDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLFE--VNPTSW 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + F + +L++ V L +++E K++Y + ++Y L Sbjct: 175 EVENISKLLFLEDDITIKILSSNDV--KVTVDEEGLKKYWEDNKNSYMS----EVTYDLE 228 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEADEAFQSLKKGKK 295 + E++ +YEK K Y + I+++E+ + + D+ F + K Sbjct: 229 IKEIPFINSNSTEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKI 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +++L +++ K ++ + +P + K G+ + Y+I V Sbjct: 289 YLKLKKDEEKFDKTLN---ILESKLPYSQENIAKIKEVKNGEVVKPFMENGKYIIVKVVK 345 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + PS + F++ K ++K++E + E GT + ++R KI + Sbjct: 346 LNPSKVLDFEQAKAKATQDYEKVLRAQKLQEQA-KAELKDFKGTDIAGVTRTSKIAGLSQ 404 Query: 416 PLVDFA 421 Sbjct: 405 EESTNF 410 >gi|154175271|ref|YP_001408420.1| WbnF [Campylobacter curvus 525.92] gi|112802934|gb|EAU00278.1| WbnF [Campylobacter curvus 525.92] Length = 485 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 75/399 (18%), Positives = 156/399 (39%), Gaps = 28/399 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + V I++ V+ F+ WG D + + +++V +VG + + F Sbjct: 1 MITWMQRNKKYLVVTIWISVIAFVGAGFVGWGAYD--LNNNKATSVATVGHRSISVQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q + + E+A +G++ + ++ L F +DIGL + Sbjct: 59 QKYNQIYEYHNNISDGKLTQEKADELGIENEAFQAVLQENLLLNFADDIGLSVSDDDILK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I F D FS +++ L R IN +Y + + + ++ Sbjct: 119 YIIADKNFQN-DGVFSKNLYYDVLRRARINPNDYEKNLKTAILLDKLYYALNLPATKKDV 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A F + S++ I N + + + + +E K+NY + Y++ Sbjct: 178 EMMMASLFMQDKLSIEMIEANENEIKF----NEDEIKELWESNKNNYMT----KTLYVID 229 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++ + KK +I+ L A Y +NKEKY + + + + DE + + K Sbjct: 230 TLYIESKKDDINQTALSAYYNENKEKYKNSDDKIMPF---------DEVKEEVAKDYNIE 280 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAH 352 Q + + G + ++ ++ FS+ AK GD GY+I Sbjct: 281 QSKTNALEKYIAVKKGELATNGSMSLNEDNATFSIDEIRGAKVGDVIKPFVYDNGYLIVK 340 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + P +S+++ K+ I + K E V+ K Sbjct: 341 IKSTTPPQPMSYEQAKEQILEIYKEQKLKELVENKAKTA 379 >gi|315637398|ref|ZP_07892611.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] gi|315478290|gb|EFU69010.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] Length = 485 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 166/426 (38%), Gaps = 21/426 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + V I++ + F+ WG D V +G ++V + Sbjct: 1 MITWMQRHKKWLVITIWISTIAFVGAGFVGWGSYDYGKQGG---VVAKIGDREVTVEEYQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + S+ G + N++ A +GL + ++ + + +GL+ + Sbjct: 58 QEYSNLYSQYSRMFGDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIAR 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E+ + F KD KF D ++ L + + K + + + L V +F + P++ Sbjct: 118 ELLKYEAF-FKDGKFDKDTYLKVLNQNRLTPKHFEESLKRTLLLQKVQSLFE--VNPTSW 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + F + +L++ V L +++E K++Y + ++Y L Sbjct: 175 EVENISKLLFLEDDITIKILSSNDV--KVTVDEEGLKKYWEDNKNSYMS----EVTYDLE 228 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEADEAFQSLKKGKK 295 + E++ +YEK K Y + I+++E+ + + D+ F + K Sbjct: 229 IKEIPFINSNSTEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKI 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +++L +++ K ++ + +P + K G+ + Y+I V Sbjct: 289 YLKLKKDEEKFDKTLN---ILESKLPYSQENIAKIKEVKNGEVVKPFMENGKYIIVKVVK 345 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + PS + F++ K ++K++E + E GT + ++R KI + Sbjct: 346 LNPSKVLDFEQAKIKATQDYEKVLRAQKLQEQA-KAELKDFKGTDIAGVTRTSKIAGLSQ 404 Query: 416 PLVDFA 421 Sbjct: 405 EESTNF 410 >gi|319957173|ref|YP_004168436.1| hypothetical protein Nitsa_1438 [Nitratifractor salsuginis DSM 16511] gi|319419577|gb|ADV46687.1| hypothetical protein Nitsa_1438 [Nitratifractor salsuginis DSM 16511] Length = 488 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 77/521 (14%), Positives = 175/521 (33%), Gaps = 41/521 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K ++ V I++ + F+ WG S +S++ VG + F Sbjct: 1 MIAWMQKHNKYLVVTIWIATIAFIGAGFVGWGTYKY---GSKASSIAQVGDVSITQEKFN 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ +QK+G + +A+ + L + + + LV A L ++ G+ + Sbjct: 58 FTYQNLYREFAQKLGGKFDDAKAKEMKLPQLVFNRLVMQAYLLNLAKEYGIIVSDKELAE 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 IA P F F ++ + L+ ++ K + L+ ++ + G P Sbjct: 118 AIASLPSFQS-GGAFDKKIYETFLSSRRLSAKAFESILRDDLTIEKLMKLISKGSVPYER 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A + + Y VL+ V A + +++E++K++Y+ P ++ + Sbjct: 177 EVTAAALSVADK--IRYTVLSPSDV--NVSVDTAAVKKYWEQHKESYKTPRRYKLEILWT 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 D I EL+ Y KN Y + + + Q D ++ KK Sbjct: 233 DTSA----INPDEKELEKFYHKNSFDYTDAQGKELSFEAAKAQVLRDYRIKAGKKAALLD 288 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHGSFGYVIAHVS 354 +A ++GK + L+D ++ K G Y V Sbjct: 289 YIALKKGKKQAS----EVKTVAEGSPELSDELWKEIKTHSSGSLIKPKPVGDRYATVKVD 344 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + F K E + + + L + ++ Sbjct: 345 QVIEPKIMDFDTASKLAEKDWLAQAKREALNKKVENL---------------MKNPAALT 389 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 + + + Q L ++F +D K+ + L ++ + + Sbjct: 390 RQSAYLSLTKTEELPPLNLGESLQFLQKLFTSND---KNGIIDLNKKKVVYAIVDQKFEK 446 Query: 475 RDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 D L + + K+ + + + ++ +G Sbjct: 447 GDENLSRSIKATADRIKKSEFEENLLKELSAKYPVKKFVKG 487 >gi|32266279|ref|NP_860311.1| hypothetical protein HH0780 [Helicobacter hepaticus ATCC 51449] gi|32262329|gb|AAP77377.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 499 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 99/491 (20%), Positives = 182/491 (37%), Gaps = 63/491 (12%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62 ++K + V I++ + F+ G+ + + V VG + + ++ + Sbjct: 1 MQKHKKWLVITIWISAIA--FIGAGMVNWGSYGFGLNNDKVARVGAIDIHIPDYQRAYNE 58 Query: 63 ELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 S ++G +++ +A+ +GL + L +V A L F D+GL V EI Sbjct: 59 VFNEYSHIPQLGGMLDEAQAKQLGLPQIALQRVVQQAQLLNFAYDLGLSVSDEEVSNEII 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + ++ K+ FSH+++ L ++ E+ + K L + + + S+L + Sbjct: 119 NAKVYVDKEGHFSHEIYKQALKERQMSPSEFEEIIRKSLLIQKIFSVMNLNVSQSSLQIP 178 Query: 181 -------QAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRI 232 + + D +++ + V +A ++ L ++EK DN++ P I Sbjct: 179 MVSVTPLEIAALEMADSVRDRLMVKSIPVTQVAFSSTDDELKAFWEKNADNWKTPMEFHI 238 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-------------IRTVEQLVFPN 279 YI + S + L YE K Y + IR V++L Sbjct: 239 EYIFVPFNA----QSPSEEALNKHYEDFKSDYLDNDGHLMSMEQSREKLIRDVQKL--EA 292 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 Q A ++ LK G +QGK L+ F + D+ +AD +A+ G Sbjct: 293 QSLAKREYRDLKNGS-------KQGKILTLKDNERFFIKNGVDLVVAD--MKVAQVGQVL 343 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 I G+V + + K S SF E K + TK E + + + + A GT Sbjct: 344 KPIEADEGFVTLKLLDKKESVNKSFDEAKSAVKEMYEHTKRKESLVKLAQESVKNFA-GT 402 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + I R + L I K L +VFG D L Sbjct: 403 DIGFIDRFYNGAILTL----------------DINQKMHFLSQVFGSQDKEGY----VLF 442 Query: 460 DGSYMWVQIKE 470 D + ++ E Sbjct: 443 DDKVVLYRVLE 453 Score = 43.8 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 41/264 (15%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT--SMDEISRREKIVSID 414 +S ++ ++ + ++ +A K +Y+ L+ G ++ + R +D Sbjct: 269 NDGHLMSMEQSREKLIRDVQKLEAQSLAKREYRDLKNGSKQGKILTLKDNERFFIKNGVD 328 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 L + D + Q+L + D ++ +++ + + Sbjct: 329 LVVADM-----------KVAQVGQVLKPIEA--------------DEGFVTLKLLDKKES 363 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 ++ +E + VK+ ++ K E + A + V + G + I + ++LT + Sbjct: 364 VNKSFDEAKSAVKEMYEHTKRKESLVKLAQESVKNF--AGTDIGFIDRFYNGAILTLDIN 421 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 +M ++ FG S E F V+++V P +++ Sbjct: 422 QKMHFLSQVFG--------SQDKEGYVLF----DDKVVLYRVLEQSSVPKDKENNITMIA 469 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTV 618 + +LD++ L Y T+ Sbjct: 470 KNIKYGAVLDTLAENLNKTYKTTI 493 >gi|301168101|emb|CBW27687.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus SJ] Length = 495 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 65/408 (15%), Positives = 142/408 (34%), Gaps = 50/408 (12%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K S IF+ ++ + F+ G + ++V VG + + + + ++L Sbjct: 9 KKSSNIFVTIFIGLIVISFMFTG---YQSLTTSPNSVAKVGDEFIKVEEYQREYNRQLEF 65 Query: 67 ISQKIGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 +G + +++ + + + L NLV + +G+ + EI R P F Sbjct: 66 FRNILGGKDLTTQQIQQFRIKETALSNLVQLKLTLILGDKVGVIPSSEEIKTEIKRQPYF 125 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + +FS + + LA +N ++ + R M S L + F Sbjct: 126 Q-VNGQFSINRYKDLLAANRMNPAQFEESIKDQ-VRGMNSDAIFTSMPISESYLKDVENF 183 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + + I ++ + SN +T++ + R Sbjct: 184 RSQKIEANIIEIDKEALRKKLTISNDEITKYLADETNANR-------------------- 223 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---------GKKF 296 +Q+ + + K E ++F + D+ Q LK F Sbjct: 224 -------VQSLFNERKPTLDQKEEVKARHILFKTDGKNDK--QKLKAITTLRGKLTKSNF 274 Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 I A+ E+ + L F++ + F L K G + + FGY I + Sbjct: 275 ISQAKQHTEEEAGKSTGGDLRWFTRGAMV-PEFEKVAFEL-KPGTISRPVKTPFGYHIIY 332 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V + K + + +E K +A+++ +++V+ ++ +A + Sbjct: 333 VEDKKEAKEATLEEFKNQLASELIRKTKNDEVEAMATEAKKEVASAAN 380 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 100/268 (37%), Gaps = 19/268 (7%) Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 F E K + + + K D K ++ L T++ + +S + Sbjct: 228 FNERKPTLDQKEEVKARHILFKTDGKNDKQKLKAITTLRGKLTKSNFISQAKQHTEEEAG 287 Query: 424 DVKGKEV------AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G ++ A +P E++ F + P + V P G ++ +++ A++ Sbjct: 288 KSTGGDLRWFTRGAMVPEFEKVAFEL----KPGTISRPVKTPFGYHIIY-VEDKKEAKEA 342 Query: 478 KLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 LEE + + E ++++A + V + + + K G + + +I Sbjct: 343 TLEEFKNQLASELIRKTKNDEVEAMATEAKKEVASAANSSRKLNALKKKYGIKIELSKEI 402 Query: 535 NRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDK 589 +++D + ++ +F ++ + + + + VV K + + D+ Sbjct: 403 SKLDGSTGQIQLEAANLNDIFKKGLDQSELYTFDRASNIVVVKTSKFDNKESVNEESMDE 462 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 L +++K L ++ L++ +V Sbjct: 463 RNRSLRNILSKKLKQDILKDLEASVTVK 490 >gi|118475291|ref|YP_891759.1| putative peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter fetus subsp. fetus 82-40] gi|118414517|gb|ABK82937.1| putative peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter fetus subsp. fetus 82-40] Length = 485 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 77/424 (18%), Positives = 156/424 (36%), Gaps = 21/424 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++K + V I++ + F+ WG D + + +++V VG + + F Sbjct: 1 MLTWMQKHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNSNRATSVAKVGNRNITIQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ S E+A +GLD+ L L+ +++DIGL + Sbjct: 59 KTYSNLYNYYSSLSEGKFTQEQADEMGLDRIALQRLIQENLFLNYVDDIGLMVSKEELIA 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + F D KF + L R I K++ + T L ++L Sbjct: 119 ALTSDEGFQ-VDGKFDKSRYEDTLKRARITPKDFENELTNKLLLNKFFDAINLKTNQTDL 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + F + S++ I + + L +EK K+ Y + + L Sbjct: 178 DILASSYFMEDKVSINIIKADKNSI----SVDENELKDLWEKSKNRYLT----KSKFELQ 229 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + I++++ L+ +E+N+ Y + + + + D + +K Sbjct: 230 TKFIPQTNIDVNDTVLEEFFEENRGNYRDGFDKLLTFDKAKDDVKYDYELKQARKTALEE 289 Query: 298 QLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 L ++G+S + ++ E P L D+ K GD GY+IA + Sbjct: 290 YLKIKKGESNATTAVTVLEDNEDFPINELRDA-----KVGDVLKPFEYKNGYMIAELVGK 344 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 +S++E K + K + ++E K+ + G + +SR K L Sbjct: 345 NMPEVMSYEEAKDALTKVYMDEKGKKLLEEKAKQSLNNFS-GKDIGFVSRDTKKSIDGLS 403 Query: 417 LVDF 420 ++ Sbjct: 404 ETEY 407 Score = 40.4 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 34/256 (13%), Positives = 82/256 (32%), Gaps = 41/256 (16%) Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 +F + K D+ + +A + E+Y ++++ + T+ + + I+ G Sbjct: 265 TFDKAKDDVKYDYELKQARKTALEEYLKIKKGESNATTAVTVLEDNEDFPINELRDAKVG 324 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 +K E YM ++ EE Sbjct: 325 DVLKPFEYK-----------------------------NGYMIAELVGKNMPEVMSYEEA 355 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 + K + K + + KA Q + + GK+ ++ + +D ++ Sbjct: 356 KDALTKVYMDEKGKKLLEEKAKQSLNNF--SGKDI---------GFVSRDTKKSIDGLSE 404 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM-NKD 601 I ++F P + + Y + + + V+E + +S + N Sbjct: 405 TEYLTFIMKLFESPNKNGYVMLDTKAVVYSILEQRLLNLDKVKEYNALLSQNASAIKNGQ 464 Query: 602 LLDSVIAYLKSQYSVT 617 L ++ L+ +Y + Sbjct: 465 LERDLLDALQKRYKIE 480 >gi|189184244|ref|YP_001938029.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str. Ikeda] gi|189181015|dbj|BAG40795.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str. Ikeda] Length = 517 Score = 197 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 85/459 (18%), Positives = 179/459 (38%), Gaps = 30/459 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59 ML +R AS + KI +++L + + W + S + SS +V+ + K + S F+ + Sbjct: 1 MLNKLRTASHSIAFKILILILILASVFWSIGTMFHSSNNSSDIVTFTKAKNITKSEFMQA 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 L + +I + + + +L NL+S L+Q + L V+ I Sbjct: 61 ----LKLAMHQIPQNSDQNLLTQNNIRELVLSNLISTHVLEQLAHEYNLTLSTAAVFKFI 116 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 S F+ N F ++F + L I+E +Y D K ++ F+ ++L Sbjct: 117 QNSKAFNNNQN-FDINIFRNILKNLHISEPQYFDQAAKQQLSEILLRQFINNNYVPSILT 175 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 E R++ + ++ ++ + PS+ L +++ + + PE + ISYI+ Sbjct: 176 KNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFEKPEQRHISYIV 235 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS--------PEIRT--VEQLVFPN-QKEADE 285 D + + K+ + N L+ Y + +++ E+R V V Sbjct: 236 LDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTKNIAEVREKYVNHQVDKLFNDTITL 295 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPV 341 + G ++A+ L ++L + +K+ + + ++ D+IF+L + P+ Sbjct: 296 LEDEVASGSNSSEIAKMLNVKL--LTLNNVTKQKLANNKILSNVTDAIFALEEHETSYPL 353 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 S +I + I P+ F V + + + E+ E + ++ T+ Sbjct: 354 DVSSKMLIIVSIQKIIPTAVEKFDNVLNQVQEEWKKNTIRERNIELLNKFQQT----TNA 409 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 D K + + + + EQLL Sbjct: 410 DNFIADAKKYKLTVKPNVIVTRLNNNTVELPKEFVEQLL 448 >gi|57242050|ref|ZP_00369990.1| conserved hypothetical secreted protein, putative [Campylobacter upsaliensis RM3195] gi|57017242|gb|EAL54023.1| conserved hypothetical secreted protein, putative [Campylobacter upsaliensis RM3195] Length = 501 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 95/522 (18%), Positives = 202/522 (38%), Gaps = 47/522 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ V+ F+ G+ ++ + +S+V VG +K+ F F Sbjct: 1 MLTWMQHHKKYLVVTIWISVIA--FVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q G +Q ++ E A +GL L++L+ L F +++GL A+ V Sbjct: 59 LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E++ + F + F +++ + L + I K Y + + + +F + + L Sbjct: 119 ELSATEEFQNINGIFDKNIYYAILKQNNILSKNYEQILSDRIILNKLNKIFEFPAKENEL 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A F + + I + + + L Q +E +K++++ + SY L Sbjct: 179 QMLAASYFMQDALEIAKITFDKKDLA----VDENALKQLWEAHKNDFKTQK----SYELS 230 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 + KK S DEL+A Y E NK KY + + + ++ + D + + K Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILDFELAKEMVIKDLSLEKTKNLAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF------- 346 +KF+ L ++ D ++ D + + + K D I Sbjct: 291 EKFVALRNQKDDFQKDFNISE------EDQNYPLELLAKTKNKDILKPIIWQKCENKICK 344 Query: 347 -GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G++I ++ P +F+E + ++ A + ++E ++ G ++ + Sbjct: 345 DGFIILRLNQTNPVRVKNFEEARAEVLPMYYSEVAQKALEEKAQKAL-PTFKGIELEFVD 403 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 R + + E+ L +VF D V + D + Sbjct: 404 RNSIKDAKKV-----------SDEILNNAEFSFFLSQVFNTD---QNSSYVLINDSKAIL 449 Query: 466 VQIKESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 +IK+ + + T ++ KT+K++E +L Sbjct: 450 YRIKKQKLNPNKQDFNQYQTMLESSLKTLKSSEIKQELLEEL 491 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 91/267 (34%), Gaps = 34/267 (12%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + + F+ K+ + + + K E + L IS ++ ++L Sbjct: 262 QDGKILDFELAKEMVIKDLSLEKTKNLANEKFVALRNQKDDFQKDFNISEEDQNYPLELL 321 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +K K + ++ +++ ++ P R Sbjct: 322 AKTKNKDILKPIIWQKCENK---------------------ICKDGFIILRLNQTNPVRV 360 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + EE +V + + + + KA + + + F D A ++ +N Sbjct: 361 KNFEEARAEVLPMYYSEVAQKALEEKAQKALPTFKGIELEFVDRNSIKDAKKVSDEILN- 419 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFI 591 + E FF +SQVF+ + + N +++++ K+ P ++ + Sbjct: 420 -NAEFSFF----LSQVFNTDQNS--SYVLINDSKAILYRIKKQKLNPNKQDFNQYQTMLE 472 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618 S L + + ++ ++ LK Y + + Sbjct: 473 SSLKTLKSSEIKQELLEELKKTYKIKI 499 >gi|237752705|ref|ZP_04583185.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376194|gb|EEO26285.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 485 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 71/420 (16%), Positives = 167/420 (39%), Gaps = 29/420 (6%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K + + I++ + F+ WG A + S+ VG +++ Sbjct: 1 MIGFMQKHKKYLIVTIWISAIAFLGAGFVGWG---AYSFSNTSNAAAVVGDRQITIDRLQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + +Q +++E+A+ +G++++ L+ L+S A + + D+GL + Sbjct: 58 REYARLYNVYNQLFNGNLDNEQAKKLGIEEQALNTLISRALMLNYAHDVGLRISQEEIIQ 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + +F + KF ++ LA + K++ + + + + + + P + Sbjct: 118 TLTAMDIFQN-NGKFDETIYKRLLADNQMRPKDFEEELGEGILLQKLDALLEIPLTPLEI 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 F ++ + + +P+ + +++E+ KD Y+ Y + Sbjct: 177 QTISEAVFSEDHLKIQVL----NDSEITFNPTEEEIKKYWEENKDIYQTQR----GYEVL 228 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 V K I + N+ L+ YE K ++ + + P K D+ K + Sbjct: 229 KVSVKSDSIPVDNETLKKHYEDFKNQFLDENGQ-----LLPFDKAKDKVIAHYKSSQAEK 283 Query: 298 QLAEE-----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + +E +G++ SL + + D + + S AK+ + I ++ Sbjct: 284 ESLKEYISLRKGENKKAESLVIYEGDSNYDTEFLN-LLSQAKEQETLKPIKVKGEFITIK 342 Query: 353 VSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + I PS S++ K+D I + + + K ++ L +F G + +SR KI Sbjct: 343 IQKIIPSEPKSYEAAKQDAIEDFITLRKTQLLEEKAALLLADF--KGVDVGYVSRENKIA 400 >gi|315638232|ref|ZP_07893414.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter upsaliensis JV21] gi|315481768|gb|EFU72390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter upsaliensis JV21] Length = 501 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 96/522 (18%), Positives = 202/522 (38%), Gaps = 47/522 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++ + V I++ V+ F+ G+ ++ + +S+V VG +K+ F F Sbjct: 1 MLTWMQHHKKYLVVTIWISVIA--FVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + Q G +Q ++ E A +GL L++L+ L F +++GL A+ V Sbjct: 59 LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E++ + F + F +++ + L + I K Y + + +F + + L Sbjct: 119 ELSAAEEFQNVNGIFDKNIYYAILKQNNILSKNYEQILGDRIILNKLNKIFEFPAKENEL 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + A F + + I + + + L Q +E +K++++ + SY L Sbjct: 179 QMLAASYFMQDALEIAKITFDKKDLA----VDENALKQLWEAHKNDFKTQK----SYELS 230 Query: 238 DVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG 293 + KK S DEL+A Y E NK KY + + + ++ + D + + K Sbjct: 231 SYFIEAKKSNFSQDELRAFYQNENNKFKYKAQDGKILDFELAKEMIIKDLSLEKTKNLAN 290 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF------- 346 +KF+ L ++ D ++ D + + + AK D I Sbjct: 291 EKFVALRNQKDDFQKDFNISE------EDQNYPLELLAKAKNKDILKPIIWQKCENKICK 344 Query: 347 -GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G++I ++ P +F+E + ++ A + ++E ++ G ++ + Sbjct: 345 DGFIILRLNQTNPVRVKNFEEARAEVLPMYYSEIAQKALEEKAQKAL-PTFKGIELEFVD 403 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 R + + E+ L +VF D V + D + Sbjct: 404 RNSIKDAKKV-----------SDEILNNAEFSFFLSQVFNTD---QNSSYVLINDSKAIL 449 Query: 466 VQIKESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 +IK+ + + T ++ KT+K++E +L Sbjct: 450 YRIKKQKLNPNKQDFNQYQTMLESSLKTLKSSEIKQELLEEL 491 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 95/267 (35%), Gaps = 34/267 (12%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + + F+ K+ I + + K E + L IS ++ ++L Sbjct: 262 QDGKILDFELAKEMIIKDLSLEKTKNLANEKFVALRNQKDDFQKDFNISEEDQNYPLEL- 320 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 A + +L + K DG ++ +++ ++ P R Sbjct: 321 --------------LAKAKNKDILKPI-----IWQKCENKICKDG-FIILRLNQTNPVRV 360 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + EE +V + + + + KA + + + F D A ++ +N Sbjct: 361 KNFEEARAEVLPMYYSEIAQKALEEKAQKALPTFKGIELEFVDRNSIKDAKKVSDEILN- 419 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFI 591 + E FF +SQVF+ + + N +++++ K+ P ++ + Sbjct: 420 -NAEFSFF----LSQVFNTDQNS--SYVLINDSKAILYRIKKQKLNPNKQDFNQYQTMLE 472 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618 S L + + ++ ++ LK Y + + Sbjct: 473 SSLKTLKSSEIKQELLEELKKTYKIKI 499 >gi|268680048|ref|YP_003304479.1| peptidyl-prolyl cis-trans isomerase D,- like protein [Sulfurospirillum deleyianum DSM 6946] gi|268618079|gb|ACZ12444.1| putative peptidyl-prolyl cis-trans isomerase D,- like protein [Sulfurospirillum deleyianum DSM 6946] Length = 486 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 80/447 (17%), Positives = 171/447 (38%), Gaps = 35/447 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + V I++ + F+ WG D + +++V VG + + F Sbjct: 1 MITWMQRHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNQDRAASVAKVGNRTISVQEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++ + + + E+A +GLDK ++ +L++ L + +++GL Sbjct: 59 SAYASHYNFYNNLLQGQLTQEQAEQMGLDKIVMSSLINQTLLLNYADELGLLVSKEETME 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + +P F ++ F+ +++ + L I +Y K + T + +F + Sbjct: 119 RLKNNPNFQ-ENGVFNKELYYTILKSNRIKPNDYEHELAKEILHTKLENIFKLPASDKEI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + F + +++ I LN V A + ++EK K NY + + + Sbjct: 178 EMFASAFFMEDRLAIETISLNANEVSA----DEEAIKAYWEKNKANYLTQKSYTLELLNL 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 K + L+A Y + K Y + + + +F KE LK KK Sbjct: 234 PPS----KTPFDDKTLEAFYAEEKHNYQHADGKLM---LFEEAKEKLAIDLRLKNDKKS- 285 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK-----KGDFTPVIHGSFGYVIAH 352 A E + + + + + D DS+F + K K + + + YV+ Sbjct: 286 --ALESFLAFKKGEINATETKVVYDT---DSLFPMDKIQIAAKDEVLKPVIINNQYVVIR 340 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-------TSMDEIS 405 V IK +S++ KK+ +N + T E +++ E S+ I+ Sbjct: 341 VKEIKFPEPMSYEMAKKEASNDLLKTLKEEALEKKAHAKVEQFKGNDIGFVSRDSVKSIA 400 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAA 432 + S + F KG ++ Sbjct: 401 GLNEAKSAEFLSHVFDNTAKKGYKIID 427 Score = 46.5 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 74/514 (14%), Positives = 164/514 (31%), Gaps = 79/514 (15%) Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 A +V F ++ + + L + + +++ + + ++ Sbjct: 41 AASVAKVGNRTISVQEFQSAYAS-HYNFYNNLLQGQ-LTQEQAEQMGLDKIVMSSLINQ- 97 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP- 227 D+ + +++ + N N L ++ K N P Sbjct: 98 ----TLLLNYADELGLLVSKEETMERLKNNPNFQENGVF--NKEL--YYTILKSNRIKPN 149 Query: 228 --EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEAD 284 E++ IL E K+ S+ E++ +F + +E + N+ AD Sbjct: 150 DYEHELAKEILHTKLENIFKLPASDKEIEMF----ASAFFMEDRLAIETISLNANEVSAD 205 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 E K ++ +L ++L SK D +L F +K Sbjct: 206 EEAIKAYWEKNKANYLTQKSYTLELLNLPP-SKTPFDDKTLE--AFYAEEK--------- 253 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 H + F+E K+ +A +R+ + LE FLA Sbjct: 254 -------HNYQHADGKLMLFEEAKEKLAIDLRLK------NDKKSALESFLAF------- 293 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 ++ ++ V + + + I K+++L V + + Y+ Sbjct: 294 --KKGEINATETKVVYDTDSLFPMDKIQIAAKDEVLKPV--------------IINNQYV 337 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 +++KE E + D E + KA+ V ++ K Sbjct: 338 VIRVKEIKFPEPMSYEMAKKEASNDLLKTLKEEALEKKAHAKVEQF-----------KGN 386 Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 ++ + + + N+ + +S VF + + + Y + + + Sbjct: 387 DIGFVSRDSVKSIAGLNEAKSAEFLSHVFDNTAKKGYKIIDDKAIVYEILEQKLLNSDKI 446 Query: 585 QEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ IS ++QM K+L ++I L + Y V Sbjct: 447 KQHVSLISDNVSQMKQKELNQNLIKKLAATYKVE 480 >gi|213026808|ref|ZP_03341255.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 257 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 119/264 (45%), Gaps = 13/264 (4%) Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + PE R+SYI D + +S+ ++QA Y+++ +++ PE + Sbjct: 1 YYDQNKVRFMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSII 58 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFS 331 + +A +L KG+ F LA+E+ + + +G + L ++ Sbjct: 59 QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV-PELKNA--G 115 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L +KG + VI S G+++A + +I+P+ EV+ DIA +++ KA + +++ Sbjct: 116 LKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKV 175 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF-RVFGKDDPL 450 + A + ++ E++ + + +D +E+ P + + + G++ Sbjct: 176 SD--AASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTP 233 Query: 451 SKDHTVALPDGSY-MWVQIKESIP 473 + + DG V++ E P Sbjct: 234 GPNSDIITVDGDRAFVVRVSEHKP 257 Score = 67.7 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 9/201 (4%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 ++R + K ++D K + + L G +++ S D+ G +E A Sbjct: 51 ERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKE---KSTDIISARNGGDMGWLEESAT 107 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P + + G+ + K ++ ++ + PA+ + L EV D+ K Sbjct: 108 VPELKNAGLKEKGQISGVIKSSV------GFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 161 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 K + + ++ S + ++ + G + T +R + + Sbjct: 162 EKALDAYYALQQKVSDAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAI 221 Query: 553 FSGPVEMVKCFPIENGLSYVV 573 F+G + P N V Sbjct: 222 FNGGLVGENGTPGPNSDIITV 242 >gi|261365094|ref|ZP_05977977.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC 25996] gi|288566520|gb|EFC88080.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC 25996] Length = 511 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 78/414 (18%), Positives = 159/414 (38%), Gaps = 45/414 (10%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A+I L ++ + F+ +G+ A SGS +V VG +K+ + N+ + E Sbjct: 12 AQILLGLIALTFIGFGVETA--RNSGSDYIVKVGSEKISDHTLNNAVQAEQA-------- 61 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 A + I LV A L + + +G++ +V I P FH + KFS Sbjct: 62 ------AGGGQSREAIFSGLVQRAYLKEGAKMMGIDVSMDQVKQAIVDDPAFHDANGKFS 115 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 +F L++ ++E ++ID + + +++ + G S+ +Q + NR++ Sbjct: 116 QALFTQYLSQRHMSEDQFIDDLREQFALQNLINLVQNGAIISDSQAEQLIKLTQSNRTIR 175 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 A +A L +++E +K +Y P+ ++ Y+ + +K IS DE+ Sbjct: 176 SFTFRPETFAAQVKTDDATLQRYYESHKKDYLIPQAVKLEYVALNAAHLAEKQSISADEV 235 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----------Q 303 + +++ +L F +K EA LKK A+E Sbjct: 236 KKAFDEEVAALPQN----APKLEFDKEKARIEAALKLKKASADFNAAKENLAEEAFNHPN 291 Query: 304 GKSLSDISLG--------SFSKEYIPDVSLADSIFSLAKKGDF------TPVIHGSFGYV 349 + LG ++ + D++ S A D + +I+ V Sbjct: 292 SLDEAAKKLGLKIETSDQWLTQADAKAAGMPDALISAAFSEDVLKKKHNSDIINIDNNTV 351 Query: 350 -IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + ++ T F E K + +++ + ++ + L G ++D Sbjct: 352 WVVRAKEVREEKTAGFTEAKDKVQTAYVRSESVKLAEKKAQETLADLKAGKNVD 405 >gi|157164574|ref|YP_001466661.1| glutamate-1-semialdehyde 2,1-aminomutase [Campylobacter concisus 13826] gi|112800465|gb|EAT97809.1| putative peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter concisus 13826] Length = 485 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 154/395 (38%), Gaps = 22/395 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ML ++K + V I++ + F+ WG D + + +++V VG + + Sbjct: 1 MLSWMQKHKKYLVVTIWVSTIAFVGAGFVGWGAYD--LNSNRATSVAKVGHRNISVQELQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + E+A +GL+ L + L F +DIGL + V Sbjct: 59 QKYDRLYQYYNNVFEGKLTQEKAEELGLENAALQAAIQENLLLNFADDIGLSVNKDDVLK 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I P F KD F +++ L R IN ++ D+ + + + ++ Sbjct: 119 YIIVDPTFQ-KDGVFDKNLYYDVLRRARINPTDFEDNLKLTILLDKLRTILNLPASKEDI 177 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + +A F + +V + + + L +E K+NY A + Y + Sbjct: 178 AMMEASFFMQDKLAVQIVSADQNEI----KVDEKELKDLWEINKNNYMA----KTLYGID 229 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + +K + + L++ Y +N++KY +I+ ++ K+ + +K Sbjct: 230 TYFVESEKSDANESVLKSYYNENQDKYKGSDDKIKPFNEVKAEVNKDYNIEQSKTNALEK 289 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 ++ + + + + IS+ + + D AK G+ GY+IA V + Sbjct: 290 YVAVKKAELATNGFISVNEDNATFSLDEIKG------AKVGEVIKPFIYKDGYLIARVKS 343 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 I P +SF++ + ++ + K E + K Sbjct: 344 ITPPQPMSFEQARANVLEIYKSKKEKEILTAKAKD 378 >gi|268316323|ref|YP_003290042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] gi|262333857|gb|ACY47654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] Length = 696 Score = 192 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 97/712 (13%), Positives = 221/712 (31%), Gaps = 123/712 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFI 57 + +R+ + + L +L + F +IW L D+ T+ V + + ++ Sbjct: 4 MNKLRENTG-----VILWILVISFGIIWVLQDSGAFDVVGRTGDTIAEVNGDPISYQEYV 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + ++ Q+ G + + + +++ + LV Q +E +G+ V Sbjct: 59 RAVEAQMQAYQQQTGEAPTPQMSD--LIREQVFNALVEERLRQQAMERLGITVTDDEVVQ 116 Query: 118 EIARS-------PLFHGKDNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMF 168 + F ++ + + + + E ++ +R + + Sbjct: 117 MVLGDNPHPIIKAYFGDENGNVNRALLQNFIDNPAAREDWIRLEEYLRAERARQKLEQLL 176 Query: 169 VGGMRPSNLLLDQ--------------------------------AKRFYFENRSV--DY 194 + + S+ +++ +R+Y E+R Sbjct: 177 LATVHVSDQEVEEEYRRRTLRADARYVALRYAEVPDDSVTVTESDLRRYYNEHRDDFKRK 236 Query: 195 IVLNNRHVPAIADPS-NAVLTQWFEKY--KDNYRAPEYKRISYILFDVHEKEKKIEISND 251 +V +P+ L E K+ + E + + D Sbjct: 237 RTYRVVYVALPKNPTAEDTLQVLEELNRLKERFAQTENDSLFLARYASERPFTDAFFRRD 296 Query: 252 ELQAEYEKNKEKYFSPEIR--------------------------TVEQLVF-------- 277 EL P ++ Sbjct: 297 ELDPALGDVVFDDPQPGKVVGPVVAGGLAHLVKIRAVRPSEETVIRARHILIRAPEGDAE 356 Query: 278 ---PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330 ++EA E + L++G F LA E LG F + + + ++ F Sbjct: 357 ARRQARQEALELKRQLEQGADFATLAREHSDDPGSARRGGDLGWFGRGRMVEP-FEEAAF 415 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 S A G I FGY + V+ D+A ++ + A+ + +R Sbjct: 416 S-APIGRVVGPIETRFGYHLIEVTGRSNVEVQ-----IADLAMRLAPSLAT--LNRIQER 467 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 +E+ + + + + + + + + + I +L + G D+ Sbjct: 468 MEDLAYYAEESGDFEGEAQRMGLQVQEMRV---EEDQQFLPGIGQSRAILNFLAGADEG- 523 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + L D ++ +Q+ E IP R EEV +++ K E ++ + + + Sbjct: 524 DVSQVIELDD-RFIVLQLVEVIPEGYRSFEEVREEIRPRVLLEKKKEVQVARMRRALQQ- 581 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENG 568 F + + LG ++ T Q++ G + I VF +E Sbjct: 582 ----HGFDGLAEALGTTVQTVTQLSYNQTLIPGLGREPRFIGTVFGLQEGTT-SGVVEGE 636 Query: 569 LSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + V ++T P Q +++ L + +L +A L+ Q + Sbjct: 637 NAAFVVQLTKLYEPPPLGEQMREQIRQQLLNQRRQQVLTQWLAALREQADIK 688 >gi|257458734|ref|ZP_05623857.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257443722|gb|EEV18842.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 485 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 71/394 (18%), Positives = 160/394 (40%), Gaps = 21/394 (5%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++K ++ + I++ + F+ WG D + +GS + VG+ + Sbjct: 1 MIEWMQKHKKSLIPTIWISTIAFVGAGFVGWGAYDMNANRAGS--IARVGQISITNQELN 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + +S E+A+++ LD+ +D L+ A F +D+G++A V Sbjct: 59 TKYSELYNRLSAMSDGQFTQEQAKNMHLDQIAVDQLIGEAYFLNFAKDLGIQASDKDVAE 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + SP F ++ FS +++ + + G+ +KE+ + K+L+ + + PS Sbjct: 119 FVVSSPNFQ-ENGAFSKELYDNVVRNSGLTKKEFERNLQKVLTLEKLGKALK--ITPSPK 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +++ V ++ A S+ L +++E K ++ + + Sbjct: 176 IVEAFAASQLMQDKVSAEIIYAD---ANVTFSDDELKKFWEGEKSHFMTEKKYTLGAYFV 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 K +++ EL Y++++ +Y S + + ++ D +KK Sbjct: 233 APS----KADVNETELSKFYKEHRGEYRSLDDKLLDFAEAKPDVLKDYRMDQVKKDATKD 288 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++GK L + + S +AK GD GY+IA ++ ++ Sbjct: 289 YLEIKKGK------LDTNETIVATASNFPISEIEVAKPGDVIKPFEYKGGYLIAKLNGVE 342 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +SF+E K + + K E +++ + Sbjct: 343 QPRQMSFEEAKSLASKEFETKKRKELLEKRAQDA 376 >gi|291276818|ref|YP_003516590.1| hypothetical protein HMU05900 [Helicobacter mustelae 12198] gi|290964012|emb|CBG39851.1| putative periplasmic protein [Helicobacter mustelae 12198] Length = 490 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 155/403 (38%), Gaps = 35/403 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF---LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 MLE +++ + V I++ V+ + F + W SD F+ + V VG+ K+ F Sbjct: 1 MLEWMQRHKKYLVVTIWVSVIALVFAGMVGWNPSDISFAG---NNVAKVGKIKISDQEFQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++++ +Q +G ++ ++A++ LD L L+ A L F D+GL + Sbjct: 58 YTFQRVFNEYNQMVGGDLDMDQAKNFQLDNITLQQLIQKAQLQNFALDLGLRVQDREIIE 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I ++ F D F ++ L +N K + L ++ F + L Sbjct: 118 VIEKNESFQR-DGTFDKKLYREVLKNNNLNVKFFEQSVRDSLLIQKLLEFFPAS--TTQL 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 +++Y VL+ P + L ++EK K NY P + Sbjct: 175 ERRSIGGSIALTDTIEYEVLSTS--PIKQQITEQKLKDFWEKNKANYTNPATVTLEIAKI 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFS-----PEIRTVEQLVFPN--QKEADEAFQSL 290 K E N LQ Y +NK Y + VE+ V + ++A E+ L Sbjct: 233 SPS----KQEFDNSSLQNFYNENKTLYLDSNGQLQDFSKVEKKVQADYQDQKAKESALRL 288 Query: 291 K---KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K + + L ++ D L + + + D + D+I + +GD Sbjct: 289 KPKFRKNELKDLKTQKLTIALDEKLSADTITQLKDARIGDTINPILYQGD---------- 338 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 YVI +V + T F K+ ++ E++K ++ Sbjct: 339 YVIGNVITKQEKNTKDFASAKEQARKDLQKQIMLEELKALAQK 381 >gi|296273463|ref|YP_003656094.1| hypothetical protein Arnit_1933 [Arcobacter nitrofigilis DSM 7299] gi|296097637|gb|ADG93587.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299] Length = 488 Score = 190 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 79/418 (18%), Positives = 152/418 (36%), Gaps = 33/418 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +++ + V I++ V+ + + S S +V VG +K+ + + Sbjct: 1 MLTWMQRHKKWLVITIWISVIAFVGAGFVGWGSYQYGSSSGSVAVVGDRKISVEEYQREY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 SQ G N E A+ +GL L ++ + + +D+GL + E+ Sbjct: 61 SSLYRQYSQVYGNKFNQEMAKRIGLPDAALSLVIQKNLILSYADDLGLLVTDKDIAKELV 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + P F KD KF +++V L++ G Y + L V + P + Sbjct: 121 QMPSF-IKDGKFDKELYVKVLSQNGTTPVVYEKSLKRDLLLQKVESLL--NFTPQANEVH 177 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + F V +L+ + + D ++ L +++ K Y + + + V Sbjct: 178 NLAKLLFSQDDVSIKLLDPKSI--KVDVTDEKLKEYWSTNKIKYLSTDSYDLEISKLPVK 235 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRT----------VEQLVFP-NQKEADEAFQS 289 I S +EL+ Y K K Y + + ++ + ++K+A + + Sbjct: 236 I----ITPSENELKEHYAKFKTDYKKEDGKLKTFDEAKDDMIKVISLKESKKDALRKYLT 291 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 LKKG+ A+ FS E I ++ +K G G+ Sbjct: 292 LKKGE-----AKFDKTETIYEDKLPFSAENINEIKT-------SKLGVVLKPFEDKDGFT 339 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 I V +S++ K + + SEK+K E G + +SR+ Sbjct: 340 IVKVLKKNDPKPLSYELSKDMVKADYIDIQRSEKMKALVAN-ELKNFTGEDLGFVSRK 396 >gi|224436614|ref|ZP_03657623.1| hypothetical protein HcinC1_01640 [Helicobacter cinaedi CCUG 18818] gi|313143113|ref|ZP_07805306.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128144|gb|EFR45761.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 492 Score = 190 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 72/404 (17%), Positives = 152/404 (37%), Gaps = 33/404 (8%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62 ++K + + I++ + F+ G+ + S + V VG + + F + + Sbjct: 1 MQKHKKWLIVTIWVSAIA--FIGAGMVNWGSYGFGSSNDKVARVGDIDIHLAEFQREYAR 58 Query: 63 ELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 L SQ + G +++ +A+ G+ + L L+ + D+GL V EI Sbjct: 59 ILNEFSQISQFGGMLDEAQAKQFGIPQMALQRLIQQVQILNLANDLGLVVSDKEVGEEIV 118 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS--NLL 178 + ++ +FS +V+ L +G++ E+ + K+L+ + + + Sbjct: 119 NAKVYVDDKGEFSQEVYRKALKEQGMSPSEFEEMVRKILTTQKLFSVMNITQVGPMLPIS 178 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + N D + + + + + + L ++EK +N+++P +I YIL Sbjct: 179 SSEMAALEMANAVRDRLRVEILPMDKVNIEIEDDELKAFWEKNAENWKSPMEFKIEYILV 238 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSP-----------EIRTVEQLVFPNQKEADEA 286 ++++L Y+ K Y E + + A Sbjct: 239 PFA----SQNPTDEDLTKHYQDFKSDYLDENGNLLSFEESKEKLIKDVQKIQAESVAKRE 294 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 ++ LK ++G+ LS F + D+ + D +A+ G I Sbjct: 295 YRDLKN-------KSKKGEILSLKENERFFVKNGVDLVIED--MKVAQVGQVLKPIEVDK 345 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+V + + KPS SF+E K + +K EK+ K Sbjct: 346 GFVTLRILDKKPSVQKSFEEAKAEAKVLFESSKKREKLLALAKE 389 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 98/258 (37%), Gaps = 43/258 (16%) Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT--SMDEISRREKIVSIDLPLVDF 420 SF+E K+ + ++ +A K +Y+ L+ G S+ E R +DL + D Sbjct: 270 SFEESKEKLIKDVQKIQAESVAKREYRDLKNKSKKGEILSLKENERFFVKNGVDLVIEDM 329 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 + Q+L + D ++ ++I + P+ + E Sbjct: 330 -----------KVAQVGQVLKPIEV--------------DKGFVTLRILDKKPSVQKSFE 364 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 E + K +++ K E++ + A + V + +G + + + ++LT + +M Sbjct: 365 EAKAEAKVLFESSKKREKLLALAKERVKNF--QGTDIGFVDRFYNGAILTLDDGQKMSFL 422 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + F + +E+ V++++ V ++ D M ++ Sbjct: 423 SHLFSS----------KQKEGYVMLEDKA--VLYRIVEQSVLNAKQGDAM--AFKSMKSE 468 Query: 601 DLLDSVIAYLKSQYSVTV 618 +LD++ YL Y T+ Sbjct: 469 AVLDALAEYLNETYKTTI 486 >gi|126641683|ref|YP_001084667.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter baumannii ATCC 17978] gi|126387567|gb|ABO12065.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter baumannii ATCC 17978] Length = 286 Score = 190 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 109/289 (37%), Gaps = 14/289 (4%) Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 +VS L Q E +G+ ++ +A+ P ++ +FS ++ + L G+ + I Sbjct: 1 MVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLI 59 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + + + F S + L Q E R++ + SN Sbjct: 60 ASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKTGLTASNQE 119 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 T ++ K+++ ++ P + Y++ K ++ EL+ Y K E R V Sbjct: 120 ATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIV 179 Query: 273 EQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV- 323 + ++ D A Q L K G F Q A + + + + G + Y P V Sbjct: 180 KHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVF 239 Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 + ++ SL K G + + +GY I + + + SF+ K Sbjct: 240 SDAFDKTVLSL-KNGQISQPVKTQYGYHIIE-AETQANQIPSFEAEKPR 286 >gi|218680686|ref|ZP_03528583.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 894] Length = 194 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 70/194 (36%), Positives = 117/194 (60%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+R+A++TWVAK+ +++L F IWG+S +L + S+TVV+VG Q V + F ++ Sbjct: 1 MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGGNSTTVVTVGDQHVDVNEFHLAY 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F + KF ++F+SRL I + +YI +K+ R+ VV G L+D Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180 Query: 181 QAKRFYFENRSVDY 194 K + E+RS+DY Sbjct: 181 ALKLYGDESRSIDY 194 >gi|222839633|gb|EEE77956.1| predicted protein [Populus trichocarpa] Length = 390 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 76/402 (18%), Positives = 147/402 (36%), Gaps = 42/402 (10%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK------ 295 E I +S D++++ Y +N E+ PE R ++ K+A A Q K K Sbjct: 1 IEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKADELLAE 60 Query: 296 -------FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 F +LA+ + G + S LG F + + D+ F + K GD + V+H Sbjct: 61 LRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKP-FEDAAFGM-KVGDISDVVHS 118 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDE 403 FGY I + +IK SF++++ + +++ +A K E + + S+ Sbjct: 119 DFGYHIISLEDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAELAEGFSNAVYEQSDSLQP 178 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461 ++ + K+ V G V + L +F D +K +T V L Sbjct: 179 VAEKFKLTVQKADHVTR----QPGPNVKGPLANPRFLEALFSSDSLNNKRNTDAVELGSN 234 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + ++ E PAR + EV ++ + K+AE + + + K D Sbjct: 235 QLVAGRVVEYTPARTLPMAEVGDKLRTLYVAQKSAELAKADGEAKLAAW----KAKPDAA 290 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNS 579 + A +++ +Q + + + P + + + Y V K+ Sbjct: 291 QLPAAKVISRDQ-------PEGLSREVVDAALRAPTAQLPAWTGVDMGAQGYAVVKINRI 343 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLD---SVIAYLKSQYSVTV 618 P + + + + + LK Q V + Sbjct: 344 VERPADDAQAAAAQKQDFLRSSAVAEAMAYYELLKKQLKVQI 385 >gi|224417810|ref|ZP_03655816.1| hypothetical protein HcanM9_00899 [Helicobacter canadensis MIT 98-5491] gi|253827151|ref|ZP_04870036.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313141352|ref|ZP_07803545.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510557|gb|EES89216.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313130383|gb|EFR48000.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 489 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 73/404 (18%), Positives = 163/404 (40%), Gaps = 20/404 (4%) Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K + + I+ + + F+ WG D S S+ V VG+ KV + Sbjct: 1 MISFMQKHKKYLMITIWVSTIAFVGAGFVGWGSYDF---SSTSNAVAVVGKTKVSINEMQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + G+ +Q +G ++ E+A+ +G++++ L+NL+ A + + D+GL A + Sbjct: 58 REYSRLYGIYNQLVGGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQ 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I + F + +F ++ L + K++ + + L + + + P L Sbjct: 118 AITSTESFQN-NGQFDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTP--L 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ Y V +++ + + +P+N + +++E+ KD Y+ IS + Sbjct: 175 EIETLSAAYSMEDLVHIQIIDKKTI--NVNPTNEEVKRYWEENKDIYQTERGYEISSVFI 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + IEI L++ YE K ++ E + + Q +K Sbjct: 233 PL----DSIEIQEASLESYYEDFKNQFLDSEGQVIPYEKAKEQVSEKYRDAQAQKEALKE 288 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF----GYVIAHV 353 +A + ++ +L + V + + S AK+ + I + GY+ A V Sbjct: 289 YIALRKNENPKAENLIIYEGNEDYGVEFIN-LLSQAKEQETLKPIKIAKDKKSGYITAKV 347 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 I PS +++ + + ++ +KE + E Sbjct: 348 IKIIPSEPKTYEAAQGNAKEDFVNSEKVRLLKEKATQALENFKG 391 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 90/261 (34%), Gaps = 36/261 (13%) Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + +++ K+ ++ + R +A ++ ++Y L + I + ++ Sbjct: 259 EGQVIPYEKAKEQVSEKYRDAQAQKEALKEYIALRKNENPKAENLIIYEGNEDYGVEFIN 318 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 + K+ + + I ++ Y+ ++ + IP+ + Sbjct: 319 LLSQAKEQETLKPIKIAKDKK----------------------SGYITAKVIKIIPSEPK 356 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E + K+D+ + + KA Q LE K D+G T + + Sbjct: 357 TYEAAQGNAKEDFVNSEKVRLLKEKATQ-ALENFKG----VDVGYVGYGETKTLKGLTKE 411 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQEKDKFISYLT 595 +++ + ++ S E + Y +F +V NS + Q D + T Sbjct: 412 ESQ------EFAQELMSKGEEKGYILLENKAILYKIFDQRVKNSAIIS-QNLDFLMQNGT 464 Query: 596 QMMNKDLLDSVIAYLKSQYSV 616 Q+ + + + YL Y + Sbjct: 465 QIKARIVEKEFLDYLSKTYKI 485 >gi|330975098|gb|EGH75164.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 239 Score = 187 bits (474), Expect = 6e-45, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 86/241 (35%), Gaps = 7/241 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +SQ++G + L + L L+ L Q D + Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ R + R + L + ++ + ++++ + +PE + YI Sbjct: 180 AQVEAFARLEKQTRDFASLTLPAD--TSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237 Query: 237 F 237 Sbjct: 238 L 238 >gi|255601607|ref|XP_002537715.1| rotamase, putative [Ricinus communis] gi|223515366|gb|EEF24668.1| rotamase, putative [Ricinus communis] Length = 396 Score = 187 bits (474), Expect = 7e-45, Method: Composition-based stats. Identities = 68/406 (16%), Positives = 150/406 (36%), Gaps = 41/406 (10%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQS 289 + + ++E + YE+N K+ E R ++ +K+ DE Sbjct: 1 MITSMRVGDEEAKKFYEENAAKFQGDEERRASHILVTFNGKKDAAAKAEAKKKIDEILAE 60 Query: 290 LKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +KK F +LA++ + + G F K + D++F ++ G + I Sbjct: 61 VKKSPDKFAELAKKYSQDPGSAANGGDLGFVKRGLMVKPFEDALFGMS-PGSISGPIETE 119 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 FGY I ++ +K SF +VK I ++ KA K E + ++ + Sbjct: 120 FGYHIIKLNEVK-GAAQSFDQVKGQIRAELMYQKALAKFSETADNFSNEVYEQSN--SLD 176 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSY 463 K + + D+ +D + A ++L +F + K +T V + + Sbjct: 177 GAAKDFGVQVQKSDWLSRD----DAAKFFKSDKLANEIFSDEVRKDKRNTEAVEVSPNTL 232 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + ++ ++ PA + EV ++ K + A+ + + + + K G Sbjct: 233 VAARVTDARPASLKTFNEVQAGIEDKLKHEQAAKLAIQRGEKTLADLKKGG-------SA 285 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFKVTNSKV 581 S T +I+R + + + + F + + G YV+ ++T + Sbjct: 286 GDISWTTPVKIDRQN--PQGLSDGVMKEAFRMDGSKLPAYVGAAGKDGGYVLIRLTAVED 343 Query: 582 G----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 G K + + + L + + L+ ++ V+ +L+ Sbjct: 344 GLQQLDTDTKKTAATEYEAALAAEYLTTFMKSLRIHANIKVNQDLL 389 >gi|188527796|ref|YP_001910483.1| conserved hypothetical secreted protein [Helicobacter pylori Shi470] gi|188144036|gb|ACD48453.1| conserved hypothetical secreted protein [Helicobacter pylori Shi470] Length = 517 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 167/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 87 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 88 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 148 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 205 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + + Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKVNEKAL 318 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 319 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLVS 377 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G SM +S + Sbjct: 378 QTKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSMGYVSPNFGGTINE 435 Query: 415 L 415 L Sbjct: 436 L 436 >gi|78777490|ref|YP_393805.1| hypothetical protein Suden_1292 [Sulfurimonas denitrificans DSM 1251] gi|78498030|gb|ABB44570.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 487 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 88/405 (21%), Positives = 161/405 (39%), Gaps = 37/405 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + + I++ + F+ WG + V VG ++ Sbjct: 1 MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSY---GDKAGAVAKVGSVEITMGELQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S+ SQ + E+A+S GL + L+ L A + + LE + Sbjct: 58 KSYSNIYAQYSQMFKGEFDEEKAKSFGLQSQALNFLTQQALVLNLAKSYNLEVSDEELLK 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI F KD F DV+ L++ I KEY K L + + + S Sbjct: 118 EITSKDYF-FKDGVFDKDVYKDVLSKNNIKTKEYEADIKKELLIRKTLSLLKIQTKESEQ 176 Query: 178 -LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++D A +DY VLN + I D SN L ++EK ++N+ + I YI Sbjct: 177 KIIDTAFSIAD---KIDYKVLNANQI--ILDTSNESLKSFWEKIQNNFMSEVSYDIKYIK 231 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV------EQLVF-----PNQKEADE 285 D +K E ++ L Y +NK E + + E++ + ++KEA + Sbjct: 232 HD----KKSNEYNDAALNEYYSENKISLKDGEGKIIPFEDAKEKIKYELDAKESKKEALK 287 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + S KKG+ I+ +E Q ++S + ++ + ++I L F+ I Sbjct: 288 KYVSYKKGE--IEPSEIQTATISASNNSFGTEAF-------EAISKLTSTSPFSKPIMVE 338 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 Y I + P+ S++E K ++ + K++E K+ Sbjct: 339 DNYFIFELVTTNPAKPKSYEEAKSEVLPIYESEQKKIKLEELAKK 383 Score = 41.1 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 28/261 (10%), Positives = 93/261 (35%), Gaps = 37/261 (14%) Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + F++ K+ I ++ ++ ++ + Y ++ +I ++ Sbjct: 259 EGKIIPFEDAKEKIKYELDAKESKKEALKKYVSY--------------KKGEIEPSEIQT 304 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 + + + + + + + D Y ++ + PA+ + Sbjct: 305 ATISASNNS--------FGTEAFEAISKLTSTSPFSKPIMVEDN-YFIFELVTTNPAKPK 355 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 EE ++V +++ + ++ A + ++ + ++ + + LT Sbjct: 356 SYEEAKSEVLPIYESEQKKIKLEELAKKSFATFNGKITDYITANDSSLLTDLTK------ 409 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 D ++F SQ + +E+G + V++ V K+ D + ++++ Sbjct: 410 DEADEFLSILFTSQ------DRRGYVNLESG-TVVMYNVLEQKLLSNTNTDP-NNSISRL 461 Query: 598 MNKDLLDSVIAYLKSQYSVTV 618 + + ++ L+S+Y + Sbjct: 462 KSTMFNEGLVKNLQSKYKTEI 482 >gi|315586916|gb|ADU41297.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A] Length = 517 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 164/421 (38%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S VG+ K+ Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 87 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 88 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 148 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 205 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 206 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 318 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 319 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 377 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 378 QTKDELQDFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 435 Query: 415 L 415 L Sbjct: 436 L 436 >gi|297380175|gb|ADI35062.1| Hypothetical protein HPV225_1003 [Helicobacter pylori v225d] Length = 517 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 87 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 88 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 148 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 205 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++L+ V + + +++E +K +++ P + + Sbjct: 206 -LEQSSLSLWAKLQDKLDILILSPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 263 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 318 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 319 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 377 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 378 QTKDELQNFNEAKSVLKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 435 Query: 415 L 415 L Sbjct: 436 L 436 >gi|307637665|gb|ADN80115.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908] gi|325996265|gb|ADZ51670.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018] gi|325997854|gb|ADZ50062.1| putative peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 2017] Length = 487 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 167/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E ++ +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYENHRKDFKKPTSFKTHSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++G + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKGNAKNYTTQDFEENNSPYTAEITQKLTAL-KPLEVLKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QVKDELQNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 43/263 (16%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K F+ V++ + + + + KA+EK Y L++ A + + + ++ Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNAKNYTTQDFEENNSPYTAEIT 319 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 Q L + PL DG + I + Sbjct: 320 ---------------------QKLTAL----KPLEVLKPEPFKDGFIVVQLISQVKDE-L 353 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + +E + +K KT + + A + + ++ +GK+ + N G ++ NQ Sbjct: 354 QNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTINELNQEES 411 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594 N F V G V++++T E+ +++ +L Sbjct: 412 AKFINTLFNRQ-------EKKGFVTI-----GNKVVLYQITEQNFNHPFSAEESQYMQHL 459 Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616 D D ++I LK +Y + Sbjct: 460 VNNTKTDFFDKALIEELKKRYKI 482 >gi|149194584|ref|ZP_01871680.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2] gi|149135328|gb|EDM23808.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2] Length = 482 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 152/400 (38%), Gaps = 28/400 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + F+ WG +ST+ V ++ + Sbjct: 1 MIEWMQTHRKWLVITIWIATIAFVGAGFVGWG---QFQFGKKTSTIAKVKDTEITIQDWQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 N++ ++Q++G ++ A+ +GL K+ LD + L Q+ +D+GL + Sbjct: 58 NAYNNLFDRVNQQLGGKLDEATAKKLGLQKEALDIAIQQGILRQYAKDLGLYVTDNDIAK 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +I +F K N + + L G K++ ++ K L ++ ++P Sbjct: 118 KILE--VFKNKQN------YENYLKNTGQKAKDFENNLRKQLLVEKLLKYL--NLKPQKT 167 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + ++D V+N ++ D + +++EK K+ Y + +I Sbjct: 168 EIMTIASALYNADNLDIKVINKNNI--KVDVDENEIKKYWEKNKNKYLSQNQYKIMIETI 225 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + ++S +EL+ Y +NK Y + + + NQ + D LKK Sbjct: 226 PLEG-----DVSEEELKKYYNENKLNYKNEKGEILSFEKAKNQVKIDYLAHKLKK----K 276 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + S + + + D + L G + + Y+ A + Sbjct: 277 AIIAYKNLKNSKGNYKIITVNENNKLIPFDKMQILKNNG-YLKPFVYNQQYITAKLIEEL 335 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + F++VK + +S+K+ E + + Sbjct: 336 KPTPLPFEKVKNIVIKDYINEMSSKKLIEIANKALQNFKG 375 >gi|108563383|ref|YP_627699.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1] gi|107837156|gb|ABF85025.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1] Length = 487 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYNFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++G + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKGNVQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|154148500|ref|YP_001406386.1| putative peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter hominis ATCC BAA-381] gi|153804509|gb|ABS51516.1| putative peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter hominis ATCC BAA-381] Length = 487 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 178/485 (36%), Gaps = 66/485 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K ++ + +++ + F+ WG D + S S++V VG + F Sbjct: 1 MINWMQKHKKSLIPTVWISTIAFVGAGFVGWGAYD--LNKSRSTSVAKVGDTAISIKEFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 N + + + E+A+ + LD+ ++ L+ A L F +D+G+ A V Sbjct: 59 NKYSEVYNYLKSISDGKFTDEQAKKMHLDEMAINALIQDAILLNFAKDLGINASDEEVAR 118 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI S F D KFS ++ + + G+++ EY K++ + ++P+ Sbjct: 119 EIINSDNFK-TDGKFSKKLYENAMKNAGLSQNEYEKELKKVIILDKLKKAI--SIKPNAD 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ F V+ +++ + ++ L ++EK K Y + + Sbjct: 176 DIEMLTASEFMQDKVEIAIVDQN--VSTITFNDDELKDFWEKNKSKYLTQKTYEMDAYFV 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEA 286 + K + L+ +EKN++ Y + + + N+ EA + Sbjct: 234 EPENK----NVDEKTLREFFEKNRDLYRNENDKLMSFEEANASVLNDYLTDFNKDEAIKK 289 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHG 344 + +KKGK F + E + + I +L K G+F + Sbjct: 290 YLDVKKGKIF-------------------TNEKLVLNDNDEIIKNLQNMKIGEFNKPVKY 330 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 G +I ++ I + F KK + + K +E +K+ + Sbjct: 331 KNGNLITKLTKINEPQIMEFDAAKKLAGSDLFKAKKAEDLKKLAEN-------------- 376 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 K+ D+ V A ++ + + + + +F D K L D + Sbjct: 377 -SLGKVAMKDIGFVSKASENTT-NGILSNEEFAKFIGSLFASD----KQDGYVLYDNKAL 430 Query: 465 WVQIK 469 +I Sbjct: 431 IYKIT 435 >gi|15611978|ref|NP_223629.1| hypothetical protein jhp0911 [Helicobacter pylori J99] gi|4155485|gb|AAD06486.1| putative [Helicobacter pylori J99] Length = 487 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 167/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L F D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTNVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E ++ +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYENHRKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D Q + Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++G + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKGNAQNYTTQDFEKNNSPYTAEITQKLTAL-KPLEVLKPEPFKDGFIVVQLVS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|317178673|dbj|BAJ56461.1| hypothetical protein HPF30_0364 [Helicobacter pylori F30] Length = 487 Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGTTKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEKYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|317182276|dbj|BAJ60060.1| hypothetical protein HPF57_0986 [Helicobacter pylori F57] Length = 487 Score = 183 bits (465), Expect = 8e-44, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN + + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDI--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|322380902|ref|ZP_08054980.1| peptidylprolyl isomerase [Helicobacter suis HS5] gi|321146670|gb|EFX41492.1| peptidylprolyl isomerase [Helicobacter suis HS5] Length = 481 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 63/393 (16%), Positives = 144/393 (36%), Gaps = 19/393 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+ ++K + V I++ + G FS++ + V VGR + Sbjct: 1 MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59 Query: 60 WKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ L + SQ I ++ + +++GL+ L L++ A L D+GL V Sbjct: 60 HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI +S F + F ++ L + + L + +F + P Sbjct: 120 EIQKSTAFQNE-GHFDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAITPL-- 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + F + R D + + P + L ++ ++K+ Y+ P ++ Sbjct: 177 ---EEEAFLWPLRLQDQVRIEVLE-PKEVVVTQQALRDYYNQHKNTYKKPPSYTLAASHI 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + E ++LQA YEKNK+ Y Q + + L++ + + Sbjct: 233 TDTDIE---PAKQEQLQAYYEKNKQVYTLQGKVQDFM-----QVKIKVSHDYLQEKARDL 284 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L + + + +P + + G+ G+++ + + + Sbjct: 285 ALQKYLALKNNTFKPATEVITKLPYPAEIATKIETMHPGEVLKPQKYKDGWLVVKLVSKQ 344 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 SF+E K+++ + + + +K++ + Sbjct: 345 TDQLQSFEEAKEEVRIAVVEQEQRKWLKQEASK 377 Score = 43.1 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 84/261 (32%), Gaps = 43/261 (16%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 F +VK +++ KA + + Y L+ + Sbjct: 260 GKVQDFMQVKIKVSHDYLQEKARDLALQKYLALKNNTFKPAT------------------ 301 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + + +PY ++ ++ + ++ V++ + + Sbjct: 302 ---------EVITKLPYPAEIATKIETMH--PGEVLKPQKYKDGWLVVKLVSKQTDQLQS 350 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 EE +V+ + + + +A++ + + K L+ + + Sbjct: 351 FEEAKEEVRIAVVEQEQRKWLKQEASKQLPHF-----------KGDDIGFLSLDFKGNIH 399 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQM 597 + + + + +F P + F I G V+++V + PV F ++ + Sbjct: 400 DLGEQSSKELVGYIFKHPY--KEGFVILKGPKAVLYRVYSQDFKHPVPNSKDFKQVVSNL 457 Query: 598 MNKDLLDSVIAYLKSQYSVTV 618 + ++A LK +Y V V Sbjct: 458 KAQSFDAMLVAMLKQRYQVHV 478 >gi|317177768|dbj|BAJ55557.1| hypothetical protein HPF16_0960 [Helicobacter pylori F16] Length = 487 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLATL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFDEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|109947212|ref|YP_664440.1| hypothetical protein Hac_0634 [Helicobacter acinonychis str. Sheeba] gi|109714433|emb|CAJ99441.1| conserved hypothetical secreted protein [Helicobacter acinonychis str. Sheeba] Length = 487 Score = 183 bits (464), Expect = 8e-44, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S++ VG+ + Sbjct: 1 MIEWMQNHRKYLVVTIWISAIAFIAAGMIGWG--QYSFSLD-SNSAAKVGKINISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + E+ R++ L+K L+ L++ A L D+GL A + Sbjct: 58 QEYRRLKDAYAESIPNFKELTEEQIRAMHLEKSALNILINQALLRNLALDLGLGATKQEI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQNNYRPKLFEESVERLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++L V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD + ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++G + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKGNTQNYTTQDFEENNSPYTTEITQKLTTL-KPLEILKPEPFKDGFIVVQLVS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F VK + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFDGVKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFAGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 89/263 (33%), Gaps = 43/263 (16%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K F+ V++ + + + + KA+EK Y L++ + + E Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNTQNYTTQDF--EENNSPYTTE 317 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 + + + P+K+ ++ VQ+ Sbjct: 318 ITQKLTTLKPLEILKPEPFKD------------------------GFIVVQLVSQTKDEL 353 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + + V + +K KT + + A + + ++ +GK+ ++ N Sbjct: 354 QNFDGVKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKS---------VGYVSPNFAGT 402 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594 ++ N+ I+ +F+ K + G V++++ E+ +++ L Sbjct: 403 INELNQEESAKFINTIFNRQE---KKGVVIIGDKVVLYQIIEQNFNHPFSTEESQYMDRL 459 Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616 D D +++ LK +Y + Sbjct: 460 VNNTKTDFFDKALMEELKKRYKI 482 >gi|217033935|ref|ZP_03439358.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10] gi|216943568|gb|EEC23016.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10] Length = 487 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 164/421 (38%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + +D ++LN V + + +++E +K +++ P + + Sbjct: 177 EQS--SLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSTLKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|317011211|gb|ADU84958.1| hypothetical protein HPSA_04905 [Helicobacter pylori SouthAfrica7] Length = 487 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 78/465 (16%), Positives = 178/465 (38%), Gaps = 30/465 (6%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S++ VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SNSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + E+ +++ L+K L+ L++ A L D+GL A + Sbjct: 58 QEYRRLKDAYAESIPDFKELTEEQIKAMHLEKSALNILINQALLRNLALDLGLGATKQEI 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQNHYRPKHFEESVEKLLIVQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++L V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILKPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD + ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDANLEKSDLK----ELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++G + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKGNTQNYTAQDFEENNSPYTTEITQKLTAL-KPLEILKPEPFKDGFIVVQLLS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLA---------LGTSMDEIS 405 F K + ++ K ++ ++L++F G S+ E+S Sbjct: 348 QIKDELQDFDGAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGSISELS 407 Query: 406 RREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 + E I+ + G G +V EQ F ++ Sbjct: 408 QEESAKFINALFNRQEKKGFVTIGDKVVLYQITEQNFNHQFSAEE 452 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 43/263 (16%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K F+ V++ + + + + KA+EK Y L++ + + E Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNTQNYTAQDF--EENNSPYTTE 317 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 + + + P+K+ ++ VQ+ I Sbjct: 318 ITQKLTALKPLEILKPEPFKD------------------------GFIVVQLLSQIKDEL 353 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + + + +K KT + + A + + ++ +GK+ + N G S+ +Q Sbjct: 354 QDFDGAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGSISELSQ--- 408 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYL 594 I+ +F+ + G V++++T E+ +++ L Sbjct: 409 ------EESAKFINALFNRQEKKGFVTI---GDKVVLYQITEQNFNHQFSAEESQYMERL 459 Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616 D D +++ LK +Y + Sbjct: 460 VNNTKTDFFDKALMEELKKRYKI 482 >gi|315452770|ref|YP_004073040.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC 49179] gi|315131822|emb|CBY82450.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC 49179] Length = 482 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 150/394 (38%), Gaps = 27/394 (6%) Query: 5 IRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++K + V I++ + + WG FS++ S V VGR + K Sbjct: 1 MQKHKKYLVVTIWISTIAFIAAGMIGWG--QYSFSMASGS-VAKVGRVLITSEELEMERK 57 Query: 62 QELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + SQ I ++ ++ ++GL+K L L++ A L D+GL + EI Sbjct: 58 RLVDAYSQSIPNFKDLDEKQIAAMGLEKTALRMLINQAYLKNLALDLGLGVSDAEIATEI 117 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +S LF KD F D++ L + ++ L V G+ PS Sbjct: 118 QKSALFQ-KDGHFDVDLYKKVLQDNHYRPALFEENVKNALILQKV-----SGLFPSATTP 171 Query: 180 DQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + F + + D I + A + L +++++K+ Y+ P Y L Sbjct: 172 LEKEAFTYPLKIQDRISIKILEASHAPIQLEESALKAYYDQHKNTYKKP----TRYTLQT 227 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + K K + L+ Y+ K Y + + + +K D + + Sbjct: 228 LWIKPKTATLDQSILRKYYQDRKSNYTDAQGK-----LETFEKAKDRVIHDYNQAQAKEN 282 Query: 299 LAEEQGKSLSDISLGSFSKEY--IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ +L +L + + +P + D+ + G+ + GY++ + Sbjct: 283 ALKQY-LALKRGNLNPKKESFTDLPYGTDIDTKIIAMQPGEVLKPLEYKEGYLVVKLVEK 341 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 SFQE K +I ++ + +K++ ++ Sbjct: 342 SSGLLKSFQEAKSEIMATLQAEAQQKWLKQEAQK 375 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 89/268 (33%), Gaps = 46/268 (17%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 +F++ K + + +A E + Y L +R + Sbjct: 258 GKLETFEKAKDRVIHDYNQAQAKENALKQYLAL--------------KRGNLNPKKESFT 303 Query: 419 DFA-GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 D G D+ K +A P ++L + K+ Y+ V++ E + Sbjct: 304 DLPYGTDIDTKIIAMQPG--EVLKPLEYKE--------------GYLVVKLVEKSSGLLK 347 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +E +++ + + + +A + V + DIG T ++ Sbjct: 348 SFQEAKSEIMATLQAEAQQKWLKQEAQKQVKNFQGN-----DIGVLSPEFYGTIQGLDVK 402 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 D + +F P + V++KV+ + +++ + Sbjct: 403 D------SRSLVDHIFKHPSKEGFVVF---KDKAVLYKVSQQDFQHKLGNESYLTEMATN 453 Query: 598 MNKDLLDS-VIAYLKSQYSVTVHDNLIQ 624 + D ++A LK++Y +T++ +Q Sbjct: 454 LKAQDFDRVLVAMLKNKYPITIYVKSLQ 481 >gi|322378577|ref|ZP_08053017.1| conserved hypothetical secreted protein [Helicobacter suis HS1] gi|321148985|gb|EFX43445.1| conserved hypothetical secreted protein [Helicobacter suis HS1] Length = 481 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 67/402 (16%), Positives = 141/402 (35%), Gaps = 37/402 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M+ ++K + V I++ + G FS++ + V VGR + Sbjct: 1 MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELDRE 59 Query: 60 WKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ L + SQ I ++ + +++GL+ L L++ A L D+GL V Sbjct: 60 HRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIA 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI +S F + F ++ L + + L + +F + P Sbjct: 120 EIQKSTAFQNE-GHFDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAITPL-- 176 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + F + R D + + P + L ++ ++K+ Y+ P ++ Sbjct: 177 ---EEEAFLWPLRLQDQVRIEVLE-PKEVVVTQQALRDYYNQHKNTYKKPPSYTLAASHI 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--------VEQLVFPNQKEADEAFQS 289 + E ++LQA YEKNK+ Y V F + + Sbjct: 233 TDTDIE---PAKQEQLQAYYEKNKQVYTLQGKVQDFMQVKIKVSHDYFQEKARDLALQKY 289 Query: 290 LK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 L K F E K + + + P G+ G+ Sbjct: 290 LALKNNTFKPATEVITKLPYPAEIATKIETMHP--------------GEVLKPQKYKDGW 335 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 ++ + + + SF+E K+++ + + + +K++ + Sbjct: 336 LVVKLVSKQTDQLQSFEEAKEEVRIAVVEQEQRKWLKQEASK 377 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 84/261 (32%), Gaps = 43/261 (16%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 F +VK +++ KA + + Y L+ + Sbjct: 260 GKVQDFMQVKIKVSHDYFQEKARDLALQKYLALKNNTFKPAT------------------ 301 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + + +PY ++ ++ + ++ V++ + + Sbjct: 302 ---------EVITKLPYPAEIATKIETMH--PGEVLKPQKYKDGWLVVKLVSKQTDQLQS 350 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 EE +V+ + + + +A++ + + K L+ + + Sbjct: 351 FEEAKEEVRIAVVEQEQRKWLKQEASKQLPHF-----------KGDDIGFLSLDFKGNIH 399 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQM 597 + + + + +F P + F I G V+++V + PV F ++ + Sbjct: 400 DLGEQSSKELVGYIFKHPY--KEGFVILKGPKAVLYRVYSQDFKHPVPNSKDFKQVVSNL 457 Query: 598 MNKDLLDSVIAYLKSQYSVTV 618 + ++A LK +Y V V Sbjct: 458 KAQSFDAMLVAMLKQRYQVHV 478 >gi|208434878|ref|YP_002266544.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27] gi|208432807|gb|ACI27678.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27] Length = 505 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 19 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 75 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 76 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 135 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 136 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 193 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 194 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 250 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 251 YFDAGLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 306 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + +L K + G+++ + + Sbjct: 307 RSYIALKKANVQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 365 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 366 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 423 Query: 415 L 415 L Sbjct: 424 L 424 >gi|308063803|gb|ADO05690.1| conserved hypothetical secreted protein [Helicobacter pylori Sat464] Length = 487 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLVS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQILAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|210135166|ref|YP_002301605.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12] gi|210133134|gb|ACJ08125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12] Length = 487 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + +L K + G+++ + + Sbjct: 289 RSYVALKKANVQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFDEAKSTLKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|308184755|ref|YP_003928888.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori SJM180] gi|308060675|gb|ADO02571.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori SJM180] Length = 487 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLVAL-KPLEVLKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|332673819|gb|AEE70636.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 83] Length = 487 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKNALKTRLTQEKTLIALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|308062290|gb|ADO04178.1| conserved hypothetical secreted protein [Helicobacter pylori Cuz20] Length = 487 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QAKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|317014385|gb|ADU81821.1| hypothetical protein HPGAM_05060 [Helicobacter pylori Gambia94/24] Length = 487 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 167/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L F D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLIIQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E ++ +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYENHRKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKTDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTAL-KPLEVLKPEPFKDGFIVVQLVS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|207091647|ref|ZP_03239434.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPKX_438_AG0C1] Length = 487 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYVALKKANAKNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|261839760|gb|ACX99525.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 52] Length = 487 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 165/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLIALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|118497644|ref|YP_898694.1| hypothetical protein FTN_1053 [Francisella tularensis subsp. novicida U112] gi|195536345|ref|ZP_03079352.1| numod1 domain family protein [Francisella tularensis subsp. novicida FTE] gi|118423550|gb|ABK89940.1| outer membrane protein of unknown function [Francisella novicida U112] gi|194372822|gb|EDX27533.1| numod1 domain family protein [Francisella tularensis subsp. novicida FTE] Length = 477 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 78/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P+F KD KFS + +A G + K + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAKNIQATIIPKTIVDTFIVTDYDT 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +L ++ GK+ + + + + + + + ++ V Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 GKD + F + ++ H +G ++ + P Sbjct: 396 ---DSQAFGKDFNDYVI-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436 Query: 474 ARDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456 >gi|254779571|ref|YP_003057677.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori B38] gi|254001483|emb|CAX29488.1| Putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori B38] Length = 487 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|330975097|gb|EGH75163.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 393 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 149/406 (36%), Gaps = 37/406 (9%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEAD 284 YI K+++ +++LQA Y+K E R ++ + + + Sbjct: 1 YIELKKSSFFDKVQVKDEDLQAAYQKEIANLS--EQRRAAHILIEVNDKLNDEQAKAKIE 58 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPV 341 E Q L KG+ F LA+E + + G ++ + + D + +++++L K + Sbjct: 59 EIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKD-QVSQP 117 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + FG+ + + ++ +F +K + N ++ +K E K+LE+ + + Sbjct: 118 VRTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDL 177 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALP 459 + ++ + G + + ++ F + + + +T+ L Sbjct: 178 SQPAQDLGLKVQTTAPFGREGGE-------GLTANRAVIQAAFSPEVLEEGANSNTLELD 230 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + V+ KE + + LE V + ++ + +K L+ ++GK Sbjct: 231 PETVVVVRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGL-RDGK-IPL 288 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVF 574 K G + R + + +F P K P + S+V+ Sbjct: 289 AAKQEGRDWKMMEAVTRS---QEGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIV 345 Query: 575 K---VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + V + EK ++ +L + + A L+S+ + Sbjct: 346 RLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 391 >gi|152992212|ref|YP_001357933.1| hypothetical protein SUN_0617 [Sulfurovum sp. NBC37-1] gi|151424073|dbj|BAF71576.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 491 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 63/404 (15%), Positives = 154/404 (38%), Gaps = 16/404 (3%) Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K ++ V I+ + + F+ WG S + V VG ++ + Sbjct: 1 MISWMQKHNKYLVWTIWVATIAFIGAGFVGWG---TYSFGSKAGNVAKVGNIEIKQTQLN 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ ++ + ++ ++A+ +GL ++ + A L F +++G+ V Sbjct: 58 MAYSNLYNQYNEMMQGKLDEKKAKEMGLIQQAFSRIEVQAKLLNFAQEMGIVVSDKEVAR 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +A F KD F+ D++ + L + + K + ++ + + P L Sbjct: 118 TLAGIKGFQ-KDGVFNKDIYNAYLRSQRLKAKTFEATLKDEITIQKTLALLHTDALP--L 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ + Y VL N V A + ++E K+N+ P ++S + Sbjct: 175 EVETVSSAMNIADKLMYKVLKNDDV--NISMDEAKIKAFWEIQKENFMTPRMYKLSIVW- 231 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 +E++++E++A Y++N Y + + + D + KK + Sbjct: 232 ---TATDGVEVTDEEIKAFYDENSFNYTDAAGKQLLFDEAKEEVTKDLKIKKSKKAAQKQ 288 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +A ++GK + S+ + L D++ G+ Y + + Sbjct: 289 YIAFKKGKLENPESMTLPVNDSTLSKELWDAVIE-KNSGEIVKPKVVGDKYATVKIEAVI 347 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 +F++ K+++ + E + + ++ E L +M Sbjct: 348 EPKAKTFEDAKEEVTKLYTLQAQKEALLKLAEKTLETLDKSNAM 391 Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 13/160 (8%) Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 Y V+I+ I + + E+ +V K + E + A + + K D Sbjct: 336 DKYATVKIEAVIEPKAKTFEDAKEEVTKLYTLQAQKEALLKLAEKTLETLDKSNAMISDF 395 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 +L + + ++++ + ++F+ ++ + + VV+K+ + K Sbjct: 396 -----VTLEKNDNLKSLNSQE---SLQFLQKLFT-SLKEKGIISVADK--VVVYKIMDQK 444 Query: 581 VGPVQE-KDKFISYLTQMMNKDLLDS-VIAYLKSQYSVTV 618 P + + F+ M ++ +I L ++Y V Sbjct: 445 FLPADQNRTDFVKQSVNQMKSRTFEANLIKMLDAKYPTEV 484 >gi|217032656|ref|ZP_03438143.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128] gi|298736064|ref|YP_003728589.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8] gi|216945666|gb|EEC24294.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128] gi|298355253|emb|CBI66125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8] Length = 487 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|317009631|gb|ADU80211.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori India7] Length = 487 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTRFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYVALKKTNAQNYTTQDFEENNSPYTAEITQKLATL-KSLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 93/263 (35%), Gaps = 43/263 (16%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K F+ V++ + + + + KA+EK Y L++ A + + + ++ Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKTNAQNYTTQDFEENNSPYTAEIT 319 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 K + + + P+K+ ++ VQ+ Sbjct: 320 QKLATLKSL--EILKPEPFKD------------------------GFIVVQLISQTKDEL 353 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + +E + +K KT + + A + + ++ +GK+ + N G ++ NQ Sbjct: 354 QNFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISELNQ--- 408 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYL 594 I+ +F+ + G V++++T E+ +++ L Sbjct: 409 ------EESAKFINTLFNRQEKKGFIAI---GDKVVLYQITEQNFNHSFSAEESQYVQRL 459 Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616 D D ++I LK +Y + Sbjct: 460 VNNTKTDFFDKALIEELKKRYKI 482 >gi|317180180|dbj|BAJ57966.1| hypothetical protein HPF32_0384 [Helicobacter pylori F32] Length = 487 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 71/420 (16%), Positives = 161/420 (38%), Gaps = 19/420 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLDSGS-AAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAIHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + K+L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 +F E K + ++ K ++ K + G S+ +S +L Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKE-KLKNFKGKSVGYVSPNFGGTINEL 406 >gi|134302065|ref|YP_001122034.1| hypothetical protein FTW_1101 [Francisella tularensis subsp. tularensis WY96-3418] gi|134049842|gb|ABO46913.1| hypothetical protein FTW_1101 [Francisella tularensis subsp. tularensis WY96-3418] Length = 476 Score = 180 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 76/500 (15%), Positives = 169/500 (33%), Gaps = 51/500 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + I ++ + F+I G++ ++ + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + A + + IL ++ + + + + I Sbjct: 61 QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P+F KD KFS + +A G + + + T + V ++ Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK---F 296 K +IS DE++A Y+ +KE + + + + A E F + + Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKY 282 Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +L ++ GK+ + + + + + + + ++ V Sbjct: 283 TKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQVD 336 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 NSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS-- 394 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 GKD + F + ++ H +G ++ + P Sbjct: 395 --DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIEPI 436 Query: 475 RDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 TDKT-TQVPSQVIDAYKQEE 455 >gi|317012785|gb|ADU83393.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) [Helicobacter pylori Lithuania75] Length = 487 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYNFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDRLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYVALKKANAQNYTTQDFEENNSPYTAEITQKLATL-KPLEILKPEPFKDGFIVVQLVS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|261838345|gb|ACX98111.1| pedidyl-prolyl cis-trans isomerase D [Helicobacter pylori 51] Length = 487 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIKKTSVFQ-KDGIFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNKEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLAAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKNALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|15645592|ref|NP_207768.1| hypothetical protein HP0977 [Helicobacter pylori 26695] gi|2314119|gb|AAD08023.1| conserved hypothetical secreted protein [Helicobacter pylori 26695] Length = 487 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPSDV--KISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPDLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE 405 Query: 415 L 415 L Sbjct: 406 L 406 >gi|213420304|ref|ZP_03353370.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 205 Score = 179 bits (455), Expect = 9e-43, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 88/207 (42%), Gaps = 3/207 (1%) Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 ++ L +V I +P F D KF ++ + + + + G+ +Y L+ Sbjct: 1 RELKLGISDEQVKQAIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQ 59 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 ++ G D+ + R V V++ + A ++ ++ ++++ K Sbjct: 60 LINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVR 119 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + PE R+SYI D + +S+ ++QA Y+++ +++ PE + + +A Sbjct: 120 FMTPEQFRVSYIKLDAATM--QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDA 177 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDI 310 +L KG+ F LA+E+ + Sbjct: 178 KAVLDALNKGEDFATLAKEKSTDIISA 204 >gi|224824985|ref|ZP_03698091.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602656|gb|EEG08833.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 277 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 20/270 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M E ++ +V K+ L + + F+ +G+ +V + VG K+ + Sbjct: 1 MFEFVQNNK--FVIKVILGAIALTFVGFGVGSYTTAVD-EPYLAKVGNVKIHKQDLDRAL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + + +L+NL+ L GL ++ IA Sbjct: 58 EGQ----------------PADAATRQAVLENLIRQQLLLADAHAAGLTVSDAQLRKAIA 101 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P ++ FS + + LA + + + + + + +G ++D Sbjct: 102 SIPALQ-ENGAFSAERYKQFLAGRYQSSVAFEELVKRDILLQGQLTSLLGSQIVPRTVVD 160 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E+R V +VL A A L +++ +R PE ++ Y++ Sbjct: 161 RMAGVLGESREVRALVLKPEAFAAEVKTDAAALKAFYDASLKRFRTPEAVKLDYVVLSQD 220 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 +++ E+++ Y ++K + S E R Sbjct: 221 ALAAAQAVTDQEVESYYNEHKADFGSEERR 250 >gi|308183127|ref|YP_003927254.1| conserved hypothetical secreted protein [Helicobacter pylori PeCan4] gi|308065312|gb|ADO07204.1| conserved hypothetical secreted protein [Helicobacter pylori PeCan4] Length = 487 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 166/421 (39%), Gaps = 21/421 (4%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + + WG FS+ S + VG+ K+ Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWG--QYSFSLD-SDSAAKVGQIKISQEELA 57 Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 +++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ +F KD F+ +++ + L + K + + ++L + +F P Sbjct: 118 AKEIRKTSVFQ-KDGVFNEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP- 175 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + +D ++LN V + + +++E +K +++ P + + Sbjct: 176 -LEQSSLSLWAKLQDKLDILILNPNDV--KISLNEEEMKKYYESHKKDFKKPISFKTRSL 232 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 FD ++ ++ EL+ Y KNK Y E + + Q + D + Q + Sbjct: 233 YFDASLEKPNLK----ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A ++ + + + + +L K + G+++ + + Sbjct: 289 RSYIALKKANVQNYTTQDFEENNSPYTAEITQKLTAL-KPLEILKPEPFKDGFIVVQLIS 347 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSID 414 +F E K + ++ K ++ ++L++F G S+ +S + Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE 405 Query: 415 L 415 L Sbjct: 406 L 406 Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 93/263 (35%), Gaps = 43/263 (16%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 K F+ V++ + + + + KA+EK Y L++ + + + ++ Sbjct: 260 KEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANVQNYTTQDFEENNSPYTAEIT 319 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 +++ A+ E L F ++ VQ+ Sbjct: 320 -----------QKLTALKPLEILKPEPF---------------KDGFIVVQLISQTKDEL 353 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + E + +K KT + + A + + ++ +GK+ + N G ++ Sbjct: 354 QNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTI-------- 403 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYL 594 + N+ I+ +F+ E I N V++++T E+ +++ L Sbjct: 404 -NELNQEESAKFINALFNRQ-EKKGFIAINNK--IVLYQITEQNFNHSFSAEESQYMQRL 459 Query: 595 TQMMNKDLLD-SVIAYLKSQYSV 616 D D ++I LK +Y + Sbjct: 460 VNNTKTDFFDKALIEELKKRYKI 482 >gi|328676007|gb|AEB28682.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida 3523] Length = 477 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 77/502 (15%), Positives = 169/502 (33%), Gaps = 54/502 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + I + IL ++ + + + + I Sbjct: 61 AQSATTDIQ-----------------KRAILSQMIDQYLILADAQRHNIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 +P+F KD KFS D +A G + T+ + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSADKLKQVVAYLGGM--DRLEQMLTQNIQATIIPKTIVDTSLVTDYD 161 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Y N+ +DY ++ + PS L +++ +K+ Y P K ISY + Sbjct: 162 TKSLASIYSVNKYIDYFKVSPADFKSQIKPSQQDLQSYYDVHKNEYITPAQKTISYFIIT 221 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK-- 295 K +I DE+++ YE +KE + + T + + A E F + Sbjct: 222 KDNFVPKNKIGEDEIKSYYEAHKELFKDFDDNTKSTIQKIIQNRHALEQFNEYTQNVDSI 281 Query: 296 -FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + +L ++ GK+ + + + + + ++ + ++ Sbjct: 282 KYAKLEKQLGKAKTATIVDNNDMTISNVANSQF------FTNSDKYSSITIADNQLLVYQ 335 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V N + ++K I+ K+ + + + L L G +D + K + Sbjct: 336 VDNSTKATQQKLADIKDTISKAYIEQKSQQLALQQAQNLLNDLTSGKKID---KSFKQAT 392 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 I++ F + +F + ++ H +G ++ + Sbjct: 393 INIDSQAFDKDFNN--------------YVMFNSN---NQYHDYKAANGDIYIYKVTKVE 435 Query: 473 PARDRKLEEVLTDVKKDWKTVK 494 P D+ V + V +K + Sbjct: 436 PITDKT-TRVPSQVIDAYKQEE 456 >gi|254374458|ref|ZP_04989940.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572178|gb|EDN37832.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 477 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 77/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P+F KD KFS + +A G + + + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +L ++ GK+ + + + + + + + ++ V Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 GKD + F + ++ H +G ++ + P Sbjct: 396 ---DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436 Query: 474 ARDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456 >gi|332678352|gb|AEE87481.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida Fx1] Length = 477 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 77/502 (15%), Positives = 172/502 (34%), Gaps = 54/502 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 +P+F KD KFS + +A G + + + + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLGGM--DKLEQILAQNIQATIIPKTIVDTSIVTDYD 161 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 162 TKLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIIT 221 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK-- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 222 KDNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSI 281 Query: 296 -FIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + +L ++ G K+ + + + + + + + + ++ Sbjct: 282 KYTKLEKQFGKVKTATIVDNNNTTISNVANSQF------FINSDKYATITIADNKLLVYQ 335 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 336 VDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS 395 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 GKD + F + ++ H +G ++ + Sbjct: 396 ----DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYVYKVTKIE 435 Query: 473 PARDRKLEEVLTDVKKDWKTVK 494 P D+ +V + V +K + Sbjct: 436 PITDKT-TQVPSQVIDAYKQEE 456 >gi|148284059|ref|YP_001248149.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str. Boryong] gi|146739498|emb|CAM79204.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str. Boryong] Length = 485 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 78/426 (18%), Positives = 162/426 (38%), Gaps = 30/426 (7%) Query: 34 LFSVSGSSTVVSVGRQK-VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92 S SS +V+ + K + S F+ + L + +I + + + +L N Sbjct: 2 FHSNDNSSDIVTFTKAKNITKSEFMQA----LKLAMHQIPQNSDQNILTQNNIRELVLSN 57 Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 L+S L+Q + L V+ I S F+ N F ++F + L I+E +Y Sbjct: 58 LISTHVLEQLAHEYNLTLSTAAVFKFIQNSKAFNNNQN-FDINIFRNILKNLHISEPQYF 116 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD---PS 209 D TK ++ F+ ++L E R++ + ++ ++ + PS Sbjct: 117 DQATKQQLSEILLHQFINNNYVPSILTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPS 176 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS--- 266 + L +++ + + PE + ISYI+ D + + K+ + N L+ Y + +++ Sbjct: 177 SEQLQEFYNNNQSKFEKPEQRHISYIVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNS 236 Query: 267 -----PEIRT--VEQLVFPN-QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318 E+R V V + G ++A+ L ++L + +K+ Sbjct: 237 FTKNIAEVREKYVNHQVDKLFNDTITLLEDEVASGSNSSEIAKMLNVKL--LTLNNVTKQ 294 Query: 319 YIPD----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + + ++ D+IF+L + P+ S +I + I PS F V + + Sbjct: 295 KLANNKILSNVTDAIFALEEHETSYPLDVSSKMLIIVSIQKIIPSAVEKFDNVLNQVQEE 354 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + E+ E + ++ T+ D K + + + Sbjct: 355 WKKNTIRERNIELLNKFQQT----TNADNFIADAKKYKLTVKPNVIVTRLNNNTIELPKE 410 Query: 435 YKEQLL 440 + EQLL Sbjct: 411 FVEQLL 416 >gi|115314710|ref|YP_763433.1| hypothetical protein FTH_0881 [Francisella tularensis subsp. holarctica OSU18] gi|156502314|ref|YP_001428379.1| hypothetical protein FTA_0947 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254369242|ref|ZP_04985254.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|290953593|ref|ZP_06558214.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis subsp. holarctica URFT1] gi|295313094|ref|ZP_06803784.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis subsp. holarctica URFT1] gi|115129609|gb|ABI82796.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|156252917|gb|ABU61423.1| hypothetical protein FTA_0947 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122192|gb|EDO66332.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 477 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 77/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 VQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P+F KD KFS + +A G + + + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRYALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +L ++ GK+ + + + + + + + ++ V Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 GKD + F + ++ H +G ++ + P Sbjct: 396 ---DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIEP 436 Query: 474 ARDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456 >gi|254373010|ref|ZP_04988499.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570737|gb|EDN36391.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 477 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 77/501 (15%), Positives = 170/501 (33%), Gaps = 52/501 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F+ Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFLQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P+F KD KFS + +A G + + + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +L ++ GK+ + + + + + + + ++ V Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 N + ++K I+ K+ + + + L L G +D + K I Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKID---KSFKQAII 393 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + GKD + F + ++ H +G ++ + P Sbjct: 394 NSDS-QAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436 Query: 474 ARDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456 >gi|312131757|ref|YP_003999097.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella byssophila DSM 17132] gi|311908303|gb|ADQ18744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella byssophila DSM 17132] Length = 709 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 101/723 (13%), Positives = 222/723 (30%), Gaps = 127/723 (17%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWG--LSDALFSV--SGSSTVVSVGRQKVPFSSFINS 59 IR+ S V I + ++ F++ G ++ + S+ V + + F F N Sbjct: 6 KIREKSGVAVVVIAIALIL--FIVGGDFVAGSKGGGLFGNSNAVGEINGTTIDFQQFANL 63 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + +G N + + +++ + L+ + ED+G+ + + Sbjct: 64 VEGQRMQYEASVGRSANEQE--QAQIREQVWEKLIFEHVYSEAFEDLGITVSDEELREMV 121 Query: 120 AR--------SPLFHGKDNKFS---HDVFVSRLAREGINEKE------YIDHYTKMLSRT 162 F ++ F H F++ A + ++ + + R Sbjct: 122 QGPKNIHPFVKQQFSDQNGNFDATTHANFIAAYANNSMPAEQRIMWDNFKRELRDVRKRE 181 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYK 221 + + S Y+ + V S+ + +F K+K Sbjct: 182 KYANLLNSSSYITKAEAKAEYYNTTNKASGKYLYVPFYSVADSTVKVSDGEIKSYFSKHK 241 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQA------------EYEKNKEKYFSPEI 269 D++ A + + + Y+ F + ++ ++L+ Y +P + Sbjct: 242 DDFNAYDSRSLVYVTFSLLPTKEDSVALMNDLRELAKGLAAAPDPVAYANENSDIKTPGV 301 Query: 270 R-----------------------------------------------TVEQLVF----- 277 R ++F Sbjct: 302 REAGDLSPELKSTLASTIEGGLVGPFKEGTAYSIHKFLGTEVDEHYTARASHILFRADST 361 Query: 278 -------PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLAD 327 +K+A E K G F LA + G LGSF + + D Sbjct: 362 MTQEQRDEAKKKALEILAQAKSGMDFAFLARQFGSDGTAQQGGDLGSFKNDGTMVKAFED 421 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 +IFS + G ++ FGY I V+ K + + K++ + S V + Sbjct: 422 AIFSFSGTGVLPNLVTTDFGYHIVKVTEPKSNLKYKLATITKELH---VGDEGSNLVFQK 478 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 L ++E ++++ + L + V + +L+ +GKD Sbjct: 479 ASELMNSAKSIKDLEEAAKKDN----SIVLFNAENVQPGATVVNTLRNARELVQWAYGKD 534 Query: 448 DPLSK--DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + K D L D Y+ +K + D K E+ + + K AE Sbjct: 535 AKVGKVADRVFVLEDN-YVVAALKSAADKNDPKAEDFKDLIAARIRNEKKAE-------- 585 Query: 506 LVLEYSKEGK-NFRDIGKNLGA----SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 L+ + +GK +F +I K GA ++ + + F + ++F Sbjct: 586 LITKKLGDGKGSFEEIAKKYGAGALIEEVSEITLQTGMLNSAGFDPVAVGKLFGLKPNTR 645 Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY--LKSQYSVTV 618 + +++ + + + + + Q L +I L++ + Sbjct: 646 SKVFTGDSGVFIMENTAKVVAPEIADYSAYKAQIQQRSFG--LGGMIGEEILRANAKIED 703 Query: 619 HDN 621 + Sbjct: 704 NRA 706 >gi|213024001|ref|ZP_03338448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 215 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 94/216 (43%), Gaps = 5/216 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I +P F D KF ++ + + + + G+ +Y L+ ++ G Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 D+ + R V V++ + A ++ + Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEV 214 >gi|300770131|ref|ZP_07080010.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33861] gi|300762607|gb|EFK59424.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33861] Length = 703 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 107/718 (14%), Positives = 238/718 (33%), Gaps = 121/718 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 + +R + + + + V FL+ + + A F S + V SV + + + F Sbjct: 4 MTFLRNRA-GLIVTVI-GIAIVAFLLGDVVRTGAPFWASSQNQVGSVNGESISYPDFNVQ 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q M Q++G + + ++ + +++ + V+ L Q +E IGL + + Sbjct: 62 VEQASAMFQQQMGGGSLTPQMKNYAV-QQVWNQFVTKEILKQEVEKIGLSVGKDELNALV 120 Query: 120 AR-SPLFH-------GKDNKFSHDV---FVSRLAREGINEKE-----YIDHYTKMLSRTD 163 +P + + +F F+SRL +G E + ++ T Sbjct: 121 NGPNPSYQIVQAFTNPQTGQFDKAQLNMFLSRLKSDGTPEMQQQWEMLLEGVRDERMGTK 180 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKD 222 + + ++L + + + Y++L+ + A ++A +++++ K+ Sbjct: 181 YTNLLNNSIYVTSLEANDDYIQRNKLANFKYVLLDYSSIKDADIKLTDADYKEYYDENKN 240 Query: 223 NYR---------------APEYKRISYILFDVHEKEKKIEIS---------NDELQAEYE 258 ++ P + + L V + + + S N + + Y Sbjct: 241 AFKNPEETRSIEYVLVDGRPNQRDTAATLAVVQKLKADLAASTNDSLFASVNSDTKYPYT 300 Query: 259 ------------------------------------KNKEKYFSPEIRTVEQLVF----- 277 K K+ FSP+ ++ Sbjct: 301 YLKKGQVSPALDSVLFNAPVGATVGPFLSNGVYEIAKIKDATFSPDSVKASHILLNPTAE 360 Query: 278 ----PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329 + +AD + KG+ F LA +++G + LG+F + + ++ Sbjct: 361 GGVDKAKAKADSIKNLIAKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMV-PEFDKAV 419 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F K GD +++ FG I + + V VK I ++ I+ E + Y Sbjct: 420 FE-GKTGDVL-IVNSQFGVHIVKIEKQIGNSKV----VKAAIVDK-TISSGKETIDAAYA 472 Query: 390 RLEEFLA--LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 + F + + ++ ++ + V + G EV +LL F Sbjct: 473 KANSFFSALDKDNFKAVATKQGLKDATAKRVTAMDNTLDGNEVP-----RELLRWAFEAK 527 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 D D +++ ++ + P LE + D++ + + A ++ KA + Sbjct: 528 KGDVTDKVYET-DHTFIVARLADIQPKGILPLEAIKADIETPVRNLVKARQLKEKAENAL 586 Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPI 565 K + +G+ LG S + I + + VF I Sbjct: 587 ----KGASSIDQVGQKLGKSPIQVENIVLANPVIPGVALENAVVGTVFGLQPN-KPSTAI 641 Query: 566 ENGLSYVVFKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + V +V N K E L + +S+ L+ + + + Sbjct: 642 KGNQGVYVVQVNGFVNPKNQVATEIKAQQKQLIASKAQRSWNSIFKALQDKAKIDDNR 699 >gi|227538586|ref|ZP_03968635.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227241505|gb|EEI91520.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 703 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 108/718 (15%), Positives = 238/718 (33%), Gaps = 121/718 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 + +R + + + + V FL+ + + A F S + V SV + + + F Sbjct: 4 MTFLRNRA-GLIVTVI-GIAIVAFLLGDVVRTGAPFWASTQNQVGSVNGESISYPDFNVQ 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q M Q++G + + ++ + +++ + V+ L Q +E IGL + + Sbjct: 62 VEQASAMFQQQMGGGSLTPQMKNYAV-QQVWNQFVTKEILKQEVEKIGLSVGKDELNALV 120 Query: 120 AR-SPLFH-------GKDNKFSHDV---FVSRLAREGINEKE-----YIDHYTKMLSRTD 163 +P + + +F F+SRL EG E + ++ T Sbjct: 121 NGPNPSYQIVQAFTNPQTGQFDKAQLNMFLSRLKSEGTPEMQQQWEMLLEGVRDERMGTK 180 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKD 222 + + ++L + + + Y++L+ + A ++A +++++ K+ Sbjct: 181 YTNLLNNSIYVTSLEANDDYIQRNKLANFKYVLLDYSSIKDADIKLTDADYKEYYDENKN 240 Query: 223 NYR---------------APEYKRISYILFDVHEKEKKIEIS---------NDELQAEYE 258 ++ P + + L V + + + S N + + Y Sbjct: 241 AFKNPEETRAIEYVLVDGRPNQRDTAATLAVVQKLKADLAASTNDSLFASVNSDTKYPYT 300 Query: 259 ------------------------------------KNKEKYFSPEIRTVEQLVF----- 277 K K+ FSP+ ++ Sbjct: 301 YLKKGQVSPALDSVLFNAPVGATVGPFLSNGVYEIAKIKDATFSPDSVKASHILLNPTAE 360 Query: 278 ----PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSI 329 + +AD + KG+ F LA +++G + LG+F + + ++ Sbjct: 361 GGVDKAKAKADSIKNLIAKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMV-PEFDKAV 419 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F K GD +++ FG I + + V VK I ++ I+ E + Y Sbjct: 420 FE-GKTGDVL-IVNSQFGVHIVKIEKQVGNSKV----VKAAIVDK-AISSGKETIDAAYA 472 Query: 390 RLEEFLA--LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 + F + + ++ ++ + V + G EV +LL F Sbjct: 473 KANSFFSALDKDNFKAVATKQGLKDATAKRVTAMDNTLDGNEVP-----RELLRWAFEAK 527 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 D D +++ ++ + P LE + D++ + + A ++ KA + Sbjct: 528 KGDVTDKVYET-DHTFIVARLADIQPKGILPLEAIKADIETPVRNLVKARQLKEKAENAL 586 Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPI 565 K + +G+ LG S + I + + VF I Sbjct: 587 ----KGASSIDQVGQKLGKSPIQVENIVLANPVIPGVALENAVVGTVFGLQPN-KPSTAI 641 Query: 566 ENGLSYVVFKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 + V +V N K E L + +S+ L+ + + + Sbjct: 642 KGNQGVYVVQVNGFVNPKNQVATEIKAQQKQLIASKAQRSWNSIFKALQDKAKIDDNR 699 >gi|208779446|ref|ZP_03246792.1| numod1 domain family protein [Francisella novicida FTG] gi|208745246|gb|EDZ91544.1| numod1 domain family protein [Francisella novicida FTG] Length = 477 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 76/501 (15%), Positives = 169/501 (33%), Gaps = 52/501 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + +F KD KFS + +A G + + + T + V ++ Sbjct: 104 FTNSMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTFIVTDYDT 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +L ++ GK+ + + + + + + + ++ V Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 DNSIKATQQKLVDIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 GKD + F + ++ H +G ++ + P Sbjct: 396 ---DSQAFGKDFNDYVI-------------FNSN---NQYHDYKTDNGDIYVYKVTKIEP 436 Query: 474 ARDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456 >gi|54113793|gb|AAV29530.1| NT02FT0767 [synthetic construct] Length = 476 Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats. Identities = 76/500 (15%), Positives = 167/500 (33%), Gaps = 51/500 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + I ++ + F+I G++ ++ + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + A + + IL ++ + + + + I Sbjct: 61 QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P+F KD KFS + +A G + + + T + V + Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTK 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK---F 296 K +IS DE++A Y+ +KE + + + + A E F + + Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKY 282 Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +L ++ GK+ + + + + + + + ++ V Sbjct: 283 TKLEKQFGKAKTATIVDNNDTTINNVANSQF------FINSDKYATITIADNKLLVYQVD 336 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 NSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS-- 394 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 GKD + F + ++ H G ++ + P Sbjct: 395 --DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDSGDIYIYKVTKIEPI 436 Query: 475 RDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 TDKT-TQVPSQVIDAYKQEE 455 >gi|56707753|ref|YP_169649.1| hypothetical protein FTT_0628 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670224|ref|YP_666781.1| hypothetical protein FTF0628 [Francisella tularensis subsp. tularensis FSC198] gi|224456823|ref|ZP_03665296.1| hypothetical protein FtultM_03409 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370257|ref|ZP_04986262.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874566|ref|ZP_05247276.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604245|emb|CAG45261.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320557|emb|CAL08644.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|151568500|gb|EDN34154.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840565|gb|EET19001.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282158924|gb|ADA78315.1| hypothetical protein NE061598_03585 [Francisella tularensis subsp. tularensis NE061598] Length = 476 Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats. Identities = 76/500 (15%), Positives = 167/500 (33%), Gaps = 51/500 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ + I ++ + F+I G++ ++ + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + A + + IL ++ + + + + I Sbjct: 61 QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 +P+F KD KFS + +A G + + + T + V + Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTK 162 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK---F 296 K +IS DE++A Y+ +KE + + + + A E F + + Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKY 282 Query: 297 IQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 +L ++ GK+ + + + + + + + ++ V Sbjct: 283 TKLEKQFGKAKTATIVDNNDTTINNVANSQF------FINSDKYATITIADNKLLVYQVD 336 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 NSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS-- 394 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 GKD + F + ++ H G ++ + P Sbjct: 395 --DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDSGDIYIYKVTKIEPI 436 Query: 475 RDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 TDKT-TQVPSQVIDAYKQEE 455 >gi|319790371|ref|YP_004152004.1| SurA domain protein [Thermovibrio ammonificans HB-1] gi|317114873|gb|ADU97363.1| SurA domain protein [Thermovibrio ammonificans HB-1] Length = 436 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 78/404 (19%), Positives = 139/404 (34%), Gaps = 71/404 (17%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 ML IRK R I L ++ F+ +WG FS S V +V Q + + Sbjct: 1 MLSKIRKNLR--AFSIPLWIVAASFVGTIFLVWGRGS--FSGPSGSQVATVNGQPITLAE 56 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F +K + +K+G N + + + + L LV A L + ++ GL+ V Sbjct: 57 FNREYKTVEDELRRKLGDNFN-KLVKPNDIKRIALQRLVQRALLIELAKEEGLKVSDWAV 115 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I P+F ++ KFS ++ + L +G+ + + + K L V+ + + Sbjct: 116 AKAIEEMPIFQ-ENGKFSVKLYKAFLRAQGLTPQAFEETVRKDLLVQKVLTVVNHAPSVT 174 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + + F R + Y V S + Q+++K+K+ + + + Sbjct: 175 QAELTELYKKSFGQRKIGYKVFTADQF--NPKVSEEEVEQFYKKHKEQFTKEAGEEV--Y 230 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L ++ A EA++ KKG+ Sbjct: 231 LLSFENTP----------------------------------QGKERAKEAYELAKKGE- 255 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +L K + P + L K+ G +I Sbjct: 256 LEKL-----------------KAFNPKPAPEKLAKELQKRPFI---FRSENGRLILAF-K 294 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 +K S TV ++VK I Q++ KA E + K L G Sbjct: 295 LKKSETVPLEKVKAQIEEQLKEEKALELALKAAKSFNGTLQSGN 338 Score = 40.7 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 25/150 (16%) Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 LE+V +++ K K E K K+F ++ + T Q Sbjct: 302 PLEKVKAQIEEQLKEEKALELA-----------LKAAKSFNGTLQSGNFTPQTFVQ---- 346 Query: 538 DNENKFFGYDGISQVF-SGPVEMVKCFPIENGLSYVVFK----VTNSKVGPVQEKDKFIS 592 K + ++F S P P+E G Y VF+ +T K+ + + Sbjct: 347 --TFKPLDVQQVDRLFVSTPAGRRVIMPLEKG--YGVFEPEGPLTAGKID-ENKLNAVKL 401 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + + L+ ++ L+ + SV V+ L Sbjct: 402 LVLNAKAQSDLNYLLTLLEQKASVKVNPQL 431 >gi|307721334|ref|YP_003892474.1| hypothetical protein Saut_1415 [Sulfurimonas autotrophica DSM 16294] gi|306979427|gb|ADN09462.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM 16294] Length = 488 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 79/484 (16%), Positives = 173/484 (35%), Gaps = 50/484 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + + I++ + F+ WG + + V VG ++ Sbjct: 1 MITWMQRHKKWLIITIWISTIAFVGAGFVGWGQYSY---GNKAGAVAKVGDVEISKGELQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ + +Q + E+A+ GLDK+ L LV A L L + Sbjct: 58 KTYSRLYAQYNQMFQGNFDEEKAKQFGLDKQALQQLVQQALLINLAHSYDLIITDKEMIA 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + F K+ +F + + L++ + KEY K L + + ++ S Sbjct: 118 ALKGQKAF-YKNGEFDKETYKLVLSQNRLTIKEYETELRKELLIQKTLKLL--PVKTSKN 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + + ++Y VL+ + + L +++E K+N+ + Y Sbjct: 175 EENILNTIFNIADKINYKVLSFDDI--KVSLKDKELKKFWESKKNNFMT----DVIYESN 228 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + S+ ++ Y++N+ + + + + + ++ L + Sbjct: 229 FIKVTPVSKKFSDTKIAEYYKENRTHFKDSDGK-----ILTLEAAKEKVLNELNAKEAKD 283 Query: 298 Q-----LAEEQGKSLSDISLGS--FSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + +A ++ K DI+L + SK P + D++ LA +T I+ Y Sbjct: 284 KALRTYIAFKKNKLPDDIALQNAKISKSNNPFNTQTLDTVSKLALTKPYTKPINIDGIYY 343 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRRE 408 I ++ I PS SF+E K ++ EK+ + + F+ + I+ + Sbjct: 344 IFELTKIVPSKPKSFEEAKSEVLPLYIAQIKKEKLMKLANNSVNTFIGKTSDFLTITSVD 403 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K+V + L ++F D K + L +G + I Sbjct: 404 KLVPLSKQE------------------AADFLQKLFVND---KKRSFIGLNNGKIVLYNI 442 Query: 469 KESI 472 E Sbjct: 443 LEQK 446 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 94/260 (36%), Gaps = 36/260 (13%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 ++ + K+ + N++ +A +K Y + D+I+ + +S Sbjct: 260 GKILTLEAAKEKVLNELNAKEAKDKALRTYIAFK----KNKLPDDIALQNAKISKSNNPF 315 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + D K PY + + DG Y ++ + +P++ + Sbjct: 316 NTQTLDTVSKLALTKPYTKPI------------------NIDGIYYIFELTKIVPSKPKS 357 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 EE ++V + E++ AN V + GK LT ++++ Sbjct: 358 FEEAKSEVLPLYIAQIKKEKLMKLANNSVNTFI--GKTSD---------FLTITSVDKLV 406 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 +K D + ++F + + F N V++ + K+ + + + + ++ Sbjct: 407 PLSKQEAADFLQKLFVN--DKKRSFIGLNNGKIVLYNILEQKLL-INKNNNVSDTIAKLK 463 Query: 599 NKDLLDSVIAYLKSQYSVTV 618 + + +I L+++Y + Sbjct: 464 STMFNEGLIKTLQNKYQTEI 483 >gi|187931475|ref|YP_001891459.1| hypothetical protein FTM_0703 [Francisella tularensis subsp. mediasiatica FSC147] gi|187712384|gb|ACD30681.1| conserved hypothetical protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 477 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 77/501 (15%), Positives = 169/501 (33%), Gaps = 52/501 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +P+F KD KFS + +A G + + + T + V + Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDT 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK--- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 223 DNFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIK 282 Query: 296 FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +L ++ GK+ + + + + + + + ++ V Sbjct: 283 YTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQV 336 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 337 DNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS- 395 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 GKD + F + ++ H +G ++ + P Sbjct: 396 ---DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIEP 436 Query: 474 ARDRKLEEVLTDVKKDWKTVK 494 D+ +V + V +K + Sbjct: 437 ITDKT-TQVPSQVIDAYKQEE 456 >gi|242308919|ref|ZP_04808074.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524583|gb|EEQ64449.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 489 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 67/402 (16%), Positives = 153/402 (38%), Gaps = 30/402 (7%) Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ ++K + + I++ + F+ WG + S S+ V VG KV Sbjct: 1 MIGFMQKHKKYLMVIIWISTIAFIGAGFVGWG---SYSFSSTSNAVAVVGDIKVSIDKMQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + +Q +G ++ E+A+ +G++++ ++NL+ A + + D+GL + Sbjct: 58 REYARLYNIYNQLVGGTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQ 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI F K KF ++ L + K++ + + + + + L Sbjct: 118 EITSIEGFQNK-GKFDEQIYKQTLKDNQLKPKDFEEGIEE--GLLLQKLDALLNIPLTPL 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ Y V V+N + + + P + +++E KD Y+ IS I Sbjct: 175 EIEALGAAYSMEDLVHIEVINKKDI--VFTPKEEEIKKYWENNKDIYQTQRGYEISSIFI 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + I + + L+ Y+ K ++ + + P + D+ + + + Sbjct: 233 PL----DSIAVEENALEQYYKDFKNQFLDSNGQ-----IIPFAQAKDKVIEKFRDSQAQK 283 Query: 298 QLAEE-----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI----HGSFGY 348 + +E +G++ + + + S AK+ + I G GY Sbjct: 284 EALKEYISLRKGENQEAKDSTIYEGSDEYGADFIN-LLSQAKEQETLKPIRVNNKGKEGY 342 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + A V I PS +++ K + + ++E + Sbjct: 343 ITAKVVKIIPSQPQTYEVAKANAKEDYVNAEQIRLLEEKATK 384 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 46/265 (17%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL---EEFLALGTSMDEISRREKIVSIDL 415 + F + K + + R ++A ++ ++Y L E A +++ E S I+L Sbjct: 260 GQIIPFAQAKDKVIEKFRDSQAQKEALKEYISLRKGENQEAKDSTIYEGSDEYGADFINL 319 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + +K V Y+ ++ + IP++ Sbjct: 320 LSQAKEQETLKPIRVNNK-------------------------GKEGYITAKVVKIIPSQ 354 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 + E + K+D+ + + KA + + + +G N IG L + Sbjct: 355 PQTYEVAKANAKEDYVNAEQIRLLEEKATKQLGTF--KGVNVGYIGYGSEVEL---AGLT 409 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 + + + ++ + E +EN +++++ + +V + + +LT Sbjct: 410 KEEASDFI-------RILTTKKEEKGYILLENKA--ILYQIFDQRVKNSAIIKENLDFLT 460 Query: 596 QM----MNKDLLDSVIAYLKSQYSV 616 Q ++ + + YL Y + Sbjct: 461 QNGTQIKSRLVEIEFLNYLSKTYKI 485 >gi|189219654|ref|YP_001940295.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum V4] gi|189186512|gb|ACD83697.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum V4] Length = 507 Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats. Identities = 78/521 (14%), Positives = 182/521 (34%), Gaps = 60/521 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+I+R +W+ I L + + FL++ + S + +V + + + +F + Sbjct: 1 MLKILRTH--SWLLIIVLAAIGISFLLF-FNIPALSGLKNPSVAKIAGKNISLETFRLAR 57 Query: 61 K-----QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL-DQFIEDIGLEADHGR 114 + L Q G + + ILD + + Q ++ Sbjct: 58 QASSIEMALSGSRQSYGENL-----------QLILDQMAWTRLIFLQAAKEFHCIVPEEE 106 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAR----EGINEKEYIDHYTKMLSRTDVVGMFVG 170 V I + P + K+ ++ ++ +GI+E+ ++ + L V V Sbjct: 107 VVRFIQQLPFLQKE-GKYDASLYKRFVSSFLTPQGISEERFLQVMHEELVIGKVKKALVA 165 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPE 228 + +D+ F V + +N + + ++ + + Y PE Sbjct: 166 PIEVIPKEVDEIYAMTFGQVRVVLLRMNLEDFKKNIQIQPEEIEKEYKSHPKDPDYYTPE 225 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++ ++ F + + ++ E +++ + A EA + Sbjct: 226 KRKAGFVFFPFPAELQNLKGKELEEAK-----------------RKILEQAEDFAIEASR 268 Query: 289 SLKK-GKKFIQLAEEQGKSLSDISLGSFSKE---YIPDVSLADSIFSLAKKGDFTPVIHG 344 ++ F QLA+E+ S K + + ++F L+ + + Sbjct: 269 QVENSAANFEQLAKEKNLSYQLTEPFPADKPPSAIVEPEKFSKTVFGLSLDKAVSEPVET 328 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE----FLALGTS 400 S GY + + N++ F E+K + +++ KA E + + ++E+ L G Sbjct: 329 SKGYYVVVLLNVEKGSLRPFDEIKSTVEEKLKRKKAFEALFQKSAQIEKDLNRALKEGKD 388 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 ++++++ E + P + I + QLL +P+ H + + Sbjct: 389 IEQLAKAEGLSVEKPPAFVPIDPPKDLEAGNEIGFLCQLL-------EPMRLSHFLPTMN 441 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 G S P +L E+ ++KD + + Sbjct: 442 GGVFIYLENRSAPEMPNEL-EIKDRLEKDLLMSRRQAFLEE 481 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 90/254 (35%), Gaps = 24/254 (9%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 +E K+ I + +A + E +++E + +++++ + + Sbjct: 246 KELEEAKRKI-----LEQAEDFAIEASRQVEN---SAANFEQLAKEKNLSYQLTEPF--- 294 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 K +AI E+ VFG + V G Y+ V + R +E Sbjct: 295 ---PADKPPSAIVEPEKFSKTVFGLSLDKAVSEPVETSKGYYVVV-LLNVEKGSLRPFDE 350 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEY---SKEGKNFRDIGKNLGASLLTTNQINRMD 538 + + V++ K K E + K+ Q+ + KEGK+ + K G S+ +D Sbjct: 351 IKSTVEEKLKRKKAFEALFQKSAQIEKDLNRALKEGKDIEQLAKAEGLSVEKPPAFVPID 410 Query: 539 NENKFFGYDGIS---QVFSGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQEKDKFISY 593 + I Q+ P+ + P NG ++ + ++ KD+ Sbjct: 411 PPKDLEAGNEIGFLCQLLE-PMRLSHFLPTMNGGVFIYLENRSAPEMPNELEIKDRLEKD 469 Query: 594 LTQMMNKDLLDSVI 607 L + L+ + Sbjct: 470 LLMSRRQAFLEEWV 483 >gi|163781832|ref|ZP_02176832.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1] gi|159883052|gb|EDP76556.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1] Length = 437 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 95/516 (18%), Positives = 183/516 (35%), Gaps = 95/516 (18%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M +I+K R +A I + V + FL W +SD +V + F + Sbjct: 1 MYGLIQKHKR--LAAIIIAVASLSFLFWMFSVSDIKQMFGLQRCAAAVNDYCISLREFNH 58 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ ++ + E R++ + +++L +L++ L Q D+G+ A V Sbjct: 59 ELRKYQSLLEK--------EELRTL-VKRQVLFSLINRELLYQKALDVGVVASDREVAEL 109 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + P F + KFS ++ L R G+ EY + K L+ ++ G S Sbjct: 110 IKKDPQFQ-EGGKFSFKLYAETLERAGLTPVEYEGYLKKSLTIRKLLRFIKSGTYLSPKE 168 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 L+ +R S +LN V P+ L +++ + + + P Sbjct: 169 LEFQERILSARFSGRAYLLNASSVKLDYKPTLEELKEFYSRNAEKFSLP----------- 217 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 ++ ++ +A ++ LK+GK Sbjct: 218 -----------------------------SVKRFRVWETADKGKAQSIYRELKRGK---- 244 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 E G + L S K+ + ++ + + F+L K Y + ++ P Sbjct: 245 -VPEGGSLFKEEELPSALKDTVRNLKVTEP-FTLTKV---------KGKYYVIYLEESSP 293 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 SF+E +KDI + K +E V++ + L E L+ G +D R +++ + Sbjct: 294 GRVKSFEEARKDIEKLLVEEKKAELVEKKARELRELLSKGARVDHKHVRFDNSTVEEFIT 353 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 F + +++L VF +D T G Y V I++ R Sbjct: 354 LFKIQG------------DEVLRLVFSEDRVFGPYRTA----GGYAVVYIEK------RS 391 Query: 479 LE----EVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + + ++ K VS A +L E Sbjct: 392 FDSKNIKNRGQLEDSLLNAKLDSLVSLFAEKLAEEA 427 Score = 54.2 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 7/174 (4%) Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 +++ T+ G Y + ++ES P R + EE D++K K AE V KA +L Sbjct: 270 VTEPFTLTKVKGKYYVIYLEESSPGRVKSFEEARKDIEKLLVEEKKAELVEKKARELREL 329 Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569 SK + + +++ + ++ G + + VFS + + G Sbjct: 330 LSKGARVDHKHVRFDNSTVEEFITLFKIQ------GDEVLRLVFSEDR-VFGPYRTAGGY 382 Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + V + + ++ + + L L+ L + + +++ + Sbjct: 383 AVVYIEKRSFDSKNIKNRGQLEDSLLNAKLDSLVSLFAEKLAEEADIQINEEYL 436 >gi|89256253|ref|YP_513615.1| hypothetical protein FTL_0896 [Francisella tularensis subsp. holarctica LVS] gi|254367592|ref|ZP_04983613.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp. holarctica 257] gi|89144084|emb|CAJ79335.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|134253403|gb|EBA52497.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp. holarctica 257] Length = 476 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 77/502 (15%), Positives = 171/502 (34%), Gaps = 55/502 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S + V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + IL ++ + + + + I Sbjct: 61 VQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 +P+F KD KFS + +A G + + + + T + V ++ Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLGGM--DKLEQILAQNIQATIIPKTIVDTSIVTDYD 161 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY + Sbjct: 162 TKLLNSIYSVNKYIDYLKVSPTDFKSQIKPS-QHLQSYYDSHKNEYITPAQKTISYFIIT 220 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-FPNQKEADEAFQSLKKGKK-- 295 K +IS DE++A Y+ +KE + + + + A E F + Sbjct: 221 KDNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRYALEQFNEYTQNIDSI 280 Query: 296 -FIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + +L ++ GK+ + + + + + + + ++ Sbjct: 281 KYTKLEKQFGKAKTATIVDNNDTTISNVANSQF------FINSDKYATITIADNKLLVYQ 334 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V N + ++K I+ K+ + + + L L G +D+ ++ I S Sbjct: 335 VDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSFKQATINS 394 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 GKD + F + ++ H +G ++ + Sbjct: 395 ----DSQAFGKDFNDYVM-------------FNSN---NQYHDYKTDNGDIYIYKVTKIE 434 Query: 473 PARDRKLEEVLTDVKKDWKTVK 494 P D+ +V + V +K + Sbjct: 435 PITDKT-TQVPSQVIDAYKQEE 455 >gi|160871799|ref|ZP_02061931.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella grylli] gi|159120598|gb|EDP45936.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella grylli] Length = 484 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 68/489 (13%), Positives = 159/489 (32%), Gaps = 51/489 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58 ML+ IR S+ W+ + +L + F +WG+ + + V + Q + S F Sbjct: 1 MLQSIRDKSQGWITNTVIGLLIIIFALWGIHGYVVFHESGNNKIVAKIAGQLLRQSDFEK 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++ + + ++ + L ++++ L + Sbjct: 61 IYQRAYQQNRDYLNQSFSHDKKKVEALKEQVVREWEITQVLVYAALQSKYRISQTLIDSF 120 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + + P F +FS + F S L + E+++ KML V Sbjct: 121 LLQVPAFQSA-GQFSIEKFYSVLRANDYTKLEFLEEIKKMLLINQVQQGITQSAFVLPQD 179 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + + R Y+++ + ++ + ++++ K +R PE I Y+ Sbjct: 180 IRNYIEYNHQKRDFSYLIVPYSMFLNQQNIPDSRIFAYYQENKQLFRQPEQVSIEYVQLS 239 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + ++ +E + Y P+ + A+ ++ F + Sbjct: 240 LKNEKNFLESRDKLAHLTY-------VHPDSLAI---------AANTLGLKIRSTPFFGK 283 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK-KGDFTPVIHGSFGYVIA-HVSNI 356 +QG S + + + FS +G+ + VI + + + Sbjct: 284 TGGQQGLSKN--------------PKIITAAFSRDVLQGNNSAVIDLNTNTAVVLRIKKY 329 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 F EVK+ I + A K ++ G ++ + ++ S++ Sbjct: 330 NSEHRQLFNEVKEKIKKILNKQYAITKAQQ----------FGENLLRDPHKIEMSSMEKI 379 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT------VALPDGSYMWVQIKE 470 +K + ++LL VF P L +G Y +++ Sbjct: 380 SQKLKWHFMKQIDRQDKKLNKELLDAVFRLLPPGKNVPDSFWMKGFRLKNGDYALIKLIT 439 Query: 471 SIPARDRKL 479 ++ L Sbjct: 440 VYNQQNLPL 448 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-PLSKDHTVALPD 460 D ++ + + + F GK + ++ P +++ F +D + + L Sbjct: 262 DSLAIAANTLGLKIRSTPFFGKTGGQQGLSKNP---KIITAAFSRDVLQGNNSAVIDLNT 318 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + + ++IK+ + EV +KK + +KA Q ++ Sbjct: 319 NTAVVLRIKKYNSEHRQLFNEVKEKIKKIL----NKQYAITKAQQFGENLLRDPHKIEMS 374 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 + L + + ++D ++K + + VF Sbjct: 375 SMEKISQKLKWHFMKQIDRQDKKLNKELLDAVFRL 409 >gi|254458909|ref|ZP_05072332.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] gi|207084180|gb|EDZ61469.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] Length = 488 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 79/483 (16%), Positives = 168/483 (34%), Gaps = 48/483 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ +++ + + I++ + F+ WG + V VG +V Sbjct: 1 MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSY---GDKAGAVAKVGNVEVTMGELQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ ++ + E+A+S GL + L L A + LE + + Sbjct: 58 KTYSNLYAQYNKMFQGNFDEEKAKSFGLQSQALKQLTDQALIINLALSYDLEINDAELLN 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 E+ F KD F+ +++ L++ ++ KEY K L + + + S Sbjct: 118 ELKTQEYF-FKDGVFNKEIYKQVLSQNNMSIKEYEVSVKKQLLIQKTLKLL--PVDVSKN 174 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 LD ++Y +L++ + D S+A L ++E + N+ + + +I Sbjct: 175 ELDIISSVLNIADKINYKILSDEKI--NIDTSDAALKPFWEARQQNFMSEVTYEVKFIKQ 232 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + ++ Y NK + E + + P + L Sbjct: 233 SRVSN----KYEESQINEHYAANKTHFKDVEGK-----LLPLEGARSSVINELDAKATKD 283 Query: 298 Q-----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP---VIHGSFGYV 349 + +A ++GK SD+ + + + + + + ++K +P I + Y Sbjct: 284 EALRGYIAYKKGKLASDVKVSTTTISASNNPYNENVLEQISKLSITSPYLKPILVNDEYF 343 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + + S SF+E KKD+ + K+ E K GT+ D I+ + Sbjct: 344 TFELLKVNSSKAKSFEEAKKDVLPMFVQEEKKNKLLELAKN-SVATFTGTTTDFITNEDA 402 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 ++ + L +F D K ++L +G+ + I Sbjct: 403 AKITNMEP----------------ADANEFLIALFSSQD---KRGFISLKNGNVVLYNIL 443 Query: 470 ESI 472 E Sbjct: 444 EQK 446 >gi|317051803|ref|YP_004112919.1| hypothetical protein Selin_1633 [Desulfurispirillum indicum S5] gi|316946887|gb|ADU66363.1| hypothetical protein Selin_1633 [Desulfurispirillum indicum S5] Length = 480 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 81/483 (16%), Positives = 160/483 (33%), Gaps = 67/483 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55 M+ R + KI L + F+ +WG+ G V+ V ++ + Sbjct: 1 MIHKFRNV--SAPVKILLWFVIATFVGSIFVVWGIQSGDQRSRG--YVIKVNDIEIGPNE 56 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F ++ Q IS G ++E R + + ++DNL+S A L Q + L + Sbjct: 57 FNRTYNQVHQNISALFGNQGDAEINRQ--IREIVIDNLISKALLLQEAQRRNLRVSDQEL 114 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 + IA F ++ FS ++ + L ++ + + + L + V +R + Sbjct: 115 FNSIAAIEAFQ-EEGVFSRTLYRNVLEANKLSPAIFEEMQKESLLVEKIQNQIVAEVRIT 173 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 L + ++ + DYI+L + + VL + E Y P+ +ISY Sbjct: 174 EDDLQEEFQWQQGRVAFDYIILFPELFADSVETNEQVLRAYHETNAKQYETPKSIQISYA 233 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-- 293 ++ Q+ A E QSL++ Sbjct: 234 FVPYDPQDS---------------------------------STQETASEVLQSLREAVV 260 Query: 294 ---KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K F AEE S ++ + + L F L +G +T VI G Sbjct: 261 QQQKDFATTAEEMEVEFVTSYIFDQNSIPEDLLRETRLIREAF-LMPQGRYTNVIRGQDK 319 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + P V ++E++ + ++ E + G + I+ Sbjct: 320 LYLVKKEQDIPPMVVPYEEIQDQVLADYIQHQSYVIAMEKAESFR-----GMELFAIAAE 374 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 L+ + D G + E +++ F + + + ++Q Sbjct: 375 VNAQPESTDLISY--MDTNGGP----GFNEDVMYLAFLTEVGQTAGPAEII--NIPFFLQ 426 Query: 468 IKE 470 + E Sbjct: 427 VTE 429 Score = 44.6 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 82/247 (33%), Gaps = 19/247 (7%) Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 E E + L E + + + + + ++ ++ +++ + +L+ Sbjct: 245 QETASEVLQSLREAVVQQQ--KDFATTAEEMEVEFVTSYIFDQNSIPEDLL---RETRLI 299 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F P + V V+ ++ IP EE+ V D+ ++ Sbjct: 300 REAFLM--PQGRYTNVIRGQDKLYLVKKEQDIPPMVVPYEEIQDQVLADYIQHQSYVIAM 357 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEM 559 KA G I + A +T+ I+ MD N F D + F V Sbjct: 358 EKAESF------RGMELFAIAAEVNAQPESTDLISYMDTNGGPGFNEDVMYLAFLTEVGQ 411 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL----TQMMNKDLLDSVIAYLKSQYS 615 P E +VT + ++ + L + ++L I +S+ + Sbjct: 412 TAG-PAEIINIPFFLQVTEKETPDMELFESLRPLLMEEVRERRRNEMLSDWIVEARSRAT 470 Query: 616 VTVHDNL 622 + V+ +L Sbjct: 471 INVNQSL 477 >gi|171463604|ref|YP_001797717.1| hypothetical protein Pnec_0905 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193142|gb|ACB44103.1| conserved hypothetical protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 61/393 (15%), Positives = 129/393 (32%), Gaps = 30/393 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M + +RK + + + ++++ F +G+S + + +V V + + + Sbjct: 1 MFDTVRKH-QRILQFVLMLLIVPSFAFFGVSSYSSFLDKETDLVKVNGKSITAQEVDMAA 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K++ + G V + A+S+ + IL+ L+ L + D+ L+ + + Sbjct: 60 KRQAERV----GGNV--QIAQSLQFRQAILNELLQQRILGFAVSDLRLQVGKEALVKSLQ 113 Query: 121 RSPLFH---GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 P +D F F LA G+NE ++ L + +V S Sbjct: 114 NIPQIRALYKQDGSFDDARFKQLLASNGLNEGQFYAGQAFDLKISQLVNSVARTEIGSPK 173 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + Y R V + + + + +PS L ++ + +PEY + YI+ Sbjct: 174 LSEIVSTLYEMERQVQIMPFDAKDYLSKVNPSQEELQAFYAANSKLFESPEYVDVEYIVL 233 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 KE S ++ + A LK + Sbjct: 234 KADSKEDAKVFSEKA-----------------DQFTKITYDQSDSLKPAADKLKLNIQSQ 276 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + + + +D K + V +V A V Sbjct: 277 KTVTRSGATGVAKDH-PLANPKVVQSLFSDEAVK--NKRNIEAVQTAPGVFVSARVVTFH 333 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 P+ + F++V ++ Q+ A + Sbjct: 334 PAQIMLFKDVATEVKRQVSQRMAEKLAVSAAAE 366 Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 82/247 (33%), Gaps = 19/247 (7%) Query: 381 SEKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 ++ E + + S+ + + K+ V +G K+ ++ Sbjct: 241 AKVFSEKADQFTKITYDQSDSLKPAADKLKLNIQSQKTVTRSGATGVAKD--HPLANPKV 298 Query: 440 LFRVFGKDDPLSKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + +F + +K + V G ++ ++ PA+ ++V T+VK+ + Sbjct: 299 VQSLFSDEAVKNKRNIEAVQTAPGVFVSARVVTFHPAQIMLFKDVATEVKRQVSQRMAEK 358 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 S A + K+ K+ + I+R N G + QV S Sbjct: 359 LAVSAAAERYATLQKDPKSASGFASPV--------WISRNKPGNLVGG--ALDQVMSINP 408 Query: 558 EMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 + N G+ ++++V + + + + + +AY + Sbjct: 409 DKFPALVSVNNPGVGAILYRVDQVRQPTGMDAKVHKAQA--LAAQSEFAGFMAYWRDVAG 466 Query: 616 VTVHDNL 622 V V + L Sbjct: 467 VKVINPL 473 >gi|78187764|ref|YP_375807.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum DSM 273] gi|78167666|gb|ABB24764.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum DSM 273] Length = 701 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 115/715 (16%), Positives = 216/715 (30%), Gaps = 120/715 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 + +R + + + L + WG+ + + SV VP+S + ++ Sbjct: 4 MTSMRDKTHIILYTLLAAFLALIVFEWGM-NFSGPAGRNGQAGSVNGTPVPYSEYEEIYR 62 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 Q Q S A +GL ++ + LV L++ + + + I R Sbjct: 63 QYSENYRQSNPGADISPEAE-LGLKEQAWNTLVDQKLLEEQFRKFRITIEDSEILAAIQR 121 Query: 122 -SP------LFHGK-DNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFVGG 171 P F S E + D + L ++ Sbjct: 122 PDPPQIIARNFMDPATGAIDRARLDSARKDPRNKEMWVQVEDIIRRELKIQKLLRALGTM 181 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEY 229 ++ +D+ + S +I + + A + L ++++++K+ + P Sbjct: 182 AHVTDREVDELVLRQYTRMSASFIPVPYSYAGDDASFPVKDDELRKYYDEHKEMFLQPPS 241 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEY-------------------------------- 257 + Y+ F + K ++ EL++ Sbjct: 242 RSAEYVFFPLVPSAKDSLLARSELESLRGDFASASSDSAFVSVQSDEPGGADRTFDRSVF 301 Query: 258 --EKNKEKYFSPEIR-----------------TVEQLVFPNQKEA--------------D 284 E + SP +R V+Q+V +Q A Sbjct: 302 SPEAGSAIFGSPAMRPGGMIGPVADQGAYRLLKVKQIVTASQPVARASHILIGFNPANRA 361 Query: 285 EAFQSLKKGKK----------FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 EA Q+ K + F LA + G + S LG F E + AD++F Sbjct: 362 EAQQAGAKAQDILRQLKGGASFADLARRYSADIGSARSGGQLGWFRSERMV-PEFADAVF 420 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 S A G + FG I V S V ++ +R + + + Sbjct: 421 SAA-PGTVVGPVATRFGLHIIKVEGFDRSAF-----VGSALSRNIRPSTETAESVRRIAM 474 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + A + + EK + G + + +I Y E++ F Sbjct: 475 AFQMDAKDKGFAKTAETEK------REIAKTGDFTRNMPIPSIGYSEKIASFAFKA--GE 526 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 V + + + + RKL +E+ + + + K K E + K LV Sbjct: 527 GDLSDVLDTERGFYVMSLTGKNDTGYRKLDDELKSAITTELKREKKGEFIKKKLQALV-- 584 Query: 510 YSKEGKNFRDIGKN-LGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPIE 566 S G + I SL T + I D + + PV+ + P+ Sbjct: 585 -SVPGATLQKIAAADKNFSLFTADDIRWSDGFIPGYGVDRPLVEAMAGMPVQKL-SLPVR 642 Query: 567 NGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + VF V + P EK L QM + L A ++ Q + Sbjct: 643 GNDGFAVFMVQKKTLPEGLDPALEKAAVAPRLLQMKQEQLFSEYFASIRKQAKIE 697 >gi|218961314|ref|YP_001741089.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas acidaminovorans] gi|167729971|emb|CAO80883.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas acidaminovorans] Length = 595 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 91/636 (14%), Positives = 203/636 (31%), Gaps = 61/636 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + V I +V + G+ + L S + V K+ + + Sbjct: 1 MLDQLRKKQK-VVIYIVAIVFILGMAAVGIGELL---SPKPYLGKVNGTKITYEMYQQKI 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ ++ E R ++ + + LV+ Q I+ ++ V E+ Sbjct: 57 QEIYERYAEMYKDQPIDENMRR-NIENQAWETLVNDILWQQQIKKHKIKITEDDVLTEMQ 115 Query: 121 RSP---LFHGK----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 +P L + + +F ++S L ++ L R + Sbjct: 116 NNPPQELMQNESLQTNGRFDKSKYLSALKNNPQFFAAMEEYVRGYLPRQKLQEKIKAQAG 175 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRI 232 + L ++ S +I ++A + +++K ++ Y+ RI Sbjct: 176 ITIDSLKAQYAKETDSISGKFIWFEPNK-SDPVTVTDAEIKAYYDKNRETEYKKGPASRI 234 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 Y + + S+ + + A+E + ++ Sbjct: 235 KY-------LAFEEKPSDKD-----------------------YASVKLLAEELYNRARR 264 Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F LA+E SLG F K + F+L K G+ + + SFG+ Sbjct: 265 GEDFATLAKEYSDDPGSKDNGGSLGVFGKGQMV-PEFEQVAFAL-KVGEISKPVKTSFGW 322 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I +I T++ + ++ + I +AS++ K E A I Sbjct: 323 HIIRCDSI---ATITKDNPQIKASHILLIVEASDETKNAILDKAESAAKLIKKKGIDAAA 379 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 K + +++ D+ D + + I LL + + D + + V + Sbjct: 380 KELGVEVQETDWVPHDQEY--IPGIGNNGALLQFMRKGKEKAISDVITDQQNRKIVAV-L 436 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 ++ E+V +K + K V KA + V +Y + F K G + Sbjct: 437 TDNKKVYYEDFEKVKLRIKYQLEKEKKVANVKKKAEEFVAKYP-SSEYFSAAAKE-GWQI 494 Query: 529 LTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQ 585 + N R + N + + + S+++ K Sbjct: 495 IELNNHKREQSVPNVGLCEEFTNAALALEAGQTSGLIHTKEGSFIISCTERIKPDFNAFA 554 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 + + + + + + ++ + + Sbjct: 555 KDKERQEQIRKTLEDAAWNRWYDQMRKSAKIIDNRA 590 >gi|255533907|ref|YP_003094279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus DSM 2366] gi|255346891|gb|ACU06217.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus DSM 2366] Length = 698 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 97/715 (13%), Positives = 220/715 (30%), Gaps = 120/715 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-----FSVSGSSTVVSVGRQKVPFSSF 56 + +R + I + + + + + DA+ F V SV +++ F Sbjct: 4 MTFLRNRA----GYILVGAIGFAIVAFLVGDAINVGKPFWAESQKVVGSVDGEEISIDQF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 Q L Q+ G N+ + +++ +D + ++ L + +GL ++ Sbjct: 60 GPKVDQSLAQFKQQYGGSGNA-QMQAMAVDN-VWQGEIASILLGKEYNRLGLTISSDELF 117 Query: 117 GEIAR-------SPLFHGK-DNKFSHDVFVSRLAREGINEKE------YIDHYTKMLSRT 162 + F + + ++ L ++ N + + K + Sbjct: 118 DLLQGKNPSPLIVQYFGNPQTGEVNRAEVLASLKQQDKNPQLEKQWELLQNEIEKQALQK 177 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYK 221 + + + L + + + S Y +L+ VP A P+ + + ++ + K Sbjct: 178 KYANLISNSIYVTTLEANDDYQNRNKLASFKYTLLDYAAVPDATVKPTESDYSDYYNENK 237 Query: 222 DNYRAP------EYKRISYILFDVHEKEKKIEI--------------------SNDELQA 255 + P EY S K ++ S+ ++ Sbjct: 238 KRFENPSETRSFEYVAFSVSPTKEDSAAVKTQVDKLAADFRTAANDSLFAAVNSDVKVPY 297 Query: 256 EY----------------------------------EKNKEKYFSPEIRTVEQLVF---- 277 Y K + FSP+ ++ Sbjct: 298 AYMSKGKLDPAVDSVVFNLPAGSYYGPRFSGNSYKLIKVIDTRFSPDSVKASHILLDPSK 357 Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSI 329 +K AD ++ G F LA++ G LG+FS+ + D+ Sbjct: 358 MGGADKAKKLADSLKTLVQNGASFAALAKQYSIDGSKDKGGELGTFSRGQMV-PVFEDAA 416 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSN-IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F+ K GD V+ FG + + I S ++K +A+ K + + Sbjct: 417 FN-GKAGDL-KVVTSQFGVHLIKIEKQIGSSKVAKLAYIEKGLAS---SNKTRDAAYKKA 471 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 + + ++ V + + G + QL+ + D Sbjct: 472 SAFLNEVKSNNFAELAQKKGYTVGVADRVTPTQGF------APGLDSPRQLIRDAYATDK 525 Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 + D +Y+ ++ + P LE+V +++ +T A+ ++ K N+ + Sbjct: 526 GEILKEVYQM-DNAYVVARVTDIKPKGTLSLEDVKKEIEPMVRTAVKAKMLTEKMNKAL- 583 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIE 566 + N + + LG ++ I + + + VF + I+ Sbjct: 584 ---QGSANLAQVAQKLGKTVAPVENIVFANPIIPGAAQENKLVGSVFGSQPGKL-SKAID 639 Query: 567 NGLSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 F V S+ P+ K + Q + L + L+ + + + Sbjct: 640 GTAGVYAFTVDGFSQPAPLANTYKQKEAMMQAGGQRALGAAFQALQDKSKIKDNR 694 >gi|225023875|ref|ZP_03713067.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC 23834] gi|224943349|gb|EEG24558.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC 23834] Length = 513 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 85/509 (16%), Positives = 177/509 (34%), Gaps = 51/509 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M I+ K R ++++ L ++ V F+ +G + L S SS + +G + Sbjct: 1 MFAIVEKHRR--LSQVLLGLITVTFVGFG-AQTLTSGMHSSYISKIGNTHITAEQVQELL 57 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGEI 119 ++ + + +LV A DQ ++G+ ++ G I Sbjct: 58 RE-------------APRHSDQPISKDDVYQSLVQQAYFDQGAAELGVGELSIEQIKGVI 104 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 R P F + +FS + F + L + GI E+ I+ R ++ + G S+ Sbjct: 105 TRDPSFQ-VNGQFSPEQFQAYLRQRGITEERLIEEMRSQYRRQTLISLLSNGNIVSDSQA 163 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 +Q R + N + P++A L +FE K Y P ++ ++ +V Sbjct: 164 NQILALTGSERELRTAPFNAADFASKVQPTDAALRSYFEANKAKYALPLAVKLEFVDLNV 223 Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 E K+ +S ELQ Y P +V+ + + ++ A ++ Sbjct: 224 EELAKQQTVSAQELQEAYSNLPTAASEAKPPFESVKAQLEESVRQRKAAQALGNAREQLA 283 Query: 298 QLAEEQGKSLSDISL----------GSFSKEYIPDVSLADSIFSLAKKGDF------TPV 341 QLA + SL ++ S+ L ++ + + V Sbjct: 284 QLAFDHPDSLQKVAQEMKLPLQKHEEWLSQPEAAAAKLPQAVQEAMFSAEVIERRHNSEV 343 Query: 342 IHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + G + + +++ + SF+E K+ + ++++ + + L G + Sbjct: 344 LDMGNGVLRVLRATDVSKARNQSFEEAKEAVRKDYVAVESAKLAQAAAAQALSNLQAGKA 403 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 +D + + L G V A P + LP+ Sbjct: 404 VDNLQWSNPEKASATQLQQAVGLQNFAAIVKAHPQN------------GKPGYAVITLPN 451 Query: 461 GSYMWVQIKESIPA--RDRKLEEVLTDVK 487 G+ V+++ ++L E+ V Sbjct: 452 GNAALVEVRAISLPENSKQQLPELRQQVA 480 Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 E V +++ + K A+ + + QL + + + + + L + Sbjct: 250 EAKPPFESVKAQLEESVRQRKAAQALGNAREQLAQLAFDHPDSLQKVAQEMKLPLQKHEE 309 Query: 534 -INRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 +++ + +FS V + + NG+ V + T+ Q + Sbjct: 310 WLSQPEAAAAKLPQAVQEAMFSAEVIERRHNSEVLDMGNGVLR-VLRATDVSKARNQSFE 368 Query: 589 KFISYLT 595 + + Sbjct: 369 EAKEAVR 375 >gi|78045210|ref|YP_359073.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Carboxydothermus hydrogenoformans Z-2901] gi|77997325|gb|ABB16224.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Carboxydothermus hydrogenoformans Z-2901] Length = 337 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 69/393 (17%), Positives = 145/393 (36%), Gaps = 74/393 (18%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 +V + + F++ AL V V + + F + Q + + G + S Sbjct: 7 VVAVLLTFVL-----ALIVAGCGDYVAKVNGKTISKKDFDRRFAQVQADMKLR-GVDLTS 60 Query: 78 ERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SH 134 + + L ++ LD +++ + ++ ++ +E + +I +F S Sbjct: 61 TEGQKMLQSLKQQTLDQMINEILISEYGKEKKIEPTKDEITNKINEIRA------QFPSP 114 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 F L I +K+ + L + G+ Sbjct: 115 QDFEKALKDRNITDKDLQEMVRVQLINDKIYNEVTKGI---------------------- 152 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYILFDVHEKEKKIEISNDE 252 S + +++EK+K+ +++ PE +++ +IL V++ Sbjct: 153 ------------TVSEQEVKEYYEKHKNEPDFQTPEQRQVRHILIAVNDGNA-------- 192 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 +N + RT +K A+E + +K GK F LA+E+ Sbjct: 193 ------QNNPHFNINVKRT----DAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKEN 242 Query: 313 G---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 G +FS+ + D+ F+L K GD T + +FGY I + I P+ +++EVK Sbjct: 243 GGQYTFSRGEMVK-EFEDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVK 301 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + + N + K E + + L++ + T + Sbjct: 302 EQLKNYLLEKKKREAYNKFLEDLKKKAKIETKL 334 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 5/131 (3%) Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 VK + + K + +++ K GK+F + K + + Sbjct: 201 NVKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKENGGQYTFSRGEMVKEFEDA 260 Query: 552 VFSGP-VEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606 F+ + P++ Y + K+ + K++ +YL + ++ + Sbjct: 261 AFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVKEQLKNYLLEKKKREAYNKF 320 Query: 607 IAYLKSQYSVT 617 + LK + + Sbjct: 321 LEDLKKKAKIE 331 Score = 38.4 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 37/289 (12%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEADEAFQ 288 I+ IL + KEKKIE + DE+ + + + ++ SP+ + ++ ++ + Sbjct: 78 MINEILISEYGKEKKIEPTKDEITNKINEIRAQFPSPQDFEKALKDRNITDKDLQEMVRV 137 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 L K + ++ + G ++S+ + + +++ + + Sbjct: 138 QLINDKIYNEVTK--GITVSEQEVKEYYEKHKNEPDFQT-------------PEQRQVRH 182 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 ++ V++ F + + + + K+ + L + + G +++ Sbjct: 183 ILIAVNDGNAQNNPHFN---------INVKRTDAEAKKLAEELIKQIKAGKDFATLAKE- 232 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAI--PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 D G G + ++ F P T Y + Sbjct: 233 --------KSDDPGVKENGGQYTFSRGEMVKEFEDAAFALKKPGDITETPVKTAFGYHII 284 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 ++++ IPAR + EEV +K K E + L + E K Sbjct: 285 KLEKIIPARQKTYEEVKEQLKNYLLEKKKREAYNKFLEDLKKKAKIETK 333 >gi|224824986|ref|ZP_03698092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602657|gb|EEG08834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 340 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 68/359 (18%), Positives = 139/359 (38%), Gaps = 34/359 (9%) Query: 280 QKEADEAFQSLKKG-KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 + A+ + ++ KF +LA+ + G + + LG F + + D F + + Sbjct: 2 RSAAEVLLKEVRANPAKFAELAKTRSQDPGSAANGGDLGFFGRGAMVKP-FEDVAFRM-Q 59 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + ++ FG+ I + +K F VK ++ +++ KA+ + + ++L E Sbjct: 60 PGQISELVETEFGFHILKLDEVK---QPVFAAVKGEVEQRLKRQKAAAQFRAASEKLGEL 116 Query: 395 LAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA-IPYKEQLLFRVFGKDDPLSK 452 S+ IS + K+ + V+GK + + +LL F D K Sbjct: 117 AYQQADSLKAISDQLKLSP------QHSDWLVRGKPASDPVLNNPKLLEAAFSDDVLKGK 170 Query: 453 --DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 V L + + V++ E P R + L EV +K + + A+ + + L+ E Sbjct: 171 HNSEPVDLGKNTLVVVRVAEHQPERQQTLAEVQNVIKAELVRREGAKLAEKRGDALLTEL 230 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENG 568 K GKN ++R + VF+ + F ++G Sbjct: 231 -KAGKNIDSQ------PWEPAQTVSR--RSFGALSLPEVRAVFAASATKLPAFAGVKQDG 281 Query: 569 LSYVVFKVTNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 +YVV+++ P E+ + + +M + S + L+ +Y VT+ + Sbjct: 282 GNYVVYRIDKVIPAPAPSLAERSQLSGLIGEMNANAQVASYLEALREKYKVTLSQQPAE 340 >gi|224373001|ref|YP_002607373.1| hypothetical protein NAMH_0972 [Nautilia profundicola AmH] gi|223589838|gb|ACM93574.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 478 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 77/512 (15%), Positives = 178/512 (34%), Gaps = 45/512 (8%) Query: 1 MLEIIRKASRTWVAKIFLVVLF---VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+E ++ + V I++ + F+ WG SSTV + +V Sbjct: 1 MIEWMQTHRKWLVITIWIATIAFIGAGFVGWG---QFQFGRKSSTVAKIKDTEVSIQDVQ 57 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++++G ++ A +GL K+ D + L Q+ +D+G+ V Sbjct: 58 EVYNNLFQEKNKQLGGTLDDATAEKMGLKKQAFDMAIQQGILRQYAKDLGMYVTDEEVAK 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++ + F ++ L + G K++ K L ++ ++PS Sbjct: 118 QVLQ--YFK------DKKTYLMYLKQTGQKAKDFEAKLRKQLLIQKLLTALH--IKPSKT 167 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L + + +++ ++N V + S + ++EK K Y++P +I+ + Sbjct: 168 LQLTFASALYNSDNLEIKIINKSSV--KVNLSEDEIKAFWEKNKQKYQSPTMYKIAIVKT 225 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + ++L+A Y +NK Y + + + NQ + D + KK Sbjct: 226 PIKGVA-----TENDLKAFYNENKTNYRNDKGEILTYEEAKNQVKKDYLAKISKKDAIIA 280 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++G ++ + + + IP A+ + L + G + + Y+ A + Sbjct: 281 YKKLKEGAENYELLTLTINNKIIP----AEKMQKLIQTG-YLKPFVDNNEYISAKLVEEI 335 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + ++E K + + K + ++ K + + + Sbjct: 336 KPKPLPYEEAKAQVTKDLLNIKTLQALENKAKEALKGFNGTKT--------------GFV 381 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 + +KG + + LF F + + AL + ++ E Sbjct: 382 TKYDANKIKG---LSPQEATEFLFTEFSLELNKNYLLIPALNPQKAVVYKVLEQKLLDKA 438 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 K E+ V A + L+ + Sbjct: 439 KYEKNKEQVAAMADATLNAALLDDLIKDLMAK 470 >gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila DSM 6192] gi|306533370|gb|ADN02904.1| PPIC-type PPIASE domain protein [Spirochaeta thermophila DSM 6192] Length = 336 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 62/357 (17%), Positives = 128/357 (35%), Gaps = 74/357 (20%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V ++VP ++ + Q+ G V+ E + L +++LD L+ Sbjct: 43 SGEVAARVNGEEVPSKEVEREVQRYVAQY-QQYGMEVSPEEEQK--LREQVLDVLIGRLL 99 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L Q + +GL D +V +I + + + S + F + LA+ G E+E+ + ++ Sbjct: 100 LLQEAKRMGLSVDQAQVEAQIEQ---YKLQSG--SEETFKNILAQAGYTEEEFREELSRA 154 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 VV V S+ +++ Sbjct: 155 FLLQQVVD---------------------------------EKVTKHLSVSDEEARAYYD 181 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + + PE R +IL + S +E +A Y Sbjct: 182 ENPEQFEQPEQIRARHILIRLDPDA-----SKEEEEAAY--------------------- 215 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + E + LK+G F +LA + + LG F + + + ++ F+L + Sbjct: 216 --AKIHEVQEKLKQGADFAELARTYSEGPSAPNGGDLGFFGRGQMV-PAFEEAAFAL-EV 271 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + V+ +G + V++ + + SF+EVK + + K+SE + + L+ Sbjct: 272 NQVSDVVRTEYGLHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELK 328 Score = 41.5 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 9/135 (6%) Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + E ++E L G E++R + P G +P Sbjct: 206 ASKEEEEAAYAKIHEVQEKLKQGADFAELARTYS----EGPSAPNGGDLGFFGRGQMVPA 261 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 E+ F + +++ V + +Q+ + A EEV +K+ K+ Sbjct: 262 FEEAAFAL-----EVNQVSDVVRTEYGLHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKS 316 Query: 496 AEEVSSKANQLVLEY 510 +E +++ +L + Sbjct: 317 SEAINALVEELKGKA 331 >gi|297519828|ref|ZP_06938214.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 141 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIG-GGNNYAAKVNDQEISRGQFENAF 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFV 138 I +P F D KF + + Sbjct: 120 AIFATPAFQ-VDGKFDNSRYN 139 >gi|83816153|ref|YP_445540.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855] gi|83757547|gb|ABC45660.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855] Length = 691 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 84/714 (11%), Positives = 216/714 (30%), Gaps = 117/714 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFI 57 + +R+ + + L +L + F +IW L D+ + V +V + + Sbjct: 4 MNTLRQNTG-----VILWILVLSFGIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K++ Q++G +N + + ++ + +V+ L Q ++ +G+ V Sbjct: 59 RILKRQRQRFQQQMGGDMNPQM--ESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEA 116 Query: 118 EIA-RSP------LFHGKDNKFSHDVFVS----------------RLAREG--------- 145 + +P F + ++ + + L R+ Sbjct: 117 MVFGENPHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLV 176 Query: 146 -----INEKEYIDHYTKMLSRTDVVGMFVGGMRPSN----LLLDQAKRFYFENRSV--DY 194 ++E + D+Y + S + + R S+ + + +Y NR Sbjct: 177 QSTIQVSEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKRE 236 Query: 195 IVLNNRHVPAIADPSNAV----------LTQWF----------------EKYKDNYRAPE 228 + ++ + + L F + + YR P+ Sbjct: 237 KTVTLQYATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPD 296 Query: 229 Y---KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 + + + + + + ++ + E Sbjct: 297 QMNARVADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKTDQADSE 356 Query: 286 AFQSLKK--------GKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 L+ F ++A + G + LG F++ + D + D+ F A+ Sbjct: 357 VAGRLRAIRDSLEAGAASFAEMARRYSDDGSASDGGDLGWFARGSMVD-AFEDAAFG-AE 414 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + FGY + V D+A + ++A+ + + +L + Sbjct: 415 PGTLVGPVRSEFGYHLIRVEARASQAVQV-----ADLAYNLSPSRAT--LSDKESQLGDL 467 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 + + + + V + Q L + Sbjct: 468 AYFAEEEGAFEEEAQRLGLSVQEVQVETDQSSVPGIGQSAALSQFLESASN----GTISD 523 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L D ++ ++ P R EV + ++ + K + + + + + Sbjct: 524 VIELSD-KFVVAEVTNVTPEGYRSFSEVKSQIRPQVELQKKRAVQTRRMERALAQ----- 577 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYV 572 F + + LG L T + + + G + + VF N +++ Sbjct: 578 NTFEALPEALGTELRTQSDLTYSTSTVPGLGQEPQFVGTVFGLDEGETSGVVAGNNAAFI 637 Query: 573 VFKVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 V + P+ + + + L + + + + IA LK ++ + + ++ Sbjct: 638 VKTTQKTTPPPLTDQKRKQLRQRLLKQRRQQVSSNWIAALKEDATIKDNRSQLR 691 >gi|145589120|ref|YP_001155717.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047526|gb|ABP34153.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 487 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 144/384 (37%), Gaps = 38/384 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M + +RK + + +I L++ VP F+++G+S + + +V V + + ++ Sbjct: 1 MFDTVRKHQK--LLQIVLMLFIVPSFVMFGISSYSGFLDKETDLVKVNGKPITAQEVDSA 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K++ + G + + A+S+ + IL+ L+ L + ++ L+ + + Sbjct: 59 AKRQAERV----GGNI--QIAQSLQFRQAILNELLQQRILGFAVINLRLQVGKEALIKSL 112 Query: 120 ARSPLFH---GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 P +D F F LA G+NE+++ L + V P+ Sbjct: 113 QNIPQIRALYRQDGSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTELPTP 172 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 L + Y R V + + + +P+ L ++ + +PEY + YI+ Sbjct: 173 KLSEIVSTLYETERQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESPEYIDVEYIV 232 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 KE K FS + + + A LK Sbjct: 233 LKADPKED-----------------AKGFSAKADQFANMTYDQADSLKPAADKLK----- 270 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF---SLAKKGDFTPVIHGSFGYVIAHV 353 + + ++G + S S G+ + + + S+F ++ K + + +V A V Sbjct: 271 LSIQTQKGITRSGPS-GASKDNPLANPKVVQSLFGDDAVKNKRNIEAIQTSPGVFVSARV 329 Query: 354 SNIKPSFTVSFQEVKKDIANQMRI 377 P+ + ++EV ++ Q+ Sbjct: 330 VTFHPAQILPYKEVATEVKRQVSQ 353 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 71/242 (29%), Gaps = 10/242 (4%) Query: 384 VKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + S+ + + K+ + +G G +++ Sbjct: 244 FSAKADQFANMTYDQADSLKPAADKLKLSIQTQKGITRSG--PSGASKDNPLANPKVVQS 301 Query: 443 VFGKDDPLSKDHT--VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 +FG D +K + + G ++ ++ PA+ +EV T+VK+ + Sbjct: 302 LFGDDAVKNKRNIEAIQTSPGVFVSARVVTFHPAQILPYKEVATEVKRQVSQRAAEKLAI 361 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 + A + K+ K + S + + ++ P + Sbjct: 362 AAAAERYASLQKDPKLATGFAAPIWVSRNKPANLVGLALDDVMSVNTN-----QLPAIVS 416 Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 P Y V +V + + + + +AY + SV V + Sbjct: 417 VANPGVGTTLYRVDQVRQPAGVDAKAHKAQAQQIQALSAQSEFAGFMAYWRDAASVKVIN 476 Query: 621 NL 622 L Sbjct: 477 PL 478 >gi|288817631|ref|YP_003431978.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6] gi|288787030|dbj|BAI68777.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6] gi|308751229|gb|ADO44712.1| Formiminotransferase domain protein [Hydrogenobacter thermophilus TK-6] Length = 444 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 74/442 (16%), Positives = 155/442 (35%), Gaps = 67/442 (15%) Query: 1 MLEIIRKASR--TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M +I+K ++ + F+ G + SV G V V + Sbjct: 1 MYTLIQKHKTLLVFIVTVASGAFFLWLFFTGSVRDITSV-GKKCVAEVNGSCITLRD--- 56 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++EL S + + K++++NL++ L Q +G A V Sbjct: 57 -YRRELLRFSNIQSRDL------EEVIKKQVIENLITQELLYQKARSLGFYASDEEVVSV 109 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I P F + FS + LAR G+ EY D+ +ML+ ++ + + S Sbjct: 110 IKSDPTFQ-EGGVFSASKYKEMLARLGLEPGEYEDYIRRMLTVQKLLALVSNSVYLSEAE 168 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + S ++ V P+ + ++EK K+ +R PE Sbjct: 169 KNINLAVQSTLLSGKLYIITPSDVEVSYTPTQEEMMSFYEKNKELFRRPE---------- 218 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + V ++ + +E ++++K+GK+ Sbjct: 219 ------------------------------KKLVRVWAEKDKAKVEEIYRAIKEGKQ--- 245 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + L K +VS D K G V Y+I ++ ++P Sbjct: 246 -VQGYTEYLLPDDANRLPKGVSSEVSKLD-----QKDGIL--VTKEGDEYLIVYLYRVEP 297 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + SF+EVK+ I + + + + +++ + + + L G + + + + Sbjct: 298 AGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTEGKDVS--VKYLTFEDTPVDQI 355 Query: 419 DFAGKDVKGKEVAAIPYKEQLL 440 K +G+ V+ I K+++ Sbjct: 356 MSIAKVKEGQVVSFILSKQKVF 377 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 14/224 (6%) Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL--SKDHTVALPDGS 462 + ++K ++ GK V+G +P L + + KD + +G Sbjct: 226 AEKDKAKVEEIYRAIKEGKQVQGYTEYLLPDDANRLPKGVSSEVSKLDQKDGILVTKEGD 285 Query: 463 -YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 Y+ V + PA R EEV ++ + A + KA ++ ++ G Sbjct: 286 EYLIVYLYRVEPAGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTE--------G 337 Query: 522 KNLGASLLT--TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 K++ LT ++++ + K +S + S ++ + + G V Sbjct: 338 KDVSVKYLTFEDTPVDQIMSIAKVKEGQVVSFILS-KQKVFGPYELSQGYGVFVITDRKK 396 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 K +E K + M + ++ +I +L + +++ +I Sbjct: 397 KPADEEEIKKLTQDILNMKSDATVNYLIEHLIRSAKIKINEEVI 440 >gi|332295328|ref|YP_004437251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium narugense DSM 14796] gi|332178431|gb|AEE14120.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium narugense DSM 14796] Length = 409 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 64/387 (16%), Positives = 124/387 (32%), Gaps = 92/387 (23%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 K +L VL V + G V +V + + + + + Q Sbjct: 41 IKFWLGVLIVVLAVSGAYTLFEF----QPVATVNGEPIRRYEYEKTLGDAVSYYEQYGIN 96 Query: 74 VVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + + + A L K++L++++ + Q + ++ V I F Sbjct: 97 LYDPKEASFFLELKKQVLNHMIDNKIITQEAKKENIKITPSEVDARIDEIK------KSF 150 Query: 133 SHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 + F LA++ I+ E + + L+ + Sbjct: 151 PSEKDFYEALAKQKISMGELRNIIEQQLTAEALFKKLTS--------------------- 189 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 S A + ++E++K + PE + Sbjct: 190 -------------NVTISEAEVKAYYEEHKKEFVQPEQIHL------------------- 217 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---- 307 ++ ++EA+ ++ LK+GK F LA+E Sbjct: 218 ---------------------RHILVKTEQEANNIYEQLKQGKDFATLAKEYSIDTPTKD 256 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 LG SK + LA + L K +F+ I FGY I +PS +SF EV Sbjct: 257 KGGDLGWISKASLV-PDLAKAADEL-KDNEFSKPIKSPFGYHIIEKLGTRPSKELSFDEV 314 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394 K + Q+ K ++ +++ +K +E Sbjct: 315 KNTLTAQLLRNKQAQSLEKWFKEKKEQ 341 Score = 40.7 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 86/252 (34%), Gaps = 34/252 (13%) Query: 262 EKYFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKKF-IQLAEEQGKSLSDISLGSFSKE 318 K + E + + P++ +A DE +S K F LA+++ IS+G + Sbjct: 120 NKIITQEAKKENIKITPSEVDARIDEIKKSFPSEKDFYEALAKQK------ISMGEL-RN 172 Query: 319 YIPDVSLADSIFS-LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I A+++F L + ++ K F + I + + Sbjct: 173 IIEQQLTAEALFKKLTSNVTISEAEVKAY------YEEHKKEFVQP-----EQIHLRHIL 221 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 K ++ Y++L++ G +++ SID P D G + + +P Sbjct: 222 VKTEQEANNIYEQLKQ----GKDFATLAKEY---SIDTPTKDKGGDLGWISKASLVPDLA 274 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + + + Y ++ + P+++ +EV + K A+ Sbjct: 275 KAADELKDNEFSKPIKSPF-----GYHIIEKLGTRPSKELSFDEVKNTLTAQLLRNKQAQ 329 Query: 498 EVSSKANQLVLE 509 + + + Sbjct: 330 SLEKWFKEKKEQ 341 >gi|294507423|ref|YP_003571481.1| peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber M8] gi|294343751|emb|CBH24529.1| Putative peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber M8] Length = 691 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 84/714 (11%), Positives = 217/714 (30%), Gaps = 117/714 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFI 57 + +R+ + + L +L + F +IW L D+ + V +V + + Sbjct: 4 MNTLRQNTG-----VILWILVLSFGIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K++ Q++G +N + + ++ + +V+ L Q ++ +G+ V Sbjct: 59 RILKRQRQRFQQQMGGDMNPQM--ESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEA 116 Query: 118 EIA-RSP------LFHGKDNKFSHDVFVS----------------RLAREG--------- 145 + +P F + ++ + + L R+ Sbjct: 117 MVFGENPHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLV 176 Query: 146 -----INEKEYIDHYTKMLSRTDVVGMFVGGMRPSN----LLLDQAKRFYFENRSV--DY 194 ++E + D+Y + S + + R S+ + + +Y NR Sbjct: 177 QSTIQVSEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKRE 236 Query: 195 IVLNNRHVPAIADPSNAV----------LTQWF----------------EKYKDNYRAPE 228 + ++ + + L F + + YR P+ Sbjct: 237 KTVTLQYATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPD 296 Query: 229 Y---KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 + + + + + + ++ + E Sbjct: 297 QMNARVADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKTDQADSE 356 Query: 286 AFQSLKKGKK--------FIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 L+ + F ++A + G + LG F++ + D + D+ F A+ Sbjct: 357 VAGRLRAIRDSLEAGAAFFAEMARRYSDDGSASDGGDLGWFARGSMVD-AFEDAAFG-AE 414 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + FGY + V D+A + ++A+ + + +L + Sbjct: 415 PGTLVGPVRSEFGYHLIRVEARASQAVQV-----ADLAYNLSPSRAT--LSDKESQLGDL 467 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 + + + + V + Q L + Sbjct: 468 AYFAEEEGAFEEEAQRLGLSVQEVQVETDQSSVPGIGQGAALSQFLESASN----GTISD 523 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + L D ++ ++ P R EV + ++ + K + + + + + Sbjct: 524 VIELSD-KFVVAEVTNVTPEGYRSFSEVKSQIRPQVELQKKRAVQTRRMERALAQ----- 577 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYV 572 F + + LG L T + + + G + + VF N +++ Sbjct: 578 NTFEALPEALGTELRTQSDLTYSTSTVPGLGQEPQFVGTVFGLDEGETSGVVAGNNAAFI 637 Query: 573 VFKVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 V + P+ + + + L + + + + IA LK ++ + + ++ Sbjct: 638 VKTTQKTTPPPLTDQKRKQLRQRLLKQRRQQVSSNWIAALKEDATIKDNRSQLR 691 >gi|327392985|dbj|BAK10407.1| peptidyl-prolyl cis-trans isomerase D PpiD [Pantoea ananatis AJ13355] Length = 309 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 130/321 (40%), Gaps = 22/321 (6%) Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 +G PD L +KG + VI S G++IA + +I P +V+ ++ Sbjct: 1 MGWLEPSTTPD---ELKNAGLKEKGQLSGVIKSSVGFLIARLDDIIPEQVKPLADVRSEV 57 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 A++++ KA + + +++ E A + ++ E+ + + +D K++ Sbjct: 58 ADEVKQEKAVDAFYKLQQKVSE--AASNDNESLAGAEQASGMKATETGWFSRDDVPKDLD 115 Query: 432 AIPYKEQLLF-RVFGKDDPLSKDHTVALPDGSY-MWVQIKESIPARDRKLEEVLTDVKKD 489 K+ + + G++ + + DG ++I E P LE+V + Sbjct: 116 FDAVKQAIFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDT 175 Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549 K K ++ ++A++L+ + K GK +D+ K G +L + ++R + Sbjct: 176 LKHDKATQQAKAQADKLLADL-KAGK--QDVLKAAGLTLSASKTVDRNTQD------PVA 226 Query: 550 SQVFSG--PVEMVKCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLL 603 F+ P + + + + + V+ V G P + ++ + +TQ + Sbjct: 227 QAAFNLPQPEDNKPSWGVSEDMQGNVVLVAVDKVSTGTMPQAQINEMVKGVTQNNAQLAF 286 Query: 604 DSVIAYLKSQYSVTVHDNLIQ 624 ++++ L+ + + Q Sbjct: 287 EALLQNLRKEAKIKYGAAAQQ 307 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 30/246 (12%) Query: 291 KKGKKFIQLA-EEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGS 345 LA EQ + G FS++ +P ++ +IF+ G + S Sbjct: 80 AASNDNESLAGAEQASGMKATETGWFSRDDVPKDLDFDAVKQAIFNGGLVGQNGAPGNNS 139 Query: 346 FGY-------VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + +S KP ++VK I + ++ KA+++ K +L L G Sbjct: 140 DIISVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADLKAG 199 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 K + L ++ + Q F + +D Sbjct: 200 KQ-----DVLKAAGLTLSASKTVDRNTQDP-------VAQAAFNLPQPEDNKPSWGVSED 247 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 G+ + V + + + + K V T L+ KE K Sbjct: 248 MQGNVVLVAVDKVSTGTMP-----QAQINEMVKGV-TQNNAQLAFEALLQNLRKEAKIKY 301 Query: 519 DIGKNL 524 Sbjct: 302 GAAAQQ 307 >gi|326798824|ref|YP_004316643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp. 21] gi|326549588|gb|ADZ77973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp. 21] Length = 701 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 95/679 (13%), Positives = 213/679 (31%), Gaps = 112/679 (16%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F S + V ++ + + ++ F N +Q + + Q++G ++ + D + + Sbjct: 38 FWASHQNEVGNIDGESISYTDFNNQVEQSINNMRQQMGGNMSPQMTSYAVED--AWNQNL 95 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIAR-------SPLFHGK-DNKFSHDVFVSRLAREGI 146 LD+ +E IGL + + + F + + LA Sbjct: 96 RRLLLDKELERIGLGVGKNELQDMVTGKNPSPMIAQNFGNPQTGEIDRNQLNQFLANVAK 155 Query: 147 NEK---------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 +++ + + + ++L + + + Y++L Sbjct: 156 EPANSELSRQWGTFLEAMRDNRLQQKYNNLIQNSVYVTSLEATEDYNQRNKIANFSYVLL 215 Query: 198 NNRHVPAI-ADPSNAVLTQWFEKYKDNYR------------------------APEYKRI 232 + +P ++A ++ ++K ++ A E Sbjct: 216 DYASIPDKDIKLTDADYQNYYNEHKAAFKNQMETRSFDYVVFNAQPTAQDTALAKETITK 275 Query: 233 SYILFDVHEKEKKIEISNDELQA----------------------------------EYE 258 + +SN E + YE Sbjct: 276 LTEELAKSTNDSLFAVSNSEQKRPVSYIKKGTLSPALDSLVFSAAKGSTVGPVYSNGVYE 335 Query: 259 KNK--EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 K + SP+ T ++ +AD + KG F LA E G Sbjct: 336 SAKILDVRNSPDSVTARHILLNPATEGGVDKAMAKADSIKNLILKGGNFAALAVEFGTDG 395 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG+F++ + + +++F AK GD V++ +G I V K V Sbjct: 396 TKDNGGELGTFARGSMI-PAFENAVFD-AKPGDVF-VLNTQYGVHIIKVDAQKGMSKV-- 450 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 VK I ++ ++ ++E ++ Y + +F S + K + + D Sbjct: 451 --VKAAIIDK-SVSSSNETLRAAYSKASDFFGKANS-QNFAEEAKKAGLTVEHADNITPM 506 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 P +++ F + D L D Y+ ++ P LE+V Sbjct: 507 QGYLPNLETP--REVIKWAFKAEKGDLTDKVYEL-DNQYVIAKLTNIRPKGQLSLEDVKK 563 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 +++ A +++ K N + + K+ I + +G + I + Sbjct: 564 EIEPAVLNKVKATKLAQKLN----DALQGAKSIDQIAQKVGKTPKAEQNIVFANPILPGV 619 Query: 545 GYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKD 601 + + VF + + PIE V +VT+ + + D+ + Q + + Sbjct: 620 AQENKVVGTVFGLQPKQL-SKPIEGNQGVYVVQVTDFVNPPALDKVDQQKQQVRQQLRQR 678 Query: 602 LLDSVIAYLKSQYSVTVHD 620 + L + + + Sbjct: 679 ASNQSFQALLDKADIKDNR 697 >gi|315186551|gb|EFU20310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta thermophila DSM 6578] Length = 336 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 74/351 (21%) Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104 V ++VP ++ + Q+ G V+ E + L +++LD L+ L Q + Sbjct: 49 RVNGEEVPSKEVEREVQRYVAQY-QQYGMEVSPEEEQK--LREQVLDVLIGRLLLLQEAK 105 Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 +GL D +V +I + + + S + F + LA+ G E+E+ + ++ V Sbjct: 106 RMGLSVDQAQVDAQIEQ---YKLQSG--SEETFKNILAQAGYTEEEFREELSRAFLLQQV 160 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 V V S+ ++++ + + Sbjct: 161 VD---------------------------------EKVTKHLSVSDEEARAYYDENPEQF 187 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 PE R +IL + S +E +A Y + Sbjct: 188 EQPEQIRARHILIRLAPDA-----SKEEEEAAY-----------------------AKIH 219 Query: 285 EAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E + L +G F +LA+ + + LG F K + + ++ F+L + + V Sbjct: 220 EVQEKLNQGADFAELAKTYSEGPSAPNGGDLGFFGKGQMV-PAFEEAAFAL-EVNQVSDV 277 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +G + V++ + + SF+EVK + + K+SE + + L+ Sbjct: 278 VRTEYGLHLIQVTDRQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELK 328 Score = 41.9 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 9/135 (6%) Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + E ++E L G E+++ + P G + +P Sbjct: 206 ASKEEEEAAYAKIHEVQEKLNQGADFAELAKTYS----EGPSAPNGGDLGFFGKGQMVPA 261 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 E+ F + +++ V + +Q+ + A EEV +K+ K+ Sbjct: 262 FEEAAFAL-----EVNQVSDVVRTEYGLHLIQVTDRQEAGKASFEEVKDQLKEMLLQQKS 316 Query: 496 AEEVSSKANQLVLEY 510 +E +++ +L + Sbjct: 317 SEAINALVEELKGKA 331 >gi|256419787|ref|YP_003120440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga pinensis DSM 2588] gi|256034695|gb|ACU58239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga pinensis DSM 2588] Length = 702 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 105/726 (14%), Positives = 215/726 (29%), Gaps = 136/726 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPF----LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 ++ IR + + + + V F +G + + S+TV V ++ F+ + Sbjct: 4 IQKIRDKYAVVIV-VVICLAIVSFLLQDAFFGKNSLIRR---STTVGKVNGTELEFTEYQ 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K + G V + + +S L E +GL + Sbjct: 60 QMIKNAEDRMRMSNGAV---NEQITQQARESAWTKFLSDNILSAQYEKLGLAVTEEEIKD 116 Query: 118 EIAR-------SPLFHGK-DNKFSHDVFVSRLA----------REGINEKEYIDHYTKML 159 + + F + KF LA R G+ + ++ + Sbjct: 117 QFTGKNPSPIITQQFTDEKTGKFDRARMQQVLASISQDKTGQMRAGL--LQLEEYIAQSR 174 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFE 218 + + + L ++ + + S+ Y+ + + S++ L + Sbjct: 175 VSEKYLSLIKQAVYYPKWLAEKQIQDNAQTASISYVSVPYASIADSTVKVSDSELNSFIN 234 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKI---------------EISNDELQAE------- 256 +K+ ++ E +++ Y+ F+V ISN+++ A Sbjct: 235 SHKELFKVEESRKVDYLAFNVIPSAADTAATLKVLMDAKQELDTISNNDIAAFINRNSDL 294 Query: 257 ---------------------------------------YEKNKEKYFSPEIRTVEQLVF 277 Y K ++ P+ V ++ Sbjct: 295 PYYDSYISKSALMVPQKDTLVTLPVGAVFGPYYDNNLIVYAKMIDRKTLPDSVKVRHILV 354 Query: 278 PNQ-------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIP 321 Q D +++K G F L E+ + G + Sbjct: 355 ATQNQQGGGLPDSLAKARIDSIERAVKGGADFKALVEQYTDDVRSKPTGGEYDVTPSTDF 414 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQMRITK 379 D F+L K V+ + GY + V K S K ++ +K Sbjct: 415 LKEFKD--FALEKGKGAIGVVKTAAGYHLIEVLEQKNIGSAVKLAYLAKPVSPSRETDSK 472 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A + E + + ++ E K ++ +L +DF + I +L Sbjct: 473 AYAEANEFASKNRDAKTFEKTIQE-KGLNKRIADNLRPMDFV--------IPGIGQAREL 523 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + D + V D +Y+ + LE+V V+ + + K Sbjct: 524 VRWAYDSDKGAVSN--VFTFDNTYVVAVLTTVRAEGTAPLEDVRPSVEAEVRKQK----- 576 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPV 557 KA Q++ E K + D+ K + I G++ + F+ Sbjct: 577 --KAAQII-EKIKSPASLADVSKATNQPEQKADGIGFGTPFVASMGFEPRVVGAAFNKAW 633 Query: 558 EMVK-CFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYS 615 K PIE V KV + + G + +S Q M L + LK Sbjct: 634 GTAKVSAPIEGNAGVYVLKVDSYQPGQGGQDPASVSRAYEQSMLSALDGQLFTVLKKLSK 693 Query: 616 VTVHDN 621 + + + Sbjct: 694 IEDNRS 699 >gi|296131722|ref|YP_003638969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR] gi|296030300|gb|ADG81068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens JR] Length = 352 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 123/392 (31%), Gaps = 85/392 (21%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI + L + F + + G+ TV V +K+ + Q+ G Sbjct: 6 KILGLALILVFAVV------VAGCGAKTVAEVNGEKITQEQLDKRVNKMKLAYEQQ-GAS 58 Query: 75 VNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 E+ + + + K+ LD ++ + Q E G+ V F +F Sbjct: 59 FEGEQGKQMLEAIKKQTLDQMIDQLLIKQAAEKEGVAPSDAEVQKR------FDEIKKRF 112 Query: 133 SHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 + F L E+E ++ + + Sbjct: 113 KSEKEFEDALKNYNYTEEELKEYIAQQAMTDALFQKVT---------------------- 150 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + +++E+ KD+++ PE + +IL +K+ Sbjct: 151 ------------KDVKVTEEDMKKYYEERKDSFKEPEKIKARHILIKFDTANEKVG---- 194 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 + +K A+E L G F +LA+E+ + + Sbjct: 195 ----------------------RKEEEAKKMAEELIAKLNNGADFAELAKEKSEDPGSKN 232 Query: 312 LGSFSKEYI---------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 G K+ + D+ F+L K + FGY I V + KP Sbjct: 233 DGGLLKDPMGSDYFARGVMVKEFDDAAFALKKGEITKKPVKTQFGYHIIKVEDKKPEKQK 292 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +++E K+ I + T+ E + + L++ Sbjct: 293 TYEEAKEQIKRDLPNTRKQEVFNKYIEGLKQK 324 >gi|237750031|ref|ZP_04580511.1| WbnF [Helicobacter bilis ATCC 43879] gi|229374442|gb|EEO24833.1| WbnF [Helicobacter bilis ATCC 43879] Length = 543 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 161/426 (37%), Gaps = 43/426 (10%) Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 MLE ++K + V ++ L ++F + WG FS S +V VG + + Sbjct: 1 MLEWMQKHKKYLVITVWVSALALVFASMVEWGGGG--FSAVSSDSVAKVGDIYISRQEYQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + +++ + V + + ++++ LV L+ +DIG+ + Sbjct: 59 RKYNEIYDNVAEYMRQVGLPDDGKPMPEIEQEAFRILVQEKLLEMLAKDIGVSITSNEIL 118 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 + +P F + F+ + + L N +Y K L + + + + Sbjct: 119 EALLNTPEFQDATHTFNKEQYEKLLQANRWNTADYEAFVAKALLQEKMQNFPLAPVSTLE 178 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + + + ++ A+ +++ + ++E+ K+ Y P +I+Y+ Sbjct: 179 TNAFMSAGKIKDVAELRLLHKDSVLKNAVLQTADSEIRSYWERNKEKYYKPASYKIAYMA 238 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---------DEAF 287 D+ +I + L+ Y+ N+ KY + + V + ++A Sbjct: 239 LDM----GEINTNRAMLEKFYKDNERKYKNLTFEQALEEVEADYRKAVLGFASSYMATIS 294 Query: 288 QSLKKGKKFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSI------FSL-------- 332 +++ + K +Q+ ++ S+ K + D+ + D +SL Sbjct: 295 KNIAENNKDLQIKTSNVITTMESQSIALLQKHFDGDLDIKDIALQDIPLYSLQLNDDGSD 354 Query: 333 ---------AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + KG P+ + ++I +++ P +SF+ K+ + + K +++ Sbjct: 355 HSALITAVSSGKGLLAPLEYSKDHWIIPYITEKIPKQALSFELAKELASRDLMAEKQNDE 414 Query: 384 VKEDYK 389 K+ Sbjct: 415 FKKMAY 420 >gi|167627763|ref|YP_001678263.1| hypothetical protein Fphi_1536 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597764|gb|ABZ87762.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 477 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 74/479 (15%), Positives = 170/479 (35%), Gaps = 49/479 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S S V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIIIISISFIFVISGMTFFFTNIGSSRSYVAKVGDNEIGLQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + +LD +++ + + + + I Sbjct: 61 AQN-----------------ATTESQKRAVLDQMINQYLILADAQRHNIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 +P+F KD KFS D + G +N ++ + T + + ++ Sbjct: 104 FTNPIFFDKDGKFSADKLKQVVEYIGGMN--RLEQILSQNIQATMIPKTIADTVITTDYE 161 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q Y N+ ++Y+ L+ + PS L ++ +K++Y P K ISY + Sbjct: 162 KKQLASIYLVNKKIEYLKLSPVDFQSQVKPSQQDLESYYNAHKNDYINPAQKNISYFIIS 221 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKEADEAFQSLKKGKK-- 295 + K I+NDELQ YE ++E + + + A E F + + Sbjct: 222 KEDFVSKNNINNDELQEYYETHRELFKDFDNNTKASIQKIIQNRRALEQFNNYSQNIDSV 281 Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +L + GK+ + + + +L ++ F + + + + ++ V Sbjct: 282 KFAELEKTLGKA---KTASIVNNDESTISALTNAQFFVDNDKYSSIPLA-NNELLVYQVD 337 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + +VK ++ K+ + E ++L +D++ +K+ Sbjct: 338 KSQQASQQKLADVKDKVSKAFVAQKSQQLAIEKSQKL---------LDDLVSNKKVSISF 388 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + + KE +F + ++ ++ +G ++ + P Sbjct: 389 KQATVDSDSKLFSKEFNDY--------VMFNTN---NQYNSYQSDNGDIYIYKVTKVEP 436 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 87/252 (34%), Gaps = 33/252 (13%) Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 K I ++ +A E+ + + + + + + + ++ + Sbjct: 255 KASIQKIIQNRRALEQFNNYSQNI-DSVKFAELEKTLGKAKTASIVNNDESTIS------ 307 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 L F D+ K ++ L + + Q+ +S A +KL +V V Sbjct: 308 ----------ALTNAQFFVDN--DKYSSIPLANNELLVYQVDKSQQASQQKLADVKDKVS 355 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K + K+ + K+ +L+ + K + S +D+++K F + Sbjct: 356 KAFVAQKSQQLAIEKSQKLLDDLVSN--------KKVSISFKQAT----VDSDSKLFSKE 403 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 V + +NG Y ++KVT + + S + ++ L+ + Sbjct: 404 FNDYVMFNTNNQYNSYQSDNGDIY-IYKVTKVEPLDSKNAK-LPSQVLNATKEEELNFYL 461 Query: 608 AYLKSQYSVTVH 619 +K + V V+ Sbjct: 462 QVVKQEVPVKVN 473 >gi|302337922|ref|YP_003803128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] gi|301635107|gb|ADK80534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] Length = 357 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 123/370 (33%), Gaps = 76/370 (20%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 S S V +P + + ++ + L ++L++L+ Sbjct: 56 ASPSDNAAIVNGVAIPLDRYQQQLSVIQQQYLMQ---GISVPEEQMAELKGQVLESLIDQ 112 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155 L Q + G EAD +V ++ + +F S + + LA++GI+E++++ Sbjct: 113 ELLAQEAKGQGYEADQTKVDQQLQQIK------GQFPSEEQYYQALAQQGISEQDFLAEL 166 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K L V + + Sbjct: 167 KKSLVVQQFVS---------------------------------DRFASQVAVTEEDSKT 193 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ + PE R S+ILF V E ++ Sbjct: 194 YYDDNPSYFVQPERVRASHILFSVAEDASDQDV--------------------------- 226 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332 + +A+ A + K G++F LA E + LG F + + D+ FS+ Sbjct: 227 -AAAKTKAESALERYKNGEEFSDLARELSEGPSASQGGDLGFFGRNQMVKP-FEDAAFSM 284 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G+ + + FG+ + ++ T+ F +VK I++ + + E VK + Sbjct: 285 -KVGEVSDPVRTKFGFHLIRLTARNEKGTLPFDQVKPQISDHLYKLRLGELVKAFLDEQK 343 Query: 393 EFLALGTSMD 402 E + +D Sbjct: 344 EKSEINRLLD 353 >gi|241668327|ref|ZP_04755905.1| hypothetical protein FphipA2_06151 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876860|ref|ZP_05249570.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842881|gb|EET21295.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 477 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 73/479 (15%), Positives = 170/479 (35%), Gaps = 49/479 (10%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59 ML+ + I ++ + F+I G++ ++ S S V VG ++ F Sbjct: 1 MLQSFNDRLKGPFTWIIIISISFIFVISGMTFFFTNIGSSRSYVAKVGDNEIGLQQFQQY 60 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A + + +LD +++ + + + + I Sbjct: 61 AQN-----------------ATTESQKRAVLDQMINQYLILADAQRHNIVVSKLALQSAI 103 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 +P+F KD KFS D + G +N ++ + T + + ++ Sbjct: 104 FTNPMFFDKDGKFSADKLKQVVEYIGGMN--RLEQILSQNIQATMIPKTIADTVITTDYE 161 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q Y N+ ++Y+ L+ + P+ L ++ +K++Y P K ISY + Sbjct: 162 KKQLASIYLVNKKIEYLKLSPVDFQSQVKPNQQDLESYYNAHKNDYINPAQKNISYFIIS 221 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQKEADEAFQSLKKGKK-- 295 + K I+NDELQ YE ++E + + + A E F + + Sbjct: 222 KEDFMSKNNINNDELQEYYETHRELFKDFDNNTKASIQKIIQNRRALEQFNNYSQNIDSV 281 Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +L + GK+ + + + +L ++ F + + + + ++ V Sbjct: 282 KFAELEKTLGKA---KTASIVNNDESTISALTNAQFFVDNDKYSSIPLA-NNELLVYQVD 337 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + +VK ++ K+ + E ++L +D++ +K+ Sbjct: 338 KSQQASQQKLADVKDKVSKAFVAQKSQQLAIEKSQKL---------LDDLVSNKKVSISF 388 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + + KE +F + ++ ++ +G ++ + P Sbjct: 389 KQATVDSNSKLFSKEFNDY--------VMFNTN---NQYNSYQANNGDIYIYKVTKVEP 436 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 85/252 (33%), Gaps = 33/252 (13%) Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 K I ++ +A E+ + + + + + + + ++ + Sbjct: 255 KASIQKIIQNRRALEQFNNYSQNI-DSVKFAELEKTLGKAKTASIVNNDESTIS------ 307 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 L F D+ K ++ L + + Q+ +S A +KL +V V Sbjct: 308 ----------ALTNAQFFVDN--DKYSSIPLANNELLVYQVDKSQQASQQKLADVKDKVS 355 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K + K+ + K+ +L+ + K + S +D+ +K F + Sbjct: 356 KAFVAQKSQQLAIEKSQKLLDDLVSN--------KKVSISFKQAT----VDSNSKLFSKE 403 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 V + NG Y ++KVT + + S + ++ L+ + Sbjct: 404 FNDYVMFNTNNQYNSYQANNGDIY-IYKVTKVEPLDSKNAK-LPSQVLNATKEEELNFYL 461 Query: 608 AYLKSQYSVTVH 619 +K + V V+ Sbjct: 462 QVVKQEVPVKVN 473 >gi|149277612|ref|ZP_01883753.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39] gi|149231845|gb|EDM37223.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39] Length = 695 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 95/717 (13%), Positives = 220/717 (30%), Gaps = 124/717 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-----FSVSGSSTVVSVGRQKVPFSSF 56 + +R + I + + + + + DA+ F V S+ + + F Sbjct: 1 MTFLRNRA----GYILIGAIGFAIVAFLVGDAINVGKPFWAESQKVVGSIDGEDINIDEF 56 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +Q L Q+ G N E+ ++ +D ++ + V+ L + +GL ++ Sbjct: 57 GPKVEQSLAQFKQQYGGSGN-EQMSAMAVD-QVWNGEVANVLLGKEYSRLGLNVSGDELF 114 Query: 117 GEIAR-------SPLFHGK-DNKFSHDVFVSRLAREGINE------KEYIDHYTKMLSRT 162 + F + + ++ L ++ N K + Sbjct: 115 DLLQGKNPSPLIVQYFGNPQTGEVNRAEVLNSLKQQSKNPQLKQQWDLLQTEIEKQALQQ 174 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYK 221 + + + L + + + + Y+ L+ +P A P+ + + ++ + K Sbjct: 175 KYANLIRSSVYVTTLEANDEYQNRNKLANFRYVGLDYTSIPDANVKPTESDFSDFYNENK 234 Query: 222 DNYRAP------EYKRISYILFDVHEKEKKIEI--------------------SNDELQA 255 + P EY + K ++ S+ ++ Sbjct: 235 QRFNNPTETRSFEYVSFNISPTAADSAAIKAQVEKLAADFKAAPSDSLFAALNSDVKVPY 294 Query: 256 EYE----------------------------------KNKEKYFSPEIRTVEQLVFPNQK 281 Y K + FSP+ ++ K Sbjct: 295 TYVTKGKLDPAVDSAVFNLPAGSYYGPVLSGNSYKLVKVADTRFSPDSVKASHILIDAAK 354 Query: 282 -----EADEAFQSLK----KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSI 329 +A + SLK G F LA + S LG+FS+ + ++ Sbjct: 355 LGGVDKATKLADSLKTLVQNGANFATLAAQYSVDGSKDKGGELGTFSRGQMV-AEFENAA 413 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSN-IKPSFTVSFQEVKKDIA-NQMRITKASEKVKED 387 F+ K GD V+ FG + + + S V ++K +A + A +K Sbjct: 414 FN-GKAGDL-KVVTSQFGVHLIKIEKQVGSSKVVKLAYIEKSLAPSNKTKDAAYKKASNF 471 Query: 388 YKRLEEFLALGTSMDEISRREK-IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 +++ + E++++ V + + G + +L+ + Sbjct: 472 LAEVKD-----NNFAELAQKLGYTVGVADKITPTQGF------APGLANPRKLIKDAYAA 520 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 D A+ D +++ ++ LE+V D+ A++++ K Sbjct: 521 DKGDVLKEIYAM-DNAFVIARVTAVKAKGLLSLEDVKKDITPMVINAVKAKQLTEK---- 575 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFP 564 + + + + + LG + I + + + +F + P Sbjct: 576 INKALQGASTIDQVAQKLGKPATSVPNIVFANPIIPGAAQENKLVGAIFGSAKGKL-SKP 634 Query: 565 IENGLSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 ++ VF V S P+ K + Q + L S L+ + + + Sbjct: 635 VDGQQGVYVFVVDGFSNPAPLANTYKQKEAMMQASGQRTLGSAFQALQDKADIKDNR 691 >gi|195953257|ref|YP_002121547.1| hypothetical protein HY04AAS1_0882 [Hydrogenobaculum sp. Y04AAS1] gi|195932869|gb|ACG57569.1| conserved hypothetical protein [Hydrogenobaculum sp. Y04AAS1] Length = 436 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 126/397 (31%), Gaps = 81/397 (20%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFI 57 M E IRK T+ I ++ F +W + + S + + + + F Sbjct: 1 MFEFIRKHKETFA--ILSGIVTAAFFLWNFAAGNITSLFHSSENCIAKANGDCISIADFR 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + + + L ++IL++L+ L + + G V Sbjct: 59 R--------------VAMGTNQQMTPILKQEILNSLIDDDLLYEQAKKEGFLVSDKEVAD 104 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 I++ P F D KF+ D + + LA G + Y + K L+ S++ Sbjct: 105 IISQDPSFQ-VDGKFNFDRYKAVLAEAGYTPETYESYIKKQLTIQKYTLFVTNASYVSDI 163 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L+ A S +++ V P+ + ++ K+KD ++ I Y Sbjct: 164 ELNAANMINNTLLSGKAYIIDPNSVNINYTPTEQEIEDYYNKHKDEFKIVNPSSIIYWET 223 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++ +A E + +LK GK Sbjct: 224 T----------------------------------------DKNKAREIYMALKSGK--- 240 Query: 298 QLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY--VIAHVS 354 I G + E + + +L + PV+ G+ G I Sbjct: 241 ------------IPPGFKAFDEKTMSKTFGAVVKALNPQN---PVLVGNVGNNIYIFTYQ 285 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + K + + + K + + + K +K+ K + Sbjct: 286 STKNAAIMPLSQAKNQVIQDLIMEKKILALKDFAKNI 322 Score = 57.3 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 95/252 (37%), Gaps = 17/252 (6%) Query: 381 SEKVKEDYKRLEE--FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 +++++ Y + ++ + +S+ +K + ++ + +GK G + E+ Sbjct: 196 EQEIEDYYNKHKDEFKIVNPSSIIYWETTDKNKAREIYMALKSGKIPPG----FKAFDEK 251 Query: 439 LLFRVFGKD-DPLSKDHTVALPD--GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 + + FG L+ + V + + + + + A L + V +D K Sbjct: 252 TMSKTFGAVVKALNPQNPVLVGNVGNNIYIFTYQSTKNAAIMPLSQAKNQVIQDLIMEKK 311 Query: 496 AEEVSSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 + A + +K+ + + + N L + + + + + + F Sbjct: 312 ILALKDFAKNIYNNLKAKKPVSIKPVAFN-NLPLSKISTMVDIKSSDIVPMVTEKTPAFF 370 Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 GP + +G +YV+ +V + + Q ++ L + L++ +I L++ Sbjct: 371 GP------YVSASGSAYVIIEVDSRSIKNQQNPEQTFVQLISLKANVLMNYLIKDLRAHA 424 Query: 615 SVTVHDNLIQRY 626 + ++ +L Sbjct: 425 KIDINKSLYNNL 436 >gi|183179758|ref|ZP_02957969.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3] gi|183013169|gb|EDT88469.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3] Length = 157 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 6/156 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R+ + KI L ++ + F+ G+ + L S G++ VG ++ F ++ Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLIS-GGNNAAAKVGNAEISRGDFEQAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + ++G + ++ A K +LD +V+ L+Q +GL +V Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRLSDEQVRQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 I P F + F + RL + + Y D Sbjct: 120 LILEIPQFQSQ-GVFDSAAY-QRLCVAQLTPEMYAD 153 >gi|332798185|ref|YP_004459684.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter sp. Re1] gi|332695920|gb|AEE90377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter sp. Re1] Length = 320 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 55/389 (14%), Positives = 121/389 (31%), Gaps = 95/389 (24%) Query: 14 AKIFLVVLFVPFLIWG------LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 KI +++L + G + + G + V + + S + Q + Sbjct: 4 IKISILLLICVIAMAGCQNVEKVETQGKIIDGKEVIAKVNDELILKSDYDRQVLQVKSAL 63 Query: 68 SQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 G +++ + + +K+L+++++ + Q E + I+ + Sbjct: 64 EAN-GQDFSTDEGKKVLKEIREKVLESMINDQLILQQAEKDNITLGEKEFKQAISDLEQY 122 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 HG + L ++ ++ + + L Sbjct: 123 HGGKDALDK-----YLEQQELDRSSFEKLVKEQLVINQFKEKLTS--------------- 162 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 ++ + +++E K + P Sbjct: 163 -------------------DIKITDEEVKKFYEDNKTMFELP------------------ 185 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +PEIR ++ + EA + +K G F LA++ K Sbjct: 186 --------------------APEIR-ASHILVDTENEAKKILAEIKAGGDFAALAKDYSK 224 Query: 306 SLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 LG FSK + D + F+L K G+ + V+ +FGY I V+ + + Sbjct: 225 DPGSKELGGDLGYFSKGKM-DPEFEKAAFAL-KPGEISDVVKTTFGYHIIKVTGER--TS 280 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 +SF + K I + + +K E+ + Sbjct: 281 LSFDDAKDYIKSNLENSKKEEEFNKYLDE 309 >gi|315648234|ref|ZP_07901335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] gi|315276880|gb|EFU40223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] Length = 399 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 59/416 (14%), Positives = 135/416 (32%), Gaps = 126/416 (30%) Query: 7 KASRTWV-------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 S+ W+ A + +V++ PF SG+ V V K+ + N Sbjct: 90 NGSKGWMIASLVLAAALIVVLIVPPFA---------KGSGNEAVAKVNDVKITKDTLYN- 139 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 E + G K+ ++++++ + Q + + V E+ Sbjct: 140 ------------------ELVEAGG--KQTVNSMITEELIKQELAKQSITVTDAEVNEEV 179 Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 F S D F L + G+ ++ + ++G Sbjct: 180 DALKA------SFPSEDQFNMALQQSGMTLEDLKGQTKTQVELKKLMG------------ 221 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ + +++ K+++ PE R S Sbjct: 222 -------------------------DKIKVTDEEIKTIYDQNKESFATPEQVRAS----- 251 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 ++ ++EADE + LK G F Sbjct: 252 -----------------------------------HILVETKEEADEIVKQLKDGADFAA 276 Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A+E+ + + L F + + D + ++ F L KK + + + SFGY I +++ Sbjct: 277 IAKEKNQDATKDTGGDLDFFGRGEM-DPAFEEAAFKL-KKDEISDPVKSSFGYHIIKLTD 334 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 K + + ++ K +I Q+ K ++ + L++ + +++E++ + Sbjct: 335 RKEATNPTLEDKKVEIRKQLENQKVYQESSAYIQELKDKATITNTLEEVAPADPAT 390 >gi|325294382|ref|YP_004280896.1| hypothetical protein Dester_0180 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064830|gb|ADY72837.1| hypothetical protein Dester_0180 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 440 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 124/397 (31%), Gaps = 70/397 (17%) Query: 1 MLEIIRKASRTW------VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54 ML IRK R + VA F+ + FL+WG + S V +V + + Sbjct: 1 MLSKIRKNMRAFSLPLWIVAASFVGTI---FLVWGKGS--LTGPSGSEVATVNGEPIDLI 55 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 F + Q + Q+ G + + L L++ + + + G++ Sbjct: 56 EFNREYNQLTNQLQQQFGENY-RKLFPDKEIKIAALQRLINRKLVLEEAKKEGIQVSDWA 114 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I P KD KFS +++ L ++ K + D + L ++ + Sbjct: 115 VAKRIRSFPFLQ-KDGKFSEELYKEFLKANRLSPKVFEDKIREDLLIEKIMAVIDKAPSV 173 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + L R F R Y + + S L +++ + ++ E Y Sbjct: 174 TTFELQNLYRKTFGKREFKYKLFLKKDY--KPSISEKELREFYRENISQFK--EKTGKKY 229 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 L + K + S + Y L K + Sbjct: 230 FLI---KIPKSQKDSEGLARKVYN----------------------------LAKLGKVE 258 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 K L F + + D L F G ++ ++ YV Sbjct: 259 K----------------LNDFHPQQVNDKKLISEKFKDKNFGFYSD--ESNY-YVFFKKE 299 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K F+ VKKDI ++ KA E K+ + Sbjct: 300 GEKA---KPFETVKKDIEKTLKEKKAVELAKKSAEEF 333 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 87/263 (33%), Gaps = 28/263 (10%) Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV---SIDLPLVDFAGK 423 +KKD + + E +E+ + +E + +I + +K + + + GK Sbjct: 197 LKKDYKPSISEKELREFYRENISQFKEKTGKKYFLIKIPKSQKDSEGLARKVYNLAKLGK 256 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 K + ++ L KD + Y++ + + + + E V Sbjct: 257 VEKLNDFHPQQVNDKKLISEKFKDKNFGFYSDES---NYYVFFKKEG---EKAKPFETVK 310 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 D++K K K E A + + + + T ++R F Sbjct: 311 KDIEKTLKEKKAVELAKKSAEEFLKKGLE--------------PKEKTKPLDRDQFFEMF 356 Query: 544 FGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMN 599 + I +FS + NG +T+ + ++ +K ++ Sbjct: 357 KPINPQEIENIFSSKKGKRFLLVLTNGYGIF-EPITDLKVEKMEKEKIEKLKQFILDAKK 415 Query: 600 KDLLDSVIAYLKSQYSVTVHDNL 622 + + + L+ + ++ V++ Sbjct: 416 QSDYQNFLNLLRQKANIKVNEKF 438 >gi|289549224|ref|YP_003474212.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484] gi|289182841|gb|ADC90085.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484] Length = 444 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 68/409 (16%), Positives = 133/409 (32%), Gaps = 74/409 (18%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPF 53 M I++ + V + V F + + D L + V V + Sbjct: 1 MFSFIQRHRKFLVVTV----SVVSFAFFLWLFLAGSVQDILR--GKRACVAVVNGTCISL 54 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 ++ EL SQ + +++LD+L+ L Q ++G A Sbjct: 55 RD----YRMELLPYSQ-----FLKNEEMEGMIKEQVLDSLIVRELLYQKALEMGFVASDE 105 Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 V I P F + FS + L R + +Y ++ KMLS +V + Sbjct: 106 EVIDTIKSDPTFQ-EGGVFSASKYREVLERNNLEPAQYEEYLKKMLSIQKLVSFISNSVY 164 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 + Y + ++ V +P++A L ++ ++++ ++ PE + + Sbjct: 165 ITEKEKQANLLPYTTLLTGKLYLITPDSVKISYEPTDAELLNYYHQHREEFKRPEKRVVR 224 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 DE Y + K R V Q+EA+ Sbjct: 225 L----------WETPQRDEALNIYNQLKSSKVPTGYREV----ILPQQEAE--------- 261 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LS + ++ + +++ K GD +V+ + Sbjct: 262 -------------LSPVLRAEITRLSSKEP------YTVTKDGD---------KFVVLWL 293 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + +PS F VK I + K EK+++ + + L G +D Sbjct: 294 YSWEPSGYEDFNNVKDKIKQLLVQQKRLEKLQDVAQSAYKDLKEGKQID 342 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 14/217 (6%) Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL---SKDHTVALPDGSYMWVQI 468 ++++ + K G +P +E L V + + +TV ++ + + Sbjct: 234 ALNIYNQLKSSKVPTGYREVILPQQEAELSPVLRAEITRLSSKEPYTVTKDGDKFVVLWL 293 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 P+ V +K+ K E++ A + KEGK Sbjct: 294 YSWEPSGYEDFNNVKDKIKQLLVQQKRLEKLQDVAQSAYKDL-KEGKQIDYRYLAF---- 348 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 + I+++ + K D + + S + + I G Y V K+ + + +K Sbjct: 349 -SDTPISQLASLMKIPQEDLVKLLVS-KETVFGPYAIAQG--YAVLKIESKTTKSLDDKQ 404 Query: 589 K--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + I + + +L+ + LK + +T++ +LI Sbjct: 405 QKDLIKDILSLKTDSVLNYYLESLKKRAKITINRDLI 441 >gi|126662464|ref|ZP_01733463.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38] gi|126625843|gb|EAZ96532.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38] Length = 685 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 89/717 (12%), Positives = 222/717 (30%), Gaps = 134/717 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR+ R++ I + + F++ + + +G++ V SV + F+ + Sbjct: 4 LSKIRQ--RSFFLIIIIALALFSFVLADVIQSGTFGTGANDVGSVNGNDIEAQQFMQNV- 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +K G ++ +A + ++++ L + + +GL+ ++ I Sbjct: 61 ----AMIEKQGQGTSTTQAMNSAWEQEV-----RKIILTEEFDKLGLKIGSEQLINVIKQ 111 Query: 120 ----ARSPLFHGKDNKFSHDVFVSRL--------AREGINEKEYIDHYTKMLSRTDVVGM 167 A++P F +F + F L + + KE+ + K M Sbjct: 112 NPNLAQNPQFLNAAGQFDENKFKESLKGIKNAPDQTQWLQWKEFEKNIEKYAVEQMYNTM 171 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRA 226 G+ + + DY+ + V S++ + + +K Y++ Sbjct: 172 IKSGVYTTKAEGKFQYTLENDKVDFDYVTVAFSTVNDDEVKVSDSEIIDFMKKSPKKYKS 231 Query: 227 PEYKRISYILFDVHEKEKKIE-----------------------------------ISND 251 I ++L + ++ + ++ Sbjct: 232 DNTSSIEFVLVENKPSKEDEQAMLSSIGDVKVKFDSVVNVGEFVNANSDIKFDSTYVTKK 291 Query: 252 ELQAEYEKNKEKY-----------------------FSPEIRTVEQLVFP---------- 278 +L +Y++ + ++ Sbjct: 292 DLPLDYQEQLFNLPVGGVYGPYVFNGHQCISRMISKKANASAKASHILLAYKGAPQSSAT 351 Query: 279 -NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADS 328 ++EA +L + F LA + G + + D Sbjct: 352 RTKEEAQALANNLLAQAKANPENFAVLAMANSDDPGSKNNGGEYDNITPGQMV-PQFNDF 410 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKED 387 +F+ G V+ +G+ + V + S + +A +++ + A+ + + Sbjct: 411 VFN-NVIGSI-GVVETDYGFHVIKVMDKYNSVLM------GTVAQKIQPSDATIDAIYTK 462 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +LE + I+++ + + P + G D + V + + +++ F KD Sbjct: 463 ASQLEADANENSDFAAIAKKAGLEVV--PATNLKGSD---EYVQGVGSQREIVRWSFNKD 517 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 + +P G ++ ++K+ + ++ V+ K K AE + K N Sbjct: 518 TEIGDVKRFEVPQG-FVIAKLKDKNESGLLPIDIARQSVEVLIKNQKKAEIIKKKMN--- 573 Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMV-KCFP 564 G + + + GAS+ + G + I + F + Sbjct: 574 ------GTSLEAVAQKSGASVQPATGVTLKTPNLPNIGNEPKVIGKAFGLAAGKTSEIIE 627 Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 +G+ + K Y +Q + + +A LK + + + Sbjct: 628 GNSGMFMIRAKAVTKAPEVPSYATYITQYRSQNQSYASSMAYMA-LKEKAEIKDNRA 683 >gi|218515978|ref|ZP_03512818.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli 8C-3] Length = 212 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 7/211 (3%) Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 D G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR Sbjct: 1 DATGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREVTPDRDRP 59 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 + EV +DW + E++ KA++L E K G DI LG ++ + + I R Sbjct: 60 IAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-S 117 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYL 594 ++ G G+ FSGPV+ V + + ++ KVT P + +D ++ + Sbjct: 118 TDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAM 177 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 D+LD ++ L++QY V+ L ++ Sbjct: 178 ANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 208 Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 9/205 (4%) Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIH-GSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 G K+ L F + G P + G+ GYV +V + P EV++ Sbjct: 9 GKEVKDIPAKQQLLGEAFK-TEVGVDAPPLPIGNDGYVWFNVREVTPDRDRPIAEVREKA 67 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV----KG 427 + ++ + L+ GT++ +I+ I + + D G Sbjct: 68 VEDWTAEQQKAELAKKADELKAEAQKGTALADIATPLGIAVESKSGITRSTDDPVLGRAG 127 Query: 428 KEVAAIPYKEQLLFRVFGKDDP---LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 + A + + V + + P G + + + + +++L Sbjct: 128 VKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAMANAAGDDILD 187 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLE 509 + +T A+ + A Q Sbjct: 188 QMVNLLQTQYGAQVNQTLAEQTAAR 212 >gi|20808913|ref|NP_624084.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter tengcongensis MB4] gi|46396955|sp|Q8R760|PRSA_THETN RecName: Full=Foldase protein prsA; Flags: Precursor gi|20517573|gb|AAM25688.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter tengcongensis MB4] Length = 306 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 117/387 (30%) Query: 19 VVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + LF+ + G+S + V V +K+ + + ++Q I + Sbjct: 5 IALFLALIFVGVSLVSCSSKKEAVSGDVVAVVNGEKITNAEYQQIFEQVKEQIESAPTYT 64 Query: 75 VNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 + G + + +LD+LV+ L Q + + V E + F+ K Sbjct: 65 KDIWNQDYQGKKFLDFVKENVLDSLVAQKLLVQEAKKKNITVTDKEVEEEYNKEKQFNSK 124 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 K + + L ++ Sbjct: 125 VTK---------------------EQIREYLLIDKLL----------------------- 140 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 ++ L ++++++K+++ Sbjct: 141 -----------AEYTKDVKVTDEELKKYYDEHKESF------------------------ 165 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 E+ ++ ++K A++ +Q L KG+ F LA+E Sbjct: 166 -------------------EVMRARHILVADEKTAEDIYQRLMKGEDFAALAKEYSIDTA 206 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F + ++ FSL K G+ + + +GY I I F Sbjct: 207 TKDNGGDLGEFPHGVMV-PEFEEAAFSL-KLGEISKPVKTQYGYHIIKSEGIT---VKPF 261 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRL 391 EVK I + + K ++ +KE Y L Sbjct: 262 DEVKGTIESYLLNDKKNKVIKEKYDEL 288 >gi|196228020|ref|ZP_03126887.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus Ellin428] gi|196227423|gb|EDY21926.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus Ellin428] Length = 507 Score = 147 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 69/540 (12%), Positives = 177/540 (32%), Gaps = 67/540 (12%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK--- 61 RK + + + V+ + F + SGS V + + + S + Sbjct: 6 FRKYQQAIMISVT-VLTIISFALLYGHTDALDRSGSGKVAVIYGKNISLPSAQRGVRKGD 64 Query: 62 --QELGMISQKIGFVVNSERARSVGLDKK------ILDNLVSGATLDQFIEDIGLEADHG 113 ++L + + +++ ++++ ++LV L +++G+ A Sbjct: 65 LCRQLAQMEAYQPKHPMMDLYQALAVNRQEARENFFFNSLV----LKHEADELGVSATED 120 Query: 114 RVWGEIARSPLFHGKDNKFSHDVF----VSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 ++ P F + + + + L G + + + V + Sbjct: 121 EIFAATQALPAFQ-TNGAYDSQKYIMIAQNVLPSMGFTTDDLSELIGDSIRFQKVKALLG 179 Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 + PS+ + + + + A + + +E+ K + E Sbjct: 180 TTVAPSDSEIRDSFTQLNQKTEASVVRFKLDDFLATTQVPEEDVKKLYEERKSTLKTDET 239 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-AFQ 288 +++ ++ F + +K + P + QK+A++ + Sbjct: 240 RKVRFVAFTLPTTDKPLT------------------GPARVKA---LTDLQKKAEDFSVA 278 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIH 343 K KF ++A + + + + F P+ + + + L K + V+ Sbjct: 279 MTDKNAKFDEVAAKYNEKVQESP--EFPASKPPEALESSSEIGAAAYKLTKDQPNSDVLE 336 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE----KVKEDYKRLEEFLALGT 399 GY + ++NI P ++++E K ++A+ ++ +A E K + ++EE + G Sbjct: 337 TPRGYYVLQLANITPPRPLAYEEAKANLADTLKHERAQEALNLKATDVRNKIEEAIKGGK 396 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + ++ + + D P + P +++ + G V Sbjct: 397 TFAAAAQELGVKAEDFPAFS------PKEPKMDQPNAMEVM-QATGDLHQGQVSPVVPSS 449 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 DGS + ++ ++E K AE + Q L+ + Sbjct: 450 DGSLIVYV------SKRLPIDEAKYKADKTQLADSLAEFQQTALFQQWLKLRRAAAQLES 503 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 10/240 (4%) Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + + + K+ E+F D+ ++ +++ + V + + K A+ ++ Sbjct: 263 KALTDLQKKAEDF--SVAMTDKNAKFDEVAAKYNEKVQESPEFPASKPPEALESSSEIGA 320 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + + P G Y +Q+ P R EE ++ K + E ++ Sbjct: 321 AAYKLTKDQPNSDVLETPRG-YYVLQLANITPPRPLAYEEAKANLADTLKHERAQEALNL 379 Query: 502 KANQL---VLEYSKEGKNFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGISQVFSGPV 557 KA + + E K GK F + LG + + ++ + + Sbjct: 380 KATDVRNKIEEAIKGGKTFAAAAQELGVKAEDFPAFSPKEPKMDQPNAMEVMQATGDLHQ 439 Query: 558 EMV-KCFPIENG--LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 V P +G + YV ++ + +K + L + L + ++ Sbjct: 440 GQVSPVVPSSDGSLIVYVSKRLPIDEAKYKADKTQLADSLAEFQQTALFQQWLKLRRAAA 499 >gi|253681295|ref|ZP_04862093.1| foldase protein PrsA [Clostridium botulinum D str. 1873] gi|253562533|gb|EES91984.1| foldase protein PrsA [Clostridium botulinum D str. 1873] Length = 348 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 133/409 (32%), Gaps = 84/409 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW- 60 ++ IRK VA L + + + + + + V VG +K+ + + Sbjct: 1 MKNIRK----LVATAVLCIFTMSAVGCSMIEKTPEAIKKTVVAKVGDRKITKGELDSHFG 56 Query: 61 -KQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116 K+ L Q+ G + + + + S L Q E + L + + Sbjct: 57 VKRYLDQFKQQYGENFEQNPQIKEQVKQIKIAVAKQIASQEALKQEAERLKLVPNDQELK 116 Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 EI ++ F + + + L G+ + ++ + + + Sbjct: 117 KEIDKKTEEFKKEQHIKDNKGLDEALKMSGLQKSDFENIIKDNIIIEKLQN--------- 167 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEYKR 231 + + + +++ K KDNY + P Sbjct: 168 -------------------------ELTKNIKVDDKEIEKYYNKNKDNYPKDPKNPTKIH 202 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +++I+ K++ D+ +A + E + L Sbjct: 203 VAHIIL-------KVKTPEDDAKA------------------------KDEIKSIKEELN 231 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG F LA++ + S LG+ + D ++ +L K G+ + + FG Sbjct: 232 KGADFAVLAKKYSQDGSKDNGGDLGTVPAINSKFDQDFMNAALTL-KDGEISDPVKTQFG 290 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 Y I + + + +F EVK + + K SE + +K +++ + Sbjct: 291 YHIIKMIKREEAPCKTFAEVKNQVKEDILQNKKSEVINNKFKEIQDKAS 339 >gi|261408078|ref|YP_003244319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] gi|261284541|gb|ACX66512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] Length = 390 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 53/406 (13%), Positives = 130/406 (32%), Gaps = 126/406 (31%) Query: 7 KASRTWV-------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 S+ W+ A + +V++ PF SG+ + V + + Sbjct: 81 NGSKGWMIASLVLAAALIVVLIVPPFA---------KGSGNEAIAKVNDVNITKDNLY-- 129 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + SVG K+ L+++++ + Q +++ + V E+ Sbjct: 130 ------------------DELVSVG-GKQTLNSMITEELIQQELKNKSITVTDADVNKEV 170 Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 F S + F L + G+ + + ++ Sbjct: 171 DALKA------SFPSEEQFNMALQQNGMTLDNLKEQTKTQVELKKLM------------- 211 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ + + +++ K+++ PE R Sbjct: 212 ------------------------ADKIKVTDEEVKEVYDQNKESFATPEQVR------- 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 ++ ++EA+ + LK+G F Sbjct: 241 ---------------------------------ASHILVETKEEAEAIVKQLKEGADFAT 267 Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A+E+ + + L F + + D + ++ F L KK + + + SFGY I V++ Sbjct: 268 IAKEKNQDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTD 325 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 K + + ++ K++I +Q+ K + + L++ + ++ Sbjct: 326 RKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATITNTL 371 Score = 40.7 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 96/298 (32%), Gaps = 32/298 (10%) Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-----KKDIANQMRITKASEK 383 +L P GS IA V+++ + + E+ K+ + + + ++ Sbjct: 94 AAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGGKQTLNSMITEELIQQE 153 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +K + + ++++ + P + ++ + KEQ +V Sbjct: 154 LKNKSITVTDA--------DVNKEVDALKASFPSEEQFNMALQQNGMTLDNLKEQTKTQV 205 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 K L D + ++KE V+ V+T EE Sbjct: 206 ELK--KLMADKIKVTDE------EVKEVYDQNKESFAT-PEQVRASHILVETKEEA---- 252 Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 + +++ KEG +F I K + F + + Sbjct: 253 -EAIVKQLKEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEI-SE 310 Query: 564 PIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P+++ Y + KVT+ + +K++ S L + I LK + ++T Sbjct: 311 PVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATIT 368 >gi|225850233|ref|YP_002730467.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1] gi|225646664|gb|ACO04850.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1] Length = 461 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 75/520 (14%), Positives = 169/520 (32%), Gaps = 79/520 (15%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD----ALFSVSGSSTVVSVGRQKVPFSSF 56 M I + + K V+ F G + + V +++ F Sbjct: 1 MFAKI---AESKWMK--FVLFITTFAFVGTAFVAIVIYKFAGNITGAAVVNGREISLQEF 55 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + V++ + D + L+ ++ L Q E G+ A V Sbjct: 56 YYQVNVIQNRLENQ---GVDTAPLKKEIYD-QALEAVIDRELLYQEAEKEGIAATKEEVK 111 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I F +D +FS D +++ L+ I+ + + + K LS + S+ Sbjct: 112 RAILDVEAFK-EDGRFSKDRYIALLSGMNISPQLFEEIVRKDLSAQHLFTFLDASFYLSD 170 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ S D++ + + + S +++EK+K Y E K + Sbjct: 171 EEINSYVYKQLSKLSGDFLYIKPQPL----KISEEEAKRYYEKHKSEYTGKEGKEVIIYR 226 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 D+ + ++ ++K A + F LKKG+ Sbjct: 227 IDIDKNNQE--------------------------------KSEKLAKDLFLRLKKGET- 253 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-----VIHGSFGYVIA 351 E + + + I + ++ + + K + +P + Y ++ Sbjct: 254 ----EIKNEDIKIIFKDVIYDDTDSISNIPEELKKKLK--EISPDKNIIFVKTDDAYYLS 307 Query: 352 HVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 I+ +++VK +I ++++ VKE Y+++ + G + + ++ Sbjct: 308 RF--IRAVKEPLPYEKVKDEIYSKLKEDYEKRAVKELYEKISKESDKG--IQSLMKKYDG 363 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + E L + K ++ + L DG + +I + Sbjct: 364 KLEKIK-----------DETVRDLIVRYGLTPEYMKLFIKDREGIIPLKDG-ILVYKIDK 411 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 P D + E+ V+ K K V ++L + Sbjct: 412 VTPPTDEESGELKKLVEPLLKNEKYNTLVQMYIDKLRKDA 451 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 11/153 (7%) Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 E+V ++ K V ++ E K + + K L Sbjct: 316 PLPYEKVKDEIYSKLKEDYEKRAVKELYEKISKESDKG---IQSLMKKYDGKLEKIKDET 372 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS--- 592 D ++ ++F + P+++G +V+K+ +E + Sbjct: 373 VRDLIVRYGLTPEYMKLFI--KDREGIIPLKDG--ILVYKIDKVTPPTDEESGELKKLVE 428 Query: 593 -YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 L L+ I L+ + ++ + + Sbjct: 429 PLLKNEKYNTLVQMYIDKLRKDAEIIRNERIFR 461 >gi|116748015|ref|YP_844702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] gi|116697079|gb|ABK16267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] Length = 353 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 121/354 (34%), Gaps = 76/354 (21%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + + K+ G + A+ + KK+LD LV L Q Sbjct: 61 VAVVNGTVITRAEYESETKR-FERQMAMSGQA--PDGAQVAEMKKKVLDGLVGREVLKQQ 117 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSR 161 +G++ D V EIA +F + D F L + E+ +T+ L Sbjct: 118 AAKLGVKVDPAEVDKEIATLKQ------RFPNEDEFKKALKNLNLTEESLKAQFTQDLGI 171 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 ++ V + + ++++ Sbjct: 172 RKMID---------------------------------EQVASKITITPEETKKFYDGNP 198 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + ++ PE R S++L V K + ++ Sbjct: 199 ELFKTPEMVRASHVLIKVDPKAGDAD----------------------------KAKAKE 230 Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 A + ++ G+ F ++A+E + L F + + + F+L K G Sbjct: 231 RITAAQKKVQAGEDFAKVAKEVSECPSAAKGGDLDFFQRGQMVGP-FEQAAFAL-KVGSV 288 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ FGY + V++ K + + + E+K IA ++ + ++++ + + L+ Sbjct: 289 SDIVETQFGYHVIKVTDKKEAGVMKYDEIKDRIAQHLKQDRVNQQLAKYIEELK 342 Score = 44.2 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 8/153 (5%) Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ---LVLEYSKEGKNFRDIGKNLGASLL 529 P + E V K + +KA + + + G++F + K + Sbjct: 198 PELFKTPEMVRASHVLIKVDPKAGDADKAKAKERITAAQKKVQAGEDFAKVAKEVSECPS 257 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 + + F+ V V +E Y V KVT+ K V + D+ Sbjct: 258 AAKGGDLDFFQRGQMVGPFEQAAFALKVGSVSDI-VETQFGYHVIKVTDKKEAGVMKYDE 316 Query: 590 FISYLTQMMNKDLLDS----VIAYLKSQYSVTV 618 + Q + +D ++ I LK+Q + + Sbjct: 317 IKDRIAQHLKQDRVNQQLAKYIEELKAQAKIEI 349 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 9/130 (6%) Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 K KE ++ + G ++++ + P G + + EQ Sbjct: 225 KAKAKERITAAQKKVQAGEDFAKVAKEVS----ECPSAAKGGDLDFFQRGQMVGPFEQAA 280 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F + + + Y +++ + A K +E+ + + K + ++++ Sbjct: 281 FAL-----KVGSVSDIVETQFGYHVIKVTDKKEAGVMKYDEIKDRIAQHLKQDRVNQQLA 335 Query: 501 SKANQLVLEY 510 +L + Sbjct: 336 KYIEELKAQA 345 >gi|323701603|ref|ZP_08113275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum nigrificans DSM 574] gi|323533376|gb|EGB23243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum nigrificans DSM 574] Length = 341 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 121/373 (32%), Gaps = 71/373 (19%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLV 94 + + V +V +++ + + Q+ G + S+ + + L+K +LD+L+ Sbjct: 24 SNNADVVATVNGKEITRAELDKQVNMTVEQYKQQ-GIDLTSKENKDMKAQLEKSVLDDLI 82 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + L Q E L V I K + F LA + E++ + Sbjct: 83 TKTLLMQEAERQKLTPSKEEVDKSIKDIKA---TFGK--EEDFKKALAEVKMTEQDVRED 137 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 T L+ +V ++ P+ A + Sbjct: 138 ITFRLTYQKLVDKVTADVKA---------------------------------PTEAEIA 164 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +++ ++KD + PE + +ILF K + + K + Sbjct: 165 KYYNEHKDQFGTPERLEVKHILFAFDGKVPNAPKRTEAEALQAAKLALAEIT-------- 216 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIF 330 +KG+ F +A E+ L G D + + Sbjct: 217 ----------------QKGRDFAAVAREKSDDLGTRENGGSYTVDKGAGTTDPAFEKAAA 260 Query: 331 SLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 +L K G+ T + ++GY + + I+P+ S EVK IA Q+ K + Sbjct: 261 AL-KPGEITKQPVKSAYGYHLIKLEKIEPATQKSLAEVKDQIAAQLESEAKQAKFSQFVD 319 Query: 390 RLEEFLALGTSMD 402 L++ + + Sbjct: 320 ELKKKAEIDNRLA 332 >gi|258513569|ref|YP_003189791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum acetoxidans DSM 771] gi|257777274|gb|ACV61168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum acetoxidans DSM 771] Length = 327 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 121/375 (32%), Gaps = 78/375 (20%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSG 96 ++ V +V +++ ++ G + + A+ + + +LD ++S Sbjct: 21 NTNVVATVNGEEITQQQLDKRVSIVKDYYEKQYGQKIEGQDAQKLIDNMKPGLLDEMISD 80 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155 Q +G + ++ +I G +F + + F + LA++ + EK+ Sbjct: 81 TLKRQEARKVGKDMTDQQIQEKID------GVKKQFPNEEAFKNFLAQQDLTEKD----M 130 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ML+ DVV + + P+ + + Sbjct: 131 AYMLNLQDVV------------------------------------LKDVKAPTEEEVQE 154 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K+ ++ E + +IL + V+ Sbjct: 155 YYDQNKEQFKTAEQYEVRHILISTDPDDAG-------------------------NVKHT 189 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSL 332 +K A + +K GK F LA E+ + L G +F K + +L Sbjct: 190 EAEAEKLAVQVLADIKNGKDFAALAREKSEDLGSKDNGGLYTFKKGDTV-PEFEKAALAL 248 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FGY I + + P+ SF EVK I Q+ K + L+ Sbjct: 249 KPGEYTREPVKTQFGYHIIKLEKLIPARDQSFAEVKDGIKQQLDQEAKKNKFNAYLEDLK 308 Query: 393 EFLALGTSMDEISRR 407 + + + E Sbjct: 309 KKAKITNKLAETGDN 323 Score = 41.5 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%) Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 VK E + K VL K GK+F + + L + + + + Sbjct: 185 NVKHTEAEAEKLAVQVLADIKNGKDFAALAREKSEDLGSKDNGGLYTFKKGDTVPEFEKA 244 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVI 607 + P++ Y + K+ + KD L Q K+ ++ + Sbjct: 245 ALALKPGEYTREPVKTQFGYHIIKLEKLIPARDQSFAEVKDGIKQQLDQEAKKNKFNAYL 304 Query: 608 AYLKSQYSVT 617 LK + +T Sbjct: 305 EDLKKKAKIT 314 >gi|255038469|ref|YP_003089090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter fermentans DSM 18053] gi|254951225|gb|ACT95925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter fermentans DSM 18053] Length = 705 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 83/716 (11%), Positives = 198/716 (27%), Gaps = 121/716 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSD------ALFSVSGSSTVVSVGRQKVPFSS 55 + IR+ S + + V+ + +++ + +L + + V + +++ Sbjct: 4 INKIREKSG-----VAVTVIAISLILFMVGGDLLGPNSLLGGNDNQIVGEIAGKEINIKD 58 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F + + G +N S L + + V + + +GLE + Sbjct: 59 FQSRVDGFRQNYEAQSGRSLNEGELAS--LRDQAWNQFVVDIAYKKQYDKLGLEVTDEEL 116 Query: 116 WGEIARS-------PLFHGKD-NKFSHDVFVSRLAR-------EGINEKEYIDHYTKMLS 160 + + + F +F + V+ L + + + + + + Sbjct: 117 YDMVQGNHISPSILQAFSDPTTGRFDKNAVVNYLKNLKTLPLEQQKSWENFEKSLREERT 176 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN---------------------- 198 R M ++ ++ Y+ + Sbjct: 177 RAKYENMLRLSTYTPKAQAEKEYVAQNTKANLRYLYVPYFSVVDTTIKVTDAQLEEYLSA 236 Query: 199 ------------NRHVPAIADPSNAVLTQWFEKYKD------------NYRA-----PEY 229 +V P+ + + K+ + A P Sbjct: 237 HKKEYKGTDTRSIEYVTFPVQPAKDDSAALYNEIKELARGLATAQSDSAFAAMNTDIPTP 296 Query: 230 KRISYILFDVHEKEKKIEI---------SNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277 SY KE Y+ + S ++ Sbjct: 297 INQSYATMSDQLKEAVKTFVPGGVYGPYREGNTYYIYKYGGTRSDSVSSAKASHILIRAE 356 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325 + +A+ +K G F LA + G + LG F Sbjct: 357 NQSDSAKTAARVKAEGILAQIKAGANFEALAATSSADPGSAQRGGDLGYFQNNGAMVKPF 416 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 +++FS + G ++ FG+ I V+ K + + K IA ++ Sbjct: 417 EEAVFSASAPGLIPRLVESQFGFHIIKVTAPKSNTLYRIATIGKTIAP---SQATRDEAY 473 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 + +E ++ K L L + + AI +++ F Sbjct: 474 RRADEFANTVKSREQFEEAVKKNKA----LVLANANRIPESATNINAIQNAREIVRWAFK 529 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +D S V + Y+ + A+D K+++ ++ + KA Q Sbjct: 530 EDTKPSTVSPVFETEEQYVVAVLTGKSDAKDVKVDDFRDELTTKVRNQI-------KAEQ 582 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQ----INRMDNENKFFGYDGISQVFSGPVEMVK 561 + + + DI K GA L + + + F + + F Sbjct: 583 ISAKLKGATGSLEDIAKKYGAGALVESASDISLATGFLTSAGFDPIALGKAFGLKAGQKS 642 Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +++ V + + + ++ + +TQ + + V ++ + Sbjct: 643 GVFTGENGVFIMELVNKTDAPKIADFTQYKTQVTQSLESRMSYLVNEAIRENAKIE 698 >gi|15606037|ref|NP_213414.1| hypothetical protein aq_592 [Aquifex aeolicus VF5] gi|2983223|gb|AAC06821.1| hypothetical protein aq_592 [Aquifex aeolicus VF5] Length = 437 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 156/443 (35%), Gaps = 73/443 (16%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M +I+K R +A I + + + FL W +SD ++G+ V +VG + + Sbjct: 1 MFGLIQKHKR--IAVIIVTLASLSFLFWMFSVSDVKQMLTGNPCVATVGDECITLRE--- 55 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ EL S + + A + L++L++ L +++G V Sbjct: 56 -YRFELLKYSNFLQDERTEKLA-----RRVALNSLITKEVLYLKAKELGWYVSDEEVVEV 109 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I F + KFS + + L R G+ EY + K L V+ G+ Sbjct: 110 IKNDENFK-EKGKFSVEKYRETLNRFGLTPAEYEEIVRKSLMAQRVLNFLREGVYVLPDE 168 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPS----------------------------- 209 LD KRFY ++ V +PS Sbjct: 169 LDIQKRFYSLRVEGKLYLIKPSDVKVDYEPSEEEIKEYYEKNKEKFKEEEKEVVYVWSLK 228 Query: 210 -NAVLTQWFEKYKD--------NY--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 + +++E K + P + + + + K + + + Y+ Sbjct: 229 DKEKVKEYYENLKKGSIPSGYTEFNENLPPKVKEAVKELNQENRIKVVRVGENYYLLYYK 288 Query: 259 KNKEKYFSP----EIRTVEQLVFPNQKE-----ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + + P + ++LV Q+E A E F++LK+GK+ + + S Sbjct: 289 GKENAGYKPLEEVKEEIKKELVAKKQREKLKEFAQEVFKNLKEGKE----VGVKPLAFSS 344 Query: 310 ISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 SL + + + L + +F K GY I V N K ++VK Sbjct: 345 ASLEEIQRILMVEQKDLLNLVFGKEK---VYGPYPSLAGYGILVVKNRKFEELKP-EQVK 400 Query: 369 KDIANQMRITKASEKVKEDYKRL 391 +I +++ K ++ ++L Sbjct: 401 -EIERELKDNKFNDLAGLFVEKL 422 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 7/150 (4%) Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 A + LEEV ++KK+ K E++ A + V + KEGK K L S + + Sbjct: 293 AGYKPLEEVKEEIKKELVAKKQREKLKEFAQE-VFKNLKEGK--EVGVKPLAFSSASLEE 349 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 I R+ + D ++ VF G ++ +P G +V K + ++ + Sbjct: 350 IQRILMVEQ---KDLLNLVF-GKEKVYGPYPSLAGYGILVVKNRKFEELKPEQVKEIERE 405 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 L DL + L +Y V V++ L Sbjct: 406 LKDNKFNDLAGLFVEKLIKEYGVKVNEQLA 435 >gi|304405097|ref|ZP_07386757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304345976|gb|EFM11810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 365 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 56/411 (13%), Positives = 133/411 (32%), Gaps = 102/411 (24%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 WV L+V+ + + + V SV + ++ Sbjct: 40 GWVVSAALLVILILVA----TLSYAGDDKGENVASVNGVAITEKQLYDA----------- 84 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 + + + + + LD+L++ ++Q ++ GL + E+ Sbjct: 85 LLLIKGGGQNGQQKMSEVTLDDLINVELMNQELQKQGLVVAEADIDKEL---DALKKAYG 141 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + LA+ G+ + K ++ Sbjct: 142 -LDDEKLKQTLAQSGMTVADLRPDLEKQAKLRKLLS------------------------ 176 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + A ++ + ++++ K+++ PE R Sbjct: 177 -------------SKATVTDKDIQDYYDQNKESFSTPEQVR------------------- 204 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-- 308 ++ ++EAD + LK G F +A+E+ Sbjct: 205 ---------------------ASHILVKTKEEADAILKQLKDGADFATIAKEKSLDTGTK 243 Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 L F K + D + + F L K G+ + + ++G+ I V++ K + + +F+E Sbjct: 244 DAGGDLNYFGKGQM-DPAFEKAAFEL-KVGETSQPVQSAYGFHIIKVTDHKQAASPTFEE 301 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 K+DI N + ++K +E + + L+ + S+ + ++E + + P Sbjct: 302 KKEDIKNILMMSKINELAQPFIEELKSKAKIENSLVKEDKQEGAAATEEPA 352 Score = 37.3 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 14/173 (8%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 Q+R + K KE+ + + L G I++ S+D D G + Sbjct: 201 EQVRASHILVKTKEEADAILKQLKDGADFATIAKE---KSLDTGTKDAGGDLNYFGKGQM 257 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 P E+ F + V G + +++ + A EE D+K Sbjct: 258 DPAFEKAAFEL----KVGETSQPVQSAYG-FHIIKVTDHKQAASPTFEEKKEDIKNILMM 312 Query: 493 VKTAEEVSSKANQLVLE------YSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 K E +L + KE K A+ + N Sbjct: 313 SKINELAQPFIEELKSKAKIENSLVKEDKQEGAAATEEPAASTPKEEATTTTN 365 >gi|329923149|ref|ZP_08278648.1| putative foldase protein PrsA [Paenibacillus sp. HGF5] gi|328941591|gb|EGG37877.1| putative foldase protein PrsA [Paenibacillus sp. HGF5] Length = 398 Score = 143 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 53/406 (13%), Positives = 129/406 (31%), Gaps = 126/406 (31%) Query: 7 KASRTWV-------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 S+ W+ A + +V++ PF SG+ + V + + Sbjct: 81 NGSKGWMIASLVLAAALIVVLIVPPFA---------KGSGNEAIAKVNDVNITKDNLY-- 129 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + SVG K+ L+++++ + Q +++ + V E+ Sbjct: 130 ------------------DELVSVG-GKQTLNSMITEELIQQELKNKSITVTDADVNKEV 170 Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 F S + F L + G+ + + ++ Sbjct: 171 DALKA------SFPSEEQFNMALQQNGMTLDNLKEQTKTQVELKKLM------------- 211 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + + +++ K+++ PE R Sbjct: 212 ------------------------ADKIKVTGEEVKEVYDQNKESFATPEQVR------- 240 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 ++ ++EA+ + LK+G F Sbjct: 241 ---------------------------------ASHILVETKEEAEAIVKQLKEGADFAT 267 Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A+E+ + + L F + + D + ++ F L KK + + + SFGY I V++ Sbjct: 268 IAKEKNQDATKDTGGDLNFFGRGEM-DPAFEEAAFKL-KKDEISEPVKSSFGYHIIKVTD 325 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 K + + ++ K++I +Q+ K + + L++ + ++ Sbjct: 326 RKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATITNTL 371 Score = 41.1 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 96/298 (32%), Gaps = 32/298 (10%) Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-----KKDIANQMRITKASEK 383 +L P GS IA V+++ + + E+ K+ + + + ++ Sbjct: 94 AAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGGKQTLNSMITEELIQQE 153 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +K + + ++++ + P + ++ + KEQ +V Sbjct: 154 LKNKSITVTDA--------DVNKEVDALKASFPSEEQFNMALQQNGMTLDNLKEQTKTQV 205 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 K L D + ++KE V+ V+T EE Sbjct: 206 ELK--KLMADKIKVTGE------EVKEVYDQNKESFAT-PEQVRASHILVETKEEA---- 252 Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 + +++ KEG +F I K + F + + Sbjct: 253 -EAIVKQLKEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEI-SE 310 Query: 564 PIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P+++ Y + KVT+ + +K++ S L + I LK + ++T Sbjct: 311 PVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATIT 368 >gi|188996999|ref|YP_001931250.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp. YO3AOP1] gi|188932066|gb|ACD66696.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp. YO3AOP1] Length = 460 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 62/496 (12%), Positives = 175/496 (35%), Gaps = 66/496 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58 M + I S++ I L + F+ + + + V V +++PF F Sbjct: 1 MFDKI---SQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEINGVAEVNGKEIPFYEFNY 57 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++ + + ++ + + K+++++L+ L Q E G+ A +V E Sbjct: 58 AYEMTARNMQMQ---NLDISNLKD-QIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNE 113 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + F + KF ++ + G+ + + K LS ++ + + + S+ Sbjct: 114 ILKISAFQ-VNGKFDKQTYLQIINSFGLTPDAFENILRKELSVNNLKTILLSTIYVSDEE 172 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ + S + ++ + + ++ +++E++K +Y A K I+ D Sbjct: 173 IETFTKKQLTRVSGEATIIKPN----TPEITEEMIKKFYEEHKKDYLAQTGKNITVYKID 228 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + Q+ A + F K G +Q Sbjct: 229 IQKLGDD--------------------------------KAQQLAKQLFTQAKSGN--LQ 254 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + + + + S + + + + SL K + Y I+ + + Sbjct: 255 SVPAEVEKVFEGDVFSNQEIQNLPKEIQEDVNSLNKDKKVS-FTKTQNEYYISVFNG-ES 312 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 ++ +++VK +I ++ + + +++ K T + ++ ++ K + Sbjct: 313 LKSIPYEQVKNEIKQKLERELSQKALQDMQKT--------TDITQLLKQNKTEKQTI--- 361 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + + V K + L ++ + + + + + ++ E + Sbjct: 362 ---SDNTIQELVVKFGIKREDLNKL--ANLKVGEISKPISTENGILIFKLTEIKEPDKSQ 416 Query: 479 LEEVLTDVKKDWKTVK 494 ++E + K+ K Sbjct: 417 VDETKRTILPFIKSQK 432 >gi|220932946|ref|YP_002509854.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168] gi|219994256|gb|ACL70859.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168] Length = 332 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 61/391 (15%), Positives = 123/391 (31%), Gaps = 84/391 (21%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ--KIGF 73 +FL + V + + + + V +++ S + + +I Q + Sbjct: 7 VFLFLALVLVISFSVLAEDKVEKTDNIAAVVDGKEITISEVD-EYARTRDVIMQLYQANG 65 Query: 74 VVNSERARSV-------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + K LD L++ L + ++ G+ + Sbjct: 66 EFTQLILSTEAGNELINEYRKLKLDELITRELLIKEAKNQGINVSKEEM----------- 114 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 +K ++ + INE++ + L++ + LDQ K + Sbjct: 115 ---DKIFNEQIEMVKQKNNINEEQ----LLQALNQQGIES------------LDQYKNLF 155 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 FE + D +++N + + + Sbjct: 156 FEQ-NGDLLLINK--------------------------------------LREKVMEDV 176 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG-- 304 + ++ Y+ NKE + ++ +KEA E L+ G F ++A+E Sbjct: 177 SVEESAVREYYDNNKENFKHGTQIKARHILVETEKEAREILNELENGADFGEMAKEYSTG 236 Query: 305 -KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S + LG F K + ++ F+L K G + + +GY I V + Sbjct: 237 PSSKNGGDLGYFGKGRMV-PEFEEAAFAL-KVGQISDPVKTQYGYHIIKVEDKVEEGITP 294 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 F EVK I N + K K L + Sbjct: 295 FDEVKDKIKNNLLQQKQQTAWNNFLKELRDK 325 >gi|225848384|ref|YP_002728547.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644127|gb|ACN99177.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense Az-Fu1] Length = 456 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 66/439 (15%), Positives = 157/439 (35%), Gaps = 76/439 (17%) Query: 18 LVVLFVPFLIWG---LSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 +V+ F ++ ++ +SG V +++P F +++ + + Sbjct: 13 IVLYITAFAFVATSIVAVIIYKLSGEIYGAAEVNGREIPMYEFNYTYEMIGRNLQNQ--- 69 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ + + K+ ++ L+ L Q E G+ A +V E+ P F + KF Sbjct: 70 DIDITPFKK-EIAKQAIETLIENELLYQEAEKEGIVATKEQVKEELLNIPAFQ-VNGKFD 127 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + ++ + G+ + + K ++ ++ + + + S+ ++ + S + Sbjct: 128 KNTYIQIINSLGLTPEGFESILQKQITVNNLRSILLSTLYVSDEEVETFTKKQLTRISGE 187 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK----------- 242 ++ + ++ ++ ++EK+K +Y E K++ D+++ Sbjct: 188 VTLIKPKE----PTITDQMIKDYYEKHKSDYTVKEGKKVEIYKIDINKLGQEKAEIIAKD 243 Query: 243 ----EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--- 293 K I+N E++ ++ + PE V Q V K+ +F G Sbjct: 244 LFTKAKTGNITNIPQEVEKIFDGEVYEDKKPE--NVPQDVLSLSKDKKVSFSKTNDGYYI 301 Query: 294 ----------KKFIQLAEEQGKSLSD-------------------ISLGSFSKEYIPDVS 324 K F ++ E + L +S K I D++ Sbjct: 302 GIYKGDVSQSKPFEEIKTEITEKLKRQEYQKVVDQLHKTTDITALLSNNPVEKNQISDMT 361 Query: 325 LAD-------SIFSLA-----KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 + + SL+ K G+ + I+ G +I +S + +E+KK I Sbjct: 362 IQEFVVKYGVKADSLSSITRLKVGETSKPINTEEGVLIFKLSQLTEPDKDKMEEMKKTIV 421 Query: 373 NQMRITKASEKVKEDYKRL 391 ++ K ++ K L Sbjct: 422 PMIKAQKFNDIYKMYVDNL 440 >gi|167629347|ref|YP_001679846.1| ppic-type ppiase domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167592087|gb|ABZ83835.1| ppic-type ppiase domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 338 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 56/360 (15%), Positives = 111/360 (30%), Gaps = 87/360 (24%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 SG + V SV + + S + +S+ G +S+ L+++ L++++ Sbjct: 24 SSGGNVVASVNGETISRSDLDKRINRYKEELSRSGGA--DSKEL-MANLERQELEHMIDE 80 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 Q + +E G+V E+A+ S F L R + E E Sbjct: 81 MLFTQEAKKRNIEVSDGQVAAELAKEKQ-QFP----SDAEFQEALKRYRLTEDELSGIIR 135 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L + S+A + ++ Sbjct: 136 TRLIFNGLYDAVTS----------------------------------DIQISDADVEKY 161 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + D ++ + S ++ Sbjct: 162 YRDNPDKFKQNRQVKAS----------------------------------------HIL 181 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSL 332 ++EA L++G F QLA ++ + LG F E + +D+ FS+ Sbjct: 182 LKTEEEAKAIIAELERGADFAQLAVQKSTDSTAAQNKGDLGYFQAEDMVK-EFSDAAFSM 240 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K + +FGY + V +IK + F EVK I + + E+ + + ++ Sbjct: 241 KKGETSRTPVKSNFGYHVIRVEDIKEARQQRFDEVKDQIRVDLGADRKQERFESWFADVK 300 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 82/254 (32%), Gaps = 24/254 (9%) Query: 268 EIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 E + +E ++ +EA + + G+ +LA+E+ + SD K Y Sbjct: 70 ERQELEHMIDEMLFTQEAKKRNIEVSDGQVAAELAKEKQQFPSDAEFQEALKRY------ 123 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN---QMRITKASE 382 + + + +I + + + +S +V+K + + + + + Sbjct: 124 ------RLTEDELSGIIRTRLIFNGLY-DAVTSDIQISDADVEKYYRDNPDKFKQNRQVK 176 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K EE A+ ++ + ++ A A ++ Sbjct: 177 ASHILLKTEEEAKAIIAELERGADFAQLAVQKSTDSTAAQNKGDLGYFQAEDMVKEFSDA 236 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE---- 498 F + V + Y +++++ AR ++ +EV ++ D + E Sbjct: 237 AFSMKKGETSRTPVK-SNFGYHVIRVEDIKEARQQRFDEVKDQIRVDLGADRKQERFESW 295 Query: 499 -VSSKANQLVLEYS 511 KA + Sbjct: 296 FADVKAQAKIERKL 309 >gi|251794480|ref|YP_003009211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] gi|247542106|gb|ACS99124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] Length = 392 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 121/401 (30%), Gaps = 113/401 (28%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 R + W+A ++ + + ++ +G V +V K+ Sbjct: 70 RSGGKAWIAVSAILAIVLIIVLI----KPPFGAGDKAVATVNGAKITKDKL-------YD 118 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + ++ G K LDN+++ +DQ D + V EI Sbjct: 119 SLVEQGG--------------KSTLDNMITTELIDQAAADAKVTVTEADVDKEIEN---L 161 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 F LA+ G+ + + ++ Sbjct: 162 KKSFGSEDE--FNQTLAQYGMTVDSLREDAEVQVKIRKILEP------------------ 201 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 ++ + +++ K + PE Sbjct: 202 -------------------QVKVTDDDIKAYYDANKASMSTPEQI--------------- 227 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 ++ ++EA++ + LK G F LA+E+ Sbjct: 228 -------------------------RASHILVATKEEAEDILKQLKAGADFATLAKEKST 262 Query: 306 SLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 L F K + + + D+ F+L KKG+ + V+ S+GY I ++ K + T Sbjct: 263 DTGTKDNGGDLNFFGKGSM-EPAFEDAAFAL-KKGELSGVVQTSYGYHIIKKTDEKAAVT 320 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + +E K+DI Q+ K SE L+ + ++D Sbjct: 321 PTLEEKKEDIKYQLVTQKVSELSSTWMADLKAKAKITNTLD 361 >gi|237756262|ref|ZP_04584821.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691581|gb|EEP60630.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium yellowstonense SS-5] Length = 460 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 71/459 (15%), Positives = 159/459 (34%), Gaps = 77/459 (16%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58 M + I S++ I L + F+ + + + V V +++PF F Sbjct: 1 MFDKI---SQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEINGVAEVNGKEIPFYEFNY 57 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++ + + ++ + + K+++++L+ L Q E G+ A +V E Sbjct: 58 AYEMTARNMQMQ---NLDISNLKD-QIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNE 113 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + F + KF +++ + G+ + + K LS ++ + + + S+ Sbjct: 114 ILKISAFQ-VNGKFDKQIYLQIINSFGLTPDAFENILKKELSVNNLKTILLSTIYVSDEE 172 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ + S + V+ + + ++ +++E++K +Y A K I+ D Sbjct: 173 IETFTKKQLTRVSGEATVIKPN----TPEITEEMIKKFYEEHKKDYSAQTGKNITVYKID 228 Query: 239 VHEKEKKIE-------------------------------ISNDELQAE----------Y 257 + + I SN E+Q Sbjct: 229 IQKLGDDIAQQLAKQLFTQAKSGNLQSVPAEVEKVFEGDVFSNQEIQNLPKEVQEDANSL 288 Query: 258 EKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLK------------KGKKFI 297 K+K+ F+ +F P ++ +E Q L+ K Sbjct: 289 NKDKKVSFTKAQNEYYISLFNGESLKSIPYEQVKNEIKQKLERELSQKALQDMQKTTDIT 348 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSN 355 QL ++ IS + + + + + LA K G+ + I G +I ++ Sbjct: 349 QLLKQNKTEKQTISDNTIQELVVKFGIKREDLNKLANLKVGEISKPISTENGILIFKLTE 408 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 IK E KK I ++ K ++ + L + Sbjct: 409 IKEPDKSQVDETKKTILPFIKSQKFNDVYQMYVDSLRKK 447 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 58/154 (37%), Gaps = 17/154 (11%) Query: 478 KLEEVLTDVKKDWKTVKTAEEVSS-KANQLVLEYSKEGKN-FRDIGKNLGASLLTTNQIN 535 E+V ++K+ + + + + + + + K+ K + I N L+ I Sbjct: 317 PYEQVKNEIKQKLERELSQKALQDMQKTTDITQLLKQNKTEKQTISDNTIQELVVKFGIK 376 Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFI 591 R D ++++ + V + PI ++FK+T K + K + Sbjct: 377 RED----------LNKLANLKVGEI-SKPISTENGILIFKLTEIKEPDKSQVDETKKTIL 425 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ D+ + L+ + + ++ +++ Sbjct: 426 PFIKSQKFNDVYQMYVDSLRKKAKIKINKRVLEN 459 >gi|300857299|ref|YP_003782283.1| foldase protein [Clostridium ljungdahlii DSM 13528] gi|300437414|gb|ADK17181.1| foldase protein precursor [Clostridium ljungdahlii DSM 13528] Length = 341 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 57/394 (14%), Positives = 122/394 (30%), Gaps = 79/394 (20%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK--QEL 64 K + VA F+ V + + +STV +V +K+ Q L Sbjct: 2 KNIKRLVAAAFITVFAFSTAGCNMIEKTPEAIANSTVATVNGEKITRGDLDKDPNTIQLL 61 Query: 65 GMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120 Q+ G + + ++ILDN+++ ++Q +++ L D ++ ++ Sbjct: 62 SQAKQQYGSDYAKNDEATSAIKTQKEQILDNMITTKVIEQKAKELKLLPDESKLKSDMDK 121 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + ++ K F + L +G E+ + + L + + S Sbjct: 122 KIDDIKKQNFKGDTSQFDAALKAQGFTEESFKTMFLAQLKTQAIETNISNYLAKS----- 176 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 ++ + ++ KD Y Sbjct: 177 -------------------------VKVTDKQIKDYYNANKDKYT--------------- 196 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 P+ + ++ + EA + L KG+ F ++A Sbjct: 197 ------------------------EQPDKMHLAHILVKTKDEAQKVKARLDKGEDFAKVA 232 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +E + + LG + + + K+G + + SFGY I Sbjct: 233 KEVSQDTATKDKGGDLGFVNYNDSGYDAQFMAGAKALKEGAISDPVQSSFGYHIIKCIKK 292 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + F +VK DI Q+ + S+ V + + Sbjct: 293 QEYPVKDFNKVKDDIKKQLESDQKSKLVSQKVQE 326 >gi|148262224|ref|YP_001228930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146395724|gb|ABQ24357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 310 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ F + E++ +IS+ ELQ Y KNK+K+ + E ++ + EA E + Sbjct: 112 KKRVVVEAFLKKKVEEEAKISDTELQDFYNKNKDKFKTGEQVKASHILVKTEPEAQEILK 171 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA++ + LG F K + ++F L K+G + V+ Sbjct: 172 QLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGAML-PDFEKAVFGL-KEGAISGVVKTK 229 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FGY I ++ +P+ F EVK + + K E K+ + L+ Sbjct: 230 FGYHIIKLTGKRPAGIRPFDEVKDQLKAAILPEKQQEVFKKLKEDLK 276 Score = 42.3 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 13/136 (9%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEV 430 Q++ + K + + + + + L G + DE++++ + + + GK Sbjct: 151 EQVKASHILVKTEPEAQEILKQLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKG------ 204 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 A +P E+ +F + V Y +++ PA R +EV +K Sbjct: 205 AMLPDFEKAVFGL-----KEGAISGVVKTKFGYHIIKLTGKRPAGIRPFDEVKDQLKAAI 259 Query: 491 KTVKTAEEVSSKANQL 506 K E L Sbjct: 260 LPEKQQEVFKKLKEDL 275 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 10/151 (6%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 VK VKT E +L+ K G NF ++ K + Sbjct: 151 EQVKASHILVKTEPEAQE-----ILKQLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGA 205 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMN 599 D VF + ++ Y + K+T + P E KD+ + + Sbjct: 206 MLPDFEKAVFGLKEGAI-SGVVKTKFGYHIIKLTGKRPAGIRPFDEVKDQLKAAILPEKQ 264 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 +++ + LK +T+ +++++ G+ Sbjct: 265 QEVFKKLKEDLKKSAKLTIKEDVLKTLDGGK 295 >gi|119356179|ref|YP_910823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides DSM 266] gi|119353528|gb|ABL64399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides DSM 266] Length = 700 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 94/691 (13%), Positives = 206/691 (29%), Gaps = 125/691 (18%) Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI-GFVVNSERARSVGLD 86 WG++ + FS V + + + + + + G + G + + Sbjct: 30 WGMNFSGFSGKKRDIAGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITP--VTELEFR 87 Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP-------LFHGKDNKFSHDVFVS 139 ++ + +V L++ G+ V + F Sbjct: 88 QQAWNIVVDQTLLEEQFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKK--- 144 Query: 140 RLAREGINEK------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD------------- 180 L + K + + L ++ +R + LD Sbjct: 145 -LDVARRDPKNKDLWLQLEKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSAS 203 Query: 181 --------------------QAKRFYFEN---------RSVDYIVLNNRHVPAIADPSNA 211 + +++Y E+ RS DY+ + + Sbjct: 204 FVPVPLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLPSRSADYVFFPLTPSSKDSSSVRS 263 Query: 212 VLTQWFEK-----YKDNYR-----APEYKRISYILFDVHEKEKKIEISNDELQA------ 255 L + +Y P + Y + I S L+A Sbjct: 264 ELESLRSEFSAAVNDTDYVKVQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAIVGP 323 Query: 256 -----EYE--KNKEKYFSPEIRTVEQLVFP----NQKEADEAFQS-------LKKGKKFI 297 EY K KE + I ++ N++E ++ + L+ G F Sbjct: 324 VADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFE 383 Query: 298 QLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E+ G ++ LG F++E + + ++FS G + FG I V Sbjct: 384 TLAGKYSEDPGSAVQGGDLGWFTRESML-PEFSAAVFS-GTPGAVVKPVQTKFGLHIIKV 441 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + ++ + V+ + + A + ++ +++ + EK+V Sbjct: 442 TGFDQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAKDK-----GLEKSASTEKLV-- 494 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 V G K +A I + +++ F + V + + +++ Sbjct: 495 ----VGKTGDFGKHTLIADIGFSDKI--TAFAFNGKEGALSDVIETEKGFYVMKLTGVND 548 Query: 474 ARDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL-GASLLTT 531 R+L+ ++ + + +K + K L L + G I G ++T Sbjct: 549 TGYRRLDADLKKRITAELVRLKKEPVLEKK---LSLNAKQSGATLDKIAAAYPGTVVVTA 605 Query: 532 NQINRMDNENKFFGYD-GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQE 586 + I +D +G+D + + S E P++ Y + ++ + Sbjct: 606 DDIRWVDGFIPGYGFDQPLVEAMSAMTEGKLSGPVKTNDGYAIVLLSKKNMPAERDVEAA 665 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 K F + Q L A +K + Sbjct: 666 KTAFTPKIIQDKLNRLFTEYFATIKKNAVIE 696 >gi|118581987|ref|YP_903237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] gi|118504697|gb|ABL01180.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] Length = 300 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 5/167 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ F + E +IS+ +L+ Y++N +K+ + E ++ +KEA E Sbjct: 109 KKRLIVEAFLKKKVETDAQISDADLKKFYDQNIDKFKAGEQIRASHILVKTEKEAKEILA 168 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA + S LG F K + + + +L K+G + V+ Sbjct: 169 QLKGGAAFEELARKHSVDSSSAKGGDLGWFGKGAMV-PAFERAALAL-KEGQVSDVVKSD 226 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I ++ +P+ T F EVK I + +K E ++ L+ Sbjct: 227 FGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQQEIFQKIKDELK 273 Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 13/136 (9%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI--VSIDLPLVDFAGKDVKGKEV 430 Q+R + K +++ K + L G + +E++R+ + S + + GK Sbjct: 148 EQIRASHILVKTEKEAKEILAQLKGGAAFEELARKHSVDSSSAKGGDLGWFGKG------ 201 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 A +P E+ + + V D + +++ PA R +EV +K Sbjct: 202 AMVPAFERAALAL-----KEGQVSDVVKSDFGFHIIKLTGKRPAGTRPFDEVKDQIKAAL 256 Query: 491 KTVKTAEEVSSKANQL 506 K E ++L Sbjct: 257 MPSKQQEIFQKIKDEL 272 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 10/145 (6%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 ++ VKT +E +L K G F ++ + + + Sbjct: 148 EQIRASHILVKTEKEAKE-----ILAQLKGGAAFEELARKHSVDSSSAKGGDLGWFGKGA 202 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMN 599 + V +++ + + K+T + P E KD+ + L Sbjct: 203 MVPAFERAALALKEGQV-SDVVKSDFGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQ 261 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQ 624 +++ + LK +TV ++ + Sbjct: 262 QEIFQKIKDELKKSAKITVKEDALN 286 >gi|153952806|ref|YP_001393571.1| peptidylprolyl isomerase [Clostridium kluyveri DSM 555] gi|219853471|ref|YP_002470593.1| hypothetical protein CKR_0128 [Clostridium kluyveri NBRC 12016] gi|189037913|sp|A5N4J2|PRSA_CLOK5 RecName: Full=Foldase protein prsA; Flags: Precursor gi|254783411|sp|B9DY54|PRSA_CLOK1 RecName: Full=Foldase protein prsA; Flags: Precursor gi|146345687|gb|EDK32223.1| PrsA [Clostridium kluyveri DSM 555] gi|219567195|dbj|BAH05179.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 341 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 53/392 (13%), Positives = 118/392 (30%), Gaps = 83/392 (21%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWK--QELGM 66 + ++ + L F+ + + STV V +K+ S Q + Sbjct: 4 IGRLAVTALIAVFIFSVTGCNMIEKTPEAIAKSTVAEVNGEKITRSDLDKDPNTIQLITQ 63 Query: 67 ISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARS 122 + Q+ G + ++ILD+L++ + Q +++ L D ++ ++ + Sbjct: 64 VKQQYGENYKENEDAVNTIKTQKEQILDDLITNKVVAQKAKELKLLPDETKLKSDMETQI 123 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 ++ + F + L +G E+ + + L + + Sbjct: 124 AQLKKQNFNDDAEQFNTALKAQGFTEESFKAMFLSQLRTQQTLEKVTESIS--------- 174 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 ++ + ++ K Y Sbjct: 175 ---------------------KNIKITDKEIEDYYNTNKSKYT----------------- 196 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 P + ++ + EA + + L G+ F ++A+E Sbjct: 197 ----------------------EQPNKMHLAHILVKTEDEAKKVKKRLDDGEDFAKVAKE 234 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIF---SLA-KKGDFTPVIHGSFGYVIAHVSNIKP 358 + + G D S D+ F +LA K+G + + SFGY I + Sbjct: 235 VSQDTASKDNGGDLGTVNYDNSGYDADFMAGALALKEGAISAPVKSSFGYHIIKCIKKEE 294 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + VK I Q+ K + V + + Sbjct: 295 YPVKALSAVKDQIKTQLESDKKNSLVSQKIQE 326 >gi|254495144|ref|ZP_05108068.1| peptidylprolyl isomerase [Polaribacter sp. MED152] gi|85819494|gb|EAQ40651.1| peptidylprolyl isomerase [Polaribacter sp. MED152] Length = 695 Score = 140 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 96/722 (13%), Positives = 215/722 (29%), Gaps = 133/722 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 L IR+ R+ I + + F++ F+ S + V V + + F Sbjct: 4 LSKIRE--RSMFLIIIIGLALFAFVLDPSTLGDFFNSSKVNEVGEVDGEAISRQEFA--- 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118 EL Q+ G + +A K + DN+V + + G+ VW E Sbjct: 59 -NELESYKQQTGGRASEMQAA-----KTVWDNIVRKKIYKNQLNEAGITIGEADVWNEVV 112 Query: 119 ----IARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGM 167 + +P + + F + F LA N ++ Y++ + Sbjct: 113 NAPFVQNNPQYQNEVGLFDENKFKQFLADTKENNEQLWAQWSSYMNQVRDNAETNTFNNL 172 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226 G+ S + + ++ + + + + + + + +KD ++ Sbjct: 173 VTAGLGASLKEGEMQYLIDNTKLNGQFVYVPYTSIADSLVKLKKSEVEAYIQSHKDQFQV 232 Query: 227 PEYKRISY--------------ILFDVHEKEKKIEISNDEL------------------- 253 + ISY I+ DV ++ + +++++ Sbjct: 233 EASRDISYVKFDIVATPEDEQAIMLDVAGLKEDFKTTDNDVLFLSENDSDTGLNTGYVFK 292 Query: 254 --------QAEYEKNKEKYFSP-------------------EIRTVEQLVFP-------- 278 + N+ P + ++ P Sbjct: 293 SNVNAIIADDLFAANEGDIVGPYKDLNAIKLSKITEVTQLPDSVKASHILIPFVGAQRVA 352 Query: 279 -----NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325 ++EA + SL ++ KF LA+E + G Y + + Sbjct: 353 ADVTRTEEEAKQLADSLLAVVKRRKSKFADLAKEFSSDQASAVKGGEYDWYNYNRMTPAF 412 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKDIANQMRITKASEKV 384 D F KKGD V+ FG+ + + + K + KDI + + V Sbjct: 413 RDFTFE-GKKGDM-DVVKTPFGFHVIKIDDQKNKQKVIKMATFSKDI---VPSEETENAV 467 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + ++ + + ++ ++ G V + V I + Q++ F Sbjct: 468 FRQAEEFALAVSKENNFFDAAKE-----LNYKPKPAVGLKVLDESVPGIGNQRQIVSWAF 522 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + ++ L + + + + + V+ K A ++ K N Sbjct: 523 NNETDVNAFKRFDLEGSHVVAF-VTGIEEEGLMSVNKATSKVRPILMNEKKAALIAEKFN 581 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKC 562 G + +I K SL T + I G + + +++ + + Sbjct: 582 ---------GSDLPEIAKANNTSLRTASNITLKSPTLSGVGVEPKIVGAMYNAEIGKLYN 632 Query: 563 FPIENGLSYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 +E FK+T + + D + + + +K V + Sbjct: 633 -KVEGNRGVFAFKLTSKEEPTALPNYDANRKRIAEARKRQTFKMY-EAIKKASDVEDNRA 690 Query: 622 LI 623 + Sbjct: 691 FM 692 >gi|225850985|ref|YP_002731219.1| ppic-type ppiase domain protein [Persephonella marina EX-H1] gi|225646600|gb|ACO04786.1| ppic-type ppiase domain protein [Persephonella marina EX-H1] Length = 325 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 61/387 (15%), Positives = 129/387 (33%), Gaps = 80/387 (20%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V L ++ + G + + + V VG ++ K L M Sbjct: 4 VIIFLLGLITSVYAYEGFGWNIDPSTKNKVVAKVGDVEITEMEVQRMMKILLPM--NFYH 61 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-SPLFHGKDNK 131 + E+ + + +K + NL+ L + GL+ + + + + Sbjct: 62 RNITEEKLKE--IREKAIQNLIYRELLYYEAKKKGLKVTEKEINNLMDQLIKQYK----- 114 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 S + L + G+ + + K L ++ + Sbjct: 115 -SKENLEKLLKQTGLTIEGFKKELEKRLLVDKLIKKY----------------------- 150 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 AI ++ L +++EK KD ++ P ++ YI K++ S+ Sbjct: 151 ------------AIVSLTDKDLKEYYEKNKDKFKEPASVKVRYIYI-------KVDPSD- 190 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--- 308 P+ R +++A +A++ +K+GK F +A LS Sbjct: 191 ---------------PKGRE------KAREKAKKAYKEIKEGKDFGDVAYRYSDDLSRIK 229 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 +G K P + + I+ L G + +I G I + + +P V ++E+K Sbjct: 230 GGDIGYVHKGRFPKQ-IEEEIYKL-DVGQVSKIIETDTGLHIVKIEDKRPPRLVPYEEIK 287 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFL 395 + ++ K E K ++ L Sbjct: 288 DKLKKELTEVMQERKFNELIKDAKKNL 314 Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 6/132 (4%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 K E+ KA + + KEGK+F D+ L + F +++ Sbjct: 192 KGREKAREKAKK-AYKEIKEGKDFGDVAYRYSDDLSRIKGGDIGYVHKGRFPKQIEEEIY 250 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMNKDLLDSVIAY 609 V V IE + K+ + + P +E KDK LT++M + + +I Sbjct: 251 KLDVGQVSKI-IETDTGLHIVKIEDKRPPRLVPYEEIKDKLKKELTEVMQERKFNELIKD 309 Query: 610 LKSQYSVTVHDN 621 K V ++++ Sbjct: 310 AKKNLKVEIYED 321 Score = 41.5 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 86/270 (31%), Gaps = 57/270 (21%) Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 YE K+ E + L+ D+ + K + +L ++ G ++ Sbjct: 87 YYEAKKKGLKVTEK-EINNLM-------DQLIKQYKSKENLEKLLKQTGLTIEGFKK-EL 137 Query: 316 SKEYIPDVSLAD-SIFSLA----------KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 K + D + +I SL K F Y+ V P Sbjct: 138 EKRLLVDKLIKKYAIVSLTDKDLKEYYEKNKDKFKEPASVKVRYIYIKVDPSDPKG---- 193 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAG 422 KA EK K+ YK ++E G +++ R + I + + Sbjct: 194 ------------REKAREKAKKAYKEIKE----GKDFGDVAYRYSDDLSRIKGGDIGYVH 237 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 K K++ YK + + + D V+I++ P R EE+ Sbjct: 238 KGRFPKQIEEEIYKLDV-----------GQVSKIIETDTGLHIVKIEDKRPPRLVPYEEI 286 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 +KK+ V K N+L+ + K Sbjct: 287 KDKLKKELTEVMQER----KFNELIKDAKK 312 >gi|331268339|ref|YP_004394831.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum BKT015925] gi|329124889|gb|AEB74834.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum BKT015925] Length = 348 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 58/407 (14%), Positives = 120/407 (29%), Gaps = 84/407 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW- 60 ++ IRK VA L V + + + + + V VG +K+ + + Sbjct: 1 MKNIRK----LVATAVLCVFTMSAVGCSMIEKTPEAIKKTVVAKVGDKKITKGELDSHFG 56 Query: 61 -KQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116 K+ L Q+ G + + + + S L Q E + L + + Sbjct: 57 VKRYLDQFKQQYGENFEQNPQVKEQVKQIKIAVAKQIASQEALKQEAEKLKLVPNDQELK 116 Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ + F + N S L G+ + ++ + + Sbjct: 117 KEMDKKIQEFKKEQNIKDDKGLDSALKMSGLQKSDFEKLIKDNIIIEKLQN--------- 167 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEYKR 231 + + + +++ KD Y + P Sbjct: 168 -------------------------ELTKNIKVDDKEIEKYYNTNKDKYPKDPKNPTKIH 202 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +++I+ E + E + L Sbjct: 203 VAHIILQAKTPEDDA-------------------------------KAKDEIKSIKEELN 231 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG F LA++ + S LGS D ++ +L K G + + FG Sbjct: 232 KGGDFAVLAKKYSQDGSKDKGGDLGSVPTVNSGFDQDFMNAALTL-KDGQISDPVKTQFG 290 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 Y I + + + + EVK + + K +E +K +K +++ Sbjct: 291 YHIIKMIKREEAPCKTLAEVKNQVKEDILQNKKNEVIKNKFKEIQDK 337 >gi|304439703|ref|ZP_07399603.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371809|gb|EFM25415.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 261 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 8/170 (4%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + E SY L + + +EI++++L+ Y+ +K+ + + ++ ++ A Sbjct: 84 KTKETLLKSYAL---GKLLETVEITDEDLKNYYDNHKDNFKNNASVEASHILVEDESVAK 140 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E + L G F +LA+E S +LG F+K + D+ F++ G+ + Sbjct: 141 EIKEKLNNGADFKELAKEYSNCPSKENGGNLGVFTKGQMVK-EFEDAAFNMG-VGEISDP 198 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I V+N +F+E K DI +R K + K +RL Sbjct: 199 VKTQFGYHIIKVTNKNDESVRTFEEAKPDIERLVRREKEKDLYKHTVERL 248 >gi|302389639|ref|YP_003825460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter oceani DSM 16646] gi|302200267|gb|ADL07837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter oceani DSM 16646] Length = 297 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 55/406 (13%), Positives = 119/406 (29%), Gaps = 121/406 (29%) Query: 4 IIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 IR+ + T +A L ++ S V V +++ + Sbjct: 6 KIRRKTVTYLIIATAILALIAGC----------SPGSSKEVVARVNGEEISKDELYDVM- 54 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + K+ LD LVS +D + + + E+ + Sbjct: 55 --------------------VKLVGKEALDYLVSQKIIDLEAKKQNINVSEEDIQRELEK 94 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 ++G + + F L G + +EY + ++ Sbjct: 95 VYEYYGGE-----EAFTQNLQMSGYSLEEYKKDLAMDIKIKKLLEP-------------- 135 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + + +FE+ KDN+ + Sbjct: 136 -----------------------KISITEEEIKSYFEENKDNFAREKQV----------- 161 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 ++ N+++A+E LK G+ F +LA+ Sbjct: 162 -----------------------------RARHILVENEEKANEVIAKLKSGEDFAELAK 192 Query: 302 EQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + LG F + + ++ FSL K G+ + + +GY I V IK Sbjct: 193 QYSTDTATKEKGGDLGFFGRGDMVK-EFEEAAFSL-KVGEISSPVKTQYGYHIIKVEEIK 250 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + +++E K I + + K ++ + L + + + + Sbjct: 251 EAQEANYEESKDKIKDILLNQKVQQEYSTWMQELYQQYEVENLLAD 296 >gi|298504157|gb|ADI82880.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type [Geobacter sulfurreducens KN400] Length = 313 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 9/176 (5%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ + + E+++++S++EL+ Y++NK+K+ S ++ ++K A E + Sbjct: 112 KKRVVVEAYLKKKVEEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVK 171 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA++ + LG FSK + F L K+G+ + ++ Sbjct: 172 ELKGGANFEELAKKHSIDSAAAKGGDLGWFSKGNMV-PEFEKVAFGL-KEGETSGIVRTQ 229 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 FGY I V+ +P+ +F+EVK I + K E ++L+E + G ++ Sbjct: 230 FGYHIIKVTGKRPAGERTFEEVKDQIKAAVLPGKQQEVF----QKLKEDIKKGATI 281 Score = 43.8 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 17/156 (10%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 Q++ + + ++ + + + L G + +E++++ I S D G KG V Sbjct: 151 AQIKASHILVRDEKLAQEIVKELKGGANFEELAKKHSIDSAAAKGGDL-GWFSKGNMV-- 207 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 P E++ F + + + Y +++ PA +R EEV +K Sbjct: 208 -PEFEKVAFGL-----KEGETSGIVRTQFGYHIIKVTGKRPAGERTFEEVKDQIKAAVLP 261 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNF---RDIGKNLG 525 K E + E K+G D+ K LG Sbjct: 262 GKQQEVFQK-----LKEDIKKGATISIKEDVLKGLG 292 >gi|39995127|ref|NP_951078.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39981889|gb|AAR33351.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] Length = 313 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 9/176 (5%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ + + E+++++S++EL+ Y++NK+K+ S ++ ++K A E + Sbjct: 112 KKRVVVEAYLKKKVEEQVQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVK 171 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA++ + LG FSK + F L K+G+ + ++ Sbjct: 172 ELKGGANFEELAKKHSIDSAAAKGGDLGWFSKGNMV-PEFEKVAFGL-KEGETSGIVRTQ 229 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 FGY I V+ +P+ +F+EVK I + K E ++L+E + G ++ Sbjct: 230 FGYHIIKVTGKRPAGERTFEEVKDQIKAAVLPGKQQEVF----QKLKEDIKKGATI 281 Score = 43.8 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 17/156 (10%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 Q++ + + ++ + + + L G + +E++++ I S D G KG V Sbjct: 151 AQIKASHILVRDEKLAQEIVKELKGGANFEELAKKHSIDSAAAKGGDL-GWFSKGNMV-- 207 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 P E++ F + + + Y +++ PA +R EEV +K Sbjct: 208 -PEFEKVAFGL-----KEGETSGIVRTQFGYHIIKVTGKRPAGERTFEEVKDQIKAAVLP 261 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNF---RDIGKNLG 525 K E + E K+G D+ K LG Sbjct: 262 GKQQEVFQK-----LKEDIKKGATISIKEDVLKGLG 292 >gi|218781644|ref|YP_002432962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] gi|218763028|gb|ACL05494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] Length = 358 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 142/408 (34%), Gaps = 73/408 (17%) Query: 19 VVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 ++ L W + A + +G+ V V + + + Q GM++ G Sbjct: 8 ALVIAMLLAWVIPGAALAEAGADDGSEKVVAVVNGASITQAELDQALMQ--GMLNATKGM 65 Query: 74 VVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 ++ E+A+ ++LD L+ L Q IE + A G + ++ Sbjct: 66 QLSPEQAQRFKSQYSGRVLDKLIMDELLSQEIEKRKITAAPGEMAKALSEQLELQ----- 120 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 L G +KEY + K ++ F+ G+ + A + E Sbjct: 121 ---------LMASGRTKKEYEESDLK--AKGQTWDQFIAGIAARP---EVAHMYLLEK-- 164 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + P ++A + ++++ + + PE R S+ILF + + Sbjct: 165 -----MAKTIAPEKVKVTDAEIRKFYDDNLESRFTKPEEVRASHILFGTKDAK------- 212 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS- 308 + E + +K+A E KK G F LA E S Sbjct: 213 ---------------TAEEKEA------IKKQAQEVLLKAKKPGADFAALAREYSSCPSK 251 Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 L F+KE + + + FS+ + G+ + ++ FGY I V++ P+ F+ Sbjct: 252 EKGGDLNFFTKERMV-PEFSKAAFSM-EVGEISNLVETQFGYHIIKVTDKTPAEVRPFES 309 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFL---ALGTSMDEISRREKIV 411 I + + +++ L+E G D ++ +K Sbjct: 310 AALAIRKGLETQRVQQELMTLANGLKEKATITYPGVLPDSVAGEQKAT 357 >gi|304406731|ref|ZP_07388386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304344264|gb|EFM10103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 362 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 13/241 (5%) Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP------SNAVLT 214 R G+ GG + L + IV+++ + A S L Sbjct: 113 RQLYEGLLGGGRGKTQLDNLIDTELVKQEADKKGIVVSDADIAAELAVMVRRIGSEEALN 172 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + ++ + Y + + + +I I++ E++ Y +N E PE Sbjct: 173 EALKQNQLT-VEDLYPDLIQQVRLRKLLQSRIHITDQEVRDYYTENLEYITQPEQVRASH 231 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330 ++ + EAD + L G F +A+++ LG F + + D S D+ F Sbjct: 232 ILVETKAEADIIVKELNNGGDFATIAKQKSLDTGSKNAGGDLGYFERG-VMDQSFEDAAF 290 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 SL K G+ + + FGY I V++ K + T +F+E K I + K E + Sbjct: 291 SL-KVGEISKPVKSEFGYHIILVTDHKAAVTPTFEEEKATIREMLTTEKIYELAATFIEG 349 Query: 391 L 391 L Sbjct: 350 L 350 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 14/150 (9%) Query: 481 EVLTDVKKDWKTVKTAEEVSS-------KAN-QLVLEYSKEGKNFRDIGKNLGASLLTTN 532 EV ++ + + E+V + KA ++++ G +F I K + N Sbjct: 209 EVRDYYTENLEYITQPEQVRASHILVETKAEADIIVKELNNGGDFATIAKQKSLDTGSKN 268 Query: 533 QINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEK 587 + E FS V + P+++ Y + VT+ +EK Sbjct: 269 AGGDLGYFERGVMDQSFEDAAFSLKVGEI-SKPVKSEFGYHIILVTDHKAAVTPTFEEEK 327 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 LT +L + I L++Q + Sbjct: 328 ATIREMLTTEKIYELAATFIEGLRAQAKIE 357 >gi|297521372|ref|ZP_06939758.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 160 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 2/161 (1%) Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 + L + G+ +Y L+ ++ G D+ + R V Sbjct: 2 RYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREA 61 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 ++ + A + + ++E+ K+N+ PE R+SYI D + +S+ ++Q+ Sbjct: 62 TIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATM--QQPVSDADIQS 119 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 Y+++++++ P+ + + EA L KG F Sbjct: 120 YYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDF 160 >gi|297622266|ref|YP_003703700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera radiovictrix DSM 17093] gi|297163446|gb|ADI13157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera radiovictrix DSM 17093] Length = 398 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 110/356 (30%), Gaps = 87/356 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGAT 98 + V+ +G ++V F + L ++ + G ++ G L L+ + Sbjct: 64 DAVVLELGGERVSAGDFEGRFNIALRNLAAQQGIPLDPVTLAQFGTLKPAFLEQFATERA 123 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L Q E GL V E+ ++ G++ + + LA+ G E ++ Sbjct: 124 LLQEAEARGLAPADEAVEAELEQARAAAGEN-------YEALLAQGGF---EDEAALREL 173 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + + V + A + + ++ ++E Sbjct: 174 IYESLALQGLV------------------------------DALEAEVEVGDEAVSAYYE 203 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + E ++ Sbjct: 204 ANQAQFERSEEV----------------------------------------CARHILVE 223 Query: 279 NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 ++ A+ L+ G+ F +LA + G + LG + ++ F+ + Sbjct: 224 DEATAEALLTRLEAGEDFGELARDNSTDPGSAPEGGDLGCLPRGVTV-PEFEEAAFA-TE 281 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ T + FGY + V P+ T +EV+ I Q+R +E++ + Sbjct: 282 VGETTGPVRSDFGYHLIRVYERNPAETAPLEEVRSQIEGQLRNEGLNERIASLVEA 337 Score = 47.3 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 28/252 (11%) Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 A E+ + + L ++ EA+ G+ + L QG + +L Sbjct: 113 AFLEQFATERALLQEAEARGLAPADEAVEAELEQARAAAGENYEALLA-QGGFEDEAALR 171 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 E + L D++ + + GD VS + F+ ++ A Sbjct: 172 ELIYESLALQGLVDALEAEVEVGD-------------EAVSAYYEANQAQFERSEEVCAR 218 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + + + + L L G E++R P G +G V Sbjct: 219 HILVED-----EATAEALLTRLEAGEDFGELARDNSTDPGSAPEGGDLGCLPRGVTV--- 270 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P E+ F + D Y +++ E PA LEEV + ++ + Sbjct: 271 PEFEEAAFATEVGETTGPVRS-----DFGYHLIRVYERNPAETAPLEEVRSQIEGQLRNE 325 Query: 494 KTAEEVSSKANQ 505 E ++S Sbjct: 326 GLNERIASLVEA 337 >gi|150014979|ref|YP_001307233.1| peptidylprolyl isomerase [Clostridium beijerinckii NCIMB 8052] gi|149901444|gb|ABR32277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium beijerinckii NCIMB 8052] Length = 362 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 60/396 (15%), Positives = 127/396 (32%), Gaps = 79/396 (19%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K + +VA + +V + V + + + + + +VG +K+ ++ Sbjct: 20 KKLKKFVAALAMVTIAVSAMGCKMIEKTPEAIQKTVLATVGNEKITKGDLDKEMEKYTAQ 79 Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHG----RVWGEI 119 + Q+ G S L + + LD+LV+ + Q ++ L+ +V +I Sbjct: 80 LKQQYGDNYESNAQVKDQLQQAKKQELDSLVTQKVVLQKATELNLKPSDDDINKQVDDQI 139 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A+ + ++ +F S L + G+ E + D + V Sbjct: 140 AQIKSQYSEEGQF-----ESVLEQNGLTEDQLKDVVKNNVIMQAVQQ------------- 181 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYILFD 238 + + ++ + ++ + KD Y S+IL Sbjct: 182 ---------------------DIVKDIEVTDDDVQTYYNENKDSKYTQGAGANASHILIA 220 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + I+ + +A++ L G F + Sbjct: 221 EKASDGSIDYD----------------------------ASLTKANDIKAKLDSGADFAK 252 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E SLG + V+ F K+G+ + + FGY I + Sbjct: 253 LAKENSTDSGTKDNGGSLGFVAYNSTQLVAEFMDGFKNLKEGEISAPVKSQFGYHIIKAT 312 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +K S F++VK I + + K + + Sbjct: 313 GLKDSQVTPFEQVKDQIKSSLLQQKQQDALSSKITE 348 Score = 37.3 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 6/139 (4%) Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + KAS+ + L + + +D + K+ +G G + + Sbjct: 218 LIAEKASDGSIDYDASLTKANDIKAKLDSGADFAKLAK---ENSTDSGTKDNGGSLGFVA 274 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDG---SYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 Y L F K+ ++ P Y ++ ++ E+V +K Sbjct: 275 YNSTQLVAEFMDGFKNLKEGEISAPVKSQFGYHIIKATGLKDSQVTPFEQVKDQIKSSLL 334 Query: 492 TVKTAEEVSSKANQLVLEY 510 K + +SSK + + Sbjct: 335 QQKQQDALSSKITEWKTDL 353 >gi|39997524|ref|NP_953475.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39984415|gb|AAR35802.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] Length = 351 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 127/359 (35%), Gaps = 77/359 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 ++ VV V + + + K + ++ V + A+ +++ + L++ L Sbjct: 59 AAVVVKVNGVAITRAEVDRAKKVLMS--QNRMTQPVTPDIAQK--VEEAAVSQLIAKELL 114 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158 Q ++ ++ +++S +F S + ++ L + EK+ + Sbjct: 115 YQAGRKQEIKDLDKQIQERVSQSKA------RFPSQEEYLKTLKSMDMTEKDVETFARED 168 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L +++ + V A S+ +++ Sbjct: 169 LVINNLIE---------------------------------KDVVAKTTVSDEEAKKFYN 195 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D ++ E + S+IL V + Sbjct: 196 DNIDKFKRDETVKASHILIKVEPNASADD----------------------------KKK 227 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +++A+ + +K G F ++A+++ + LG F K + + F++ K Sbjct: 228 AKEKAEAILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMV-PPFEKAAFAM-KP 285 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + V+ FGY I +++ +P+ TV F+E K I ++ K E + E + L++ Sbjct: 286 GEVSDVVETQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKA 344 Score = 40.7 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 5/116 (4%) Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 +L+ K G +F ++ K + F+ V +E Sbjct: 235 ILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEV-SDVVE 293 Query: 567 NGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Y + K+T+ + + KD+ + +L Q ++ ++ + LK + + Sbjct: 294 TQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKAAKIEM 349 >gi|330889993|gb|EGH22654.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str. 301020] Length = 208 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 69/209 (33%), Gaps = 5/209 (2%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR S+ W+AK + ++ G+ + S V + + + + Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60 Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q++G + L + L+ L Q D + Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESAPKGLIDRKLLLQGATDAKFSFSDAALD 120 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 ++ ++P F D KFS D F + + G + ++ + + V G ++ Sbjct: 121 QQLLQTPEFQ-VDGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 +D R + R + L Sbjct: 180 AQVDAFARLEKQTRDFASLTLPADTTAGK 208 >gi|78224731|ref|YP_386478.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] gi|78195986|gb|ABB33753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] Length = 323 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 5/167 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ F + E++ ++S++E++ YE+NK+K+ + ++ ++ EA + + Sbjct: 120 KKRVVVEAFLKKKVEEQAKVSDEEMKKFYEENKDKFKTGPQVHASHILMKSEDEAQKVLK 179 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK+G F +LA++ + LG FSK + +F L K+G+ + ++ Sbjct: 180 ELKEGGNFEELAKKHSIDSAAAKGGDLGWFSKGSMV-PEFEKVVFGL-KEGETSGIVKTK 237 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FGY I ++ +P+ +F EVK+ + + +K E ++ ++ Sbjct: 238 FGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEVFQKLKDDIK 284 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 11/160 (6%) Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K +++ +++ + L G + +E++++ I S D G KG V P E+++F Sbjct: 169 KSEDEAQKVLKELKEGGNFEELAKKHSIDSAAAKGGDL-GWFSKGSMV---PEFEKVVFG 224 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + + + Y +++ PA R +EV ++ K E Sbjct: 225 L-----KEGETSGIVKTKFGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEVFQKL 279 Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 + + + + D+ K +G + ++ Sbjct: 280 KDDI--KKGAKVTIKEDVLKGIGGAAAEKPAPAGPESTPA 317 >gi|298506467|gb|ADI85190.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter sulfurreducens KN400] Length = 351 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 127/359 (35%), Gaps = 77/359 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 ++ VV V + + + K + ++ + + A+ +++ + L++ L Sbjct: 59 AAVVVKVNGVAITRAEVDRAKKVLMS--QNRMTQPMTPDIAQK--VEEAAVSQLIAKELL 114 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158 Q ++ +V +++S +F S + ++ L + EK+ + Sbjct: 115 YQAGRKQEIKDLDKQVQERVSQSKA------RFPSQEEYLKTLKSMDMTEKDVETFARED 168 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L +++ + V A S+ +++ Sbjct: 169 LVINNLIE---------------------------------KEVVAKTTVSDEDAKKFYN 195 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D ++ E + S+IL V + Sbjct: 196 DNIDKFKRDETVKASHILIKVEPNASADD----------------------------KKK 227 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +++A+ + +K G F ++A+++ + LG F K + + F++ K Sbjct: 228 AKEKAEAILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMV-PPFEKAAFAM-KP 285 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + V+ FGY I +++ +P+ TV F+E K I ++ K E + E + L++ Sbjct: 286 GEVSDVVETQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKA 344 Score = 40.7 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 5/116 (4%) Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 +L+ K G +F ++ K + F+ V +E Sbjct: 235 ILKQVKGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEV-SDVVE 293 Query: 567 NGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 Y + K+T+ + + KD+ + +L Q ++ ++ + LK + + Sbjct: 294 TQFGYHIIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKAAKIEM 349 >gi|222056790|ref|YP_002539152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] gi|221566079|gb|ACM22051.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] Length = 308 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 9/202 (4%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 RI F + E++ +I + ELQ Y KNKEK+ + E ++ + EA E + L Sbjct: 112 RIIVEAFLKKKVEEQAKIGDAELQDFYNKNKEKFRTGEQVRASHILVKTEPEAQEILKQL 171 Query: 291 KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K G F +LA++Q + LG F K + +++F L K+G + ++ +G Sbjct: 172 KAGGNFEELAKKQSIDAAAAKGGDLGWFGKGSML-PEFENAVFGL-KEGATSGIVQTKYG 229 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I ++ +P+ EVK+ I + K E K+L+E L G + Sbjct: 230 YHIIKLTGKRPAGVRPLDEVKEQIKAAILPEKQQEVF----KKLKEDLKKGAKVTVKEDA 285 Query: 408 EKIVSIDLPLVDFAGKDVKGKE 429 K + + P + + Sbjct: 286 LKTLDGEKPADKSNAQPPAPDK 307 Score = 44.6 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 V+ VKT E +L+ K G NF ++ K + Sbjct: 149 EQVRASHILVKTEPEAQE-----ILKQLKAGGNFEELAKKQSIDAAAAKGGDLGWFGKGS 203 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQE-KDKFISYLTQMMN 599 + + VF ++ Y + K+T + P+ E K++ + + Sbjct: 204 MLPEFENAVFGLKEGATSGI-VQTKYGYHIIKLTGKRPAGVRPLDEVKEQIKAAILPEKQ 262 Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 +++ + LK VTV ++ + + LDGEK Sbjct: 263 QEVFKKLKEDLKKGAKVTVKEDAL-KTLDGEK 293 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 13/136 (9%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEV 430 Q+R + K + + + + + L G + +E+++++ + + + GK Sbjct: 149 EQVRASHILVKTEPEAQEILKQLKAGGNFEELAKKQSIDAAAAKGGDLGWFGKGS----- 203 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + VFG + + + Y +++ PA R L+EV +K Sbjct: 204 ----MLPEFENAVFGLKEGATSG--IVQTKYGYHIIKLTGKRPAGVRPLDEVKEQIKAAI 257 Query: 491 KTVKTAEEVSSKANQL 506 K E L Sbjct: 258 LPEKQQEVFKKLKEDL 273 >gi|322417708|ref|YP_004196931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320124095|gb|ADW11655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 308 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 5/159 (3%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ F + E +S+ ELQ Y KNK+K+ S ++ ++ EA E + Sbjct: 110 KKRVIVEAFLKKKIEDSGVVSDAELQDYYNKNKDKFKSDAQIRASHILVKSEAEAQEIQK 169 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA++ G + LG FSK + F L K+G+ + ++ Sbjct: 170 QLKAGASFEELAKKHSMDGAAQKGGDLGWFSKGSMI-PEFESVAFGL-KEGETSGIVKTQ 227 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 FGY I + +P+ SF+EVK I + TK E Sbjct: 228 FGYHIIKQTGKRPAGVRSFEEVKDQIKAALLPTKQQETF 266 Score = 41.5 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR--EKIVSIDLPLVDFAGKDVKGKEV 430 Q+R + K + + + +++ L G S +E++++ + + + K Sbjct: 149 AQIRASHILVKSEAEAQEIQKQLKAGASFEELAKKHSMDGAAQKGGDLGWFSKG------ 202 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 + IP E + F + + + Y ++ PA R EEV +K Sbjct: 203 SMIPEFESVAFGL-----KEGETSGIVKTQFGYHIIKQTGKRPAGVRSFEEVKDQIKAAL 257 Query: 491 KTVKTAE 497 K E Sbjct: 258 LPTKQQE 264 >gi|307265095|ref|ZP_07546655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919893|gb|EFN50107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 301 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 51/385 (13%), Positives = 110/385 (28%), Gaps = 113/385 (29%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + + F ++ + + + V +V + + + + ++ Q I + + Sbjct: 5 IALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTKDIWD 64 Query: 80 ARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 G + + +LD+L++ L Q + + E + + K Sbjct: 65 QDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDITKED 124 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + L + + ++ Sbjct: 125 VKNY---------------------LLINKLFDEYTKDVKV------------------- 144 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + L +++E K+ + Sbjct: 145 ---------------TEEELKKYYEDNKEQF----------------------------- 160 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----D 309 E+ ++ ++K A++ + L KG+ F LA+E + Sbjct: 161 --------------EVVKASHILVADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQG 206 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F + +FSL KKG+ + + +GY I I F EVK Sbjct: 207 GDLGEFPHGVMV-SEFDQVVFSL-KKGEISKPVKTDYGYHIIKSEGIT---IKPFDEVKD 261 Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394 I + K ++ +KE Y LE+ Sbjct: 262 AIEGYLLDDKKNQVIKEKYDALEKA 286 >gi|313676103|ref|YP_004054099.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa DSM 4126] gi|312942801|gb|ADR21991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa DSM 4126] Length = 703 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 79/620 (12%), Positives = 203/620 (32%), Gaps = 70/620 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW---GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 +R + + + + + FL+ G L S+ V + + + + Sbjct: 4 FNTLRVKMGSVLI-ALIGLSILAFLLTDLLGPDSMLLGGGRSNDVGEIAGKTINLPEYQR 62 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ G + + S + ++ D L+ + +++GLE + + Sbjct: 63 KVEEFRNNFRAGNGRAPSDQEMNS--IRQQAWDFLIIEKAFQEQYDELGLEVTNEELVDM 120 Query: 119 IARSPL-------FHGKD-NKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTD 163 + + F + +F+ + V+ + + +R Sbjct: 121 VQGDNISPIVKRNFTNPETGEFNKEQVVNMIRNIAQAPAEQQAQWYSFESSLVPARARAK 180 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN-RHVPAIADPSNAVLTQWFEKYKD 222 + G + ++A + EN V+Y+ + V ++ P+++ L ++ ++KD Sbjct: 181 YDELLGGSTYITKAEAERAYKKETENAEVEYLYVPFYSVVDSLVTPTDSELKSYYNEHKD 240 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 Y+ + ISYI ++ + + +E++ Sbjct: 241 QYKTDASRTISYISIELLPSGEDSTMMREEIEEL-------------------------- 274 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 FQ + F +L ++ S + K + ++ K+GD Sbjct: 275 -KTEFQKVDDDSAFARLNSDRSNSYRTYPIAQLPKILASNTNI-------IKEGDVLGPF 326 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 YV+ S I S + I + +A + +++ + + + G Sbjct: 327 IDEGAYVLYKASKIFEDTVSSVKASHILIEAEDDSDEADAQARKEAREVLQKAQSGQDFA 386 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 E+++ G +G+ V ++ VF K + + G Sbjct: 387 ELAKDFSD-GPSATRGGDLGWFREGQMV------DEFNEAVFAKSGTGVINEVIKTQYG- 438 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 Y +++ E A+ ++ + D+ T T + + KA+ L +K F + Sbjct: 439 YHIIKVTEEKTAKTYEIATIHRDIIP---TETTRDRLYRKAD-LFAASNKNYAEFTAAAE 494 Query: 523 NLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 S+ ++ +++ G + + F+ E E +VV +T+ Sbjct: 495 ENNYSVRSSGKMSPNQRSIGTLGSAREIVRWAFTDASEGKVSDVFETNTHFVVAVLTSET 554 Query: 581 VGPVQEKDKFISYLTQMMNK 600 + + + +++ + + Sbjct: 555 EKGTSDFKEVKALVSRAVKE 574 Score = 56.9 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 36/242 (14%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-------KKGKKFIQ 298 I+++ ++ Y EI T+ + + P + D ++ K +F Sbjct: 442 IKVTEEKTAKTY----------EIATIHRDIIPTETTRDRLYRKADLFAASNKNYAEFTA 491 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADS------IFSLAKKGDFTPVIHGSFGYVIAH 352 AEE S+ G S +L + F+ A +G + V + +V+A Sbjct: 492 AAEENNYSVRSS--GKMSPNQRSIGTLGSAREIVRWAFTDASEGKVSDVFETNTHFVVAV 549 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 +++ T F+EVK ++ ++ + E +KE L +++E++ Sbjct: 550 LTSETEKGTSDFKEVKALVSRAVKEKQKGEIIKEKLSGL------SGTLNEMASAYGA-- 601 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 D + ++ + + +++ +FG + L+ + + V++ Sbjct: 602 -DANVYTSNDVNISSNSLPNVGQAPKVIGTIFGME--LNTQSQPLEANNGIVIVKVLNRT 658 Query: 473 PA 474 PA Sbjct: 659 PA 660 >gi|254479750|ref|ZP_05093031.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034310|gb|EEB75103.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM 12653] Length = 271 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 51/355 (14%), Positives = 106/355 (29%), Gaps = 113/355 (31%) Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG------LDKKILDNLVSGATLD 100 +K+ + + ++Q I + + G + + +LD+LV+ L Sbjct: 2 NGEKITNAEYQQIFEQVKEQIESAPTYTKDIWNQDYQGKKFLDFVKENVLDSLVAQKLLV 61 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + + V E + F+ K K + + L Sbjct: 62 QEAKKKNITVTDKEVEEEYNKEKQFNSKVTK---------------------EQIREYLL 100 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 ++ ++ L ++++++ Sbjct: 101 IDKLL----------------------------------AEYTKDVKVTDEELKKYYDEH 126 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 K+++ E+ ++ ++ Sbjct: 127 KESF-------------------------------------------EVMRARHILVADE 143 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKG 336 K A++ +Q L KG+ F LA+E + LG F + ++ FSL K G Sbjct: 144 KTAEDIYQRLMKGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMV-PEFEEAAFSL-KLG 201 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + +GY I I F EVK I + + K ++ +KE Y L Sbjct: 202 EISKPVKTQYGYHIIKSEGIT---VKPFDEVKGTIESYLLNDKKNKVIKEKYDEL 253 >gi|108803753|ref|YP_643690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter xylanophilus DSM 9941] gi|108764996|gb|ABG03878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter xylanophilus DSM 9941] Length = 354 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 121/371 (32%), Gaps = 92/371 (24%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSG 96 SG+ V +V +++L ++ ++ G + + + +I+ LV+ Sbjct: 47 SGAQKVAVFEGGEVTQGQ----VQEQLDLLGRQSGLGEITPDSPQYQSAIAQIMPQLVTQ 102 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSP-------LFHGKDNKFSHDVFVSRLAREGINEK 149 + + G+ V EI R G+D + F L + GI E Sbjct: 103 EIAQAYAREHGITVTEREVEREIGRIKDQLVRQARAQGQDIG-REEAFRRALEQAGITEA 161 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209 + + + L V G A P+ Sbjct: 162 QLREQIREQLPVQKVQERVAG----------------------------------DARPT 187 Query: 210 NAVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + ++E+ ++ + P + + +ILF+ + Sbjct: 188 EEEVRDYYEENREAQFTTPAQRCVRHILFNPDQ--------------------------- 220 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324 ++ A+E + L++G F +LA E + LG + + Sbjct: 221 -----------RERAEEVKRRLEEGADFAELAREYSQDPGSREKGGDLGCIGRGETV-PN 268 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 ++ F A++G+ + FGY + V +++ T EV+ I Q+ T +EK Sbjct: 269 FEEAAFG-AEEGEVVGPVKTQFGYHVIKVYDVRRESTEPLSEVEDRIREQLAATAQAEKF 327 Query: 385 KEDYKRLEEFL 395 + +R EE Sbjct: 328 QRWVERQEELR 338 >gi|118443543|ref|YP_877117.1| peptidylprolyl isomerase [Clostridium novyi NT] gi|118133999|gb|ABK61043.1| parvulin-like peptidyl-prolyl isomerase [Clostridium novyi NT] Length = 348 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 130/408 (31%), Gaps = 88/408 (21%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ IRK VA + + V + + + + + V VG +K+ +++ Sbjct: 1 MKNIRK----LVATVAVCVFSMSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNF- 55 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKI-------LDNLVSGATLDQFIEDIGLEADHGR 114 + ++ + A + + +++ + + + L Q E +GL Sbjct: 56 -AVKRYEEQFKAQYGDKYAENPQVKEQLKQVKVATVQQMAAQEALKQEAEKLGLVPKEAE 114 Query: 115 VWGEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 + E + + N S++ F L G ++ + + + Sbjct: 115 LKKETDKKIQEMKKEQNIKSNEEFEKMLKASGFTKEGFESLVRDNIILEKLQN------- 167 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEY 229 + + +++E +KD Y + P Sbjct: 168 ---------------------------ELTKNVKVDEKEMQKYYETHKDKYPKDVKNPTK 200 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 +++I+ +E + + E + Sbjct: 201 VHLAHIILQPKSQED-------------------------------LAKCESEIKSIKEE 229 Query: 290 LKKGKKFIQLAEEQGKSLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L KG +F LA++ + S LG+ + D ++ L K G + + Sbjct: 230 LNKGAEFSVLAKKYSQDGSKEKGGDLGTVPTVDSGFDEQFMEAALPL-KDGQISEPVKTQ 288 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FGY I + + +F EVK +I + K + +K+ +K++++ Sbjct: 289 FGYHIIKMIKKEVKPCKTFAEVKNEINKFLLEEKKGKIIKDKFKQIQD 336 >gi|295132519|ref|YP_003583195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia profunda SM-A87] gi|294980534|gb|ADF50999.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Zunongwangia profunda SM-A87] Length = 702 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 80/649 (12%), Positives = 214/649 (32%), Gaps = 77/649 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR+ R+ + + + F++ + + +++ +V +++ F Sbjct: 4 LNKIRQ--RSVFLILIIALALFSFVLADVIRSGGFSGKDNSIATVNGEEISREEFA---- 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120 +++ Q + +++ +A ++ D ++ +++ +E +G+ A+ +V + Sbjct: 58 RQVEAYQQNMRGNISTTQAV-----NRVWDQELNQIIVEEQVEKLGIRAEQAQVRQMMRA 112 Query: 121 ---RSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGMFVG 170 ++P F + F + +A + Y + + ++ M Sbjct: 113 QMSQNPQFTNEAGMFDENRVKEYVASLKQTSPQMYQQWLSYEEGLAESAAQNIYANMIRT 172 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEY 229 G+ + QA + + Y+ + +P + S + + ++ + +K + Sbjct: 173 GVGATLTEGKQAYQLQNNTMDLRYVQIPFSSIPDDEVEVSKSEIKEYVDNHKAKFETEAA 232 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + I Y++F+ + E S + L A E E + + + ++ Sbjct: 233 RNIQYVIFNEEPSVEDKEESKNSLSALLEDRVE--------------YNSVSKTNDTIAG 278 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + ++ K +P AD +F+L +KG+ + + Sbjct: 279 FNTTSDDQEFVNSNSDLQQPVTFKF--KNQLPK-EFADDLFNL-EKGEVYGPYEENGYWK 334 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQ---MRITKASE---KVKEDYKRLEEFLALGTSMDE 403 ++ + K E+ I + A + + K+L + LA Sbjct: 335 LSKLVETK--------EIPDSIKASHILLGFQGAQAGGTRTESAAKQLADSLAGVIK--- 383 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + K+ ++ +F+ + + Y + D L+ + + Sbjct: 384 -ADKSKMAAL---ATEFSDDPSAAQNSGDLGYFRPGMMVPTFDDFVLNNNEGTVGVVETD 439 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGK 522 + DR+ + V ++ + + N++ G+ +F + K Sbjct: 440 FGYHVIYIEEQTDREKAVKIATVAREIDATEGTR--NKLFNEVTKFEIAAGEGDFTEEAK 497 Query: 523 NLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 + T + +D G + F ++ E Y+V ++T K Sbjct: 498 AADYRIRTVRDVKALDENIPGVGQQRRVVQWAFEDDAKVGDVKRFETPTGYIVAQITAKK 557 Query: 581 ----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 + P + I LT+ +++ I+ TV + Sbjct: 558 NKGLMSPEDASAEVIPILTKQKKAEIIKEKIS------GTTVDQVAENQ 600 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 94/267 (35%), Gaps = 37/267 (13%) Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-----LKKGK-KFIQLAEEQG----- 304 E+ ++ + +I TV + + + ++ F + G+ F + A+ Sbjct: 446 YIEEQTDREKAVKIATVAREIDATEGTRNKLFNEVTKFEIAAGEGDFTEEAKAADYRIRT 505 Query: 305 ----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 K+L + G + + + D K GD GY++A ++ K Sbjct: 506 VRDVKALDENIPGVGQQRRVVQWAFEDDA----KVGDVKR-FETPTGYIVAQITAKKNKG 560 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 +S ++ ++ + K +E +KE GT++D+++ + + V+ Sbjct: 561 LMSPEDASAEVIPILTKQKKAEIIKEKI--------SGTTVDQVAENQNKIVQTANAVNL 612 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD---R 477 + +A + +++ V+ + G Y+ + +S + Sbjct: 613 SS-----PTLAGAGSEPEVVGAVYAL-GVGETSKPIVGDKGVYVVELVSKSEAPELDSYK 666 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + T ++ + E + +KA Sbjct: 667 PFAQQETSSRRQMANSRAFEALKAKAE 693 Score = 44.6 bits (104), Expect = 0.058, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 10/140 (7%) Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--- 321 SPE + E + +++ E + G Q+AE Q K + + + S + Sbjct: 562 MSPEDASAEVIPILTKQKKAEIIKEKISGTTVDQVAENQNKIVQTANAVNLSSPTLAGAG 621 Query: 322 -DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMR 376 + + ++++L G+ + I G G + + + + F + + QM Sbjct: 622 SEPEVVGAVYALG-VGETSKPIVGDKGVYVVELVSKSEAPELDSYKPFAQQETSSRRQMA 680 Query: 377 ITKASEKVKEDYKRLEEFLA 396 ++A E +K + +E+ A Sbjct: 681 NSRAFEALKAKAE-IEDKRA 699 >gi|297374635|emb|CBL42922.1| PpiC-type peptidyl-prolyl cistrans isomerase [Candidatus Magnetobacterium bavaricum] Length = 323 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 26/256 (10%) Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 L +E I ++ + K+ + MF G D KR E + + + L + Sbjct: 39 LGQETITSEQLQEELAKLPPN--IKAMFTGK--------DGLKRLVDEVKKREVLYLEAK 88 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 V DP F K ++ + L + + K + ++ +E + Y++N Sbjct: 89 KVGLDKDPE-------FTKKITEFK---KINLINTLIQKNVQAKNVTVTPEEAKKYYDEN 138 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFS 316 ++++ PE ++ ++EA + + LKKG F A+ + + L FS Sbjct: 139 QKEFVMPEQVRAVHILVKTEQEAKDLYDKLKKGGDFAATAKSVSMDTATAEKGGDLDFFS 198 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + + S +++F L KKG+ + + SFGY I V + K + T F+ VK I + Sbjct: 199 RGQM-EPSFDEAVFKL-KKGELSTPVKTSFGYHIIKVVDNKEAKTTDFESVKPMIIQYLT 256 Query: 377 ITKASEKVKEDYKRLE 392 K + Y +E Sbjct: 257 GEKQKKTFDTYYSSVE 272 >gi|194333180|ref|YP_002015040.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris aestuarii DSM 271] gi|194310998|gb|ACF45393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris aestuarii DSM 271] Length = 694 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 84/710 (11%), Positives = 212/710 (29%), Gaps = 115/710 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 + +R + + + L + WG++ + F+ G V V + ++ + Sbjct: 1 MTKLRDKTHIVLYTLLAAFLALIVFEWGMNSSGFTGGG-VLAGKVNGTPVEYRNYEQVYD 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + S+ L ++ + LV L+ ++ + V + Sbjct: 60 SLVDNFRRTSPQEEISDEIER-ELRQRAWNLLVDQILLEDALQSFSIHVADAEVLAAVES 118 Query: 122 S-------PLFHGKD-NKFSHDVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGM 167 F + + D F ++ + + + L + + Sbjct: 119 DSPPMIIRQNFINPETGEIDRDRFEQ----ARMDPANSDIWLQIEEIIRRELMVQKLQRV 174 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYR 225 ++ ++ LD F + S ++ L + S+ L +++E ++ +R Sbjct: 175 LATTVKVTSEELDALYDRQFASYSATFLTLPFSAAGPDSLFAVSDKELNEYYESNRELFR 234 Query: 226 APEYKRISYILFDV--------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 + + Y+ F + S+D+ + ++ + R Sbjct: 235 QEPTRSLDYVSFPALPTGRDSVAVRMELEGLAAEFAASDDD-SSFVSLQSDRGDTFNKRY 293 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLA----------EEQGKS-----LSDISLGSFS 316 P A SL G +A + G S I LG + Sbjct: 294 TRADFSPAAAAAVFDSASLSDGALIGPVADRNVYRLLKIRKSGTDGAVVRASHILLGFPA 353 Query: 317 KEYIPDVSLADSIFSL---AKKGDF-------------TPVIHGSFGYVIAHVSNIKPSF 360 + + S+ K G + G G+ K + Sbjct: 354 GDAAARNDAEERAASIMNELKNGKSFDLLAREFSDDPGSAPHGGDLGWF------AKGAM 407 Query: 361 TVSFQEVK---------KDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEI-- 404 F++ +A Q +++T + + + + +++ + Sbjct: 408 VPDFEKAAFGAAPGRVVGPVATQFGLHIIKVTGRDNRFIDCSEVVRSIRPSSNTLESVRR 467 Query: 405 -SRREKIVSIDLPL----------VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 + +I ++D V G K + I + Q+ F D Sbjct: 468 TAAEFQIEAVDKGFQKALGASGLKVSSTGPFTKNGMIPGIGFNNQITRFAF--DASKGDV 525 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEE-VLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 V D ++ +Q+ E + R L+E V + + + K + + L + Sbjct: 526 SDVVATDDGFVVLQVTERNDSGYRSLDETVRDQITRLLRDRKKGVALDAM---LSAGLAS 582 Query: 513 EGKNFRDIGKNL-GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571 +N + ++L G+ L+ + I R + + SG P+E Sbjct: 583 SKQNLEALSRSLAGSKLVKASDIRRNAESAYD---PFLLEALSGMKPSSVSLPVETRSGR 639 Query: 572 VVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + + + P + + + + + + +++ L+ + ++ Sbjct: 640 ALIALESKSYPDGMDPDEARRRLRPLVERAKTEQVIEDYFNALRREATIE 689 >gi|326390841|ref|ZP_08212393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus JW 200] gi|325993100|gb|EGD51540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus JW 200] Length = 301 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 50/385 (12%), Positives = 111/385 (28%), Gaps = 113/385 (29%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + + F ++ + + + V +V + + + + ++ Q I + + Sbjct: 5 IALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTKDIWD 64 Query: 80 ARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 G + + +LD+L++ L Q + + E + + K Sbjct: 65 QDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDITKED 124 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + L + + ++ Sbjct: 125 VKNY---------------------LLINKLFDEYTKDVKV------------------- 144 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + L +++E K+ + Sbjct: 145 ---------------TEEELKKYYEDNKEQF----------------------------- 160 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----D 309 E+ ++ ++K A++ + L KG+ F LA+E + Sbjct: 161 --------------EVVKASHILVADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQG 206 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F + +FSL KKG+ + + +GY I + F EVK Sbjct: 207 GDLGEFPHGVMV-SEFDQVVFSL-KKGEISKPVKTDYGYHIIKSEGV---AIKPFNEVKD 261 Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394 I + + K ++ +KE Y LE+ Sbjct: 262 AIESYLLNDKKNQVIKEKYDALEKA 286 >gi|253701697|ref|YP_003022886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251776547|gb|ACT19128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 341 Score = 133 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 120/357 (33%), Gaps = 78/357 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V +++ + S K +++ + G + + L+K+ LD LV + Sbjct: 51 GEVVARVNGKEIHRNELERSKKI---LMAGQPG--IPPYLLKE--LEKQALDQLVGAELM 103 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +GL+ +A + L K V+ LA G+ E+ ++ + L Sbjct: 104 YQAG--LGLQIKD---LDRMADAKLVQIKSGFKDQQVYEKELANIGMTEQMLREYSRRDL 158 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++V + A ++ + +++ Sbjct: 159 VIANLVNT---------------------------------KLAADLQVTDLEIEKFYAD 185 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + E R S+IL K + E + Sbjct: 186 NPERFEQKEQVRASHILIGCD---------------------SKGTAEEKKKAR------ 218 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +A+ + +K+G F +LA E + + LG F + + ++ F+L K G Sbjct: 219 -DKAERLLKEVKEGADFAKLARENSTCPSATNGGDLGYFPRGKMV-PPFEEAAFAL-KSG 275 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + V+ FG+ + ++ + VS ++ I ++ K E V R ++ Sbjct: 276 EVSDVVETGFGFHLVKQTDRIKAEKVSLATAREKIVAYLKSQKTGEVVASFIGRAKQ 332 Score = 44.2 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 20/261 (7%) Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + ++ + V L LG + ++ R + + F + V KE+ Sbjct: 85 LLKELEKQALDQLVGA---ELMYQAGLGLQIKDLDRMADAKLVQIKS-GFKDQQVYEKEL 140 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKESIPARDRKLEEVLTDVKKD 489 A I EQ+L +D ++ L D ++I++ + E+ V+ Sbjct: 141 ANIGMTEQMLREYSRRDLVIANLVNTKLAADLQVTDLEIEKFYADNPERFEQ-KEQVRAS 199 Query: 490 WK--------TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 T + ++ KA +L+ E KEG +F + + TN + Sbjct: 200 HILIGCDSKGTAEEKKKARDKAERLLKE-VKEGADFAKLARENSTCPSATNGGDLGYFPR 258 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQM 597 F+ V +E G + + K T+ KV ++K ++YL Sbjct: 259 GKMVPPFEEAAFALKSGEV-SDVVETGFGFHLVKQTDRIKAEKVSLATAREKIVAYLKSQ 317 Query: 598 MNKDLLDSVIAYLKSQYSVTV 618 +++ S I K + + Sbjct: 318 KTGEVVASFIGRAKQDAKIEL 338 >gi|187777480|ref|ZP_02993953.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC 15579] gi|187774408|gb|EDU38210.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC 15579] Length = 348 Score = 133 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 50/396 (12%), Positives = 122/396 (30%), Gaps = 88/396 (22%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64 K ++ ++ + L + + F + + ST+ V +K+ KQ + Sbjct: 14 KNAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLEENPRLKQVV 73 Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + G L ++ ILD L++ L Q +++ + + E+ Sbjct: 74 NQMKMQYGEEFEKSEQGKEVLKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEV-- 131 Query: 122 SPLFHGKDNKFSHD--VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 F+ +++D F L G ++ ++ + V+ Sbjct: 132 DKKFNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKSQIIIEKVIN------------- 178 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + +++ + + + Sbjct: 179 ---------------------EATKDVKVEDKDAKKYYNENQSMFT-------------- 203 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 EK + +S ++ + EA + + L + F ++ Sbjct: 204 -EKPNTMNVS------------------------HILVKTEDEAKKVKKRLDSKEDFAKV 238 Query: 300 AEEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+E + G + D + + +L K+G + +H FGY I ++ Sbjct: 239 AKEVSQDPGSKDKGGLLGDINYNDANFDPTFMKAAIAL-KQGAVSNAVHTQFGYHIIKIN 297 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + K + VK+DI ++++ K E + + Sbjct: 298 SKKEYPVKKYDAVKEDIKKELKMEKQKEAYTKKIEE 333 >gi|289579378|ref|YP_003478005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter italicus Ab9] gi|289529091|gb|ADD03443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter italicus Ab9] Length = 301 Score = 133 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 18/266 (6%) Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS---VDYI 195 + + E I EY + ++ ++ + + + + + EN + Sbjct: 29 ATVNGENITNAEYRKAFDQVKAQIESSPQYTKDIWNQDYEGKKFLDVVKENVLDSLIAQK 88 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKD---NYRAPEYKRISYILFDVHEKEKKIEISNDE 252 +L + ++ + + +++ K+ + E K I E K ++++ +E Sbjct: 89 LLLQEALKNNVTVTDKEIEEEYQREKEFNKDITKEEVKNYLLINKLFEEYTKDVKVTEEE 148 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308 L+ YE NK+++ E ++ ++K A + + L KG+ F LA+E + Sbjct: 149 LKKYYEDNKDRF---ETVKASHILVSDEKIAQDIYNRLMKGEDFSTLAKEYSIDTATKDQ 205 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 LG F++ + FSL KKG+ + + +GY I + SF EVK Sbjct: 206 GGDLGEFARGVMV-PEFEQVAFSL-KKGEISKPVKTDYGYHIIKSEG---ATLKSFDEVK 260 Query: 369 KDIANQMRITKASEKVKEDYKRLEEF 394 DI + K ++ + E Y LE+ Sbjct: 261 GDIEAYLLNDKKNQVITEKYDALEKA 286 >gi|147676453|ref|YP_001210668.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum thermopropionicum SI] gi|146272550|dbj|BAF58299.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum thermopropionicum SI] Length = 324 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 65/395 (16%), Positives = 146/395 (36%), Gaps = 89/395 (22%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 + K++R ++A +V+ + S S V +V +K+ ++ Sbjct: 1 MGKSTRQFIAAAVFLVIVA----------VLSGCSSRAVATVNGEKITAGELSQRLEEIK 50 Query: 65 GMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 + ++ GF + ++ ++ L ++ L+ +++ + Q + +G +V I Sbjct: 51 SNLEKQ-GFDFSGDKGKAFMESLRQETLEQMINTRLMLQEAKKLG-PLTPEQVQEIIKPL 108 Query: 123 PLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 +F S + + LA+ ++E+E ++ G + P Sbjct: 109 KE------QFSSAEEYQDFLAQIKMSEEEAAYIL-------NLQEQVTGDVAP------- 148 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 P+ A + ++++++ + + PE ++ +ILF V Sbjct: 149 --------------------------PAEADIKKYYDEHLEEFSRPEQLQVRHILFFVDG 182 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 +K + + ++ A+EA LK GK F +LA Sbjct: 183 GDKGYPV------------------------QHTDAEAREMAEEAIAQLKAGKDFAELAR 218 Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 E+ + D L +FS++ AD+ ++L + +GY I + P Sbjct: 219 EKSEDSGTRADGGLYTFSRDEAVK-EFADAAYALKVGEYTADPVKTEYGYHIIKLEKKIP 277 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + F+EV++DIA + EK E ++ ++ Sbjct: 278 ARQDPFEEVRQDIAGLLLEQARQEKFGEFMQQAKD 312 >gi|189423768|ref|YP_001950945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] gi|189420027|gb|ACD94425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] Length = 305 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KRI + + E + +IS+DEL+ YE+N +K+ + E ++ +++EA + Sbjct: 110 KKRIIVDTYLKKKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILE 169 Query: 289 SLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LKKG F +LA+ + LG F K + + + F L K+G + ++ Sbjct: 170 QLKKGANFEELAKTKSADSSAAKGGDLGWFGKGNMV-PAFEKAAFGL-KEGQLSGIVKSD 227 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FGY I ++ + + T EVK+ I + K + + + L+ Sbjct: 228 FGYHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDLK 274 Score = 43.8 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 27/176 (15%) Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKE---------DYKRLEEFLALGTSMDEI 404 ++ +S E+KK + KA E+++ + + + E L G + +E+ Sbjct: 121 KKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILEQLKKGANFEEL 180 Query: 405 SR--REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 ++ + + + GK FG + + D Sbjct: 181 AKTKSADSSAAKGGDLGWFGKGN---------MVPAFEKAAFGLKEGQLSG--IVKSDFG 229 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 Y +++ A R L+EV +K K + L K+G Sbjct: 230 YHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDL-----KKGAKIE 280 Score = 38.4 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 9/75 (12%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + +V K+ F K I A + K+++D LV Sbjct: 36 DAKVIATVNGAKITSEDFDREVKALPEYIRAM---------ADTPQGKKEMIDTLVMREL 86 Query: 99 LDQFIEDIGLEADHG 113 + Q G++ Sbjct: 87 ILQQAAKDGVDKGKE 101 >gi|306820765|ref|ZP_07454390.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551155|gb|EFM39121.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 245 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 101/260 (38%), Gaps = 27/260 (10%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 ++ + I EK+ D+ K + + + S ++ + + + ++ Sbjct: 6 LATIGDMNITEKDL-DYMKKNMDKRVL----------SQFSGERGEYYLLQELINQKLM- 53 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 +N FE KDN+ + I +L + +S++E++ + Sbjct: 54 -AIDAKTSDLLNNDEFKFEFESMKDNFIS--QYVIKTVL-------DSVTVSDEEVREFF 103 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGS 314 E NK + E + ++ + +A+ ++ ++ G+ F LA+E S + LG Sbjct: 104 ETNKNAFGESETVSASHILVGDLSKAESLYEKIQNGEDFATLAKENSTCPSSANGGDLGY 163 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 F + + D FSL + G + + FGY + +++ K SF+++K ++ Sbjct: 164 FGRGQMVK-EFEDMAFSL-EVGAVSKPVKTQFGYHLILLNDKKADKPKSFEDIKDELRES 221 Query: 375 MRITKASEKVKEDYKRLEEF 394 + K E L E Sbjct: 222 LFAKKQQEAYVAKINSLREK 241 >gi|189425796|ref|YP_001952973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] gi|189422055|gb|ACD96453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] Length = 335 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 52/358 (14%), Positives = 123/358 (34%), Gaps = 78/358 (21%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 V V +P + + K + + + +L+ ++ G + Sbjct: 44 DPVARVNGVAIPAADLQKALN-----AFSKSPSAAQVPPGKEKEVQQFLLNQMLGGELMY 98 Query: 101 QFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + ++ ++ + + F +D ++ L +G++EK+ + + + Sbjct: 99 QVAKATPVKDLDKKIDDAVTKLKARFKT------NDEYLQGLKEQGLSEKDLRELIRRNV 152 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + ++A + ++++K Sbjct: 153 IIENHIEQV---------------------------------IVPKQVVTDAEMKEFYDK 179 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + PE R S+IL + K + Sbjct: 180 NPETFTQPEQVRASHILITLDAKATDAD----------------------------KKKA 211 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 +++ ++ + +K G F +LA+E S LG F K + ++ F++ K G Sbjct: 212 KEKIEDLLKQVKAGADFAKLAQENSGCPSSKQGGDLGYFGKGQMVKP-FEETAFAM-KPG 269 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 D + V+ FGY I ++ K + V+F EVK IA+ ++ K +E + + ++ Sbjct: 270 DVSGVVETQFGYHIIKLTEKKAAAKVAFDEVKAKIADSLKRKKVTEAINATLEDAKKK 327 >gi|253698852|ref|YP_003020041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251773702|gb|ACT16283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 336 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 5/167 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ + + E+ IS+ +++A YEKNKEK+ S ++ ++ EA + Sbjct: 128 KKRVIVEAYLKKKVEESANISDADMKAFYEKNKEKFQSGAQVRASHILVKSEAEAKDVQN 187 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F +LA++ G + LG FSK + F L K+G+ + ++ Sbjct: 188 QLKSGASFEELAKKHSIDGAAQKGGDLGWFSKGSMI-PDFEKVAFGL-KEGETSGIVKTQ 245 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FGY I + +P+ SF++VK I M + E K L+ Sbjct: 246 FGYHIIKKTGDRPAGARSFEDVKDQIKAAMVPERQQETFKNLKDELK 292 Score = 40.7 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 Q+R + K + + K ++ L G S +E++++ I G + + Sbjct: 167 AQVRASHILVKSEAEAKDVQNQLKSGASFEELAKKHSIDG----AAQKGGDLGWFSKGSM 222 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 IP E++ F + + + Y ++ PA R E+V +K Sbjct: 223 IPDFEKVAFGL-----KEGETSGIVKTQFGYHIIKKTGDRPAGARSFEDVKDQIKAAMVP 277 Query: 493 VKTAEEVSSKANQL 506 + E + ++L Sbjct: 278 ERQQETFKNLKDEL 291 >gi|145220375|ref|YP_001131084.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris vibrioformis DSM 265] gi|145206539|gb|ABP37582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeovibrioides DSM 265] Length = 704 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 97/720 (13%), Positives = 211/720 (29%), Gaps = 127/720 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-----WGLSDALFSVSGSSTVV--SVGRQKVPFS 54 + +R + I L +L FL WG+ A F G SV + +S Sbjct: 4 MSNLRDKTH-----IILYILLASFLGLIVFEWGMDFAGFGGRGGRGQNAGSVNGVSISYS 58 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + ++Q + S + + ++ + +V L+Q + G+ G Sbjct: 59 QYDQFYRQFSENYRRSNPGADMSPEIE-LRIQEQAWNTVVDQMLLEQQFQKFGITVQDGE 117 Query: 115 VWGEIARSPLFHGKDN--------KFSHDVFVSRLAREGINEK--EYIDHYTKM------ 158 + I R + + +E + + + Sbjct: 118 ILAAINRPDPPQVIAGNFTDPATAQIDRQKLDAARRDPQNSEMWVQVEEIIRRELKIDKL 177 Query: 159 -----------------LSRTDVVGMFVGGMRPSNLLL----------DQAKRFYFENRS 191 L R M + D+ KR+Y E+R Sbjct: 178 IRALRTMEHVTDLELETLVRQQYTRMAASFIPVPFSFAGDDSKYPVKEDEIKRYYGEHRE 237 Query: 192 V---------DYIVLNNRHVPAIADPSNAV---LTQWFEK--YKDNYRAPEYKRISYILF 237 + DY+ + + + F ++ + R S I Sbjct: 238 LFAEAPSRSSDYVFFPLTPSAQDSLAAQQEFASIRAGFATTRNDTDFVRMQSDRSSSINE 297 Query: 238 DVHEKEKKIEISNDELQA-----------------EYEKNKEKYFSPEIR---TVEQLVF 277 + ++ L Y K K + + ++ Sbjct: 298 TLDR-SDFSPVAGAALFGSSSLRAGSIIGPIADSGTYRLLKIKSVTTARKPVARASHILI 356 Query: 278 -----------PNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPD 322 + +D + LK G F +LA + G + LG F + + Sbjct: 357 RFNPNSRADIQKGRALSDMILRELKAGGNFAELARRYSADPGSAARGGDLGWFRSDRMV- 415 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 AD++F+ +K G + FG I V+ V +I +R + + Sbjct: 416 PEFADAVFA-SKPGAIVGPVQTQFGLHIIKVAGFDRKAV-----VASEIVRTIRPSSETA 469 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + + + A MDE + +K+ ++ G+ + +AAI Y +++ Sbjct: 470 EGIRRRAMVFQMDAKEKGMDESASADKL------PLETTGQFGRHMPIAAIGYNDKIDDF 523 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTAEEVSS 501 F + D + P G Y+ +++ + RKL +++ + + K E + + Sbjct: 524 AFRSSEGDLSD-VIETPKGFYV-MRLTGKNDSGYRKLDDDLKAGITTEIIKEKKGEFIKN 581 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561 + L + + + + + + P+ + Sbjct: 582 RLASLAASPGATLAAIAAADSSFSMFSASDIRWSDGFIPGYGVDRPLVEAMAGMPLARL- 640 Query: 562 CFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P++ Y V +V++ + EK + + + L + + L+ Q + Sbjct: 641 SEPVQIQSGYAVCEVSSRALPEGLDIKTEKAGIAPQVLGLKQEQLFSAYFSALRKQAKIE 700 >gi|189345807|ref|YP_001942336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola DSM 245] gi|189339954|gb|ACD89357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola DSM 245] Length = 701 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 86/691 (12%), Positives = 207/691 (29%), Gaps = 124/691 (17%) Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87 WG++ + FS S V ++VP++ + +K+ + + +GL + Sbjct: 30 WGMNFSGFSGKKGSAAGKVNGKEVPYARYEEIYKEFSENFRRSNPGA-DMSPETELGLQE 88 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-------PLFHGK-DNKFSHDVFVS 139 + + LV L++ E G+ + + F + Sbjct: 89 QAWNVLVDQTLLEEQFEKYGISVQDSEIVASLDGDNPPMVIRQNFVDPATGTIDRASLDA 148 Query: 140 R---LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF--------- 187 L + + + D + L + ++ + S+ LD + + Sbjct: 149 ARRDLKNKDM-WLQIEDIVRRELKVSKLIRALQTMVHVSDRELDAVVKREYTRFSASFIS 207 Query: 188 ---------------------------------ENRSVDYIVLNNRHVPAIADPSNAVLT 214 +R DY+ + L Sbjct: 208 VPLGFAGPDSKFPVKADEIQKYYDSHKELLKQPASRKADYVFFPLVPSAKDSSVVRTELE 267 Query: 215 QWFEK-----YKDNYR-----APEYKRISYILFDVHEKEKKIEISNDELQ---------- 254 + +Y P + Y D + ++ + Sbjct: 268 ALRTEFGTTKNDSDYVKVQSDRPSGVNVQYSRADFSPAAGAVVFNSANAKPGSIIGPVAD 327 Query: 255 -AEYE--KNKEKYFSPEIRTVEQLVF-----------PNQKEADEAFQSLKKGKKFIQLA 300 Y K + + ++ ++ E ++ L+ G+ F LA Sbjct: 328 NGYYRLLKVSKVVTGEPVARASHILLQFNPASREDVAKVRERMVEIYRKLQSGESFEALA 387 Query: 301 EEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ G ++ +G F ++ + A+++FS ++ G T + FG I V+ Sbjct: 388 KQYSQDSGSAVKGGDIGWFGRKSVV-PEFAEAVFS-SRPGALTRPVQTKFGLHIIKVTG- 444 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR---EKIVSI 413 F + N + ++ ++ + +E L T+ ++ +K Sbjct: 445 -------FDQ------NNLVCSEVVRLIRPSTETVESARRLATAFQMQAKDQGFDKSAIS 491 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + V G+ K +AA+ + +++ F + + G Y+ +++ Sbjct: 492 EKLPVAKTGEFGKHTPIAAVGFNDKINAFAFKAAEG-DLSEVIETEKGFYV-MRLTGKND 549 Query: 474 ARDRKL-EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK-NLGASLLTT 531 R L +++ + + K + + L K G I N S++ Sbjct: 550 TGYRLLDDDLKKRITAELVREKKEAALEKQLASLSA---KPGATLETIAAGNKAFSIVKA 606 Query: 532 NQINRMDNENKFFGYD-GISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQE 586 + I D +G D + + SG + P++ Y + ++ V + Sbjct: 607 DDIRWTDGYIPGYGIDRPLVEAISGMKSGLLSRPVKTTGGYALVRLDKRVLAGGVDMKEA 666 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 K + L + + A ++ ++ Sbjct: 667 KAGILPNLLRAKQEQFFAEYFASVRKSAAIE 697 >gi|325281113|ref|YP_004253655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter splanchnicus DSM 20712] gi|324312922|gb|ADY33475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter splanchnicus DSM 20712] Length = 708 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 98/698 (14%), Positives = 234/698 (33%), Gaps = 118/698 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L+ IR + I + + + F+ + DAL S S + + + + V F Sbjct: 4 LQTIRNR-GGLLVSIVIGLALIAFI---VGDALNSGSRIFNSQRNQIGEIAGEGVSIIDF 59 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N + MI +E +++ L + ++ + + ++IG++ ++ Sbjct: 60 QNRVSKNEEMIKAMNNVSSLNEEQQTM-LRENTWQQMIMEQLMQREYDEIGIDVSGDELY 118 Query: 117 GEIARS-------PLFHGKD-NKFSHDVFVSRLAR-----EGINEKEYIDHYTKMLS--- 160 + LF + + + + + I +K Y + K +S Sbjct: 119 DALLGENMSPALRQLFTNPNTGEIDYAGARDYVKKVISAPNNIPQKAYWLNMEKEVSDSR 178 Query: 161 -RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFE 218 + + ++ +A + + YIV N + + SN + +++ Sbjct: 179 KMAKYNAIVAKALYITDAQAQEAAANSADKADISYIVKNYSTIEDSTINVSNGEIKEYYN 238 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DELQAEYEK---------------- 259 K++ ++ PE ++I Y+ FD+ + + ++L E+E+ Sbjct: 239 KHQKSFEQPESRKIVYVNFDIEPSGEDFSETEGAVNDLVKEFEESADPLEFVNLSSDKKA 298 Query: 260 NKEKYFSPEI--RTVEQLVFPNQKE----------------------------------- 282 ++ + EI ++ Q +F N+K Sbjct: 299 DRNYFKQDEIANDSMAQFLFNNEKAVFGPYLENNAYKISRVASVKMLPDSVRARHILIAP 358 Query: 283 -----------ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLAD 327 AD L+KG F +LA+ +Q +++ LG F+ + +D Sbjct: 359 QNQDYAQAKNIADSLAGLLRKGADFEELAKTNSVDQNSAVNGGDLGWFTSRTMVQP-FSD 417 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKE 386 S F K V+ +G + V+++ KP + V+K+++ + T + Sbjct: 418 SAFFAKKND--IKVVLTQYGAHVLQVTDMAKPVKKIQIATVEKEVSPSAKTT------NQ 469 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSID--LPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 Y F +++D +++ + + + + K + G E A ++ + Sbjct: 470 IYNDARTFAIEVSNLDNFNKKVEESGLTKRIATIGKNDKTIAGMESAREMIRQAYMAEEV 529 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + + T+ + + E L +V ++K+ K A+ + + Sbjct: 530 DEVLKTNDGSTIFENGNKFTIAVLTEIDEEGIAPLNKVAGNIKRILIQKKKADLLKKE-- 587 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCF 563 + ++ I + G + N+I+ + G + + S + Sbjct: 588 --LASAKSGSESLLSIARKAGLEVKEANEISFNSFQIPGAGIEPKVIAASSITEQGKISE 645 Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 PI + V N + ++ Q + + Sbjct: 646 PIAGNQGVYLILVNNRTT--EEVTPDMVAQGKQALQQS 681 >gi|322652566|gb|EFY48920.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 141 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 E + Q++G + + L +++L+ L+ A LDQ+ ++ L +V Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSR 140 I +P F D KF ++ + + Sbjct: 120 AIFATPAFQ-VDGKFDNNRYNAI 141 >gi|197116615|ref|YP_002137042.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type [Geobacter bemidjiensis Bem] gi|197085975|gb|ACH37246.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type [Geobacter bemidjiensis Bem] Length = 324 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 KR+ F + E+ IS+ +++A YEKNKEK+ S ++ ++ EA + Sbjct: 109 KKRVIVEAFLKKKVEESGNISDADMKAFYEKNKEKFQSGAQIRASHILVKSEAEAKDIQN 168 Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LKKG F +LA++ G + LG FSK + F L K+G+ + ++ Sbjct: 169 QLKKGASFEELAKKHSIDGAAQKGGDLGWFSKGSMI-PDFEKVAFGL-KEGETSGIVKTQ 226 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FGY I + +P+ SF++VK I M + E K+ L+ Sbjct: 227 FGYHIIKKTGDRPAGARSFEDVKDQIKAAMVPERQQETFKKLKDELK 273 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 Q+R + K + + K ++ L G S +E++++ I G + + Sbjct: 148 AQIRASHILVKSEAEAKDIQNQLKKGASFEELAKKHSIDG----AAQKGGDLGWFSKGSM 203 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 IP E++ F + + + Y ++ PA R E+V +K Sbjct: 204 IPDFEKVAFGL-----KEGETSGIVKTQFGYHIIKKTGDRPAGARSFEDVKDQIKAAMVP 258 Query: 493 VKTAEEVSSKANQL 506 + E ++L Sbjct: 259 ERQQETFKKLKDEL 272 >gi|297564584|ref|YP_003683556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] gi|296849033|gb|ADH62048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] Length = 632 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 107/662 (16%), Positives = 208/662 (31%), Gaps = 147/662 (22%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 ++A FLV + F + G + + S TV+ V + V + EL I + Sbjct: 14 GFLALAFLVGATILFALQGGGNLSGNRSQGPTVMWVNGRPVS--------ELELARIQSR 65 Query: 71 IGFVVNSER-ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + ++ + LD L+ ++ + Q + G V + + Sbjct: 66 DPLLSSNPQGLMKPLLDTFFLEQVILTKAVQQDSSR--IRVSGGEVRKALDD---LKQRA 120 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 + + + L + G + + D L V Sbjct: 121 GATTKEQYDQLLNQIGYTDSQLRDELRDSLKVQKRV------------------------ 156 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + A P+ + +F+ K NY+ + + Sbjct: 157 ----------EEIQKKATPTPEEVKFYFDLNKANYKTEDRVK------------------ 188 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309 Q+V ++K AD+ + LK G F++LA++ K +D Sbjct: 189 ----------------------ARQIVVDDKKLADDLYAQLKAGADFVELAKKNSKVAAD 226 Query: 310 --ISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +LG+ + + P +AD++F L K+G T I Y I V KP Sbjct: 227 QGGALGAETGKSEPGFVTRVIFPSEVADAVFKL-KQGGLTAPIASGGRYYIVKVEEFKPG 285 Query: 360 FTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSMD---EISRREKIVS 412 +F+EVK +A ++ K + ++ E K+ + A T+ + + Sbjct: 286 GDPNFEEVKDRVAEDVKKIKGDQALEAYLLELRKKTQVRFAENTTYKYENPVVAKVGESE 345 Query: 413 IDLPLVDFAGKDVKGKE---------VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 I LP + + +A + Q L ++ ++ +S+ + P Sbjct: 346 IKLPELTQLVFTNQQIPQLIQQGLGDLAVQFFMPQALEQLITREILVSEAKKINQPFVGA 405 Query: 464 MWVQIKESIPARDRKL----EEVLT-----------DVKKDWKTVKTAEEVSSKANQLVL 508 +E + + EEV + K + +E +KA Sbjct: 406 RDQIAREVQAYHTKDITVTDEEVRKYYAENPASFTIPASAEVKGISFKKEDEAKAKAFRE 465 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVK 561 K GK D+ K G ++ ++N VF GP+ V Sbjct: 466 AALKGGK-LEDLAKANGGTVTDYGKVN-----PGTLPPVANRLVFLTKGNFPKGPLGEVS 519 Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVT 617 + SY V V N ++ ++ + + + +A L+ Q V Sbjct: 520 EVVKLDDGSYQVLIVNNRVAEKLKPFEEVADQAREQVLAQKRSKAAQAWVAELRKQTKVE 579 Query: 618 VH 619 + Sbjct: 580 NN 581 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 81/205 (39%), Gaps = 16/205 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAE 301 K I ++++E++ Y +N + P V+ + F ++ +A ++ KG K LA+ Sbjct: 419 KDITVTDEEVRKYYAENPASFTIPASAEVKGISFKKEDEAKAKAFREAALKGGKLEDLAK 478 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK-------GDFTPVIHGSFG-YVIAHV 353 G +++D G + +P +A+ + L K G+ + V+ G Y + V Sbjct: 479 ANGGTVTD--YGKVNPGTLP--PVANRLVFLTKGNFPKGPLGEVSEVVKLDDGSYQVLIV 534 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 +N F+EV Q+ K S+ + L + + +++++ +I Sbjct: 535 NNRVAEKLKPFEEVADQAREQVLAQKRSKAAQAWVAELRKQTKVENNLNKV--LAEITPK 592 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + + P + Sbjct: 593 ETKPASSNPGSGQQTPAQSSPQNKA 617 >gi|194337592|ref|YP_002019386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon phaeoclathratiforme BU-1] gi|194310069|gb|ACF44769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon phaeoclathratiforme BU-1] Length = 705 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 93/715 (13%), Positives = 198/715 (27%), Gaps = 126/715 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 + +R + + + L + WG+ S + + V + +P+S + +K Sbjct: 4 MSSLRDKTHIILYTLLAAFLALIVFEWGMDFTGNSGTKQNQAGEVNGKVIPYSQYEEIYK 63 Query: 62 QELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + G V E + ++ + +V LDQ ++ G+ V + Sbjct: 64 AVTENFRRSNPGAEVMPE--NELEFQEQAWNTVVEQTLLDQQLKKFGITVQDQEVVDALG 121 Query: 121 RS--------PLFHGK-DNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFV 169 + F S E + + L ++ Sbjct: 122 SATNPPQVIRQNFTNPATGAVDRAKLESIRRDPRNKELWLQIEKIVRRELEVNKLLRALQ 181 Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAV-----------LTQW 216 + ++ LD + S +I ++ L Q+ Sbjct: 182 TFVHVTDRELDDIVNRQYSLFSASFIPFPLSFAGPDSNFPVKEEEIKKYYDEHKELLKQF 241 Query: 217 FEKYKDNYR----------------------------------------APEYKRISYIL 236 + K ++ P Y Sbjct: 242 Y-SRKADFVFFPLIPSSKDSLAVRTELETIRAEFSASVNDSDYVKVQSDRPAGINKVYSR 300 Query: 237 FDVHEKEKKI--------------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 D + I++ + + +P + ++ Sbjct: 301 ADFSPAAGDVFFNSPNFKPGTIVGPIADRGEYRLIKIRQISASAPLVARASHILLHFNPA 360 Query: 283 ADE-----------AFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLAD 327 + E F+ L+ G F LA++ L+ +G FSKE + A Sbjct: 361 SREDVARVSQLSALIFKQLQAGTPFDALAKKYSADPVSALNGGDIGWFSKERMV-PQFAA 419 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 ++F A+ G + FG I V+ F + +R + S + + Sbjct: 420 AVFG-ARPGSVIGPVQTQFGLHIIKVTG--------FDTQAALCSEIVRNIRPSTETVDS 470 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 +RL + + + + + G K + I Y+E + F Sbjct: 471 GRRLATAFQINATEKGFDKSAASAKL---PIGKTGDFNKHMPIPQIGYREAVTTFAFKAK 527 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQL 506 + D + G Y+ +++ R L+ E+ + + K + K + Sbjct: 528 EGDLSD-VLETEKGFYV-MRLTGKNDTGYRLLDKELKARITAELVRKKKEALLEKKLAAM 585 Query: 507 VLEYSKEGKNFRDIGKN-LGASLLTTNQINRMDNENKFFGYD-----GISQVFSGPVEMV 560 G I + G ++ + I + +G D G+S + P ++ Sbjct: 586 AA---VPGVTLEKIAASHAGVKVVVADSIRWSNGAIPGYGVDRSLVEGMSAL--VPGKLS 640 Query: 561 KCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613 +G + V+ G EK L + + L IA L+ + Sbjct: 641 APLKTSDGAALVLLSSKTVPAGLNRKAEKSAIAPQLLRAKQEQLFAEYIASLRKK 695 >gi|256751661|ref|ZP_05492536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus CCSD1] gi|256749470|gb|EEU62499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter ethanolicus CCSD1] Length = 301 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 15/210 (7%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD---VHEKEKKIEI 248 + +L + ++ + ++K K+ + + + L E K +++ Sbjct: 85 IAEKLLVQEALKNNITVTDKEIEDEYQKQKEVSKDITKEDVKNYLLINKLFDEYTKDVKV 144 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + +EL+ YE NKE++ E ++ ++K A++ + L KG+ F LA+E + Sbjct: 145 TEEELKKYYEDNKEQF---ETVKASHILVVDEKTAEDIYNRLMKGEDFATLAKEYSVDTA 201 Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F + +FSL KKG+ + + +GY I + F Sbjct: 202 TKDQGGDLGEFPHGVMV-PEFDQVVFSL-KKGEISKPVKTDYGYHIIKSDGVI---IKPF 256 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394 EVK I + + K ++ + E Y LE+ Sbjct: 257 DEVKDTIESYLLDDKKNQVIIEKYDALEKA 286 Score = 37.7 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 93/289 (32%), Gaps = 37/289 (12%) Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 DV I+N E + +++ K + S T + + +GKKF+ Sbjct: 26 DVVAVVNGENITNAEYKKVFDQVKAQIESSPQYT------------KDIWDEDYQGKKFL 73 Query: 298 QLAEEQGKSLSDISLGSFSKE-----YIPDVSLADSIFSLAKKGDFTP--VIHGSFGYVI 350 + +E + + D + D K+ + + Y++ Sbjct: 74 DVVKENVLDSLIAEKLLVQEALKNNITVTDKEIEDEY---QKQKEVSKDITKEDVKNYLL 130 Query: 351 AH--VSNIKPSFTVSFQEVK---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + V+ +E+K +D Q KAS + D K E+ ++ + Sbjct: 131 INKLFDEYTKDVKVTEEELKKYYEDNKEQFETVKASHILVVDEKTAEDIYNRLMKGEDFA 190 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 K S+D D G + +P +Q++F + + D Y Sbjct: 191 TLAKEYSVDTATKDQGGDLGEFPHGVMVPEFDQVVFSL-----KKGEISKPVKTDYGYHI 245 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK--ANQLVLEYSK 512 ++ I + +EV ++ K + + K A + + K Sbjct: 246 IKSDGVI---IKPFDEVKDTIESYLLDDKKNQVIIEKYDALEKAAKIQK 291 >gi|297545519|ref|YP_003677821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843294|gb|ADH61810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 301 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 15/210 (7%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE---KKIEI 248 + +L + S+ + + +++ K+ + + + L E K ++I Sbjct: 85 IAQKLLLQEALKNNITVSDKEIEEEYQREKEFNKDITKEDVKNYLLINKLFEEYTKDVKI 144 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + +EL+ YE NK+++ E ++ ++K A + + L KG+ F LA+E + Sbjct: 145 TEEELKKYYEDNKDQF---ETVKASHILVSDEKIAQDIYNRLMKGEDFATLAKEYSIDTA 201 Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F++ + FSL KKG + + +GY I + SF Sbjct: 202 TKDQGGDLGEFARGVMV-PEFEQVAFSL-KKGQISKPVKTDYGYHIIKSEG---ATLKSF 256 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394 EVK DI + K ++ + E Y LE+ Sbjct: 257 DEVKGDIEAYLLNDKKNQVITEKYDALEKA 286 >gi|171914553|ref|ZP_02930023.1| hypothetical protein VspiD_25280 [Verrucomicrobium spinosum DSM 4136] Length = 518 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 62/349 (17%), Positives = 125/349 (35%), Gaps = 35/349 (10%) Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS---HDVFVSRLAREGINEKEYIDH 154 L + +E G++A + + P+F KD F + F + + G+ + + D Sbjct: 109 VLREELEKNGVQATNEEAREAFRKLPIFQNKDGNFDGNVAEQFQNNIGALGLRDTDVFDV 168 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 + + + G +N + Q F+ I A P++ + Sbjct: 169 LRDWIGFKRLHEIVAGNAVLNNNVSKQLYASTFQTVKAASIPFITDDFKKDAKPTDEEIA 228 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +++E+ K+ ++ + +SY+LF + EK + + E+ + Sbjct: 229 KYYEEKKEAFKTAPKRAVSYVLFAKPDVEKLNAEDTVKARNEFAARVNDFGV-------- 280 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ G K +A+ L L + + L IF Sbjct: 281 -------------AAIAPGAKLEDVAKTAKVELKTEPLFTMEAPPEALKEEPGLVSEIFR 327 Query: 332 L-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV----KE 386 + + + + G+ GY V+ + EVK+ +A Q+ KA E + E Sbjct: 328 IDPQNRPVSDPVEGAKGYYFFSVTQEEEPKQQELAEVKEKVAEQLTSQKAQELMTKAASE 387 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG---KDVKGKEVAA 432 K+LEE + G + DE ++ + LP + G+E+AA Sbjct: 388 ARKKLEESIKGGKTFDEAAKEANLTPQQLPEFSPSNPLMDRTNGREIAA 436 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 16/259 (6%) Query: 367 VKKDIANQMRIT--KASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 K D+ KA + +A G ++++++ K+ PL Sbjct: 252 AKPDVEKLNAEDTVKARNEFAARVNDFGVAAIAPGAKLEDVAKTAKVELKTEPLFTMEA- 310 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 A+ + L+ +F D Y + + + + ++L EV Sbjct: 311 -----PPEALKEEPGLVSEIFRIDPQNRPVSDPVEGAKGYYFFSVTQEEEPKQQELAEVK 365 Query: 484 TDVKKDWKTVKTAE---EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 V + + K E + +S+A + + E K GK F + K + + + + Sbjct: 366 EKVAEQLTSQKAQELMTKAASEARKKLEESIKGGKTFDEAAKEANLTPQQLPEFSPSNPL 425 Query: 541 -NKFFGYDGISQVFSGPVEM-VKCFPIENGL--SYVVFKVTNSKVGPVQEKDKFISYLTQ 596 ++ G + ++ + P K P ENG+ YV+ K + K L Sbjct: 426 MDRTNGREIAAETRTTPAGHFTKPLPTENGVLLVYVISKELRKRDDGASTKANIEKSLDG 485 Query: 597 MMNKDLLDSVIAYLKSQYS 615 MM D+ + + + Sbjct: 486 MMQGDIFRAWFQRRRDEGK 504 >gi|224024283|ref|ZP_03642649.1| hypothetical protein BACCOPRO_01006 [Bacteroides coprophilus DSM 18228] gi|224017505|gb|EEF75517.1| hypothetical protein BACCOPRO_01006 [Bacteroides coprophilus DSM 18228] Length = 711 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 97/722 (13%), Positives = 213/722 (29%), Gaps = 129/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F+ L G V V + + + Sbjct: 4 LQTIR--SKGPLLVIVIGLALFAFIAGDAWKILQPHQGKQDVGEVNGETLSAQDYQKMVD 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 EL + + + + + + ++ + V+ + E +GL + I Sbjct: 62 -ELSEVIKLTNGLNSLNEDQLSNVKDQVWQSYVNNKLIAAEAEKLGLTVTDAELQAIIDQ 120 Query: 120 ------ARSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHY------------- 155 ++P + + F D+ L +Y+++Y Sbjct: 121 GTHPMLMQTPFRNPQTGAFDKDMLKKFLVDYANLNNSQMPAQYVEYYQTLGNFWKFIEKS 180 Query: 156 -TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVL 213 + + + + + + + A + E + + + S+ + Sbjct: 181 LRQSTLAEKYQNLIMRSLISNPVAAEDAFKGRTEQSDMLLAAVPYSSIADSTVQVSDDEI 240 Query: 214 TQWFEKYKDNYRA-PEYKRISYILF-----DVHEKEKKIEISN----------------- 250 + ++ K+ ++ E + I YI D + E+++ Sbjct: 241 RKLYDTRKEQFKQLAETRNIRYIDVRVVPSDADRQAVLKEVTDYSNQLVNTSDDFATFVR 300 Query: 251 -------------------DELQA-------------EYEKNKEKY---------FSPEI 269 ++ A Y + + Y +P+ Sbjct: 301 STGSVVNYADVPVNKTVLPQDVTARLDSVAINEVYGPYYNQADDSYNAFKIIAKTTAPDS 360 Query: 270 RTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIP 321 Q+ + AD F +LK G F +LA++ G++ + IS S+ + Sbjct: 361 IQFRQIQVYANTEDATKTLADSIFTALKGGADFAELAQKYGQTGEANWISAASWEGAEL- 419 Query: 322 DVSLADSIFSLAKKGDFTPVIHG----SFG--YVIAHVSNIKPSFTVSFQEVKKDIANQM 375 D A I +L + ++ + G VI V N K V ++ Sbjct: 420 DAENAKYINAL-----ISQPVNELASLNLGQATVILQVMNKKAMKDKYKVAV-----VKL 469 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + + E + Y + +F+A T+++++ + + L D V + Sbjct: 470 PVEFSKETYNDAYNKFSQFVAQNTTLEDLKKNAEESGYTLIPRTDFSSDEHY--VGGVHS 527 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 + L VF + M V +++ P R + V ++ + + K Sbjct: 528 TREALKWVFAAKVGEVSPLYECGDNDHLMVVSVEKINPKGYRDINSVADMLRAEIRRDKK 587 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 AE++ ++ N +G + I G V Sbjct: 588 AEKIMAQMNGFNSLDQVKGMTDAVSDSVKHVTFSAPAYIAVTRASEPVIG-----AVAEK 642 Query: 556 PVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 PI+ + +V K S LT M + I L+++ Sbjct: 643 TAAGKLSAPIKGNAGVYMIQVYNKDKSAEEFNAKTEESNLTNMAAR-YASQCIYDLRTKA 701 Query: 615 SV 616 V Sbjct: 702 EV 703 >gi|301061946|ref|ZP_07202675.1| SurA N-terminal domain protein [delta proteobacterium NaphS2] gi|300443963|gb|EFK07999.1| SurA N-terminal domain protein [delta proteobacterium NaphS2] Length = 316 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 58/356 (16%), Positives = 115/356 (32%), Gaps = 76/356 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + ++ + Q+ G ++ E+ L K+ LD L+ L Sbjct: 19 SEKVAVVNGDVITRANLDRAMDFAKRQSMQQ-GKPLDEEQL--AALKKETLDKLIGIELL 75 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158 Q + G + D +V F +F + + + + E Sbjct: 76 YQASKKAGNKVDEKQV------DEKFAQFKKRFPNEEALQKTMEEWHVTE----ADMKAE 125 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L + V FV ++ + +++ Sbjct: 126 LKKGMVTEAFV-----------------------------MKNFVDKTTIPEEEVKAYYD 156 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++ PE + S+IL V + E + Sbjct: 157 SHPQFFKQPEQVKASHILIKVKPDATEAEKAEAM-------------------------- 190 Query: 279 NQKEADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 K+ ++A L +G+ F ++A+ E + LG F + + D FSL + Sbjct: 191 --KKIEKAQDKLLEGEDFAEVAKTTSEGPSASKGGDLGYFGRGQMVKP-FEDVAFSL-EP 246 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + V+ FGY + V + KP T+ + VK I ++ + +++K+ L Sbjct: 247 GKVSDVVKTQFGYHLIKVVDKKPETTIPLETVKPRIEQFLKQQEVQKEIKKYIDNL 302 Score = 43.8 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 102/344 (29%), Gaps = 68/344 (19%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 V G + LD+A F L+ + A+ + L Sbjct: 23 AVVNGDVITRANLDRAMDFAKRQSMQQGKPLDEEQLAALKKETLDKL------------- 69 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEAD 284 I L K+ ++ ++ ++ + K+++ + E +T+E+ EAD Sbjct: 70 -----IGIELLYQASKKAGNKVDEKQVDEKFAQFKKRFPNEEALQKTMEEWHVT---EAD 121 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 LKKG + K IP+ + + + F Sbjct: 122 -MKAELKKGMVTEAFVMKN----------FVDKTTIPEEEV--KAYYDSHPQFFKQPEQV 168 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 +++ V + +I KA +K+ E G E+ Sbjct: 169 KASHILIKV--------KPDATEAEKAEAMKKIEKAQDKLLE-----------GEDFAEV 209 Query: 405 SR--REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 ++ E + + + G+ K + + + K V Sbjct: 210 AKTTSEGPSASKGGDLGYFGRGQMVKPFEDVAFSLE-----------PGKVSDVVKTQFG 258 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 Y +++ + P LE V +++ K + +E+ + L Sbjct: 259 YHLIKVVDKKPETTIPLETVKPRIEQFLKQQEVQKEIKKYIDNL 302 Score = 38.0 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 18/156 (11%) Query: 472 IPARDRK---LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK--NLGA 526 P + + L +V D + K + KA +LE G++F ++ K + G Sbjct: 164 QPEQVKASHILIKVKPDATEAEKAEAMKK--IEKAQDKLLE----GEDFAEVAKTTSEGP 217 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----G 582 S + ++ + FS V ++ Y + KV + K Sbjct: 218 SASKGGDLGYFGRGQMVKPFEDV--AFSLEPGKV-SDVVKTQFGYHLIKVVDKKPETTIP 274 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 K + +L Q + + I L+ V + Sbjct: 275 LETVKPRIEQFLKQQEVQKEIKKYIDNLRKGAKVEI 310 >gi|332798476|ref|YP_004459975.1| Foldase protein prsA [Tepidanaerobacter sp. Re1] gi|332696211|gb|AEE90668.1| Foldase protein prsA [Tepidanaerobacter sp. Re1] Length = 300 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 22/215 (10%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----------------YKRISYILFDV 239 ++ S + + +K + Y E + I L Sbjct: 77 IVELEAKKQNITVSEEDVQKEVDKLAEQYGGEEALTQFLEMYGYSLDEIKENIKMNLNVK 136 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 E I+I E+++ +++NK + +PE ++ +++A E Q L+ G+ F +L Sbjct: 137 KLLEPTIKIEESEIKSYFDENKASFDTPEQVKASHILVDTEEKAKEVKQKLQDGEDFAEL 196 Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ S LG FSK + ++ FSL K G+ + + FGY I V + Sbjct: 197 AKTYSTDTSNNQQGGELGYFSKGQMT-PEFEEAAFSL-KAGEISDPVKTEFGYHIIKVED 254 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K + +++E K ++ N + K S + Sbjct: 255 KKEAKEATYEESKDEVKNILLEEKLSTAFSTWIQE 289 >gi|150006852|ref|YP_001301595.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis ATCC 8503] gi|255016117|ref|ZP_05288243.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_7] gi|256842537|ref|ZP_05548039.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13] gi|262384400|ref|ZP_06077535.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B] gi|298377277|ref|ZP_06987230.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19] gi|301308674|ref|ZP_07214626.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3] gi|149935276|gb|ABR41973.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis ATCC 8503] gi|256735893|gb|EEU49225.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13] gi|262294103|gb|EEY82036.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B] gi|298265691|gb|EFI07351.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19] gi|300833198|gb|EFK63816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3] Length = 711 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 97/707 (13%), Positives = 220/707 (31%), Gaps = 126/707 (17%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 + FL S + + + + + V + + M + G Sbjct: 23 FAFIIGDFL---NSGSTYFRQSQERIAEIDGEVVKIQDYQGRVDEMAEMYKMQSGSASLP 79 Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHGK 128 E + + + D +V LD+ +G+ ++ I + +F Sbjct: 80 EE-YMTQIRQSVFDAMVQEVVLDEATAKLGMGVSPEELFDMVQGENISPLIQQMQMFTNP 138 Query: 129 -DNKFSHDVFVSRLAR---------------EGINEKEY----IDHYTKMLSRTDVVGMF 168 F ++ L + + I K + + + + Sbjct: 139 QTGAFDKAALLNFLKQIDSDNIASYPADQQAQLIQAKNFWLFWEKNIKRQRLEQKYTTLL 198 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227 + ++L +A EN + Y + + +P + S + + + + + K+ Y+ Sbjct: 199 SKAISANSLDAKEAYNDNAENSDIIYAMQSYATIPDSTIEVSKSEIEKLYNQRKELYKQK 258 Query: 228 EY-------KRISYILFDVHEKEKKIEISNDELQA------------------------- 255 E I D + + +IE +EL Sbjct: 259 ESKVIKYIAVDIRPSKEDYDKAQAEIESLKEELATSERVADVVNENSEVPYVDAFFTEKA 318 Query: 256 --------------------EYEKNKEKYF-------SPEIRTVEQLVFPNQKEA----- 283 +E +K + F +P+ V ++ + EA Sbjct: 319 LDPEMKQFATTSEVGAVYGPVFENDKYRMFKLVDKTVAPDSVKVSHIMLAGKSEAETTAL 378 Query: 284 -DEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYI---PDVSLADSIFSLAKKG 336 D +LK G F +LA++ + LG F++ + ++FS Sbjct: 379 ADSLMGALKGGANFAELAKKYSADQAAENGGELGWFTEVTALRGVNDDFKKAVFSTPLNE 438 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFL 395 V+ +G + V+ + K IA+ M ++ +S+ Y L +F+ Sbjct: 439 V--AVVKSLYGTHLVKVTEKTGNVE------KYKIADIDMTVSPSSKTYSNIYNELNQFV 490 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 + SM ++ K +L + A + + +I ++ F ++D S Sbjct: 491 SKNNSMAKLEENAKEAGYNL--ISGATVTTDDQLLGSIKNSRPVIRWAF-QNDKGSISEI 547 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 D ++ ++ SI R ++ V ++ + K +++ A +L + Sbjct: 548 FECSD-KFVVAAVEGSISEGYRPVDMVAPALRAELAAQKKGDKI---AQELAAKNL---T 600 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVF 574 + + +G+S+ + +N G ++ + S P++ VF Sbjct: 601 SVEAYAETMGSSVDSVKFVNFGTRRIAGIGIEPNLNAMVSMAQVDQVSAPVKGNNGVYVF 660 Query: 575 KV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 KV +K G + + I L + I + + V + Sbjct: 661 KVYARNKDGKEFNEAEEIRALDASNAYRVGFQAIQSMVNNAKVEDNR 707 >gi|167036601|ref|YP_001664179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039253|ref|YP_001662238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X514] gi|300913893|ref|ZP_07131210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X561] gi|307725422|ref|YP_003905173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X513] gi|320115028|ref|YP_004185187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853493|gb|ABY91902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X514] gi|166855435|gb|ABY93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890578|gb|EFK85723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X561] gi|307582483|gb|ADN55882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter sp. X513] gi|319928119|gb|ADV78804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 301 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD---VHEKEKKIEI 248 + +L + ++ + ++K K+ + + + L E K +++ Sbjct: 85 IAEKLLVQEALKNNITVTDKEIEDEYQKQKEVNKDITKEDVKNYLLINKLFDEYTKDVKV 144 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + +EL+ YE N+E++ E ++ ++K A++ + L KG+ F LA+E + Sbjct: 145 TEEELKKYYEDNEEQF---ETVKASHILVVDEKTAEDIYNRLMKGEDFATLAKEYSVDTA 201 Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F + +FSL KKG+ + + +GY I + F Sbjct: 202 TKDQGGDLGEFPHGVMV-PEFDQVVFSL-KKGEISKPVKTDYGYHIIKSDGVI---IKPF 256 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEF 394 EVK I + + K ++ + E Y LE+ Sbjct: 257 DEVKDTIESYLLDDKKNQVIIEKYDALEKA 286 >gi|309388299|gb|ADO76179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium praevalens DSM 2228] Length = 343 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 56/397 (14%), Positives = 132/397 (33%), Gaps = 83/397 (20%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN-----SWKQEL 64 + I +++L VP + + +V+ + V +++ + ++ Sbjct: 9 VITGIIMLILAVPAAAQDIQEVNETVTEADQEIAAYVNSEEISMQELEQFAGVRNILMQI 68 Query: 65 GMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 +Q+ G V+ A K L+ L++ + Q + L+ + Sbjct: 69 LQTNQEFGSVMLQTEAGQQVVDEFQKLKLEQLITNKLMVQEAKSRKLKVSDEEMNKI--- 125 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F + L ++ LS + S + Sbjct: 126 ----------FDQQI--QALKQQN------------QLSEEQLEAAIQKQGFESMKEYKE 161 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 +FE + + + + E Sbjct: 162 L---------------------------------FFENNMNGFLINKLR---------EE 179 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 K+++S +E++ Y+ NK+++ S + V ++F +Q +A++ +K G F ++A+ Sbjct: 180 VVNKVKVSEEEVKDYYQNNKKQFESEAEKKVSHILFDDQAKAEKVLAEIKAGADFAEMAK 239 Query: 302 EQG---KSLSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +LG S D + D+ L + FG+ + V++ + Sbjct: 240 KHSTGPTADKGGNLGYVSANERGLDQTFRDAAMKLEVGEITNEPVKTQFGFHLIKVTDYR 299 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + F+EVK I + ++ K S+ ++ + L E Sbjct: 300 EAGVRDFEEVKAQIESNLKNKKKSQAFQDFVENLREK 336 >gi|312142429|ref|YP_003993875.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp. 'sapolanicus'] gi|311903080|gb|ADQ13521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp. 'sapolanicus'] Length = 340 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 54/400 (13%), Positives = 135/400 (33%), Gaps = 87/400 (21%) Query: 12 WVAKIFLVVLFVPFLIWGLS------DALFSVSGSSTVVSVGRQKVPFSSFI-----NSW 60 K V+ + FL++ +S + S+ + V +++ N Sbjct: 2 IFIKKVFVLTAIIFLVFSMSAMAQNIENTMSLDQTGPAAVVNGEEISRQELEGFAALNEI 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKI---LDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ +Q+ G V+ + +++ + LD L+S + Q ++ GLE + Sbjct: 62 LMDILQSNQEFGTVLLQTESGQELIEEFMRYKLDQLISTKLMVQEAKNRGLEVSDQEI-- 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++ + G++ N Sbjct: 120 --------------------------------------------NQIIDQQIAGIKQQNN 135 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 L DQ + + + + E D + + + Sbjct: 136 LNDQQLEMALQQEGFASL--------------DEYKSLLIESNMDRFFIEKLRT------ 175 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + ++I IS+ E++ Y +N+ ++ P + ++F +A+E ++ G F Sbjct: 176 ---DITEEITISDAEVEEFYNENQAQFAIPAEYRISHILFNEADKAEEVLTQIESGADFA 232 Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353 ++A+E + + LG + + ++ + + G + + FG+ I + Sbjct: 233 EMAKEHSIGPTAENGGDLGFIAADDRGIDAVFLNAAKELEVGQVSESPVETQFGFHIIKI 292 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 ++ + + F E+K ++ +M +A++ E L E Sbjct: 293 TDYRDGSSREFAEIKDELKEEMLSQRANQLWNEFIIGLRE 332 Score = 41.1 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKN--LGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 + KA + VL + G +F ++ K +G + + + +++ ++ V Sbjct: 215 ADKAEE-VLTQIESGADFAEMAKEHSIGPTAENGGDLGFIAADDRGIDAVFLNAAKELEV 273 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQ 613 V P+E + + K+T+ + G +E KD+ + L + I L+ Sbjct: 274 GQVSESPVETQFGFHIIKITDYRDGSSREFAEIKDELKEEMLSQRANQLWNEFIIGLRED 333 Query: 614 YSVTVH 619 +T++ Sbjct: 334 AEITIN 339 >gi|298207424|ref|YP_003715603.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter atlanticus HTCC2559] gi|83850060|gb|EAP87928.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter atlanticus HTCC2559] Length = 700 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 90/571 (15%), Positives = 192/571 (33%), Gaps = 59/571 (10%) Query: 24 PFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81 F++ + + S G +TV +VG + + + F ++ + S+++G ++ +A Sbjct: 24 SFVLADVIRNGGFSSSKGENTVATVGGENIDRTEFAK----QVDLYSKQLGPNASTMQAV 79 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG----EIARSPLFHGKDNKFSHDVF 137 ++ D V L Q E +G+E ++ ++ +P F ++ FS Sbjct: 80 -----NRVYDAKVREVVLAQQFEKLGIEVSPEQLKATMALQLEGNPTFSDENGTFSEQKL 134 Query: 138 VSRLAREGINEKE-------YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 LA + + Y D T M G+ + L QA Sbjct: 135 QEYLANIKASSPQAYEQWKNYEDQVALAAKETQYFNMIKAGVGATLLEGKQAYLLENNTV 194 Query: 191 SVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 V+Y+ + V + A S + + + + D Y + + Y+LF+ + +E Sbjct: 195 DVEYVKIPWTAVDESEAQVSKDEIKAYIKAHPDKYTVEAGRDLQYVLFEEKASDADVEDM 254 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309 E+ A + N+ E+ + LK K D Sbjct: 255 KAEVAA--------------------MAENRVESGDTLLGLKNSKNLETFVNANSDVRYD 294 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 + K+ +P AD +F+L KG+ ++ + + K K Sbjct: 295 GNYKF--KKNLPK-DFADELFNL-NKGEVYGPYRDGNTLKLSRLEDTKSMP----DSAKA 346 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 + + + + + EE L S+ + RR++ D ++ V G + Sbjct: 347 --RHILISYTGLQTATDVERTEEEAKQLADSLASVLRRDRNKFTDF-ATTYSADKVSGAK 403 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489 + + D + S I + D++ L + ++ Sbjct: 404 GGDLGFFTPGRMVPVFNDYVFQNNEGDLGVVKSQFGFHIIDIQEQTDKEKAVKLATIVRE 463 Query: 490 WKT-VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--Y 546 + KT ++ ++ + + SK +F ++ K+ + + +D G Sbjct: 464 IEASEKTTNDLFAETTKFEIAASKG--DFAELAKSSDLTARPVKGVKALDENIPGVGRQR 521 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 +S F+ + + YVV +VT Sbjct: 522 SIVSWAFNEETNVGDVKRFDVPQGYVVVQVT 552 Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 11/129 (8%) Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFS 331 + N K+A+ + KG ++A+ QG + + + + + + + FS Sbjct: 572 IIKNNKKAEILKSRI-KGNTLAEIAQNQGVQIQTSNALNLKSPTLTGAGNEPEVVGAAFS 630 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMRITKASEKVKED 387 L K+G + + G G + V + +F + + TKA +KE Sbjct: 631 L-KEGATSAPLQGKNGVYVVKVVKRNEATPLDNYKAFSFQESNKRTSGVNTKAYNALKE- 688 Query: 388 YKRLEEFLA 396 +E+ + Sbjct: 689 ATEIEDNRS 697 >gi|187736088|ref|YP_001878200.1| hypothetical protein Amuc_1599 [Akkermansia muciniphila ATCC BAA-835] gi|187426140|gb|ACD05419.1| hypothetical protein Amuc_1599 [Akkermansia muciniphila ATCC BAA-835] Length = 591 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 69/531 (12%), Positives = 160/531 (30%), Gaps = 71/531 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ +RK + +A + LV + + F+ +S + T VSV + + N Sbjct: 1 MLDYLRKHTIVIMAAMALVFVGLMFVGGDVSGGSLTGMFKQTFVSVDGKSYGEKDYNNMG 60 Query: 61 KQELG---MISQKIGFVVNSERARSVGLDKK--ILDN-------LVSGATLDQFIEDIGL 108 + L G ++ + L + +L L + + +GL Sbjct: 61 RTGLSVAFSFPSTFGPLLQDNFSSEENLRELCHLLKTNNPNAAFLAYRGIIRREAGRLGL 120 Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG-----INEKEYIDHYTKMLSRTD 163 + I P F F + + ++ G + E+ +S Sbjct: 121 TPSTAEIDDAICNIPEFQDDKGVFDPQKYDNFISMRGNMGKKLQEELLRGLMEDTISLER 180 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 + + GG+ + + +++ L DP + +++K+K+N Sbjct: 181 IKDVLAGGISVEPGFAEAVAESNSQQITINTAFLEKSAFRPKTDPGEEEIKTFWDKHKEN 240 Query: 224 YRAPEYKRISYILFDV---HEKEKKIEISNDELQAEY---EKNKEKYFSPEIRTVEQLVF 277 Y+ E + + F + K +ISN ++ E + R ++Q + Sbjct: 241 YKNEEARFFTVYTFIPAGDAQAPKPGDISNATMETMNLVENDIWEPLNATNGRNMDQAIS 300 Query: 278 PN----------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-- 325 +K++ A ++ Q + +L + +L Sbjct: 301 EALAKTPGVCKMEKKSYTAVTRKNAPQEINQAINQSASDGRSANLLDVAFSLAGAPALNA 360 Query: 326 -ADSIF---SLAKKG--DFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 AD+ + AK G + + G V+ + I P + ++ + + + Sbjct: 361 DADAKAIEEARAKTGAEQISTMQVLENGQVVLIRLEGITPVKALPYETARNSARADLLES 420 Query: 379 KASEKVKEDYKRLEEFLALGTS----------------------------MDEISRREKI 410 E + + L L + + ++ + Sbjct: 421 MTVESMNKAATELNTELQKAENPVEQFNAIAGKTGAKTASYGPFVNPNVLLSSVNLQNAK 480 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 +L + + + +P E++ + P + DG Sbjct: 481 TQEELQSLLERAMNSRLAPPKELPAPEEVFQAASVIN-PGQMAQPINTGDG 530 >gi|295111179|emb|CBL27929.1| Parvulin-like peptidyl-prolyl isomerase [Synergistetes bacterium SGP1] Length = 303 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 8/172 (4%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAF- 287 + S + K ++ + +E Q Y+++K+++ PE ++ + AD Sbjct: 110 RTQSLAQRAMRNAVKDVKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIAR 169 Query: 288 --QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 LK G F + A++ + LG F+KE + +D+ F+L + GD + + Sbjct: 170 VQADLKAGASFDEEAKKLSLCPSAPQGGDLGEFTKEQMV-PEFSDAAFALKEPGDVSEPV 228 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FG+ I + P+ + F +VK I + + E++K + L++ Sbjct: 229 KSPFGWHIIRLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEELKKA 280 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 14/160 (8%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK------RLEEFLALGTSMDEISR 406 V + + E K RI + +D R++ L G S DE ++ Sbjct: 126 VKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIARVQADLKAGASFDEEAK 185 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + P G + + +P F +P V P G + + Sbjct: 186 KLSLC----PSAPQGGDLGEFTKEQMVPEFSD---AAFALKEPGDVSEPVKSPFG-WHII 237 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 +++ PA+ ++V + +D + E + +K +L Sbjct: 238 RLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEEL 277 >gi|282882421|ref|ZP_06291048.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B] gi|281297741|gb|EFA90210.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B] Length = 249 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + + IE++ E++ Y +KE + + ++ + K+A+E + +K G F Sbjct: 84 YTLGKLLSNIEVTEKEIEDFYNNHKEHFTKDQTVRASHILVDDLKKAEEIYNRIKDGADF 143 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + A+ S LG FSK + D+ F++ + G+ + + FGY I + Sbjct: 144 SKEAKNNSTCPSKENGGDLGIFSKGQMVK-EFEDACFNM-EVGEVSKPVKTQFGYHIIKL 201 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + ++ +E + I +R K E K+ L E Sbjct: 202 VEKNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLREK 242 >gi|313888943|ref|ZP_07822603.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845116|gb|EFR32517.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 249 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 8/173 (4%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + E +Y L + E+ +++++ YE+NK+ + E ++ + +A Sbjct: 75 KTKESMLKTYAL---GKLLATAEVKDEDIKKFYEENKDAFKQGESADASHILVEEEDKAR 131 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E ++ +K G F +LA+E S +LG+F+K + D++F + G T Sbjct: 132 EIYEKIKNGGDFEELAKEYSTCPSKEKGGNLGTFTKGQMVK-EFEDAVFE-NEVGTITEP 189 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + FGY I ++ + +SF EVK I Q+R K E + L++ Sbjct: 190 VKTQFGYHIIKINQKNDARELSFDEVKDRIVEQVRRQKEQEIYNKKITELKDK 242 Score = 41.5 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 12/158 (7%) Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKV---KEDYKRLEEFLALGTSMDEISRREKIV 411 +K F E KD Q AS + ++ + + E + G +E+++ Sbjct: 94 EVKDEDIKKFYEENKDAFKQGESADASHILVEEEDKAREIYEKIKNGGDFEELAKEYSTC 153 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + G KG+ V +++ + V G Y ++I + Sbjct: 154 PSKEKGGNL-GTFTKGQMVKEFED-------AVFENEVGTITEPVKTQFG-YHIIKINQK 204 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 AR+ +EV + + + K E + K +L + Sbjct: 205 NDARELSFDEVKDRIVEQVRRQKEQEIYNKKITELKDK 242 >gi|300813778|ref|ZP_07094088.1| peptidylprolyl isomerase PrsA3 family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512121|gb|EFK39311.1| peptidylprolyl isomerase PrsA3 family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 249 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + + IE++ E++ Y +KE + + ++ + K+A+E + +K G F Sbjct: 84 YTLGKLLSNIEVTEKEIEDFYNNHKEHFTKDQTVRASHILVDDLKKAEEIYNRIKDGADF 143 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + A+ S LG FS+ + D+ F++ + G+ + + FGY I + Sbjct: 144 SKEAKNNSTCPSKENGGDLGIFSRGQMVK-EFEDACFNM-EVGEVSKPVKTQFGYHIIKL 201 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + ++ +E + I +R K E K+ L E Sbjct: 202 VEKNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLREK 242 >gi|126701124|ref|YP_001090021.1| putative foldase lipoprotein [Clostridium difficile 630] gi|254977125|ref|ZP_05273597.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-66c26] gi|255094454|ref|ZP_05323932.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile CIP 107932] gi|255102710|ref|ZP_05331687.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-63q42] gi|255308531|ref|ZP_05352702.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile ATCC 43255] gi|255316205|ref|ZP_05357788.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-76w55] gi|255518867|ref|ZP_05386543.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-97b34] gi|255652046|ref|ZP_05398948.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-37x79] gi|306521784|ref|ZP_07408131.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-32g58] gi|115252561|emb|CAJ70404.1| Peptidylprolyl isomerase PrsA-like [Clostridium difficile] Length = 331 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 64/388 (16%), Positives = 134/388 (34%), Gaps = 81/388 (20%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V + + ++ V +S S S TV +V K+ F + + Q G Sbjct: 4 VITLVIAMILV------VSVTACSSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYG 57 Query: 73 FVVNSERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 + + ILD L++ + + L V Sbjct: 58 KDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKD 114 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 K + + +L + GI+++ D K L+ + Sbjct: 115 AMGK--DEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQS--------------------- 151 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + S+ + ++++ +KD ++ E + +L V + K + Sbjct: 152 -------------NFAKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLS 198 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +K+A+EA + +K G+ F ++A++ + Sbjct: 199 DKEKA-------------------------EAKKKAEEALKEVKSGEDFAKVAKKYSQDT 233 Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S LG FS+ + D+ FS+ KKG+ + ++ +GY I V++ T SF Sbjct: 234 SASDGGKLGFFSRGQMV-AEFEDAAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SF 290 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392 ++ K+ I +Q+ K E++++ K + Sbjct: 291 EDAKETIKDQLLKNKYQEQIEKLTKEAK 318 >gi|228472535|ref|ZP_04057295.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Capnocytophaga gingivalis ATCC 33624] gi|228275948|gb|EEK14704.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Capnocytophaga gingivalis ATCC 33624] Length = 707 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 103/653 (15%), Positives = 222/653 (33%), Gaps = 88/653 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 LE IRK RT + + + F+I G+ + + SV + + F + Sbjct: 4 LEKIRK--RTVFLILVIGLALFAFVISGIFS-RNTTPDQLVIGSVNGDDISYREFSTQVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + IG + + V G +DQ E +G+ +++ I Sbjct: 61 NTTRNMGGSIGQGY---------IVNALWQQAVQGKIIDQQFEKLGISVGKEQIFAMIKR 111 Query: 120 ----ARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKM------LSRTDVVGMF 168 A+ P F + +FS F +A+ +N +Y + R + + Sbjct: 112 VPQYAQDPQFQDEKGQFSIAKFAQVIAQIKKVNPAQYQQWQAEEKSYVDAAKRELYLSLI 171 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227 G+ + + A + + +Y+ L +P S+A + + + +K + Sbjct: 172 RAGLGVTLKDGEDAYHRQADKVTFNYVTLPYTSIPDSEVKVSDAEIDAYVKAHKKQFEQK 231 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + I ++ E I+ LQA ++V+ +Q++A++ Sbjct: 232 EMRNIQFVWVTETASEADIKQVEQSLQALN--------------APRVVYNSQRQANDTL 277 Query: 288 QSLKKGKKFIQLAEE-------QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 F LA + + + SL SK+ +P A+++++L GD Sbjct: 278 ------PGFGALAAKDVPQFVNENSDVPFDSL-YVSKDRLP-ADHAEALYNLP-VGDLYG 328 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK-RLEEFLALGT 399 + Y + + KP+ + + + + + KE+ K + E+ LA Sbjct: 329 PYKEANTYRYTRMLSKKPNAQMRASHILIAYKGSLPGNETITRSKEEAKAKAEDILAKVK 388 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + ++ + + S D G +P +F D L + + Sbjct: 389 AGEDYAALAMVNSDDSSNAPNGGDLDFFSPGMMVPTFNDYVFHGKVGDIGLVETN----- 443 Query: 460 DGSYMWVQIKESIPARDRKLEEVL-TDVKKDWKTVKTAE-EVSSKANQLVLEYSKEGKNF 517 I + R E V + ++ + K + E+ +K + + K+F Sbjct: 444 ----FGFHIIKITDQR----EGVQLATIVRNIEPSKATQNEIYTKLTAFNEQALQHPKDF 495 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 + G ++L N ++ M + G + F+ ++ + Y++ + Sbjct: 496 ASLAAKAGYNVLPANNLDAMAEDIPGLGNNRALVRWAFADDTKVGDIHREDVKDGYIIAQ 555 Query: 576 VTN-------------SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 +T V P+ K+K L++ + L+ +A Q Sbjct: 556 LTKKISEGVASASDARPIVAPILIKEKKAKQLSEKLKGSTLEQ-VAQASGQAG 607 >gi|322420756|ref|YP_004199979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320127143|gb|ADW14703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 323 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 115/360 (31%), Gaps = 77/360 (21%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 + VV V + + K L K+ + E+ + L+ L S Sbjct: 27 GQTGAPVVKVNGSVITKPELDRAVKALLA--QNKVTQALPPEQMKKAA--DSALEQLTSA 82 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155 L Q + + ++ +V + + F + + + L G+ E E + Sbjct: 83 ELLYQEGKKLEIKDLEQQVEQK------YQKNRTSFPTKEEYEKALKATGMTEAEVREMM 136 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K + + V + + A S+A + Sbjct: 137 RKEIVVNNFVD---------------------------------KQFSSKATCSDAEARK 163 Query: 216 WFEKYKDN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +++ K + E R +IL V +K PE + Sbjct: 164 FYDDNKAKLFEKGERLRARHILVSVDQK----------------------GGPEEKK--- 198 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFS 331 +++A+ + ++KG+ F +A+ + S LG F K + + F+ Sbjct: 199 ---KAREKAEALLKRVQKGEDFAAVAKVESTCPSRANGGELGVFGKGQMT-PPFEKAAFA 254 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L KG+ + V+ FGY I + F++VK IA ++ + + V L Sbjct: 255 LKGKGELSKVVETEFGYHIIKLEERIAPSNDRFEDVKFQIAQYLKKEQTRKAVAAFLAEL 314 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 + ++ KA L L+ ++G++F + K N F Sbjct: 195 EEKKKAREKAEAL-LKRVQKGEDFAAVAKVESTCPSRANGGELGVFGKGQMTPPFEKAAF 253 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAY 609 + + +E Y + K+ + + Q + K+ + + +A Sbjct: 254 ALKGKGELSKVVETEFGYHIIKLEERIAPSNDRFEDVKFQIAQYLKKEQTRKAVAAFLAE 313 Query: 610 LKSQYSVT 617 L+ + + Sbjct: 314 LRHKAKIE 321 >gi|15896462|ref|NP_349811.1| peptidylprolyl isomerase [Clostridium acetobutylicum ATCC 824] gi|15026287|gb|AAK81151.1|AE007817_5 Parvulin-like peptidyl-prolyl isomerase, PRSA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] Length = 353 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 52/391 (13%), Positives = 108/391 (27%), Gaps = 89/391 (22%) Query: 15 KIFLVVLFVPFLIWGLSDALFS----VSGSSTVVSV-GRQKVPFSSFINSWKQELGMISQ 69 +I +L F + ++ S V ++ G Q + K + + Sbjct: 26 QIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVEQLKS 85 Query: 70 KIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PLF 125 + G L K+ IL +L+ + +D + + + + Sbjct: 86 QYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQY 145 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + S F S+L++ G E+ D ++ V Sbjct: 146 QQEFKTESE--FKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVV---------------- 187 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 S+ ++++ +K++Y Sbjct: 188 ------------------KDVKVSDDEAKKYYDSHKNSYT-------------------- 209 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 SP + ++ +KEA + KG+ F +A++ Sbjct: 210 -------------------QSPNTVHLAHILVKTEKEAKAVKARIDKGEDFATVAKQVST 250 Query: 306 SLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG + + D + + L + +H FG+ + Sbjct: 251 DGSKEKGGDLGDIQENDSNYDKTFMAAALKL-NDNQVSAPVHTQFGWHVIKCIKKTEYPV 309 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F VK DI + TK ++ K+ E Sbjct: 310 KDFNSVKDDIKQTVLSTKQKSVYQKTLKKWE 340 >gi|302871263|ref|YP_003839899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor obsidiansis OB47] gi|302574122|gb|ADL41913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor obsidiansis OB47] Length = 335 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 58/390 (14%), Positives = 123/390 (31%), Gaps = 84/390 (21%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 R + ++++ +I + + V + V V +K+ F +++ ++ Sbjct: 4 RTKIAIFFITAIVLLII---VIAVTPEMVKYVDENRAVAIVNGEKITKKEFAINYRSQIN 60 Query: 66 M--ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + + ++ + + +LD L+ Q + + Sbjct: 61 YYGLDKAFLSQKVGDKTYEQQIKENVLDGLIVRQIELQQARKRNITLTSTEKKAIDQQIE 120 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 K + S F L G E EY D ++ +V Sbjct: 121 --QYKSDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY-------------- 160 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 V S+A + ++ +K ++ + Sbjct: 161 ----------------DEVTKSQKASDAEIESYYNSHKSDF----------VEVKASHIL 194 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K+ S +E +++A+E Q +K G+ F +LA++ Sbjct: 195 FKVNDSKEE------------------------AAKKRKAEEVLQMIKSGQSFEKLAQKY 230 Query: 304 GKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG F K + D+ FSL G+ + V+ S+G+ I V++ K Sbjct: 231 SEDETTKQKSGDLGYFRKGQMVK-EFEDAAFSL-NIGEISSVVKTSYGFHIIKVTDRK-- 286 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYK 389 +S EVK +I + + K E + + Sbjct: 287 -QLSLNEVKDEIKSTIESQKKDEYYQSLVE 315 >gi|255657457|ref|ZP_05402866.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile QCD-23m63] gi|296449052|ref|ZP_06890842.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296262145|gb|EFH08950.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] Length = 331 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 63/388 (16%), Positives = 134/388 (34%), Gaps = 81/388 (20%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V + + ++ V +S + S TV +V K+ F + + Q G Sbjct: 4 VITLVIAMILV------VSVTACNSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYG 57 Query: 73 FVVNSERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 + + ILD L++ + + L V Sbjct: 58 KDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKD 114 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 K + + +L + GI+++ D K L+ + Sbjct: 115 AMGK--DEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQS--------------------- 151 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + S+ + ++++ +KD ++ E + +L V + K + Sbjct: 152 -------------NFTKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLS 198 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +K+A+EA + +K G+ F ++A++ + Sbjct: 199 AKEKA-------------------------EAKKKAEEALKEVKSGEDFAKVAKKYSQDA 233 Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S LG FS+ + D+ FS+ KKG+ + ++ +GY I V++ T SF Sbjct: 234 SASDGGKLGFFSRGQMV-AEFEDAAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SF 290 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392 ++ K+ I +Q+ K E++++ K + Sbjct: 291 EDAKETIKDQLLKNKYQEQIEKLTKEAK 318 >gi|89892936|ref|YP_516423.1| hypothetical protein DSY0190 [Desulfitobacterium hafniense Y51] gi|219666202|ref|YP_002456637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium hafniense DCB-2] gi|89332384|dbj|BAE81979.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536462|gb|ACL18201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium hafniense DCB-2] Length = 315 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 104/386 (26%), Gaps = 97/386 (25%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K + L + + G S S G V + + F +G Sbjct: 6 KGIIAALVLTLALTGCS----SAGGDQWAAKVNGETITEQDFAARVSNVQKAYE-GMGMD 60 Query: 75 VNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++++ + + ++L+ +++ + Q + + L+ + + + G Sbjct: 61 FSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVNDPSILEQEKNIIQMVG----- 115 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + L ++ + E E +++ Sbjct: 116 DESQYQEWLKQQAMTEDEVKNYFAL----------------------------------- 140 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + + +FE ++ Y Sbjct: 141 ------SAEITKDVTVTPEQEKTFFENNQELY---------------------------- 166 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS- 311 E ++ + EA L G F +LA+E+ S Sbjct: 167 -----------GGKGEEVQARHILVETEDEAKAIIAQLDGGADFSELAKEKSTDTGSQSS 215 Query: 312 ---LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 LGSF K + ++ F+ + FGY I V + K + ++ VK Sbjct: 216 GGYLGSFGKGKMV-PEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVK 274 Query: 369 KDIANQMRITKASEKVKEDYKRLEEF 394 +A ++K + L E Sbjct: 275 SQVAEDALADAKAQKFGGYFDELREK 300 >gi|78222035|ref|YP_383782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] gi|78193290|gb|ABB31057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] Length = 339 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 60/361 (16%), Positives = 123/361 (34%), Gaps = 76/361 (21%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 S ++ V V + + + K L +Q +N E ++ +++ L+ L++ Sbjct: 43 SATTAVARVNGVDITRAELERAKKIILSR-NQMASAAMNDEMSKK--VEEAALNQLIAKE 99 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L Q + ++ ++ ++A F + + + L + EKE Sbjct: 100 LLFQAGKKQEIKDLDKKIQEKVAEHKARFKSQAD------YEKALKEMDMTEKEVETFTR 153 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + + +++ + A ++ ++ Sbjct: 154 EDMVIGNLIET---------------------------------KIVANTKITDDEAKKF 180 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + KD +R E R S+IL +K E Sbjct: 181 YNDNKDKFRREEAVRASHILVSADQKASPEE----------------------------K 212 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333 +++A+ + LK G F +LA+++ S LG F K + + F+L Sbjct: 213 KKAKEKAEALLKQLKGGADFAELAKKESSCPSSAQGGDLGFFGKGQMV-PEFEKTAFNL- 270 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K G+ + V+ FGY I ++ K + TV F+E K+ I + K + E L + Sbjct: 271 KPGEVSDVVETQFGYHIIKLAEKKDAETVPFEEAKERIVQFLTQQKVQAGIGEYVDELRK 330 Query: 394 F 394 Sbjct: 331 K 331 >gi|222056791|ref|YP_002539153.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] gi|221566080|gb|ACM22052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] Length = 320 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 116/361 (32%), Gaps = 75/361 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 ++ V + ++E I +++ +E L K LD L+ + Sbjct: 26 TAVAAIVNDDVITTLE----VQKETDQIIKEMEKKGPAETPDKAALRKIALDRLIDKKLV 81 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q I+++ ++ + I K N + + V+ LA +G++ ++Y + L Sbjct: 82 EQKIKELDIKVPEEELRQSIEDV----KKQNNLTQEALVAALAGQGLSFEQYKTQLREQL 137 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ V + + +++E Sbjct: 138 ERLRLMSQ---------------------------------EVRSKIQVGEREIREYYEA 164 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + Y E+ R +I F V + + E Sbjct: 165 NHNRYGEEEFFRARHIFFKVGKDAPESEA----------------------------AKV 196 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335 A + Q + GK F +LA + LG+F K + ++ S K Sbjct: 197 MTTATQVLQEARSGKDFAELARQFSDDPAAKKDGGDLGTFKKGDMIGEI--EAAVSGMKP 254 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + + + G+ I + F+EVK +I + + K+ E+ + L + Sbjct: 255 GEVSDPVKTAAGFHIIKLEERSKGKPRPFEEVKAEIEDLLYKKKSEERFNQWVNDLRKGA 314 Query: 396 A 396 A Sbjct: 315 A 315 >gi|326334983|ref|ZP_08201183.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692788|gb|EGD34727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 707 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 86/738 (11%), Positives = 211/738 (28%), Gaps = 153/738 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 LE IRK RT + + + F+I G+ + V K+ + F + + Sbjct: 4 LEKIRK--RTVFLILVIGLALFAFVISGIFS-RTKTPDQLVIGEVNGDKISYLEFSSQVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 L + IG + + + LDQ E +G+ ++ I Sbjct: 61 NTLRNMGGSIGQAY---------VVNALWQQTIQSKILDQQFEKLGISVGKDQILSIISK 111 Query: 120 ----ARSPLF-------------------------------HGKDNKFS---HDVFVSRL 141 A++P F + + F ++++S + Sbjct: 112 VPQYAQNPQFLDDKGVFSPAKFGQVIAQIKQSNPTVYKQWQQEEKSYFDTAKREIYLSLI 171 Query: 142 AR-EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD----------QAKRFYFEN- 189 G+ K+ D Y + + + + + + + +A + ++ Sbjct: 172 RAGLGVTLKDGEDAYHQENDKVTIKYVTLPYSSIPDEQIKISDNEIQDYVKAHKKQYQQK 231 Query: 190 --RSVDYIVLNNRHVPAIADPSNAVLTQW------FEKYKDN------Y-RAPEYKRISY 234 R++ +++ + P L + + + P + Sbjct: 232 DMRNLQFVLASEVASPEDKKAIEQDLKALNNPRILYNNQTQKSDTLPGFSQVPLKDIAEF 291 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----------------------IRT 271 + + + +S D+L + E Sbjct: 292 VNENSDTPFDSLYVSKDKLPVNFADTLYNLSIGELYGPYQDGNAYKYTRMLSKIPNGEVR 351 Query: 272 VEQLVFP-----------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 ++ + +A+ +K G + LA+ S Sbjct: 352 ASHILIAYQGSLPGNDAITRTKEEAKAKAEGILAQIKAGGDYTALAQANSDDASNAQNGG 411 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 L FS+ + D +F AK GD ++ +FG+ I +++++ + Sbjct: 412 DLDFFSRGMMVQP-FNDYVFH-AKVGDI-GLVETNFGFHIIKITDLREGVKL------AT 462 Query: 371 IANQMRITKA-SEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 I + + A + V + + + ++++ ++ + + Sbjct: 463 ITRNIEPSAATRDAVYTKITEFDAQAIKNPKEFAALAQKAG-----YDVLPANNLEALAE 517 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 ++ + L+ F KD + + DG Y+ Q+ + I A E V Sbjct: 518 DIPGLGDNRPLVKWAFEKDTKVGDVRRFDIKDG-YIVAQLTKKIEAGLASPSEARAQVAP 576 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQINRMDNENKFFGY 546 K A+++ K +G + + + G + + ++ + G Sbjct: 577 ILIKEKKAKQLIEKM---------KGSSLEQVAQAAGEANNIQQAEGVSIKNPILPGQGA 627 Query: 547 DG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604 +G P V + + YV+ + + ++ L Sbjct: 628 EGSVAGAALVLPPNKVSKPIVGDNGVYVIQVIQKDVAPALPNYSSYMGILRNQKLNRASQ 687 Query: 605 SVIAYLKSQYSVTVHDNL 622 + + L+ + + Sbjct: 688 DLFSALEQTAEIKDDRAM 705 >gi|332882479|ref|ZP_08450097.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679539|gb|EGJ52518.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 705 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 93/597 (15%), Positives = 215/597 (36%), Gaps = 62/597 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 LE IR S+T + + F+I + FS + + +V + VP +F Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHQPTEIGTVNGEDVPIDAFRLQV 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q G + E A+ + + V L+Q IE +GL + ++ +A Sbjct: 62 EN---AVHQANGQASSIEAAKY------VWEQNVQQILLNQQIEKLGLSVEKDQIISILA 112 Query: 121 RSPLFHGKD-----NKFSHDV---FVSRLAREGINEKEY------IDHYTKMLSRTDVVG 166 ++PL F +++ L + Y D + + Sbjct: 113 KTPLAQNPQFVNEYGVFDPSKFTAYLNTLKSNN--PQAYAQWKMQEDAIIEGAKQQMYFS 170 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYR 225 + G+ +N + A + + Y+ L + + S++ + + +K++ ++ Sbjct: 171 LIRAGLGVTNAEAEIAYHQEKDMADISYVALQYSSIDDKNINVSDSEIKDYIKKHEKQFK 230 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 Y+ I YI+ + + + + K PE +VF NQ A++ Sbjct: 231 QEAYRNIQYIVVNEKPSAADTQAEKEAI--------NKLLQPE------IVFNNQTHAND 276 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + K + + + D F + + AD++F+L G Sbjct: 277 TIAGFAQTKNVKEFVDRHSDTPYDT---LFVSKEDLRSAYADTLFALP-VGKVFGPYEED 332 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 ++ + P+ V I + ++A+ K + A + + Sbjct: 333 GNLKLSRMIAKDPNGAVK----ASHILIAYKGSQAATPNTTRTKEEAKAKAESLLAEAKA 388 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP--DGSY 463 ++ D G + +G ++ +K + + F + + T+ + D Y Sbjct: 389 AGADFAALASENSDEPGANYRGGDLGF--FKRGAMVKPFEQFVFANPVGTIGIVETDFGY 446 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 V++ + + L + V+ + T E+ SK + ++ S+ K+F +I K+ Sbjct: 447 HVVKVTD-KAPTVQ-LATITRKVEP---SEATLNELFSKVSNFEMKASQNPKDFSNIAKS 501 Query: 524 LGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 ++L + +++ D++ G + +F+ ++ NG +Y+V ++ Sbjct: 502 SDLTVLRADNLHKNDDQIIGLGANRQIVQWLFNKETKVGDLKKFTNGGNYIVAQLVK 558 >gi|260685020|ref|YP_003216305.1| putative foldase lipoprotein [Clostridium difficile CD196] gi|260688678|ref|YP_003219812.1| putative foldase lipoprotein [Clostridium difficile R20291] gi|260211183|emb|CBA66654.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile CD196] gi|260214695|emb|CBE07344.1| putative foldase lipoprotein (late stage protein export lipoprotein) [Clostridium difficile R20291] Length = 321 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 126/365 (34%), Gaps = 75/365 (20%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-----GLDKKIL 90 S S TV +V K+ F + + Q G + + IL Sbjct: 11 SSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLIL 70 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150 D L++ + + L V K + + +L + GI+++ Sbjct: 71 DQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKDAMGK--DEKYKEQLKKLGIDDEF 125 Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 D K L+ + + S+ Sbjct: 126 LRDQQEKDLAMQNYQS----------------------------------NFAKKTKISD 151 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + ++++ +KD ++ E + +L V + K + Sbjct: 152 EEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLSDKEKA------------------ 193 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 +K+A+EA + +K G+ F ++A++ + S LG FS+ + D Sbjct: 194 -------EAKKKAEEALKEVKSGEDFAKVAKKYSQDTSASDGGKLGFFSRGQMV-AEFED 245 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + FS+ KKG+ + ++ +GY I V++ T SF++ K+ I +Q+ K E++++ Sbjct: 246 AAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SFEDAKETIKDQLLKNKYQEQIEKL 303 Query: 388 YKRLE 392 K + Sbjct: 304 TKEAK 308 >gi|108760198|ref|YP_628739.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622] gi|108464078|gb|ABF89263.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622] Length = 349 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 56/369 (15%), Positives = 103/369 (27%), Gaps = 92/369 (24%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 V SV + + + F +EL + V + +LD + L Q Sbjct: 55 VVASVNGEVLSRADFEQELWRELA-----LTDVSQRTLEDVEPFKRALLDTYIHRMLLLQ 109 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + V + R + F LA+ ++ E L+ Sbjct: 110 EARKHNVTVTPEEVDRGVLRL------SGDYPAGNFNEVLAQGQLSMAELRSREASRLTI 163 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + HV + + L W+ ++ Sbjct: 164 EKLF---------------------------------ASHVYSRVAVTEEELRAWYGAHE 190 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 ++ PE Q+V Sbjct: 191 KDFHEPEQV----------------------------------------HAAQIVVKGLD 210 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 EA LK GKKF LA S LG F + +P + + +F L G Sbjct: 211 EARRLQTQLKSGKKFADLARRYSLSADAKVGGDLGFFPRGQMP-PAFDEVVFKLG-VGQV 268 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFL 395 + V+ +G+ + V KP+ F EV+ + ++ K A E +++ ++ + Sbjct: 269 SDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQETFEQELRQKAQVQ 328 Query: 396 ALGTSMDEI 404 ++ I Sbjct: 329 VNEATLQAI 337 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 ++ +RL+ L G +++RR + + D + G +G+ P ++++F++ Sbjct: 210 DEARRLQTQLKSGKKFADLARRYSLSA-DAKVGGDLGFFPRGQ---MPPAFDEVVFKL-- 263 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + V + + ++ E PAR R+ EV + V+ K ++ + + Sbjct: 264 ---GVGQVSDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQETFEQE 320 Query: 506 LVLEYS 511 L + Sbjct: 321 LRQKAQ 326 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 6/145 (4%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 + + + +A +L + K GK F D+ + S + Sbjct: 197 EQVHAAQIVVKGLDEARRLQTQL-KSGKKFADLARRYSLSADAKVGGDLGFFPRGQMPPA 255 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLL 603 VF V V + + +F+V K +E + L + Sbjct: 256 FDEVVFKLGVGQV-SDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQ 314 Query: 604 DSVIAYLKSQYSVTVHDNLIQRYLD 628 ++ L+ + V V++ +Q Sbjct: 315 ETFEQELRQKAQVQVNEATLQAIRG 339 >gi|154491017|ref|ZP_02030958.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC 43184] gi|154088765|gb|EDN87809.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC 43184] Length = 712 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 87/706 (12%), Positives = 211/706 (29%), Gaps = 123/706 (17%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 + FL S + + TV V + + F + + M + G Sbjct: 23 FAFIIGDFL---NSGSTYFRQSQETVAEVDGEVIKIQEFQDRVDEMTEMYKMQTGSTSLP 79 Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHGK 128 E + + + D +V L++ ++G+ ++ I + +F Sbjct: 80 EE-YQTQIRQSVFDGMVQDIVLNEATSELGMGVGPEELFDMVQGENISPMIQQMQMFVNP 138 Query: 129 -DNKFSHDVFVSRL---------------AREGINEKEY----IDHYTKMLSRTDVVGMF 168 F ++ L + + +++ + + + Sbjct: 139 QTGAFDKTALLNFLKTIDDDNIANYPADQQAQLLQGRQFWMFWEKNIKRQRLEQKYTTLL 198 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227 + + L A + + Y + + +P S + + + + + K+ ++ Sbjct: 199 SKAVSANKLDAKDAFDGSAVSSDIVYAMQSYASIPDSTIQVSKSDIEKLYNQRKELFKQK 258 Query: 228 ------------------------EYKRISYILFDVHEKEKKIEIS-------------- 249 E + + L + + + Sbjct: 259 EGKVIKYIAVDIRPSKEDYDKASAEIESLKSELATSEKVADLVTENSEIPYMDAFFTENA 318 Query: 250 -NDELQAE-------------YEKNKEKYF-------SPEIRTVEQLVFPN-------QK 281 + E++ +E +K + F +P+ V ++ N + Sbjct: 319 LDPEMKQFVKTANVGDVYGPVFENDKYRLFKLVDKTVAPDSVKVSHIMLANTGDEAAIKA 378 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYI---PDVSLADSIFSLAKK 335 +AD LKKG F+ LA+E + LG F++ + ++FS Sbjct: 379 KADSLLNVLKKGGDFVALAKEYSADQAAEKGGELGWFTEATALRGVNDDFKKAVFS-TPV 437 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 D++ ++ +G I V++ + +V M ++ +++ Y L +F+ Sbjct: 438 NDYS-IVKSLYGTHIIKVTDKTTNVDK--YKVAD---IDMTVSPSTKTYGNIYNELNQFI 491 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 + ++D++ K +L + + + +I ++ F + Sbjct: 492 SKNQNIDKLDDAAKEAGYNL--LSNVTVTANDQLLGSIKNSRPVIRWAFQNN--KGDISE 547 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + D ++ I+ ++P R LE V +K + K E++ A L + Sbjct: 548 IFECDDKFVIAAIQGTLPEGYRSLESVTPMLKSELIAQKKGEKI---AQDLSAKNLSSVD 604 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 + + S+ + R ++ + S + P+ VFK Sbjct: 605 AYAQAMNSSADSVKFVSFATR--RIAGIGVEPKLNAMVSLAQKDQLSAPVVGNNGVYVFK 662 Query: 576 VTNSKVGPVQEKDKF-ISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 V + I L I L ++ V + Sbjct: 663 VYEQNKDAKNYDEAAEIKALDASNAYRFGFQAIQSLVNKADVEDNR 708 >gi|302343059|ref|YP_003807588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] gi|301639672|gb|ADK84994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus baarsii DSM 2075] Length = 317 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 55/389 (14%), Positives = 123/389 (31%), Gaps = 94/389 (24%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R R + A L+++ + D ++ V +V +K+ F Sbjct: 1 MRMNVRPFFALACLLLVSTAAALLVACD---RSGSTAWVAAVDDEKISLHQFNQK----- 52 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + +G +++ + GL K +LD ++ + + +G+E + E R Sbjct: 53 ---AAFMGLGADAKSLDA-GLRKAVLDEMIQRLVILRQAAKLGVELSDQELDSEEERI-- 106 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 + F + G++ +++ D + L + + Sbjct: 107 ----HHGMDAAAFREGMLARGMDYQDWRDELARDLLVRKTIDLV---------------- 146 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + + + +++++KD + PE Sbjct: 147 -----------------LTPRISVDQSEIVAYYDEHKDQFSRPEQI-------------- 175 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 LV P++K ADE + +G+ + A+E G Sbjct: 176 --------------------------LALHLVLPDKKMADELVARMDRGQDMLAAAKEMG 209 Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 +L SD + ++P L ++F+ A+ G H +GY + V +P+ + Sbjct: 210 VALGSDGRPDWLGRGHMPG-KLEKAVFA-ARPGRPAGPFHSDYGYHVVWVIEKRPAMVLP 267 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 E I + + K + L+ Sbjct: 268 LAEAAGRIQDALAKEKKDALTVGWLEELK 296 >gi|85858737|ref|YP_460939.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB] gi|85721828|gb|ABC76771.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB] Length = 322 Score = 127 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 51/354 (14%), Positives = 108/354 (30%), Gaps = 70/354 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + +++ I + +L+ ++ + Sbjct: 27 DRIVAFVNDEIITLHELNTAFEPYRKKIDDSYKG--TDKDRIMSETRLTLLNRMIDNLLI 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q + + V I + K + D F LAREG N ++Y + Sbjct: 85 EQEAKKSAIAVSDEEVMASIRDN----LARRKTTMDAFQQSLAREGTNFEDYKKEMRDSM 140 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 RT ++ R V + ++ + +++ Sbjct: 141 VRTRLL-----------------------RREVR----------SKVTVNDEEIGEYYRL 167 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +++ Y + ++ +IL E Sbjct: 168 HREEYEGKDAVKLKHILLLFPGNMD----------------------------ENAKAKL 199 Query: 280 QKEADEAFQSLKKGKKFIQLAE--EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 Q +A E + L+ G+ F LA QG + SD F ++ + + FSL + Sbjct: 200 QADAMEILKRLRMGESFDSLAARFSQGPAASDGGNVGFVEKGAMLPEVEKAAFSLDRD-K 258 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +I G+ I V + + +EV+ +I +++ K +K L Sbjct: 259 ISDLIESPVGFHIIKVIDRRGPGLKPIEEVRAEIKSRLEDGKIEKKFDSWISEL 312 >gi|223939789|ref|ZP_03631660.1| hypothetical protein Cflav_PD1192 [bacterium Ellin514] gi|223891565|gb|EEF58055.1| hypothetical protein Cflav_PD1192 [bacterium Ellin514] Length = 561 Score = 127 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 73/524 (13%), Positives = 172/524 (32%), Gaps = 62/524 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS---GSSTVVSVGRQKVPFSSFI 57 M IR+ + W+ + + + F+I+G +++ SS ++ + + FI Sbjct: 1 MFGTIRRH-QAWLWIVIAALTIISFVIFGPTNSRIGSGLLGNSSQFGTINGKPITQEQFI 59 Query: 58 NSWKQ-ELGMISQKIGFVVNSERARSVGL--DKKILDNLVSGATLDQFIEDIGLEADHGR 114 N+ ++ +LG + + A +G D++ L + E+ G+ Sbjct: 60 NASREVQLGYFISNGRWPSSDPNASRMGYNEDRQTYQRL----FVIAKQEEFGIHPSSQA 115 Query: 115 VWGEIARSPLFHGKDNKFSHDVF-VSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGM 172 V K S D F L + ++ L ++ + G Sbjct: 116 VAEMAREM------LGKISLDQFIDQGLKPNNFDANDFQRFLQHELGIQQLLSVAGLSGK 169 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + + S + + + A A + +++ ++ +Y PE ++ Sbjct: 170 LVTPQEAKDLYIKEHQEISALLVNFSLSNYVAGVTVKPADVQEFYNRHASSYTLPERVQV 229 Query: 233 SYILFDVHEKEKKIEIS----NDELQAEYEKN----KEKYFSPEIRTVEQL--------V 276 +Y+ F++ + + + ++++ Y++ + +PE + + Sbjct: 230 NYVEFNLSNYLSQAQSRMTNIDQDVESVYKQYGTNAYREAKTPEEAKSKIKEEMIRETAL 289 Query: 277 FPNQKEADEAFQSL-----KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328 ++ A + L K F LA+ +G +S S G + S + Sbjct: 290 MDARRAAGAFAEELDKLPQKNAAAFADLAKAKGLKVSVTAPFSRGEGPQGMDVPESFTQN 349 Query: 329 IFSLAKK----GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 F L ++ G ++ + PS F+ +++ ++N R +A + Sbjct: 350 AFGLTEQEPFAGPIVAPHSAAY---VIAFKQRFPSEVPPFKSIEEKVSNDYRYYQAFLQA 406 Query: 385 KE-----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + + LA S I+ K+ I LP + + + E+ Sbjct: 407 QASGLAFATNTVPNGLAQNKSFSAIAAEAKVKPIHLPPFSLSTRSL-PSELEEKGIDFTT 465 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 L +V + G Y+ + L++ Sbjct: 466 LKKVAFSTPVGKVSQFIPSHQGGYVVYV------EKSLPLDQSR 503 >gi|296879875|ref|ZP_06903848.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] gi|296429164|gb|EFH15038.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] Length = 321 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 126/365 (34%), Gaps = 75/365 (20%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-----GLDKKIL 90 + S TV +V K+ F + + Q G + + IL Sbjct: 11 NSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLIL 70 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150 D L++ + + L V K + + +L + GI+++ Sbjct: 71 DQLITTEVIYSQAKKDNLLPKKEDVEK---SFKELKDAMGK--DEKYKEQLKKLGIDDEF 125 Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 D K L+ + + S+ Sbjct: 126 LRDQQEKDLAMQNYQS----------------------------------NFTKKTKISD 151 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + ++++ +KD ++ E + +L V + K + Sbjct: 152 EEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKPLSAKEKA------------------ 193 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 +K+A+EA + +K G+ F ++A++ + S LG FS+ + D Sbjct: 194 -------EAKKKAEEALKEVKSGEDFAKVAKKYSQDASASDGGKLGFFSRGQMV-AEFED 245 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + FS+ KKG+ + ++ +GY I V++ T SF++ K+ I +Q+ K E++++ Sbjct: 246 AAFSM-KKGEVSDLVETQYGYHIIKVTDRINEQT-SFEDAKETIKDQLLKNKYQEQIEKL 303 Query: 388 YKRLE 392 K + Sbjct: 304 TKEAK 308 >gi|322418543|ref|YP_004197766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320124930|gb|ADW12490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 335 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 49/351 (13%), Positives = 117/351 (33%), Gaps = 76/351 (21%) Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 V + + + + L + + + + LD L L Q Sbjct: 49 VNGVAITRAEIERATRVLLSQSGA--PQQLPPDAMQKAS--QAALDQLTMAELLYQEAAK 104 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 I ++ +V +IA S + + D F L G+ E + K + Sbjct: 105 IEIKDLDQQVEKKIAESKALYP-----NPDAFEEALKGSGLTVAEMTRNARKSIMIN--- 156 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-Y 224 + + + ++A +++++ ++ + Sbjct: 157 ------------------------------TFIEKRFASKVEVTDAEAQKFYQENQEKYF 186 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 PE R S+IL +++ + + E + +++A+ Sbjct: 187 TRPENARASHIL---------VKVDDK-------------LTAEQKQ------QAKEKAE 218 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + +K G+ F +A+ + S LG+F + + ++F++ K G+ + V Sbjct: 219 ALLKRVKGGEDFAAVAKTESGCPSATVGGDLGTFGRGQMV-PPFEKAVFAM-KPGEISSV 276 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FG+ I + + VS++E K I ++ + ++V L+ Sbjct: 277 VESQFGFHIIKLVEKHEAGKVSYEEAKTKIFEYLKAERVRKEVTSFVDELK 327 >gi|118579840|ref|YP_901090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] gi|118502550|gb|ABK99032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] Length = 352 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 64/355 (18%), Positives = 119/355 (33%), Gaps = 76/355 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + V K +++ + + SE + DK L+ L S L Sbjct: 60 KDVVARVNGKPVYARELERVKK---ALLAGRPNQQIPSEHQKEF--DKMALNQLTSAELL 114 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E + + +V +++ GK + + F +A G+NE + ++ + Sbjct: 115 YQAGEKLDTKDIDKQVEAKMS-----QGKARFATTEEFQKAIAGLGMNESDLREYTRRDA 169 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 F + + S+ +++++ Sbjct: 170 V---------------------IANFVQQT------------FASKVTVSDEESRKFYDE 196 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +D ++ E R S+IL V K PEIR Sbjct: 197 NQDKFKQSESVRASHILIGVDPKAD----------------------PEIRK------KA 228 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +++A++ + L G F LA E S LG F + + + FSL K+G Sbjct: 229 REKAEKLRKELAGGADFATLARENSTCPSSQQGGDLGFFPRGQMV-PPFEQAAFSL-KQG 286 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + V+ FGY I K + TVS+ + K I + ++ K + + Sbjct: 287 EVSDVVETQFGYHIIKQMGHKNAETVSYADAKARIVDYLKNQKVNSAITAYLDDA 341 >gi|325105922|ref|YP_004275576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans DSM 12145] gi|324974770|gb|ADY53754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans DSM 12145] Length = 699 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 88/684 (12%), Positives = 200/684 (29%), Gaps = 122/684 (17%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 S + F +S + V +K+ + F Q ++G +N++ + + Sbjct: 34 SGSGFIADANSKIGEVDGEKISYQDFNTRVDQNSQQFRAQMG-NLNAQM--QSYIVENTW 90 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSP------LFHGKD-NKFSHDVFVSRLAR 143 + + S L++ E +GL ++ + +P +F + F+ +S Sbjct: 91 NQMTSSIILEKQTEKLGLTVGTAELFDLMFDNPSPQMQQIFADPNTGAFNRANAISSRKS 150 Query: 144 EGINEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ-------------- 181 D+ S + + G+ ++L Sbjct: 151 ADTEPSGQLKAQWVSLEDNILHERSNQKYLALVRNGVYANSLDAKDDYTNKNKLVNFDYL 210 Query: 182 ----------------------------AKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 + E R+ +Y+V + + Sbjct: 211 VLDLASIKDADVKLTDADYKEYYEKNKYRFKNQTETRTFEYVVFDASP----SKQDTLEA 266 Query: 214 TQWFEKYKDNYRAPE----YKRISYILFDVHEKEKKIEISNDELQAEYEKNK-------- 261 +K + +R + Y I+ + +KK + + +K Sbjct: 267 KAKIDKIAEGFRTTDNDSLYVAINADTKEPIAYQKKGTLEPALDSVMFNASKGYVYGPYI 326 Query: 262 -----------EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAE 301 + SP+ ++ + +AD ++KG F +LA+ Sbjct: 327 ADGAYKVAKLVDSRISPDSVKARHILLNPATEGGMDKAKSKADSIKNLIQKGASFAELAK 386 Query: 302 EQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI--HGSFGYVIAHVSN- 355 E G S LG+F++ + D++F G V FG + + Sbjct: 387 EFGTDGSKDSGGDLGTFARGSMV-PKFEDAVF----NGPVGQVFTLETQFGVHVIEIQKQ 441 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I S V V K IA + +A+ + + + +E ++++ IV + Sbjct: 442 IGSSKVVKVAVVDKQIAPSSQTEQAA---YQKAQAFIAAVKDQKQFEENAQKQGIVKLVA 498 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 V + + ++ + D + + + V + P Sbjct: 499 DDV-----TPLQGGLPGLDDARSIVRWAYQADKGDISNEIFTVGSKYVVAV-LTNVKPEG 552 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 LE+V ++ + + KA++ + N + + LG + + I Sbjct: 553 TLPLEQVKKQIEPSVMHLVKGRMLKEKADKALS----GASNLAQVAQKLGVTTSSVENIV 608 Query: 536 RMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593 + + + + +F + + + YV + + K Sbjct: 609 FANPIIPGYSQENIVVGSIFGSQPNKLSKAIVGDRGVYVYTVKSFIEPAAFTNAAKSKES 668 Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617 L Q M+ +V LK + Sbjct: 669 LVQTMSSQADGAVFQVLKENAKIK 692 >gi|322417707|ref|YP_004196930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320124094|gb|ADW11654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 319 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 125/392 (31%), Gaps = 84/392 (21%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 ++ +A L +L V + S V + + + + + Sbjct: 2 AKIIMACTLLALLAVT------PTFAHAKPISGIAAIVNDEVITSTDVDREY-----ALM 50 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 QK + + +GL L+ LV ++Q I ++ ++ V I K Sbjct: 51 QKEAEKLPASE--KMGLKSAALNRLVDKKLVEQKIRELDIKVSDEDVRLAIEDV----KK 104 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 N + + LA +G+ +Y + L R ++ Sbjct: 105 QNNLTQEALEQALATQGLTFAQYQVQLKEQLERMRLMSQ--------------------- 143 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 V + + +++E ++ +Y E +I F V K + Sbjct: 144 ------------EVRSKIQVGEREMREYYESHRADYGGSETFHARHIFFKVDPKASAEDA 191 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + E K A E + G+ F +LA++ + S Sbjct: 192 AKAE----------------------------KLAGEVLAKARAGEDFAELAKKYSQDPS 223 Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG+F + + + D++ ++ K GD + ++ G I + SF Sbjct: 224 AAKDGGDLGTFKRSDML-PEIGDTVAAM-KPGDVSSIVSSPAGLHIIKLEQKSQEKGRSF 281 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 +EVK I Q+ K+ E+ + K L + Sbjct: 282 EEVKDSIEEQLYKKKSDERFNQWVKELRNAAS 313 >gi|205375588|ref|ZP_03228375.1| protein secretion (post-translocation chaperonin) [Bacillus coahuilensis m4-4] Length = 301 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 I+ ++ E +IE++++E+Q ++ NK + E ++ +++ A+E Q L Sbjct: 113 DITLFIYSNKLMEDRIEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKL 172 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +G F +LA E S LG F K + ++ F A+ G T + F Sbjct: 173 DEGGDFAELAAEYSTDTSNASQGGDLGFFGKGQMV-PEFEEAAFG-AEVGSITGPVQTDF 230 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY I V + + + ++VK+++ ++ K ++ + L+ Sbjct: 231 GYHIIKVEEKQEAKEATLEDVKEEVRETIKQQKQQQEYPVWIEELK 276 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 8/148 (5%) Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V++ + + D Q++ + + +E +++ L G E++ Sbjct: 128 IEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKLDEGGDFAELAAEYST 187 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + G KG+ V P E+ F D Y ++++E Sbjct: 188 DTSNASQGGDLGFFGKGQMV---PEFEEAAFGAEVGSITGPVQT-----DFGYHIIKVEE 239 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEE 498 A++ LE+V +V++ K K +E Sbjct: 240 KQEAKEATLEDVKEEVRETIKQQKQQQE 267 >gi|168187039|ref|ZP_02621674.1| foldase protein PrsA [Clostridium botulinum C str. Eklund] gi|169295091|gb|EDS77224.1| foldase protein PrsA [Clostridium botulinum C str. Eklund] Length = 348 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 57/406 (14%), Positives = 122/406 (30%), Gaps = 84/406 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW- 60 ++ IRK VA + + V V + + + + V VG +K+ +++ Sbjct: 1 MKNIRK----LVAAVAMCVFSVSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNFG 56 Query: 61 -KQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116 K+ + G L + ++ + + L Q E + L + Sbjct: 57 VKRYAEQFKAQYGDNYAENPQVKEQLKQVKLAVVQQMAAQEALKQEAEKLKLVPKEDELK 116 Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E + + N + F + G ++ + + + + Sbjct: 117 KEADKKIQEIKKEQNIKTDQDFDKMVKASGFTKEGFENLVKDNVILEKLQN--------- 167 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----RAPEYKR 231 + + +++E +KD Y + P Sbjct: 168 -------------------------ELTKNVKVDEKEMQKYYETHKDKYPKDPKNPTKVH 202 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 +++I+ +E ++ + E + L Sbjct: 203 LAHIILQPKSQEDVSKV-------------------------------ESEIKSIKEELN 231 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG F LA++ + S LG+ D DS L K G + + FG Sbjct: 232 KGADFSILAKKYSQDGSKDKGGDLGTVPVVNSGFDEQFMDSALPL-KDGQISDPVKTQFG 290 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 Y I + +F EVK +I + K + +K +K++++ Sbjct: 291 YHIIKMIKKDVKPCKTFAEVKNEINKFLLQDKKDKAIKNKFKQIQD 336 >gi|148264947|ref|YP_001231653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146398447|gb|ABQ27080.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 341 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 59/357 (16%), Positives = 121/357 (33%), Gaps = 77/357 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V + + K + ++ + E + ++ LD L+S L Sbjct: 50 TDPVAKVNDTIITRLDLDRAVKVLVS--QNRLPQPLPPESLKQA--EEAALDQLISAELL 105 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKM 158 Q + + +V +++++ KF S D F L + EK+ + K Sbjct: 106 YQAGQKTEIRDLEKQVEEKVSQNKA------KFPSADEFEKALKSVEMTEKDLKEFTRKD 159 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + ++ + +++ + A ++++ Sbjct: 160 VVISNFIE---------------------------------KNIAEKTKVTEADAKKFYD 186 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D ++ + S+IL V E Sbjct: 187 DNPDKFKQEPSVKASHILCGVEASATAEE----------------------------KKK 218 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 +++A+ + +K G+ F LA+ + S LG FSK + + F+L K Sbjct: 219 AKEKAEALLKKIKAGEDFATLAKSESTCPSSKQGGDLGFFSKGQMV-APFEKAAFAL-KP 276 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + V+ FGY I ++ K T+ F EVK+ I N ++ K + + E L+ Sbjct: 277 GEVSDVVETQFGYHIIKLTEKKEGGTIKFDEVKEKIENYLKNLKIQKAIGECLVELK 333 >gi|182420001|ref|ZP_02951235.1| foldase protein PrsA [Clostridium butyricum 5521] gi|237669545|ref|ZP_04529525.1| prsA family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376038|gb|EDT73625.1| foldase protein PrsA [Clostridium butyricum 5521] gi|237654989|gb|EEP52549.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 343 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 101/358 (28%), Gaps = 70/358 (19%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLD 100 +VG +K+ + K + + Q+ G + L + + L+ +V+ + Sbjct: 39 ATVGDEKITKADMDEEMKATIDQLKQQYGDDYANNEKIKDQLKQMKVQYLNAMVNEKLML 98 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 + E +G+ + + K L G E Y D+ K Sbjct: 99 KNAESVGVTPTDDELNEYADKQIE-QLKQAYPDDAQLQQVLEANGFTEDSYKDYAKKQYK 157 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 V A + ++ ++++ Sbjct: 158 LQKVQEAIT----------------------------------ADVEVTDDDAKAYYDEN 183 Query: 221 KD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 KD Y ++IL + I+ + Sbjct: 184 KDSQYTVGAGANAAHILIAEKGSDGNIDFD----------------------------AS 215 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +A+E L G F QLA E G LG + + F +G Sbjct: 216 LAKANEVKAKLDAGADFAQLASEYGTDGTKDKGGDLGFVAYNQANYDQDFLAGFKQLSEG 275 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + I FGY I + IK F +VK+ I +Q+ + S+ + ++ Sbjct: 276 QISDPIKSQFGYHIIKATGIKDEVVTPFDDVKEQIKSQLLQQQQSKAFNDKISEWKDA 333 >gi|21673044|ref|NP_661109.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum TLS] gi|21646111|gb|AAM71451.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum TLS] Length = 700 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 84/640 (13%), Positives = 183/640 (28%), Gaps = 81/640 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSW 60 + +R + + LV F+ +++ + + V V + + + + + Sbjct: 4 MSKLRDKTH--IVLFVLVAAFLALIVFEWGMNFTGPTRKAGVAGKVNGESISMNEYEALY 61 Query: 61 KQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + Q G + S ++ + +V L Q ++ G+ V + Sbjct: 62 NNIVAGFRQSNPGVEITSGL--DAKFREQAWNYVVDQTLLAQLLKKYGITVTDQEVLDAV 119 Query: 120 ---ARSPL-----FHGK-DNKFSHDVFVSRLAREGINEKEY----IDHYTKMLSRTDVVG 166 P F K + AR K++ + + L +V Sbjct: 120 NNPVNPPAIIRQNFTDPRTGKIDRQLLEQ--ARSDPKAKDFWLNAQEAIKRELMVNKLVM 177 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNY 224 + ++ L + + F + +I + A + + + W++ +K+ + Sbjct: 178 TLRTMVFVTDPELTEVVQRQFTTFAGSFIPFPYSYAGAETNFPVKDDEIKAWYDSHKEQF 237 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 R + ++ F + Q +KE D Sbjct: 238 REEPVRSAEFVFFPLTP------------------------------SRQDSLQVKKEID 267 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVI 342 K + + Q + ++ ++ P + ++FS K G I Sbjct: 268 GLIPQFAAAKSDSEFVKIQSDLPNSANVTLSRADFSP--AAGQALFSSPKLVPGQIVGPI 325 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 Y + + ++ V+ I + + K++ E L G S Sbjct: 326 ADEGYYRLLKIKSVTTGEPVA-SASHILIRLNPADKAEAARAMGLLKKISEELKGGASFA 384 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 ++ + F G K + V Q VF K + P + Sbjct: 385 SLAAKYSEDPGSARNGGFVGWFTKDRMV------PQFAQAVFA-----GKPGQIVGPVQT 433 Query: 463 YMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 + I + R EV +K + +T+E + +A + E +G F Sbjct: 434 QFGLHIIKIEGFDNRRIVCSEVARQIKA---STQTSETIKRQAQAFLTEAKSKG--FEAA 488 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV---- 576 K + T R + I+ + ++ +VV K+ Sbjct: 489 AKAQRLEVGKTGDFTRQSLLAVPGMGEAITGFAFKAKDSDISDVLDAEKGFVVAKLLTQN 548 Query: 577 -TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 T Q K+ + L + L S + L Sbjct: 549 DTGYHQLDAQLKEMIKTELVREKQGAALKSKLVALSKSSG 588 >gi|210623289|ref|ZP_03293706.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275] gi|210153690|gb|EEA84696.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275] Length = 333 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 58/364 (15%), Positives = 123/364 (33%), Gaps = 79/364 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL------DKKILDNL 93 + TV V K+ + K + IG + G+ + +LD + Sbjct: 22 NETVADVNGTKITLGQYEFMLKMNKDSVESNIGGADKWDEKDQTGVSYKDKYKRLVLDQM 81 Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 ++ L Q E GL+ + Y D Sbjct: 82 INTELLAQNAEKEGLKPTDKEIQ--------------------------------ASYND 109 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAV 212 T + S ++ G L +QAK + + ++A Sbjct: 110 LKTYVNSDENLKGAAEELGINDEFLKEQAKISLLIQK--------SQEKFYKEEKVTDAE 161 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 + ++++++ D Y+ E + ++ ++ K + ++ Sbjct: 162 MKKYYDEHIDEYKKDEVEASHILIKTTDDQNKPLPEAD---------------------- 199 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADS 328 + +A + + +K G F +LA+ + G + + +LG+F K + D+ Sbjct: 200 ---QKKAKAKAKKVLKEVKAGGDFAELAKKYSQDPGSAANGGALGAFGKGMMV-QEFEDA 255 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F + + G+ + ++ FGY I V++ T SF+E K I ++ K EK+ Sbjct: 256 AFGM-EPGEVSDLVKTDFGYHIIKVTDRIK-ETTSFEEAKAGIKEEILKNKYGEKIAALQ 313 Query: 389 KRLE 392 K+ + Sbjct: 314 KKAK 317 >gi|307721593|ref|YP_003892733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas autotrophica DSM 16294] gi|306979686|gb|ADN09721.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas autotrophica DSM 16294] Length = 276 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++YK Y+ E + + V +K+ I+ISN EL+ Y KNKE++ E + Sbjct: 86 KEYKSEYKKLEQRMKKELAIQVWQKKLLDSIKISNKELKDYYNKNKEEFNEKESVHARHI 145 Query: 276 VFPNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLA 326 + + EA + LK +KFI+LA+++ S LG FSK + + Sbjct: 146 LVKAEDEAKKIIAQLKSLSGEKLKEKFIELAKKESTGPSGPKGGDLGYFSKGQMV-PAFN 204 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 D +FS+ K + FGY + +V + KPS T SF EVK I ++++ K +K+ Sbjct: 205 DKVFSMKKGEVTLKPVKTQFGYHVIYVEDKKPSMTRSFDEVKAFIEQRLKMEKFKAVMKK 264 Query: 387 DYKRLEEFLA 396 L++ A Sbjct: 265 KMDALQKKAA 274 Score = 37.3 bits (85), Expect = 7.6, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%) Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 K+ + + + KA ++ K+ +L+ G + E P G Sbjct: 137 KESVHARHILVKAEDEAKKIIAQLKSL--SGEKLKEKFIELAKKESTGPSGPKGGDLGYF 194 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + +P +F + + L T Y + +++ P+ R +EV ++ Sbjct: 195 SKGQMVPAFNDKVFSMKKGEVTLKPVKTQF----GYHVIYVEDKKPSMTRSFDEVKAFIE 250 Query: 488 KDWKTVKTAEEVSSKANQLVLEYS 511 + K K + K + L + + Sbjct: 251 QRLKMEKFKAVMKKKMDALQKKAA 274 >gi|310825131|ref|YP_003957489.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] gi|309398203|gb|ADO75662.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] Length = 330 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 60/360 (16%), Positives = 99/360 (27%), Gaps = 89/360 (24%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 ++ V V + + + F +EL G E + +LD L+ Sbjct: 30 PDANVVAMVNGEVLGRAEFEQELWRELSSAE---GPERTPEEVEPF--KRALLDTLIKRM 84 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 L Q + L V + R + + F LA+ ++ E Sbjct: 85 LLLQQAKQYNLTVTPDEVDRRMLRL------SGDYPAENFSEVLAQGQMSLAELRAREAN 138 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 L + HV A + L + Sbjct: 139 RLIIEKLF---------------------------------TNHVYARVAVTEEELRAAY 165 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 ++ ++ PE QLV Sbjct: 166 TAHEAEFQEPEQV----------------------------------------HAAQLVV 185 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334 EA LK GKKF LA S LG F + +P + +F+L + Sbjct: 186 KGLDEARRVQAQLKAGKKFADLARRYSLSADAKVGGDLGFFPRGQMP-PVFDEVVFNL-R 243 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + V+ +GY + V KP+ F EV+ + + K E + K L + Sbjct: 244 PGQVSDVVSTEYGYHLFRVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDK 303 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 10/169 (5%) Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + Y V+ + + E + Q+ + K ++ +R++ L G + Sbjct: 147 TNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFAD 206 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 ++RR + + D + G +G+ P ++++F + + V + Y Sbjct: 207 LARRYSLSA-DAKVGGDLGFFPRGQ---MPPVFDEVVFNL-----RPGQVSDVVSTEYGY 257 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 ++ E PAR R EV V+ K EE + +L+ +K Sbjct: 258 HLFRVLEFKPARKRDFVEVRAKVEAREVKRK-QEEAHEAFEKALLDKAK 305 >gi|253698853|ref|YP_003020042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251773703|gb|ACT16284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 317 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 56/361 (15%), Positives = 107/361 (29%), Gaps = 78/361 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + + + Q + GL L+ LV + Sbjct: 27 SGIAAIVNDEIITTLELDKEY-------LQIQKEADKVPASDKSGLRGAALNRLVERKLI 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q I ++ + V I K N + + LA +G+ +Y + L Sbjct: 80 EQKIRELNINVSDEEVRLAIEDV----KKQNNLTQENLEQALATQGMTFAQYRIQLKEQL 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ V + + ++++ Sbjct: 136 ERLRLMSQ---------------------------------EVRSKVQVGEREMREYYQA 162 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 Y E +I F V +K E+S E + Sbjct: 163 NIAAYGGSEVFSARHIFFKVDKKGGAGELSKAEAR------------------------- 197 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335 A+E + G+ F LA++ LG+F K + + D++ ++ + Sbjct: 198 ---ANEVLAKARAGEDFAALAKQYSDDPAAAKDGGDLGTFKKADML-PEIGDTVAAM-QP 252 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + V+ G I + K F+EVK I + + K+ E+ + K L Sbjct: 253 GEVSSVVRSPSGLHIIKLEGKKQDAGRPFEEVKDSIEDTLYKKKSDERFAQWVKELRASA 312 Query: 396 A 396 A Sbjct: 313 A 313 >gi|46397002|sp|Q97E99|PRSA_CLOAB RecName: Full=Foldase protein prsA; Flags: Precursor gi|325510620|gb|ADZ22256.1| peptidylprolyl isomerase [Clostridium acetobutylicum EA 2018] Length = 333 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 50/395 (12%), Positives = 110/395 (27%), Gaps = 85/395 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELG 65 K+++ + + + + + + S V ++ G Q + K + Sbjct: 2 KSAKQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVE 61 Query: 66 MISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 + + G L K+ IL +L+ + +D + + + Sbjct: 62 QLKSQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDV 121 Query: 123 -PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 + + S F S+L++ G E+ D ++ V Sbjct: 122 YAQYQQEFKTESE--FKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVV------------ 167 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 S+ ++++ +K++Y Sbjct: 168 ----------------------KDVKVSDDEAKKYYDSHKNSYT---------------- 189 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 SP + ++ +KEA + KG+ F +A+ Sbjct: 190 -----------------------QSPNTVHLAHILVKTEKEAKAVKARIDKGEDFATVAK 226 Query: 302 EQGKSLS---DISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + S LG + + D + + L + +H FG+ + Sbjct: 227 QVSTDGSKEKGGDLGDIQENDSNYDKTFMAAALKL-NDNQVSAPVHTQFGWHVIKCIKKT 285 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F VK DI + TK ++ K+ E Sbjct: 286 EYPVKDFNSVKDDIKQTVLSTKQKSVYQKTLKKWE 320 >gi|148381478|ref|YP_001256019.1| foldase protein PrsA [Clostridium botulinum A str. ATCC 3502] gi|153933333|ref|YP_001385853.1| peptidylprolyl isomerase [Clostridium botulinum A str. ATCC 19397] gi|153935960|ref|YP_001389260.1| peptidylprolyl isomerase [Clostridium botulinum A str. Hall] gi|226712001|sp|A7FPK5|PRSA_CLOB1 RecName: Full=Foldase protein prsA; Flags: Precursor gi|226712002|sp|A5I7R3|PRSA_CLOBH RecName: Full=Foldase protein prsA; Flags: Precursor gi|148290962|emb|CAL85098.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum A str. ATCC 3502] gi|152929377|gb|ABS34877.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum A str. ATCC 19397] gi|152931874|gb|ABS37373.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum A str. Hall] Length = 336 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 121/395 (30%), Gaps = 86/395 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64 K+++ ++ + L + + F + + ST+ V +K+ S +Q L Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61 Query: 65 GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I + G SE+ + K+IL+NL++ L Q +++ + + E + Sbjct: 62 SQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F L G ++ ++ + V+ Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLRDQIVIEKVIN--------------- 166 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240 V + +++ + + + P +S+IL Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + EA + + L + F ++A Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227 Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +E + G + D + + +L K+G + +H +GY I V++ Sbjct: 228 KEVSQDPGSKDKGGLLGDISYSDSNYDPTFMKAAIAL-KEGTISNPVHTQWGYHIIKVNS 286 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321 >gi|188590380|ref|YP_001919599.1| peptidylprolyl isomerase [Clostridium botulinum E3 str. Alaska E43] gi|188500661|gb|ACD53797.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum E3 str. Alaska E43] Length = 343 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 52/406 (12%), Positives = 126/406 (31%), Gaps = 100/406 (24%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 + VA + + L + + + ++ + +VG++K+ K Sbjct: 2 NKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITES 61 Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + QK G S L + + L+ +V+ + ++ L + ++ + Sbjct: 62 LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEAV 121 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 ++ + + + + L + G E E+ ++ Sbjct: 122 SYYKTAYQT-EEQYNTFLEQNGFTEDEFKEYQKNQ----------------------AIV 158 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 R+ ++ + + ++ + +++++ KD Sbjct: 159 RYVYQ------------DMVKDVEVNDEDIQKYYDENKD--------------------- 185 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 ++ +P ++ + ++A+E L G F ++A+E+ Sbjct: 186 ------------------TQFSTPGEIDFDKSL----QQANEIKSQLDGGADFAEVAKEK 223 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357 + SLG V F K+G+ + I FGY I V+ +K Sbjct: 224 SQDPGTKGNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDD 283 Query: 358 -------------PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 ++VK+DI Q+ K S+ E + Sbjct: 284 GADVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEE 329 >gi|187932868|ref|YP_001884407.1| peptidylprolyl isomerase [Clostridium botulinum B str. Eklund 17B] gi|187721021|gb|ACD22242.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum B str. Eklund 17B] Length = 343 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 53/406 (13%), Positives = 126/406 (31%), Gaps = 100/406 (24%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 + VA + + L + + + ++ + +VG++K+ K Sbjct: 2 NKIKKIVASVVVATLAFSIVGCKMIEKTPESIKNTVLATVGKEKITQGDLDRDLKSITES 61 Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + QK G S L + + L+ +V+ + ++ L + E+ + Sbjct: 62 LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSTELNLRPSDEELNKEVDEAV 121 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 ++ + + + + L + G E E+ ++ Sbjct: 122 NYYKTAYQT-EEQYNAFLEQNGFTEDEFKEYQKNQAV----------------------- 157 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 V Y+ + + + ++ + +++++ K+ Sbjct: 158 --------VRYVY---QDMVKDVEVNDDDIQKYYDENKE--------------------- 185 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 ++ +P ++ + ++A+E L G F ++A+E+ Sbjct: 186 ------------------TQFSTPGEIDFDKSL----QQANEIKSQLDGGADFSEVAKEK 223 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357 + SLG V F K+G+ + I FGY I V+ +K Sbjct: 224 SQDPGTKDNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDD 283 Query: 358 -------------PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 ++VK+DI Q+ K S+ E + Sbjct: 284 GAEVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEE 329 >gi|197116616|ref|YP_002137043.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter bemidjiensis Bem] gi|197085976|gb|ACH37247.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family [Geobacter bemidjiensis Bem] Length = 317 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 53/356 (14%), Positives = 106/356 (29%), Gaps = 78/356 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + + + Q + G GL L+ LV + Sbjct: 27 SGIAAIVNDEIITTQELDKEYLQIQKDADKVPGS-------DKSGLRGAALNRLVERKLI 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q I ++ + V I K N + + L +G+ +Y + + Sbjct: 80 EQKIRELNINVSDEEVRLAIEDV----KKQNNLTQENLEQALVTQGLTLAQYRTQLKEQM 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ V + + ++++ Sbjct: 136 ERLRLMSQ---------------------------------EVRSKVQVGEREMREYYQA 162 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 Y E +I F V +K E+S E + Sbjct: 163 NIAAYGGSEVYSARHIFFKVDKKGGAGELSKAETR------------------------- 197 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335 A+E + G+ F LA++ LG+F K + + D++ ++ K Sbjct: 198 ---ANEVLAKARAGEDFAALAKKYSDDPAAAKDGGDLGTFKKADML-PEIGDTVSAM-KP 252 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ + ++ G I + K F++VK I + + K+ E+ + K L Sbjct: 253 GEVSSIVRSPAGLHIIKLEGKKQDAGRPFEQVKDSIEDTLYKKKSDERFAQWVKEL 308 >gi|294498814|ref|YP_003562514.1| foldase protein PrsA [Bacillus megaterium QM B1551] gi|294348751|gb|ADE69080.1| foldase protein PrsA [Bacillus megaterium QM B1551] Length = 291 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 87/232 (37%), Gaps = 22/232 (9%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----------------RAPEYKRISYI 235 ++ V++ ++ + E K Y + K + Sbjct: 62 IEQKVISKEAAKQNIKVTDKEINAELENLKSQYGGEDALNQALASSGVKLSELKKDLKTN 121 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + E I I + E+++ + +NK+ + ++ ++K A E L KG+ Sbjct: 122 IEAKKMVESTINIKDSEMKSYFNQNKDSLATEAQVKASHILVADEKTAKEVKAKLDKGED 181 Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+E + LG F K + + + A+ FS+ K + + + +GY I Sbjct: 182 FAKLAKEYSTDTASKSNGGDLGYFKKGDMVE-AFANKAFSM-KVNEVSDPVKTEYGYHII 239 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V+ K + +++ K I + K + ++L++ + +D Sbjct: 240 KVTGKKEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKKYDITNKLDS 291 >gi|222056577|ref|YP_002538939.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] gi|221565866|gb|ACM21838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] Length = 340 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 62/367 (16%), Positives = 137/367 (37%), Gaps = 77/367 (20%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 + + + VS S V + + + K + ++ + E+ + ++ Sbjct: 39 VKETVKKVSPSDPVAKINGTIITRKELDRAVKVLVA--QNRLPQALPPEQQKQA--EEAA 94 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINE 148 LD L+S + Q + ++ ++ +IA + KF + + F L ++E Sbjct: 95 LDQLISAELMYQAGQKTEIKDIDKQIEEKIALNRA------KFPNPEEFDKALKSVEMSE 148 Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 K+ + K + T + +++ + + Sbjct: 149 KDLKEFTRKDIVITAFIE---------------------------------KNIISNINV 175 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + A ++++ + ++ E R S+IL V K E++K+K Sbjct: 176 AEADAKKFYDDNTEKFKQDESIRASHILIGVDAKAG-------------EEDKKK----- 217 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 +++A+ + +K G+ F LA+ + S LG+F K + Sbjct: 218 ----------AREKAEGILKKIKAGEDFATLAKAESTCPSSKQGGDLGTFPKGQMV-APF 266 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 ++ F+L K G+ + V+ FGY I ++ K + V F EVK I + ++ K + V Sbjct: 267 ENAAFAL-KPGEVSDVVETQFGYHIIKLAEKKEAGMVKFDEVKTKIVDYLKSQKIQKGVG 325 Query: 386 EDYKRLE 392 + + L+ Sbjct: 326 DYLEELK 332 >gi|212640109|ref|YP_002316629.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone) [Anoxybacillus flavithermus WK1] gi|212561589|gb|ACJ34644.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone) [Anoxybacillus flavithermus WK1] Length = 288 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 27/207 (13%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEIS 249 + ++ L + E K+ Y + L + I+++ Sbjct: 72 LSKKFKVTDEELNKEIENLKEMYGIQYDLAVQQNGEEAIRDMVKLDLLRQKAAMEDIKVT 131 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308 ++EL+ Y + K K ++ ++K A + L+KG+ F +LA+E K Sbjct: 132 DEELKKYYNEYKPK------VKASHILVDDEKTAKDIKAKLEKGEDFAKLAKEYSKDTGS 185 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG F + + + ++L G+ + + FGY I V++ + SF Sbjct: 186 AQNGGDLGWFGPGKMVE-EFEKAAYAL-NVGEISDPVKTQFGYHIIKVTDKE--KKKSFD 241 Query: 366 EVKKDIANQMRITKA-SEKVKEDYKRL 391 E+K++I +++ +K + KV+ L Sbjct: 242 EMKEEIEFEVKKSKLDTSKVQSKLDEL 268 >gi|295704136|ref|YP_003597211.1| foldase protein PrsA [Bacillus megaterium DSM 319] gi|294801795|gb|ADF38861.1| foldase protein PrsA [Bacillus megaterium DSM 319] Length = 291 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 88/232 (37%), Gaps = 22/232 (9%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----------------RAPEYKRISYI 235 ++ V++ ++ + E K Y + K + Sbjct: 62 IEQKVISKEAAKQNIKVTDKEINAELENLKSQYGGEDALNQALASSGVKLSELKKDLKTN 121 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + E I I + E+++ +++NK+ + ++ ++K A E L KG+ Sbjct: 122 IEAKKMVESTINIKDSEMKSYFDQNKDSLATEAQVKASHILVADEKTAKEVKAKLDKGED 181 Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+E + LG F K + + + A+ FS+ K + + + +GY I Sbjct: 182 FAKLAKEYSTDTASKSNGGDLGYFKKGDMVE-AFANQAFSM-KVNEVSDPVKTEYGYHII 239 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V+ K + +++ K I + K + ++L++ + +D Sbjct: 240 KVTGKKEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKKYDITNKLDS 291 >gi|189423767|ref|YP_001950944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] gi|189420026|gb|ACD94424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] Length = 355 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 112/356 (31%), Gaps = 74/356 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + F + Q + +QK G V ++ R L +LD L+ Sbjct: 55 NGVAAIVNDDIITFREVLRE-SQAVIQDAQKKGLVDDTAR---HNLRVMVLDRLIEKLLT 110 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q I+++G++ + I ++N + + L +G +Y + L Sbjct: 111 EQKIKELGIKIGDDEIRQAIDDV---KRQNNNMTQSQLEAALKSQGYTFAQYEVQLREQL 167 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R +V M V + S ++++ Sbjct: 168 ERLRLVSM---------------------------------EVRSKIYVSEKEAEEYYQS 194 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + +Y E + S+I V EK +I Sbjct: 195 HLSSYAEEETFKASHIFIKVDEKAPADQIQQAM--------------------------- 227 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335 +A + ++GK F QLA E SLG+F + + L +I L K Sbjct: 228 -NKALKVLFEARQGKDFAQLAREYSDDAAAKKDGGSLGTFKRGEML-ADLEKAILPL-KP 284 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ ++ G I + F+ VK DI++ + K + K L Sbjct: 285 GEVGELVSTPSGLHIVKLDERSSGKVKPFETVKADISDLLYRQKQDSRFTSWMKEL 340 >gi|86143854|ref|ZP_01062222.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis MED217] gi|85829561|gb|EAQ48024.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis MED217] Length = 707 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 102/729 (13%), Positives = 205/729 (28%), Gaps = 145/729 (19%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR+ R+ + + F++ + + + + SV + F Sbjct: 4 LNKIRQ--RSVFLIAIIALALFAFVLADVFKNGGFSTEKSQRVLGSVNDTDIEQQEFAQL 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115 Q+ G + + +A + ++++ S LD+ E++G+ + R+ Sbjct: 62 VDQQTARY----GNNITNTQAVNAAWEQEV-----SRIILDEQYEELGISIEQDRINDLL 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGMF 168 + P F ++ FS +A + Y K R + Sbjct: 113 KEALQTDPNFQNENGVFSEQKLKEYIATLKSTNPQMYQQWVAYEQQLAKNEQRQIYFSLI 172 Query: 169 VGGMRPS--------------------------------NLLLDQAKRFYFEN------- 189 G+ S ++ ++ + E+ Sbjct: 173 KAGLNTSFKEGQMAFEMENNLRDLEYVQVPYTSIPDEEVSVSKEEITAYIKEHSNEFQTE 232 Query: 190 --RSVDYIVLNNRHVPAIADPSNAVLTQWFEK---------------------YKDNY-- 224 R++ Y+ N + LTQ EK +++ Sbjct: 233 AARNIRYVKFNEDPTLKDEEAVKESLTQLLEKRVEYTAATKTNDTVAGLATTTNPEDFVN 292 Query: 225 -RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-----------FSPEIRTV 272 + E +Y+ + E+ + A Y K+ P+ Sbjct: 293 EYSDERYTDAYLFKNELPSAAADELWALDEGAVYGPYKDGETFKISKVVAVTQIPDSVQS 352 Query: 273 EQLVFP------------NQKEADEAFQSLK-----KGKKFIQLAEEQGKSLS---DISL 312 ++ + EA SL K LA E S L Sbjct: 353 SHILLTYQGLANAGAQTRTKAEAKALADSLAGVIKAAPSKLADLAPEFSADGSKEKGGDL 412 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKDI 371 G +K D IF K GD V+ FGY + +++ K + V K + Sbjct: 413 GYATKGRFVKP-FNDFIFD-GKTGDV-GVVESRFGYHVIRITDQKNVQRAIKLATVTKAV 469 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + E K D+I++ + ++ + + G+ Sbjct: 470 EPS--QETINNVFNETTKFQMAVTEDKNGFDDIAKEGGYNVRPVNNINALDETLPGQG-- 525 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 + +++ F ++ + D +G Y+ VQ+ + +E V + Sbjct: 526 ---SQREIIRWAF-DEERKTGDVERFNVEGGYLVVQVTKKTEKGLLPADEASPRVTPVLR 581 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--I 549 K AE++ G + I ++ T+ +N + G + + Sbjct: 582 NQKKAEQIKKNI---------SGSDLSAIASANNTTVQTSPGVNLKNPTLAGSGTEPKVV 632 Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIA 608 + F V PIE V KVT + F + +I Sbjct: 633 GKAFGLEEGEV-SEPIEGNRGVYVVKVTKITPARELDNYASFAVQKQNADRATVNMRIIQ 691 Query: 609 YLKSQYSVT 617 LK + Sbjct: 692 ALKDAAEIE 700 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 11/130 (8%) Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFS 331 V NQK+A++ +++ G +A ++ + + + + F Sbjct: 579 VLRNQKKAEQIKKNI-SGSDLSAIASANNTTVQTSPGVNLKNPTLAGSGTEPKVVGKAFG 637 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMRITKASEKVKED 387 L ++G+ + I G+ G + V+ I P+ SF V+K A++ + + +D Sbjct: 638 L-EEGEVSEPIEGNRGVYVVKVTKITPARELDNYASFA-VQKQNADRATVNMRIIQALKD 695 Query: 388 YKRLEEFLAL 397 +E+ + Sbjct: 696 AAEIEDRRSN 705 >gi|251778310|ref|ZP_04821230.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082625|gb|EES48515.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 343 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 51/406 (12%), Positives = 125/406 (30%), Gaps = 100/406 (24%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 + VA + + L + + + ++ + +VG++K+ K Sbjct: 2 NKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITES 61 Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + QK G S L + + L+ +V+ + ++ L + ++ + Sbjct: 62 LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEAV 121 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 ++ + + + + L + G E E+ ++ Sbjct: 122 SYYKTAYQT-EEQYNTFLEQNGFTEDEFKEYQKNQ----------------------AIV 158 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 R+ ++ + + ++ + +++++ KD Sbjct: 159 RYVYQ------------DMVKDVEVNDEDIQKYYDENKD--------------------- 185 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 ++ +P ++ + ++A+E L G F ++A+E+ Sbjct: 186 ------------------TQFSTPGEIDFDKSL----QQANEIKSQLDGGADFAEVAKEK 223 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357 + SLG V F K+G+ + I FGY I V+ +K Sbjct: 224 SQDPGTKGNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDE 283 Query: 358 -------------PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 ++VK+DI Q+ K S+ + Sbjct: 284 GADVAHILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNGKIEE 329 >gi|330721963|gb|EGG99901.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium IMCC2047] Length = 154 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 1/153 (0%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 ++ I+ S+ +AKI + ++ + F ++G+ + + GSS V ++ + + Sbjct: 3 IQSIKDNSQGMIAKIIVGLIVLTFALFGVDAIVGNSGGSSKAAVVNGDEISEFELLRAAD 62 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + Q++G + + + + L+ L+ L Q ++ + +GRV I + Sbjct: 63 FFKRRMLQEMGANADPDLIDDQLVRARALEELIQRQLLLQAADEQAIFVANGRVDQAILQ 122 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + F + F +++ L + +Y H Sbjct: 123 NESFQ-TNGVFDRNIYEYTLRNLQMTPVDYKAH 154 >gi|114778682|ref|ZP_01453494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus ferrooxydans PV-1] gi|114551044|gb|EAU53606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus ferrooxydans PV-1] Length = 570 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 54/402 (13%), Positives = 121/402 (30%), Gaps = 67/402 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + + S + L + Q G + L+++ LD L+ Sbjct: 23 DSIAAVVNNEAITCSQVDQDAQIMLTQLHQS-GSTFIPA---ASELNQRSLDGLIVKTLQ 78 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + L+ + I N + D + + ++G++ EY + + + Sbjct: 79 KQEARKLELKVSDEELDDAIKNVAA----SNNLTPDQLKAAVEQQGMHYDEYRSNLREQI 134 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFE----NRSVD----YIVLNNRHVPAIADPSN 210 + +V ++ S + + R Y E R V ++ L + P + Sbjct: 135 LKNKLVNVAVRSKIQVSEEAVQEYYRKYLEHPKPRREVKLAQLFLSLPSEPTPEQLAVTR 194 Query: 211 AVLT----------------QWFEKYKDN--------YRA--PEYKRISYILFDVHEKEK 244 + + + D + + S + V + Sbjct: 195 QKIRNIHQQLLAGKDFAQMVAIYSESPDRQQQGVMGWFMQGGVAQRFASALEMPVGQISD 254 Query: 245 KIEISN-----DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------- 290 I + L ++ + S + ++ AD A ++ Sbjct: 255 PIRSPSGFHILKVLAERWKDPQNTGVSYDEVHARHILLKVPSYADAATKAKIRQRAEAIS 314 Query: 291 -----KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 +F A+E + S LG F K + + + F++ K G+ + + Sbjct: 315 HDLQGASDAQFAVRAKEDSQGPSAERGGDLGWFKKGAMV-PAFEKAAFAM-KPGETSGPV 372 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 FG+ I + + S Q + I + + E++ Sbjct: 373 ESPFGFHIIRIVARRHIDPNSLQAHRDQIQQILTNVETQEQL 414 >gi|168183618|ref|ZP_02618282.1| foldase protein PrsA [Clostridium botulinum Bf] gi|237796999|ref|YP_002864551.1| peptidylprolyl isomerase [Clostridium botulinum Ba4 str. 657] gi|259534738|sp|C3KW94|PRSA_CLOB6 RecName: Full=Foldase protein prsA; Flags: Precursor gi|182673144|gb|EDT85105.1| foldase protein PrsA [Clostridium botulinum Bf] gi|229260856|gb|ACQ51889.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum Ba4 str. 657] Length = 336 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 49/394 (12%), Positives = 117/394 (29%), Gaps = 84/394 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64 K+++ ++ + L + + F + + ST+ V +K+ +KQ + Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQVV 61 Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + G + ++ ILD L++ L Q +++ + + E + Sbjct: 62 SQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKILLQKGKELKVIPKDEELNKEADK 121 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F L G ++ ++ + V+ Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +++ + + + E Sbjct: 167 -------------------EATKDVKVEDKDAQKYYNENQSMFT---------------E 192 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 K + +S ++ + EA + + L + F ++A+ Sbjct: 193 KPNTMNVS------------------------HILVKTEDEAKKVKKRLDAKEDFAKVAK 228 Query: 302 EQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 E + G + D + + +L K+G + +H FGY I +++ Sbjct: 229 EVSQDTGSKDKGGLLGDINYNDANFDPTFMKAAMAL-KEGAISNPVHTQFGYHIIKINSK 287 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 288 KEYPVKKFDAVKEDIKKQLKQEKQQEAYTKKIEE 321 >gi|206900652|ref|YP_002251221.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12] gi|206739755|gb|ACI18813.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12] Length = 355 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 43/391 (10%), Positives = 114/391 (29%), Gaps = 91/391 (23%) Query: 9 SRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + KI +V F++ G ++ + V+ + V + + Sbjct: 2 KKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFIKTQY 61 Query: 68 SQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PL 124 S G + + + + + ++ + ++ + + G+ V + Sbjct: 62 SIMFGVDFTTTQGQKMLSQVKEETIKDIARWKIVQAETKKRGISVSEKEVETRLKEIEKE 121 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F F L++ G + + + K L ++ Sbjct: 122 FPSVL------QFEITLSQYGYDRNTFKEELRKNLLMRKLM------------------- 156 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + + + +++ + + P+ ++ Sbjct: 157 ---------------DEIGKDEKVTEDEIKKYYNENIKLFEHPKEYKVYS---------- 191 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 + ++K+A E + L K F A++ Sbjct: 192 ------------------------------IFIKDEKKAKEVYNELLSNKITFTDAAKKY 221 Query: 304 GKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + S LG ++ +P+ + F+L + I GY I V+ IK + Sbjct: 222 SEDTTTKDSGGDLGFITQGTLPE-EVEKVTFTLPLN-QISKPIKTDEGYYITKVTEIKEA 279 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +T + + K +I +++ K S+ + + Sbjct: 280 YTTPYFQAKAEIEDKLLYDKRSKVFNKWLEE 310 >gi|148262225|ref|YP_001228931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146395725|gb|ABQ24358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 345 Score = 123 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 126/390 (32%), Gaps = 80/390 (20%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 + K +++ + ++ + + V + ++ +I ++ Sbjct: 27 STFVKTIVIIAIALLPLTARAELVSGI-----AAIVNDDIITTYEVD----RDAALIGKE 77 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 + +E A L K L L+ ++Q I+++ + V I K N Sbjct: 78 MEKRAPAEAADKAALRKTALSRLIDKKLIEQKIKELDIRVPEEEVRQSIEDV----KKQN 133 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 K + + V+ LA +G++ +Y + L R ++ Sbjct: 134 KLTQEALVAALAAQGLSFDQYKAQLKEQLERLRLMSQ----------------------- 170 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 V A + ++++ + Y E+ R I F + +K + EI+ Sbjct: 171 ----------EVRAKIQVGEREMREYYDANRAKYGEEEFTRARQIYFKIDKKAAESEITR 220 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--- 307 A Q K GK F +LA++ Sbjct: 221 ----------------------------VTAAAANVLQEAKSGKDFAELAKKYSDDPAAA 252 Query: 308 -SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LG+F + + + ++ ++ K G+ + ++ G I + F+E Sbjct: 253 KDGGELGTFKRGDMI-PEIERALDTM-KPGEISDLVRTPAGIHIIKLEERTKGKAKPFEE 310 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLA 396 VK +I + + K+ ++ + L + A Sbjct: 311 VKAEIEDFLYKKKSEDRFNQWVNDLRKGAA 340 >gi|294054630|ref|YP_003548288.1| hypothetical protein Caka_1097 [Coraliomargarita akajimensis DSM 45221] gi|293613963|gb|ADE54118.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM 45221] Length = 553 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 81/578 (14%), Positives = 160/578 (27%), Gaps = 85/578 (14%) Query: 1 MLEIIRKA---SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 M+ I+ W+ LV++ V F+ + + + ST + Sbjct: 1 MISWIQHHLIRHGRWIFITLLVIIVVAFVFT-IGNTPGCTTNRSTY---------QAQNF 50 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGL----DKKILDNLVSGATLDQFIEDIGL-EADH 112 + Q +G VN + G D++ L + +G+ Sbjct: 51 FGYDLNSPRDRQILGQKVNLSSIINTGRPIVSDQQYQVQLPQRIAMLFLAGQLGIPTPTQ 110 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + I P+F G D +FS D F + N + + +L + + Sbjct: 111 EELSEYIQTKPIFFGPDGQFSRDTFTNVTDNLESNPEFPRGLFVTVLEEDYRIDQVRAVV 170 Query: 173 RPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 +L R + Y L P+ A L ++E K +Y P Sbjct: 171 SGPGFVLPAEARVQTQRNQTSYKLSTASLAYSTFSPELAPAEADLKAYYETNKQSYEIPV 230 Query: 229 YKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQL------------ 275 + Y+LF EL+ + N+ ++ S Q Sbjct: 231 RVKSEYVLFKSEAYLDSSKTYDESELRDHFIANRARFVSEYEAKQPQAEPAAEGEAAPEK 290 Query: 276 -----------------VFPNQKEADEAFQSLK----------KGKKFIQLAEEQGKSLS 308 + K A+ A Q+ + F L E SL Sbjct: 291 AAVTYENVKDAVAQDYALVQAAKTANNAAQAFALTLYNDFIEQDSEAFKALLAEYKVSLQ 350 Query: 309 DISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 + + + ++ FSL +T + GY + + P+ F+ Sbjct: 351 AVEPFTQADTAQRNLPAEMLTEAFSLPSNRYYTSAYPTADGYAVLFRTGTIPAEIPPFEV 410 Query: 367 VKKDIANQMRITKASEKVKE----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 V ++ + + + + L+ L+ G S E + + +F Sbjct: 411 VAAEVTTAYKADEKRKLFNDNGLRLKDELDTQLSAGKSFKEAAEGLGLQVQSFDRFEFTE 470 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 A L + + D ++ +P E+ Sbjct: 471 --------APAELNRSALDQAQNLEAGAVSSMISTQDDLGLFVFVEEKIVP-------EI 515 Query: 483 LTDVKKDWKTVKTAEEVSS--KANQLVLEYSKEGKNFR 518 + + + + ++S A L E +G Sbjct: 516 TDENEDFAQAEQWLSQLSQYISATALSSELMSQGTEVE 553 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%) Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY-----SKEGKNFRDIGKNLGASLLTTN 532 E V V +D+ V+ A+ ++ A L ++ + F+ + SL Sbjct: 294 TYENVKDAVAQDYALVQAAKTANNAAQAFALTLYNDFIEQDSEAFKALLAEYKVSLQAVE 353 Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592 + D + + +++ FS P Y V T + + + + Sbjct: 354 PFTQADTAQRNLPAEMLTEAFSLPSNRYYTSAYPTADGYAVLFRTGTIPAEIPPFEVVAA 413 Query: 593 YLTQMMNKDLLDSVIAY 609 +T D + Sbjct: 414 EVTTAYKADEKRKLFND 430 >gi|198275842|ref|ZP_03208373.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135] gi|198271471|gb|EDY95741.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135] Length = 712 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 94/720 (13%), Positives = 224/720 (31%), Gaps = 124/720 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F+ L G V V + + + Sbjct: 4 LQKIR--SKGPLLVIVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGEVLSAQDYQKMVD 61 Query: 62 QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119 + +I G + ++ + ++ + V+ + + E +GL+ + I Sbjct: 62 ELSEVIKLTNGLNSLTEDQLN--NVKDQVWQSYVNNKLIAEQAEKLGLKVTDAEIQSIID 119 Query: 120 -------ARSPLFHGKDNKFSHDVFVSRL---AREGIN--EKEYIDHYTKM--------- 158 ++P + + F D+ L A + +Y+++Y KM Sbjct: 120 QGTHPLLMQTPFRNPQTGMFDKDMLKKFLVDYANLNASQMPAQYVEYYQKMGAFWQFVEK 179 Query: 159 -LSRTDV----VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAV 212 L+++ + + + + + + A E + + + + S++ Sbjct: 180 TLAQSTLAEKYQNLVAKSLISNPVAAEDAFNSRTEQSDLLLAGVPYSSINDSTIQVSDSE 239 Query: 213 LTQWFEKYKDNYRA-PEYKRISYILF-----DVHEKEKKIEISN---------------- 250 + + + K+ ++ E + I YI D K + E++ Sbjct: 240 IKDRYNEKKEQFKQLVETRDIRYIDVKVVPSDADRKAVEKEVTEYSNQLASTTADFGTFV 299 Query: 251 --------------------DELQA-------------EYEKNKEKY---------FSPE 268 ++ + Y + + + SP+ Sbjct: 300 RSTGSSVNYSDVPVSKSVFPADVASRLDSTNVNEVYGPYYNQTDDSFNAFKLLAKVSSPD 359 Query: 269 IRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI 320 Q+ + AD + +LK G F +A+ G++ + ++ S+ + Sbjct: 360 SIQFRQIQVYADTEEKTKTLADSIYNALKGGADFAAVAKIYGQTGEATWVNAQSWEGSEL 419 Query: 321 PDVSLADSIFSLAKK--GDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRI 377 D + I +L + + + G +I V N K T VK+++ Sbjct: 420 -DADNSKFINTLLNQPVNELANLNMGQAN-LILQVMNKKSMQTKYKVAVVKREV------ 471 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 + E Y + +F+A T++D + + + L + V + Sbjct: 472 EFSKETYNAAYNKFSQFVAQNTTIDSMVKNAEESGYTL--MPRTDLSSAEHYVGGVRSTR 529 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + L +F + M V + + A R + V ++ + + K AE Sbjct: 530 EALKWIFAAKPGEVSPLYECGENDHLMVVALDKIHEAGYRDINSVAEMLRAEIRRDKKAE 589 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 ++ + + +G + I+ + G V + Sbjct: 590 KIMEEMKKYNSIAQVKGMKDAVSDSVKHVTFSAPAYISVTRSSEPVIG-----AVAAKTA 644 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 PI+ + +V + G + + + + LT M + + +I L + V Sbjct: 645 ANKVSAPIKGNGGVYMIQVYAKEKGSEKFDAKQEEATLTNMAVRIAGNQLINDLYQKAKV 704 >gi|114566203|ref|YP_753357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337138|gb|ABI67986.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 324 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 102/367 (27%), Gaps = 90/367 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG---------LDKKIL 90 S ++ V + + + + + + + ++A S G L + Sbjct: 27 SPSIAEVNSEIITQEQYDKACQNLKQAYEVQNPAQ-SGDKADSSGKIDSEMEKRLQDQAF 85 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150 D+LV A L Q E G++ + I F D + L +NEKE Sbjct: 86 DSLVMQALLRQDAEKRGIKIKEKEIDVAIDS---FKANLAAEGKDAYQKFLQENNLNEKE 142 Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 + L + + Sbjct: 143 LREEARMQLLVNQLQKKINASI----------------------------------TIEE 168 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 L Q++++ +++ Sbjct: 169 EELQQYYQENIASFQ----------------------------------------EAAGM 188 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 + ++ KEA E L++G F QLA+E S LG ++ + Sbjct: 189 QISHILVATDKEARELLTQLQQGADFAQLAQEHSSCASKAQGGYLGVVNENSNYVPEFKN 248 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + L + FGY I ++P+ T SF EVK I Q+ K + + Sbjct: 249 AALQLKAGEITQEPVKSDFGYHIIKAGQLQPTTTKSFDEVKNQIRMQLEKEKENTLFSQY 308 Query: 388 YKRLEEF 394 + L + Sbjct: 309 MEDLRQQ 315 >gi|326792525|ref|YP_004310346.1| copper amine oxidase-like domain-containing protein [Clostridium lentocellum DSM 5427] gi|326543289|gb|ADZ85148.1| copper amine oxidase-like domain-containing protein [Clostridium lentocellum DSM 5427] Length = 444 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 31/269 (11%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPA----I 205 L ++ + S ++AK++ + + VDYI+ N + Sbjct: 160 AKEILTQLDYEMMMLQYQYQYDDSFFETEEAKQYMEQRKGELVDYIIKNKVALIKGRELK 219 Query: 206 ADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFD----------------VHEKEKKI 246 +P+ + F K K++Y E ++ L K I Sbjct: 220 LEPTVTEVNNEFNKTKEDYETAAEFEKALVNSGLTTEGYKTQIKDSLTISNVAKYISKNI 279 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +++ E++A YE N Y P + ++ ++EA KG F +LA++ G Sbjct: 280 PVTDAEIKAYYESNSGNYTMPPGAEMAHILVATEEEAKAIKAEYDKGTSFAELAKKYGTD 339 Query: 307 L---SDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFT 361 + LG + D D +L ++G + + FG+ + V N+ K ++ Sbjct: 340 GTKDTGGELGYIAYDSSYYDQDFLDGAKTL-EEGQVSNPVKTQFGWHLIKVLNVHKEAYK 398 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 V +E+K+D+ N + KA+E + Sbjct: 399 VLLEEIKEDLKNIIISEKATEFIYSQLDE 427 >gi|28209982|ref|NP_780926.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani E88] gi|28202417|gb|AAO34863.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani E88] Length = 246 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 91/239 (38%), Gaps = 11/239 (4%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-- 224 G + ++ L+ + R + R S ++ + + K + Sbjct: 6 AVFNGRKITDGDLNNTIAQFPAERQQFFKTEEGRKNLLNEIISFELIHDYAKDNKFDLDD 65 Query: 225 ----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + K+ + I + + + + EI ++++ Y NK + E + + ++ + Sbjct: 66 LYLEKIEAIKKETLIQWTISKVLSEAEIKEEDIKEFYNNNKNMFIEEERVSTKHILVETK 125 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337 +EA+ +K G F + A+E S LG+F + + ++ F + K+G Sbjct: 126 EEAENIVDEIKNGLSFEEAAKEYSNCPSKGAGGDLGTFGRGRMVK-EFEEAAFEM-KEGT 183 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + FGY I + T + EVK I Q+ K + K+ + L+ + Sbjct: 184 ISNPVKTQFGYHIIKLEKKYAKGTKEYNEVKDLIKKQLHQEKERDLYKKFTEDLKNKYS 242 >gi|77917707|ref|YP_355522.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus DSM 2380] gi|77543790|gb|ABA87352.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus DSM 2380] Length = 316 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 123/354 (34%), Gaps = 73/354 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + + + + L +Q+ G + L K+LD L+ L Sbjct: 24 SRIAAIVNQDIITTAQLDREIDKMLSAEAQETGIT----PVQREELRHKMLDKLIEDTLL 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q IE +GL V I N + + L +GIN +Y + + L Sbjct: 80 NQRIEKLGLHVSDEAVEQAINDVQA----QNNITREQLKQALVAQGINFDDYRERLRQQL 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++G R + + + +N + ++ Sbjct: 136 LNFQLIG---------------------------------REIQSKVEVTNTEMRDYYRS 162 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + D+YR Y R+S I F + +I+ +A Sbjct: 163 HLDDYRNDPYLRLSRITFRLPPGNTPADIAAMRAKA------------------------ 198 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 +A Q L++GK F+++ + + + +G ++ + + S +I L+ G Sbjct: 199 ----ADALQQLRRGKDFLEVLMQNAATSGVDGGDMGKITEGSLSE-SFNRAISGLS-VGQ 252 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +I G+ + + P T +F+ VK+ I+ ++ K + + E + L Sbjct: 253 VSEIIETPEGFHLLRLDERNPGDTQTFETVKEQISRKLMEDKRAAALTEWTENL 306 >gi|313888122|ref|ZP_07821796.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845812|gb|EFR33199.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 362 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 128/394 (32%), Gaps = 97/394 (24%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-- 75 + V + G S S + VG ++P + F S+ + ++ G V Sbjct: 6 FGKIAVTIALAG-SLVACSGANKDAAAKVGGVEIPMADFYKSYAARVNQLTSMYGEDVLK 64 Query: 76 ---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + +++ L ++ + +L + L Q E + V ++ + Sbjct: 65 NKEDGKKSTDELLREQAITDLTTTEALKQDAEKSKITVSDEEVNKKLDEIKA---QLGG- 120 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + F L G+ KEY+ + + +VG + Sbjct: 121 -EEAFNKFLKENGL-PKEYVA---ENMKNQMLVGKYT----------------------- 152 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + +P+ + + +E KD+Y Sbjct: 153 -------QEKLKELEPTEEEVKKQYEDNKDSYY--------------------------- 178 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308 ++ + KEA+ + + KG+ F +LA+E K Sbjct: 179 ----------------KAKASHILVDDLKEANVLRKKILKGEDFAKLAKENSKDTGSAQN 222 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 SLG F+ + + + I + K GD + I FGY I + + KP + F VK Sbjct: 223 GGSLGEFTSGQMVE-AFDKEIAKM-KVGDISEPITTQFGYHIIKLEDKKP---LEFDAVK 277 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 I Q++ K E + + K + + + TS + Sbjct: 278 DQIKAQLQQEKFKEYIDKVKKDAKIKIYVNTSKE 311 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 30/250 (12%) Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDD 448 L+ S DE+ R + I + + V+ ++L + G ++ Sbjct: 63 LKNKEDGKKSTDELLREQAITDLTTTEALKQDAEKSKITVSDEEVNKKLDEIKAQLGGEE 122 Query: 449 PLSKDHTVALPDGSYMW------VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 +K Y+ + + + + ++LE +VKK ++ K + +K Sbjct: 123 AFNKFLKENGLPKEYVAENMKNQMLVGKYTQEKLKELEPTEEEVKKQYEDNKDS-YYKAK 181 Query: 503 ANQLVLEYSKE----------GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 A+ ++++ KE G++F + K + F + + Sbjct: 182 ASHILVDDLKEANVLRKKILKGEDFAKLAKENSKDTGSAQ----NGGSLGEFTSGQMVEA 237 Query: 553 FSGPVEMVKCF----PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 F + +K PI Y + K+ + K E D + + ++ I Sbjct: 238 FDKEIAKMKVGDISEPITTQFGYHIIKLEDKKPL---EFDAVKDQIKAQLQQEKFKEYID 294 Query: 609 YLKSQYSVTV 618 +K + + Sbjct: 295 KVKKDAKIKI 304 >gi|170756164|ref|YP_001783178.1| peptidylprolyl isomerase [Clostridium botulinum B1 str. Okra] gi|226712003|sp|B1IGZ5|PRSA_CLOBK RecName: Full=Foldase protein prsA; Flags: Precursor gi|169121376|gb|ACA45212.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum B1 str. Okra] Length = 336 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 120/395 (30%), Gaps = 86/395 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64 K+++ ++ + L + + F + + ST+ V +K+ S +Q L Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61 Query: 65 GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I + G SE+ + K+IL+NL++ L Q +++ + + E + Sbjct: 62 SQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F L G ++ ++ + V+ Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240 V + +++ + + + P +S+IL Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + EA + + L + F ++A Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227 Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +E + G + D + + +L K G + +H FGY I +++ Sbjct: 228 KEVSQDTGSKDKGGLLGDISYSDSNFDPTFMKAAIAL-KSGAISNPVHTQFGYHIIKINS 286 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321 >gi|134297991|ref|YP_001111487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum reducens MI-1] gi|134050691|gb|ABO48662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum reducens MI-1] Length = 344 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 58/364 (15%), Positives = 126/364 (34%), Gaps = 73/364 (20%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLV 94 + ++ V +V + + Q + Q+ GF + ++ +++ L++ ILD+++ Sbjct: 25 NNKANVVATVNGKDITRQQLDKQTNQMVERYKQQ-GFDLTTKENKAMKEQLEQSILDDMI 83 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + L Q E L + +A K + + + L + E E + Sbjct: 84 TKELLLQEAEKQKLIPAKEAIDKNMAEI-----KKGFPNEEEYKKALEESKVTEAELREQ 138 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 +LD++ R +E + D + P++ +T Sbjct: 139 L----------------------ILDESSRKLYEKVTAD-----------VKKPTDEEIT 165 Query: 215 QWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 +++ + K PE + ++LF ++ + + R Sbjct: 166 KFYNENKGREPIGTPERLEVKHMLFAINSDQPGVP---------------------KRGE 204 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADS 328 ++ + + E Q KG+ F +A E+ L G D + + Sbjct: 205 KEALEAAKLALAEVTQ---KGRDFGVVAREKSDDLGTRENGGSYTIDRGANTTDPAFEKA 261 Query: 329 IFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 +L K G+ T + ++G+ I + + P+ T + EVK IA Q+ K + Sbjct: 262 AENL-KPGEITKEPVKSAYGFHIIKLEKVTPASTKALTEVKDSIAAQLEGEAKQAKFTQF 320 Query: 388 YKRL 391 L Sbjct: 321 IDNL 324 >gi|304315716|ref|YP_003850861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777218|gb|ADL67777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 323 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 85/201 (42%), Gaps = 15/201 (7%) Query: 201 HVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFDV-HEKEKKIEISNDELQAEY 257 ++ +T + K ++ E + + ++ + K +++++ E + Y Sbjct: 117 AEKEKFTATDKEITDEYNAEKATNSKVTKEMAKDNVLINKLVDSWTKNVKVTDSEAEKYY 176 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLG 313 NK ++ E+ ++ ++K A+E + L+KG F +LA++ S LG Sbjct: 177 NDNKSQF---EVVKASHILVSDEKTANEIYDKLQKGANFAELAKQYSIDTSTKDNGGELG 233 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 F++ + ++ F+L K G+ + + +GY I T SF +VK I + Sbjct: 234 EFTRGTMV-TEFENAAFAL-KPGEISKPVKTQYGYHIIKSEGKT---TKSFNDVKSSIIS 288 Query: 374 QMRITKASEKVKEDYKRLEEF 394 + TK + + L++ Sbjct: 289 YLENTKKQNIFNQKSEALKKA 309 >gi|91200985|emb|CAJ74042.1| hypothetical protein kuste3282 [Candidatus Kuenenia stuttgartiensis] Length = 582 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 66/520 (12%), Positives = 154/520 (29%), Gaps = 100/520 (19%) Query: 9 SRTWVAK---IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 S +W+ K I +++ +WG+S + + + V +K+ F Sbjct: 3 STSWLQKNKKIVYIIMIFAVSVWGISFSAMELIPKKPIAKVLGRKITQDEFTE------- 55 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + +R + I+ + + + +GL V + R F Sbjct: 56 -------MAIRWQRLFFPQTQESIIPIVWKQFLMVEKANQMGLMITSPEVEDGLRRI-AF 107 Query: 126 H--GKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 G+ + + L + + + L + + + ++ L Sbjct: 108 QVFGQTPELEKRRLMQFLCNTFKLTPDQIQRTIREALLVEKLESLLRSSTKVTSEELWYR 167 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRI 232 E + + L + L ++ KYK+ Y PE +I Sbjct: 168 FSLENEQVKLKIMALKASDFADTVQVNEEELIAFYNKYKNKEYDAHSGTPGYMLPEMVKI 227 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 ++ + + ++++ ++++ YE NKE + Sbjct: 228 ECLIAKFDDMQALVDVTKEDIKKYYEDNKETQYK-------------------------- 261 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 ++ E+ +P+ K+ D + V Sbjct: 262 -IDPAEITTEESS--------------VPEDKTETMSEGDTKEKDLSHVYK--------- 297 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 S+ VK +I + A EK E +++E + ++ + Sbjct: 298 ----------SYDAVKDEIRKILAGQMAREKASEVIHKVDEEIYATIDKEDRPNFSDLAV 347 Query: 413 I-DLPLVDFAGKDVKGKEVAA------IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 L AGK+ K + +A P +++ F ++ + +G ++ Sbjct: 348 KYKLTRTIPAGKESKREFLAESDLWEIFPGSDKISKVAFDREK-FEPSMPLEFVEG-FVI 405 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 Q+ + EE+ V +D K ++ A + Sbjct: 406 FQVIDKKYPAPAPFEEIKNKVLRDITIEKGLQKSIEIAEK 445 >gi|120437303|ref|YP_862989.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella forsetii KT0803] gi|117579453|emb|CAL67922.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella forsetii KT0803] Length = 706 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 85/596 (14%), Positives = 209/596 (35%), Gaps = 59/596 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR+ R+ I + + F++ + + + S S +T+ +V ++ F Sbjct: 4 LNKIRQ--RSVFLIIIIALALFSFVLADVIRNGGMASQSSQNTIATVNGNEIGREEFA-- 59 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +E+ + +G +++ +A +I + + L++ +E +G+ A +V + Sbjct: 60 --REVEAFERNMGNNMSTTQAV-----NRIWEQKLRQVILEEEVEKLGIRAGEAQVTQLV 112 Query: 120 ----ARSPLFHGKDNKFSHDVFVSRLAREGINE-------KEYIDHYTKMLSRTDVVGMF 168 A +P F + F + +A +++ + + M Sbjct: 113 RTQMANNPNFTNEAGMFDENRLREYVANLKETSPQAYEQWQQFTSNLAETAKMNSYYNMV 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAP 227 G+ + + +QA R +N ++ ++ + VP + + + + + + + + Sbjct: 173 GAGVGATLIEGEQAYRLQNDNINMKFVQVPYSSVPDSEVEVTKSDIKSYLDNHSSRFETE 232 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 + + Y++F+ + + L + + E + A++ Sbjct: 233 ASRSLQYVIFEESASGDDKTEAKETLNSLRNQRVE--------------YNAAVGANDTL 278 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + L + F ++ + A++IFSL +G+ + Sbjct: 279 AGFDNTDDYATFV-GNNSDLPFENRFKFRNDFSGNN--AEAIFSL-NEGETYGPYEENGY 334 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + ++ V K VK ++ + + S+ + EE L S+ + + Sbjct: 335 WKLSKVIQTKNIP----DSVKA--SHILVTYQGSQLGAGVSRSKEEAQVLADSIAGVVKG 388 Query: 408 EKIVSIDLP---LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + +L D + K+ G +P F + D+ V P G ++ Sbjct: 389 DNAKFAELASEFSADGSNKEQGGDLGYFVPGTMIPAFDNYVFDNSTGDVGVVETPLGYHV 448 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 ++ AR K+ + +++ + KT + ++ + E S +F DI K Sbjct: 449 ISIDDQTEAARAVKVATIAKEIQA---SEKTMNNLFNEVTKF--EISASEGDFGDIAKQG 503 Query: 525 GASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 + T + ++ G I F ++ E YVV ++T+ Sbjct: 504 NYEVRTVKDVKALEENIPGAGAQRRVIQWAFEDEAKVGDVRRFETNNGYVVAQLTS 559 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 86/226 (38%), Gaps = 31/226 (13%) Query: 291 KKGKKFIQLAEEQG---------KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 F +A++ K+L + G+ ++ + + D K GD Sbjct: 491 ASEGDFGDIAKQGNYEVRTVKDVKALEENIPGAGAQRRVIQWAFEDEA----KVGDVRR- 545 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + GYV+A +++ + +S +E ++ +R K ++ +K+ K G+S+ Sbjct: 546 FETNNGYVVAQLTSKRDKGLMSVEEASGEVTPILRKEKKAKLIKDRLK--------GSSL 597 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 EI+ + + + V+ + +A + +++ VF + P +A G Sbjct: 598 QEIANNQGVSVQNADAVNLSS-----PTLAGAGEEPEVVGAVFSLE-PGKVSSPIAGEKG 651 Query: 462 SYMWVQIKESIPARD---RKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 Y+ + + + + + ++ T++ + + KA Sbjct: 652 VYVAELVSKFEAPTMDSYKGFAQQESAARRAQATMRIFDALKKKAE 697 >gi|115375725|ref|ZP_01462979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] gi|310825132|ref|YP_003957490.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] gi|115367288|gb|EAU66269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] gi|309398204|gb|ADO75663.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] Length = 322 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 72/359 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS-VGLDKKILDNLVSGAT 98 V R + S EL ++ G RA + K+ LD L++ Sbjct: 25 DRVAAVVNRDIITLSEVNQRAAPELSRLA---GEKDPRRRADGRAQILKQSLDVLIAEKL 81 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 ++ I ++G+ V +A ++ + + F L REG K Y + +K Sbjct: 82 IEAEIRELGMTVSPSEVDEAMADV---RKQNGVETPEQFEQLLQREGYTLKSYREFLSKQ 138 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++R ++ M VG S L + Sbjct: 139 IARGRLMQMKVG---------------------------------PKVKVSEEDLKAAYA 165 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +Y +IL V K + ++ + K + + E R Sbjct: 166 QYAKLEGGEAEVHARHILVSVDPKATQEQVDAA-------QKKAQAIAEEARR------- 211 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 G F LA + + LG F + + + + F+L K+ Sbjct: 212 -------------PGMDFASLARARSEGPSAEDGGDLGFFRRGVMV-PAFEKTAFAL-KE 256 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + I +FG+ + V + F++++ + Q+R K + + + + L + Sbjct: 257 GEVSEPIRTNFGWHVLKVEERRAVGVAPFEDLRAKLEQQLRQDKTEKYIDQYVQELRQK 315 >gi|310658175|ref|YP_003935896.1| ppic-type peptidyl-prolyl cis-trans isomerase [Clostridium sticklandii DSM 519] gi|308824953|emb|CBH20991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium sticklandii] Length = 249 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 16/227 (7%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + +N +Q K+ + V+ + + + + ++A FEK K+N+ Sbjct: 28 LNPQIAANFQGEQGKQALLQEL-VNQKLFYLEALESSIE-NDAKFQSEFEKLKENFVTQ- 84 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + + ++++EL+A Y +NKE + SP+ ++ + A+E Sbjct: 85 --------YSIQNLINSVSVTHEELEAYYNENKEGFISPQKVQASHILVSDVSLAEEVKG 136 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L +G+ F LA+E S LG F + + ++ F +A G+ + + Sbjct: 137 KLAQGESFEALAKEYSSCPSKERGGDLGMFGEGQMV-PEFEEAAFKMA-VGEISEPVETQ 194 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I V++ + S +SF+EV+ ++ M K + L+ Sbjct: 195 FGFHIIKVTDKQESGLLSFEEVRSNLLRNMMAEKQGAIYQNHIADLK 241 >gi|168181007|ref|ZP_02615671.1| foldase protein PrsA [Clostridium botulinum NCTC 2916] gi|226950994|ref|YP_002806085.1| peptidylprolyl isomerase [Clostridium botulinum A2 str. Kyoto] gi|254783410|sp|C1FNE4|PRSA_CLOBJ RecName: Full=Foldase protein prsA; Flags: Precursor gi|182668154|gb|EDT80133.1| foldase protein PrsA [Clostridium botulinum NCTC 2916] gi|226843437|gb|ACO86103.1| prsA family protein [Clostridium botulinum A2 str. Kyoto] Length = 336 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 55/395 (13%), Positives = 120/395 (30%), Gaps = 86/395 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64 K+++ ++ + L + + F + + ST+ V +K+ S +Q L Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61 Query: 65 GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I + G +E+ + K+IL+NL++ L Q +++ + + E + Sbjct: 62 SQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F L G ++ ++ + V+ Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240 V + +++ + + + P +S+IL Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + EA + + L + F ++A Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227 Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +E + G + D + + +L K G + +H FGY I +++ Sbjct: 228 KEVSQDTGSKDKGGLLGDISYSDSNFDPTFMKAAIAL-KSGAISNPVHTQFGYHIIKINS 286 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321 >gi|116626458|ref|YP_828614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] gi|116229620|gb|ABJ88329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] Length = 418 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 57/355 (16%), Positives = 113/355 (31%), Gaps = 71/355 (20%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V + +QE+ +++ G + +L + L Q Sbjct: 30 AAKVNGDIITRGELEKK-RQEIEAEAKRQGLTGARLQDAVKEAHADVLSKEIDTLLLVQK 88 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSR 161 +D+ + V +A + D F + + G+ +++ + Sbjct: 89 GKDLNISV-DADVTRRLAEI---QVQQKISDPDKFQQFIREQTGMTFEDFKQQMKNEMLT 144 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 V+G V A L ++++++K Sbjct: 145 QRVIGQ---------------------------------EVMRNITVPEAELQKYYDEHK 171 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + E +I IS + SPE V +K Sbjct: 172 SEFMRKE----------AQVFLSQIVISTE------------GKSPEQ------VAAAEK 203 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDF 338 +A + KG+KF LA + + G + + D ++ + +F AKKG Sbjct: 204 KAKDLVARANKGEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKAIEEIVFK-AKKGFV 262 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + G+VI V + + SF EVK ++ +++ KA+ KV+ +L E Sbjct: 263 SDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTYLTQLRE 317 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 5/138 (3%) Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 K+ + KA LV +K G+ F D+ ++ + T + + K I Sbjct: 193 KSPEQVAAAEKKAKDLVARANK-GEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKAIE 251 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSV 606 ++ + P + +V+ KV + + + K++ LTQ + + Sbjct: 252 EIVFKAKKGFVSDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTY 311 Query: 607 IAYLKSQYSVTVHDNLIQ 624 + L+ + + D + Sbjct: 312 LTQLREDAFLEIKDGYVD 329 >gi|305666291|ref|YP_003862578.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170] gi|88708283|gb|EAR00520.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170] Length = 706 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 87/600 (14%), Positives = 197/600 (32%), Gaps = 65/600 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 LE IRK RT V + + + F+I G+ ++ S+V + ++ F Sbjct: 4 LENIRK--RTTVLILIIGMALFAFVISGVFTNNDFGGGKIGSSVAEINGNEISIDDFKRK 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + A ++ + ++ D V + L Q ED+G++ + ++ I Sbjct: 62 VETASNRFG---------PAASTMQVVNQVWDQEVRNSILSQQFEDLGIDIERDQIMNFI 112 Query: 120 ARS------PLFHGKDNKFSHDVFVSRLAREGI-NEKEY------IDHYTKMLSRTDVVG 166 P F ++ F + F + +A + + +Y + + Sbjct: 113 KNMPSYSQSPQFQDENGIFDENKFRNFIADLKVNSPSQYNLWLQDEQSIIQNAKQQAYFN 172 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225 + G+ + + + + + Y+ + VP + + + + + +K++++ Sbjct: 173 LVKAGVGATLKEGELDYKLANDKVDIKYVRIPYISVPDSTLNITKSEIQSYINSHKEDFK 232 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 E + I Y+ F+ + DE E E + F + + Sbjct: 233 QEEARDIQYVYFEEKASAEDENAVKDETIKLLEDTVEYREQTDKMD-TITGFRTTSDIAD 291 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH-G 344 K KF + + + + LS + AD++ +L K G+ G Sbjct: 292 FLDR-KSDIKFDTIYKAK-RDLSTV--------------FADTLVTL-KMGETYGPYRDG 334 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 F VS + T + + +A V + EE + Sbjct: 335 DF----FKVSKMVNKKTNGSAKASHILIKWKGAERAEATVTRSKEEAEEMAKGI-----L 385 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD-HTVALPDG-- 461 + +K ++ + L + + Y ++ D + T+ L + Sbjct: 386 AETKKKDAVFVELARDNSEGPSAPNGGDLGYFQEGRMVAEFNDFVFNNKVGTIDLVETAL 445 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 Y V+I + + ++ T ++ + T + + A + +E K F D+ Sbjct: 446 GYHIVKIDDKED-----IYQIATLAREIEPSENTINTLFTNATKFEMESISGEKAFTDLA 500 Query: 522 KNLGASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 K + N+I MD + + F G ++ Y + ++T + Sbjct: 501 KESEYVVRPVNKIKAMDENLPGLTTQRNIVQWAFKGDTKVGDIKRFNLNNGYAIVQMTAA 560 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 56/363 (15%), Positives = 130/363 (35%), Gaps = 36/363 (9%) Query: 271 TVEQLVFPNQKEADEAFQSL-----KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322 E V +++EA+E + + KK F++LA + + + LG F + + Sbjct: 365 RAEATVTRSKEEAEEMAKGILAETKKKDAVFVELARDNSEGPSAPNGGDLGYFQEGRMV- 423 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D +F+ K G ++ + GY I + + + + + + ++I Sbjct: 424 AEFNDFVFN-NKVGTI-DLVETALGYHIVKIDDKEDIYQI--ATLAREIEP---SENTIN 476 Query: 383 KVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + + + E E ++ + ++++ + V + + + + + + ++ Sbjct: 477 TLFTNATKFEMESISGEKAFTDLAKESEYVVRPVNKIK-----AMDENLPGLTTQRNIVQ 531 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 F D + L +G Y VQ+ + + +E+ T V + + Sbjct: 532 WAFKGDTKVGDIKRFNLNNG-YAIVQMTAAYQEGLKTVEDASTTVLPILRKER------- 583 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEM 559 KA +L+ + +GK+ DI K+ S+ + + G + + F+ V Sbjct: 584 KAAELIA--ANKGKSIEDIAKDNSVSVSNASALTVKAPTVPGAGREPAVVGTAFAMNVND 641 Query: 560 VKCFPIENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 IE + VT + P + F + L + +V LK + Sbjct: 642 TSEL-IEGESGVFMISVTKKEEAPKLDNYSTFANTLKTSNAARVNTAVYNALKEASEIED 700 Query: 619 HDN 621 + Sbjct: 701 NRA 703 >gi|153941271|ref|YP_001392892.1| peptidylprolyl isomerase [Clostridium botulinum F str. Langeland] gi|189037912|sp|A7GJD2|PRSA_CLOBL RecName: Full=Foldase protein prsA; Flags: Precursor gi|152937167|gb|ABS42665.1| foldase protein PrsA [Clostridium botulinum F str. Langeland] gi|295320869|gb|ADG01247.1| foldase protein PrsA [Clostridium botulinum F str. 230613] Length = 336 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 54/395 (13%), Positives = 121/395 (30%), Gaps = 86/395 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64 K+++ ++ + L + + F + + ST+ V +K+ S +Q L Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPNMQQVL 61 Query: 65 GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I + G +E+ + K+IL+NL++ L Q +++ + + E + Sbjct: 62 SQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F L G ++ ++ + V+ Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240 V + +++ + + + P +S+IL Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + EA + + L + F ++A Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227 Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +E + G + D + + +L K G+ + +H +GY I +++ Sbjct: 228 KEVSQDTGSKEKGGLLGDISYSDSNYDPTFMKAAIAL-KSGEISNPVHTQWGYHIIKINS 286 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321 >gi|85859367|ref|YP_461569.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB] gi|85722458|gb|ABC77401.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB] Length = 364 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 118/361 (32%), Gaps = 74/361 (20%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 V+ V K+ ++L I +++ + + K+++D+ V Sbjct: 66 GPGDPVIEVDGVKMTKGQLDTEVNRKLESIRKRVPAEKLPQ--VKTNIQKRLIDDFVVKT 123 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 L+ + + + A V + + + + L + + ++ + Sbjct: 124 LLNNEVNRLKITATEQEVNEAVEKLKSSLPANVSL-----ENLLKKNQMTREKMREEIRL 178 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++ + P+ +T ++ Sbjct: 179 GIQINKLM---------------------------------VSRTKNLPKPTEKEITSFY 205 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +K +D ++ PE + +IL + E+++ Sbjct: 206 KKNQDRFKLPEAVHVRHILIARAPDDG----------------------------EKVIA 237 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334 + +A+ + + G F +LA+ S LG S+ + D+IFSL K Sbjct: 238 EKKAKAEGLRKKILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKP-FEDAIFSL-K 295 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKRLEE 393 K PV+ +G+ + V +++ TV+ E K I++ + K E ++ L+E Sbjct: 296 KNQIGPVVQTEYGFHVVQVLDVRQPKTVALDERTKGMISSFLLQQKQQEAFRKMVASLKE 355 Query: 394 F 394 Sbjct: 356 K 356 >gi|153854234|ref|ZP_01995542.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814] gi|149753283|gb|EDM63214.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814] Length = 245 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 6/169 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ + + + +++DE++ YE NK KY + ++ N+++ E + Sbjct: 76 RKDILAQMAMRKLFATVNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNA 135 Query: 290 LKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G+K F +A+E S LG F + + D+ F+ A+ G + Sbjct: 136 ITSGEKVFEDVAKESSTCPSGANGGDLGEFGRGQMVK-EFEDAAFA-AEVGHVVGPVKTQ 193 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FGY + V + K + S +EVK I ++ K E + L++ Sbjct: 194 FGYHLIKVEDKKEAGESSLEEVKDQIRAELSQKKQEEAYRAKVDELKKK 242 Score = 40.7 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 5/160 (3%) Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + N+ + E K ++ A + ++ ++ E L TS +++ Sbjct: 88 LFATVNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNAITSGEKVFEDVA 147 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 S P G + + E F Y ++++ Sbjct: 148 KESSTCPSGANGGDLGEFGRGQMVKEFEDAAFAAEVGHVVGPVKTQF-----GYHLIKVE 202 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + A + LEEV ++ + K E +K ++L + Sbjct: 203 DKKEAGESSLEEVKDQIRAELSQKKQEEAYRAKVDELKKK 242 >gi|288959403|ref|YP_003449744.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510] gi|288911711|dbj|BAI73200.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510] Length = 374 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 10/177 (5%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 KD + E + + K + ++ + LQ Y+ ++ + E ++ + Sbjct: 171 KDEIKRAEERGVQRAFIQKEIKAR---VTPEALQKAYQDYLKENPAQEEVKAAHILVEKE 227 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +EA LKKG F +LA+E+ K LG F+K+ + + A++ FS+ K G Sbjct: 228 EEAKAIIAQLKKGGDFAKLAKEKSKDAAAAAQGGDLGYFTKDAMVEP-FANAAFSM-KPG 285 Query: 337 DFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + + FGY I V + + + EVK + + + V+E + + Sbjct: 286 EVSKEPVKTQFGYHIIKVEDRRTQPQPTLDEVKPQLEQTLSKDIVTALVEELRGKAK 342 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 2/133 (1%) Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFF 544 +++ K E +A ++ + K G +F + K Q + Sbjct: 213 AQEEVKAAHILVEKEEEAKAIIAQLKKGG-DFAKLAKEKSKDAAAAAQGGDLGYFTKDAM 271 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604 + FS V P++ Y + KV + + P D+ L Q ++KD++ Sbjct: 272 VEPFANAAFSMKPGEVSKEPVKTQFGYHIIKVEDRRTQPQPTLDEVKPQLEQTLSKDIVT 331 Query: 605 SVIAYLKSQYSVT 617 +++ L+ + V Sbjct: 332 ALVEELRGKAKVE 344 >gi|217967894|ref|YP_002353400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus turgidum DSM 6724] gi|217336993|gb|ACK42786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus turgidum DSM 6724] Length = 355 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 43/400 (10%), Positives = 114/400 (28%), Gaps = 94/400 (23%) Query: 9 SRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + KI +V F++ G ++ + V+ + V + + Sbjct: 2 KKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFMKTQY 61 Query: 68 SQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PL 124 S + + + + + +L + + G+ V + Sbjct: 62 SIMFNVDFTTTEGQKLLPKVKDETIKDLARWKIVQTEAKKRGISISEKEVDTRLKEIEKE 121 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F F LA+ G + + + K L ++ Sbjct: 122 FPSVL------QFEMTLAQYGYDRNTFKEELRKNLLMRKLI------------------- 156 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + + + +++ + + P+ ++ Sbjct: 157 ---------------DEIGKDEKVTEDEIKKYYNENIKLFEHPKEYKVYS---------- 191 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303 ++ ++K A E + L K F A++ Sbjct: 192 ------------------------------ILIKDEKRAKEVYNELTSNKITFTDAAKKY 221 Query: 304 GKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG ++ +P+ + F+L + I + GY I V+ +K + Sbjct: 222 SEDTTTKDKGGELGFITQGTLPE-EVEKITFTLPLN-QISKPIKTNEGYYITKVTEVKEA 279 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 +T + + K +I +++ K ++ + LE+ ++ Sbjct: 280 YTTPYFQAKAEIEDKLLYDKRAKVFNKW---LEDQVSKAK 316 >gi|256819263|ref|YP_003140542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga ochracea DSM 7271] gi|256580846|gb|ACU91981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga ochracea DSM 7271] Length = 705 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 96/605 (15%), Positives = 206/605 (34%), Gaps = 78/605 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 LE IR S+T + + F+I + FS + + SV + VP +F Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHNPNEIGSVNGEDVPIDAFRQQV 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q G V + E A+ + + V L+Q IE +GL + ++ +A Sbjct: 62 EN---ATRQANGQVSSIEAAKY------VWEQNVQQILLNQQIEKLGLSVEKDQILAILA 112 Query: 121 -----RSPLFHGKDNKFSHDVFVSRLARE-GINEKEY------IDHYTKMLSRTDVVGMF 168 ++P F + F + F + LA N + Y D + + + Sbjct: 113 KTPLAQNPQFVNEYGVFDANKFTNYLATLKNTNPQAYAQWKMQEDAIIEDAKQRMYFSLI 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227 G+ +N + + + Y+ L + + +++ + + +K++ ++ Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVNVTDSEIQDYIKKHEKQFKQE 232 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 Y+ I YI+ + IE + L K PE+ + N+ + F Sbjct: 233 AYRNIQYIVVSEKPSQTDIETEKESL--------LKLLQPEVVFNSK---TNKNDTIAGF 281 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K K F+ + + ++ + S AD++F+L G Sbjct: 282 AKTKNIKDFVDRHSDVPYDSTFVNKDNLR------SSYADTLFNLP-VGKVFGPYEEDGS 334 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYKRLEEFLALG 398 ++ + +P V I ++A+ + + L + A G Sbjct: 335 LKLSRMIAKQPGGAVK----ASHILIAYTGSQAATPNTTRTKEEAKAKAEELLAQAKAAG 390 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 +++R + G KG V + F ++ + V Sbjct: 391 ADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKPLEE--------FAFNNAVGTIGIVET 442 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK---TVKTAEEVSSKANQLVLEYSKEGK 515 G + V++ + E + K + T + SK ++ ++ K Sbjct: 443 AFG-FHVVKVTDK--------AEAVNIATISRKVDPSEATINSLFSKVTNFEMKAAQNPK 493 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVV 573 F +I K S+L + +++ D++ G + +F ++ +G +Y+V Sbjct: 494 EFANIAKKSELSVLRADNLHKNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKFTSGGNYIV 553 Query: 574 FKVTN 578 ++ Sbjct: 554 AQLVK 558 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 50/344 (14%), Positives = 119/344 (34%), Gaps = 34/344 (9%) Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ G F QLA E + S LG FSK + L + F+ G ++ Sbjct: 385 QAKAAGADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKP-LEEFAFN-NAVGTI-GIVE 441 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLA-LGTSM 401 +FG+ + V++ + + I+ ++ ++A+ + E A Sbjct: 442 TAFGFHVVKVTDKAEAVNI------ATISRKVDPSEATINSLFSKVTNFEMKAAQNPKEF 495 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 I+++ ++ + + ++ + ++ +F KD + D G Sbjct: 496 ANIAKKSELSVLRADNLHK-----NDDQIIGLGSNRSIVQWLFQKDTKIG-DIKKFTSGG 549 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 +Y+ Q+ + +++ VK K A + KA +G + I Sbjct: 550 NYIVAQLVKQGEEGISSVQDAAPMVKPILIREKKAAILKEKA---------KGNSLEAIA 600 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + + + + G + + F + PI+ + V ++T++ Sbjct: 601 SANKTEVKSAANLIMKNPTIIGEGREPKVVGAAFGLKQGQL-SKPIDGENAVYVIQLTSA 659 Query: 580 KVGPV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 V P + + ++ ++ L+S ++ + +L Sbjct: 660 TVAPALDNYKTYAETVEKLRTDRAAQGILKSLESTATIKENLSL 703 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 11/122 (9%) Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIF 330 ++ +K A + KG +A + + I + + + F Sbjct: 577 ILIREKKAA--ILKEKAKGNSLEAIASANKTEVKSAANLIMKNPTIIGEGREPKVVGAAF 634 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--KDIANQMRITKASEKVKEDY 388 L K+G + I G + +++ + + K + ++R +A++ + + Sbjct: 635 GL-KQGQLSKPIDGENAVYVIQLTS--ATVAPALDNYKTYAETVEKLRTDRAAQGILKSL 691 Query: 389 KR 390 + Sbjct: 692 ES 693 >gi|261418900|ref|YP_003252582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. Y412MC61] gi|297531148|ref|YP_003672423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. C56-T3] gi|319765717|ref|YP_004131218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. Y412MC52] gi|261375357|gb|ACX78100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. Y412MC61] gi|297254400|gb|ADI27846.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. C56-T3] gi|317110583|gb|ADU93075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. Y412MC52] Length = 281 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 26/200 (13%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKE 243 +++ + + ++ + + E+ K+ Y E + L Sbjct: 56 LIDEKVLSKKYKVTDEEIDREIERIKEAYGTQYDLAVQQNGEKVIREMVKLDLLRTKAAV 115 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I+++ EL+ Y+ K K ++ ++K A E L KG+ F +LA+E Sbjct: 116 EDIKVTEKELKEYYDNYKPKI------RASHILVKDEKTAKEVKAKLDKGEDFAKLAKEY 169 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG F + ++ + L K G+ + + +GY I V++ + Sbjct: 170 SQDPGSASNGGDLGWFGPGKMVK-EFEEAAYKL-KVGEVSDPVKTDYGYHIIKVTDKE-- 225 Query: 360 FTVSFQEVKKDIANQMRITK 379 SF E+K +IA +++ K Sbjct: 226 KKKSFNEMKDEIAFEVKRNK 245 >gi|325846640|ref|ZP_08169555.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481398|gb|EGC84439.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 248 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H K I++S+DEL+ Y+ NKE P+ ++ ++ EA++ + +K G +F + Sbjct: 86 MHLLFKDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEK 145 Query: 299 LAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ LG F + + +++ L +G+ + + FGY I + + Sbjct: 146 AADKYSTDKASKGGDLGEFPQGAMVK-EFEEALDKL-NEGEISKPVKSQFGYHIIKLDHT 203 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + F E+K I + + + K EK E +++E + Sbjct: 204 HDAHLPEFDEIKDRIHDTLLMIKRQEKYLEKTNKIKEKV 242 >gi|170760531|ref|YP_001788878.1| peptidylprolyl isomerase [Clostridium botulinum A3 str. Loch Maree] gi|226712004|sp|B1KTE0|PRSA_CLOBM RecName: Full=Foldase protein prsA; Flags: Precursor gi|169407520|gb|ACA55931.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum A3 str. Loch Maree] Length = 335 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 119/395 (30%), Gaps = 84/395 (21%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQ 62 +R A + ++ + L V + F + + ST+ V +K+ +KQ Sbjct: 1 MRSAKK-LLSVLCLGVFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQ 59 Query: 63 ELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + + + G + ++ ILD L++ L Q +++ + + E Sbjct: 60 VVSQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEA 119 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + F L G ++ ++ + V+ G Sbjct: 120 DKKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEATKG-------- 171 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + +++ + + + Sbjct: 172 --------------------------VKVEDKDAQKYYNENQSMFT-------------- 191 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 EK + +S ++ + EA + + L + F ++ Sbjct: 192 -EKPNTMNVS------------------------HILVKTEDEAKKVKKRLDAKEDFAKV 226 Query: 300 AEEQGKSLSDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+E + S G + D + + +L K+G + +H FGY I +++ Sbjct: 227 AKEVSQDGSKDKGGLLGDISYSDSNLDPTFLKAAIAL-KEGAISNPVHTQFGYHIIKINS 285 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 286 KKEYPVKKFDAVKEDIKKQLKQEKQQEAYTKKIEE 320 >gi|308275078|emb|CBX31677.1| hypothetical protein N47_E51890 [uncultured Desulfobacterium sp.] Length = 316 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 58/372 (15%), Positives = 120/372 (32%), Gaps = 77/372 (20%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V ++ + + +G+ ++ + K +L++L+ L Q Sbjct: 17 AAVVNGMPVYREELD---EEIIKIQKAILGYGKPLTVSKVKSVQKDVLESLIRQEILYQE 73 Query: 103 IEDIGLEADHGRVWGEIAR-SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 G++ D + EI F + + + + L R I+ + K Sbjct: 74 SLKSGIKPDEKSIDKEIKTLIGQFKSETD------YKNALNRRNISPEMLRSRLLKNNVL 127 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 +G S+ + ++++ Sbjct: 128 QQYIGRL----------------------------------AEKTSVSDNDIIEYYQGRI 153 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + ++ P R+S+I K E R EQ++ Sbjct: 154 ELFKQPLQVRVSHIFIRTDPKWD-----------------APRKQEERRKAEQIL----- 191 Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 + +K+GK F +A E LG + D L D++F L K G+ Sbjct: 192 ------KDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQL-DNKLEDAVFKL-KTGEL 243 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + ++ G+ I ++ KP +S+++VK+ I + KA + + +L E + Sbjct: 244 SNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAGKLREKATVE 303 Query: 399 TSMDEISRREKI 410 ++E KI Sbjct: 304 ILLNEEGSLAKI 315 Score = 38.0 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%) Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + D + + + P E+V +++ K E +A +L + + E Sbjct: 244 SNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAGKLREKATVE 303 >gi|257066459|ref|YP_003152715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] gi|256798339|gb|ACV28994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] Length = 359 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 65/442 (14%), Positives = 138/442 (31%), Gaps = 125/442 (28%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSS--------------------TVVSVGRQKVPFS 54 KI V+L L G + + G++ TV V +K+ Sbjct: 4 KIIPVMLMASLLFAGCNQNKDAGEGANNKTEQTEEVKDKKTEKLDDKTVAIVDGEKISKD 63 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 +K EL + + A L I+ +V + I+ ++ D Sbjct: 64 D----YKDELSFYASML--------ASQQQLKNSIVTMMVQDKLIANDIKKNDIKIDDKE 111 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V + + + + F L ++ ++ + K L Sbjct: 112 VDDALMQ--SVQNFGGQ---EQFDKTLDDYNMSLDKFKETLKKDLM-------------- 152 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 Y ++R + + + + ++FE KD + Sbjct: 153 -----------YKKHRE---------WFDSNNEVTEDEIKKYFEDNKDEFV--------- 183 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ +++ A E + + G+ Sbjct: 184 ----------------------------------KVDASHILVQDEETAKEVKEKIDNGE 209 Query: 295 KFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F +LAEE + ++G+FSK + D+ FS+ K+G+ + + FGY I Sbjct: 210 DFAKLAEEYSTDTASAKNGGAVGAFSKGQMVK-EFEDAAFSM-KEGEVSDPVKSQFGYHI 267 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V+ I SF++ K++I +++ K ++ +K+ + + S + S K Sbjct: 268 IKVNKITD----SFEDSKEEITKKIKDQKYADYIKKLHDDAN-VVTENASEKDASDDVKG 322 Query: 411 VSIDLPLVDFAGKDVKGKEVAA 432 ++ K ++V Sbjct: 323 SETEVKTEKEEDTTDKEEKVED 344 >gi|322419887|ref|YP_004199110.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320126274|gb|ADW13834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 446 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 60/355 (16%), Positives = 125/355 (35%), Gaps = 78/355 (21%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V+ V + + + K L ++ ++ E + LD L S L Q Sbjct: 157 VLRVNGSVITKQALDRAVKVMLA--QNQVKEPLSPEAQKEAEAAA--LDQLTSAELLYQE 212 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSR 161 + + ++ ++A++ KF D F+ L + ++ D + L Sbjct: 213 ASKLDMPELDKQIEEKVAQNRA------KFKTDAEFIEALKSIDMTMQDMQDFTRRDLMI 266 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + A A ++A +++E+ Sbjct: 267 NHFIEQ---------------------------------KFIAKAVITDAEAKKFYEENL 293 Query: 222 DN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 D ++ PE R S+IL EK +PE R + Sbjct: 294 DRYFKKPESVRASHILVGSDEKA----------------------TPEERK------KAK 325 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337 ++A+ + +K G+ F +A+ + S LG+F + + + + F+L K+G+ Sbjct: 326 EKAEALLKRVKAGEDFAAIAKAESSCPSASQGGDLGTFGRGQMV-PAFEKAAFAL-KQGE 383 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + V+ FGY I V+ + + F+ K IA+ ++ K +++ +L+ Sbjct: 384 TSGVVESEFGYHIIKVTEKQEAGAEKFENAKDKIADFLKKQKVQKELISYIDQLK 438 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 6/130 (4%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 + ++ KA L L+ K G++F I K + + + F Sbjct: 319 EERKKAKEKAEAL-LKRVKAGEDFAAIAKAESSCPSASQGGDLGTFGRGQMVPAFEKAAF 377 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAY 609 + +E+ Y + KVT + + KDK +L + + L S I Sbjct: 378 ALKQGET-SGVVESEFGYHIIKVTEKQEAGAEKFENAKDKIADFLKKQKVQKELISYIDQ 436 Query: 610 LKSQYSVTVH 619 LK + + Sbjct: 437 LKKSAKIEKN 446 >gi|218289330|ref|ZP_03493564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus acidocaldarius LAA1] gi|218240436|gb|EED07617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus acidocaldarius LAA1] Length = 314 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 45/371 (12%), Positives = 109/371 (29%), Gaps = 111/371 (29%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 L V + +G + G S V VGR + G Sbjct: 16 GALVVGGVWFG---TYAAHGGGSVVAMVGRTPITRQELAQ-------QSEAYAGSA---- 61 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 +L+ L++ A ++Q + A + ++ + ++ S Sbjct: 62 ----------MLEELIANALIEQAAAKQHITATDAEINQQLTAIEM---QNGITSDVQLN 108 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 S LA+ + + +++D + + + Sbjct: 109 SLLAQNHMTKAQFLDQIRDNILASKLAEA------------------------------- 137 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 ++ + ++++ + PE ++I+ Sbjct: 138 ------QVHVTDKQIESYYKQNASMFTVPETRKIAV------------------------ 167 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGS 314 + + +A++A ++ G F +A+ + LG+ Sbjct: 168 ----------------IEVKTKADAEKALAEIQSGTPFASVAKSVSIDAATRSEGGLLGT 211 Query: 315 FSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 FS++ + D ++A + F+L + G + + GY I I P V+ +I Sbjct: 212 FSEDELKAGDPAIASTAFAL-QAGAVSQPVKVQGGYEIVQCQAITPQHVQPLSAVRSEII 270 Query: 373 NQMRITKASEK 383 ++ A+ + Sbjct: 271 QDIKQQNAASE 281 Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 7/124 (5%) Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 E+ LA S + K VSID G E + F Sbjct: 175 DAEKALAEIQSGTPFASVAKSVSIDAATRSEGGLLGTFSEDELKAGDPAIASTAFALQAG 234 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 G Y VQ + P + L V +++ +D K A E +LV + Sbjct: 235 AVSQPVKV--QGGYEIVQCQAITPQHVQPLSAVRSEIIQDIKQQNAASE-----TKLVAQ 287 Query: 510 YSKE 513 +K Sbjct: 288 LAKS 291 >gi|91203827|emb|CAJ71480.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein SurA precursor) [Candidatus Kuenenia stuttgartiensis] Length = 333 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 121/360 (33%), Gaps = 83/360 (23%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 V ++ + + + + ++ + +R S ++K+I+D LV+ Sbjct: 49 GDSKKVVATINGESITKAEVE--------RVLERFKNQLPPDRIAS--VEKQIIDGLVAQ 98 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 QFI+ + + E+ D Sbjct: 99 KLFLQFIKKNKIAIGDDALKTEL---------------------------------DKVR 125 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + + + + G +L R + I L+ A S+A + + Sbjct: 126 EDIK----LNPGLQGKSLEEVLESHGSNIEDLKRDI-TISLSLEKYFAD-TVSDAKVKDY 179 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 FEK + Y E + S+IL D + + + + Sbjct: 180 FEKNRQIYDGTE-VQASHILVDTRNLQGEED----------------------------L 210 Query: 277 FPNQKEADEAFQSLKKG-KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332 +++ ++ + +G K F +LAEE S LG F ++ A++ F+L Sbjct: 211 AKAKQKIEKVKAEIAEGKKDFAKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFAL 270 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G+ + V+ FGY I V++IK + F E+K +I + A + ++ + Sbjct: 271 -KVGEVSDVVTTQFGYHIIKVTDIKKGGEIDFNELKPEIKLDILKQNADSLLDRLKQQAK 329 Score = 41.1 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 95/282 (33%), Gaps = 17/282 (6%) Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V +++ EV + + + + +++ K++ + L + ++ KI Sbjct: 53 KVVATINGESITKAEV-ERVLERFKNQLPPDRIASVEKQIIDGLVAQKLFLQFIKKNKIA 111 Query: 412 SID---LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW--- 465 D +D +D+K E++L + L +D T++L Y Sbjct: 112 IGDDALKTELDKVREDIKLNPGLQGKSLEEVLESHGSNIEDLKRDITISLSLEKYFADTV 171 Query: 466 --VQIKESIPARDRKLE--EVLTDVK----KDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 ++K+ + + EV ++ + + + K ++ E ++ K+F Sbjct: 172 SDAKVKDYFEKNRQIYDGTEVQASHILVDTRNLQGEEDLAKAKQKIEKVKAEIAEGKKDF 231 Query: 518 RDIGKNL-GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576 + + F+ V V + Y + KV Sbjct: 232 AKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFALKVGEV-SDVVTTQFGYHIIKV 290 Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 T+ K G + ++ + + K DS++ LK Q + + Sbjct: 291 TDIKKGGEIDFNELKPEIKLDILKQNADSLLDRLKQQAKIEI 332 >gi|222528654|ref|YP_002572536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor bescii DSM 6725] gi|222455501|gb|ACM59763.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor bescii DSM 6725] Length = 335 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 61/388 (15%), Positives = 127/388 (32%), Gaps = 82/388 (21%) Query: 9 SRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 RT + + + + ++ G+ + + V + V V +K+ F +++ ++ Sbjct: 3 KRTKIVLFSIAAVVLLIILIGVTPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQINYY 62 Query: 68 --SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + ++ + + +LD L+ Q + + Sbjct: 63 GIDKTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLTSAEKKAIDQQIE-- 120 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 K + S F L G E EY D + S L Sbjct: 121 QYKSDSQSGAEFRQYLQTIGATENEYKD-------------QVIKSKIVSKLY------- 160 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + ++A + ++ +K ++ + S+ILF V++ Sbjct: 161 --------------DEITKNQKATDAEVENYYSSHKSDFVE---VKASHILFKVND---- 199 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + +K+A+E Q +K G+ F +LA++ + Sbjct: 200 ---------------------------SKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSE 232 Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 LG F K + D+ FSL G+ + ++ S+GY I V++ K Sbjct: 233 DENTKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISNIVKTSYGYHIIKVTDKK---Q 287 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389 +S EVK +I + + K E + + Sbjct: 288 LSLNEVKDEIKSTIESQKKDEYYQSLLE 315 >gi|110639640|ref|YP_679850.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC 33406] gi|110282321|gb|ABG60507.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC 33406] Length = 697 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 121/351 (34%), Gaps = 33/351 (9%) Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYI 320 + + E E+ +K+A + ++ G F ++A + G + LG F K + Sbjct: 346 FRTNETDPAEKK-AEAKKQAQQILAEIQNGASFEKMAAQYGGDGTAANGGDLGWFGKGQM 404 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++IF +K G ++ FGY I V K V K Sbjct: 405 VKP-FENAIFGASKPGLLPNIVETQFGYHIIRVDVAKTGRKFLIASV----------QKN 453 Query: 381 SEKVKEDYKRL-EEFLALGTSMDEIS---RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 E + A S+ + K + + + A D K + +I Sbjct: 454 VEAFDNTVDSIYRNADAFAASVKDTGTFRTEIKKYTAGVAKYEQANVDGAAKGITSINEA 513 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 +++ ++ D ++ +V + + V + +E+V +K Sbjct: 514 REIVKWLYSDDRSVNDVSSVFTVENKNVVVLLTRIREKGTASVEDVKDQIKPRVIIE--- 570 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ----INRMDNENKFFGYDGISQV 552 +KA + + EG +F K G +T ++ N + + + + Sbjct: 571 ----AKAKLIKEKLKVEGNDFAAAAKAYGKDAVTGTASDISLSSGMITNVGYEPEAVGAL 626 Query: 553 FSGPVE-MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602 F E + F ENG +V K N V V + ++F++ L Q N L Sbjct: 627 FGLAKEKKTEAFTGENG--VLVLKNKNITVSEVADYNQFVTQLQQQRNNRL 675 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 56/488 (11%), Positives = 137/488 (28%), Gaps = 74/488 (15%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 I + S V I +L S F S ++ V + + F + Sbjct: 4 FNKINQRSGLVVGTIVAGLLLFLLGDAFTSKNSFFSSFNNKVGEIDGSNITVEEF----Q 59 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 +E+ G + +D LV E G+E G + Sbjct: 60 KEITKAEALYGGN-----GNNANMDDLAWTQLVFERVNKVVYEKAGIEISEGEKVDLLEG 114 Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-----------KMLSRTDVVG 166 + + F+ L + I +E R+ Sbjct: 115 EHMSDVVKQQFGSAEQLKQFLKYLDSDQIQSEEERASIKGRWRALKEYVYNERMRSKYET 174 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYR 225 + + + + +Y+ + + ++A+L + + +K+ + Sbjct: 175 IIKKSEYVTKAEAKRYYHALNDKAEAEYVYVPYFSINDTTITVTDAMLEDYLKAHKNEFE 234 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 + I + +F+ + + ++ + + K+++ + + AD Sbjct: 235 VEAGRSIEFAVFNNV----PTGVDSSYVKKDLAELKDEFVLA-KNDSAFIRSNSDAPADP 289 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 ++ L + +LA + SL + Sbjct: 290 SYVQLNQ----------------------------LPPALAARVNSL-QIDSVYGPFSYG 320 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK--VKEDYKRLEEFLALGTSMDE 403 GY + + I+ V + + A +K K+ +++ + G S ++ Sbjct: 321 TGYSLTKILKIESDTNV-MAKASHILFRTNETDPAEKKAEAKKQAQQILAEIQNGASFEK 379 Query: 404 ISRREK--IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 ++ + + + + + GK K +FG P + V G Sbjct: 380 MAAQYGGDGTAANGGDLGWFGKGQMVKPFE---------NAIFGASKPGLLPNIVETQFG 430 Query: 462 SYMWVQIK 469 Y +++ Sbjct: 431 -YHIIRVD 437 >gi|291279541|ref|YP_003496376.1| hypothetical protein DEFDS_1151 [Deferribacter desulfuricans SSM1] gi|290754243|dbj|BAI80620.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 314 Score = 120 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 57/389 (14%), Positives = 110/389 (28%), Gaps = 94/389 (24%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 R+ + L + V F + V + + + + + + Sbjct: 2 KRSIILGFLLAIFIVSFAF----------AEEKVAAKVNGKAI----YESEVNTVIAELL 47 Query: 69 QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 K G +S + L KKIL+ L+ L Q + + V ++ Sbjct: 48 LKNGIAPSSVDFNNPQLVEIKKKILEQLIDREVLAQHSKTFTYKGIENDVNKKLDELKS- 106 Query: 126 HGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 F D + L + + E E + K + + Sbjct: 107 -----GFKTDKEYKDALQKNNLTETELKEKIKKNILVKKQL------------------- 142 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + S ++ K KD + + + +I+ +K Sbjct: 143 ---------------DSYKSKITVSEQEKKDFYNKNKDKFVIKDSVHVKHIVLLTGDKR- 186 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 S++E + D+ + LKKG F LA++ Sbjct: 187 ----SDEEAKKLI--------------------------DKIYSELKKGVNFEDLAKKYS 216 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG ++ + F + G + FGY I V + K Sbjct: 217 EDGSAKMGGDLGYITRGKVV-PEFEKVAFE-TEVGKISKPFKSQFGYHILKVVDKKKGKK 274 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 +S+ EVK I + K +K + + Sbjct: 275 LSYDEVKDQITKILSDQKLETMIKSNIEN 303 >gi|219856704|ref|YP_002473826.1| hypothetical protein CKR_3361 [Clostridium kluyveri NBRC 12016] gi|219570428|dbj|BAH08412.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 258 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 5/160 (3%) Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + + I++++ E++ Y NK Y PE T ++ + ++A + +KKG F Sbjct: 95 TISKIMENIKVTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNEIKKGLSFE 154 Query: 298 QLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A++ S +LG+F++ + + F L + G + + FGY + V Sbjct: 155 DAAKKYSSCPSKAQGGNLGNFTRGQMV-PEFETAAFQL-EIGILSKPVKTQFGYHLIKVE 212 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + F +VK I N + K + + + L++ Sbjct: 213 KKEKDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDK 252 >gi|212696153|ref|ZP_03304281.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM 7454] gi|212676782|gb|EEB36389.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM 7454] Length = 345 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 112/357 (31%), Gaps = 104/357 (29%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V VG +K+ S +K E+ S + A L I+ L+ + Sbjct: 48 KDAVAVVGGEKISKES----YKDEMSFYSAML--------ASQQQLKPSIVQMLIQDKLI 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 ++ ++ D + + + + + F L ++ ++ + K Sbjct: 96 ADDMKKNDVKVDDKELNDKFLQ--YIQQFGGQ---EKFDKMLEDYNMSSDKFKETIKKD- 149 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + Y ++R S+ + +++++ Sbjct: 150 ------------------------QIYQKHRE---------WFEKKNPVSDKDIKKYYDE 176 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +KD ++ + Sbjct: 177 HKDTLS-------------------------------------------QVKASHILVED 193 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + A E + L G+ F +LA+E K LG F+K+ + AD F++ KK Sbjct: 194 ENTAKEVKKKLDDGEDFAKLAKEYSKDTANSAKGGDLGYFTKDKMVK-EFADKAFAM-KK 251 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + + S+GY I V + K + +K++I+ + K ++ + + + + Sbjct: 252 GEISDPVKTSYGYHIIKVEDKKDNP----DALKEEISKALNDKKYADYLTDLFNKAN 304 >gi|193213470|ref|YP_001999423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum NCIB 8327] gi|193086947|gb|ACF12223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum NCIB 8327] Length = 701 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 88/651 (13%), Positives = 197/651 (30%), Gaps = 102/651 (15%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 + +R + I L +L F+ WG++ S V +V + +P + + Sbjct: 4 MGKLRDKTH-----IVLFILVAAFVGLIVFEWGMNFTGPKQSRGGDVGAVNGEPIPAAEY 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + Q+ V + R + GL ++ + +V ++Q ++ ++ V Sbjct: 59 EQLYNMVSTSFRQRNPGVEVTSRIDA-GLREQAWNMVVDQTLINQLLKKYAVQVSDQEVL 117 Query: 117 GEIARS--------PLFHGK-DNKFSHDVFVSRLAREGINEKEY----IDHYTKMLSRTD 163 + F + ++ AR+ KE+ + + L Sbjct: 118 EAVNSEVNPPGIIRQNFTDPKTGQIDRELLEK--ARQDPQAKEFWLKAQEMVRRELMINK 175 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 ++ ++ + + + Y + +P Sbjct: 176 LLMDLKSMAIVTDPEVTELVQ-------RQYTTFSGSFIP-------------------- 208 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP----- 278 +D + ++E+ A YE +K ++ R+ E + FP Sbjct: 209 -----------FPYDFAGPASNFPVKDEEITAWYEAHKGQFQQEPTRSAEFVFFPLTPSA 257 Query: 279 -----NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 +KE D + + Q +++ ++ + IF Sbjct: 258 QDSLRAKKEIDGLVSEFASAPDEAEFVKIQSDIPDAVNVTRTRADFSLEG--GKKIFDSP 315 Query: 334 K--KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKR 390 K G + Y + + ++ S + KAS E + ++ Sbjct: 316 KLAPGQIVGPVADQGYYRLLKIKSV--STGEPMASASHILIRVNPADKASVESGQALARK 373 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + + L G S +++ + + F G K + V + VF Sbjct: 374 ILDELKNGASFAQLAAKYSQDPGNAQRGGFLGWFTKERMV------PEFTQAVFSGKPGQ 427 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLE 509 L ++I + V ++V + K + T+E + KA +V Sbjct: 428 VVGPV--LTRFGLHIIKIDGFDNRQI-----VCSEVVRQLKPSSLTSESIKRKA--MVFR 478 Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569 E K F + K ++ T R +K + ++ + I+N Sbjct: 479 DDAESKGFAETAKLQKLDVVQTGDFTRQTLVSKLGMDEDVASFAFSSKDGAISQVIKNDN 538 Query: 570 SYVVFKV-----TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 +VV K+ T ++ + K+ + L + L + +A L Sbjct: 539 GFVVMKLLTKNDTGYRLLDDELKEMIKAELVREKQGTALKAKLAELSKSSG 589 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 56/371 (15%), Positives = 122/371 (32%), Gaps = 40/371 (10%) Query: 272 VEQLVF-----------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFS 316 ++ Q A + LK G F QLA + + + LG F+ Sbjct: 349 ASHILIRVNPADKASVESGQALARKILDELKNGASFAQLAAKYSQDPGNAQRGGFLGWFT 408 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 KE + ++FS K G + FG I + V ++ Q++ Sbjct: 409 KERMV-PEFTQAVFS-GKPGQVVGPVLTRFGLHIIKIDGFDNRQI-----VCSEVVRQLK 461 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + + + + + A E ++ +K+ V G + V+ + Sbjct: 462 PSSLTSESIKRKAMVFRDDAESKGFAETAKLQKL------DVVQTGDFTRQTLVSKLGMD 515 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495 E + F D V D ++ +++ R L +E+ +K + K Sbjct: 516 EDVASFAFSSKD--GAISQVIKNDNGFVVMKLLTKNDTGYRLLDDELKEMIKAELVREKQ 573 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIG-KNLGASLLTTNQIN-RMDNENKFFGYDGISQVF 553 + +K +L G + I N G +T+ I+ R N + + + + Sbjct: 574 GTALKAKLAELSKS---SGGSLDAIVQSNPGLRKITSGIISWRDGNIDGYGSDRRLVEAM 630 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAY 609 +G P++ + + K+ ++ EK + + L ++ + L + Sbjct: 631 AGMELNKLSAPVQTSNGFALVKLDGRQLPYGLDLEVEKKRILPQLMKIKQEQLFNEYFEA 690 Query: 610 LKSQYSVTVHD 620 + + + Sbjct: 691 ARRTAKIEDNR 701 >gi|239826178|ref|YP_002948802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. WCH70] gi|259534743|sp|C5D6L9|PRSA_GEOSW RecName: Full=Foldase protein prsA; Flags: Precursor gi|239806471|gb|ACS23536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. WCH70] Length = 276 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 35/218 (16%) Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKEKKIEIS 249 + ++ + + E K+ Y E + L + I+++ Sbjct: 62 LSKKYKVTDKEIDKEIENLKEMYGTQYDLVVQQNGEKAIRDMVKLDLLRQKAAMEDIKVT 121 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGK 305 + EL+ Y+ K K ++ ++K A+E L KG+ F +LA+ + G Sbjct: 122 DKELKDYYKNYKPKI------RASHILVKDEKTAEEIKTKLDKGEDFAKLAKQYSQDPGS 175 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + + LG F + D+ + L K G + + +GY I V++ + F Sbjct: 176 APNGGDLGWFGPGKMVK-EFEDAAYKL-KVGQVSDPVKTDYGYHIIKVTDKEEK--KPFN 231 Query: 366 EVKKDIANQMR---------ITKASEKVKEDYKRLEEF 394 E+K++I +++ +K + +K+ +E+ Sbjct: 232 EMKEEIEFEVKQSKLDPAKVQSKVEKLIKDAKVEIEDK 269 >gi|91200802|emb|CAJ73856.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 424 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 118/356 (33%), Gaps = 82/356 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + SV +K+ L +++ L+K+I + LV+ A L Sbjct: 142 NKIIASVNEEKILRKDLDK----ILDRFRKQVP------PGAIPSLEKQITEQLVTQAIL 191 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 QF+ + GL+ V EI + K+ L +G N ID + + Sbjct: 192 RQFVREKGLDVADDVVNNEINKMRENIAKNPAAEGKTLEQFLEIQGSN----IDELSTAI 247 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + +V + + L +F K Sbjct: 248 RMSAALDAYVTN-----------------------------------NVDDKTLENYFIK 272 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + E S+IL +++ ++ Sbjct: 273 NINEFTGEE-VTASHILIGTKGMKEQEDLD----------------------------KA 303 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + + + + L G F +LA++ + + LGSF + + + A++ FS + G Sbjct: 304 RAKIESIKKELDNGANFAELAKKYSECPTGKTGGELGSFPRHGVMVETFANAAFS-TEVG 362 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + FGY + +V+N P+ VSF VK + ++ + + + + + Sbjct: 363 KVSEPVKTEFGYHLIYVTNHAPAKDVSFDAVKDTVREKLVAIEMGDLINDLRDNAQ 418 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 28/271 (10%) Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEFLALGTSM---DEISRREKIVSI 413 P S + K I Q+ + +E + + + + I++ Sbjct: 171 PGAIPSLE---KQITEQLVTQAILRQFVREKGLDVADDVVNNEINKMRENIAKNPAAEGK 227 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 L +++G + + + + L + Y I E Sbjct: 228 TLEQF----LEIQGSNIDEL--STAIRMSAALDAYVTNNVDDKTLEN--YFIKNINEFTG 279 Query: 474 ARDRKLEEVLTD----VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA-SL 528 EEV K K + ++ +K + E G NF ++ K Sbjct: 280 ------EEVTASHILIGTKGMKEQEDLDKARAKIESIKKELDN-GANFAELAKKYSECPT 332 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 T + + FS V V P++ Y + VTN D Sbjct: 333 GKTGGELGSFPRHGVMVETFANAAFSTEVGKV-SEPVKTEFGYHLIYVTNHAPAKDVSFD 391 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + + + + +I L+ V ++ Sbjct: 392 AVKDTVREKLVAIEMGDLINDLRDNAQVEIN 422 >gi|330752745|emb|CBL88208.1| peptidyl-prolyl cis-trans isomerase [uncultured Leeuwenhoekiella sp.] Length = 706 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 91/631 (14%), Positives = 207/631 (32%), Gaps = 76/631 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR+ R+ + + F++ + + + + SV + + F Sbjct: 4 LNKIRQ--RSVFLIAIIALALFAFVLADVLKNGGFSTEKSQRILGSVNDEDIEQQEFAGL 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115 + G + + +A + ++++ LD+ +D+G+ + R+ Sbjct: 62 VDSQTARY----GAGITTTQAVNAAWEQEV-----RRILLDEQYDDLGITVEQDRINDLL 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTDVVGMF 168 + P F D FS +A +Y + + Sbjct: 113 KEALQNDPNFQN-DGVFSEQKLREYVATLKSTNPTMYAQWVDYEKQLANNEQQQIYFSLV 171 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAP 227 G+ S A R ++Y+ + + S ++ + EK+K ++++ Sbjct: 172 KAGLNTSFKEGQMAYELENNLRDLEYVQIPYASISDDKVSVSKEDISNYIEKHKADFKSE 231 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 + + Y++F + + + K E + + ++ Sbjct: 232 ASRNLRYVMFSESASATDEDALKGSVASLLNKRVE--------------YTAATKTNDTV 277 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 L + E + K +P V++ADS+F L +G + Sbjct: 278 SGLAATTNPEEFVNEYS-DIRFAD-SYLFKNELP-VAVADSLFGL-NEGAIFGPYKDNGY 333 Query: 348 YVIAHVSNIKPSFTVSFQEVKKD--------IANQMRITKASEKVKEDYKRLEEFLALGT 399 Y I+ V + VK +AN T++ + K+ L + Sbjct: 334 YKISKVIGVSQIP----DSVKASHILLTYEGLANAASQTRSKTEAKKLADSLASVIKGSA 389 Query: 400 S-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S + E++ + D G KG+ V P+ + + G+ + + Sbjct: 390 SKLAELAPQFSADGSKEKGGDL-GYATKGRYVK--PFNDFIFNGSTGEVGVVESQY---- 442 Query: 459 PDGSYMWVQIKESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 Y ++I + R KL V +++ + +T EV + + + S++ +F Sbjct: 443 ---GYHVIRIDDQKNKQRAIKLATVAKEIEP---SQETINEVFNATTKFQMAVSEDKNSF 496 Query: 518 RDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYV- 572 + K+ ++ N I +D + + I F+ V+ F ++ G V Sbjct: 497 EKVAKSENYTVRPVNSIKALDETLPGQGSQREIIRWAFNEDTKTGDVQRFNVDGGYLVVQ 556 Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603 + T + PV + ++ + + K L Sbjct: 557 LTSKTEKGLMPVDQASPRVTPIIRNEKKAEL 587 Score = 53.8 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 82/232 (35%), Gaps = 29/232 (12%) Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--------GKKFIQLAEEQGKSLS 308 + K K + ++ TV + + P+Q+ +E F + K F ++A+ + ++ Sbjct: 449 IDDQKNKQRAIKLATVAKEIEPSQETINEVFNATTKFQMAVSEDKNSFEKVAKSENYTVR 508 Query: 309 DIS----LGSFSKEYIPDVSLADSIFS-LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 ++ L + F+ K GD + GY++ +++ + Sbjct: 509 PVNSIKALDETLPGQGSQREIIRWAFNEDTKTGDVQR-FNVDGGYLVVQLTSKTEKGLMP 567 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 + + +R K +E +K+ G ++ I+ + G Sbjct: 568 VDQASPRVTPIIRNEKKAELIKKQI--------SGKDLNAIASANNVSVQT-----ANGV 614 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 ++K +A + +++ FG D + D V++ PAR Sbjct: 615 NLKNPTLAGAGTEPKVMGVAFGLDKGAVSNPI--AGDKGVYVVKVTNVTPAR 664 >gi|299144111|ref|ZP_07037191.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518596|gb|EFI42335.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 253 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + + + S E++ Y N E Y P ++ ++ +A+E + + G+ F +LA Sbjct: 87 KLLENVSPSEKEIEEFYNANAEHYDVPNSVDASHILVEDENKANELYNKILAGENFEELA 146 Query: 301 EEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +LG F + + +FS+ K+G+ + + +FG+ I ++ I Sbjct: 147 KNNSMCPSKNNGGNLGVFHSGQMV-REFDEKVFSM-KEGEISEPVKTNFGFHIIKLNKII 204 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 PS + EV+ D+ +++ K + + L + Sbjct: 205 PSKKHTLSEVRDDVIKEVKRYKEQKIYMNKIRELSQK 241 >gi|42523892|ref|NP_969272.1| hypothetical protein Bd2456 [Bdellovibrio bacteriovorus HD100] gi|39576099|emb|CAE80265.1| unnamed protein product [Bdellovibrio bacteriovorus HD100] Length = 345 Score = 120 bits (301), Expect = 8e-25, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 1 MLEIIRK--ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M + +++ +++ A + + + F+ +G+ + + GS V V + + F Sbjct: 5 MADKMKRGINAKSVTAMVIFGAIIMVFVFFGMPGQMGAGVGS--VARVNNTLISLADFQQ 62 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + G ++ R + L ++ L+NLV + Q + G+ A V Sbjct: 63 EENRIQQYYQNLFGNQMDFGSQRQL-LRQQALENLVRMELVSQAAQKSGILATDAEVRDF 121 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + F ++ F D ++ + + + D K +S +F +P+ + Sbjct: 122 IVKDIPFFQQNGMFQKDFYMRYIEQTRTTPANFEDKVRKDISNVRTRALFELATQPTAVE 181 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPA--IADPSNAVLTQWFEK 219 L + + +V ++ +++ + ++A + E Sbjct: 182 LKKIQDLRAAKINVLFVKIDSEAATKALTKEKADAAIKALDEA 224 >gi|325846702|ref|ZP_08169617.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481460|gb|EGC84501.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 345 Score = 120 bits (301), Expect = 8e-25, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 112/357 (31%), Gaps = 104/357 (29%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V VG +K+ S +K E+ S + A L I+ L+ + Sbjct: 48 KDAVAVVGGEKISKES----YKDEMSFYSAML--------ASQQQLKPSIVQMLIQDKLI 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 ++ ++ D + + + + + F L ++ ++ + K Sbjct: 96 ADDMKKNDVKVDDKELNDKFLQ--YIQQFGGQ---EKFDKMLEDYNMSSDKFKETIKKD- 149 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + Y ++R S+ + +++++ Sbjct: 150 ------------------------QIYQKHRE---------WFEKKNPVSDKDIKKYYDE 176 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +KD ++ + Sbjct: 177 HKDTL-------------------------------------------AQVKASHILVED 193 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + A E + L G+ F +LA+E K LG F+K+ + AD F++ KK Sbjct: 194 ENTAKEVKKKLDDGEDFAKLAKEYSKDTANSAKGGDLGYFTKDKMVK-EFADKAFAM-KK 251 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + + S+GY I V + K + +K++I+ + K ++ + + + + Sbjct: 252 GEISDPVKTSYGYHIIKVEDKKDNP----DALKEEISKALNDKKYADYLTDLFNKAN 304 >gi|315224705|ref|ZP_07866528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga ochracea F0287] gi|314945333|gb|EFS97359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga ochracea F0287] Length = 705 Score = 120 bits (301), Expect = 8e-25, Method: Composition-based stats. Identities = 94/605 (15%), Positives = 204/605 (33%), Gaps = 78/605 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 LE IR S+T + + F+I + FS + + SV ++VP +F Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHTPNEIGSVNGEEVPIDAFRQQV 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q G V + E A+ + + V L+Q IE +GL + ++ +A Sbjct: 62 EN---ATRQANGQVSSIEAAKY------VWEQNVQQILLNQQIEKLGLSVEKDQILAILA 112 Query: 121 RSPLFHGKD-----NKFSHDVFVSRLARE-GINEKEY------IDHYTKMLSRTDVVGMF 168 ++PL F + F + LA N + Y + + + + Sbjct: 113 KTPLAQNPQFVNEYGVFDANKFTNYLATLKNTNPQAYAQWKMQEEAIIEDAKQRMYFSLI 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227 G+ +N + + + Y+ L + +++ + + +K++ ++ Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVKVTDSEIQDYIKKHEKQFKQE 232 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 Y+ I YI+ + IE + L K PE+ + N+ + F Sbjct: 233 AYRNIQYIVVSEKPSQTDIETEKESL--------LKLLQPEVVFNSK---TNKNDTIAGF 281 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K K F+ + + ++ + S AD++F+L G Sbjct: 282 AKTKNIKDFVDRHSDVPYDSTFVNKDNLR------SSYADTLFNLP-VGKVFGPYQEDGS 334 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYKRLEEFLALG 398 ++ + +P V I ++A+ + + L + G Sbjct: 335 LKLSRMIAKQPGGAVK----ASHILIAYAGSQAATPNTTRTKEEAKAKAEELLAQAKVAG 390 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 +++R + G KG V F F ++ + V Sbjct: 391 ADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKP--------FEEFAFNNAVGTIGLVET 442 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK---TVKTAEEVSSKANQLVLEYSKEGK 515 D + V++ + E + K + T + SK ++ ++ K Sbjct: 443 -DFGFHVVKVTDK--------AEAVNIATISRKVDPSEATINSLFSKVTNFEMKAAQNPK 493 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVV 573 F ++ K S+L + +++ D++ G + +F ++ +G +Y+V Sbjct: 494 EFANVAKKSELSVLRADNLHKNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKFTSGGNYIV 553 Query: 574 FKVTN 578 ++ Sbjct: 554 AQLVK 558 Score = 78.1 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 115/341 (33%), Gaps = 34/341 (9%) Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q+ G F QLA E + S LG FSK + + F+ G ++ Sbjct: 385 QAKVAGADFAQLARENSEEPGAVYSAGDLGFFSKGAMVKP-FEEFAFN-NAVGTI-GLVE 441 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLA-LGTSM 401 FG+ + V++ + + I+ ++ ++A+ + E A Sbjct: 442 TDFGFHVVKVTDKAEAVNI------ATISRKVDPSEATINSLFSKVTNFEMKAAQNPKEF 495 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 ++++ ++ + + ++ + ++ +F KD + D G Sbjct: 496 ANVAKKSELSVLRADNLHK-----NDDQIIGLGSNRSIVQWLFQKDTKIG-DIKKFTSGG 549 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 +Y+ Q+ + +++ VK K A + KA +G + I Sbjct: 550 NYIVAQLVKQGEEGISSVQDAAPMVKPILIREKKAVILKEKA---------KGNSLEAIA 600 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + + + + G + + F + PI+ + V ++T++ Sbjct: 601 SANKTEVKSAANLIMKNPTIIGEGREPKVVGAAFGLKQGQL-SKPIDGENAVYVIQLTSA 659 Query: 580 KVGPV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 V P + + ++ ++ L+S ++ + Sbjct: 660 TVAPALDNYKTYAETVEKLRTDRAAQGILKSLESTATIKEN 700 >gi|319957104|ref|YP_004168367.1| ppic-type peptidyl-prolyl cis-trans isomerase [Nitratifractor salsuginis DSM 16511] gi|319419508|gb|ADV46618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitratifractor salsuginis DSM 16511] Length = 287 Score = 120 bits (300), Expect = 8e-25, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 18/235 (7%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-------PSNAVLTQWFEK 219 V G + + ++ R N+ + Y +L+ + + D + A EK Sbjct: 26 AVVNGHKITKAEVNTFLRQSMPNQPITYDMLDPKTKKKVLDGLIETEILAEAAQKAGVEK 85 Query: 220 YKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K+ I ++ KKI +S E + Y+K+++K+ P ++ Sbjct: 86 NPEFQQMLDMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDKFTRPAQVHARHILVK 145 Query: 279 NQKEADEAFQSLK--KGKK----FIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSI 329 ++K+A E LK KG+ FI+LA+++ LG F K+ + + + + Sbjct: 146 SEKKAQEIIDQLKGLKGEALQKRFIELAKKESTGPTGPKGGDLGYFGKDQMV-LPFSKAA 204 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 F+L K T + FG+ + +V + KP+ T+ F VK + ++ + +EK+ Sbjct: 205 FALNKGEITTKPVKTQFGWHVIYVEDKKPAQTIPFDAVKDRVIAALKQQRFAEKM 259 Score = 38.8 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 13/155 (8%) Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKDVKGKEVAA 432 ++ K ++++ + K L+ AL E++++E + + GKD Sbjct: 144 VKSEKKAQEIIDQLKGLKGE-ALQKRFIELAKKESTGPTGPKGGDLGYFGKDQ-----MV 197 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P+ F + V G ++ +++ PA+ + V V K Sbjct: 198 LPFS----KAAFALNKGEITTKPVKTQFGWHVIY-VEDKKPAQTIPFDAVKDRVIAALKQ 252 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + AE++ + L + S + + + Sbjct: 253 QRFAEKMKKETELLKKKASITIEGAEKAAEETPSK 287 >gi|254520524|ref|ZP_05132580.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA] gi|226914273|gb|EEH99474.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA] Length = 325 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 51/388 (13%), Positives = 110/388 (28%), Gaps = 90/388 (23%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 + KI F + + + ++ + VG K+ L Sbjct: 4 IKKIIAAGALSIFAFSAVGCEMIQKTPEAIKNTVLAKVGDVKITKGEVDEIADPYLQQYG 63 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-SPLFHG 127 N + L + ++ LV + + E++G+ V E+ + Sbjct: 64 SDYDTNPNMAE-QVKALRTQAINLLVEEKMMLKKAEELGVTPTKEEVDSEVQKYIESLKE 122 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + F + L + G+ EY T+ + Sbjct: 123 SYGG--DEQFNAALEQAGMTLDEYTTKLTESMKNKLATEKVT------------------ 162 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + + ++ + ++E+ KD++ Sbjct: 163 ------------EDLFKDVNITDEDIKAYYEENKDSF----------------------- 187 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 E +V ++ +A E + + G+ F +A+E + Sbjct: 188 --------------------GEANAEHIVVSDEAKAKEIRERIINGEDFATVAKESSEEP 227 Query: 308 ----SDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S +LG D + +L K+G+ + + FGY I + +K Sbjct: 228 AAAESGGNLGVIKFNTTEYDQDFVAGLKAL-KEGEISEPVKSQFGYHIIRATKVKQG--- 283 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 +F EVK I + K +E ++ Sbjct: 284 TFDEVKDSIKTTLENQKKNEIYSSSIEQ 311 >gi|302036376|ref|YP_003796698.1| putative peptidyl-prolyl cis-trans isomerase D (fragment) [Candidatus Nitrospira defluvii] gi|300604440|emb|CBK40772.1| putative Peptidyl-prolyl cis-trans isomerase D (fragment) [Candidatus Nitrospira defluvii] Length = 232 Score = 120 bits (300), Expect = 9e-25, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 9/189 (4%) Query: 1 MLEIIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M++++R+A+ W K + +L + F+I + F S + V SVG Q VP + Sbjct: 1 MIKLLREAAHDYPWFLKSIMGLLALAFVIT-MGWWGFGQSSGNVVASVGDQVVPLDEYRR 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++ K + L + +L+ L+ +++GL + Sbjct: 60 AYENTYRFYKDK-----GQNDIKDEFLKQFVLEQLIDNRMWLHVAKEMGLTVSDEDLRKA 114 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I + F K+ F D + L+ + + K + + + + + Sbjct: 115 IMQRTEFQ-KNGSFDPDAYKRLLSANRLTPASFEAMEAKDILTNKARLVIMDAVALTPAE 173 Query: 179 LDQAKRFYF 187 +A+ Sbjct: 174 YTEAQTLAA 182 >gi|322807863|emb|CBZ05438.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065] Length = 336 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 55/395 (13%), Positives = 121/395 (30%), Gaps = 86/395 (21%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64 K+++ ++ + L + + F + + ST+ V +K+ S +Q L Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61 Query: 65 GMISQKIGFVVN-SERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 I + G SE+ + K++L+NL++ L Q +++ + + E + Sbjct: 62 SQIKTQYGEEFEKSEQGKEVIKEQKKQVLENLITEKVLLQKGKELKVIPKDEELNKEADK 121 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 F L G ++ ++ + V+ Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVIN--------------- 166 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISYILFDVH 240 V + +++ + + + P +S+IL Sbjct: 167 -------------------EVTKDVKVEDKDAQKYYNENQSMFTEKPNTMNVSHIL---- 203 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + EA + + L + F ++A Sbjct: 204 ------------------------------------VKTEDEAKKVKKRLDAKEDFAKVA 227 Query: 301 EEQGKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +E + G + D + + +L K+G + +H +GY I V++ Sbjct: 228 KEVSQDPGSKDKGGLLGDINYNDANFDPTFMKAAIAL-KEGTISNSVHTQWGYHIIKVNS 286 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K F VK+DI Q++ K E + + Sbjct: 287 KKEYPVKKFDSVKEDIKKQLKQEKQQEAYTKKIEE 321 >gi|78222152|ref|YP_383899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] gi|78193407|gb|ABB31174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] Length = 330 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 100/345 (28%), Gaps = 82/345 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMIS---QKIGFVVNSERARSVGLDKKILDNLVSG 96 V V + + N+ + L ++ + GF + + KK L +L+ Sbjct: 36 GKVVARVNGVPI----YENALQSHLAALANKGRASGFARDPAKMNDYQ-KKKALYSLIDA 90 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHY 155 L Q + +V + KF + F+ L G ++ Sbjct: 91 ELLRQASNQQQVTDLDAKVSKRL------QEVKGKFPDEEAFLKNLQARGKTLDIFVAEL 144 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + Y + + + Sbjct: 145 RD---------------------------------GIRYDEYLTSKKVIGVPVPDEEIQK 171 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++ ++ PE ++ +IL + + Sbjct: 172 FYRDNPTSFSVPEQIKVRHILIEPDGSTAEA----------------------------- 202 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSL 332 V +K+A E + + K F +A+E + S LG S+ +P FSL Sbjct: 203 VAKAEKKAGEIRNRVVRDKDFAAVAKEVSACSTASSGGDLGYVSRGTMP-AEFDKVAFSL 261 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 K + + + FG+ I V + KP + EV++ I+ ++ Sbjct: 262 -KLNEVSEPVRTKFGFHIMEVLDKKPVTVRPYSEVREFISRYLQR 305 >gi|256545093|ref|ZP_05472459.1| PPIC-type PPIASE domain protein [Anaerococcus vaginalis ATCC 51170] gi|256399134|gb|EEU12745.1| PPIC-type PPIASE domain protein [Anaerococcus vaginalis ATCC 51170] Length = 248 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 4/152 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H+ + IE+S++E++ Y+ NKE P+ ++ +++ A + G F Sbjct: 86 MHKLFESIEVSDEEIKNYYDNNKEVVKKPKSYRASHILVDDEESAKNILNEINDGLSFED 145 Query: 299 LAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + K LG F K + +++ L + G+ + + FGY I + + Sbjct: 146 AANKYSKDNGSKNGDLGEFPKGTMVK-EFEEALDKLGE-GEISKPVKTQFGYHIIKLDHT 203 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + F E+K I + + + K EK E Sbjct: 204 HDEYLPEFDEIKDRIHDTLLMIKRQEKYLEKT 235 >gi|218960354|ref|YP_001740129.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Candidatus Cloacamonas acidaminovorans] gi|167729011|emb|CAO79922.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Candidatus Cloacamonas acidaminovorans] Length = 418 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 67/474 (14%), Positives = 149/474 (31%), Gaps = 93/474 (19%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V VG + S Q Q +G + +LD +++ + Q Sbjct: 26 VAKVGTDIILLSDLQKEMVQM-----QSVG------LLEEDTDPRDVLDEMINQKLIIQK 74 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSR 161 +D+ + + + + ++ S F + L + + E + + Y +L+ Sbjct: 75 AKDLNITVNDEEIK--VMAENYLKKVKAQYPSSSAFAADLKKSKLTESDLLQLYRDILTE 132 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + + + + + A + ++ K Sbjct: 133 QALSDQIL-----------------------------KKEIINKVSVTEAEVINFYNATK 163 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 D+ ++ + +L + + K S E + E Sbjct: 164 DSL--------------------AVKPVSWDLGIIFREIKPNQKSKEAKLAEI------- 196 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 E LK G+ F LA + S LG F + + D+ F+L + G+ Sbjct: 197 --KEIQTRLKNGEDFATLASTESDCPSKEVGGDLGFFKRGQMVKP-FEDAAFAL-QLGEI 252 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY--KRLEEFLA 396 + ++ +GY I + + E++ + A + ++E + + A Sbjct: 253 SDIVESEYGYHIIRLEEKRG------NEIRARHILKALTPTAEDSLRERQLMEEIRNRYA 306 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G S ++R + G+ + + Q+L G+ P+ ++ + Sbjct: 307 KGESFASLAREYSMDQESREDGGSLGEFTERD--LPSLFATQILQTPVGEMTPVLENQGM 364 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 Y++ ++KE P R K EEV ++ K + ++ L E Sbjct: 365 L-----YIFCRLKEY-PPRIYKYEEVKDQAREMVLKRKQIDAFNAWIENLRREA 412 Score = 37.3 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 85/256 (33%), Gaps = 25/256 (9%) Query: 371 IANQMR-ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 I +++ K+ E + K ++ L G ++ E + G +G+ Sbjct: 178 IFREIKPNQKSKEAKLAEIKEIQTRLKNGEDFATLASTESDCPSK-EVGGDLGFFKRGQM 236 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK---LEEVLTDV 486 V E F + L + + + Y ++++E R L+ + Sbjct: 237 VKP---FEDAAFAL-----QLGEISDIVESEYGYHIIRLEEKRGNEIRARHILKALTPTA 288 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFG 545 + + + EE+ ++ +G++F + + + + + + Sbjct: 289 EDSLRERQLMEEIRNR--------YAKGESFASLAREYSMDQESREDGGSLGEFTERDLP 340 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GPVQEKDKFISYLTQMMNKDL 602 +Q+ PV + G+ Y+ ++ + KD+ + + D Sbjct: 341 SLFATQILQTPVGEMTPVLENQGMLYIFCRLKEYPPRIYKYEEVKDQAREMVLKRKQIDA 400 Query: 603 LDSVIAYLKSQYSVTV 618 ++ I L+ + V + Sbjct: 401 FNAWIENLRREAYVQI 416 >gi|312128222|ref|YP_003993096.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor hydrothermalis 108] gi|311778241|gb|ADQ07727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor hydrothermalis 108] Length = 335 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 59/385 (15%), Positives = 126/385 (32%), Gaps = 86/385 (22%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68 + A + L++L + + V + V V +K+ F +++ ++ + Sbjct: 11 SIAAVVLLIILIAV-----TPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQINYYGLD 65 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 + ++ + + +L+ L+ Q + + K Sbjct: 66 KAFLSQKVGDKTYEQQIKENVLNGLIIRQIELQQARKRNITLTAAEKKAIDQQIQ--QYK 123 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 + S F L G E EY D ++ +V Sbjct: 124 SDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 V ++A + ++ +K ++ + S+ILF V++ Sbjct: 161 -----------DEVTKNQKATDAEIESYYNSHKSDFVE---VKASHILFKVND------- 199 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306 + +K+A+E Q +K G+ F +LA++ + Sbjct: 200 ------------------------SKEEATKKKKAEEILQMIKDGQNFEKLAQKYSEDET 235 Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F K + D+ FSL G+ + ++ S+G+ I V++ K +S Sbjct: 236 TKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISSIVKTSYGFHIIKVTDRK---QLSL 290 Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389 EVK +I + + K E + + Sbjct: 291 NEVKDEIKSTIESQKKDEYYQSLLE 315 >gi|258510728|ref|YP_003184162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477454|gb|ACV57773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 314 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 110/399 (27%), Gaps = 113/399 (28%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 L V + +G + G S V VG+ + G Sbjct: 16 GALVVGGVWFG---TYAAHGGGSVVAMVGKTPITRQELAQ-------QSEAYAGSA---- 61 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 +L+ L++ A ++Q + A + + ++ + ++ S Sbjct: 62 ----------MLEELIANALIEQAAAKQHVTATNAEINQQLTAIEM---QNGITSDAQLN 108 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 S LA+ + + ++++ + + + Sbjct: 109 SLLAQNHMTKAQFLNQIRDNILASKLAEA------------------------------- 137 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 ++ + ++++ + PE ++I Sbjct: 138 ------QVHVTDKQIASYYKQNASMFTVPETRKI-------------------------- 165 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318 + + +A++A ++ G F +A+ + S G Sbjct: 166 --------------AIIAVKTKADAEKALTEIQSGTPFASVAKSVSIDAATRSKGGLLGT 211 Query: 319 Y------IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 + D ++A + F+L K G + + GY I I P V+ I Sbjct: 212 FSLDELKAGDPAIASTAFAL-KAGAVSDPVKVQGGYDIVQCQAITPQHVEPLSAVRSQII 270 Query: 373 NQMRITKASE--KVKEDYKRLEEFLALGTSMDEISRREK 409 ++ A K+ + + L S + + K Sbjct: 271 QAIKQQNAESETKLVAQLAKSADIRILDPSYEAVLTAIK 309 >gi|56419191|ref|YP_146509.1| post-translocation molecular chaperone [Geobacillus kaustophilus HTA426] gi|81675918|sp|Q5L289|PRSA_GEOKA RecName: Full=Foldase protein prsA; Flags: Precursor gi|56379033|dbj|BAD74941.1| post-translocation molecular chaperone [Geobacillus kaustophilus HTA426] Length = 281 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 26/200 (13%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKE 243 +++ + + ++ + + E+ K+ Y E + L Sbjct: 56 LIDEKVLSKKYKVTDEEIDREIERIKEAYGTQYDLAVQQNGEKVIREMVKLDLLRTKAAV 115 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I+++ EL+ Y+ K K ++ ++K A E L KG+ F +LA+E Sbjct: 116 EDIKVTEKELKEYYDNYKPKI------RASHILVKDEKTAKEVKAKLDKGEDFSKLAKEY 169 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG F + ++ + L K G+ + + +GY I V++ + Sbjct: 170 SQDPGSASNGGDLGWFGPGKMVK-EFEEAAYKL-KVGEVSDPVKTDYGYHIIKVTDKE-- 225 Query: 360 FTVSFQEVKKDIANQMRITK 379 SF E+K +IA +++ K Sbjct: 226 KKKSFNEMKDEIAFEVKRNK 245 >gi|227485003|ref|ZP_03915319.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus ATCC 51172] gi|227237000|gb|EEI87015.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus ATCC 51172] Length = 343 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 19/258 (7%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 SR ++ V M L+ D K E ++ V+ LN+ + + +L + Sbjct: 73 SRQNLKNSIVQMMVQDKLIADDMKANKIEISDKEVNDAFLNSVKQFGGQEQFDKMLDD-Y 131 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + ++ K + Y EK+ ++ +E++ YE NK+K+ R ++ Sbjct: 132 NMDVEKFKETVKKDLMYKKHREW-FEKEHPVTEEEIKQYYEDNKDKFA---KRDASHILV 187 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLA 333 ++K A E L KG F LA+E K + LG+FS+ + D+ FSL Sbjct: 188 ADEKTAKEVKDKLDKGADFAALAKEYSKDTANAANGGELGTFSRGQMVK-EFEDAAFSL- 245 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K+G+ + + FGY I V+ I S ++ K+ I + K S+ +KE K+ Sbjct: 246 KEGEISGPVKTQFGYHIIKVNKI----ADSIEDNKEAITKALNDKKYSDYIKELNKKAN- 300 Query: 394 FLALGTSMDEISRREKIV 411 + ++ E EK Sbjct: 301 -VVTEATIAEKKEAEKAT 317 >gi|18311465|ref|NP_563399.1| peptidylprolyl isomerase [Clostridium perfringens str. 13] gi|46396974|sp|Q8XHK0|PRSA_CLOPE RecName: Full=Foldase protein prsA; Flags: Precursor gi|18146149|dbj|BAB82189.1| probable protein export protein [Clostridium perfringens str. 13] Length = 342 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 118/393 (30%), Gaps = 87/393 (22%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 + VA + VL + + + + +TV +V +K+ + K + Sbjct: 4 VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMK 63 Query: 69 QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + G + + + + ++ LV+ L + +G++ + ++ F Sbjct: 64 SQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKV--DEQF 121 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 D F L EG E + D + V + Sbjct: 122 ENIKKGM-GDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYII---------------- 164 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 ++ +++++ K + A + ++ Sbjct: 165 ------------------KDVKVTDEDAQKYYDENKQQFVAKDSGVLT------------ 194 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA---- 300 + L+F N++EA +A+ ++ GK F L Sbjct: 195 ---------------------------KHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYQ 227 Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-K 357 + + K +LG E V K+G+ + I FGY I + Sbjct: 228 NNKSENKKPIAENLGVVPAENSGLVQEFVDGLKPLKEGEISKPIKTQFGYHIIQAGATYE 287 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + F EVK I ++ K SEK K D + Sbjct: 288 KGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQ 320 >gi|77917708|ref|YP_355523.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus DSM 2380] gi|77543791|gb|ABA87353.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus DSM 2380] Length = 307 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 104/270 (38%), Gaps = 34/270 (12%) Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 +++ + ++L R V+ +R Y R +D+ +L Sbjct: 42 EQFQHDFAQILPRDRVL---------PKDEEQALRRSYLAQR-IDHELLLAEATRRKLSV 91 Query: 209 SNAVLTQWFEKYKDNY-------------------RAPEYKRISYILFDVHEKEKKIEIS 249 + A L Q + D Y + +++ K++I+ Sbjct: 92 TPAELQQAIASHLDRYPSGDFERMLADQGLAVEDWQRLLQEQLLVEKVLALMVRDKVDIA 151 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308 ++E+ A + +++ + PE Q+ P++ + +A + L++G F ++A S Sbjct: 152 DEEINAYFAAHRQSFARPEQVKARQITVPDEAQGRQALEMLRQGTPFAEVARRCSISPDA 211 Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 +G+F++ +P+ + ++F L G + + +GY I V P+ Sbjct: 212 DQGGDMGTFARGEMPE-AFDKAVFGLP-AGRISDLTESDYGYHIFLVEQHLPARPPDLDT 269 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLA 396 V+ +I Q+R + + ++ + L + A Sbjct: 270 VRGEIVAQLRKQQEEQLYQDWLQSLRQEAA 299 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 9/122 (7%) Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 + E L GT E++RR I D G +G+ A VFG Sbjct: 187 QALEMLRQGTPFAEVARRCSISP-DADQGGDMGTFARGEMPEAFD------KAVFGLPAG 239 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 D T + D Y +++ +PAR L+ V ++ + + + L E Sbjct: 240 RISDLTES--DYGYHIFLVEQHLPARPPDLDTVRGEIVAQLRKQQEEQLYQDWLQSLRQE 297 Query: 510 YS 511 + Sbjct: 298 AA 299 Score = 37.3 bits (85), Expect = 8.6, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 5/121 (4%) Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 LE ++G F ++ + S + VF P + Sbjct: 188 ALEMLRQGTPFAEVARRCSISPDADQGGDMGTFARGEMPEAFDKAVFGLPAGRISDLTES 247 Query: 567 NGLSYVVFKVTNSKVGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + Y +F V + D + ++ L + + L + L+ + ++ + L Sbjct: 248 D-YGYHIFLVEQHLPARPPDLDTVRGEIVAQLRKQQEEQLYQDWLQSLRQEAAIEIDWTL 306 Query: 623 I 623 + Sbjct: 307 M 307 >gi|319653565|ref|ZP_08007664.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2] gi|317394764|gb|EFV75503.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2] Length = 292 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 44/380 (11%), Positives = 112/380 (29%), Gaps = 109/380 (28%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K+ +L I + F++ +V +++ + + G Sbjct: 5 KVIYWILGSVVTIGAAAAIFFTIKEDDAAATVNGEEISRDEL-------HERLVAQYG-- 55 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 +++LD+L++ +DQ + ++ + E ++ Sbjct: 56 ------------QELLDSLITEKVIDQEAKKENVKVTQEEIDEE---KAVYAESYGGED- 99 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 L G++ ++ + L+ ++ Sbjct: 100 -ALKQTLESSGLSMADFEEDIESYLATKKLLEP--------------------------- 131 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + S + +F++ K+++ E S Sbjct: 132 ----------RIEISEEAMKTYFDENKESFAQEEQVSAS--------------------- 160 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 ++ +++ A E L G F +LA E S Sbjct: 161 -------------------HILVEDEETAKEVIGKLNDGGDFAKLAAEYSTDESNKDAGG 201 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F K + + + FSL + G + + +GY + V+ + + ++++VK++ Sbjct: 202 DLGFFGKGDMVE-EFEEVAFSL-EPGKISDPVKTEYGYHVIKVAEKQEAKEAAYEDVKEE 259 Query: 371 IANQMRITKASEKVKEDYKR 390 + N + T+ + + Sbjct: 260 VKNTLFETEMQTEYTAWLEE 279 >gi|302325773|gb|ADL24974.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 671 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 86/664 (12%), Positives = 199/664 (29%), Gaps = 61/664 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML I + ++ WV IF + + L D + S + V K+ ++ F + Sbjct: 29 MLTWINEKAK-WVIVIFAAGIAIGLLAM---DRVPDQGRSYPIGIVNDTKISYTDFDSRV 84 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K + +Q ++ E+ L ++ + V A + E L A + E Sbjct: 85 KMIVQ--NQYQNQHLDDEQ--YSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNE-- 138 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F + V ++ ++ R+ + Sbjct: 139 ----FKRNSDAV-RARLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNK 193 Query: 181 QAKRFYFEN-RSVDY-IVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAP---EYKRIS 233 + E + + +L+ L + + A E + Sbjct: 194 ADYDAWIETPAAYRWSAMLSLEDEMKNNSIPARQLQTLVGASVHPTSLEAKWSVERRMTD 253 Query: 234 YILF-----DVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEA--DE 285 Y L + + + + + + +F + + + P + A D Sbjct: 254 YELQVAVAPSSAFVVDSNSVDSVMVAGYFNAHIDSFFVQKDAAQFQYVSIPVEATAGDDA 313 Query: 286 AFQSLK-----------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-----VSLADSI 329 + + F +A + G E ++ Sbjct: 314 SIREYAMTLYYQLTDSSSTTTFEDMARVSSEDPGSAEKGGILSEDFVGRGSYVKPFEEAA 373 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F+L G + + FGY I + ++VK + + + AS + + Sbjct: 374 FALDS-GKISEPVRSQFGYHIIKSYGNVKNAKGEVEKVK--VGHILLTVTASSNTIDSLE 430 Query: 390 R-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 + L + ++ + +++ ++ +D + A Y + L + ++ Sbjct: 431 KILTNIKKDVDAGSDLLTEAQARGLEVKTSEWVSRDGN---IGAFGYLKGLASFAWPNEN 487 Query: 449 PLSKDHTVA--LPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 ++ ++ L + ++ + + S A +R L D+K+ K + + + Sbjct: 488 LPKEESEISGVLRNNKWVVIAKKIGSFTAGERSLPLYYNDIKETLLKQKAGKAAEAYLSS 547 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565 + + KE K L T N +G I++V P+ Sbjct: 548 VAAQ-VKEWNPADTAAKIEKVELETKNASVDGFVPGFGYGNAQIARVVGKAKAGEWTAPV 606 Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVTVHDN 621 V+ KV + K V+E ++ I + + + L++ V + + Sbjct: 607 VAENGAVMVKVVSKKTPKVEEVEEAIKQDVDNSYRFGVMTAFNDYVTSLEASTPVKSNLD 666 Query: 622 LIQR 625 L R Sbjct: 667 LFYR 670 >gi|225874673|ref|YP_002756132.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium capsulatum ATCC 51196] gi|225793602|gb|ACO33692.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium capsulatum ATCC 51196] Length = 588 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 114/361 (31%), Gaps = 81/361 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSG 96 V V Q + S + + Q + + LD++ +L NL+ Sbjct: 62 EQIVARVDDQVIDTSDYERA--------EQDLKQQAQQQNMSQAELDREKKDLLRNLIDQ 113 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L + +G+ + + R +++ S + +G++ +++ Sbjct: 114 QLLLAKGKQLGITGED----QLVERLDAIRKQNHLDSMTALQQAVESQGLSWQDFKQQIR 169 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + V+ V S + ++ Sbjct: 170 NNIITQTVIRQ---------------------------------KVAPTIRISPDEIQKY 196 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++++K + PE R+S IL + +++ Sbjct: 197 YDQHKKEFDRPEEVRLSEILIPTPNPDDAAQVAEA------------------------- 231 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333 +K+AD LK G F +LA+ + LG F K + L ++ F L Sbjct: 232 ---KKKADGIEAQLKAGGDFAKLAKSDSTGPTAPQGGDLGDFQKGQLA-PELENATFPL- 286 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 KKG FT I G++I V++ + + +V+ I N + K ++ +L Sbjct: 287 KKGQFTEPIQTKQGWIILEVTHHQDAGLAPMNQVETQIENAVGYNKMQPALRAYLTKLRN 346 Query: 394 F 394 Sbjct: 347 E 347 >gi|138894238|ref|YP_001124691.1| protein export protein prsA [Geobacillus thermodenitrificans NG80-2] gi|196251144|ref|ZP_03149822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. G11MC16] gi|226712005|sp|A4IKU2|PRSA_GEOTN RecName: Full=Foldase protein prsA; Flags: Precursor gi|134265751|gb|ABO65946.1| Protein export protein prsA [Geobacillus thermodenitrificans NG80-2] gi|196209342|gb|EDY04123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. G11MC16] Length = 278 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 82/200 (41%), Gaps = 26/200 (13%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---------EYK---RISYILFDVHEKE 243 +++ + + ++ + + E+ K+ Y E I L Sbjct: 56 LIDEKVLSKKYKVTDEEIDREIERIKEAYGTQYDLAVQQNGEKVIREMIKLDLLRAKAAI 115 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + I++++ EL+ Y+ K K ++ ++K A E L KG+ F +LA+E Sbjct: 116 EDIKVTDKELKEYYDNYKPK------VRASHILVEDEKTAKEVKAKLDKGEDFAKLAKEY 169 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG F + ++ + L K G+ + I +GY I V++ + Sbjct: 170 SQDPGSASNGGDLGWFGAGKMVK-EFEEAAYKL-KVGEVSDPIKTDYGYHIIKVTDKE-- 225 Query: 360 FTVSFQEVKKDIANQMRITK 379 +F ++K++I +++ +K Sbjct: 226 KKKTFDKMKEEITFEVKRSK 245 >gi|331270660|ref|YP_004397152.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum BKT015925] gi|329127210|gb|AEB77155.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum BKT015925] Length = 247 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + V++ ++++++ E++ Y NK+ + E + + ++ N++ A+E + +K Sbjct: 79 ALTQMSVNKVLSEVQVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANEVAEKIKN 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F + A+E S +LG F K + ++ F+L + G + + FGY Sbjct: 139 GMSFDEAAKEYSTCPSKAQGGNLGKFGKGQMV-PEFEEAAFNL-EIGKLSEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + + SF EVK I + + + K + L+ Sbjct: 197 LIEVEDKNKATEKSFDEVKDMIKANLIQQRQTAKYTTFVEELKNK 241 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 38/262 (14%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 EI+ +++ ++ P+ R F ++ + + L + F +E Sbjct: 13 EITEKDIEVAIKRF------PQERQA---YFAGEQGKKQLLEQLIAFELFHAYGKENEFD 63 Query: 307 LSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 ++E+I + + D++ ++ + V V + + +F Sbjct: 64 K--------TQEFIDGIEIMKKDALTQMSVNKVLSEVQVTDK-----EVEDYYTANKKNF 110 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 + + +E + E + G S DE ++ P G Sbjct: 111 V-----VGETVSAKHILVDNEELANEVAEKIKNGMSFDEAAKEYS----TCPSKAQGGNL 161 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 K + +P E+ F + + V G Y +++++ A ++ +EV Sbjct: 162 GKFGKGQMVPEFEEAAFNL----EIGKLSEPVKTQFG-YHLIEVEDKNKATEKSFDEVKD 216 Query: 485 DVKKDWKTVKTAEEVSSKANQL 506 +K + + + ++ +L Sbjct: 217 MIKANLIQQRQTAKYTTFVEEL 238 >gi|212696251|ref|ZP_03304379.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM 7454] gi|212676880|gb|EEB36487.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM 7454] Length = 248 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H K I++S+DEL+ Y+ NKE P+ ++ ++ EA++ + +K G +F + Sbjct: 86 MHLLFKDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEEIKAGLEFEK 145 Query: 299 LAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ LG F + + +++ L + G+ + + FGY I + + Sbjct: 146 AADKYSTDKASKGGDLGEFPQGAMVK-EFEEALDKLDE-GEISNPVKSQFGYHIIKLDHT 203 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + F E+K I + + + K EK E +++E + Sbjct: 204 HNAHLPEFNEIKDRIHDTLLMIKRQEKYLEKTNKIKEKV 242 >gi|260682966|ref|YP_003214251.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196] gi|260686564|ref|YP_003217697.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|296451354|ref|ZP_06893092.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296880296|ref|ZP_06904261.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] gi|260209129|emb|CBA62320.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196] gi|260212580|emb|CBE03572.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|296259770|gb|EFH06627.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296428739|gb|EFH14621.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] Length = 261 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 F +++ + ++ DE +E NK + PE T + ++ + ++A E +K + Sbjct: 93 FAINKVLSSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEIS 152 Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A + S LG+F + + +++FS+AK G+ + + FGY I Sbjct: 153 FEDAALKHSSCPSKDMGGDLGTFGRGQMV-PEFEEAVFSMAK-GEVSEPVKTQFGYHIIK 210 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + +++ S +F EVK ++ + K +E L Sbjct: 211 LEDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGN 255 >gi|218961252|ref|YP_001741027.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167729909|emb|CAO80821.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 565 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 83/619 (13%), Positives = 197/619 (31%), Gaps = 79/619 (12%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 I + +L + FL+ + + SS SV ++ F NS++ + + G Sbjct: 8 IVITLLGLFFLV------SCATNSSSVAGSVNGTEISLEDFFNSYRGHYAIFGYQTGRTP 61 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--------IARSPLFHG 127 E L + ++ L + + + A V I +SP F Sbjct: 62 TKEEKEK--LHNETWRDITKAIILQDYYKKYNISASVAEVLDTLSNSIPEHIIKSPRFQ- 118 Query: 128 KDNKFSHDVFVSRLAREGIN--EKEYID----HYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 + KF +++ L + + + ++ + + + S+ + Q Sbjct: 119 VNGKFDKKLYLQSL----MTDQPENLAALRKHYQENVIPILKLQKVLIEEEMLSSKIRKQ 174 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 ++ N ++ + + S+A ++ W++ + +R ++ R+ Y V Sbjct: 175 VEQIIASNADLELYIFAPSQLE--ISLSDAEISAWYQTNLEQFRLWQFYRLGYCSIPV-- 230 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 E+S+ KN ++ E+ + + +L+ Sbjct: 231 IPDSTELSDA-------KNTAEFIRNELVRGIDI--------KDIIANLEN--------- 266 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + +S I G E +P + +++ L + G + + G+++ I+ + T Sbjct: 267 -KNSLVSFIDNGYQKTEELPW-EIQNALLGL-ENGLCSEPLPYEKGWIMYQ--KIQSTKT 321 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ I Q AS E + LAL + + + I P Sbjct: 322 LTLYN---TIFVQALPKTASLLAPETQAQQIMKLALNIGLQQAADEFGISYTLTPA---- 374 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 V A K +L+ + + + + +++ ++ E LEE Sbjct: 375 -MSPDSLIVPANDIKGKLMKYLEIANSGDIIEPLYSAELSAWLIFEVVEKQSKEYLPLEE 433 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 V + + + ++ + ++ + Q+ Sbjct: 434 VKPQIVQILSKERRKDQNKQIVERWLINQN----------IPANYQWEKLEQVTIDSLWQ 483 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNK 600 Q +E I G +V KVT + + ++ + TQ + + Sbjct: 484 GKPLTTIYYQAVKAYLEKANPPQITEGEVIIVPKVTAFRPQKTKISPERIKTIYTQNLPE 543 Query: 601 DLLDSVIAYLKSQYSVTVH 619 D +S + + V ++ Sbjct: 544 DWFNSWMEEQVKKAKVVIN 562 >gi|325479565|gb|EGC82661.1| putative peptidylprolyl isomerase PrsA2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 354 Score = 118 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 58/396 (14%), Positives = 128/396 (32%), Gaps = 106/396 (26%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 TV V +K+ +K EL + + A L I+ +V Sbjct: 48 DDKTVAIVDGEKISKDD----YKSELSFYASML--------ASQQQLKNSIVTMMVQDKL 95 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + I+ ++ D V + + + + F L + ++ + K Sbjct: 96 IANDIKKNDIKVDDKEVEDALMQ--SVQNFGGQ---ENFDKTLDDYNMELDKFKETLKKD 150 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L Y ++R ++ + ++FE Sbjct: 151 LM-------------------------YKKHRE---------WFDENNKVTDDEIKKYFE 176 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 KD + ++ Sbjct: 177 DNKDEF-------------------------------------------AKVDASHILVE 193 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAK 334 +++ A++ L G+ F LA+E K + +LG+F+K + D+ FS+ K Sbjct: 194 DEQTANDIKARLDNGEDFASLAKEYSKDTASAQNGGALGAFAKGQMVK-EFEDAAFSM-K 251 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +G+ + + FGY I V++IK SF++ K++I +++ K ++ +K+ ++ E Sbjct: 252 EGEISAPVKSQFGYHIIKVNSIKD----SFEDSKEEITKKIKDQKYADYIKKLHE--ESN 305 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + + DE + + S + + ++ Sbjct: 306 VVTDQTTDEATDEDNKESETEIKTEDNKAESNDQDA 341 >gi|153956391|ref|YP_001397156.1| foldase-related protein [Clostridium kluyveri DSM 555] gi|146349249|gb|EDK35785.1| Foldase-related protein [Clostridium kluyveri DSM 555] Length = 247 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 5/160 (3%) Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + + I++++ E++ Y NK Y PE T ++ + ++A + +KKG F Sbjct: 84 TISKIMENIKVTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNEIKKGLSFE 143 Query: 298 QLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A++ S +LG+F++ + + F L + G + + FGY + V Sbjct: 144 DAAKKYSSCPSKAQGGNLGNFTRGQMV-PEFETAAFQL-EIGILSKPVKTQFGYHLIKVE 201 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + F +VK I N + K + + + L++ Sbjct: 202 KKEKDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDK 241 >gi|187933209|ref|YP_001887564.1| foldase protein PrsA [Clostridium botulinum B str. Eklund 17B] gi|187721362|gb|ACD22583.1| foldase protein PrsA [Clostridium botulinum B str. Eklund 17B] Length = 247 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 71/165 (43%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + +++ + +++++++ Y+ N + +P + + ++ ++EA + + Sbjct: 79 ALTQLAINKVLADVTVTDEDVKKYYDDNSSMFINPPTVSAKHILVKTEEEATSIKEEIAN 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F + A++ S SLG+F K + F ++ G + + FGY Sbjct: 139 GLAFEEAAKKYSTCPSKEQGGSLGNFGKGSMV-PEFEKVAFE-SEVGKVSEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + S TV F +VK + Q+ + K E K+L + Sbjct: 197 LILVEDKTESTTVPFDQVKDAVLKQLINERQQNKYLEMIKQLSDK 241 Score = 38.0 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 9/124 (7%) Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K +E+ ++E +A G + +E +++ P + G + + +P E++ F Sbjct: 124 KTEEEATSIKEEIANGLAFEEAAKKYS----TCPSKEQGGSLGNFGKGSMVPEFEKVAF- 178 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + + V G Y + +++ + ++V V K + + Sbjct: 179 ---ESEVGKVSEPVKTQFG-YHLILVEDKTESTTVPFDQVKDAVLKQLINERQQNKYLEM 234 Query: 503 ANQL 506 QL Sbjct: 235 IKQL 238 >gi|158319280|ref|YP_001511787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus oremlandii OhILAs] gi|158139479|gb|ABW17791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus oremlandii OhILAs] Length = 249 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H K +S +++ Y ++ + + PE ++ ++++A+E + + +G F + Sbjct: 86 MHNVLKNATVSEEDMLNYYNEHTDSFKEPESMQASHILVESEEKANEVLKEINEGLSFEE 145 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ S LG F++ + ++ F + + G + + FGY I N Sbjct: 146 AAKKHSTCPSNAQGGDLGHFTRGRMV-PEFENAAFDM-EVGAVSAPVKTQFGYHIIKAVN 203 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F EVK + Q+ + K E L+ Sbjct: 204 KVEESVKPFAEVKMQLNQQLSMMKQQELYLNKVDELK 240 Score = 41.1 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 E KAN+ VL+ EG +F + K + + + F V Sbjct: 125 ESEEKANE-VLKEINEGLSFEEAAKKHSTCPSNAQGGDLGHFTRGRMVPEFENAAFDMEV 183 Query: 558 EMVKCFPIENGLSY----VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613 V P++ Y V KV S + K + L+ M ++L + + LK + Sbjct: 184 GAV-SAPVKTQFGYHIIKAVNKVEESVKPFAEVKMQLNQQLSMMKQQELYLNKVDELKKE 242 Query: 614 YSVTVHD 620 Y V +++ Sbjct: 243 YEVQINE 249 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 + + + +VG +++ F LG ++ + NSE + K+++ LV+ Sbjct: 1 MDNNKVLATVGGREITQQDFDL----LLGSLNPQQAMQFNSEAGK-----KQLVQELVNQ 51 Query: 97 ATLDQFIEDIGLEADHGRVWGE 118 GL+ D + Sbjct: 52 ELFLLEALKNGLDKDEVFIQEA 73 >gi|92113046|ref|YP_572974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter salexigens DSM 3043] gi|122070642|sp|Q1QZ33|SURA_CHRSD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|91796136|gb|ABE58275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter salexigens DSM 3043] Length = 435 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 53/415 (12%), Positives = 128/415 (30%), Gaps = 63/415 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S + Q ++ + N L +++LD ++ Sbjct: 30 DRIVAVVNKDAIMQSRLEDRVTQVRRQMASR-----NVPAPNEADLRRQVLDRMILEQIQ 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E L D ++ + +DN S D F L +G++ + + + Sbjct: 85 LQMAERANLSIDDTQLNATVRGI----AEDNGMSMDEFADALEEDGMSLASMREQVRREM 140 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAV 212 V + ++ +++ E Y + + P + + A Sbjct: 141 LLRQVQQSQVASRVNVTDREVERYLDQQGETADTAYHLAHILVSVPESPTPEQVEQAQAK 200 Query: 213 LTQWFEK--YKDNYRAPEYKR-------------------ISYILFDVHEKEKKIEISND 251 + + + N+ + + DV E+S Sbjct: 201 VRDLYRQLQNGANFAQLATAESDGQQALSGGDLGWRRGDQLPSLFADVVPTLSNGEVSEP 260 Query: 252 ----------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292 +L + E+ V ++ + A + Q + Sbjct: 261 IRSPSGFHLVKLIDTRGQQGEQKRVVTENRVRHILIGTNPNRNDQQAEALARDIRQRIAN 320 Query: 293 GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F LA+E G +L LG + + D++ +L G+ + + FGY Sbjct: 321 GESFAALAQEYSDDDGSALDGGELGWTRPGQMV-PAFEDAVKAL-DVGELSQPVRSRFGY 378 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + + + + V+ ++ I + K S++++ + + + +++ Sbjct: 379 HVIELEDRR-RQDVTRDAQREQIRQTLFQRKVSDEMEAWTQEIRSGAYIDNRLED 432 >gi|224369907|ref|YP_002604071.1| PpiD2 [Desulfobacterium autotrophicum HRM2] gi|223692624|gb|ACN15907.1| PpiD2 [Desulfobacterium autotrophicum HRM2] Length = 314 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 116/383 (30%), Gaps = 83/383 (21%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI + F ++ L +++ V V + + + + + I G+ Sbjct: 5 KINFGLAIGVFTLFTLCGNVYAEIVDRIVAIVNEDIITLTELNTALRPYIDKI-DSAGYT 63 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + + L +L +V DQ ++ + + I R + Sbjct: 64 GDKKEKILFKLRTDMLSRMVDRKLTDQEVKKFNITVTDKEIDAAIERLKQAQL----MTQ 119 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + L ++G+ +Y + + R ++ Sbjct: 120 EDLETALEKDGMTFADYREKMRLEIMRPKLIN---------------------------- 151 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 V + ++ + ++ +++ Y R+ Sbjct: 152 -----YSVKSKVIVTDKDIAAYYAEHQAEYAGVRKFRL---------------------- 184 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DIS 311 ++ ++ A+ + L+ G+ F LA E K+ + + Sbjct: 185 ------------------SNILVSDESTAETVWNRLETGEDFKALAGELSKAPNAAEGGA 226 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LGSF+ + + D + G +T VI G+ I + I S + EVK +I Sbjct: 227 LGSFALDTLSDQL--KVAIGKLEPGQYTNVIPTDQGFQIFFLDEIVESKGNALDEVKDEI 284 Query: 372 ANQMRITKASEKVKEDYKRLEEF 394 ++ + +K + L E Sbjct: 285 QKKLYDSIVEKKFNSWLESLREK 307 >gi|312876097|ref|ZP_07736085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor lactoaceticus 6A] gi|311797083|gb|EFR13424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor lactoaceticus 6A] Length = 335 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 60/385 (15%), Positives = 125/385 (32%), Gaps = 86/385 (22%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68 + A + L++L + + V + V V +K+ F ++K ++ + Sbjct: 11 SIAAVVLLIILIAV-----TPEIVRYVDENRAVAIVNGEKITKKEFAINYKSQINYYGLD 65 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 + ++ + + +LD L+ Q + + K Sbjct: 66 KAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIE--QYK 123 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 + S F L G E EY D ++ +V Sbjct: 124 SDSQSGTEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 V S+A + ++ +K ++ + S+ILF V++ Sbjct: 161 -----------DEVTKNQKASDAEIESYYNSHKSDFVE---VKASHILFKVND------- 199 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306 + +K+A+E Q +K G+ F +LA++ + Sbjct: 200 ------------------------SKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSEDET 235 Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F K + D+ FSL G+ + ++ S+G+ I V++ K + Sbjct: 236 TKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISSIVKTSYGFHIIKVTDRK---QLLL 290 Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389 +VK +I + + K E + + Sbjct: 291 SDVKDEIKSTIESQKKDEYYQSLLE 315 >gi|312623037|ref|YP_004024650.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor kronotskyensis 2002] gi|312203504|gb|ADQ46831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor kronotskyensis 2002] Length = 335 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 60/385 (15%), Positives = 127/385 (32%), Gaps = 86/385 (22%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68 + A + L++L + + V + V V +K+ F +++ ++ + Sbjct: 11 SIAAVVLLIILIAV-----TPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQINYYGLD 65 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 + ++ + + +LD L+ Q + + + K Sbjct: 66 KTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQAKRKNIALTSAEKKAIDQQIE--QYK 123 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 + S F L G E EY D ++ +V Sbjct: 124 SDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 + ++A + ++ +K ++ + S+ILF V++ Sbjct: 161 -----------DEITKNQKATDAEIENYYSSHKSDFVE---VKASHILFKVND------- 199 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306 + +K+A+E Q +K G+ F +LA++ + Sbjct: 200 ------------------------SKEEATKKKKAEEVLQMIKDGQNFEKLAQKYSEDET 235 Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F K + D+ FSL G+ + ++ S+GY I V++ K +S Sbjct: 236 TKQKGGDLGYFRKGQMVK-EFEDAAFSL-NIGEISNIVKTSYGYHIIKVTDKK---QLSL 290 Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389 EVK +I + + K E + + Sbjct: 291 NEVKDEIKSTIESQKKDEYYQSLLE 315 >gi|149924976|ref|ZP_01913302.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1] gi|149814159|gb|EDM73776.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1] Length = 630 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 76/441 (17%), Positives = 152/441 (34%), Gaps = 65/441 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 M R V + L VL + F + +GL SV S V Q V F + Sbjct: 1 MFGSERGKGGDIVVWLILGVLALAFGLTFGLPSDQLSVGESGY-ARVFGQNVTKEDF--A 57 Query: 60 WKQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++Q + +G V E+ R+ G+ +++L+ +V L E++GL R Sbjct: 58 YQQ------RALGTVFPLPEGEQGRTFGVREEVLEAIVERLVLASTGEELGL-MTETRDA 110 Query: 117 GEIARSPLFHGKD----------NKFSHDVFVS-RLAREGI---NEKEYIDHYTKMLSRT 162 E+ R + D KF ++ F + L G +E Y++ + L Sbjct: 111 EEMTRDGFYIILDLDRGFPWAGEAKFDYEWFKNDFLR--GYLVVSEPRYLEIQRQELLAR 168 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + + + S+ Y+ + DP+ A + W ++ D Sbjct: 169 QTRDLIAASVVVPEAEVWAEFEKRNNQLSLRYVRFPPNDYAELVDPTAAEVDGWMMEHPD 228 Query: 223 NYRAP-EYKRISYILFDVHEKEKKIEISN---------DELQAEYEKNKEKYFSPEIRTV 272 E + ++ + IE++ +E+QA +E N + Sbjct: 229 ELTEMYEREAARFLKLPAEVDLRIIEVAKPMQPPADAGEEVQAMWEANVAAAKAKAELAR 288 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-------FSKEYIPDVSL 325 ++V G++F +A E +++ +G D ++ Sbjct: 289 TRIV--------------DNGERFSTVARELSEAIDTARIGGRYGWTQVTDTGSGLDRAV 334 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKV 384 + +L + G + VI G + V+ + + K+++A +R + E Sbjct: 335 DKAAQAL-EDGQVSEVIEGESALFVVMVAGHREGDVPE-DQAKRELAEDAVRSARGRELA 392 Query: 385 KEDYKR-LEEFLALGTSMDEI 404 K+ L G +D++ Sbjct: 393 KQAADEALLALREGGKDLDDL 413 Score = 37.7 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 6/127 (4%) Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 + G ++R + G + + + + Sbjct: 292 VDNGERFSTVARELSEAIDTARIGGRYGWTQVTDTGSGLDRAVDKAAQAL---EDGQVSE 348 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD-WKTVKTAEEVSSKANQLVLEYSKE 513 + + + V + D ++ ++ +D ++ + E A++ +L + Sbjct: 349 VIE-GESALFVVMVAGHR-EGDVPEDQAKRELAEDAVRSARGRELAKQAADEALLALREG 406 Query: 514 GKNFRDI 520 GK+ D+ Sbjct: 407 GKDLDDL 413 >gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630] gi|254974902|ref|ZP_05271374.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-66c26] gi|255092291|ref|ZP_05321769.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP 107932] gi|255100375|ref|ZP_05329352.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-63q42] gi|255306317|ref|ZP_05350488.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC 43255] gi|255314029|ref|ZP_05355612.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-76w55] gi|255516709|ref|ZP_05384385.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-97b34] gi|255649808|ref|ZP_05396710.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-37x79] gi|255655366|ref|ZP_05400775.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-23m63] gi|306519909|ref|ZP_07406256.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-32g58] gi|115250393|emb|CAJ68215.1| putative peptidyl-prolyl isomerase [Clostridium difficile] Length = 251 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 F +++ + ++ DE +E NK + PE T + ++ + ++A E +K + Sbjct: 83 FAINKVLSSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEIS 142 Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A + S LG+F + + +++FS+AK G+ + + FGY I Sbjct: 143 FEDAALKHSSCPSKDMGGDLGTFGRGQMV-PEFEEAVFSMAK-GEVSEPVKTQFGYHIIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + +++ S +F EVK ++ + K +E L Sbjct: 201 LEDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGN 245 >gi|312134560|ref|YP_004001898.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor owensensis OL] gi|311774611|gb|ADQ04098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor owensensis OL] Length = 335 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 83/378 (21%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--ISQKIGFVV 75 +V+L + + + + + + V V +K+ F ++K ++ + + Sbjct: 15 IVLLIIVIAVT--PEIVKYMDENRAVAIVNGEKITKKEFAINYKSQINYYGLDKAFLSQK 72 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 ++ + + ILD+L+ Q + + K + S Sbjct: 73 VGDKTYEQQIKEDILDSLILRQIELQQARKRNITLTSAEKKAIDQQIE--QYKSDSQSGA 130 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F L G E ++ D ++ ++ Sbjct: 131 EFKQYLQTIGATENDFKDQV----IKSQIISKLY-------------------------- 160 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 V S+A + ++ +K ++ + S+ILF V++ Sbjct: 161 ----DEVTKSQKASDAEIESYYNSHKSDFVE---VKASHILFKVND-------------- 199 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDIS 311 + +K+A+E Q +K G+ F +LA++ + Sbjct: 200 -----------------SKEETAKKKKAEEVLQMIKSGQSFEKLAQKYSEDETTKQKGGD 242 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG F K + D+ FSL G+ + V+ S+G+ I V++ K +S +VK +I Sbjct: 243 LGYFRKGQMVK-EFEDAAFSL-NIGEVSNVVKTSYGFHIIKVADKK---QLSLNDVKDEI 297 Query: 372 ANQMRITKASEKVKEDYK 389 + + K E K + Sbjct: 298 KSTVESQKKDEYYKSLIE 315 >gi|39997172|ref|NP_953123.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39984062|gb|AAR35450.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] gi|298506185|gb|ADI84908.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter sulfurreducens KN400] Length = 321 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 97/287 (33%), Gaps = 33/287 (11%) Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 +F + + F L+R ++ D K + R ++ + + Sbjct: 44 IFRDELDHFV----EFALSRRRGAGRKVTDEQKKRVERQELDKLIAMELLAQAGEKLNPA 99 Query: 184 RFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + ++ + + ++ PS L + + + Sbjct: 100 DLSKKIQARREAIGSSVSRGGSVVAPSEDRLND-----------TARRDVLVDAYLASRG 148 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSL 290 I++ +L+A YEKNK + PE V ++ +KEA + + Sbjct: 149 IDAIKVPETDLRAYYEKNKSGFKKPETIAVRHILVKVEKEASPETQAEARKKIEGIRDRI 208 Query: 291 KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F LA E + LG + ++P FSL K G+ + ++ G Sbjct: 209 GAGADFAVLASESSDCASAAKGGDLGEIQRGFMP-REFDQVAFSL-KPGETSGIVKTHHG 266 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + I V P +F+E++ I + +KV+E + L+ Sbjct: 267 FHIIRVMERHPETVRTFEEMRDFIEQYLAKDYQRKKVEEIVEELKRA 313 >gi|313206481|ref|YP_004045658.1| ppic-type peptidyl-prolyl cis-trans isomerase [Riemerella anatipestifer DSM 15868] gi|312445797|gb|ADQ82152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella anatipestifer DSM 15868] gi|315023578|gb|EFT36582.1| Peptidyl-prolyl cis-trans isomerase [Riemerella anatipestifer RA-YM] gi|325336073|gb|ADZ12347.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Riemerella anatipestifer RA-GD] Length = 708 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 104/719 (14%), Positives = 205/719 (28%), Gaps = 130/719 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IRK R W+ F+ + + FL+ S + + V +++ + Sbjct: 4 LGEIRK--RPWILIGFIAIALLAFLVNPDSLDKVFGKDPNILGKVNGEEITRDEYNEQLM 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + G + VGL+++ LV + Q E +GLE W ++ Sbjct: 62 LMRNQAESQ-GQPL-------VGLEEQAWQTLVQSKLIKQQFEKMGLELTEDFFWNQLQY 113 Query: 122 SPLFHGKDNKFSHD-VFV--------SRLAREGINEKEY------IDHYTKMLSRTDVVG 166 P+F F F L G +EY + + Sbjct: 114 DPMFSQNPQNFDAKGNFKLTEIKKEIEGLRESG-RVQEYNQWLNIRKTIEYRMMARQLFA 172 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIV------------------------------ 196 G+ + + + +D++ Sbjct: 173 NVTNGITVGKKEAELIMKNRDQVADIDFVKIDYNTFAQKNPVKVTSEDLANFIKKHPVAF 232 Query: 197 ------------LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + + L + + +N+ + ++ + K Sbjct: 233 KAEASRNLGVVLFPAKPSAIDDSLTLKELRKLYNGEGENFLNSPSDSM-FVEINSEAPVK 291 Query: 245 KIEISNDELQAE----------------YEKNKEKYFSP-----EIRTVEQLVFP----- 278 +S E+ E Y+ + Y + E + ++ Sbjct: 292 YGFVSEQEVPQEAQAFVKTATVGQVYGPYKSGGKYYVTKLAGKSEATLPKHILIAFAGTD 351 Query: 279 ----------NQKEADEAFQSLK--------KGKKFIQLAEEQGKSLSDISLGSF-SKEY 319 ++EA + S+ K +F+ + ++G + L + Sbjct: 352 VAKQDPSIKRTKEEAKKLADSIATQVKADPAKFTQFVSFSADKGSAQQGGMLQWVLPGKS 411 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 AD + S KG V+ FGY + N P + KDI + Sbjct: 412 GFVKPFADWVES-NPKGAV-GVVETQFGYHVMVNENKMP--VYKIANLAKDIRA---SKE 464 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 KV + + G S +E + K + G+ + E++ Sbjct: 465 TQNKVYAQANTFIQQI-QGKSFNEFANLAKKSNYQFANPKMVGRFQGQIQGLGTDKDEEI 523 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 L F KD + +G Y+ + A E V ++ K A+++ Sbjct: 524 LAWAFNKDTDKGDTNIFTTSNGDYVVAYLNGKQEAGLADPESVREQIEPIVKNQLLAKKI 583 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVE 558 K N + + + +I K GA + + QIN + ++ F Sbjct: 584 IEKLN------ASKSLSLDEIAKQFGA-VKESGQINMLTPSLGMAMEPKVAGAAFGVAPN 636 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V N YVV K S+ + +F+ L Q + S++ L+ + Sbjct: 637 KVSKPIEGNTGVYVVVKKKVSENKQPGDAKQFVQMLEQQNAQMFTQSLLKSLQDNADIK 695 >gi|262199092|ref|YP_003270301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum DSM 14365] gi|262082439|gb|ACY18408.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum DSM 14365] Length = 650 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 61/404 (15%), Positives = 131/404 (32%), Gaps = 48/404 (11%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALF---SVSGSSTVVSVGRQKVPFSSF 56 MLE +R+ SR+++ I ++ F+ +G + + + ++V ++V + Sbjct: 1 MLEQLRQNSRSFLIWILFGIIIAAFVFTFGTQSDVSFSCTGPSADYAMTVDDEEVGIPAL 60 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 IG S+ R+ + LD L+ L Q + G + Sbjct: 61 RYGLNT--------IGRSGQSKAQRA----QFALDGLLKREILAQASAEAGFHVSNEMAQ 108 Query: 117 GEIAR-------SP----LFHGKDNKFSHDVFVSRLAREGINE-KEYIDHYTKMLSRTDV 164 I P + F + + + G++ ++I+ + L ++ Sbjct: 109 IAIREGDIYVLTMPVDGKSLYFDSGYFDDERLKAWVNGMGLSSLGQFIEEQQRELEAQNM 168 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + + + ++ + + A ++ + + Sbjct: 169 LELIRSAAVSTPEEARARFIYENTKATLAVVQFRPGDYIRKIVLTPADTQKYLDDNRAE- 227 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--- 281 L+ KE +I Q + + K P E + Sbjct: 228 -VQAKYDADAALYKGRGKEVQIR------QIFFARQKPAVLRPGQEASEPAAGEEEDPAL 280 Query: 282 -EADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKE--YIPDVSLADSIFSLAK 334 A +A + G F +A E + LG S+E + LAD I L Sbjct: 281 VAARQARVRIVGGADFAAVASELSEDERTKAKGGYLGWRSQENPGLGARELADGIKELG- 339 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 G+ + VI G+ + + ++ +SF +V ++A QM + Sbjct: 340 AGEVSEVISVPRGFYVFKIEGVREG-DLSFDQVALELAEQMAVE 382 >gi|149181601|ref|ZP_01860095.1| post-translocation molecular chaperone [Bacillus sp. SG-1] gi|148850715|gb|EDL64871.1| post-translocation molecular chaperone [Bacillus sp. SG-1] Length = 313 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 23/227 (10%) Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE--------- 228 L+DQ + D I + ++ + + K ++Y E Sbjct: 73 LVDQYGEAALDTLIADKI-VELESDEQKIKVTDGEIEEELHKLHESYGDEEAFNQALTSS 131 Query: 229 -------YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 I L + ++ I++D++Q +E NK+ + E ++ N++ Sbjct: 132 GTSLQSVKDNIHSYLLTKKLLQDRVSITDDQVQEYFETNKDSFAQQEQVEASHILVENEE 191 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 A E + L G+ F QLAEE S LG F+K + + FS+ + + Sbjct: 192 TAKEVKEMLDNGEDFAQLAEEYSVDTSNAGSGGELGYFAKGEMV-AEFEEKAFSM-EIEE 249 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + I FG+ I V++ K + ++ K++I + + Sbjct: 250 ISNPIETEFGFHIIKVTDKKEAEEAVLEDHKEEIQEILYEQALQTEY 296 >gi|253681183|ref|ZP_04861984.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum D str. 1873] gi|253562619|gb|EES92067.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum D str. 1873] Length = 246 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + V++ ++++++ E++ Y NK+ + E + + ++ N++ A++ + +K Sbjct: 79 ALTQMSVNKVLSEVKVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANKIAEKIKD 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F + A+E S +LG F + + ++ F+L + G + + FGY Sbjct: 139 GMSFDEAAKEYSTCPSKAQGGNLGRFGRGQMV-PEFEEAAFNL-EIGKLSEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + + SF EVK I + + + K + L+ Sbjct: 197 LIEVEDKNEATEKSFNEVKDMIKANLIQQRQTAKYTTFVEELKNK 241 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 85/260 (32%), Gaps = 34/260 (13%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 EI+ +++ ++ P+ R F ++ + L + F +E Sbjct: 13 EITERDIEVAIKRF------PQERQA---YFAGEQGRKQLLDQLVAFELFYAYGKENELD 63 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 + + ++ D++ ++ + V V + + +F Sbjct: 64 KTQEFIDGI------EIMKKDALTQMSVNKVLSEVKVTDK-----EVEDYYTANKKNFV- 111 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 + + +E ++ E + G S DE ++ + G+ + Sbjct: 112 ----VGETVSAKHILVDNEELANKIAEKIKDGMSFDEAAKEYSTCPSKAQGGNL-GRFGR 166 Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486 G+ V P E+ F + + V G Y +++++ A ++ EV + Sbjct: 167 GQMV---PEFEEAAFNL----EIGKLSEPVKTQFG-YHLIEVEDKNEATEKSFNEVKDMI 218 Query: 487 KKDWKTVKTAEEVSSKANQL 506 K + + + ++ +L Sbjct: 219 KANLIQQRQTAKYTTFVEEL 238 >gi|313672612|ref|YP_004050723.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] gi|312939368|gb|ADR18560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] Length = 313 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSL 290 + K I+I+ E + YEKNK+ + PE+ ++ N K+A D ++ L Sbjct: 140 NSIAKDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSKIDSIYKEL 199 Query: 291 KKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K GK F +LA++ G + + LG F + + + FS G F+ +G Sbjct: 200 KSGKSFEELAKKYSQDGSAANGGDLGFFPRGAMVK-EFENVAFS-TPAGKFSEPFKTQYG 257 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 Y I V+ +P+ T +++EV I ++R+ K + + + Sbjct: 258 YHIVKVTEKRPAKTYTYEEVSNHIEGKLRMDKLKGILDKKVEE 300 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 5/160 (3%) Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 IA I F E KDI + KAS + + + + A +D I + K Sbjct: 142 IAKDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSK-IDSIYKELK 200 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL----FRVFGKDDPLSKDHTVALPDGSYMW 465 L +D + + + F P K Y Sbjct: 201 SGKSFEELAKKYSQDGSAANGGDLGFFPRGAMVKEFENVAFSTPAGKFSEPFKTQYGYHI 260 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 V++ E PA+ EEV ++ + K + K + Sbjct: 261 VKVTEKRPAKTYTYEEVSNHIEGKLRMDKLKGILDKKVEE 300 >gi|78224732|ref|YP_386479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] gi|78195987|gb|ABB33754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter metallireducens GS-15] Length = 333 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 109/363 (30%), Gaps = 78/363 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + V + + + L ++ LD+ L+ L+ + Sbjct: 26 NRILAVVNDEIITSYAVEKEKATILKEAERQQPPPPPESLV---HLDETALNRLIDKKLV 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q + ++ ++ V I + NK S + VS LA +G++ +Y + L Sbjct: 83 EQKVRELDIKVSEEEVRQAIEDV----KRQNKLSQESLVSALANQGLSFDQYKVQIREQL 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R +V V + + +++E Sbjct: 139 ERLRLVSQ---------------------------------EVRSKIQVGEREMREYYEA 165 Query: 220 YKDNYRAPEYKRIS--YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + E R Y D +++ Sbjct: 166 NPGRFGGEENFRARNIYFKLDEKMPADQVK------------------------------ 195 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 A + GK F +LA + + LG+F K I +S+ + Sbjct: 196 KIMTTALTVLHEARDGKDFAELARQHSDDPAAKNTGGDLGTFRKGDIL-PEFEESLIKM- 253 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K G+ + +I+ S G I + F++VK ++ + + K+ E+ + L + Sbjct: 254 KPGEVSDLIYVSGGLHIVKLEARFAGTPKPFEQVKAEVEDILYRKKSEERFNQWVADLRK 313 Query: 394 FLA 396 A Sbjct: 314 GAA 316 >gi|284040856|ref|YP_003390786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale DSM 74] gi|283820149|gb|ADB41987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale DSM 74] Length = 706 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 77/718 (10%), Positives = 185/718 (25%), Gaps = 124/718 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV------SGSSTVVSVGRQKVPFSS 55 + IR+ S + + ++ V +++ + L V + Q + + Sbjct: 4 INKIRERSG-----LAVGIIAVSLILFIVGGDLLGGRSLLFGGNQQEVGEIAGQSIDYQE 58 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 F + Q+ G + + ++ + L+ + + +GL+ + Sbjct: 59 FNAKVDELRAQFEQQSGRAPVDQDLVQ--IREQAWNQLLFEIAYQKEFDKLGLQVTSEEL 116 Query: 116 WGEIARS-------PLFHGK-DNKFSHDVFVSRL-------AREGINEKEYIDHYTKMLS 160 + + F F +S L A++ + + Sbjct: 117 VDMVQGNNISPAVRQAFTNPQTGVFDKSSIISYLKGLKNLPAQQQAAWAGFEKNLASDRL 176 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN---------------------- 198 R G+ + + + + +V ++ + Sbjct: 177 REKYEGLMRLSVFATTAEAQKEYQAQNSKANVKFLFVPYYTINDTTVKVTDSQLEDYLSK 236 Query: 199 ------------NRHVPAIADPSNAVLTQWFEK------------YKDNY---------- 224 ++V PS + + + + Sbjct: 237 HKDEYPGSDSRSIQYVTFSVAPSKEDSSALYTQIKSLARGLGAATNDSTFAQQNSDVRVP 296 Query: 225 ------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 PE R + F Y+ K + ++ Sbjct: 297 LYLTAGEMPEQLRAAIPTFAPGGIYGPFR--EGNTYFIYKYGGTKRDTNFTARASHILIQ 354 Query: 279 NQKEADEA-----------FQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + AD A + ++ G F LA+ S LG F Sbjct: 355 TKGLADSAKADARRRAEGILKQIQGGASFEALAQTNSDDGSRSVGGDLGYFKNNGQMVKP 414 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEK 383 ++F G ++ FGY I +V+ K + + K I +Q +A K Sbjct: 415 FETAVFGATSAGLIPRLVETEFGYHIINVTQPKTNVLYRIAAIGKAITPSQTTRDEALRK 474 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + E + +P + G EV Q++ Sbjct: 475 ADQFASDVHTKEEFDAKVKEDKSLVVATADRIPEGANQINALTGSEV------RQIVRWA 528 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 F ++ Y+ + + + ++ + K Sbjct: 529 FNDKTDINTVSEPFEVGDQYVIAVLTNKTSKDKVSINDFRNELTAKVRNEL-------KG 581 Query: 504 NQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQINRMDNENKFFGYDGIS--QVFSGPVEM 559 Q++ + I + GA + T +N + G D ++ + F Sbjct: 582 EQIISKLGNASGTLESISQKYGAGALVETVEDVNLATGFLRSAGVDPVALGKAFGLKPGK 641 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 G ++ V+ + + + + + + Q + + + +K V Sbjct: 642 RTKPFAGEGGVLIMEAVSLTPAPAIADYALYKTQIQQNNTQRVGFYINEAIKDAAKVE 699 >gi|258543673|ref|YP_003189106.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-01] gi|256634751|dbj|BAI00727.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-01] gi|256637807|dbj|BAI03776.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-03] gi|256640861|dbj|BAI06823.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-07] gi|256643916|dbj|BAI09871.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-22] gi|256646971|dbj|BAI12919.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-26] gi|256650024|dbj|BAI15965.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-32] gi|256653014|dbj|BAI18948.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656068|dbj|BAI21995.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter pasteurianus IFO 3283-12] Length = 352 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 6/157 (3%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQG 304 ++D ++ Y++N + + ++ + EA++ + LK G F +LA ++G Sbjct: 181 TDDAIKQYYDQNYAGKPAEKEVHARHILVKTEAEANDVIKKLKAGADFGKLAAHVSTDKG 240 Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + + LG F K + + +D+ F++ K + + +GY + V + + + Sbjct: 241 SAQQNGGDLGWFKKTDMI-PAFSDAAFAMKKGEISSTPVKSQYGYHVIQVLDTRTDPVPT 299 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V+ I + E V + +++ + Sbjct: 300 LDAVRDKIRQALIQKYVREAVDKATNQVKIVRFDPNT 336 >gi|92116105|ref|YP_575834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis X14] gi|91798999|gb|ABE61374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter hamburgensis X14] Length = 308 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 10/176 (5%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I+++ ++ Y ++ S E ++ P ++EA + LKKG F +LA+++ Sbjct: 127 KAAITDEAMKTVYADASKQITSEEEVHARHILVPTEEEAKKVEDELKKGADFAELAKKES 186 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+KE + + F+L + G + + FG+ I V + Sbjct: 187 KDPGASDGGDLGFFTKEQMV-PEFSKVAFAL-EPGKISDPVKTQFGWHIIKVEEKRARKA 244 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 +F +VK I + ++ V + + + +D+ + K Sbjct: 245 PAFDQVKPQIEQFVTRKAQADYVAKLRETAKIER-----LDKPAEPAKAGGDKTGP 295 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 91/264 (34%), Gaps = 15/264 (5%) Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVS--IDLPLVDFAGKDV 425 D+ + SE + D EE L G MD +++E ++S ID+ ++ A +D Sbjct: 38 DDLNPVLAKVNGSEIRQSDVNVAEEELGPGLAQMDPAAKQENVLSFLIDMKIIAKAAEDK 97 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 K + + D L+ + A+ D ++ + ++ EE + Sbjct: 98 KIENSEDFKKRLAFARDRLLMDKLLASEGKAAITDE---AMKTVYADASKQITSEE---E 151 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 V V T EE V + K+G +F ++ K ++ + + Sbjct: 152 VHARHILVPTEEEAKK-----VEDELKKGADFAELAKKESKDPGASDGGDLGFFTKEQMV 206 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605 + F+ + P++ + + KV + D+ + Q + + Sbjct: 207 PEFSKVAFALEPGKI-SDPVKTQFGWHIIKVEEKRARKAPAFDQVKPQIEQFVTRKAQAD 265 Query: 606 VIAYLKSQYSVTVHDNLIQRYLDG 629 +A L+ + D + G Sbjct: 266 YVAKLRETAKIERLDKPAEPAKAG 289 Score = 38.0 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 9/149 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 +E+ K++E+ L G E++++E P G + +P ++ F + Sbjct: 162 EEEAKKVEDELKKGADFAELAKKES----KDPGASDGGDLGFFTKEQMVPEFSKVAFAL- 216 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 +P V G + ++++E + ++V +++ A+ V+ Sbjct: 217 ---EPGKISDPVKTQFG-WHIIKVEEKRARKAPAFDQVKPQIEQFVTRKAQADYVAKLRE 272 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 +E + G + N Sbjct: 273 TAKIERLDKPAEPAKAGGDKTGPAKPANG 301 >gi|323706239|ref|ZP_08117806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534403|gb|EGB24187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacterium xylanolyticum LX-11] Length = 301 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 12/155 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K +++++ E Y NK ++ E+ ++ ++K A+E + L KG F LA++ Sbjct: 141 KNVKVTDSEALKYYNDNKSQF---EVVKASHILVSDEKTANEIYDKLMKGANFADLAKQY 197 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 S LG F++ + D+ F+L K G+ + + +GY I + Sbjct: 198 SIDTSTKDNGGELGEFTRGTMVK-EFEDAAFAL-KPGEISKPVKTQYGYHIIK---SEAK 252 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +T SF E K I + + K + + + L++ Sbjct: 253 YTKSFDEAKSSIISYLENNKKQDIFNQKSEALKKA 287 >gi|282882218|ref|ZP_06290857.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B] gi|281297983|gb|EFA90440.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B] Length = 375 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 100/244 (40%), Gaps = 31/244 (12%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 + G + S L +DQ + + ++ ++ + + ++YK Sbjct: 65 LEGPIDPTGKQSKLTVDQYLKDITIKDLTETEIIKQDAAANNIKVEDSEIQKILDQYKAQ 124 Query: 224 YRAPEYKRISYILFDV-------------------HEKEKKIEISNDELQAEYEKNKEKY 264 E + + EK K I++++D+++ Y+++K+ + Sbjct: 125 LGGDEQFKAYLDSLGIPLDYLKEVLKNQTLVGKYTQEKNKNIKVTDDDVKKYYDEHKDDF 184 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 F ++ + K+A+E + + KG KF ++A+++ K LG F+ + Sbjct: 185 FKA---KASHILVDDLKKANEIKKEIDKGAKFEEMAKKESKDTGSATNGGDLGEFTNGQM 241 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S D+I + +KG+ + I FG+ I + KP +F EVK +I +++ K Sbjct: 242 V-QSFNDAIKKM-EKGEISDPIKSDFGFHIIKLKERKP---RTFDEVKDEIKSKLTQEKY 296 Query: 381 SEKV 384 + + Sbjct: 297 EKAI 300 >gi|258593862|emb|CBE70203.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 337 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 79/201 (39%), Gaps = 5/201 (2%) Query: 2 LEIIRKASRTWVAK---IFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFI 57 L+ IR ++ + + FL+WG + G + + +V +++P++ + Sbjct: 6 LKRIRGYTKALSVTLWLVIFAFIGTTFLVWGFRSTSGTGGGVVNPIGAVEGEQIPYAEYQ 65 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 +++++ +K+G + + + L ++++ L+ L +GL + Sbjct: 66 QAYQRQYQQYQEKLGDKFDEKILEQLNLKGQVVEGLIGRHLLLHEANRLGLVISPDELVA 125 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 EI P F F D ++ L + + + + + L V GG+ Sbjct: 126 EITAIPAFSDATG-FKRDKYLRTLQSARLTPERFEESLREDLLLRKVEEWVKGGVHLIPD 184 Query: 178 LLDQAKRFYFENRSVDYIVLN 198 +A RF + +Y++ + Sbjct: 185 ETWEAFRFNRASVKAEYVMFS 205 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 88/244 (36%), Gaps = 12/244 (4%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K+L + ++ G V G+ +LLL +A R S D +V +PA +D + + Sbjct: 85 EKILEQLNLKGQVVEGLIGRHLLLHEANRLGLVI-SPDELVAEITAIPAFSDATGFKRDK 143 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKK-----IEISNDELQAEYEKNKEKYFSPEIR 270 + + PE S + K ++ + + DE + N+ E Sbjct: 144 YLRTLQSARLTPERFEESLREDLLLRKVEEWVKGGVHLIPDETWEAFRFNRAS-VKAEYV 202 Query: 271 TVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLAD 327 L Q+ A + L K K + ++ G S+ + +IPD Sbjct: 203 MFSDL--KTQQAAVQNVAGLAKSNKPWEEIVRASGLKPVTSDFFSWDRSLPHIPDQERFK 260 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++G +P+I G + V + K F+ K + + K + + Sbjct: 261 EAALVMERGAVSPIIQGEKASYLLRVIDRKDPDAAEFEREKAQFSRGLLQRKREQVFADW 320 Query: 388 YKRL 391 +++ Sbjct: 321 IRQV 324 >gi|227499517|ref|ZP_03929624.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC 35098] gi|227218396|gb|EEI83647.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC 35098] Length = 360 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 109/251 (43%), Gaps = 19/251 (7%) Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR--FYFENRSVDYIVLNNRHVPA 204 +E + S+ + V M L+ + K+ +++ VD ++ + Sbjct: 64 SEMSFYASMLA--SQQQLKNSIVTMMVQDKLIANDIKKNNIKIDDKDVDNALMQSVQNFG 121 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 + + L + ++ K + Y ++ ++S+DE++ +E+NK+++ Sbjct: 122 GQEQFDKTLDD-YNMDIKKFKETLKKDLMYKKHREW-FDENNKVSDDEIKKYFEENKDQF 179 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYI 320 ++ +++ A E L G+ F +LA+E K + LGSF K + Sbjct: 180 T---KVDASHILVDDEETAKEIKAKLDNGEDFAKLAKEYSKDTASAKNGGELGSFGKGQM 236 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ FS+ K+G+ + + FGY I +++I S+++ K++I +++ K Sbjct: 237 VK-EFEEAAFSM-KEGEISNPVKSQFGYHIIKINSISD----SYEKSKEEITKKIKDKKY 290 Query: 381 SEKVKEDYKRL 391 ++ +K+ + Sbjct: 291 ADYIKKLHDEA 301 >gi|91218479|ref|ZP_01255419.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus torquis ATCC 700755] gi|91183360|gb|EAS69763.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus torquis ATCC 700755] Length = 704 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 83/686 (12%), Positives = 194/686 (28%), Gaps = 149/686 (21%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR+ RT + + + F++ L + S +S+V +G +++ F Sbjct: 4 LSKIRE--RTVFLIVIIALALFAFVLTDLFKNGGFSSDKATSSVGVIGDEEIGREEFAAE 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115 + + ++ + + +A L + L Q E +GLE ++ Sbjct: 62 VENIVQQSQGRVSTLQAANQAWENNLRR---------TLLKQEFESLGLEVGADQITDAM 112 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGMF 168 ++ P F F +A I + + M Sbjct: 113 SQQLVGDPRFSNDAGFFDEAKLKQFIAELKITSPQQYQQWVNFEQSMEVNAKSQLYFNMV 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDY----------IVLNNRHVPAIADPSNAVLTQ--- 215 G++ + L Q +N + ++ + + + + Q Sbjct: 173 KAGVQTTLLEGKQIYHQENDNLTFEFVKVPFDKGEEVEVTKSDIQNYINVHKERFQQDAK 232 Query: 216 ------WFEKYKDN------------YRAPEYKRISYILFDVHEKEKKIE---------- 247 +FE+ E S L + + + E Sbjct: 233 RNLEYVYFEETPSEEDNSFVLDEVTKLTTDEKVEQSEGLSNFNTTDNVQEFIAVHSETPY 292 Query: 248 -----------------ISNDELQA----EYEKNKEKYFSPEIR-------TVEQLVFP- 278 I ++ YE K R ++ Sbjct: 293 NDNYTFEYNMKGEFALAILELDVNDVYGPYYENESYKISKLVERTQKADSVKTSHILVTY 352 Query: 279 -----------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLG----SFSKE 318 ++EA SL + KF +LA E G + Sbjct: 353 NGSRVDASVTRTKEEAKVLADSLTDVVRRNSDKFAELAGEFSSDRQSAENGGQLNWITYG 412 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + D +F AK ++ FG+ + ++ + + + + +++ Sbjct: 413 ALV-PEFNDYVFDEAKVN-SYGLVETDFGFHVIYLED------------RTSLKDALKVA 458 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEIS------RREKIVSIDLPLVDFAGKDVKGKEVAA 432 +++V+ K L E + + + + + + V+ G + + + Sbjct: 459 TVTKRVEPSEKTLNELYRSSSKFELSAKDNDFRKEADSTGLTVKPVN--GINKLDESIPG 516 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 + + ++ F + + G Y+ ++ + + EE V + Sbjct: 517 VGRQRSIVKWAFEGETKTGDIKSFDTGSG-YIVARVTKISKKGLQSTEEASAIVTPILRK 575 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGIS 550 K AE++ S+ EG++ + G + + +N + + Sbjct: 576 QKQAEQIKSQI---------EGQDLNAVASLFGVNKQKASSVNISNPFIPGGGTEPKIVG 626 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKV 576 F+ V + P++ V K+ Sbjct: 627 AAFAMSVNDI-SKPLQGKTGVYVIKL 651 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 25/234 (10%) Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV----SLADSIF-SLAKKGDFTPVIHGS 345 K F + A+ G ++ ++ + E IP V S+ F K GD GS Sbjct: 485 AKDNDFRKEADSTGLTVKPVNGINKLDESIPGVGRQRSIVKWAFEGETKTGDIKSFDTGS 544 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 GY++A V+ I S +E + +R K +E++K + G ++ ++ Sbjct: 545 -GYIVARVTKISKKGLQSTEEASAIVTPILRKQKQAEQIKSQIE--------GQDLNAVA 595 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + V+ + + G V PL Sbjct: 596 SLFGVNKQKASSVNISNPFIPGGGTEPKIVGAAFAMSVNDISKPLQGKT-------GVYV 648 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 +++ E A+ +T K + + ++E K K D Sbjct: 649 IKLLEKNGAQALP----SYRAVAKEETEKRTRSLLNPRTSPIIEALKNSKEIED 698 >gi|90020386|ref|YP_526213.1| L-ribulokinase [Saccharophagus degradans 2-40] gi|121956457|sp|Q21MS8|SURA_SACD2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|89949986|gb|ABD80001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus degradans 2-40] Length = 430 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 52/407 (12%), Positives = 124/407 (30%), Gaps = 62/407 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + SQ G + L+K+I+D L+S Sbjct: 31 DRVVAVVDNRAITQTELDSRVQDVQVR-SQAAGMRLPEADI----LNKQIIDQLISETLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + + G++ V I ++ + + FV +LA EG++ E+ + L Sbjct: 86 LEMADRYGVQVSDQEVNASIGNI----IQNAQMTEQQFVQQLASEGVSINEFRASIRRQL 141 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSN 210 + + V +R S +D + V + L + + Sbjct: 142 TMRSITEGLVSRRIRISEQEVDNFLKSADAQFWVSPDYHLGHILVALPSSPSSEAIVEAE 201 Query: 211 AVLTQWFEKYKD--NY----------------------RAPEYKRISYILFDVHEKEKKI 246 +EK K N+ ++ E + L Sbjct: 202 EKANALYEKLKAGANFAEVAIAESNGPSALQGGDLGWRKSAELPTLFAELLPSLNNGDVT 261 Query: 247 EISNDE----LQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKG 293 + + + + YE + ++ + + + Q + G Sbjct: 262 KPTRSQAGFHIIKLYESRGGQKQIVNQTRARHILVKTSEILNDAKAEAKLKDIRQQILDG 321 Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F +LA+ + + S LG + + ++ + K+G+ + FG+ Sbjct: 322 ADFAELAKTHSEDIGSRMSGGDLGWATPGTFV-PAFEKTM-AETKEGEISQPFKSRFGWH 379 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + +++ N + + ++ + + L + Sbjct: 380 IMKVEERREEDMTQ-EALRQKARNMIMSRRFEDETQIWLQELRDEAF 425 Score = 68.5 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 75/205 (36%), Gaps = 26/205 (12%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 + +RA ++++ ++I IS E+ + +++ + ++ Sbjct: 131 NEFRASIRRQLTMRSITEGLVSRRIRISEQEVDNFLKSADAQFWVSPDYHLGHILVALPS 190 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326 +++A+ ++ LK G F ++A + +L LG +P A Sbjct: 191 SPSSEAIVEAEEKANALYEKLKAGANFAEVAIAESNGPSALQGGDLGWRKSAELP-TLFA 249 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKAS 381 + + SL GD T G+ I + + + + + + KA Sbjct: 250 ELLPSL-NNGDVTKPTRSQAGFHIIKLYESRGGQKQIVNQTRARHILVKTSEILNDAKAE 308 Query: 382 EKVKEDYKRLEEFLALGTSMDEISR 406 K+K+ +++ + G E+++ Sbjct: 309 AKLKDIRQQILD----GADFAELAK 329 >gi|15893571|ref|NP_346920.1| peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum ATCC 824] gi|15023118|gb|AAK78260.1|AE007541_5 Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum ATCC 824] gi|325507691|gb|ADZ19327.1| Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum EA 2018] Length = 247 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 5/168 (2%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ + + I +++ E++ YE NKE + PE + ++ +++A + + Sbjct: 76 RKQILTHASLDKIFSDIVVADSEVEKYYEANKEMFKDPEKVAAKHILVQTEEDALKIREE 135 Query: 290 LKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +K+GK F + A E S LG+F++ + ++ FS + G+ + F Sbjct: 136 IKEGKTFEEAAAEYSSCPSKERGGDLGAFTRGQMV-PEFEEAAFS-QEIGEVGAPVKTQF 193 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 GY + V F VK I N++ + S K +L+ Sbjct: 194 GYHLIKVEGKIEPAQRDFPSVKDAIKNRLLQERQSMKYSWYIDQLKNK 241 Score = 38.0 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 12/140 (8%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 V V+T E+ + E KEGK F + + + Sbjct: 114 EKVAAKHILVQTEEDALK-----IREEIKEGKTFEEAAAEYSSCPSKERGGDLGAFTRGQ 168 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMM 598 + FS + V P++ Y + KV K+ P Q KD + L Q Sbjct: 169 MVPEFEEAAFSQEIGEVG-APVKTQFGYHLIKV-EGKIEPAQRDFPSVKDAIKNRLLQER 226 Query: 599 NKDLLDSVIAYLKSQYSVTV 618 I LK++Y V + Sbjct: 227 QSMKYSWYIDQLKNKYKVEI 246 >gi|148264649|ref|YP_001231355.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146398149|gb|ABQ26782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 326 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 52/355 (14%), Positives = 114/355 (32%), Gaps = 79/355 (22%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V + ++ S ++ + + + ++ LDNL+ + Q Sbjct: 37 AVVNGAPISREECNGELERLKRSRSVRL---FSPALLKE--IQQEALDNLIRRELIYQES 91 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRT 162 G+ V E+AR +F++++ F S L+ ++E + Sbjct: 92 RKGGIGVAATAVDEELARLK------TRFANEMEFSSALSSLHVSEASLRNIV------- 138 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 R + +R + ++ ++ + D Sbjct: 139 --------------------------ERGIAVRTYIDRQFAGQSTVTDEEKKGYYRSHPD 172 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 ++ P RIS+IL K +K+ Sbjct: 173 TFKRPLQVRISHILVRTGGMTGKAR-----------------------------AEAEKK 203 Query: 283 ADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + + + KG+ F LA G LG F + + V + D++ L K G+ + Sbjct: 204 IEGIREKVGKGESFDALARAYSECGSKEQGGDLGFFRRGEMARV-VEDAVMDL-KVGETS 261 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 ++ FG + +++ KP ++++ + I+ ++ KA EK L + Sbjct: 262 GIVEDRFGLHLIRLTDRKPEQVIAYEAAEGKISEYLKQEKAMEKANRYAGDLRKK 316 >gi|255534296|ref|YP_003094667.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium 3519-10] gi|255340492|gb|ACU06605.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium 3519-10] Length = 716 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 194/730 (26%), Gaps = 144/730 (19%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR R W+ + V + F++ S + V +++ + + Sbjct: 4 LGQIRN--RPWLLMGIIAVAMLAFVVNPDSLEQLFGAKPGVYGKVNGEEITKEEYDDQL- 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + GLD++ +V + Q + +GL W ++ Sbjct: 61 -------FMLQQQAQQQGQPATGLDEQAWQMMVQSKLIKQQFDKMGLTLTEDMFWNQLQF 113 Query: 122 SPLFHGKDNKFSH----------------------DVFVSRLAREGINEKEYIDHYTKML 159 P+F F +++ + L + Sbjct: 114 DPMFAQNQENFDAKGNFKGQEIKKQIAELQTSGNVEMYNNWLRTRR--------TIEYRM 165 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE------------------------------- 188 V G+ S ++ + + Sbjct: 166 MARQVFANVSTGITASKKEAEEMMKQRDQVANIDFVKIDYNSYAQKNPVKVTTQDLADYI 225 Query: 189 -----------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY------KDNYRA----- 226 +R++ + P + A + + F + K+N++ Sbjct: 226 KKHPILFKRDASRNIGLVYFPAAASPQDEAVTQAEINKLFAQGTEMSGGKENFQNTTNDS 285 Query: 227 ------------PEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSP-EI 269 P+Y + + +K + + Q Y +K P + Sbjct: 286 MFVSLNSDLPFNPQYFSAEQLPVSIKDKVAAASVGTTFGPYKEQNFYVVSKLLDKKPSDS 345 Query: 270 RTVEQLVFP------------NQKEADEAFQSL--------KKGKKFIQLAEEQGKSLSD 309 ++ +++EA + S+ +K +F++ + + G + Sbjct: 346 TLSRHILVSYKGNQAGGNETRSKEEAKKLADSIGAVLKSAPQKFTEFLKYSADPGSAGQG 405 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGD-FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 S+G + + + LA G T V+ +GY I ++ + K +V Sbjct: 406 GSVGWTTPAT---PFVPQYLSFLANNGKGATGVVETDYGYHIINIEDKKTGAMT--YKVA 460 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 + K +V R + + G S ++ S K + G+ Sbjct: 461 NLVKTIKASDKTENEVYTKATRFIQQV-QGKSFNDFSNLAKKGNYQFFNPKEIGRFSGQL 519 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + ++ F K + G + + A E V ++ Sbjct: 520 PGLGTDKDQDIIAWAFHKKRSKGDTEIFTVDGTGDRIVAYVNGIQDAGTADPEAVRDQIE 579 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K A+ + K N + I K G++ ++ Sbjct: 580 PIIKNKILAKRIVEKINTTKA------SSLDQIAKAFGSTKMSGQVNMLSPQVAGAMEPK 633 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 F + YV+ K + + + + + ++ +++ Sbjct: 634 VAGAAFGVAKGKLSMPVEGMTGVYVLVKNSETINKQPGDIKQVTQAIAGQNSQQFGQALL 693 Query: 608 AYLKSQYSVT 617 L+ + Sbjct: 694 KSLQDNADIE 703 >gi|78189176|ref|YP_379514.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium chlorochromatii CaD3] gi|78171375|gb|ABB28471.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium chlorochromatii CaD3] Length = 697 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 78/651 (11%), Positives = 196/651 (30%), Gaps = 86/651 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSF 56 L +R + I L VL FL WG+ + V + + + Sbjct: 4 LSSLRNKTH-----IILYVLLASFLALIVFEWGMESNFIKPQ--NVAGKVNGASISYQEY 56 Query: 57 INSWKQELGMISQKIGFV-VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 N++K + + + + E L ++ ++LV L++ G+ V Sbjct: 57 DNAYKALSENVRRANPELELTPEM--EHELQERAWNSLVDQRLLEEQFRKFGITVQDREV 114 Query: 116 WGEIARSPL--------FHGK-DNKFSHDVFVSRLA--REGINEKEYIDHYTKMLSRTDV 164 SP F K S + + L + Sbjct: 115 LEA-MNSPQPPMVIRQYFTDPATGKVDRQKLESARRDPANRDMWLQLEKYVRMELQENKL 173 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKD 222 + F R ++ + + +I L ++ + ++++++K+ Sbjct: 174 LRAFQTFERVTDREISDMINRKVSLFTASFIPLPLSAAGDDKRFPITDDDIKKYYDEHKE 233 Query: 223 NYRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +R + +++ + F + K EL Sbjct: 234 QFRQEKPSRKVETVFFPLVPSAKDSAAVRQEL---------------------------- 265 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFT 339 + K + + + Q + ++ ++ P ++IF+ + G Sbjct: 266 --EALRADFSKSQNDVDFVKVQSDRSNSANVVLTRADFSPLA--GNAIFNTSSLAAGSLI 321 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + + + V ++P+ + + EKV++ ++ + L G Sbjct: 322 GPFADNGEFRLLKVVRVQPAVQPIARASHILLRFNPANKAEIEKVQQLTMQIGQQLQAGV 381 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + ++++ G + V + VF + + P Sbjct: 382 PFETLAKQYSADPGSAENGGDLGWFSPDRMV------PEFSKAVFNS-----RPGAIIGP 430 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFR 518 + V I + R L V ++V + + + ++ E +A ++ ++G F Sbjct: 431 IQTQFGVHIIKVTGFDQRAL--VASEVVRTIRSSSESMESQRRRAMAFQVDAKEKG--FA 486 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVT 577 G + +N+ R D ++ FS + IE+ + V ++T Sbjct: 487 KSAATAGVKVEESNEFTRRMAIRPLGYNDKVATFAFSAKEGDI-SDVIESKKGFYVARLT 545 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ--YSVTVHDNLIQRY 626 + ++ + L++ A L+ + + V + +++ Sbjct: 546 AKH--DEGYRSLDKDAKERIKQELLVEKKGAALQQKLTAAAKVPNATLEQI 594 >gi|166030348|ref|ZP_02233177.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC 27755] gi|166029868|gb|EDR48625.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 6/169 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ + + ++++++E++ YE NK ++ + ++ ++++ ++ +S Sbjct: 90 RKDILARLAMKQLFDSVKVTDEEVKDYYEANKSQFKKGATVHAKHILTDSEEKCNQILES 149 Query: 290 LKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G+K F A+E S LG F K + D+ F+ A+ G + Sbjct: 150 IVSGEKVFEDAAKEFSTCPSGQRGGDLGEFGKGQMVK-EFEDAAFA-AEIGHVVGPVKTQ 207 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FGY + V K + SF EVK+ I +Q++ K + + L E Sbjct: 208 FGYHLIKVEEKKDAAESSFDEVKEQIKSQLKQQKQGDAYSKKVAELTEK 256 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 5/159 (3%) Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + + E K + A + + ++ + L S +++ Sbjct: 107 KVTDEEVKDYYEANKSQFKKGATVHAKHILTDSEEKCNQILESIVSGEKVFEDAAKEFST 166 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 P G + + + E F Y ++++E A Sbjct: 167 CPSGQRGGDLGEFGKGQMVKEFEDAAFAAEIGHVVGPVKTQF-----GYHLIKVEEKKDA 221 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + +EV +K K K + S K +L +Y ++ Sbjct: 222 AESSFDEVKEQIKSQLKQQKQGDAYSKKVAELTEKYKEK 260 >gi|332703852|ref|ZP_08423940.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554001|gb|EGJ51045.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 334 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 53/356 (14%), Positives = 111/356 (31%), Gaps = 83/356 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGAT 98 V V Q + L +S G +N++ + + + KK+LD LV Sbjct: 50 DRIVAVVNGQVITSYDLDRELAPYLMQLS---GRKLNAQDEQQLTVVRKKLLDRLVDDIL 106 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L + + LE + V I + F ++ D+ L RE + +EY + + Sbjct: 107 LLMEAKRLNLEVNDTEVENHIRQ---FRQSNSMTEEDLGRQ-LQRENMTREEYKRNIRES 162 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + R V+ V ++ + ++++ Sbjct: 163 MLRHRVLSFM---------------------------------VRRKVLVTDEEILRYYD 189 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++K +Y + + IL + Sbjct: 190 EHKSDYTQAKEVELGLILLPPN-------------------------------------- 211 Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKG 336 +++D Q L K + F + A + K S GS + +++ + G Sbjct: 212 --EDSDGLVQRLGKAEISFEEAARKYSKGPGAQSGGSIGRLKWSELASQWREALAQIHPG 269 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + I + I P S EV+++I ++ K + + E + L+ Sbjct: 270 EISEPFSIDGNKAILKLKAIIPGKERSLDEVREEIRQKLYDPKYAVQYAEYMQDLK 325 >gi|319408175|emb|CBI81828.1| peptidyl-prolyl cis-trans isomerase [Bartonella schoenbuchensis R1] Length = 316 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 83/216 (38%), Gaps = 12/216 (5%) Query: 182 AKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 R E R + + L+ + A T+ ++K A + L+ Sbjct: 76 LARLSDEQRRITVLKAYLDMQAFAKAAIEKGIDKTEVYDKR----MAIMRDNVLQQLYFK 131 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KI+ + +LQA Y+K + ++ ++ A+ + LKKG+ F ++ Sbjct: 132 QMVVDKIQ--DADLQALYDKEVAALPKEDEVKARHILVKTKEAAEAIIKRLKKGESFEEI 189 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ S LG FS + D+ FSL + FG+ I V + Sbjct: 190 AKKDSTDGSASVGGDLGYFSYGQMVKP-FEDAAFSLKVGEYTKKPVESPFGWHIIKVEDR 248 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +P +F +VK+ + Q+ + + + +++ Sbjct: 249 RPKQPPAFDDVKEVLRTQIMKDRYHALIIDLRNKVD 284 Score = 50.4 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 2/162 (1%) Query: 468 IKESIPARDRKL--EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + + A + L +EV K+D + + +A + +++ K+G++F +I K Sbjct: 135 VDKIQDADLQALYDKEVAALPKEDEVKARHILVKTKEAAEAIIKRLKKGESFEEIAKKDS 194 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 + + FS V P+E+ + + KV + + Sbjct: 195 TDGSASVGGDLGYFSYGQMVKPFEDAAFSLKVGEYTKKPVESPFGWHIIKVEDRRPKQPP 254 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 D L + KD ++I L+++ V D+ I + + Sbjct: 255 AFDDVKEVLRTQIMKDRYHALIIDLRNKVDVKYPDSHIAKLM 296 >gi|253700324|ref|YP_003021513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251775174|gb|ACT17755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 355 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 105/283 (37%), Gaps = 45/283 (15%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I + + ML++ + L QA+ E + ++ I Sbjct: 72 ITQLDVERAVKVMLAQNKIDQPL------PPELQKQAESAALEQLTAAELLYQEASKSKI 125 Query: 206 ADPSNAVLTQWFEKYKDNYRAPE--------------------YKRISYILFDVHEKEKK 245 D + ++ Q + + ++ K I + + K Sbjct: 126 PDL-DKMIEQKVSQNRQKFKTEAELVEALSALEMTLPDLEEFTRKEIVLSTYIAEHFQTK 184 Query: 246 IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVF------------PNQKEADEAFQSLKK 292 +S++E++ Y+ N YF PE ++ +++A+ + L+ Sbjct: 185 ASVSDEEVKKFYDDNLNTYFKKPESVKASHILVGTDEKATPEDRKKAKEKAEALLKRLQA 244 Query: 293 GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G++F LA+++ + +LG F +E + ++ F L K G+ + V+ FGY Sbjct: 245 GEEFAALAKDESTCPSATQGGNLGEFGREEMV-PQFEEAAFKL-KPGEMSGVVETKFGYH 302 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 I V+ + + + VK+ I ++ KA +++ +L+ Sbjct: 303 IIKVTGKQEAAAEKLESVKETIVEFLKKQKAQQELSSFIDKLK 345 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 + ++ KA L L+ + G+ F + K+ T N + + F Sbjct: 226 EDRKKAKEKAEAL-LKRLQAGEEFAALAKDESTCPSATQGGNLGEFGREEMVPQFEEAAF 284 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAY 609 + +E Y + KVT + ++ K+ + +L + + L S I Sbjct: 285 KLKPGEM-SGVVETKFGYHIIKVTGKQEAAAEKLESVKETIVEFLKKQKAQQELSSFIDK 343 Query: 610 LKSQYSVT 617 LK + + Sbjct: 344 LKKEAKIE 351 >gi|218777935|ref|YP_002429253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] gi|218759319|gb|ACL01785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] Length = 334 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 110/292 (37%), Gaps = 43/292 (14%) Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 L G++ ++ + ++L++ + F G + ++ E+ ++ +++ Sbjct: 38 VLRVNGMDFHKWEMNLAEILTQDHM---FREGAFFRPSEIPAFRQAMMES-TIWAMLIYQ 93 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPE----------------YKRISYILFDVHEKE 243 A A + ++ ++ + + E + + + Sbjct: 94 EARAAGEKADPAKVDEFIWSFQKRFPSLEAYEKGLEALHVTSEQFRRIAERYVMTQDYLD 153 Query: 244 KKIE----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAF 287 +K + +S E + Y+ ++E ++ E+ ++ ++E A Sbjct: 154 RKFDPLSKVSEAEAREYYDGHRENFYQEEMVRASHILVEFKEEDGDRADEKALITAKRIV 213 Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPV 341 + LKKG+ F A E S LG K +P L + +F + + G+ + Sbjct: 214 RKLKKGENFAAAAREYSDCESKKRGGDLGYIQKGDLPKAQLKPLEEVVFGM-EVGEISEP 272 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + FGY I +V + KP + F E+K + +M + + + + +L+E Sbjct: 273 VESVFGYHILYVEDKKPRTLLGFDEIKDKLIAKMTEDRKAAMILDHGTKLKE 324 >gi|261417144|ref|YP_003250827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373600|gb|ACX76345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 643 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 86/664 (12%), Positives = 199/664 (29%), Gaps = 61/664 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML I + ++ WV IF + + L D + S + V K+ ++ F + Sbjct: 1 MLTWINEKAK-WVIVIFAAGIAIGLLAM---DRVPDQGRSYPIGIVNDTKISYTDFDSRV 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 K + +Q ++ E+ L ++ + V A + E L A + E Sbjct: 57 KMIVQ--NQYQNQHLDDEQ--YSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNE-- 110 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 F + V ++ ++ R+ + Sbjct: 111 ----FKRNSDAV-RARLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNK 165 Query: 181 QAKRFYFEN-RSVDY-IVLNNRHVPAIADPSNAVLTQWFEK--YKDNYRAP---EYKRIS 233 + E + + +L+ L + + A E + Sbjct: 166 ADYDAWIETPAAYRWSAMLSLEDEMKNNSIPARQLQTLVGASVHPTSLEAKWSVERRMTD 225 Query: 234 YILF-----DVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEA--DE 285 Y L + + + + + + +F + + + P + A D Sbjct: 226 YELQVAVAPSSAFVVDSNSVDSVMVAGYFNAHIDSFFVQKDAAQFQYVSIPVEATAGDDA 285 Query: 286 AFQSLK-----------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-----VSLADSI 329 + + F +A + G E ++ Sbjct: 286 SIREYAMTLYYQLTDSSSTTTFEDMARVSSEDPGSAEKGGILSEDFVGRGSYVKPFEEAA 345 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F+L G + + FGY I + ++VK + + + AS + + Sbjct: 346 FAL-DSGKISEPVRSQFGYHIIKSYGNVKNAKGEVEKVK--VGHILLTVTASSNTIDSLE 402 Query: 390 R-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 + L + ++ + +++ ++ +D + A Y + L + ++ Sbjct: 403 KILTNIKKDVDAGSDLLTEAQARGLEVKTSEWVSRDGN---IGAFGYLKGLASFAWPNEN 459 Query: 449 PLSKDHTVA--LPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 ++ ++ L + ++ + + S A +R L D+K+ K + + + Sbjct: 460 LPKEESEISGVLRNNKWVVIAKKIGSFTAGERSLPLYYNDIKETLLKQKAGKAAEAYLSS 519 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565 + + KE K L T N +G I++V P+ Sbjct: 520 VAAQ-VKEWNPADTAAKIEKVELETKNASVDGFVPGFGYGNAQIARVVGKAKAGEWTAPV 578 Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVTVHDN 621 V+ KV + K V+E ++ I + + + L++ V + + Sbjct: 579 VAENGAVMVKVVSKKTPKVEEVEEAIKQDVDNSYRFGVMTAFNDYVTSLEASTPVKSNLD 638 Query: 622 LIQR 625 L R Sbjct: 639 LFYR 642 >gi|303238145|ref|ZP_07324681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio cellulolyticus CD2] gi|302594191|gb|EFL63903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio cellulolyticus CD2] Length = 249 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 75/179 (41%), Gaps = 6/179 (3%) Query: 219 KYKDNYRAP-EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + + Y E +++++ + + + K + I+ E + Y +NK + PE ++ Sbjct: 63 ENETEYLEEIERIKVNFLKQYALSKFLKSVTINEVEAKKFYNENKGLFNEPESVKASHIL 122 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333 ++ A++ + +GKKF A+E + LG FSK + + F+L Sbjct: 123 VQDEATANKILSEIDEGKKFEDAAKEYSTCPSKANGGDLGFFSKGQMV-PEFETAAFALD 181 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K + FG+ I ++ + + ++F E + + ++ K + + L+ Sbjct: 182 KGEITKTPVKTQFGFHIIKLTGKRDAMELTFSEAEDKVKAELMAKKQQAEYYKKVDELK 240 >gi|154175136|ref|YP_001408066.1| trimethylamine-n-oxide reductase 1 [Campylobacter curvus 525.92] gi|112802868|gb|EAU00212.1| trimethylamiNe-n-oxide reductase 1 (tmaoreductase 1) (trimethylamine oxidase 1) [Campylobacter curvus 525.92] Length = 272 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 23/238 (9%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 ++ + G S L ++ KR + + ++ + + DP ++ + + Sbjct: 39 LLAAAMPGFDASKLQPNEKKRIIDDLINRKLLLKDAKASGIEKDP------EYIKAVQA- 91 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 A E + + + I+ S+DEL+ Y KNK+ P ++ ++K A Sbjct: 92 --AQEGIAVELYM---RKIFDGIKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEKTA 146 Query: 284 DEAFQSLKK------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + LK KKF +LA+ ++G + LG F + + AD++FS++ Sbjct: 147 NAIIAQLKNLKGDALAKKFAELAQADSIDKGSAAHGGELGWFGQSQMVKP-FADAVFSMS 205 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K T + FGY I + KP+ VSF++ K I +++ K +++ L Sbjct: 206 KGSVSTKPVKSQFGYHIILKEDSKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQKGDAL 263 Score = 38.4 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 4/164 (2%) Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I +F KD NQ +AS + ED K +A ++ + +K Sbjct: 105 IFDGIKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEKTANAIIAQLKNLKGDALAKK 164 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKE---QLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + G G E+ + VF V G ++ + Sbjct: 165 FAELAQADSIDKGSAAHGGELGWFGQSQMVKPFADAVFSMSKGSVSTKPVKSQFGYHIIL 224 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + ++S PA E+ +++ K K + K + L + Sbjct: 225 K-EDSKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQKGDALRAKA 267 >gi|118445143|ref|YP_879240.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT] gi|118135599|gb|ABK62643.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT] Length = 247 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 70/165 (42%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + V++ ++E+++ E++ Y NK + E+ + + ++ ++ A E + +K Sbjct: 79 ALTQLSVNKVLSQVELTDKEVEDYYNANKSNFVVGEMISAKHILVDTEELAKEVAEEIKN 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F A + S +LG F K + ++ F+L + G + + FGY Sbjct: 139 GMTFGDAATKYSTCPSKAQGGNLGKFGKGQMV-PEFEEAAFNL-EIGKVSEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + + SF EVK I + + K + L++ Sbjct: 197 LIQVEEKQEATEKSFDEVKDLIRTNLLQERQKVKYATTVEELKKK 241 >gi|209883242|ref|YP_002287099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] gi|209871438|gb|ACI91234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha carboxidovorans OM5] Length = 301 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 5/155 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + E K ++++ L+ YE+ ++ + ++ + EA LKKG F +LA Sbjct: 123 DNEGKAALTDEALKKVYEEASKQISGEQEVHARHILVETEDEAKAIVAELKKGADFAELA 182 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +++ K LG F+K+ + + + F+L + G + + FG+ I V + + Sbjct: 183 KKKSKDPGASDGGDLGYFTKDQMV-PEFSTAAFAL-ETGKISDPVKSQFGWHIIKVEDKR 240 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F++VK + + ++ V + + Sbjct: 241 ARKAPPFEQVKPQLEAFVIRKAQADYVAKLRSEAK 275 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 4/143 (2%) Query: 477 RKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 + EE + +++ E +A +V E K+G +F ++ K ++ Sbjct: 137 KVYEEASKQISGEQEVHARHILVETEDEAKAIVAEL-KKGADFAELAKKKSKDPGASDGG 195 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + + + F+ + P+++ + + KV + + ++ L Sbjct: 196 DLGYFTKDQMVPEFSTAAFALETGKI-SDPVKSQFGWHIIKVEDKRARKAPPFEQVKPQL 254 Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617 + + +A L+S+ V Sbjct: 255 EAFVIRKAQADYVAKLRSEAKVE 277 >gi|332883586|gb|EGK03867.1| hypothetical protein HMPREF9456_01408 [Dysgonomonas mossii DSM 22836] Length = 708 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 102/724 (14%), Positives = 216/724 (29%), Gaps = 128/724 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S + I L +L F++ + F +V + V + + Sbjct: 4 LQKIRSKSSLLIGVIALGLLA--FVLPWSEISSFINKSKDKAFTVDGEVVTTRQYQDRIA 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120 Q + + + + ++ + + + +V LD+ +GL + + Sbjct: 62 QW-EHFQKIMSGQNSLDENATLQIREMVYQQMVKEIILDKQAAQLGLNVTKEELNDMVTG 120 Query: 121 --------RSPLFHGK-DNKFSHDVFVSRLA-----REGINEKE------------YIDH 154 + P F +F + + E + +I + Sbjct: 121 PNVAPILHQIPFFVNPQTGQFERAALNQFIQTISQDDTNLPENQRAEIQARREIWTFIQN 180 Query: 155 YTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA---IADPSN 210 K + V G + P++ A S+ Y+V + + ++ Sbjct: 181 MMKYQRLEEKYSAIVAGIVIPTDTEAKSAFDDSKTQASISYVVQKYASIADSLVAKEVTD 240 Query: 211 AVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDE----------------L 253 + +++ K+N++ E ++ISY + DV ++ E L Sbjct: 241 KDIKALYDQRKNNFKLESELRKISYFVKDVVPSDEDYAAVEKEINAIHDKFVATDNPGLL 300 Query: 254 QAEYEKNK------------------------EKYFSPEIRTVEQLVFP----------- 278 EY N+ + PE +++ Sbjct: 301 VNEYSNNQYVDAFISVNTLPADMKEFAQAATIGQVNGPERNEQSYIMYKLVDRTSAADSV 360 Query: 279 -----------NQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 +Q A D +K GK F LA E + ++G ++ + Sbjct: 361 KLQMIPLPQGLDQATATHISDSLLNVIKGGKDFSALANELMPGSNGGNIGWATEMALAGA 420 Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ--MRITK 379 L F AK GD V + I V + VK + + K Sbjct: 421 GGDLIKKCFGAAK-GDVFNVSI-NGQTQIVRVEDKTNPVAK----VKIALIQMPVIVSDK 474 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 V L +F+A ++ ++ + A + + Q+ Sbjct: 475 TQNSVD---NELNQFVAENGNVQNFDNAALTKGYNI--ISNAVVSPSDMLLGQVAGSRQV 529 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + F + S L + + V E + EV +K + K Sbjct: 530 ISWAFN-NKVGSVKKFDNLTNKRIIAVVKNEIS-GDYMPVSEVSAMLKAELINDK----- 582 Query: 500 SSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 KA +++ + +K + + + + T N + N GY+ + V++ + Sbjct: 583 --KAEKIIADLKAKNLTSLDGYAQAIAGRVDTVNFVTFQTNNISGVGYEPLLNVYAKHGQ 640 Query: 559 MVK-CFPIENGLSYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + K P + V VT ++ + + + Q L+ + LK + +V Sbjct: 641 VNKLEAPKKGKSGVYVIDVTSKTENAATFDPAQSKQMIRQSNMYQLMSQAMLVLKEKMNV 700 Query: 617 TVHD 620 + Sbjct: 701 KDNR 704 >gi|152990310|ref|YP_001356032.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2] gi|151422171|dbj|BAF69675.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2] Length = 272 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292 + +K I++++ E +A Y+KN +K+ PE+ ++ ++KEA + LKK Sbjct: 102 MKKKYDSIKVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINELKKTPKNQL 161 Query: 293 GKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 +KFI+LA+ + S LG F K + +D+ FSL T + FGY Sbjct: 162 KQKFIELAKTKSVGPSGKRGGDLGFFKKGQMVKP-FSDAAFSLKPGTFTTKPVQTQFGYH 220 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 I +V KP+ T+ F ++K I Q+++ K E V+++ ++L+ Sbjct: 221 IIYVEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQKEAEKLK 263 Score = 38.4 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%) Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 F V G ++ ++E PA +++ +K K K E V Sbjct: 199 AAFSLKPGTFTTKPVQTQFGYHIIY-VEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQK 257 Query: 502 KANQL 506 +A +L Sbjct: 258 EAEKL 262 >gi|227484925|ref|ZP_03915241.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC 51172] gi|227237080|gb|EEI87095.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC 51172] Length = 248 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 5/156 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H+ + + ++D+L+ YE NKE + T ++ + +A++ ++ +K G F + Sbjct: 85 MHKIFEAVNPTDDDLKKYYEDNKELISPNKTYTASHILVDDIDKANKIYEEIKLGLDFKE 144 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ K S SLG+F K + D + SL + G+ + + FGY I + + Sbjct: 145 AAKKYSKDPSAASGGSLGTFPKGVMVK-EFQDGLDSL-EIGEISKPVKSQFGYHIIKLED 202 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I+ +F EVK+ + + K EK E K + Sbjct: 203 IQNEEPKAFDEVKEQVYQTYLMVKRQEKYLEKLKEI 238 >gi|311744939|ref|ZP_07718724.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1] gi|126577446|gb|EAZ81666.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1] Length = 702 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 56/374 (14%), Positives = 123/374 (32%), Gaps = 36/374 (9%) Query: 262 EKYFSPEIRTVEQLVFPNQ-----------KEADEAFQSLKKGKKFIQLAEEQGKS---L 307 ++Y ++F + +A+E LK G F A + G+ Sbjct: 340 DQYEGAARMRASHILFSTEGMDDAAKANVRAQAEEVLADLKGGGNFALAASQYGQDGTSQ 399 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + LG F K + A+++F+ +G ++ +G+ I V+ + + + Sbjct: 400 NGGDLGYFKKADFVEP-FAEAVFAAKSEGLINNLVETEYGFHIVEVTGMPLTTYTKLAVL 458 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 ++++ + + E + + ++ V+ +++ Sbjct: 459 EREL---VASDATRNEAFRMADSFAASSGNRNEFKENASTDGYRVLEASNVNATARNINN 515 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + A Q++ F + L D +Y+ + D +L +V T V+ Sbjct: 516 IQNA-----RQVIRWAFTEASEDEVSPVFEL-DNNYIVASLISKKEEGDVELADVRTQVE 569 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL-GASLLTTNQINRMDN--ENKFF 544 + K A ++ E K ++ ASL TT + + F Sbjct: 570 TQVRNEKKA--------AMIAEQLKGKATLEEMQSVYPDASLNTTPDLKLSASVIPGVGF 621 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLL 603 I +F PI + +V K+ + + G + + F LTQ + Sbjct: 622 APRAIGAIFGLQNSGDLTAPIREDVGVIVGKLNSKNPAGEIGDYTAFQRQLTQGAAQRST 681 Query: 604 DSVIAYLKSQYSVT 617 ++ L+ V Sbjct: 682 YQIMMALQELVGVK 695 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 72/225 (32%), Gaps = 18/225 (8%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 S + V +G +++ + + ++ Q+ G + ++ ++ Sbjct: 40 NSNQNIVGEIGGEEISYEEYSAKVEEFKMSFQQRTGR--TPSEPEMFSVREQAWQAMIVE 97 Query: 97 ATLDQFIEDIGLEADHGRVWGEIA--------RSPLFHGKDNKFSHDV---FVSRLAREG 145 + E +GLE + + R L + + +F F+ L Sbjct: 98 NVFQEEYEKLGLEISDAELVDMVQGKNIVAEIRQQLINPQTGQFDKTQLVSFLQSLETAD 157 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----RSVDYIVLNNRH 201 ++ + +M + + + + + S +F +E V ++ + Sbjct: 158 PTQQAFWAQQEQMFAESRLRIKYDNMLATSEYTTTDEAKFEYEAANTVADVSHLFVPYYV 217 Query: 202 VPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + + S + + + ++K + I Y+ F + + Sbjct: 218 IADSAVEVSESEMKSYLSEHKSKFETGSSANIEYVSFSIQPSSQD 262 >gi|320354702|ref|YP_004196041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus propionicus DSM 2032] gi|320123204|gb|ADW18750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus propionicus DSM 2032] Length = 327 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 51/395 (12%), Positives = 124/395 (31%), Gaps = 82/395 (20%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 ++I ++ + + +S A + +V V + S + ++++ Sbjct: 1 MASRILFFLVSICLVF--VSAASNANVVDRSVAIVNNDTITLSEVNELGRSFFKKVTEET 58 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 E + ++D L+ L Q + +G++ V + R +NK Sbjct: 59 PADRLPEALQQA--RNTVIDKLIDKKLLVQEAKKLGIQVSDQEVDNALQRV----LANNK 112 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 + + F L G+ EK+Y + + + ++ Sbjct: 113 ATMEQFHKELLAMGMTEKQYKEELRDQILSSKLIN------------------------- 147 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP----EYKRISYILFDVHEKEKKIE 247 V + ++++ Y E + Sbjct: 148 --------HEVRTKVVIPEEKILEYYQSN---YTRQVGGGELHLQQIGCTWGEPLANGVV 196 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--- 304 S D+ +++ +A++ K G F +LA++ Sbjct: 197 PSQDD--------------------------AKEKIRKAYEKAKDGDDFNELAKKYSDLP 230 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS- 363 + LG+F + ++ ++ L K G+ +PV+ GY + + + TVS Sbjct: 231 SAEDGGDLGTFQLHELA-PAMQQAVAQL-KSGEISPVVQIDNGYHFFKLVSSQGGATVSK 288 Query: 364 --FQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 ++ VK++I ++ + K+ K + + Sbjct: 289 ADYEAVKEEIRERLYKQAMEARFKDWVKSIRDKAY 323 >gi|317050625|ref|YP_004111741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum indicum S5] gi|316945709|gb|ADU65185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum indicum S5] Length = 280 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 26/263 (9%) Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 L+ +G G S+ +L ++ + ++ + + SN Sbjct: 6 LRLCLAAGLTLGTLAGVALASDTVLATVEKRQITQQDLNRAIQSLPDELRAQVRSNPEFK 65 Query: 215 Q------------WFEKYKDNYRAPE---------YKRISYILFDVHEKEKKIEISNDEL 253 + E + N++ E + + F + + +S +L Sbjct: 66 AQLLDELVRQEMVYHEAQRQNFQENEVVRNRLKLLERELMINAFLEEYLSRNVSVSEQDL 125 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-- 311 + YE+NK ++ + ++ ++++A E + + G+ F QLA E Sbjct: 126 KEFYERNKARFVTQATVAASHILLEDEQKAREVLRRARAGENFGQLAREHSLDPGSARQE 185 Query: 312 --LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 +G F + D+ F+ A+ G ++ FGY I V PS TVS E + Sbjct: 186 GFIGEFYRGQGLVKEFEDAAFA-AEVGVHPELVRTEFGYHIIKVHEKNPSRTVSLDEARD 244 Query: 370 DIANQMRITKASEKVKEDYKRLE 392 + + K ++ + + LE Sbjct: 245 RVTEIIAEEKQNQALMRLIQELE 267 >gi|295401098|ref|ZP_06811072.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus thermoglucosidasius C56-YS93] gi|312112126|ref|YP_003990442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. Y4.1MC1] gi|294976891|gb|EFG52495.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus thermoglucosidasius C56-YS93] gi|311217227|gb|ADP75831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp. Y4.1MC1] Length = 278 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 78/194 (40%), Gaps = 26/194 (13%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY---------RAPEYK---RISYILFDVHEKEKKIEIS 249 + ++ + + E KD Y + E + L + I+++ Sbjct: 62 LSKKYKVTDKEIDKEIENLKDMYGVQYDLVVQQNGEKAIRDMVKLDLLRQKAAMEDIKVT 121 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308 + EL+ YE K K ++ ++K A E L KG+ F +LA++ + Sbjct: 122 DKELKDYYENYKPKI------RASHILVKDEKTAKEIKAKLDKGEDFAKLAKQYSQDPGS 175 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG F + + D+ + L K G+ + + +GY I V++ + F Sbjct: 176 ASNGGDLGWFGQGKMVK-EFEDAAYKL-KVGEISDPVKTEYGYHIIKVTDKEEK--KPFN 231 Query: 366 EVKKDIANQMRITK 379 E+K++I +++ +K Sbjct: 232 EMKEEIEFEVKRSK 245 >gi|225181417|ref|ZP_03734860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter alkaliphilus AHT 1] gi|225167815|gb|EEG76623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter alkaliphilus AHT 1] Length = 319 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 119/369 (32%), Gaps = 92/369 (24%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 S ++TV +V +++ + ++ L + ++ ++ SE R + ++ +IL +V Sbjct: 27 GGNSAANTVANVNGEEITRAELD-AYMNVLALFMPELQQMLESEELRGM-IEGEILSVMV 84 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 ++Q +D+GL + E F S + F L INE++ Sbjct: 85 QNVVVEQAAKDLGLSVSDEELQAE---YEEFRAMMGGMSDEDFQEVLKEYDINEEDLKQS 141 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 + + F D ++ + Sbjct: 142 LRADVYVDKLEQHFAS------------------------------------DITDEDIQ 165 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + ++ R P + Sbjct: 166 AFIDENPSFGRQPATLEL----------------------------------------SH 185 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADS----- 328 ++F ++EA EA + + G+ F LA E + + + G + Y+ D D+ Sbjct: 186 ILFDEEEEALEARERILAGEDFGDLAVELSQDPTAQNEGHPGYRGYLGDNIAEDTQDFWS 245 Query: 329 -----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 ++++ G+ +P + G+ + + P +SF+E ++D + + ++ Sbjct: 246 DFMEGANNISEDGEVSPPVETQGGWHLIKLHARTPEVELSFEEAREDAFVALSVDLMNQH 305 Query: 384 VKEDYKRLE 392 + + E Sbjct: 306 LDGVFAAAE 314 >gi|188580734|ref|YP_001924179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium populi BJ001] gi|179344232|gb|ACB79644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium populi BJ001] Length = 300 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 79/185 (42%), Gaps = 12/185 (6%) Query: 226 APE-YKRISYI-----LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +PE ++++Y L D E+E K ++ + +A YE+ + E ++ + Sbjct: 108 SPEFKRKLAYFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVHARHILVES 167 Query: 280 QKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + EA + +K G+ F ++A ++ G LG F++E + AD+ F + Sbjct: 168 EDEAKKIAARIKGGEDFAKIAAEVSKDPGSKTEGGDLGWFTQERMVKP-FADAAFKMT-P 225 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + + FG+ + V + +F E+K+ I + + + + + + Sbjct: 226 GQVSDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVER 285 Query: 396 ALGTS 400 + ++ Sbjct: 286 SGSST 290 Score = 40.7 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%) Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDI 520 K P + L E + K++K EEV ++ + + K G++F I Sbjct: 134 KAVTPEAAKALYE------QTVKSMKPEEEVHARHILVESEDEAKKIAARIKGGEDFAKI 187 Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + + + + + F V P++ + V +V Sbjct: 188 AAEVSKDPGSKTEGGDLGWFTQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHVLRVEEK 246 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + PV D+ + Q + + I L+ V Sbjct: 247 RTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284 >gi|251778113|ref|ZP_04821033.1| foldase protein PrsA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082428|gb|EES48318.1| foldase protein PrsA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 247 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 73/165 (44%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + +++ + +++++++ Y+ N + +P + + ++ ++EA + ++ Sbjct: 79 ALTQLAINKVLADVTVTDEDVKKYYDDNASMFVNPPTVSAKHILVKTEEEATSIKEEIEN 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F + A++ S SLG+F K + F ++ G + + FGY Sbjct: 139 GLAFEEAAKKYSTCPSKEQGGSLGNFGKGAMV-PEFEKVAFE-SEVGIVSEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + S TV F++VK + Q+ + K E K+L + Sbjct: 197 LILVEDKAESTTVPFEQVKDAVLRQLINERQQNKYLEMIKQLSDK 241 >gi|225012326|ref|ZP_03702762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium MS024-2A] gi|225003303|gb|EEG41277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium MS024-2A] Length = 704 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 97/737 (13%), Positives = 220/737 (29%), Gaps = 154/737 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 L IR+ R+ + + + F+I G+ S + V + +V F Sbjct: 4 LGKIRQ--RSIFLILVIGMALFAFVISGVFGSNSASTGPTDPVAVINDDEVDIDFFRQ-- 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + ++ N +SV L + + + DQ E++G++A ++ I+ Sbjct: 60 ------MVEQTERTYNYSTLQSVNL---VWNQALRNTIFDQQFEELGIDAGKDQLEQIIS 110 Query: 121 RS------PLFHGKDNKFSHDVFVSRL--------------------------------- 141 P F + F VF + Sbjct: 111 SDESVISNPSFQNEAGFFDFGVFTDFIAQMKVENPVSYENWKIQEQSIIGVAKQRIYLDL 170 Query: 142 --AREGINEKEYIDHYT---KMLSRTDVVGMF---------VGGMRPSNLLLDQAKRFYF 187 + GI E E Y ++ V F V N + + F Sbjct: 171 IKSSSGITEAEAKADYHSKNDNINIQYVQIPFDVISDSLVNVSDAEVKNYIKEHEADFKR 230 Query: 188 EN-RSVDYIVLNNR---------------------HVPAIADPSN--------AVLTQWF 217 E+ R++ Y++ + ++ ++ + + Sbjct: 231 ESSRNIQYVLFDEAPTEDDLSSIRLRLDALKEERVAYNDVSKLTDTLEGFRSTKNIADFI 290 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-------KYFSPEIR 270 ++Y + Y+ + + K+ S E+ Y + Sbjct: 291 DEYSEESFDSVYRARGEFNNEYADILFKL--SKGEVFGPYRDRGDFKISRLIDRKVNASL 348 Query: 271 TVEQLVFP-------------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSLS---D 309 ++ + EA + + F L E + Sbjct: 349 RASHILIAFNGATRAPSEVSRTKAEAKSEANRVYKMARRASSDFEALVREYSDGPTKTRG 408 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFT--PVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 LG F + + A +F+ K ++ FG+ I V++ + Sbjct: 409 GDLGFFREGDM-----AQELFNFTNKNKVGNIGLVETEFGFHIVKVTDKD-----DLALI 458 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 +A + K + +V + + E + I+ + K V + + +++ G Sbjct: 459 ADVVAAAVPSDKTANEVFRNATQFEMDSNEDGDFNAIAEKSKYVVRPVKQITSLEENLPG 518 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + + ++ F +D + ++ G Y VQ+ + ++EV T V+ Sbjct: 519 -----LFQQRNIVRWTFEEDTKVGDIKRFSIASGGYAVVQLTAKVKEGLADIDEVGTQVR 573 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K K AE L+ + K+ + +N + T + IN+ + G + Sbjct: 574 KILTNKKKAE--------LIKKQFKDKTTLDALAENEEFEIETASAINQRNPSIVGAGNE 625 Query: 548 G--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605 + F+ + Y V + + +++ + + ++ + ++ Sbjct: 626 PYIVGVAFAMEEGTLSNLITGEYGVYKVLLMKKNTAEELEDYTAYTEQMMTELSARITEN 685 Query: 606 VIAYLKSQYSVTVHDNL 622 V L+S S+ + L Sbjct: 686 VFKALESVASIDDNRAL 702 >gi|182419506|ref|ZP_02950757.1| foldase protein PrsA [Clostridium butyricum 5521] gi|237666290|ref|ZP_04526277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376636|gb|EDT74209.1| foldase protein PrsA [Clostridium butyricum 5521] gi|237658380|gb|EEP55933.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 247 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 71/161 (44%), Gaps = 5/161 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 +++ + +++++ + Y++NK+ + P + ++ ++EA++ + + G F Sbjct: 83 MAMNKALADVTVTDEDAKKYYDENKDAFSVPPTVSARHILVKTEEEANKVKEEINGGLSF 142 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A + S +LG FSK + + F A+ G T + FGY + V Sbjct: 143 ADAAMKYSSCPSKEQGGNLGEFSKGMMV-PEFEKASFE-AEIGVLTEPVKTQFGYHLIIV 200 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + SF+EVK + N++ +K + +L+E Sbjct: 201 DSKNEGAVKSFEEVKDSVVNELLKRNQHKKYDDLMNQLQEK 241 >gi|188589997|ref|YP_001922502.1| foldase protein PrsA [Clostridium botulinum E3 str. Alaska E43] gi|188500278|gb|ACD53414.1| foldase protein PrsA [Clostridium botulinum E3 str. Alaska E43] Length = 247 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 72/165 (43%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + +++ + +++++++ Y+ N + +P + + ++ ++EA + + Sbjct: 79 ALTQLAINKVLADVTVTDEDVKKYYDDNANMFINPPTVSAKHILVKTEEEATSIKEEIAN 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F + A++ S SLG+F K + F ++ G + + FGY Sbjct: 139 GLAFEEAAKKYSTCPSKEQGGSLGNFGKGAMV-PEFEKVAFE-SEVGIVSEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + S TV F++VK + Q+ + K E K+L + Sbjct: 197 LILVEDKAESTTVPFEQVKDAVLRQLINERQQNKYLEMIKQLSDK 241 >gi|291166314|gb|EFE28360.1| peptidylprolyl isomerase Pr [Filifactor alocis ATCC 35896] Length = 365 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 60/375 (16%), Positives = 126/375 (33%), Gaps = 82/375 (21%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K+ V+ L G S G V SV QK+ + + + G Sbjct: 6 KVIASVVSATLLFAGCS------IGGDAVASVNGQKIGKDVYEKTLGLYSPSYEMQFGPD 59 Query: 75 VNSERARS-----VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + S ++IL+ +++ + Q L + + D Sbjct: 60 IWNTEIESGVTFSQKFQEEILEKMINDEIILQDAAKKELTVSVEEINTQFDELK--KSID 117 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 S + F S L GI+++ + K ++ + Sbjct: 118 ---SQEQFKSILESNGIDDEFLKEQVKKDMTVKKYYDTLMQ------------------- 155 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + + ++++++ D + + + S+ILF + +K E+S Sbjct: 156 ---------------ENEVKEDEVRKYYDEHIDEFTSS-QVKASHILFAKKDFDKNEELS 199 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308 +E+ ++ A++ K G+ F LA + Sbjct: 200 KEEV-----------------------AKKKELAEKVLGMAKNGQNFADLAMKYSDDTGS 236 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSF 364 LG F K + +D+ FS+ K+GD + ++ FG+ I + + K + F Sbjct: 237 AKNGGDLGYFDKNTMVK-EFSDAAFSM-KQGDISDSIVETEFGFHIIKLFDKKENVEK-F 293 Query: 365 QEVKKDIANQMRITK 379 ++VK+ IA+ ++ K Sbjct: 294 EDVKQSIASNLQYQK 308 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 99/266 (37%), Gaps = 21/266 (7%) Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA-------GKDVKGKEVAAI 433 S+K +E+ LE+ + + + +++E VS++ F ++ + + Sbjct: 72 SQKFQEEI--LEKMINDEIILQDAAKKELTVSVEEINTQFDELKKSIDSQEQFKSILESN 129 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTD----VK 487 ++ L KD + K + + + ++++ + +V K Sbjct: 130 GIDDEFLKEQVKKDMTVKKYYDTLMQENEVKEDEVRKYYDEHIDEFTSSQVKASHILFAK 189 Query: 488 KDW-KTVKTAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDN-ENK 542 KD+ K + ++E +K +L + K G+NF D+ + + + Sbjct: 190 KDFDKNEELSKEEVAKKKELAEKVLGMAKNGQNFADLAMKYSDDTGSAKNGGDLGYFDKN 249 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602 + FS + +E + + K+ + K V++ + + + Sbjct: 250 TMVKEFSDAAFSMKQGDISDSIVETEFGFHIIKLFDKK-ENVEKFEDVKQSIASNLQYQK 308 Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYLD 628 +SVI LK V ++++I++ + Sbjct: 309 YESVIDGLKKAAKVKKNEDVIKKVRE 334 >gi|28209963|ref|NP_780907.1| peptidylprolyl isomerase [Clostridium tetani E88] gi|46396876|sp|Q899I2|PRSA_CLOTE RecName: Full=Foldase protein prsA; Flags: Precursor gi|28202398|gb|AAO34844.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani E88] Length = 339 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 51/399 (12%), Positives = 127/399 (31%), Gaps = 87/399 (21%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--S 59 ++ ++ ++ + A +F ++ + + + S V VG++ + Sbjct: 1 MKHLKNNTKKFTALLFALLFSMSIAGCNMIEKTPEAIEKSPVAKVGKKTITRGELDTYPI 60 Query: 60 WKQELGMISQKIGFVV--NSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++L + ++ G + N+E + ++L+ ++ + + E++ D+ +V Sbjct: 61 LAEQLTKLKEQFGGDLSKNAEIKDQLIQFKSQVLEQMIQEEIVFEKSEELK--VDNAKVE 118 Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 E+ F + + + D + L + G E+ + + +V V Sbjct: 119 KEVEKNLKNFMDQGFQGNKDKYKEDLKKMGTTEESIKRFFKAQVITEEVSKQVV------ 172 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + + +E+ K + Sbjct: 173 ----------------------------KDVKVDDNTAKKHYEESKYTFTV--------- 195 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 NK + + + ++ ++EA + L KG+ Sbjct: 196 ------------------------NKPTFHA------QHVLVKTEEEAKKVKARLDKGED 225 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 ++A+E S LG + AD+I L KG+ + + FGY + Sbjct: 226 IKKIAKELSIDPSAKENSGDLGKAPYSSMVKP-FADAIVKL-NKGEISQPVKSQFGYHVI 283 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + F VK+ I + T+ + E ++ Sbjct: 284 KLIDKDEVTFKDFNSVKEQIKKDLLETEKRKVFNEKIEQ 322 >gi|163867494|ref|YP_001608693.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP 105476] gi|161017140|emb|CAK00698.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP 105476] Length = 317 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 12/216 (5%) Query: 182 AKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 RF E R + + L+ + + A + T+ + K A + L+ Sbjct: 76 LARFPDEQRRIMVLKAYLDMQALAKAARSKDLDKTEAYNKR----MAVMRDNVLQQLYFK 131 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K IS+ +L+ Y++ + ++ +KEA+ + L KG+ F ++ Sbjct: 132 QAIVDK--ISDTDLEDLYKQEIAALPKEDEVKARHILVKTRKEAEAIIKHLNKGENFEEI 189 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ S LG FS + D+ F L + FG+ I + + Sbjct: 190 AKKSSTDGSAAVGGDLGYFSHGQMVKP-FEDAAFGLKVGEYTKQPVESPFGWHIIKLEDR 248 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +F EVK+ + Q+ + E + + +++ Sbjct: 249 RVKQPPTFDEVKEMLRTQLIKKRYQELIVDLRSKID 284 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 6/140 (4%) Query: 483 LTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 ++ K + +A ++ +K G+NF +I K + Sbjct: 148 KQEIAALPKEDEVKARHILVKTRKEAEAIIKHLNK-GENFEEIAKKSSTDGSAAVGGDLG 206 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 + F V P+E+ + + K+ + +V D+ L Sbjct: 207 YFSHGQMVKPFEDAAFGLKVGEYTKQPVESPFGWHIIKLEDRRVKQPPTFDEVKEMLRTQ 266 Query: 598 MNKDLLDSVIAYLKSQYSVT 617 + K +I L+S+ V Sbjct: 267 LIKKRYQELIVDLRSKIDVK 286 >gi|332981378|ref|YP_004462819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella australiensis 50-1 BON] gi|332699056|gb|AEE95997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella australiensis 50-1 BON] Length = 350 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 55/406 (13%), Positives = 128/406 (31%), Gaps = 97/406 (23%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINSWKQELGMI 67 + +V L ++ + F+ G S V V K+ + ++ + + + Sbjct: 2 KRFVRMTALAMVAI-FIFAGCSLVTVDPEKEKQLPVAEVNGDKILKADYVKQYDAYINAV 60 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 Q+ G + TL+ + Sbjct: 61 EQQYG---------------------IDKKTLETSTD----------------------- 76 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + LA+ D ++++ V + + Sbjct: 77 ---------YADTLAQMR------EDIVEGLITQKLVDQQAKKNNIALTDDDKKQVKDQL 121 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + Y + + A L Q + + + I Sbjct: 122 QQLKDAYGEEAFADMLKQQQMTEAELEQLLQGDAVQQKL------------FDQLTAGIT 169 Query: 248 ISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQK-------------------EADEAF 287 ++++E++ Y++NK+ ++ PE+ V ++ + EA++ Sbjct: 170 VTDEEVKKYYDENKDTEFTDPEMVKVSHILISIPEDKYSADETTKKTEYDKIKPEAEQVL 229 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K G F +L ++ G +FS+E + + ++ F+L KGD + ++ Sbjct: 230 AKAKAGDDFAELVKQYSDDAGTKDQGGTLTFSREDQIEPAFIEASFALKNKGDISGLVQT 289 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 S+GY I + PS +F+E K++I + + K ++K+ + Sbjct: 290 SYGYHIIRLEEKIPSKVHTFEEKKQEIHDTLLQQKKNDKITALIEE 335 >gi|303241900|ref|ZP_07328394.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio cellulolyticus CD2] gi|302590574|gb|EFL60328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio cellulolyticus CD2] Length = 495 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 21/181 (11%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK----------------EAD 284 + + S + ++ YE NK Y PE + ++F ++ +A+ Sbjct: 317 DLVTNVNASEETIKKYYEDNKSMYIQPEQVRAKHILFSTKEITGEDYDAQKKAEIKKKAE 376 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E +K G F +L + + + +FSK + + FS+ K G+ + + Sbjct: 377 EVLAQIKAGADFDELMNKYTEDPGTANYPNGYTFSKGEMV-QEFEEKSFSM-KVGEISDL 434 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + FGY I + P + +VK I ++ + + + + A+ ++ Sbjct: 435 VETQFGYHIIKLEEKIPETQLKLDDVKDSIKAELDPQEKQNYFDKLLVQFKAESAIVNTL 494 Query: 402 D 402 + Sbjct: 495 E 495 >gi|154502709|ref|ZP_02039769.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149] gi|153796592|gb|EDN79012.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 + E K ++ ++++ YE++K+++ E + ++ ++++ D +++ G+ Sbjct: 83 MTMREVMKDAVVTEEDVKNYYEEHKQQFTKGETVRAKHILTDSKEKCDAILAAIQSGETS 142 Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A+E+ S LG F K + D+ F+ A+ G + FGY + Sbjct: 143 FEDAAKEKSTCPSGAKGGDLGEFGKGQMVK-EFEDAAFT-AEIGAIVGPVQTQFGYHLIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V K + F+EVK I NQ+ + ++ + K L E Sbjct: 201 VEEKKDAAVADFEEVKNSIRNQLLQQRQNKVYSDKVKELREK 242 >gi|300024688|ref|YP_003757299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] gi|299526509|gb|ADJ24978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] Length = 311 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 6/145 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +S+ + + Y+ + E + ++ +++A E L KG F QLA+E K Sbjct: 117 SVSDADARKIYDDQVKLLKPEEEVSARHILVETEEQAKELKAKLDKGADFAQLAKENSKD 176 Query: 307 LS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +LG F + + +F L KKG+ + + FG+ + + + + Sbjct: 177 PGSKDDGGNLGYFGHGQMV-PQFEEVVFKL-KKGEVSAPVKTQFGWHLVKLEDSRTKQPP 234 Query: 363 SFQEVKKDIANQMRITKASEKVKED 387 +F+ VK IA + + KA + E Sbjct: 235 AFEIVKDRIAQSLLLQKAQKTATEL 259 >gi|260061697|ref|YP_003194777.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata HTCC2501] gi|88785829|gb|EAR16998.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata HTCC2501] Length = 706 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 95/632 (15%), Positives = 205/632 (32%), Gaps = 68/632 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 LE IRK RT V + + + F++ + S S V V + + F Sbjct: 4 LENIRK--RTTVLILIIGMALFAFVVSDVLTRGGFGSDKIGSAVGEVNGEPISIDDF--- 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 + G +A S + I D V A L Q E +G++ ++ I Sbjct: 59 ----RARMEAAEGSF--GPQATSTQIVNSIWDQTVRTAILGQEFEKLGIDIQQDQIMDLI 112 Query: 120 A------RSPLFHGKDNKFSHDVFVSRLAREGIN-EKEY------IDHYTKMLSRTDVVG 166 ++P F + F D F + + +N ++Y D + Sbjct: 113 RNNPNFTQNPQFQDANGNFDEDAFRNFITELRVNQPQQYQMWLQTEDALIQAAKEQTYFD 172 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225 + G+ + + R + + Y+ + +P S + + ++ ++ Sbjct: 173 LIRAGVGATLKEGELDYRLANDKVDIRYVRVPYTSIPDSTISVSKEEIAAYIKENPSEFK 232 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 + + Y+ F+ + L+A E +E+Y TV F N + Sbjct: 233 QEAARDLRYVYFEEKASAADETAIEESLRALLED-EEEYREDLDSTVVNPGFLNTDDMLA 291 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 K+ + +K +P AD++ +L + G+ Sbjct: 292 FLDR-NSDTKYDTI--------------YRAKSELP-TQWADTLMAL-ETGETFGPYRDG 334 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + ++ + + K + VK ++ + +E+ R +E Sbjct: 335 NAFKVSRMMDRKENG-----SVKA--SHILISYAGAERANPSVTRTQEEARERAEELLAE 387 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVALPDG--S 462 R L + Y ++ ++ F + TV L + Sbjct: 388 ARRSGAQF-AQLARDNSDGPSAPNGGDLGYFQEGVMTDAFNDFAFGNAVGTVGLVETEFG 446 Query: 463 YMWVQIKESIPARDRKLEEVL-TDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 Y V++ + + V + + + + +T + ++A L + S + FR I Sbjct: 447 YHVVKVDDKR-------DVVRLATLTRAIEPSEETINSLFTEATSLEMAVSDSPETFRSI 499 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 + G + N++ MD G + F+ E+ + Y + ++T Sbjct: 500 AEEKGYQVRPVNKVRTMDENLPGLGAQRRIVQWAFNSDTEIGDIRRFDVAGGYAIVQLTG 559 Query: 579 S-KVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 + K G + +D + L ++ K ++A Sbjct: 560 TYKEGTMSVEDASVQVLPKLRKKAKAQQILAA 591 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 46/337 (13%), Positives = 113/337 (33%), Gaps = 29/337 (8%) Query: 292 KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G +F QLA + + + LG F + + D + D F G ++ FGY Sbjct: 391 SGAQFAQLARDNSDGPSAPNGGDLGYFQEGVMTD-AFNDFAFG-NAVGTV-GLVETEFGY 447 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRR 407 + V + + V + + I + + + LE ++ + I+ Sbjct: 448 HVVKVDDKRD--VVRLATLTRAIEP---SEETINSLFTEATSLEMAVSDSPETFRSIAEE 502 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + + V + + + + +++ F D + + G Y VQ Sbjct: 503 KGYQVRPVNKVR-----TMDENLPGLGAQRRIVQWAFNSDTEIGDIRRFDVA-GGYAIVQ 556 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + + +E+ V + +KA Q++ + +GK+ +I + + Sbjct: 557 LTGTYKEGTMSVEDASVQVLPKLRK-------KAKAQQILA--ANQGKSIEEIASSNAVA 607 Query: 528 LLTTNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKVT-NSKVGPVQ 585 + T +N G + + + + + IE +VT ++ + Sbjct: 608 ISTATALNVKSPTIPGAGREPLVVGIATVMDQGATSDLIEGETGVFKLEVTGKTEAPELD 667 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 + + L + + V L+ + + + ++ Sbjct: 668 NYAPYANTLRSSLGPRVAAEVYQALRDKAEIEDNRSI 704 >gi|218661050|ref|ZP_03516980.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli IE4771] Length = 293 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + ++D +L + D ++ Sbjct: 36 EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAITEKLDQTDE------ 89 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ L + + K+ ++ +S DE++A Y+K E ++ Sbjct: 90 ------FKKRMQYLSDRELHNAYFKKHVVDTVSPDEIKARYDKEVAALPKQEEVHARHIL 143 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 + EA E + L GK F +LA+E+ + LG FS+ + D+ F+L Sbjct: 144 VKTEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 K + FGY + V + + + F +V+ + + K Sbjct: 203 KGTYSKTPVKTDFGYHVIKVEDKRDAPPPPFDQVQDQVRQLVMRDK 248 >gi|310828352|ref|YP_003960709.1| foldase protein PrsA [Eubacterium limosum KIST612] gi|308740086|gb|ADO37746.1| foldase protein PrsA [Eubacterium limosum KIST612] Length = 253 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 76/158 (48%), Gaps = 7/158 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQ 298 + K +E+S++E++ Y++N +++ +P+ ++ P++++A + + +K GK F + Sbjct: 86 AKFMKNVEVSDEEVKKFYDENPKQFIAPDSIRASHILLPSEQQAIDIIKEIKDGGKTFEE 145 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVS 354 A+ S L FSK + ++ F++ K G+ + + FG+ I V+ Sbjct: 146 AAKAYSVCPSREQGGDLSYFSKGKMV-PQFENAAFAM-KVGEMSDEPVKTDFGWHIIKVT 203 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + K S T+ + VK+ + K + + L+ Sbjct: 204 DSKTSETIPYDVVKESARQYLLEQKQNRAFLDRVDELK 241 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 +A ++ E GK F + K + + F+ V Sbjct: 126 EQQAIDIIKEIKDGGKTFEEAAKAYSVCPSREQGGDLSYFSKGKMVPQFENAAFAMKVGE 185 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 + P++ + + KVT+SK K+ YL + + LK +Y Sbjct: 186 MSDEPVKTDFGWHIIKVTDSKTSETIPYDVVKESARQYLLEQKQNRAFLDRVDELKKEYD 245 Query: 616 VTV 618 V V Sbjct: 246 VDV 248 >gi|209551115|ref|YP_002283032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536871|gb|ACI56806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 293 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 17/234 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + ++D +L D ++ Sbjct: 36 EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAAAEKLDQTDE------ 89 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ L + + K+ ++ ++ +E++A Y+K E ++ Sbjct: 90 ------FKKRMQYLTDRELHNAYFKKHVVDIVTPEEVKARYDKEVAALPKQEEVHARHIL 143 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 + EA + + L GK F +LA+E+ + LG FS+ + D+ F+L Sbjct: 144 VKTEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 K + FGY + V + + + F++V+ + + K E + + Sbjct: 203 KGTYSKTPVKTDFGYHVIKVEDKRDAPPPPFEQVQDQVRQLVMRDKYLELLNKA 256 Score = 37.7 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 65/182 (35%), Gaps = 21/182 (11%) Query: 365 QEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 +EVK ++ E+V +++ K + + L G E+++ K + Sbjct: 118 EEVKARYDKEVAALPKQEEVHARHILVKTEDEAKDIIKQLDAGKDFAELAKE-KSTDPNK 176 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 G +G+ V ++ F + V D Y +++++ A Sbjct: 177 SEGGDLGYFSRGRMV------KEFEDAAFALEKGTYSKTPVKT-DFGYHVIKVEDKRDAP 229 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEV-SSKAN---QLVLEYSKEGKNFRDIGKNLGASLLTT 531 E+V V++ K E + +KA+ ++ E ++G + + G+ + Sbjct: 230 PPPFEQVQDQVRQLVMRDKYLELLNKAKASAKIEISDETLRKGYDQANKQPEPGSEPVAP 289 Query: 532 NQ 533 Sbjct: 290 AP 291 >gi|110801593|ref|YP_697584.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Clostridium perfringens SM101] gi|110682094|gb|ABG85464.1| PPIC-type PPIASE domain protein [Clostridium perfringens SM101] Length = 248 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295 + + + +++DE + YE++KE + E T + ++ ++++A + + + G Sbjct: 83 MVMKKTLSSVTVTDDEAKDFYEEHKENFVELETVTAKHILVASEEDAKKVEEEIASGSIT 142 Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A + S +LGSFSK + ++ F+L + G + + FGY + Sbjct: 143 FEDAANKYSSCPSKEQGGNLGSFSKGMMV-PEFEEAAFNL-ELGVVSAPVKTQFGYHLIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + + T +F++VK+ + N + + +K E K L E Sbjct: 201 VEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREK 242 Score = 37.7 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 13/158 (8%) Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKV---KEDYKRLEEFLALGT-SMDEISRREKIV 411 + F E K+ ++ A + +ED K++EE +A G+ + ++ + + Sbjct: 94 VTDDEAKDFYEEHKENFVELETVTAKHILVASEEDAKKVEEEIASGSITFEDAANKYS-- 151 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 P + G + +P E+ F + L Y +++++ Sbjct: 152 --SCPSKEQGGNLGSFSKGMMVPEFEEAAFNL-----ELGVVSAPVKTQFGYHLIKVEDK 204 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 A+ + E+V V + ++ +L + Sbjct: 205 TEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREK 242 >gi|49475012|ref|YP_033053.1| peptidyl-prolyl cis-trans isomerase [Bartonella henselae str. Houston-1] gi|49237817|emb|CAF27012.1| Peptidyl-prolyl cis-trans isomerase [Bartonella henselae str. Houston-1] Length = 317 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 16/237 (6%) Query: 167 MFVGGMRPSNLLLDQAK--------RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + G + LD+ RF E R + + + + + A + + + Sbjct: 53 AVIDGKEVTAGQLDELALEINPGLARFSDEQRRITVL----KAYLDMLALAKAAIKEGID 108 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 K + + R + + ++ +IS+ +L+ Y+K + ++ Sbjct: 109 KSETYNKRMAVMRDNVLQQLYFKQTVVDQISDADLETLYKKEVAALPKEDEVKARHILVK 168 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 +KEA+ + L KG+ F ++A++ S LG FS + D+ F L Sbjct: 169 TKKEAEAIIKRLNKGESFEEIAKKNSTDGSAAVGGDLGYFSHGQMVKP-FEDAAFGLKVG 227 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FG+ I + + + F +VK+ + Q+ + + + + K+++ Sbjct: 228 EYTKKPVESPFGWHIIKIEDRRVKQPPVFDDVKEMLRTQLIKERYQKLIADLRKKID 284 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 6/154 (3%) Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEE----VSSKANQLVLEYSKEGKNFRDIGKN 523 + + A L +V K + + K + +++ +G++F +I K Sbjct: 135 VDQISDADLETL--YKKEVAALPKEDEVKARHILVKTKKEAEAIIKRLNKGESFEEIAKK 192 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 + + F V P+E+ + + K+ + +V Sbjct: 193 NSTDGSAAVGGDLGYFSHGQMVKPFEDAAFGLKVGEYTKKPVESPFGWHIIKIEDRRVKQ 252 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 D L + K+ +IA L+ + V Sbjct: 253 PPVFDDVKEMLRTQLIKERYQKLIADLRKKIDVK 286 >gi|307718834|ref|YP_003874366.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM 6192] gi|306532559|gb|ADN02093.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM 6192] Length = 501 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 81/493 (16%), Positives = 152/493 (30%), Gaps = 86/493 (17%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPF------SSFINSWKQELG 65 W + I ++ V F+ G+ A V + F ++ Sbjct: 21 WGSIIVFAIIVVSFIFVGVPSAGVGSQTKIVYGKYAGMPVEQLPQMPYTYFQREIERLSD 80 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 I Q+ + + + + +N V + +D GL + + R Sbjct: 81 QIRQQ-NVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDAGLHVSSKALDRAVMRE--- 136 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + +D +FS D +++ E +++ Y + + VV V G S Sbjct: 137 YTEDGEFSEDRYLATPPAERYQIRKF---YRETILSQQVVNDLVFGSVVSEAERSFIAGM 193 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R + Y+V + P + E + D +R E RI+ Sbjct: 194 NYPQRKIRYLVYDFDEYP------ETEAKAYGEAHPDLFRTMELSRIT------------ 235 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQLAEEQG 304 + +Q EA++ +Q+ LK+ ++F +LA Sbjct: 236 ------------------------------ITSSQIEAEKLYQTLLKEPERFEELARASS 265 Query: 305 KSLS---DISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357 + + +G + D+ D +IFS+ KKGD V G +VI Sbjct: 266 RDPNASQGGKMGVVRYADLKDLLSEDDLATIFSM-KKGDILGVFTTLSGAWVIVRCDKEA 324 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + ++ ++ I N + + V+E + L + S+DE + Sbjct: 325 EAPDLTRKDTLDYIKNYLLSYE-RNIVEEYFSTKASALRVAQSLDEFEAMARDQGKTPGS 383 Query: 418 VDFAGKDV--------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + G + A Y E RVF D V L G Sbjct: 384 TGYFAINYGNLEMFPSPVANTDDGNILQAAAYSETFFERVFSTPVGGVTD-PVNLQGGLL 442 Query: 464 MWVQIKESIPARD 476 + E D Sbjct: 443 VAFIEAEKTEPED 455 >gi|85713800|ref|ZP_01044790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp. Nb-311A] gi|85699704|gb|EAQ37571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp. Nb-311A] Length = 305 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 5/151 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++D ++ Y ++ S + ++ P + EA + LKKG F +LA+++ Sbjct: 127 KAAITDDAMKTVYADASKQITSEQEVHARHILVPTEDEAKKIEGELKKGADFAELAKKES 186 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+KE + + F+L + G + + FG+ I V + Sbjct: 187 KDPGASDGGDLGFFTKEQMV-PEFSKVAFAL-EPGKISDPVKTQFGWHIIKVEEKRARKA 244 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK I + +E V + + + Sbjct: 245 PDFDQVKPQIEQFVTRKAQAEYVAKLRETAK 275 >gi|254560598|ref|YP_003067693.1| cell-binding factor 2 [Methylobacterium extorquens DM4] gi|254267876|emb|CAX23742.1| putative cell-binding factor 2 precursor (Major antigen peb4A), cbf2 [Methylobacterium extorquens DM4] Length = 300 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 6/176 (3%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y R +L D E+E K ++ + +A YE+ + E ++ ++ EA + Sbjct: 117 YFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAA 176 Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F ++A ++ G LG FS+E + AD+ F +A G + + Sbjct: 177 RVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKP-FADAAFKMA-PGQVSDPVKT 234 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 FG+ + V + +F E+K+ I + + + + + + A T+ Sbjct: 235 QFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERAGSTA 290 Score = 40.7 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 6/153 (3%) Query: 469 KESIPARDRKLEE--VLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 K P + L E V + +++ + E +A ++ K G++F I + Sbjct: 134 KAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAAR-VKGGEDFAKIAGEVS 192 Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 + + + + F V P++ + V +V + PV Sbjct: 193 KDPGSKTEGGDLGWFSQERMVKPFADAAFKMAPGQV-SDPVKTQFGWHVLRVEEKRTKPV 251 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 D+ + Q + + I L+ V Sbjct: 252 PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284 >gi|168188090|ref|ZP_02622725.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str. Eklund] gi|169294073|gb|EDS76206.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str. Eklund] Length = 247 Score = 113 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 5/165 (3%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + V++ ++E+++ E++ Y NK+ + E+ + + ++ ++ A E + +K Sbjct: 79 ALTQLSVNKVISQVELTDKEVEDYYNANKDNFVVGEMISAKHILVDTEELAKEVTEEIKN 138 Query: 293 GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F A + S +LG F K + ++ F+L + G + + FGY Sbjct: 139 GMTFSDAATKYSTCPSKAQGGNLGKFGKGQMV-PEFEEAAFNL-EIGKISEPVKTQFGYH 196 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + + + SF EV+ I + + K + L++ Sbjct: 197 LIEVEDKQEATKKSFDEVRDLIRTNLLQERQKVKYATTVEELKKK 241 >gi|157362935|ref|YP_001469702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae TMO] gi|157313539|gb|ABV32638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae TMO] Length = 343 Score = 113 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 51/389 (13%), Positives = 127/389 (32%), Gaps = 85/389 (21%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIG 72 K+F+ L + + + + ++ V V + + L I Sbjct: 3 KVFMFGLILILSLVAIGQE--TQPATAVVAEVNGVAITMEELNREANVDRLLSQIQSVDA 60 Query: 73 FVVNSERARSVGL------DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + S G+ +++L+NL+ + Q E +G+ + ++ Sbjct: 61 TFYDVLVNTSEGVNLLLRYKREVLNNLIDQVLIKQIGEKMGVTVSKDNIENMVSTE---- 116 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 L + G+ E + + + G+ N D+ + + Sbjct: 117 ----------LNKTLTQYGMTESDLDWYLKQ------------AGLGDINSFKDRLRWIF 154 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 ++V I + V + A + Q++E+ ++ + E ++ Sbjct: 155 TVQQTVSLI---QQQVTSSATVTEEEARQFYEQNREYFAVEEAAKLL------------- 198 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ ++++AD+A + ++ G++F Q+A + Sbjct: 199 ---------------------------RITVDSKEKADKALERIRAGEEFSQVASDVSTD 231 Query: 307 L----SDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 LG + + + + IF ++ KG + S G+ I + + +P Sbjct: 232 PLSKGKAGDLGWVERGSGLISEEIEEKIF-VSPKGAILGPLQTSVGWEIYRIIDKRPKGY 290 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 +F++V DI + KA + + Sbjct: 291 ENFEDVVNDIYQHLIQQKAQQLWQTWINE 319 >gi|162451238|ref|YP_001613605.1| foldase protein prsA precursor [Sorangium cellulosum 'So ce 56'] gi|161161820|emb|CAN93125.1| Foldase protein prsA precursor (EC 5.2.1.8) [Sorangium cellulosum 'So ce 56'] Length = 605 Score = 113 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 61/400 (15%), Positives = 131/400 (32%), Gaps = 58/400 (14%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 G++ V V + F N+ K L M + R R++G + + L Sbjct: 35 GNTCAVEVRGSCISSIDF-NASKNLLAM------RSPDENRLRAMGYRRLTAEGLYERWL 87 Query: 99 LDQFIEDIGLEADHGRVWGEI------ARSPLFH----------------------GKDN 130 L++ + +G+ + E+ P + Sbjct: 88 LNEDAKRLGITVSDDELTSELVAGRVHVSLPADKIRQVGYALSLREDLIRYLDVRNRQTK 147 Query: 131 KFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KF + + ++ ++ ++ ++ K L + + +R + Sbjct: 148 KFDNKQYEKQIRNITKMSPTDFREYQRKELIAARMRELIRARVRVGENEAFEQFSREKST 207 Query: 190 RSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIE 247 R++ Y+ + R I D S + W + K+ +A E ++ Y + +E Sbjct: 208 RTLAYVRFDRRFYSDLIVDTSEKAIQAWADNNKEELDKAWEGRKAQYQPECRVARVLAVE 267 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 + +E + E K + + A Q LKKG+ F +A Sbjct: 268 VRPEEAEQGPEAGKA---------------AAKARIEGAVQRLKKGESFADVARSASDDP 312 Query: 308 S---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S LG +K + + D +F + K GD + +I G+ + + I Sbjct: 313 SAARGGELGCVAKGRLSKP-VEDKLFEM-KAGDVSDLIETEDGFHVIKLEQIAKDAEAEK 370 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 ++ + ++ E K++ A G S+++ Sbjct: 371 IGRQETARDLYIAHESERLAAEAAKQVLAAAAGGKSLEDA 410 >gi|326790776|ref|YP_004308597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] gi|326541540|gb|ADZ83399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] Length = 330 Score = 113 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 116/392 (29%), Gaps = 96/392 (24%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSST--------VVSVGRQKVPFSSFINSWKQELGMISQ 69 +V+L V L +G+ S T + +VG KV + ++ Sbjct: 8 IVLLMVGLLGFGVVGCSKVADNSQTNNKTEDVVIATVGDGKVTKKALDQQLVYLDSLMQW 67 Query: 70 KIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 + G S +++ ++D LV + ++ + V E+ + Sbjct: 68 QYGEDYESNEEAMNYYNEQKRLMVDYLVEIQLIISKAQEYDVNVTADDVDEELELLKSDY 127 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 + F L G++ +E + L VV Sbjct: 128 DTE-----AAFEEALTTSGMSLEELKQMLKEDLIVNQVVTAST----------------- 165 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 S+ + +++ D+++ +S+IL Sbjct: 166 -----------------KDITVSDEEIKTYYDGNIDSFKTEAGATMSHIL---------- 198 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++EA E KG F LAEE G Sbjct: 199 ------------------------------VATEEEAKEIKAKYDKGTSFEDLAEEYGTD 228 Query: 307 LSDISLGSFS----KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFT 361 + G D S L + G+ + + G+ + V+++ K Sbjct: 229 ATKSQGGLLEYIPYNSTKYDADFLASAKQLDE-GEVSEPVKTQNGWHLIKVTDVNKEERI 287 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 S+ EVK +I Q+ I K +E V++ K +E Sbjct: 288 KSYDEVKDEIKEQLLIQKQNEVVEKKVKEWKE 319 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 31/265 (11%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----EADEAFQSLK--KGKKFIQLAE 301 SN+E Y + K + + ++ ++ Q+ AD+ + L+ K + A Sbjct: 75 SNEEAMNYYNEQK-RLMVDYLVEIQLIISKAQEYDVNVTADDVDEELELLKSDYDTEAAF 133 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 E+ + S +SL + D+ + + + K + IK + Sbjct: 134 EEALTTSGMSLEELKQMLKEDLIVNQVVTASTKDITVSD-------------EEIKTYYD 180 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 + K + M + + E+ K ++ GTS ++++ Sbjct: 181 GNIDSFKTEAGATMSHILVATE--EEAKEIKAKYDKGTSFEDLAEEYG-----TDATKSQ 233 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES-IPARDRKLE 480 G ++ + Y L D+ V +G + +++ + R + + Sbjct: 234 GGLLEYIPYNSTKYDADFLASAKQLDEG-EVSEPVKTQNG-WHLIKVTDVNKEERIKSYD 291 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQ 505 EV ++K+ K E V K + Sbjct: 292 EVKDEIKEQLLIQKQNEVVEKKVKE 316 >gi|329113840|ref|ZP_08242611.1| Cell-binding factor 2 [Acetobacter pomorum DM001] gi|326696850|gb|EGE48520.1| Cell-binding factor 2 [Acetobacter pomorum DM001] Length = 260 Score = 113 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 6/156 (3%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306 +D ++ Y++N + + ++ + EA++ + LK G F +LA E Sbjct: 90 DDAIKQYYDQNYAGKPAEKEVHARHILVKTEAEANDVIKKLKAGADFGKLAAEVSTDKGS 149 Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F K + + +D+ F++ K + + +GY + V + + + Sbjct: 150 AQQNGGDLGWFKKTDMI-PAFSDAAFAMKKGEISSTPVKSQYGYHVIQVLDTRTDPVPTL 208 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 V+ I + E V + +++ + Sbjct: 209 DSVRDKIRQALIQKYVREAVDKATNQVKIVRFDPNT 244 >gi|282877139|ref|ZP_06285980.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281300737|gb|EFA93065.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 713 Score = 113 bits (284), Expect = 8e-23, Method: Composition-based stats. Identities = 91/725 (12%), Positives = 203/725 (28%), Gaps = 133/725 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IRK I + ++ + + + S S + V +KV F Sbjct: 4 LGKIRKR-----GLILISIIGLGLFAFIAEEGFRSCEASRNDRRQQIGEVLGEKVSVQDF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +I + G N + + + + ++ +GL + Sbjct: 59 QKLIDEYSEVIKMQQGVN-NLNEMQLNQVKDMVWQTYIQTKVVENEANKLGLTVTDAELQ 117 Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRLA----REGINEKEYIDH---------- 154 + ++P + + +F + LA ++ N + + Sbjct: 118 NILNEGTNPMLMQTPFVNQQTGRFDANSLKKFLADYKTQQTANPQLAEQYQALYKYWTFI 177 Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY------------IVLNN 199 + L + + + + A + E ++ + +++ Sbjct: 178 EKTLRQQLLAQKYQSLLASCILSNPVEAKMAYKEANEESQIELATFPYSSIEDSKVKISD 237 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPE------------------------------- 228 + A + Q+ E Y + Sbjct: 238 ADLKAKYEEVKGRFKQYVESRDIKYVTVQVAPSANDRAALQKSFTKYTADLAAAADPANA 297 Query: 229 ----YKRISYILFDVHEKEKKIEISND-------ELQAEYEKNKE----------KYFSP 267 ++Y+ V + +I++ + +E + K P Sbjct: 298 VRKSTSLVNYLGLPVAKTAYAADIADRLDSMAVGQTFGPFESQMDNTLNVIKLVSKQLLP 357 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319 + Q+ QK AD + +L G F LA++ G++ + ++ + + Sbjct: 358 DSVQYRQIQVMGATADEAQKRADSIYTALNGGADFELLAKKYGQTGEKTWLTTAQYQQAP 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D I +L G + + G VI V + + V I + Sbjct: 418 SMDADTKTYINTLNNLG-VSETRNMKLGQGNVIIQVVDRRAMINKYTAAV---IKKTIDF 473 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y + F++ + D+I++ K + + I Sbjct: 474 SK--ETYSTAYNKFSSFVSANQTPDKIAKNAKGCGYTVQEAKDITTST--HTLVGINDTR 529 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKT 495 L +F + + + V + + P R + +V +K + K Sbjct: 530 DALKWLFEAKEGEISPMYECGNNDQLLLVVLDKIHPKGYRAYDDPQVKEMLKAEVMRDKK 589 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYDGISQ 551 AE++ +KA + K GA++ NQ+ Sbjct: 590 AEQLMAKAKDVKS---------VSAAKAKGATVAPVNQVTFSAPVFVMSTGASEPALSGA 640 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 V + P++ VF+VTN P + + K + + + L Sbjct: 641 VAATAKGQFSAKPVKGNAGVYVFQVTNRTTRPGKFEAKAEEDKARQKALQFAGNFMNELV 700 Query: 612 SQYSV 616 + V Sbjct: 701 IKAGV 705 >gi|253701712|ref|YP_003022901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251776562|gb|ACT19143.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 323 Score = 113 bits (284), Expect = 8e-23, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 76/357 (21%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V + + K L ++ + E + + LD L+S Sbjct: 30 SQDVPALVNGAPITRGEVDRAVKALLS--QNRMAQPIAPEVMKKAT--EAALDQLISAEV 85 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L Q ++G+ +V +A + + D + L ++EKE K Sbjct: 86 LYQAASEMGVADLDRQVRDRVA-----QSRSRYRTGDEYEKALDSVEMSEKEVELAVRKD 140 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + +++ A S A + +++ Sbjct: 141 IVINNLIRT---------------------------------QFLPKATVSEAEIEEFYR 167 Query: 219 KYKDN-YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + ++ +R E R+S IL V + +P R Sbjct: 168 ENREKSFRLGERVRVSQILVPV----------------------PEQATPAARK------ 199 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAK 334 +++A Q ++KG+ F +A + + +G ++ S + F L K Sbjct: 200 QAREKALALLQRVRKGEDFAAVASLESAPPTNKNGGDMGGLNRGEAV-PSFEKAAFGL-K 257 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ + V+ G+ I +S P T + E + I ++ +K + V E +L Sbjct: 258 VGEVSEVVETPVGFHIVKLSQKLPPATATLDEARGQIVRYLQQSKVRKSVAEYAAQL 314 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG-KEVAA 432 + A ++ +E L + + G ++ E P + G D+ G A Sbjct: 191 EQATPAARKQAREKALALLQRVRKGEDFAAVASLESA-----PPTNKNGGDMGGLNRGEA 245 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P E+ F + V P G + V++ + +P L+E + + + Sbjct: 246 VPSFEKAAFGL----KVGEVSEVVETPVG-FHIVKLSQKLPPATATLDEARGQIVRYLQQ 300 Query: 493 VKTAEEVSSKANQLVL 508 K + V+ A QL Sbjct: 301 SKVRKSVAEYAAQLRA 316 >gi|326791007|ref|YP_004308828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] gi|326541771|gb|ADZ83630.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] Length = 246 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + + + S++E++ YE ++ ++ S E ++ +EA++ + +K G F + A Sbjct: 86 KLLESVTASDEEVKEYYETHQGQFKSDEAAKANHILVATLEEAEKVAEEIKAGLSFAEAA 145 Query: 301 EEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + +LG F++ + + F+++ G+ + + FGY I + + Sbjct: 146 KKYSTCPSASQGGALGEFTRGRMV-PEFETAAFAMS-PGEISAPVQTQFGYHIIELEALT 203 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 P+ + VK+ + Q + K + LE Sbjct: 204 PAGLSPLEAVKEQVKEQCLLAKRQALYLAKRQELESL 240 >gi|313679732|ref|YP_004057471.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] gi|313152447|gb|ADR36298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] Length = 308 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 93/265 (35%), Gaps = 28/265 (10%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQ 215 L + GG S+ Q + R V V+ P A + + Sbjct: 41 DLQFDLFLRQSTGGAALSDEARAQLAPLKKQYLQRMVQDAVVVQAAERLGLAPDEATIDR 100 Query: 216 WFEKYKD-------------NYRAPE---YKRISYILFDVHEKEKKIE----ISNDELQA 255 E+ K Y P+ Y+R++Y I IS + Sbjct: 101 RVEQAKQRLSGEAAFLAALKQYGIPDVATYRRMTYDAMAYKAMIGWIRQRLRISEAATRM 160 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDIS 311 Y ++E Y PE ++ P+++EA++ LK G F +LA ++ G + Sbjct: 161 LYLLDREAYAEPEQICTAHILVPSREEAEDVIARLKGGADFAELAREVSQDPGSAPRGGD 220 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG + + +L + G + + FG+ + +++ +P+ + ++EV+ I Sbjct: 221 LGCVALGRFV-PEFERAALAL-QPGQVSEPVQTQFGWHVIRMNDRRPARVLPYEEVRGQI 278 Query: 372 ANQMRITKASEKVKEDYKRLEEFLA 396 ++ VK + + Sbjct: 279 RAKIEGLAIERFVKNLVAHADAEVY 303 >gi|23009953|ref|ZP_00050812.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 218 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 6/173 (3%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 E K ++ + +A Y++ + E ++ ++ EA + +K G+ F ++A E Sbjct: 42 EAKKAVTPEAAKALYDQTVKSMKPEEEVHARHILVESEDEAKKIAARIKGGEDFAKVAAE 101 Query: 303 QGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 K LG F++E + AD+ F LA G + + FG+ + V + Sbjct: 102 LSKDPGSKTEGGDLGWFTQERMVKP-FADAAFKLA-PGQVSDPVKTQFGWHVLRVEEKRT 159 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 +F E+K+ I + + + + + + G++ + Sbjct: 160 KPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERVGGSATPAAGEAKGET 212 Score = 39.2 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%) Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDI 520 K P + L + + K++K EEV ++ + + K G++F + Sbjct: 45 KAVTPEAAKALYD------QTVKSMKPEEEVHARHILVESEDEAKKIAARIKGGEDFAKV 98 Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 L + + + + F V P++ + V +V Sbjct: 99 AAELSKDPGSKTEGGDLGWFTQERMVKPFADAAFKLAPGQV-SDPVKTQFGWHVLRVEEK 157 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + PV D+ + Q + + I L+ V Sbjct: 158 RTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 195 >gi|86359353|ref|YP_471245.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CFN 42] gi|86283455|gb|ABC92518.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CFN 42] Length = 293 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 10/203 (4%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q + + + V + A + L Q D ++ L + + Sbjct: 52 QLAQLPDDQKKVAALSAAIDVKLLAAGATTEKLEQ-----TDEFKKRMQYLTDRELHNAY 106 Query: 241 EKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K+ ++ ++ DE++A Y+K E ++ + EA + + L GK F +L Sbjct: 107 FKKHVVDTVTPDEIKARYDKEVAALPKQEEVHARHILVKTEDEAKDIIKQLDAGKDFAEL 166 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+E+ + LG FS+ + D+ F+L K + FGY + V + Sbjct: 167 AKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALEKGAYSKTPVKTDFGYHVIKVEDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITK 379 + + F +V+ + + K Sbjct: 226 RDAPPPPFDQVQDQVRQLVMRDK 248 >gi|158321661|ref|YP_001514168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus oremlandii OhILAs] gi|158141860|gb|ABW20172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus oremlandii OhILAs] Length = 317 Score = 113 bits (283), Expect = 9e-23, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 10/194 (5%) Query: 205 IADPSNAVLTQWFEKYK--DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 S+ + E+ K D + + ++ +K EI+ + YE+N E Sbjct: 121 KVMESDENYKKLIEENKLDDAFIKEQIRKDLIAYKYNQFYLEKTEINEAAAKTFYEENPE 180 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKE 318 + E + + ++ ++ A E L+ G F +LA+E +LG F K Sbjct: 181 GFH-NEQVSAKHILVETEETAKEVIGKLEAGADFAELAKEYSTEPGAEQTGGNLGYFKKG 239 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + + F+L + G + + FGY + V + SF++ K DI + ++ Sbjct: 240 RMV-PEFEKAAFAL-EVGKISEPVKTDFGYHVIVVEDKVDESI-SFEDAKADIVDYLKRL 296 Query: 379 KASEKVKEDYKRLE 392 + ++E K+ Sbjct: 297 DYQKHLEEALKKAN 310 >gi|190893605|ref|YP_001980147.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 652] gi|190698884|gb|ACE92969.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CIAT 652] gi|327193395|gb|EGE60295.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli CNPAF512] Length = 293 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + ++D +L + D ++ Sbjct: 36 EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAIAEKLDQTDE------ 89 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ L + + K+ ++ ++ DE++A Y+K E ++ Sbjct: 90 ------FKKRMQYLSDRELHNAYFKKHVVDTVTPDEVKARYDKEVAALPKQEEVHARHIL 143 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 + EA E + L GK F +LA+E+ + LG FS+ + D+ F+L Sbjct: 144 VKTEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 K + FGY + V + + + F +V+ + + K Sbjct: 203 KGAYSKTPVKTDFGYHVIKVEDKRDAPPPPFDQVQDQVRQLVMRDK 248 >gi|108758581|ref|YP_628738.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622] gi|108462461|gb|ABF87646.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622] Length = 325 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 52/359 (14%), Positives = 104/359 (28%), Gaps = 73/359 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V R + S E+ ++ +R L K LD L+ + Sbjct: 29 DKVAAVVNRDIIALSEVQQRAAPEMARVNDPDPRKRGEQRL---QLMKTALDTLIGEKLM 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + I +G+ A V +A ++N F L EG+ Y D K + Sbjct: 86 ESEIAQLGITASEAEVDELVADV---RQQNNITDPAQFEQLLLGEGLTMATYRDMMRKRI 142 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ M VG + L + + Sbjct: 143 LRDRLLRMKVG---------------------------------PQVKITEEDLKAAYTQ 169 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 Y +IL V K ++ Sbjct: 170 YTRMESGDSEVHARHILVQVDAKATAEQVE----------------------------AA 201 Query: 280 QKEADEAFQSLKK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K A+ ++ G F LA + + LG F + + + + F L + Sbjct: 202 KKRAEAIATEARRPGMDFASLARARSEGPSAADGGDLGWFKRGVMV-PAFEKAAFGLPEG 260 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + + +FG+ + V + S++E++ + ++ K + + + + L + Sbjct: 261 G-VSEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYVQELRQK 318 Score = 47.3 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 5/131 (3%) Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 T + E +A + E + G +F + + + + + Sbjct: 194 TAEQVEAAKKRAEAIATEARRPGMDFASLARARSEGPSAADGGDLGWFKRGVMVPAFEKA 253 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKV----TNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 F P V P+ + V KV T + + + K L Q + LD + Sbjct: 254 AFGLPEGGV-SEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYV 312 Query: 608 AYLKSQYSVTV 618 L+ + +V V Sbjct: 313 QELRQKANVDV 323 >gi|229541454|ref|ZP_04430514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus coagulans 36D1] gi|229325874|gb|EEN91549.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus coagulans 36D1] Length = 290 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 26/222 (11%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVL--------TQWFEKYKDNYRAPEYKRIS 233 ++ E + + + + L Q+ + ++R + Sbjct: 54 LQQLTIEKVLSKKYTVKKSEIDKQVNDTKKQLGSSFNTALQQYGYANEKDFRN----SVK 109 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 L + E I + +L+ Y + + ++ ++ +A++ + L KG Sbjct: 110 VGLLEQKAAEATIHPTEKQLKNYYNNDIKP-----KIKARHILVSSKSKAEDIKKQLDKG 164 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F LA++ + LG F + D ++ + L K + + + S+GY Sbjct: 165 ADFATLAKKYSTDTATASKGGDLGWFGAGEM-DSDFENAAYKL-KVNEISGPVKTSYGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKR 390 I ++ K + E+KKD+ Q + +K +EK++ K+ Sbjct: 223 IIQLTGEK--QKKPYSEMKKDVVKQYKESKVTTEKIQSVLKK 262 >gi|255528699|ref|ZP_05395439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium carboxidivorans P7] gi|296188773|ref|ZP_06857156.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium carboxidivorans P7] gi|255507609|gb|EET84109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium carboxidivorans P7] gi|296046636|gb|EFG86087.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium carboxidivorans P7] Length = 248 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 7/181 (3%) Query: 219 KYKDNYRAP-EYKRISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + +Y A E + + + +++ + + E++ Y NKE + PE + + ++ Sbjct: 63 ENDSDYIAQLEMAKKEILTQTAIAKVMQQVSVEDKEVEDYYNANKENFKEPETVSAKHIL 122 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 ++++A E + + G F A++ S +LG F + + ++ F+L Sbjct: 123 VESEEKAKEVAEEINAGTTFEDAAKKYSSCPSKEQGGNLGKFGRGQMV-PEFEEAAFAL- 180 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + G + + FGY + V + SF+EVK I N++ + S K + K L + Sbjct: 181 EIGTLSAPVKTQFGYHLIKVEDKSKGAVKSFEEVKNSIKNKLLQERQSFKYTQLNKELRQ 240 Query: 394 F 394 Sbjct: 241 K 241 >gi|170747170|ref|YP_001753430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] gi|170653692|gb|ACB22747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] Length = 311 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 12/194 (6%) Query: 226 APE-YKRISYI-----LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 PE ++++Y L D E+E K ++ + A Y++ + E ++ N Sbjct: 119 TPEFKRKLAYFRDKLLLDDYLEQEAKRAVTPEAEHAIYDQTVKLMKPEEEVHARHILVDN 178 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335 + EA + +K G+ F ++A E K LG F+KE + A++ F++ K Sbjct: 179 EAEAKKIAARIKGGEDFAKVAAEASKDPGSKAEGGDLGWFTKERMV-PDFANAAFAM-KA 236 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + I FG+ + V + +F E+K+ I + + + + + Sbjct: 237 GQVSDPIKTQFGWHVIKVEEKRTKPQPTFDELKEQIDQHLIRKAQQDMILKLRSEAKIER 296 Query: 396 ALGTSMDEISRREK 409 A + + K Sbjct: 297 ADAPPAAQTAPEPK 310 Score = 41.5 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 2/115 (1%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562 + + K G++F + + + + + D + F+ V Sbjct: 182 AKKIAARIKGGEDFAKVAAEASKDPGSKAEGGDLGWFTKERMVPDFANAAFAMKAGQV-S 240 Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 PI+ + V KV + P D+ + Q + + +I L+S+ + Sbjct: 241 DPIKTQFGWHVIKVEEKRTKPQPTFDELKEQIDQHLIRKAQQDMILKLRSEAKIE 295 >gi|158521718|ref|YP_001529588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus oleovorans Hxd3] gi|158510544|gb|ABW67511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus oleovorans Hxd3] Length = 316 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 121/359 (33%), Gaps = 73/359 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V V ++ + S + I +++ E ++++D+L+ Sbjct: 20 DRIVAFVNQEIILLSELEKAMALYETAIRERQLPADTEKEMLYRA--RQEMIDHLIDRRL 77 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q +++G+ D V + R + F+ + LA +G + Y + + Sbjct: 78 IQQRADELGVTVDDREVDDAMERM----KRSMLFTDEDLRQSLAEKGYTLEGYRNELREQ 133 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + R V+ + V + + + ++E Sbjct: 134 ILRQRVLTL---------------------------------EVKSKVVVTPVDIQAYYE 160 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + Y A + I+ V + +T+ +++ Sbjct: 161 THPEEYSAGRQYHLRNIIMRVDKDMPDES---------------------KKTISEMM-- 197 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKK 335 + L+ G+ F LA + +S LG F+ E + L ++I L + Sbjct: 198 -----QKIHDRLQAGESFETLASQYSQSSFAEKGGDLGFFALEDLA-PQLREAIEEL-QA 250 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+FTPV+ GY I ++ I+ VS ++ +I ++ E+ ++ L E Sbjct: 251 GEFTPVLDTPLGYQILYLEEIQEKPAVSLEKATDEIREKLYEDLLEERFEKWVTELREK 309 >gi|299132839|ref|ZP_07026034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] gi|298592976|gb|EFI53176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2] Length = 298 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 5/155 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++E K +++ L+ Y+ ++ + ++ + EA E LKKG F +LA Sbjct: 120 DQEGKAAVTDAALKKVYDDAAKQISGEQEVHARHILVGTEAEAKEIIAELKKGADFAELA 179 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +++ K LG F+K+ + + + F+L + G + + FG+ + V + + Sbjct: 180 KKKSKDPGASDGGDLGYFTKDQMV-PEFSAAAFAL-EPGKISEPVKSQFGWHVIKVEDKR 237 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F++VK + + +E V + + Sbjct: 238 ARKAPPFEQVKPQLEAFVIRKAQAEYVAKLRSDAK 272 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 8/149 (5%) Query: 475 RDRKLEEVLTDVKKDWKTVKTAEE------VSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 D L++V D K + ++A +++ E K+G +F ++ K Sbjct: 128 TDAALKKVYDDAAKQISGEQEVHARHILVGTEAEAKEIIAEL-KKGADFAELAKKKSKDP 186 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 ++ + + + F+ + P+++ + V KV + + + Sbjct: 187 GASDGGDLGYFTKDQMVPEFSAAAFALEPGKI-SEPVKSQFGWHVIKVEDKRARKAPPFE 245 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + L + + +A L+S + Sbjct: 246 QVKPQLEAFVIRKAQAEYVAKLRSDAKIE 274 >gi|192288942|ref|YP_001989547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris TIE-1] gi|192282691|gb|ACE99071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris TIE-1] Length = 316 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 9/214 (4%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +R + + + + D + ++ R ++ DV Sbjct: 68 LAQLDPASRKENVLAFLIDMKIVAKAAEDKKIQD----NADFKKRLDFARNRLLMDDVLA 123 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 E K +++ ++ Y++ ++ + ++ + EA + LKKG F +LA+ Sbjct: 124 AEGKAATTDEAMKKVYDEAAKQISGEQEVHARHILVETEDEAKAVAEELKKGADFAELAK 183 Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++ K LG F+K+ + + + F+L + G + I FG+ I V + Sbjct: 184 KKSKDPGASDGGDLGFFTKDQMV-PEFSAAAFAL-EPGKISDPIKTQFGWHIIKVEEKRN 241 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 SF +VK I + S+ V + + + Sbjct: 242 RKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAK 275 Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%) Query: 399 TSMDEISRREKIVS--IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 +D SR+E +++ ID+ +V A +D K ++ A + DD L+ + Sbjct: 69 AQLDPASRKENVLAFLIDMKIVAKAAEDKKIQDNADFKKRLDFARNRLLMDDVLAAEGKA 128 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 A D + +K+ +++ +V V+T +E + A +L K+G + Sbjct: 129 ATTDEA-----MKKVYDEAAKQIS-GEQEVHARHILVETEDEAKAVAEEL-----KKGAD 177 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576 F ++ K ++ + + + F+ + PI+ + + KV Sbjct: 178 FAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAAAFALEPGKI-SDPIKTQFGWHIIKV 236 Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + D+ + + Q + + ++ L+ + Sbjct: 237 EEKRNRKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAKIE 277 >gi|218529730|ref|YP_002420546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] gi|240138037|ref|YP_002962509.1| putative cell-binding factor 2 precursor (Major antigen peb4A), cbf2 [Methylobacterium extorquens AM1] gi|218522033|gb|ACK82618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium chloromethanicum CM4] gi|240008006|gb|ACS39232.1| putative cell-binding factor 2 precursor (Major antigen peb4A), cbf2 [Methylobacterium extorquens AM1] Length = 300 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 6/185 (3%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y R +L D E+E K ++ + +A YE+ + E ++ ++ EA + Sbjct: 117 YFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAA 176 Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F ++A ++ G LG FS+E + AD+ F + G + + Sbjct: 177 RVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKP-FADAAFKMT-PGQVSDPVKT 234 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + V + +F E+K+ I + + + + + + A T+ Sbjct: 235 QFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERAGSTATPAA 294 Query: 405 SRREK 409 +K Sbjct: 295 GETKK 299 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 16/158 (10%) Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDI 520 K P + L E + K++K EEV ++ + + K G++F I Sbjct: 134 KAVTPEAAKALYE------QTVKSMKPEEEVRARHILVESEDEAKKIAARVKGGEDFAKI 187 Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + + + + + F V P++ + V +V Sbjct: 188 AGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHVLRVEEK 246 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + PV D+ + Q + + I L+ V Sbjct: 247 RTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284 >gi|167765104|ref|ZP_02437217.1| hypothetical protein BACSTE_03490 [Bacteroides stercoris ATCC 43183] gi|167696732|gb|EDS13311.1| hypothetical protein BACSTE_03490 [Bacteroides stercoris ATCC 43183] Length = 712 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 95/727 (13%), Positives = 208/727 (28%), Gaps = 136/727 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + F + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G S+ ++ + ++ V+ ++ E +GL + I Sbjct: 61 EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157 + F F D+ L + + +Y ++Y K Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYNSMYNFWSFVEK 178 Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179 L + + F + S+LLL Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW---FEKYKDNYR--- 225 + R Y E R++ YI + P + ++ + +Y Sbjct: 239 LKDAYNKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTVQLAENPSDYSNFI 298 Query: 226 -----APEYKRISYI----LFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266 +Y + Y DV + +++ S++ + + K Sbjct: 299 RSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSF--KKLASAAM 356 Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ + A D + ++K G F ++A++ G++ + IS ++ Sbjct: 357 PDSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416 Query: 319 YIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + +L + + + + + G VI V N K VK + Sbjct: 417 QVDGDNLKYIAAITTLGQNELANLALGQAN-VILQVMNKKA--------VKDKYKVAVIK 467 Query: 378 ---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + E + Y +F+A ++D++ + L +D + + Sbjct: 468 RPVEFSKETYSKAYNDFSQFIAANNTLDKLVANAEDAGYRL--LDRTDLYSSEHAIGGVK 525 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 ++ L F M V + IP R L V ++ + K Sbjct: 526 GTKEALRWAFAAKAGEVSGLYECGESDHMMVVAVTNIIPEGYRPLSMVQEQLRSEILRDK 585 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 KA +++ + G D + + S+ + Sbjct: 586 -------KAEKIMADMKAAGATTFDQYKNMANAVSDSVKHVTFAAPAYVPALRSSEPLVG 638 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 S PI+ V + + + + M+ + + + L Sbjct: 639 AYASIAELNKLSAPIKGNGGVFVLQPYAKEKLNETYNQETEEATLEGMHARIANQFMNDL 698 Query: 611 KSQYSVT 617 +V Sbjct: 699 YLNANVK 705 >gi|301059212|ref|ZP_07200150.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] gi|300446702|gb|EFK10529.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2] Length = 343 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 122/391 (31%), Gaps = 92/391 (23%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 I K +FL+V L + V+ VG Q++ Sbjct: 23 FIFKRKSNIFYTLFLLVTAFGGLFFVEGCDRIGKDPGPVVLVVGDQQLTADVLKQ----- 77 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 ++ + ++ + + +LDN++ + ++ + G+ + Sbjct: 78 -NLLLASEDLPIPAKE--TENIKTALLDNIIDRYLILEYAKQHGIVVSEKEFQARLIDIK 134 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 +S +F L R+ + ++ + + + V+ M P + Sbjct: 135 ------KGYSESLFEEMLLRKWGDPDVWMKRFKEQIVIEKVINAVTVHMEPPDY------ 182 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + FE ++Y+APE Sbjct: 183 ---------------------------KEMKARFESNPNHYKAPE--------------- 200 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 Q+ +K+A+E + ++ G+ LA + Sbjct: 201 -------------------------EIRFRQIFCRTKKKANELYGKIRSGESLASLARKY 235 Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +++ +G +K I D SL +F +A GD +PV G+ GY I V + +P Sbjct: 236 SEGPEAVDGGEVGWVAKG-ILDESLDKMLFQMA-PGDISPVTKGASGYHIFEVMDRRPGG 293 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +F E+ I + T+ +KE + L Sbjct: 294 FRAFSEIIDGIEEDLCQTRRMSFIKEWLQSL 324 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 6/141 (4%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 ++ + + KAN+L + + G++ + + + Sbjct: 200 EEIRFRQIFCRTKKKANELYGKI-RSGESLASLARKYSEGPEAVDGGEVGWVAKGILDES 258 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLL 603 +F + + Y +F+V + + G + + I + Q + Sbjct: 259 LDKMLFQMAPGDISPVT-KGASGYHIFEVMDRRPGGFRAFSEIIDGIEEDLCQTRRMSFI 317 Query: 604 DSVIAYLKSQYSVTVHDNLIQ 624 + L+S V ++ I Sbjct: 318 KEWLQSLRSDIRVKINQKAID 338 >gi|258593267|emb|CBE69606.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [NC10 bacterium 'Dutch sediment'] Length = 351 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 63/376 (16%), Positives = 121/376 (32%), Gaps = 73/376 (19%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 +++L F G + V V + + Q + I ++ Sbjct: 37 VILLLSVFAASGADAVIL----DRIVAVVNDDVITLTDVQEEGIQAIRRIVRETLGAERE 92 Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 RS +++ILD L+ Q +E + I ++ S + Sbjct: 93 RLLRST--ERQILDELILRRLQLQEATKEKIETAPAEIQSAIEE---LKKRNGLASDEEL 147 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 + L+RE ++E+++ + T +V R V Sbjct: 148 RAALSREQLSEEQFRKGIADQVMLTKLVA-----------------------RRVR---- 180 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 A + + Q++E+ +D +R +I ++L + E+S Sbjct: 181 ------AKVVVLDEEVQQYYEQRQDQFREIPQFKIRHLLVATPPQATPGELSRA------ 228 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG--SF 315 +K +EA LKKG +F +A++ + S G Sbjct: 229 ----------------------KKRIEEAQTLLKKGTQFATVAKQYAEGPLASSSGEVWT 266 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 K L + +L G + +I G+ + V P T+SF +VK+ + + Sbjct: 267 MKHGELAPELEQAALALP-IGQPSGIITTPAGFHLIVVEERVPGQTLSFDQVKERLRALL 325 Query: 376 RITKASEKVKEDYKRL 391 K K KE + L Sbjct: 326 FEQKTETKFKEWIESL 341 >gi|308172978|ref|YP_003919683.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens DSM 7] gi|307605842|emb|CBI42213.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens DSM 7] Length = 285 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 16/205 (7%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240 + E ++++ + L + K Y ++ Y L Sbjct: 54 LTQLVQEKVLAKKYKVSDKEIDNKLKEYKTQLGDQYSALKQQYGEDYLKDQVKYELLAQK 113 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I++++ + + Y+ K K ++ ++K ADE + LKKG+KF LA Sbjct: 114 AAKDNIKVTDSDTKEYYDGLKGKI------RASHILVADKKTADEVEKKLKKGEKFETLA 167 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +E S LG F K+ + D + + + F L K G + + FGY I + + Sbjct: 168 KEYSTDSSKDNGGDLGWFDKKSM-DETFSKAAFGL-KVGQVSDPVKTKFGYHIIKKTEER 225 Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382 + ++KK++ ++ K ++ Sbjct: 226 GK----YDDMKKELKEEVLKQKLND 246 >gi|255321569|ref|ZP_05362727.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277] gi|255301425|gb|EET80684.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277] Length = 270 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 11/163 (6%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG--- 293 + I++S E+ Y KNK ++ P + ++ +K+A++ +LK KG Sbjct: 100 MKRIFDNIKVSEGEISDFYNKNKAEFAVPAQVRAKHILVATEKDANDIIAALKGLKGDEL 159 Query: 294 -KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KKF +LA+ +QG + + LG F + + AD+ F+L K + +FGY Sbjct: 160 VKKFEELAKSKSTDQGSAANGGELGWFGQSQMVKP-FADAAFALKKGEVTQKPVKSNFGY 218 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + K + TV EVK I +++ K +++ L Sbjct: 219 HVILKEDSKAAGTVGLNEVKPQIEGNIKMEKFRNDIRKRGDEL 261 >gi|241206516|ref|YP_002977612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860406|gb|ACS58073.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 293 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 17/234 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + ++D +L D ++ Sbjct: 36 EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAAAEKLDQTDE------ 89 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ L + + K+ ++ ++ DE++A Y+K E ++ Sbjct: 90 ------FKKRMQYLTDRELHNAYFKKHVVDIVTPDEVKARYDKEVAALPKQEEVHARHIL 143 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 + EA + + L GK F +LA+E+ + LG FS+ + D+ F+L Sbjct: 144 VKTEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 K + FG+ + V + + + F++V+ + + K E + + Sbjct: 203 KGTYSKTPVKTDFGFHVIKVEDKRDAPPPPFEQVQDQVRQLVMRDKYLELLNKA 256 >gi|189501506|ref|YP_001957223.1| hypothetical protein Aasi_0039 [Candidatus Amoebophilus asiaticus 5a2] gi|189496947|gb|ACE05494.1| hypothetical protein Aasi_0039 [Candidatus Amoebophilus asiaticus 5a2] Length = 597 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 81/608 (13%), Positives = 197/608 (32%), Gaps = 78/608 (12%) Query: 4 IIRKASRTWVAKIFLVVLFVPFL---IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 IR+ +R + + + +LF F+ ++GL+ + + S + V ++V F + Sbjct: 6 KIRERTRLLIVVVSIGLLF--FIARELFGLN--PLTSNNSPIIGKVAGKEVTLREFQDRL 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 G + + + L K+ L + D+ +D+G+ + + Sbjct: 62 DDLQHNFLMHYGQ--SPDEEENTTLRKQAWRQLTNEIIYDKVCKDLGITVGSDELVDMVQ 119 Query: 121 RS-------PLFHGKDNKFSHDV----FVSRLAREGINEKEYIDHYTKMLS----RTDVV 165 + F ++ K + ++ LA+ N + + ++L+ + Sbjct: 120 GTHIHPDLKAAFTNRETKEFNKKDLLAYLQSLAQVPANNQRHWHTLERILAASRCQDKFN 179 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNY 224 + + ++L + Y+ + + + + ++A+L ++ K+ +Y Sbjct: 180 QLMDQSVFVNSLEAQHQFNINNTTLDIQYLYVPYKSIKKESTSITDAMLKEYLAKHTADY 239 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + E K I Y+ F + + ELQ Sbjct: 240 QVEESKHIRYVTFPIVASKNDKLAFQKELQKL---------------------------K 272 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 E F + ++ F + + +L + +++ +P + + KKG + Sbjct: 273 EDFANTQEASAFASIHTDTDPTLVYLQ---CTEKDLPAPLVEHK--NTLKKGMVVGPLAI 327 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR-ITKASEKVKEDYKRLEEFLALGTSMDE 403 Y V N+ + ++ V I ++ + EK+ + + Sbjct: 328 GKDYKFYKVVNLVDATPKKYELV--VIEKRLAPSDETKEKIFRKADDFASQVTNKAQFET 385 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + + + ++ + +L+ ++ L + Y Sbjct: 386 QVAKYSLQVQEAKV------GKDDTDINKLTNARELVRWLYNSAKVGQVSSIFELTNN-Y 438 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + + A L+EV DVK+ + + ++ K + ++ K Sbjct: 439 VIAMVASHTHAGTASLDEVKKDVKQKAINEQRVKIITEKLQPIAN------LPLEELAKQ 492 Query: 524 LG--ASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 G A + T Q+ N + G ISQ FS + I + VV V Sbjct: 493 YGGEAKIFTVPQVKFSANTLQGIGSAPKTISQAFSLQPGQ-RSKIIADLSGIVVLDVIQH 551 Query: 580 KVGPVQEK 587 + + + Sbjct: 552 QTSKLPDS 559 >gi|256545179|ref|ZP_05472545.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170] gi|256399220|gb|EEU12831.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170] Length = 339 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 27/260 (10%) Query: 146 INEKEYIDHY----TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 I + Y D + SR + V + L+ D K+ N VD L+++ Sbjct: 59 ITKDSYKDEMSFYSAMLASRQQLKPSIVQMLVQDKLIADDMKKN---NVKVDDKALDDKF 115 Query: 202 VPAIADPS-----NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + + + +L + D ++ K Y E+K + +++ Sbjct: 116 LQYVQQFGGQEKFDKMLED-YNMSSDKFKETIKKDEIYQKHRAW-FEEKNPVDEKQIKKY 173 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312 YE+NK+ ++ ++ A + + L G+ F +LA+E K + L Sbjct: 174 YEENKDTLS---QVKASHILVADEATAKQVKEKLDNGEDFAKLAKEYSKDTANAEKGGDL 230 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G F+K+ + AD FS+ KK + + + S+GY I V++ K S + +K +I+ Sbjct: 231 GYFTKDKMVK-EFADKAFSM-KKDEVSDPVKTSYGYHIIKVTDKKDSP----EALKDEIS 284 Query: 373 NQMRITKASEKVKEDYKRLE 392 + K S+ + + + + + Sbjct: 285 KTLNDKKYSDYLTDLFNKAK 304 >gi|39933588|ref|NP_945864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris CGA009] gi|39647434|emb|CAE25955.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris CGA009] Length = 311 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 9/214 (4%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 + +R + + + + D + ++ R ++ DV Sbjct: 68 LAQLDPASRKENVLAFLIDMKIVAKAAEDKKIQD----NADFKKRLDFARNRLLMDDVLA 123 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 E K +++ ++ Y++ ++ + ++ + EA + LKKG F +LA+ Sbjct: 124 AEGKAATTDEAMKKVYDEAAKQISGEQEVHARHILVETEDEAKAVAEELKKGADFAELAK 183 Query: 302 EQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++ K LG F+K+ + + + F+L + G + I FG+ I V + Sbjct: 184 KKSKDPGASDGGDLGFFTKDQMV-PEFSAAAFAL-EPGKISDPIKTQFGWHIIKVEEKRN 241 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 SF +VK I + S+ V + + + Sbjct: 242 RKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAK 275 Score = 42.3 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%) Query: 399 TSMDEISRREKIVS--IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 +D SR+E +++ ID+ +V A +D K ++ A + DD L+ + Sbjct: 69 AQLDPASRKENVLAFLIDMKIVAKAAEDKKIQDNADFKKRLDFARNRLLMDDVLAAEGKA 128 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 A D + +K+ +++ +V V+T +E + A +L K+G + Sbjct: 129 ATTDEA-----MKKVYDEAAKQIS-GEQEVHARHILVETEDEAKAVAEEL-----KKGAD 177 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576 F ++ K ++ + + + F+ + PI+ + + KV Sbjct: 178 FAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAAAFALEPGKI-SDPIKTQFGWHIIKV 236 Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + D+ + + Q + + ++ L+ + Sbjct: 237 EEKRNRKPPSFDQVKAQIEQYVTRKAQSDYVSKLRQAAKIE 277 >gi|206890921|ref|YP_002247897.1| hypothetical protein THEYE_A0043 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742859|gb|ACI21916.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 196 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 9/203 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +RK ++ + ++ + F+ WG+ V V QK+ F ++ Sbjct: 1 MIKTLRKNAKYF--YFLFFLVIITFVFWGVG--TVDKPKVEYVADVDGQKISAERFWRNY 56 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ + + GL +K+L++L++ L + +EA V I Sbjct: 57 EEIRRFYREVFK---DKAAEMEQGLKEKVLEDLINEEILLWLAKKYEIEATDKEVQDAIV 113 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 P F ++ F D++ L +N +Y + ++ + + S + Sbjct: 114 NDPRF-MRNGIFQRDIYFQILKLNRLNPAQYEASLKREITIGKTIQVIAFSKGASEISDS 172 Query: 181 -QAKRFYFENRSVDYIVLNNRHV 202 K F RS I +N + Sbjct: 173 VYIKAFLNSIRSQIKIKINKEAL 195 >gi|163850906|ref|YP_001638949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] gi|163662511|gb|ABY29878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens PA1] Length = 300 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 76/185 (41%), Gaps = 6/185 (3%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y R +L D E+E K ++ + +A YE+ + E ++ ++ EA + Sbjct: 117 YFRDKLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAA 176 Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F ++A ++ G LG FS+E + AD+ F + G + + Sbjct: 177 RVKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKP-FADAAFKMT-PGQVSDPVKT 234 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + V + +F E+K+ I + + + + + + A T+ Sbjct: 235 QFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVERAGSTATPAA 294 Query: 405 SRREK 409 +K Sbjct: 295 GETKK 299 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 12/228 (5%) Query: 400 SMDEISRREKIVSIDLPLVDFAGK-DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 + +++ + ++ LP VD K ++ + + Q D P K Sbjct: 59 TAADLAIAAEDPALSLPGVDEGAKQNLLVDYMVDLKVGAQAAESAEVGDAPEFKRKLAYF 118 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEY 510 D + E + E ++ K++K EEV ++ + + Sbjct: 119 RD-KLLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAAR 177 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGL 569 K G++F I + + + + + F V P++ Sbjct: 178 VKGGEDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQV-SDPVKTQF 236 Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + V +V + PV D+ + Q + + I L+ V Sbjct: 237 GWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284 >gi|222087317|ref|YP_002545854.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Agrobacterium radiobacter K84] gi|221724765|gb|ACM27921.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Agrobacterium radiobacter K84] Length = 300 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 15/245 (6%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + S+D +L D + F Sbjct: 39 EIHQSELDLAIANLDPQLGQLPDDQKKVAALSASIDVKLLAKDAAAEKLDQTPD-----F 93 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + + R E + I++DE++A Y+K E ++ Sbjct: 94 QSHMAYLRDRELHNAYFKAHVADG------ITDDEVKARYDKEVAALPKQEEVHARHILV 147 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAK 334 + EA + L GK F LA+E+ LG F+ + D+ F+L Sbjct: 148 KTEDEAKAIIKELDAGKDFATLAKEKSTDPNKADGGDLGYFAHGRMVK-EFEDAAFALPV 206 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + FG+ + V + + + F +VK + + K E + + + + Sbjct: 207 GTYTKTPVKSDFGWHVIKVEDKRVAPPPPFDQVKDQVRQLVMRDKYLELLNKAKQNTKVA 266 Query: 395 LALGT 399 ++ Sbjct: 267 ISDPA 271 Score = 50.8 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 8/155 (5%) Query: 480 EEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDIGKNLGASLLTT 531 +EV K+ + EEV ++ + +++ GK+F + K Sbjct: 121 DEVKARYDKEVAALPKQEEVHARHILVKTEDEAKAIIKELDAGKDFATLAKEKSTDPNKA 180 Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 + + + + F+ PV P+++ + V KV + +V P D+ Sbjct: 181 DGGDLGYFAHGRMVKEFEDAAFALPVGTYTKTPVKSDFGWHVIKVEDKRVAPPPPFDQVK 240 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + Q++ +D ++ K V + D + + Sbjct: 241 DQVRQLVMRDKYLELLNKAKQNTKVAISDPALSKA 275 >gi|218673531|ref|ZP_03523200.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein [Rhizobium etli GR56] Length = 293 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 17/226 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + ++D +L + D + Sbjct: 36 EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAITEKLDQTEE------ 89 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ L + + K+ ++ ++ +E++A Y+K E ++ Sbjct: 90 ------FKKRMQYLSDRELHNAYFKKHVVDTVTPEEIKARYDKEVAALPKQEEVHARHIL 143 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 + EA E + L GK F +LA+E+ + LG FS+ + D+ F+L Sbjct: 144 VKTEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 K + FGY + V + + + F +V+ + + K Sbjct: 203 KGTYSKTPVKTDFGYHVIKVEDKRDAPPPPFDQVQDQVRQLVMRDK 248 >gi|289423524|ref|ZP_06425325.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L] gi|289156026|gb|EFD04690.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L] Length = 252 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQ 298 ++ +E+S++E YE+NK ++ SPE+ + + ++ + +A E + KK F Sbjct: 87 NKIIASVEVSDEEKLNYYEENKAQFVSPEMVSAKHILVDEEDQAKEIKTKIDKKEMSFED 146 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A E K S LG F K + ++ F+L + G + + FGY I V + Sbjct: 147 AAVEYSKCPSNMKGGDLGEFGKGQMV-PEFEEAAFAL-EVGKVSEPVKSQFGYHIIKVES 204 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K + F++VK ++AN + K +E L + Sbjct: 205 HKEEGQLEFEDVKDEVANAVAYKKQNEAFVGKLTELTD 242 >gi|322421262|ref|YP_004200485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] gi|320127649|gb|ADW15209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18] Length = 342 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 75/361 (20%) Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93 L S + V V + + + + K L +++ V E R+ + K+ ++ L Sbjct: 39 LREGSPTDPVQKVNGKVITRAEVDRAVKALLD--QKQLRQPVALEELRA--VKKEAMEQL 94 Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 VS L Q + + +V IAR S + F + G+ Sbjct: 95 VSSELLYQAAQKTDIGDVEQKVAQVIARDRA-RYP----SDEAFARSVKEAGLTLPMLQQ 149 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 K ++ +D + G A + Sbjct: 150 LIRKEMAVSDFIETMFG---------------------------------ARINVGEDEA 176 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 ++E +D ++ R S IL V + + +AE Sbjct: 177 RSFYEANRDRFKTGSSVRASQILVMVPGPSQDRDRERARERAEI---------------- 220 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 +K+G+ F LA+ S LG F+K + D L ++F Sbjct: 221 ------------LLHRVKEGENFGILAQSHSDCPSKARGGDLGFFNKGKL-DPGLEQAVF 267 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L K G+ + ++ SFG+ I ++ + +++E + +I + ++ K V E + Sbjct: 268 AL-KPGEISDIVQTSFGFHILKLTEKRGPRLETYEEARPEIYSYLKREKMLRLVAEYVAK 326 Query: 391 L 391 L Sbjct: 327 L 327 >gi|290770008|gb|ADD61774.1| putative protein [uncultured organism] Length = 712 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 95/727 (13%), Positives = 208/727 (28%), Gaps = 136/727 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + F + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G S+ ++ + ++ V+ ++ E +GL + I Sbjct: 61 EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157 + F F D+ L + + +Y ++Y K Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYNSMYNFWSFVEK 178 Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179 L + + F + S+LLL Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW---FEKYKDNYR--- 225 + R Y E R++ YI + P + ++ + +Y Sbjct: 239 LKDAYNKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLAENPSDYSNFI 298 Query: 226 -----APEYKRISYI----LFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266 +Y + Y DV + +++ S++ + + K Sbjct: 299 RSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSF--KKLASAAM 356 Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ + A D + ++K G F ++A++ G++ + IS ++ Sbjct: 357 PDSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416 Query: 319 YIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + +L + + + + + G VI V N K VK + Sbjct: 417 QVDGDNLKYIAAITTLGQNELANLALGQAN-VILQVMNKKA--------VKDKYKVAVIK 467 Query: 378 ---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + E + Y +F+A ++D++ + L +D + + Sbjct: 468 RPVEFSKETYSKAYNDFSQFIAANNTLDKLVANAEDAGYRL--LDRTDLYSSEHAIGGVK 525 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 ++ L F M V + IP R L V ++ + K Sbjct: 526 GTKEALRWAFAAKAGEVSGLYECGESDHMMVVAVTNIIPEGYRPLSMVQEQLRSEILRDK 585 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 KA +++ + G D + + S+ + Sbjct: 586 -------KAEKIMADMKAAGATTFDQYKNMANAVSDSVKHVTFAAPAYVPALRSSEPLVG 638 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 S PI+ V + + + + M+ + + + L Sbjct: 639 AYASIAELNKLSAPIKGNGGVFVLQPYAKEKLNETYNQETEEATLEGMHARIANQFMNDL 698 Query: 611 KSQYSVT 617 +V Sbjct: 699 YLNANVK 705 >gi|16078059|ref|NP_388876.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis str. 168] gi|221308834|ref|ZP_03590681.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. 168] gi|221313157|ref|ZP_03594962.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318081|ref|ZP_03599375.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. JH642] gi|221322356|ref|ZP_03603650.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. SMY] gi|131027|sp|P24327|PRSA_BACSU RecName: Full=Foldase protein prsA; Flags: Precursor gi|39782|emb|CAA40543.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168] gi|2226124|emb|CAA74418.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168] gi|2633331|emb|CAB12835.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis str. 168] Length = 292 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 26/205 (12%) Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY--------KRISYILFDVHEKE 243 ++ + + S+ L ++ + D Y A E +++ Y L + Sbjct: 57 LVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLKEQVKYELLTQKAAK 116 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 I++++ +++ +E K K ++ ++K A+E + LKKG+KF LA+E Sbjct: 117 DNIKVTDADIKEYWEGLKGKI------RASHILVADKKTAEEVEKKLKKGEKFEDLAKEY 170 Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S LG F+KE D + + + F L K G+ + + +GY I + + Sbjct: 171 STDSSASKGGDLGWFAKEGQMDETFSKAAFKL-KTGEVSDPVKTQYGYHIIKKTEERGK- 228 Query: 361 TVSFQEVKKDIANQMRITKASEKVK 385 + ++KK++ +++ K ++ Sbjct: 229 ---YDDMKKELKSEVLEQKLNDNAA 250 >gi|222053408|ref|YP_002535770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] gi|221562697|gb|ACM18669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. FRC-32] Length = 296 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 17/164 (10%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLK 291 +E+ + EL+ Y+++++ + PE V + F K+A ++ + LK Sbjct: 114 ANVEVPDAELKKYYQEHEKDFVVPERVKVRHIYFAAAKDATAEVKAQARAKAEKIAEQLK 173 Query: 292 KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG F +LA E + + LG + + FSL K G+ +PV+ FG Sbjct: 174 KGGDFAKLAGENSEDTESAANGGDLGYLTPGKTNSEEFEKAAFSL-KAGEVSPVVETPFG 232 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 Y I V + T +F+E K I++ ++ +K +E + Sbjct: 233 YHIIKVDERQEKRTATFEETKDYISSTLKAQLEEKKAREFLDAV 276 Score = 36.9 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 11/143 (7%) Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 A + + + + +++ E L G +++ + G GK Sbjct: 149 AAKDATAEVKAQARAKAEKIAEQLKKGGDFAKLAGENSEDTESAANGGDLGYLTPGKT-- 206 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 E+ F V P G Y +++ E R EE + K Sbjct: 207 ---NSEEFEKAAFSL-KAGEVSPVVETPFG-YHIIKVDERQEKRTATFEETKDYISSTLK 261 Query: 492 TVKTAEEVSSKANQLVLEYSKEG 514 A+ KA + + +KEG Sbjct: 262 ----AQLEEKKAREFLDAVAKEG 280 >gi|154685453|ref|YP_001420614.1| hypothetical protein RBAM_010190 [Bacillus amyloliquefaciens FZB42] gi|154351304|gb|ABS73383.1| PrsA [Bacillus amyloliquefaciens FZB42] Length = 283 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 16/205 (7%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240 + E + ++ + L + K Y ++ Y L Sbjct: 54 LTQLVQEKVLAKKYKVTDKEIDTKLKEYKTQLGDQYSSLKQQYGEDYLKDQVKYELLAQK 113 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I++++ + + Y+ K K ++ ++K ADE + LKKG+KF LA Sbjct: 114 AAKDNIKVTDSDTKEYYDGLKGKI------RASHILVADKKTADEVEKKLKKGEKFETLA 167 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +E S LG F K+ + D + + + F L K G + + FGY I + + Sbjct: 168 KEYSTDSSKDNGGDLGWFDKKSM-DETFSKAAFGL-KVGQVSDPVKTKFGYHIIKKTEER 225 Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382 + ++KK++ ++ K ++ Sbjct: 226 GK----YDDMKKELKEEVLKQKLND 246 >gi|296445011|ref|ZP_06886972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] gi|296257432|gb|EFH04498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] Length = 294 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K ++ D ++ Y++ + ++ P + EA A + +K G+ F ++A+E Sbjct: 119 AKDAVTEDAIKKTYDEAAKNQKPETEVHAHHILVPTEDEAKAALKRVKGGEDFGKVADEV 178 Query: 304 GKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+K+ + A++ + L + G + + FG+ + + +P Sbjct: 179 SKDPGARGGDLGWFTKDRMV-PEFAEAAYKL-EPGQISDPVKTQFGWHVIKLDEKRPKVF 236 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389 +V++ ++ + S+ + + + Sbjct: 237 PPLDQVREQVSRYVAQKAQSDLIVQLRE 264 >gi|189218309|ref|YP_001938951.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum infernorum V4] gi|189185167|gb|ACD82352.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum infernorum V4] Length = 332 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 99/343 (28%), Gaps = 67/343 (19%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 V + + FS + ++ + R + L L L+ Sbjct: 27 GSDGIAAIVNDKVITFSQVRKQVEPNEAVLRETYQGSELVNRIKEARL--SALRALIDRE 84 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGINEKEYIDHY 155 + Q + + + +F D F+ L GI+E++Y Sbjct: 85 LIIQDFKSKKYAIPDSFIESRVRDI-----IRTQFDGDRIAFIRTLQASGISEEQY---- 135 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + L +V ++V S + + Sbjct: 136 KQQLLEQIIVQAMR-----------------------------MKNVSEPVIISPYQIEK 166 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ + + P ++ I + K N +L+ Sbjct: 167 YYQDHIAQFFEPPQVKLRIIFLQKTSFKDKRATVNGQLEEY------------------- 207 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSL 332 P ++ A E L+ G F +LA + LG +K+ + +A++ FS+ Sbjct: 208 -DPARETATELLSKLQLGADFAELARSYSEGPKRMDGGDLGWVTKDSL-RPEIAEAAFSM 265 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 G + VI GY I + + + EV+ I + Sbjct: 266 Y-PGQTSGVIETLDGYYIIRLEDKRKGKLKPISEVRTQIEGLL 307 >gi|312112916|ref|YP_004010512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] gi|311218045|gb|ADP69413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium vannielii ATCC 17100] Length = 283 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 5/212 (2%) Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + KD Y ++ + +EK+ + I++ + +A Y++ K Sbjct: 73 EAAKDKLDAAKDFEERAAYYKLRALRDTFYEKKVRDAITDAQAKAAYDEQIAKLKPEPEV 132 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 ++ ++EA + + LK G F +LA++ S LG FSK + V D Sbjct: 133 RARHILVKTKEEAADLVKQLKGGADFNELAKKSADGPSANTGGDLGYFSKGQMVKV-FED 191 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + F+L + G + + FG+ + V + + SF EVK I + + E V++ Sbjct: 192 TAFAL-QPGQISDPVQSEFGWHVIKVEDKRNRPVPSFDEVKDQIVASLVQNQLRETVQKL 250 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + + I K +I+ Sbjct: 251 RSSAKVEIVDPELKKAIEEDAKAAAIETTTQQ 282 Score = 36.9 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 6/145 (4%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 +V+ VKT EE + QL K G +F ++ K + Sbjct: 130 PEVRARHILVKTKEEAADLVKQL-----KGGADFNELAKKSADGPSANTGGDLGYFSKGQ 184 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603 F+ + P+++ + V KV + + PV D+ + + ++ L Sbjct: 185 MVKVFEDTAFALQPGQI-SDPVQSEFGWHVIKVEDKRNRPVPSFDEVKDQIVASLVQNQL 243 Query: 604 DSVIAYLKSQYSVTVHDNLIQRYLD 628 + L+S V + D +++ ++ Sbjct: 244 RETVQKLRSSAKVEIVDPELKKAIE 268 >gi|328552623|gb|AEB23115.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens TA208] gi|328911027|gb|AEB62623.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens LL3] Length = 285 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 16/205 (7%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240 + E ++++ + L + K Y ++ Y L Sbjct: 54 LTQLVQEKVLAKKYKVSDKEIDNKLKEYKTQLGDQYSALKQQYGEDYLKDQVKYELLAQK 113 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + I++++ + + Y+ K K ++ ++K ADE + LKKG+KF LA Sbjct: 114 AAKDNIKVTDSDTKEYYDGLKGKI------RASHILVADKKTADEVEKKLKKGEKFETLA 167 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +E S LG F K+ + D + + + F L K G + + FGY I + + Sbjct: 168 KEYSTDSSKDNGGDLGWFDKKSM-DETFSKAAFGL-KVGQVSDPVKTKFGYHIIKKTEER 225 Query: 358 PSFTVSFQEVKKDIANQMRITKASE 382 + ++KK++ ++ K ++ Sbjct: 226 GK----YDDMKKELKEEVLKQKLND 246 >gi|193214213|ref|YP_001995412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton thalassium ATCC 35110] gi|193087690|gb|ACF12965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton thalassium ATCC 35110] Length = 699 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 203/628 (32%), Gaps = 64/628 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 + +R S V + + + WG+ D + V + + + + ++ Sbjct: 1 MNKMRD-SMHIVLYALVGAFVLLIVFEWGM-DFTGLNRRKTDAGVVNGKPISLTEYDATY 58 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 ++ L Q+ V SE+ + + + D LVS LD E++GL + E+ Sbjct: 59 RRYLDGFRQRSNNVEISEQMDAR-MRDQAWDFLVSQILLDDKYEELGLFVTDEEIVSEVM 117 Query: 121 RS-------PLFHGK-DNKFSHDVFVSRLAREGINEK--EYIDHYTKMLSRTDVVGMFVG 170 F K + + + +A E + D + L + + + Sbjct: 118 SDDPPAIIAQQFRDPKTGKINTEALQAAIASPENKEAWIQVEDIIRQELLFKKLQNLVMS 177 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYRAPE 228 G+ ++ + S YI+ H A + + + A + +F ++K++Y+ Sbjct: 178 GVFVTDDEARRLFDEQNTKVSGRYILFELAHAKADSLYEITEADIRNYFNEHKEDYKQDP 237 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + ++++F + E+ + E K K+ + + D F Sbjct: 238 VREANFVMFSTAATTEDT----LEIIHDLEALKPKFQT--------------AKNDTEFV 279 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 L+ +F + D S+ + + SL K GD Y Sbjct: 280 ELQS-DRFADFVKTYRPGKLDAK---ISRLFFDNPSL--------KVGDVVGPFQEFSEY 327 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + I + + + V + K+L L E++R + Sbjct: 328 KIVKILAIDSDEDRQAHASHILLKPEGARRADTLAVMAEAKQLMRELTSDEKFAEVAREK 387 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 G KG+ V +++ + G+ + +++ Sbjct: 388 SDDPGSAQKGGDLGWFGKGRMVKE--FEDAVFHAKPGQIVGPIQSQF------GIHIIKV 439 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 R E V +K T E V+ +A++ ++EG F K + Sbjct: 440 HGFEDRAIRGAELVR-KIKAG---PATLERVNRQADEFQYFATEEG--FEKTAKQDSVEI 493 Query: 529 LTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587 T + + + F + F V V I ++V+ ++T ++ Sbjct: 494 QKTGEFTKNGFIPSIGFNRSVSNFAFHEEVGAV-SPVISTQDAFVIMQLTGKNDDGYRKL 552 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYS 615 D+ + + K L + +A L+ + Sbjct: 553 DEDLK--NTIREKVLREKKMADLREKAK 578 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + S +G + I G IA ++ F F+ K + +Q+ K E + Sbjct: 624 AALSALDEGKVSNPIETKRGVAIAELTKKIKGFDSDFEVRKNALKDQILQEKKKEVMNNW 683 Query: 388 YKRLEE 393 K L+E Sbjct: 684 LKDLKE 689 >gi|52079482|ref|YP_078273.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580] gi|52784844|ref|YP_090673.1| hypothetical protein BLi01072 [Bacillus licheniformis ATCC 14580] gi|319646731|ref|ZP_08000960.1| PrsA protein [Bacillus sp. BT1B_CT2] gi|52002693|gb|AAU22635.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580] gi|52347346|gb|AAU39980.1| PrsA [Bacillus licheniformis ATCC 14580] gi|317391319|gb|EFV72117.1| PrsA protein [Bacillus sp. BT1B_CT2] Length = 286 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 105/254 (41%), Gaps = 20/254 (7%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +++ D+ L + ++ + V ++ + + L Q + Sbjct: 36 ITKEDLYQTLKDNAGADALNMLVQQKVLDDKYDVSDKEIDKKLNEYKKSMGD-QLNQLID 94 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + +++ ++I Y L + I++++D+++ Y+ K K + ++ Sbjct: 95 QKGEDFV---KEQIKYELLMQKAAKDNIKVTDDDVKEYYDGLKGKI------HLSHILVK 145 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K A+E + LKKG+KF LA+E G + LG K+ D + F+L K Sbjct: 146 EKKTAEEVEKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFAL-KT 204 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + + FGY I + ++++KK++ +++ K +++ + + + + L Sbjct: 205 GEISGPVKSQFGYHIIKKDEERGK----YEDMKKELKKEVQEQKQNDQ--TELQSVIDKL 258 Query: 396 ALGTSMDEISRREK 409 + + K Sbjct: 259 VKDADLKVKDKELK 272 Score = 40.7 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 4/135 (2%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 K + V + K+G+ F D+ K ++ D + F+ Sbjct: 146 EKKTAEEVEKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFALKTG 205 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616 + P+++ Y + K + K + + + D L SVI L + Sbjct: 206 EI-SGPVKSQFGYHIIKKDEERGKYEDMKKELKKEVQEQKQNDQTELQSVIDKLVKDADL 264 Query: 617 TVHDNLIQRYLDGEK 631 V D +++ +D + Sbjct: 265 KVKDKELKKQVDQRQ 279 >gi|257459731|ref|ZP_05624840.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268] gi|257443156|gb|EEV18290.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268] Length = 274 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GK 294 E+ K + +S++E + Y++NK+ + P+ T ++ ++K A A L K + Sbjct: 105 EQAKDVSVSDEEAKKIYDENKQNFMQPDSVTASHILVADEKAAKNAIAKLSKVKKENLKE 164 Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYV 349 +F +LA+E S LGSF K + + F+L K G+ + + FGY Sbjct: 165 EFNKLAKEISIDPSAKENGGDLGSFGKGMMV-PEFEKAAFAL-KDGEMSKTPVKTQFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + K + T+ F++VK I NQ+ +K ++K+ + L Sbjct: 223 VIYKESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANEL 264 Score = 37.7 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 47/282 (16%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 K+ I I+++++ + + P E + L K K I Sbjct: 24 ATAKDANITITDEDVAPFLAQGMQHGGQE----------PTADEKKKLIDDLIKYKLLIA 73 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 A++ G SD ++ +++ F+L ++ V I Sbjct: 74 EAKKSGIENSD------EYKHQLELAKDGIAFNLWQREQAKDVSVSDE-----EAKKIYD 122 Query: 359 SFTVSFQE----------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 +F + V + A + I K S+ KE+ K LA S+D ++ Sbjct: 123 ENKQNFMQPDSVTASHILVADEKAAKNAIAKLSKVKKENLKEEFNKLAKEISIDPSAKEN 182 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468 + GK + + F D V G ++ + Sbjct: 183 G------GDLGSFGKGM---------MVPEFEKAAFALKDGEMSKTPVKTQFGYHVIYK- 226 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + S A E+V +K K +++ KAN+L + Sbjct: 227 ESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANELFGKL 268 >gi|332826777|gb|EGJ99594.1| hypothetical protein HMPREF9455_04090 [Dysgonomonas gadei ATCC BAA-286] Length = 702 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 88/717 (12%), Positives = 221/717 (30%), Gaps = 120/717 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S V I + +L F ++ + + + V V + + + + Sbjct: 4 LQKIRSKSGLLVGIIAVGLLAFVFPWGEVTTFVNKMRDKAFV--VDGKVITTKEYSDKIA 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120 Q + + + + + + + +V LD+ +GL + + Sbjct: 62 QW-ENFQKIMSNQSSLDEFTNSQIREMAYQQMVKEIMLDEEAGRLGLAVTPEELNDMVYG 120 Query: 121 --------RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYID-HYTKMLSRTDV------ 164 + P F +F + L+ + + H +++++R ++ Sbjct: 121 PVVAPILYQIPFFANPQTGQFDKAYLMQFLSDINQDPTTMQEPHRSEIMARREIWAFIQN 180 Query: 165 -----------VGMFVGGMRPSNLLLDQAK------------------------------ 183 + G + S+ A Sbjct: 181 MMKYQRLEEKYASLVAGSVLVSDTEAKAAYGDSKNVADIAYVVQRYSTLADSAVQVSDKE 240 Query: 184 ------------RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---------D 222 + E R + Y + + + +EK K Sbjct: 241 IKALYDLRKNNYKLDTELRKISYFIKDVVPSDEDYAAIEQEMNAAYEKLKMTDNPAIVLS 300 Query: 223 NYRAPEY---KRISYILFDVHEKEKKIEISN------DELQAEYEKNKEKYFSPEIRTVE 273 Y + ++ + D + + + ++ K ++ + + ++ Sbjct: 301 EYSSTYQDIFMAVTSLPADAKTFVESASVGDIFGPVREDQTYLMYKLIDRTNAADSIKLQ 360 Query: 274 QLVFP---NQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326 + P ++K + D LK GK F +A+E + + LG ++ + +A Sbjct: 361 IIPLPQGLDEKTSAHIVDSIQSVLKGGKDFGAVADELFPNSNGGDLGWTNEAMLASAGIA 420 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 F+ AK G+ + G +I P V ++ + + A + Sbjct: 421 KECFAAAK-GEVLKLKVGGQDQLIRIADKTNPVPKVKLAVIQLPVIISDKTQNAID---- 475 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 L +F++ +++ + + L + + + Q++ F Sbjct: 476 --NELNQFVSENGNLENFDKAAQAKGYSL--IQNSIISPSEIALGQATGTRQVIHWAF-- 529 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 ++ + + D + + E + EV T +K + K KA ++ Sbjct: 530 NEKVGSVKKFDMSDKRVVAIVKNEIT-GDYMPVSEVATALKTELINDK-------KAEKI 581 Query: 507 VLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-CFP 564 + + +K + + + + T N + N GY+ + V+S ++ K P Sbjct: 582 IADLKAKNLTSLDAYAQAVSGKVDTVNFVTFQTNNLSGIGYEPLMNVYSKLGQVNKLEAP 641 Query: 565 IENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 ++ V VTN + ++ L Q ++ ++ L+++ +V + Sbjct: 642 MKGKSGVYVLNVTNKTEDTKEFNAEQTKQSLKQANYYQMMSQAVSILRNKMNVEDNR 698 >gi|229110311|ref|ZP_04239883.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15] gi|228673051|gb|EEL28323.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15] Length = 303 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 101/272 (37%), Gaps = 31/272 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + + + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQIKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEAQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D+ + L + G + + SFGY I +++ K ++E K +I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKDNIRKELEQQRIQD-- 270 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302 >gi|116254033|ref|YP_769871.1| foldase/peptidyl-prolyl cis-trans isomerase [Rhizobium leguminosarum bv. viciae 3841] gi|115258681|emb|CAK09785.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Rhizobium leguminosarum bv. viciae 3841] Length = 293 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 17/234 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++++ L D K+ + ++D +L D ++ Sbjct: 36 EIHQSELDLAVANLDPQLAQLPDDQKKVAALSAAIDVKLLAADAAAEKLDQTDE------ 89 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ L + + K+ ++ ++ DE++A Y+K E ++ Sbjct: 90 ------FKKRMQYLSDRELHNAYFKKHVVDIVTPDEVKARYDKEVAALPKQEEVHARHIL 143 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 + EA + + L GK F +LA+E+ + LG FS+ + D+ F+L Sbjct: 144 VKTEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVK-EFEDAAFALE 202 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 K + FG+ + V + + + F++V+ + + K E + + Sbjct: 203 KGTYSKTPVKTDFGFHVIKVEDKRDAPPPPFEQVQDQVRQLVMRDKYLELLNKA 256 >gi|163743876|ref|ZP_02151247.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10] gi|161382817|gb|EDQ07215.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10] Length = 172 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 5/159 (3%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S+++L+ Y++ + ++ +++A + L G F LA E+ S Sbjct: 6 SDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPS 65 Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG FSK + +++ + GD + + FG+ + +++ + S +F Sbjct: 66 GPNGGELGWFSKGRMV-PEFEEAVLVMG-AGDVSDPVQTQFGWHVIKLNDRRTSAAPTFD 123 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 EV++++A QMR ++V +D Sbjct: 124 EVREELATQMRQEAVEDRVLSLTTAATIERPEIEDLDPA 162 >gi|34557645|ref|NP_907460.1| cell binding factor 2 precursor major antigen PEB4A [Wolinella succinogenes DSM 1740] gi|34483362|emb|CAE10360.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Wolinella succinogenes] Length = 271 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KKG 293 + ++ ++S +++ Y++NKEK+ PE+ + ++ N+KEA E + K Sbjct: 103 MRQQMNNAKVSEGDMRKFYDENKEKFVQPELVKAKHILVQNEKEAKEVIAEIGKAGAKAS 162 Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 +KF +LA+ + + LG FSK+ + A++ F+L K + FGY + Sbjct: 163 EKFSELAKSKSIDPAGQNGGELGWFSKDQMV-PEFANAAFALQKGSYSKTPVKTQFGYHV 221 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + K + +++VK I ++I K + V K+L E Sbjct: 222 IYAEDKKAQAVLPYEDVKPQIEQNLKIQKFRDSVSSTAKKLREK 265 >gi|71083623|ref|YP_266342.1| SurA-like protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062736|gb|AAZ21739.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique HTCC1062] Length = 473 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 162/478 (33%), Gaps = 68/478 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ + S+ + + L+ + + +G FS + + + + F++ + Sbjct: 1 MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMD-Y 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E G+ Q I ++ + +++L LVS LD IE++ L + +I Sbjct: 60 LNESGLSQQVIKENID------KNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIK 113 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + FH ++ F ++ L + + + + GG + L++ Sbjct: 114 NNKNFHDENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLIN 173 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + ++YI L+ ++ + + E+ E + YI F Sbjct: 174 KFYKENNKKLDIEYIDLST-FYKKKEMFTDNDIKFFVEENA------EKLKQDYIDFSF- 225 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 +EIS L + N+ + + D+ + K F + Sbjct: 226 -----VEISPKNLLGIDDFNQAFF----------------DKIDDIENQISKNIDFKTIV 264 Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + S ++++ + +K+ I ++ D I L G + I + N Sbjct: 265 KNLDISPTEVNSYINLDNKKIIENMIYNSREDKIEILENNGAY-----------IFYNIN 313 Query: 356 IKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 S + +K+ I N + + E K +++ + S DE + I I Sbjct: 314 NSISKLPDLENPIIKEQITNLLFQKEKLEFNKNILEKINKKTFNQVSFDEFGKN-NIKEI 372 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 L ++ K Q+L+ + P++ +A + + + Sbjct: 373 KLDSINDTKKFETN--------SIQILYSL-----PINSFTLIANNENDVFIAKTIKY 417 >gi|299143243|ref|ZP_07036323.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517728|gb|EFI41467.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 331 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 47/359 (13%), Positives = 114/359 (31%), Gaps = 95/359 (26%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIG--------FVVNSERARSVGLDKKILDNLVS 95 +V + ++ + + G N ++ + + L N++ Sbjct: 2 ATVNGTDLTEKDYVMQYAAQRNQYVLTAGSEDVLSQPSADNPKKTVDQAIKENTLKNMIQ 61 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 + Q + D +V EI + +++ +L G + Y + Sbjct: 62 MELVKQDAAKSNIAVDQSKVDEEIKAII---TQMGG--EEIYKQKLEALGSTPEFYKSYL 116 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 T++ Q + Y+E + ++ +P++ + + Sbjct: 117 TEL----------------------QLMKSYYETKIKEF------------EPTDEEIQK 142 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++K KDN+ + Sbjct: 143 YYDKNKDNFF-------------------------------------------KAKASHI 159 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLA 333 + +EA++ + L KG F ++A+E K + G E+ +A+ + + Sbjct: 160 LVETVEEANKLKKELNKGADFAEMAKENSKDPGSAANGGSLGEFKNGDMVAEFNDVVKIL 219 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G+ + + FGY I V + EVK+++ Q+ K ++ +++ K + Sbjct: 220 KVGEISDPVKSKFGYHIVKVDEK---SARTLDEVKEELKQQLTQAKFTDYIEKMQKDAK 275 >gi|260432023|ref|ZP_05785994.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415851|gb|EEX09110.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 282 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 5/149 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++++D +QA Y+ ++ + ++ ++EA E L G F +LA+E+ Sbjct: 112 DAQVTDDAIQAAYDAQFAEFQGEDEFNASHILVATEEEAKEIKAQLDDGADFAELAKEKS 171 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S +LG F K + ++ L +KG + + FG+ + +++ + S Sbjct: 172 TGPSGPNGGALGWFGKGQMV-PEFEQAVIGL-EKGQVSDPVQTQFGWHVVILNDKRKSEA 229 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 EV+ ++A +R K+ E + Sbjct: 230 PELAEVRDELAQSVRQEAIQAKIDELTQA 258 >gi|229070337|ref|ZP_04203584.1| Foldase protein prsA 1 [Bacillus cereus F65185] gi|229080050|ref|ZP_04212578.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2] gi|228703174|gb|EEL55632.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2] gi|228712775|gb|EEL64703.1| Foldase protein prsA 1 [Bacillus cereus F65185] Length = 303 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 103/272 (37%), Gaps = 31/272 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD-- 270 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302 >gi|39995126|ref|NP_951077.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39981888|gb|AAR33350.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] gi|298504156|gb|ADI82879.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family [Geobacter sulfurreducens KN400] Length = 321 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 112/363 (30%), Gaps = 78/363 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S + V + V + + L ++ A LD+ L+ L+ + Sbjct: 26 SRILAVVNDEIVTSYAVDKEKRALLKEAERQQPPPDPKSLA---NLDEVALNRLIDKKLV 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q I ++ + V I + NK S + V+ LA +G++ +Y + L Sbjct: 83 EQKIRELDIRVGEEEVRQAIEDV----KRQNKLSQEALVAALANQGLSFDQYKAQIKEQL 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R +V V + + +++E Sbjct: 139 ERLRLVSQ---------------------------------EVRSKIQVGEREMREYYEA 165 Query: 220 YKDNYRAPEYKRIS--YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 K + A + R Y D ++++ Sbjct: 166 NKAKFGAEDIFRARNIYFKLDDKMSAEQVK------------------------------ 195 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLA 333 A + GK F +LA + + LG+F K I + + + Sbjct: 196 KVMTTAMTVLHEAQSGKDFAELARQYSDDPAAKGNGGDLGTFRKGDIL-PEFEEQLTRM- 253 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + G+ + +I+ + G I + F++VK ++ + + K+ ++ + L + Sbjct: 254 QPGEVSDLIYTATGLHIVKLEERSLGTPKPFEQVKAEVEDLVYRKKSEDRFNQWVADLRK 313 Query: 394 FLA 396 A Sbjct: 314 GAA 316 >gi|15643674|ref|NP_228720.1| basic membrane protein, putative [Thermotoga maritima MSB8] gi|4981448|gb|AAD35993.1|AE001755_16 basic membrane protein, putative [Thermotoga maritima MSB8] Length = 329 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 49/395 (12%), Positives = 119/395 (30%), Gaps = 86/395 (21%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIGF 73 IF+++ + ++G + + S+ V V + + L I+Q Sbjct: 5 IFVILAVLGISLFG----QATTTSSTVVAIVNGEPITSDLLELEADIDGILRSIAQIDMR 60 Query: 74 VVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 N GL +++L++L+ + Q E G+ V E+ Sbjct: 61 FFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLIQQLAEKEGVGVSDEEVKKEV-------- 112 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + GI ++ G + Sbjct: 113 ------EARLKETVESMGITLEDLDKFLQ------------SAGYGDLETFKKRLHWHVK 154 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 S+ + + A + ++ + K+ YR P + Sbjct: 155 TQLSLQRL---QEKITQNATVTLEEAQNYYNQNKETYRIPAAVHLY-------------- 197 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 ++ ++ + DE ++KG+ F+++A + Sbjct: 198 --------------------------RITTEDKSKMDEVLSKIRKGEDFLEVATQV---A 228 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + LG + + + + IF + G +V+ V + S F+EV Sbjct: 229 TGGDLGWIEEGKL-EKDIESVIFDAPE-GAILGPFESEGKFVLYKVVEKRSSSYKKFEEV 286 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 K++I +++ K ++ + + ++ E + ++ Sbjct: 287 KQEIMDKLLADKRNQLWNDWFNKVFEEFKKNSHIE 321 >gi|325297347|ref|YP_004257264.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM 18170] gi|324316900|gb|ADY34791.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM 18170] Length = 711 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 85/717 (11%), Positives = 208/717 (29%), Gaps = 117/717 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F+ L G V V +K+ + Sbjct: 4 LQSIR--SKGPLLVIVIGLALFAFIAGDAWKVLQPHQGRQDVGEVNGEKLSAQEYQQLVD 61 Query: 62 QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119 + +I G + ++ + ++ + V+ + E +GL+ + I Sbjct: 62 EFSEVIKLTNGLNSLTEDQL--TNVKDQVWNTYVTNQLIASEAEKLGLKVTDKELQAIID 119 Query: 120 -------ARSPLFHGKDNKFSHDVFVSRL---AREGIN--EKEYIDHYTKM--------- 158 ++P + + F D+ L A G + +Y+++Y M Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVEYANLGSSQMPAQYVEYYQTMGNFWKFVEK 179 Query: 159 -----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAV 212 + + + + + + A + + + + + S++ Sbjct: 180 TLKASTLASKYQNLIAKSLISNPVAAEDAFKSRTAQSDILLAGVPYASISDSTITVSDSE 239 Query: 213 LTQWFEKYKDNYRAP-EYKRISYI-LFDVHEKEKKIEISNDELQA--------------- 255 + + + K+ Y+ P E + I +I + + + + + + Sbjct: 240 IKDLYNERKEAYKQPVETRDIQFIDVHVLPSDADRAAVLKEATEYSNQLDKTTGDYAAFI 299 Query: 256 --------------------------------------EYEKNKEKYFS---------PE 268 Y + + Y + P+ Sbjct: 300 RSTGSAVNYADFAINKTALPQDVVARLDSTSLNEVYGPYYNSSDDSYNAFKILAKTTAPD 359 Query: 269 IRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 Q+ E AD F ++K G F ++A+ G++ + + S E Sbjct: 360 SIQFRQIQVVADTEAKRTALADSIFDAIKGGADFAEIAKAYGQTGESTWVNAMSWESAAL 419 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + + + G +I V+ K +V ++ + + Sbjct: 420 DADNTTYIKTLINQPVNELKNLQLGQVNLIIQVTGKKA--MKPKYQVA---VIKLPVEFS 474 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 E + Y + +F+A T+++++ + + + D V + ++ L Sbjct: 475 KETYSDAYNKFSQFVAQNTTVEDMKKNAEEAGYTVIPRSDFRSDEHY--VGGVRSTQEAL 532 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 +F + + M V ++ + +V +K + K A ++ Sbjct: 533 RWIFDAKEGEVSPLYECGENDHMMVVGLERVNKKGYVNINKVANTLKAEIIRDKKAAQLM 592 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 S+ +G + + I+ IS S Sbjct: 593 SQMQGFNSLDQVKGMSNAVSDSVKHVTFSAPAYISVTHA-----SEPAISAYASKAETGK 647 Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 PI+ + + G + K M + + I L+ + VT Sbjct: 648 VSAPIKGNAGVYMIQAYAKDNGTEEFDAKKEEASLSSMAPNYANQCIYELREKAKVT 704 >gi|110799431|ref|YP_697171.1| peptidylprolyl isomerase [Clostridium perfringens ATCC 13124] gi|123049564|sp|Q0TMG9|PRSA_CLOP1 RecName: Full=Foldase protein prsA; Flags: Precursor gi|110674078|gb|ABG83065.1| putative foldase protein PrsA [Clostridium perfringens ATCC 13124] Length = 342 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 53/386 (13%), Positives = 114/386 (29%), Gaps = 73/386 (18%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 + VA + VL + + + + +TV +V +K+ + K + Sbjct: 4 VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMK 63 Query: 69 QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + G + + + + ++ LV+ L + +G++ + ++ F Sbjct: 64 SQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKV--DEQF 121 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 D F L EG E + D + V + Sbjct: 122 ENIKKGM-GDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYII---------------- 164 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 ++ +++++ K + A + ++ L + Sbjct: 165 ------------------KDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFEN----- 201 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +E Q Y++ + + ++ F + K + K Sbjct: 202 ----EEEAQKAYDEIQSGKTTF----------------NDLFTKYENNKS-------ENK 234 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSF 364 +LG E V K+G+ + I FGY I + + F Sbjct: 235 KPIAENLGVVPAENSGLVQEFVDGLKPLKEGEISKPIKTQFGYHIIQAGATYEKGAQLPF 294 Query: 365 QEVKKDIANQMRITKASEKVKEDYKR 390 +VK I ++ K SEK K D + Sbjct: 295 DDVKSQIIQILKQQKDSEKFKADMDQ 320 >gi|310829352|ref|YP_003961709.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612] gi|308741086|gb|ADO38746.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612] Length = 497 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 99/239 (41%), Gaps = 17/239 (7%) Query: 167 MFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY---- 220 + + L+ + + E +D + + + + ++ L Q+ E Y Sbjct: 226 SIFNSIAQNKALIKYCEEYNIEIKQEEIDNALQTKQSIQKMMFQTDDELNQYLENYFLTK 285 Query: 221 --KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D Y+ + + I+ + + +++S+ +L+ Y+ +K+ Y + E ++ Sbjct: 286 EKYDEYQKEDARGIAAGQAIQAKVTEDVKVSDTDLRKYYKDHKDSY-DESTVSAEHILTE 344 Query: 279 NQKEADEAFQSLKK---GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332 ++ A+E + K + F ++ E + LG+F+KE + +D+ F + Sbjct: 345 DEALANEIYDKAKDVKTKEDFEKIMNEYKSNEKVKEATDLGAFNKEKMV-SEFSDAAFGM 403 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K + + +GY I +V + + SF++ K +I ++ K +E + + L Sbjct: 404 EKNS-VSKPVKTEYGYHIIYVYDKNDAGEASFEDKKDEITKAVKEEKGTEDYNKLKEDL 461 >gi|228939979|ref|ZP_04102553.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972874|ref|ZP_04133469.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979455|ref|ZP_04139787.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407] gi|228780273|gb|EEM28508.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407] gi|228786747|gb|EEM34731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819591|gb|EEM65642.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 303 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 >gi|229151073|ref|ZP_04279281.1| Foldase protein prsA 1 [Bacillus cereus m1550] gi|228632384|gb|EEK89005.1| Foldase protein prsA 1 [Bacillus cereus m1550] Length = 303 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 >gi|229190961|ref|ZP_04317951.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876] gi|228592359|gb|EEK50188.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876] Length = 303 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 103/272 (37%), Gaps = 31/272 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKFKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD-- 270 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302 >gi|110803835|ref|YP_699739.1| peptidylprolyl isomerase [Clostridium perfringens SM101] gi|123047143|sp|Q0SQ68|PRSA_CLOPS RecName: Full=Foldase protein prsA; Flags: Precursor gi|110684336|gb|ABG87706.1| putative foldase protein PrsA [Clostridium perfringens SM101] Length = 342 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 122/393 (31%), Gaps = 87/393 (22%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 + VA + VL + + + + +TV +V +K+ + K + Sbjct: 4 VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFTQMK 63 Query: 69 QKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + G + + + + IL++LV L + + +I + Sbjct: 64 SQYGDKYMDDPQVAQQILQQRQGILNSLVEEKILVVEANKENIVPSEEELNKKIEQQIKL 123 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + + ++ + + + G NE + ++ + D A Sbjct: 124 YKE--QYGEEGYKKAVESMGYNEDTFKEYLKNQ------------------FIADAAA-- 161 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + ++ +++++ K + Sbjct: 162 --------------SNASKDIKVTDEEAQKYYDENKKQFE-------------------- 187 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-----FIQLA 300 + L+F N++EA +A+ ++ GK F + Sbjct: 188 -------------------VQAKGVLARHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYE 228 Query: 301 EEQGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-K 357 + + + I+ + V+ + + SL K+G+ + I FGY I + Sbjct: 229 NNKLEKKTPIAESFVVPDENAQVAKEFVEGLKSL-KEGEISKPIKTQFGYHIIQAGATYE 287 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + F EVK I ++ K S+K+K D + Sbjct: 288 KGAQLPFNEVKSQIIQILKQQKDSQKLKSDMDQ 320 >gi|291482444|dbj|BAI83519.1| hypothetical protein BSNT_00126 [Bacillus subtilis subsp. natto BEST195] Length = 297 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 60/381 (15%), Positives = 116/381 (30%), Gaps = 119/381 (31%) Query: 13 VAKIFLVVLFVPFLIWGLS---DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + I L L V + + + S ++ ++G + V ++ + + G Sbjct: 6 IWTIILGALLVCCIAVAYTLTKSQTGASSSGESIATIGGKSVTREEWLKEMEDQYG---- 61 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 K L+++++ ++Q + L+ V E + Sbjct: 62 -----------------KSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKA---VN 101 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 N F D E EKE+ D + +++ Sbjct: 102 NSFYED--------EHTTEKEWKDQIRYNILLEELL-----------------------T 130 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R +D SN L ++ K K+ Y+ + RI Sbjct: 131 RDIDI--------------SNKELESFYNKNKELYQFDDSYRI----------------- 159 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306 +V +++EA E + LK G F +A E+ Sbjct: 160 -----------------------RHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYT 196 Query: 307 -LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG ++ + IP + ++ +L + I + GY I + + T S Sbjct: 197 SPYGGDLGFVTEASDNIPSAYIEEAK-TLKEDEWSQEPIKVNNGYAIIQLKEKLKARTFS 255 Query: 364 FQEVKKDIANQMRITKASEKV 384 F EVK I Q+ + + +K Sbjct: 256 FDEVKDQIRRQIAMDQLGDKA 276 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 9/120 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442 +E+ + + + L G+S + ++ P G + + Y E+ L Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKE 226 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 +P+ + Y +Q+KE + AR +EV +++ + ++ + K Sbjct: 227 DEWSQEPIK-------VNNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVK 279 >gi|269925897|ref|YP_003322520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum terrenum ATCC BAA-798] gi|269789557|gb|ACZ41698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum terrenum ATCC BAA-798] Length = 398 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 56/387 (14%), Positives = 126/387 (32%), Gaps = 87/387 (22%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL----- 64 R ++ + + +L V +I + S T+ VG +++ + + K ++ Sbjct: 32 RLIISVVAIALLIVVLIIAVPLIKQYLWEPSRTLAVVGNERIRKADYDQYVKMQVLGITD 91 Query: 65 ----------------GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108 Q++ +NS + +D LD +++ L+Q +G+ Sbjct: 92 APESLASLYQVYKTDPESFPQRVKDAINSSMFSTSDVDAYTLDQMINNLVLNQTASKLGI 151 Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 +E +++S VVG Sbjct: 152 NISD------------------------------------QEVQAKIREIMS---VVGAS 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 A + P+ A L ++ N+ + Sbjct: 173 ATPTSLPTTTTPSATSTPQAKSTPR------------ITPTAATLPSDYQ----NFVSSL 216 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 K + + ++ Y + K S E V ++ +++A+E + Sbjct: 217 QKSAGISMDMYASML----VRPALIRQRYLETKVP-KSAEQVHVRHILVSTKQQAEEVIK 271 Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L++GKKF +A+E+ L LG + I + S D+ F+L K G +P + Sbjct: 272 ELRQGKKFEVIAKEKSIDDQTKLKGGDLGWAPRG-IYEKSFEDAAFALTKVGQISPPVQT 330 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDI 371 S+G+ + + + ++ + ++ + Sbjct: 331 SYGWHVIQLLGREKDRPLT-ETQRQQL 356 >gi|167753138|ref|ZP_02425265.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216] gi|167659452|gb|EDS03582.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216] Length = 678 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 94/703 (13%), Positives = 218/703 (31%), Gaps = 119/703 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L +R V I + + F++ L + V + K+ +S +I + Sbjct: 4 LNTLRTRF-GVVLSIIIAFALLAFILS-LKTDMGLSGNDPKVGVIDGSKIRYSEYIEVYN 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + S + L + L++ E +G+ G I+ Sbjct: 62 NLKDQ-----SNISESNEEQMDQLAEMAWQTLIANHVYLPGFEKMGISVTDAEREGLISG 116 Query: 122 S-------PLFHGK-DNKFSHDVFVSRLAREGINEK-EYI--DHYTKMLSRTDVV---GM 167 F ++S + +A+ N + +Y+ + + ++ G+ Sbjct: 117 EYYSGTMAAAFTDPRTGQYSVEGVSDFIAQATGNPQMQYMWGALVGQAMREREINKYNGL 176 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRA 226 GG+ + L ++ + S ++ +P S++ + ++ +K Y Sbjct: 177 VKGGVYVNRLEAEEGVDAQNKTFSGSWVGKRYHDMPDSLFSVSDSEIKAYYNSHKARYEQ 236 Query: 227 PEYKRISYILFDVHEKEKKIEISN-------------DELQAEYEKNKEKYFSPEIRTVE 273 + +SY++F+V + + D+ +A + N+ + R+V Sbjct: 237 KPSRTLSYVVFEVAPSAEDMATLEKTVREVGDEFAASDDPKAFAKNNRFGKITDNYRSVA 296 Query: 274 QLV---------------------------------------------FPNQKEADEAFQ 288 QL+ + + AD Sbjct: 297 QLLDDEAEALANGKQYGPVLKNDTWTMTRVVETLNAPDSVGVRHIVLTYDQRDLADSLMT 356 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL---AKKGDFTPVIHGS 345 +L++G F Q A + D G + +P + D + L AK+GD V G Sbjct: 357 ALRQGADFAQAARTHSLYMQDAGNGGDA-GVMPFSAFPDELSGLLSTAKQGDILRVEVGD 415 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG--TSMDE 403 + + + S I + + A+ + L G + +E Sbjct: 416 ----VIQILQVYRLDKPSKHMRLATITYPVEASSATRRNVHSQASLFSVEGKGSVDAFNE 471 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + + + L + + + +L+ + D + + Y Sbjct: 472 AANKGNLTPREAKLTQ------GDRLLQGLADSRELVRWAY--DAKVGAISEIFPVGDDY 523 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + + E +E+V ++++ T K K ++V E +G ++ +N Sbjct: 524 VVAVVTEIDNEDYTPIEKVANNIRQTLITDK-------KFEKIVSEM--KGSTIEEVAQN 574 Query: 524 LGASLLTTNQIN--RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 LG ++ + N I + + P++ + VF VT+ + Sbjct: 575 LGTEVVPFEDVRYGSFFIRNMGVEPRVIGAITATEQTNTLSEPVKGNVGAYVFVVTDIQE 634 Query: 582 GPVQE--------KDKFISYLTQMMNKDLLDSV--IAYLKSQY 614 + + + Q D L+ + + L+ +Y Sbjct: 635 AETPQSIEAEKVRAEASSQGMIQRRLFDFLEQMSNVEDLRGKY 677 >gi|163737941|ref|ZP_02145357.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis BS107] gi|161388557|gb|EDQ12910.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis BS107] Length = 283 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 5/159 (3%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S+++L+ Y++ + ++ +++A + L G F LA E+ S Sbjct: 117 SDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAELDAGADFATLARERSTGPS 176 Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG FSK + +++ + GD + + FG+ + +++ + S +F Sbjct: 177 GPNGGELGWFSKGRMV-PQFEEAVLVMG-AGDVSDPVQTQFGWHVIKLNDRRTSAAPTFD 234 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 EV++++A QMR ++V +D Sbjct: 235 EVREELATQMRQEAVEDRVLSLTTAATIERPEIEDLDPA 273 >gi|218129785|ref|ZP_03458589.1| hypothetical protein BACEGG_01364 [Bacteroides eggerthii DSM 20697] gi|317475868|ref|ZP_07935125.1| peptidyl-prolyl cis-trans isomerase [Bacteroides eggerthii 1_2_48FAA] gi|217987895|gb|EEC54220.1| hypothetical protein BACEGG_01364 [Bacteroides eggerthii DSM 20697] gi|316908028|gb|EFV29725.1| peptidyl-prolyl cis-trans isomerase [Bacteroides eggerthii 1_2_48FAA] Length = 712 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 89/733 (12%), Positives = 201/733 (27%), Gaps = 138/733 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + F + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G S+ ++ + ++ V+ ++ E +GL + I Sbjct: 61 EYTEVVKFSSGMNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHYTKML-------- 159 + F F D+ L + + +Y ++Y M Sbjct: 120 GAHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYESMYNFWAFVEK 178 Query: 160 ------SRTDVVGMFVGGMRPSNLLLD--------------------------------- 180 + + + + + + Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESD 238 Query: 181 ---------QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK------YKDNYR 225 + R Y E R++ YI + P + ++ + N+ Sbjct: 239 LKEAYDKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLGETSSDYANFI 298 Query: 226 APEYKRISYILFDVHEKEKKIEI-------------------SNDELQAEYEKNKEKYFS 266 Y +K ++ S++ + + K Sbjct: 299 RSTGSTQQYTDLYYTDKALPADVVARLDSVKVGEVYGPYYNASDNTINSF--KKLATAAM 356 Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 + Q+ +A D + ++K G F ++A++ G++ + IS ++ Sbjct: 357 ADSIQFRQIQITAGDDAKTKTLADSVYNAIKGGADFAEIAKKYGQTGEPTWISSANYEGA 416 Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 I +L ++ SL + + + G VI V + K VK + Sbjct: 417 QIDGDNLKYIAAVTSLGQN-ELANLALGQAN-VILQVMSKKA--------VKDKYKVAVI 466 Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + E + Y +F+A ++++++ + L +D + + Sbjct: 467 KRPVEFSKETYSKAYNDFSQFIAANNTLEKLAANAEDAGYRL--LDRTDLYSSEHAIGGV 524 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 ++ L F M V + P R L V ++ + Sbjct: 525 KGTKEALRWAFTAKAGEVSGLYECGESDHMMVVAVTGIAPEGYRPLSMVKEQLRSEILRD 584 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGI 549 K KA +++ + G D + + S+ + Sbjct: 585 K-------KAEKIMADMKAAGATSFDQYKNMANAVSDSVKHVTFAAPAYVPVLRSSEPLV 637 Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 S PI+ V + + K + M+ + I Sbjct: 638 GAYASTAELNKLSAPIKGNGGVFVLQPYAKEKLSETYDQKTEETTLENMHARMAGQFIND 697 Query: 610 LKSQYSVTVHDNL 622 L + V + L Sbjct: 698 LYLKAEVKDNRYL 710 >gi|229046560|ref|ZP_04192211.1| Foldase protein prsA 1 [Bacillus cereus AH676] gi|228724735|gb|EEL76041.1| Foldase protein prsA 1 [Bacillus cereus AH676] Length = 303 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 35/274 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215 S ++V G + S+ + + +N S ++ + + ++ L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 103 Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 104 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 155 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPD 322 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 156 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 214 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 215 -EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 271 --PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302 >gi|154148381|ref|YP_001406634.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] gi|153804390|gb|ABS51397.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] Length = 275 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + KK+ +S+DE + YE+N + PE + ++ +KEA L K Sbjct: 100 DNEFKKVNVSDDEAKKFYEENNASFVIPEQISASHILVKEEKEAKNIISKLSKLKGEKLS 159 Query: 294 KKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 K+F ++A E+ G + +LG F K + + ++F L K + FGY Sbjct: 160 KEFAKIASEKSIDNGTKQNGGALGFFQKGQMVEP-FEKAVFGLKKGELTKQPVKTQFGYH 218 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I ++ K + T+ F+ VK I N ++ K +++ E + L Sbjct: 219 IILKTDEKKASTLPFESVKNAIINNIKGQKFQKQIDEKAEAL 260 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 88/271 (32%), Gaps = 32/271 (11%) Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 DV I+I+++++ E+N + + ++++ +K + Sbjct: 20 DVLATAGDIKITDEDITPFLEQN----------HMNGIDINDEQKKALLENLIK----YK 65 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L +E S + L + D++ F L + +F V + Sbjct: 66 LLVKEAKNSGVENELEYKKR---LDIAADGIAFGLWQDNEFKKVNVSDDEAKKFY-EENN 121 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL--GTSMDEISRREKIVSIDL 415 SF + + I+ + K ++ K +L + +I+ + I + Sbjct: 122 ASFVIP-----EQISASHILVKEEKEAKNIISKLSKLKGEKLSKEFAKIASEKSIDNGTK 176 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 G KG+ V E VFG V G ++ ++ E A Sbjct: 177 QNGGALGFFQKGQMV------EPFEKAVFGLKKGELTKQPVKTQFGYHIILKTDE-KKAS 229 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 E V + + K K +++ KA L Sbjct: 230 TLPFESVKNAIINNIKGQKFQKQIDEKAEAL 260 >gi|86747655|ref|YP_484151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris HaA2] gi|86570683|gb|ABD05240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris HaA2] Length = 306 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 5/168 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E+ R ++ D+ E K +++ ++ YE ++ + ++ + EA Sbjct: 110 EFARNRLLMDDLLGVEGKAATTDEAMKKVYEDAAKQISGEQEVHARHILVETEDEAKAIA 169 Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + LKKG F +LA+++ K LG F+K+ + + F+L + G + + Sbjct: 170 EELKKGADFAELAKKKSKDPGASDGGDLGFFTKDQMV-PEFSAVAFAL-EPGKISDPVKS 227 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I V + +F +VK I + S+ V + + + Sbjct: 228 QFGWHIIKVEEKRNRKPPTFDQVKPQIEQYVTRKAQSDYVTQLRQAAK 275 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 6/134 (4%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 +V V+T +E + A +L K+G +F ++ K ++ + Sbjct: 150 QEVHARHILVETEDEAKAIAEEL-----KKGADFAELAKKKSKDPGASDGGDLGFFTKDQ 204 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603 + + F+ + P+++ + + KV + D+ + Q + + Sbjct: 205 MVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKPPTFDQVKPQIEQYVTRKAQ 263 Query: 604 DSVIAYLKSQYSVT 617 + L+ V Sbjct: 264 SDYVTQLRQAAKVE 277 >gi|228959094|ref|ZP_04120794.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229145438|ref|ZP_04273824.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24] gi|228638014|gb|EEK94458.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24] gi|228800603|gb|EEM47520.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 303 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 89/240 (37%), Gaps = 33/240 (13%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215 S ++V G + S+ + + +N S ++ + + ++ L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 103 Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 104 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 155 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPD 322 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 156 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 214 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 215 -EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 >gi|121602142|ref|YP_988681.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Bartonella bacilliformis KC583] gi|120614319|gb|ABM44920.1| PPIC-type PPIASE domain protein [Bartonella bacilliformis KC583] Length = 315 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I++ +L+ Y+K + ++ +KEA + LKKG+ F ++A++ Sbjct: 137 KITDGDLKILYDKEVAALPKEDEVKARHILVKTKKEAQAIIKRLKKGENFEEIAKKDSTD 196 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTV 362 S LG FS + D+ FSL K G++T + FG+ I V + + Sbjct: 197 GSAAVGGDLGYFSYGQMVKP-FEDAAFSL-KVGEYTKNPVESPFGWHIIKVEDRRLKQPP 254 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F + K+ + Q+ + + + + +++ Sbjct: 255 EFDDAKEVLRAQIIKDRYQQLIADLRSKID 284 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 5/134 (3%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 +VK VKT +E + +++ K+G+NF +I K + Sbjct: 158 DEVKARHILVKTKKEAQA-----IIKRLKKGENFEEIAKKDSTDGSAAVGGDLGYFSYGQ 212 Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603 FS V P+E+ + + KV + ++ E D L + KD Sbjct: 213 MVKPFEDAAFSLKVGEYTKNPVESPFGWHIIKVEDRRLKQPPEFDDAKEVLRAQIIKDRY 272 Query: 604 DSVIAYLKSQYSVT 617 +IA L+S+ V Sbjct: 273 QQLIADLRSKIDVK 286 >gi|27904901|ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396883|sp|Q89A98|PPID_BUCBP RecName: Full=Putative peptidyl-prolyl cis-trans isomerase D; Short=PPIase D; AltName: Full=Rotamase D gi|27904299|gb|AAO27132.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 511 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 100/254 (39%), Gaps = 13/254 (5%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV--NSERARSV-GLDKKILDNLVSG 96 S + + ++ FI + E + + N + + + + L N++ Sbjct: 38 SEYEIKINNTEISREEFIQRYNLECFYNDKNFKNDIITNPKNPKYISEIYNITLSNIIYE 97 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + L Q++ + D+ V I + +F ++ KF+ + + L + I+ EYI Sbjct: 98 SLLQQYVHQLHFNIDYSHVKNYIYKQTIFR-QNQKFNKEKYYEYLKKLQISSNEYIKKVM 156 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L + + N + + + + R V+ +N ++ I SN L ++ Sbjct: 157 TYLEIKEFIKTLTNTDFILNNEKNNILKLFEQGRIVNKSYVNLNNLKLIEHISNKELKRY 216 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + +K + +P+ +ISY L + + ++ Y KNK+ F E+ + Sbjct: 217 YINHKHQFLSPKKFKISYFLINKNNVFVPC------IKKFYFKNKDNTFQHELFLQHK-- 268 Query: 277 FPNQKEADEAFQSL 290 ++K+ D + L Sbjct: 269 -KSKKQNDNIIKKL 281 >gi|149912930|ref|ZP_01901464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp. AzwK-3b] gi|149813336|gb|EDM73162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp. AzwK-3b] Length = 285 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 7/161 (4%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 ++ ++QA YE+ ++ ++ A + L+ G F LA E S Sbjct: 119 TDADIQAAYEERYASAGQETEYKAAHILVETEETARDLIAQLEGGADFATLARENSTGPS 178 Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG F + + S +++ SL + G + + FG+ + ++ + + T + Sbjct: 179 GPNGGDLGWFGPGVMVE-SFFNAVASL-EPGQVSEPVQTQFGWHVIKLNETRLTETPPLE 236 Query: 366 EVKKDIANQMRITKASEKVKEDYKR--LEEFLALGTSMDEI 404 EV+ +I ++ K V + +E A G + + I Sbjct: 237 EVRAEIEETLQQEKFDAHVDTLTDQATIERSDASGIAPETI 277 Score = 37.3 bits (85), Expect = 8.6, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 11/159 (6%) Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +I+ ++ + ++ + + + +E + L L G ++R Sbjct: 122 DIQAAYEERYASAGQE--TEYKAAHILVETEETARDLIAQLEGGADFATLAREN------ 173 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 +G + + F +P V G + +++ E+ Sbjct: 174 --STGPSGPNGGDLGWFGPGVMVESFFNAVASLEPGQVSEPVQTQFG-WHVIKLNETRLT 230 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 LEEV ++++ + K V + +Q +E S Sbjct: 231 ETPPLEEVRAEIEETLQQEKFDAHVDTLTDQATIERSDA 269 >gi|229030040|ref|ZP_04186105.1| Foldase protein prsA 1 [Bacillus cereus AH1271] gi|228731301|gb|EEL82218.1| Foldase protein prsA 1 [Bacillus cereus AH1271] Length = 288 Score = 110 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 12/224 (5%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKIEI 248 Y ++ ++ + S+ + E+ K DN++ E + + + +I Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKEKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + EK+ ++ + PE++ V ++ ++K A E + + G+ F LA++ + Sbjct: 120 EKAIKETVTEKDVKENYKPEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTG 178 Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 G + P ++ F L G + + ++GY I V++ K F Sbjct: 179 SKEQGGEITGFAPGQTVKEFEEAAFKL-DAGQVSEPVKTTYGYHIIKVTDKKE--LKPFD 235 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 EVK I + + + + +++ L + + K Sbjct: 236 EVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFK 279 Score = 43.8 bits (102), Expect = 0.098, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 54/148 (36%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK++ +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DVKENYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V ++ F D + Y +++ + + +EV Sbjct: 191 PGQTV------KEFEEAAFKLDAGQVSEPVKTTY--GYHIIKVTDKKE--LKPFDEVKDQ 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 241 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 268 Score = 41.9 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPV 557 K + V E G++F + K + Q I ++ F Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFE--EAAFKLDA 207 Query: 558 EMVKCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLK 611 V P++ Y + KVT+ K + P E KD+ L Q +D V+ L Sbjct: 208 GQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLL 266 Query: 612 SQYSVTVHDN 621 + V+D Sbjct: 267 KDADIKVNDK 276 >gi|329956951|ref|ZP_08297519.1| hypothetical protein HMPREF9445_02394 [Bacteroides clarus YIT 12056] gi|328523708|gb|EGF50800.1| hypothetical protein HMPREF9445_02394 [Bacteroides clarus YIT 12056] Length = 712 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 97/732 (13%), Positives = 209/732 (28%), Gaps = 136/732 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + F + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G S+ ++ + ++ V+ ++ E +GL + I Sbjct: 61 EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157 + F F D+ L + + +Y ++Y K Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PAQYAEYYNSMYNFWAFVEK 178 Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179 L + + F + S+LLL Sbjct: 179 SLVQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAAVPYSSIVDSTIVIKESD 238 Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW---FEKYKDNYR--- 225 + R Y E R++ YI + P + ++ + +Y Sbjct: 239 LKDAYDKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLAENPSDYANFV 298 Query: 226 -----APEYKRISYI----LFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266 +Y + Y DV + +++ S++ + + K Sbjct: 299 RSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSF--KKLATAAM 356 Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 + Q+ + A D + ++K G F ++A++ G++ + IS ++ Sbjct: 357 ADSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416 Query: 319 YIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + +L + + + + T + G VI V N K VK + Sbjct: 417 QVDGDNLKYIAAITTLGQNELTNLALGQAN-VILQVMNKKA--------VKDKYKVAVIK 467 Query: 378 ---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + E + Y +F+A ++D+++ + L +D A + + Sbjct: 468 RPVEFSKETYSKAYNDFSQFIATNNTLDKLTANAEDAGYRL--LDRADLYSSEHNIGGVK 525 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 ++ L F M V + +P R L V ++ + K Sbjct: 526 GTKEALKWAFAAKAGEVSGLYECGESDHMMVVAVTRIVPEGYRPLSMVQDQLRSEILRDK 585 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 KA +++ + G D + + S+ + Sbjct: 586 -------KAEKIMADMKAAGATSFDQYKNMANAVSDSVKHVTFAAPAYVPALRSSEPLVG 638 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 S PI+ V + + + M+ + I L Sbjct: 639 AYASIAELNKLSTPIKGNGGVFVLQPYAKDKLNETYNQETEEATLENMHARMASQFINDL 698 Query: 611 KSQYSVTVHDNL 622 V + L Sbjct: 699 YLNADVKDNRYL 710 >gi|171060558|ref|YP_001792907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170778003|gb|ACB36142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 336 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 127/379 (33%), Gaps = 77/379 (20%) Query: 22 FVPFLIWGLSDALFSVSGSSTV--VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + L+ G++ + + +V V +P ++ L ++I Sbjct: 20 LLTALVMGVASLSSGPALAQSVFAARVNGVGIPAQRLERQFEALLR--ERQIHIARLQNP 77 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFV 138 AR+ L ++ LD L+ L Q +GLEAD V I + F +VF Sbjct: 78 ARARELRREALDRLIGIELLGQQARALGLEADDAAVERAITEARSRFRSA------EVFA 131 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 R+A EG +E + +H K+LS + R VD Sbjct: 132 QRIAIEGHDEASHREHTRKLLSGERLA-----------------------QRIVDR---- 164 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 + A + + E +R PE R+ +L + + Sbjct: 165 ------EVHITEADIAAFHEANPALFRRPEQVRVRQLLVALPADAEPA------------ 206 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSF 315 L + + + G+ F LA + + +L F Sbjct: 207 ----------------LKAQARSRIEALLVRARAGESFEALARTHSDAPTRQWGGALDPF 250 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + P ++ D+ F+LA G + VI S G+ I + + +V EV++ I + Sbjct: 251 GRGSQP-RAIEDAAFALA-PGALSEVIETSAGWQILQLDERIAAVSVPLDEVRERIRRHL 308 Query: 376 RITKASEKVKEDYKRLEEF 394 + + V+ + RL E Sbjct: 309 HDGRGQQAVEREIARLREQ 327 >gi|163792785|ref|ZP_02186762.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199] gi|159182490|gb|EDP66999.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199] Length = 329 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 4/142 (2%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +++ D L+ Y+ + E ++ + +A L KG F LA+E+ Sbjct: 166 AQVTEDALRERYKTFAAEQSGREEAHASHILLDTEDQAKAVIADLDKGGDFAALAKERST 225 Query: 306 SLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG FS E + + + F+L + FG+ + + + + Sbjct: 226 DPAGAEGGDLGWFSAEQMV-PEFSQAAFALTPGTYSKEPVKSQFGWHVIKLVEKRTTEAP 284 Query: 363 SFQEVKKDIANQMRITKASEKV 384 +F++V+ +A+++ + K+ Sbjct: 285 AFEQVRDQLASELSRELITAKL 306 >gi|228953196|ref|ZP_04115250.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806423|gb|EEM52988.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 303 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 103/272 (37%), Gaps = 31/272 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F +A++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAAVAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD-- 270 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 271 PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 302 >gi|229128201|ref|ZP_04257182.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4] gi|228655060|gb|EEL10917.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4] Length = 303 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 33/240 (13%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 S ++V G + S+ + + +N S ++ + + ++ +T+ E+ Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLEE 103 Query: 220 YKD----NY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 KD N+ + + + L EK K ++ +++ Y+ Sbjct: 104 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 155 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPD 322 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 156 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 214 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 215 -EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 >gi|288573832|ref|ZP_06392189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569573|gb|EFC91130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 297 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 20/206 (9%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 EKYK+ E + ++ + + ++S++E++ Y+ +K + PE ++ Sbjct: 91 EKYKETMAELEKRVLAGMAM--EKVLSGAKVSDEEVKKFYDDHKAAFEVPESVKASHILI 148 Query: 278 ------------PNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIP 321 +KEA + + + GK F A+ S LG F++ + Sbjct: 149 QVSKDAGNDLWKKAKKEATKIRKDILAGKVSFEDAAKRDSDCPSKSRGGDLGFFTEGQMV 208 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + F+ K GD + + FGY I V++ K + F EVK I Q+ K Sbjct: 209 -PEFEKAAFA-TKIGDISDPVKTQFGYHIIKVTDHKDASEQPFDEVKDGIRQQLLQQKQR 266 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRR 407 + + E +L++ + + E+ + Sbjct: 267 DTLSEYVDKLKKTYKVEILLPELKKA 292 Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 16/195 (8%) Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 K V A E++L D+ + K + D ++ ES+ A ++ Sbjct: 102 KRVLAGMAMEKVLSGAKVSDEEVKKFY-----DDHKAAFEVPESVKASHILIQVSKDAGN 156 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 WK + +A ++ + +F D K + + + Sbjct: 157 DLWK------KAKKEATKIRKDILAGKVSFEDAAKRDSDCPSKSRGGDLGFFTEGQMVPE 210 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLL 603 F+ + + P++ Y + KVT+ K Q D+ + Q + + D L Sbjct: 211 FEKAAFATKIGDI-SDPVKTQFGYHIIKVTDHKDASEQPFDEVKDGIRQQLLQQKQRDTL 269 Query: 604 DSVIAYLKSQYSVTV 618 + LK Y V + Sbjct: 270 SEYVDKLKKTYKVEI 284 >gi|182414379|ref|YP_001819445.1| hypothetical protein Oter_2563 [Opitutus terrae PB90-1] gi|177841593|gb|ACB75845.1| hypothetical protein Oter_2563 [Opitutus terrae PB90-1] Length = 553 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 66/493 (13%), Positives = 145/493 (29%), Gaps = 62/493 (12%) Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGEIARSPLFHGK 128 ++G+ V+ + A Q E + L A + I +F G Sbjct: 74 QMGYPVDGAELQDYAF---------QRAASLQLAEQLHLPPATQQEITDAIKSLRIFAGA 124 Query: 129 DNKFSHDVF---VSRLARE--GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 D +F + L G NE + + V + G + Sbjct: 125 DGQFDAQRYATFRDSLKSNRAGFNEASVTRVLSDDVRINKVQRLIAGPGYVLPAEVRMQL 184 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + ++ ++ ++ +LT+++E+ Y P + Y F + Sbjct: 185 EQADASWTLGVATIDYAGFNPTIPATDELLTKFYEENAFRYEIPPRVVVDYAEFSLQAIL 244 Query: 244 KKIEISNDELQAEYEKNKEKYFSP--------------EIRTVEQLVFPNQKEADEAFQS 289 I+++ E++A Y+ N ++ P + V V K+ + Sbjct: 245 PTIQVTEAEVRAFYDANPARFPKPAADAKAPAKTDPAVDYAAVRPQVEAALKQERARRIA 304 Query: 290 LKKGKKFIQLAEEQGKSLSD--------------ISLGSFSKEYIPD-----VSLADSIF 330 K F E+ SL F++E P +A F Sbjct: 305 AKNASDFAYSLFEKKLKPGIPEFTSYLAAQGITLKSLAPFTREAGPAEFGGSQEIAGEAF 364 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED--- 387 L + + G V+ +++PS +F EV++ + R ++ ++ E Sbjct: 365 KLGPNHRISDALTAPTGSVVLFWQDLQPSRKPAFVEVREQVLADYRESEKRKRFVELGRT 424 Query: 388 -YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 +E + G + + + + + + Y ++ + Sbjct: 425 IRSAIESRVKAGANFTDAVAAAASANTVKIEAKMLAPFTRRQPPQDLDYT---VYGALER 481 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE---EVSSKA 503 D + + + + +P E + A S+ Sbjct: 482 LDKGQVLDMMIAREHGLIVYAADKKVPEA----SEANPQFAAARTQLAMATGRVGASAYL 537 Query: 504 NQLVLEYSKEGKN 516 N++V E K+ + Sbjct: 538 NEVVTEELKKSEP 550 >gi|16077140|ref|NP_387953.1| protein secretion PrsA [Bacillus subtilis subsp. subtilis str. 168] gi|221307882|ref|ZP_03589729.1| hypothetical protein Bsubs1_00365 [Bacillus subtilis subsp. subtilis str. 168] gi|221312204|ref|ZP_03594009.1| hypothetical protein BsubsN3_00365 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317137|ref|ZP_03598431.1| hypothetical protein BsubsJ_00365 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321400|ref|ZP_03602694.1| hypothetical protein BsubsS_00365 [Bacillus subtilis subsp. subtilis str. SMY] gi|586895|sp|P37566|YACD_BACSU RecName: Full=Uncharacterized protein yacD gi|467461|dbj|BAA05307.1| unknown [Bacillus subtilis] gi|2632339|emb|CAB11848.1| putative protein secretion PrsA homolog [Bacillus subtilis subsp. subtilis str. 168] Length = 297 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 116/381 (30%), Gaps = 119/381 (31%) Query: 13 VAKIFLVVLFVPFLIWGLS---DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + I L L V + + + S ++ ++G + V ++ + + G Sbjct: 6 IWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYG---- 61 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 K L+++++ ++Q + L+ V E + Sbjct: 62 -----------------KSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKA---VN 101 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 N F D E EKE+ D + D++ Sbjct: 102 NSFYED--------EHTTEKEWKDQIRYNILLEDLL-----------------------T 130 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R +D SN L ++ K K+ Y+ + RI Sbjct: 131 RDIDI--------------SNKELESFYNKNKELYQFDDSYRI----------------- 159 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306 +V +++EA E + LK G F +A E+ Sbjct: 160 -----------------------RHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYT 196 Query: 307 -LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG ++ + IP + ++ +L + I S GY I + + T S Sbjct: 197 SPYGGDLGFVTEASDNIPSAYIEEAK-TLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFS 255 Query: 364 FQEVKKDIANQMRITKASEKV 384 F EVK I Q+ + + +K Sbjct: 256 FDEVKDQIRRQIAMDQLGDKA 276 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 9/120 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442 +E+ + + + L G+S + ++ P G + + Y E+ L Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKE 226 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 +P+ Y +Q+KE + AR +EV +++ + ++ + K Sbjct: 227 DEWSQEPIKVS-------NGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVK 279 >gi|228908608|ref|ZP_04072446.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200] gi|228851024|gb|EEM95840.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200] Length = 303 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 29/238 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 47 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEIT-KQLKELK 105 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 106 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKNHYK---------P 156 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVS 324 V ++ ++K A E + L G+ F LA++ + G F + Sbjct: 157 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-E 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 216 FEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 >gi|115375700|ref|ZP_01462954.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] gi|115367263|gb|EAU66244.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1] Length = 204 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 5/176 (2%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 RA E R+ + ++ ++ +EL+A Y ++ ++ PE QLV Sbjct: 4 AELRAREANRLIIEKLFTNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLD 63 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 EA LK GKKF LA S LG F + +P + +F+L + G Sbjct: 64 EARRVQAQLKAGKKFADLARRYSLSADAKVGGDLGFFPRGQMP-PVFDEVVFNL-RPGQV 121 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V+ +GY + V KP+ F EV+ + + K E + K L + Sbjct: 122 SDVVSTEYGYHLFRVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDK 177 Score = 41.1 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 10/169 (5%) Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + Y V+ + + E + Q+ + K ++ +R++ L G + Sbjct: 21 TNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLKAGKKFAD 80 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 ++RR + + D + G +G+ P ++++F + + V + Y Sbjct: 81 LARRYSLSA-DAKVGGDLGFFPRGQ---MPPVFDEVVFNL-----RPGQVSDVVSTEYGY 131 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 ++ E PAR R EV V+ K EE + +L+ +K Sbjct: 132 HLFRVLEFKPARKRDFVEVRAKVEAREVKRK-QEEAHEAFEKALLDKAK 179 >gi|160892220|ref|ZP_02073223.1| hypothetical protein BACUNI_04684 [Bacteroides uniformis ATCC 8492] gi|270296161|ref|ZP_06202361.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480738|ref|ZP_07939824.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36] gi|156858698|gb|EDO52129.1| hypothetical protein BACUNI_04684 [Bacteroides uniformis ATCC 8492] gi|270273565|gb|EFA19427.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903079|gb|EFV24947.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36] Length = 712 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 94/725 (12%), Positives = 206/725 (28%), Gaps = 132/725 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + F + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGESISAQDFQALVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G S+ ++ + ++ V+ +++ + +GL + I Sbjct: 61 EYTEVIKFSSGNSALSDE-QTNQIKDEVWRTYVNNKLIEKEAKKLGLVVSKAEIQAIINA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHYTKML-------- 159 + F F D+ L + + +Y ++Y M Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PSQYAEYYESMYKFWSFLEK 178 Query: 160 ------SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV------------DYIVLNNRH 201 + + + + + A E + IV+ + Sbjct: 179 SLIQARLQEKYQALITKSLFSNPVEAQDAFDARVEQSDLLLAAVPYSSIVDSTIVIKDSD 238 Query: 202 VPAIADPSNAVLTQWFE---------------------------------KYKDNYRA-- 226 + A D Q+ E +Y Sbjct: 239 LKAAYDKKKEQFKQYVETRNIKFIDVQVTASAEDRAALQKEMEEYTEQLTANPSDYTTFI 298 Query: 227 -------PEYKRISYILFDVHEKEKKIE-------------ISNDELQAEYEKNKEKYFS 266 P + +++ +S++ L + K Sbjct: 299 RSTGSEAPYTDLFYTTKSLPADVTARLDSVAVGGVFGPYYNVSDNTLNSF--KKLATAAM 356 Query: 267 PEIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ + AD + ++K G F ++A++ G++ + IS ++ Sbjct: 357 PDSIEFRQIQVVAEDAEKTKTLADSIYNAIKGGASFAEVAKKYGQTGEPTWISSANYEGA 416 Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 I +L ++ +L + + T + G VI V+N K VK + Sbjct: 417 QIDGDNLKYITAVTTLGQN-ELTNLALGQAN-VILQVTNKKA--------VKDKYKVAVI 466 Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + E + Y +F+A +++++ + L +D A + I Sbjct: 467 KRPVEFSKETYSKAYNEFSQFIAANNTLEKMIANAEDAGYKL--LDRADLYSSEHGIGGI 524 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 + L F + V + +P R L V ++ + Sbjct: 525 RGTKDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLRAEILRD 584 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 K AE++ + ++ KN + S+ + Sbjct: 585 KKAEKIMADMKAANATSFEQYKNM---ANAVSDSVKHVTFSAPAYIPALRSSEPLVGAYA 641 Query: 554 SGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 S PI+ V + K+ K+ + L M + + I+ L Sbjct: 642 SIAEVNKLSAPIKGNGGVFVLQPYAKEKLNETFNKETEEANLANMHAR-MASQFISDLYM 700 Query: 613 QYSVT 617 + +V Sbjct: 701 KANVK 705 >gi|298372736|ref|ZP_06982726.1| peptidyl-prolyl cis-trans isomerase [Bacteroidetes oral taxon 274 str. F0058] gi|298275640|gb|EFI17191.1| peptidyl-prolyl cis-trans isomerase [Bacteroidetes oral taxon 274 str. F0058] Length = 702 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 97/719 (13%), Positives = 221/719 (30%), Gaps = 130/719 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR + I + V + F++ + + F + V S+ KV ++ F+ S Sbjct: 4 LGRIRNH--GVLLLIVIGVALLIFIVTDFVNNGSTFFREQKANVGSIDGDKVKYNDFLAS 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 Q + G ++ + S + +++ + +V +++ +IG+ + I Sbjct: 62 LNQMQDFYKVERGQNIDDQM--SEQIRQEVWNQIVMRQVVEKDARNIGMGVSKQELSDLI 119 Query: 120 ARS---------PLFHGKD-NKFSHDVFVSRLA-------REGINEKE--YIDHYTKMLS 160 P+F + F ++ + + + N ++ + +Y K + Sbjct: 120 MSKNPSPLIMMRPVFQNPETGMFDPNIVANFIKELESADGNKNANPEQVVLMKNYWKFIE 179 Query: 161 RTDVVGMFV---GGMRPSNLLL---DQAKRFYFENRSVDYIVLNNRHVP---AIADPSNA 211 G + +L+ + + SVD + + + +++ Sbjct: 180 TNVKFGSLFEKYNTLLTKSLVTNTKEAQFAYNNSKYSVDVLYAMKPYFTIADSTVKVADS 239 Query: 212 VLTQWFEKYKDNYRAP--------------------------EYKRISYILFDVHEKEKK 245 + ++K K+ ++ E ++ + + Sbjct: 240 EVEALYKKKKEQFKQDPYVDIDFVVFPIKPSKEDIDAVRKQIETAKVGFAAVNDSLLTDT 299 Query: 246 IEISND---------------ELQAE--------------------YEKNKEKYFSPEIR 270 + ++D +L+ K + P+ Sbjct: 300 VNFNSDVPYRDVFLAQGDIPSDLRDFAFSADRGVVFGPVFVDNTFKIAKVVDTKQMPDSV 359 Query: 271 TVEQLVFPNQKEADEAFQS------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324 + + + A+ L K F LA++ S G ++ V+ Sbjct: 360 KLSFIAIQ-EATAEATKAKVDSVLGLAKQTPFATLAQQYSADKQSGSRGG-DIGWVRQVT 417 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYV--IAHVSNI-KPSFTVSFQEVKKDIANQMRITKAS 381 L+ + S G I V+ KP V ++ N Sbjct: 418 LSPELLRKVSAAAINEPFVMSQGSAASIFVVTERTKPVKMVKLAVIE---RNVATSNGTQ 474 Query: 382 EKVKEDYKRLEEFLAL-GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 K+ ++ K+ L G+ D+ ++ + ++ D + IP Q++ Sbjct: 475 AKIFQEAKQFAGLLGGNGSDFDKKAKEKN-----YQVIPANTIDRNFPRLLNIPETRQVI 529 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F D + V + + +K + L+EV + + + K + + Sbjct: 530 RWAF--DSKVGATSDVFECGDNLVVATVKRMNKEGYKTLDEVKPQLLSELRKDKKFDMMK 587 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 GK + ++ G S+ T + N G+D + + + P V Sbjct: 588 G---------LFAGKTIDRL-RDEGLSVDTVKGLTFASNSAGSLGFDA-AMIANAPFAEV 636 Query: 561 K--CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P++ + VF+V + P K + Y+ N L V+ LK Y V Sbjct: 637 NKLSAPMKGNIGAFVFQVLSKTENPEPFDLKQMKYVIGQQNSGLFYYVLEALKKAYKVK 695 >gi|91761956|ref|ZP_01263921.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique HTCC1002] gi|91717758|gb|EAS84408.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique HTCC1002] Length = 473 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 161/478 (33%), Gaps = 68/478 (14%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ + S+ + + L+ + + +G FS + + + + F++ + Sbjct: 1 MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMD-Y 59 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 E G+ Q I ++ + +++L LVS LD IE++ L + +I Sbjct: 60 LNESGLSQQVIKENID------KNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIK 113 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + FH ++ F ++ L + + + + GG + L++ Sbjct: 114 NNKNFHDENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLIN 173 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + ++YI L+ ++ + + E+ E + YI F Sbjct: 174 KFYKENNKKLDIEYIDLST-FYKKKEMFTDNDIKFFVEENA------EKLKQDYIDFSF- 225 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 +EIS L + N+ + + D+ + K F + Sbjct: 226 -----VEISPKNLLGIDDFNQAFF----------------DKIDDIENQISKNIDFKTIV 264 Query: 301 EEQGKSLSDIS--LGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + S ++++ + +K+ I ++ D I L G + I + N Sbjct: 265 KNLDISPTEVNSYINLDNKKIIENMIYNSREDKIEILENNGAY-----------IFYNIN 313 Query: 356 IKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 S + K+ I N + + E K +++ + S DE + I I Sbjct: 314 NSISKLPDLENPIFKEQITNLLFQKEKFEFNKNILEKINKKTFNQVSFDEFGKN-NIKEI 372 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 L ++ K Q+L+ + P++ +A + + + Sbjct: 373 KLDSINDTKKFETN--------SIQILYSL-----PINSFTLIANNENDVFIAKTIKY 417 >gi|254476741|ref|ZP_05090127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11] gi|214030984|gb|EEB71819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11] Length = 283 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 12/205 (5%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI-------EISNDELQAEYEKNKE 262 + ++ Q K + N P+Y +S + + +E++A YE+ Sbjct: 71 DQLIQQTALKQQLNGEVPKYVELSLENESRSLLAADVIEKVMENAATEEEVRAAYEEQYS 130 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEY 319 + ++ ++++A+E L++G F A E+ S LG F+K Sbjct: 131 DGNGGDEFNASHILVESEEDAEEIRAELEEGADFATTARERSTGPSGPNGGELGWFTKGR 190 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + +++ +L+ G+ + + FG+ + ++ + S F E++ +A Q+R Sbjct: 191 MV-PEFEEAVIALS-AGEISAPVQTQFGWHVIKLNERRKSAAPEFAEIRDQLAAQIREEA 248 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEI 404 E V+ E +D Sbjct: 249 VEESVRTLTTEAEIERPEIEDLDPA 273 >gi|220924508|ref|YP_002499810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] gi|219949115|gb|ACL59507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] Length = 285 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 66/154 (42%), Gaps = 6/154 (3%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-- 300 E K ++ + ++ Y++ + E ++ ++ EA + +K G+ F ++A Sbjct: 118 EAKKAVTPEAARSLYDETVKTLKPEEEVHARHILVESEAEAKKIAGRIKGGEDFAKVAAE 177 Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++ G LG F+KE + + A++ F L G + + FG+ + V + Sbjct: 178 TSKDPGSKAEGGDLGWFTKERMV-PAFAEAAFKL-DAGKVSDPVKTQFGWHVIKVEEKRT 235 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 SF E+K+ I + + + + ++ + Sbjct: 236 KPVPSFDEMKEQIDTYLTRKTQQDIITKLREQAK 269 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 6/158 (3%) Query: 469 KESIPARDRKL--EEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 K P R L E V T +++ E ++A ++ K G++F + Sbjct: 121 KAVTPEAARSLYDETVKTLKPEEEVHARHILVESEAEAKKIAGRI-KGGEDFAKVAAETS 179 Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584 + + + + F V P++ + V KV + PV Sbjct: 180 KDPGSKAEGGDLGWFTKERMVPAFAEAAFKLDAGKV-SDPVKTQFGWHVIKVEEKRTKPV 238 Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 D+ + + + +I L+ Q + D Sbjct: 239 PSFDEMKEQIDTYLTRKTQQDIITKLREQAKIEKTDAA 276 >gi|312796410|ref|YP_004029332.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI 454] gi|312168185|emb|CBW75188.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia rhizoxinica HKI 454] Length = 260 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + S+DE++A YE+ ++ + ++ P++++A E +K G F L Sbjct: 103 DDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKELIAKIKAGASFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G P AD+ L K + +H FG+ I + + Sbjct: 163 AKQHSKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTSTPVHTQFGWHIIRLDDS 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +VK +A Q+ K + E +K + Sbjct: 223 RAIQPPPLDQVKAQVAQQLTQEKLQQFNAELHKNAK 258 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 12/173 (6%) Query: 456 VALPDGSYMW-VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV---------SSKANQ 505 +AL D S + I + + +E+ ++ K E+ +A + Sbjct: 89 IALADQSVVIRALIDDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKE 148 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564 L+ + K G +F D+ K + +D + + + V P Sbjct: 149 LIAKI-KAGASFEDLAKQHSKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTSTP 207 Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + + ++ +S+ D+ + + Q + ++ L A L + Sbjct: 208 VHTQFGWHIIRLDDSRAIQPPPLDQVKAQVAQQLTQEKLQQFNAELHKNAKIQ 260 Score = 40.7 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 51/154 (33%), Gaps = 16/154 (10%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDE 403 + + + S E+K ++ ++ ++ K L + G S ++ Sbjct: 102 IDDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAKELIAKIKAGASFED 161 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 ++++ S D G + +P ++ + + HT + Sbjct: 162 LAKQH---SKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTSTPVHTQF----GW 214 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 +++ +S + L++V V + K + Sbjct: 215 HIIRLDDSRAIQPPPLDQVKAQVAQQLTQEKLQQ 248 >gi|228901403|ref|ZP_04065591.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222] gi|228858227|gb|EEN02699.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222] Length = 303 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 29/234 (12%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 +V G + S+ + + +N S V VL++++ + + L + +K Sbjct: 51 IVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLDDKYKVTDEEVT-KQLKELKDKMG 109 Query: 222 DNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 DN+ + + + L EK K ++ + + Y+ V Sbjct: 110 DNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYK---------PKLQV 160 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADS 328 ++ ++K A E + L G+ F LA++ + G F + D+ Sbjct: 161 SHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK-EFEDA 219 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 220 AYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 270 >gi|163759891|ref|ZP_02166975.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea phototrophica DFL-43] gi|162282849|gb|EDQ33136.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea phototrophica DFL-43] Length = 283 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 86/217 (39%), Gaps = 12/217 (5%) Query: 181 QAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 Q +R E R V V++ + + A+ T+ F+ A + R + + Sbjct: 55 QFERLPAEQRRVAALAAVIDIKALARKAEAEELDQTEEFK----RLMAFQRDRALHNVLF 110 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + IS+ +++A Y++ + E + ++ + EA L GK F + Sbjct: 111 RSGVVE--SISDADVKARYDQEVAATQAEEEISARHILVETEDEAKALITELDAGKDFAE 168 Query: 299 LAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA+E+ + + LG F+K + + F+L K + FG+ + V + Sbjct: 169 LAKEKSTGPSAGNGGDLGYFTKGRMV-PEFEAAAFALEKGQYGKEPVKTQFGWHVIKVED 227 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + F++V I + + E ++E ++ Sbjct: 228 RRDAAPPPFEQVADQIRQVLLRERYGELIREARDNVD 264 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 17/159 (10%) Query: 365 QEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 +VK ++ T+A E++ +++ K L L G E+++ K Sbjct: 121 ADVKARYDQEVAATQAEEEISARHILVETEDEAKALITELDAGKDFAELAKE-KSTGPSA 179 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 G KG+ V + F + V G + +++++ A Sbjct: 180 GNGGDLGYFTKGRMV------PEFEAAAFALEKGQYGKEPVKTQFG-WHVIKVEDRRDAA 232 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 E+V +++ + E + + + +E EG Sbjct: 233 PPPFEQVADQIRQVLLRERYGELIREARDNVDIEVLDEG 271 >gi|228921530|ref|ZP_04084852.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838149|gb|EEM83468.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 293 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 29/271 (10%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 37 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 95 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 96 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 146 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 147 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 206 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 207 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD--P 261 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 262 QFHQQVTRELLKNADIKVSDKDLKDTFKELE 292 >gi|229179148|ref|ZP_04306503.1| Foldase protein prsA 1 [Bacillus cereus 172560W] gi|228604303|gb|EEK61769.1| Foldase protein prsA 1 [Bacillus cereus 172560W] Length = 285 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 29/271 (10%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 29 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 87 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 88 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 138 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 139 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 198 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 199 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD--P 253 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 254 QFHQQVTRELLKNADIKVSDKDLKDTFKELE 284 >gi|325954706|ref|YP_004238366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM 16922] gi|323437324|gb|ADX67788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM 16922] Length = 720 Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats. Identities = 97/612 (15%), Positives = 200/612 (32%), Gaps = 85/612 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFL---IWGLSDALF--SVSGSSTVVSVGRQKVPFSSF 56 L IR+ R WV I + V V F+ ++ + A+ S V +V +K+ + Sbjct: 4 LGEIRR--RPWVIMIVIGVALVAFITGDLFSENSAIRKVFAGDPSVVGTVNGEKIGIGEY 61 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N+ M+ + G V +A ++ +LVS + Q ++IGL+ W Sbjct: 62 QNAINLTTNMLQAQ-GQNVTPNQAA-----QQTWASLVSSKIVQQIADNIGLKVSDEEFW 115 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH---------YTKMLSRTDVVGM 167 +A++ F + + N + + L Sbjct: 116 DFVAQN--FGMGSGDEAKNNIAQLEQAASANPEMMQQYQGWLSTANAIRSQLMLQKYSSY 173 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQWFEKYKDNYR 225 ++ D + + E ++DY ++ + S+ + + +K+ + Sbjct: 174 VKATTLVTSKEADIQQTYNAEMATIDYAKVDYGTLEKKLNVKVSDEDIKAYVKKHPKQFE 233 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 +++Y F + E+ Y++++ K+ T + F Q D Sbjct: 234 VQPMVKLAYTFFPAKATAADEQAVLTEI-NRYKQSQIKHDKENNITDTIVSFA-QANNDS 291 Query: 286 AFQSLKKGKKFI------------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + S F+ QL E+ ++ ++G + S +F L+ Sbjct: 292 IYVSQNSDDPFMSNYFTKQQLASFQLPEDAQSFINSATIGQVGGPFRIGNSYQ--LFKLS 349 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFT---VSFQEVKKDIANQMRITKAS-EKVKEDYK 389 K + + S I + P+ S +E KK + KA+ + + Sbjct: 350 KTKEIKDSVKSS---HILVAFDGSPAAQGVKRSKEEAKKLAETYLAEAKANPSQFGALAE 406 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 + + +K + + + G+ V +R F P Sbjct: 407 KYSD--------------DKGSATQKGSIGWVGQQNALTPV----------YRSFIFSKP 442 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + V G Y +++ E A+++ + VKK + +T+++ + A V Sbjct: 443 VGTIDLVESEFG-YHIIRVDE---AKNKTGYQFAHLVKKIEPSKETSDKAFNDARVYVQS 498 Query: 510 Y-SKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFS------GPVEMVK 561 +K K+F + KN G T + R + D + + Sbjct: 499 VENKSVKDFTTLAKNKGYDTKETEGLERFATMIGENLPNDQDDAILAWAFGKKTDKGATN 558 Query: 562 CFPIENGLSYVV 573 F NG VV Sbjct: 559 LFTTANGDYIVV 570 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 59/366 (16%), Positives = 115/366 (31%), Gaps = 27/366 (7%) Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAE----EQGKSLSDISLGSFSKEY 319 SP + V++ +K A+ K F LAE ++G + S+G ++ Sbjct: 369 GSPAAQGVKRSKEEAKKLAETYLAEAKANPSQFGALAEKYSDDKGSATQKGSIGWVGQQN 428 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRIT 378 IFS G ++ FGY I V K F + K I ++ Sbjct: 429 ALTPVYRSFIFS-KPVGTI-DLVESEFGYHIIRVDEAKNKTGYQFAHLVKKIEPSKETSD 486 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 KA + + +E +++ + + + ++ + E + Sbjct: 487 KAFNDARVYVQSVENK--SVKDFTTLAKNKGYDTKETEGLERFATMI--GENLPNDQDDA 542 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 +L FGK + +G Y+ V + + V+ K + Sbjct: 543 ILAWAFGKKTDKGATNLFTTANGDYIVVHLIDKFDKGLAPASIARPLVEPILKKQLITKA 602 Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGP 556 V+ K K+ GA + TT +N + G + + F Sbjct: 603 VNEKIGN---------GGINAFMKSFGA-VKTTTNVNFGNGVIADVGIEPRVVGAAFGIK 652 Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMNKDLLDSVIAYLKSQYS 615 G V + +T SK P +K D + + + + + ++I L Sbjct: 653 ENT--SSKAIQGNEGVYYIITKSKTLPKGQKGDSLLENMNRSLKNKVEQTLIQSLIEAAD 710 Query: 616 VTVHDN 621 + + Sbjct: 711 IVDNRA 716 >gi|51894079|ref|YP_076770.1| putative post-translocation molecular chaperone [Symbiobacterium thermophilum IAM 14863] gi|51857768|dbj|BAD41926.1| putative post-translocation molecular chaperone [Symbiobacterium thermophilum IAM 14863] Length = 297 Score = 110 bits (274), Expect = 9e-22, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 120/401 (29%), Gaps = 125/401 (31%) Query: 14 AKIFLVVLFVPFLIWGLSDALFS--------VSGSSTVVSVGRQKVPFSSFINSWKQELG 65 A I L V ++ GL + + V +V +++ G Sbjct: 9 ATIALAV-VATLVVAGLGGYFVGSSLQRPGTGNDPAVVATVNGEQITRDEVHQKLMTYYG 67 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 ++D+++ +DQ G+ V E+ + Sbjct: 68 A---------------------AVVDDMILTRLVDQEAARAGVTVTDAEVEEEVEATKAA 106 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 +G D FS L++ G++E ++ D + + T V+ Sbjct: 107 YGGDLYFSWA-----LSQYGLSEAQFRDMLRRDMVATAVLRQ------------------ 143 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 P +A L +F++ + A + ++I Sbjct: 144 -------------------QLQPDDATLKAYFDEMQS---AEQTRKI------------- 168 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 V ++ +++A+E L G F QLA+ + K Sbjct: 169 -------------------------KVRHILVDTEEKANEIKARLDAGADFAQLAQAESK 203 Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 LG K + F+L G+ + + ++G+ I ++ Sbjct: 204 DTASAAKGGDLGLIGKGDTV-SEFEAAAFAL-NDGEISAPVQSTYGWHIIQ------AYQ 255 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + F++ K+ I Q K S ++ Y L E + ++ Sbjct: 256 LHFEQEKQTILEQYLNEKVSARLGTWYSELRENAQITNTLA 296 >gi|240849866|ref|YP_002971254.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup] gi|240266989|gb|ACS50577.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup] Length = 317 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +IS+ +L+A Y++ + ++ +KEA+ + L KG+ F ++A++ Sbjct: 137 KISDTDLEALYKEEVAALPKEDEVKARHILVKTRKEAEAIIKHLNKGENFEEIAKKSSTD 196 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG FS + D+ F L + FG+ I + + + + Sbjct: 197 GSAAVGGDLGYFSHGQMVKP-FEDAAFGLKIGEYTKQPVESPFGWHIIKLEDRRLKQPPA 255 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK+ + Q+ + E + + +++ Sbjct: 256 FDDVKEMLRTQLIKKRYQELIVDLRSKMD 284 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 6/140 (4%) Query: 483 LTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +V K + +A ++ +K G+NF +I K + Sbjct: 148 KEEVAALPKEDEVKARHILVKTRKEAEAIIKHLNK-GENFEEIAKKSSTDGSAAVGGDLG 206 Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 + F + P+E+ + + K+ + ++ D L Sbjct: 207 YFSHGQMVKPFEDAAFGLKIGEYTKQPVESPFGWHIIKLEDRRLKQPPAFDDVKEMLRTQ 266 Query: 598 MNKDLLDSVIAYLKSQYSVT 617 + K +I L+S+ V Sbjct: 267 LIKKRYQELIVDLRSKMDVK 286 >gi|321313742|ref|YP_004206029.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5] gi|320020016|gb|ADV95002.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5] Length = 297 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 116/381 (30%), Gaps = 119/381 (31%) Query: 13 VAKIFLVVLFVPFLIWGLS---DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + I L L V + + + S ++ ++G + V ++ + + G Sbjct: 6 IWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYG---- 61 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 K L+++++ ++Q + L+ V E + Sbjct: 62 -----------------KSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKA---VN 101 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 N F D E EKE+ D + +++ Sbjct: 102 NSFYED--------EHTTEKEWKDQIRYNILLEELL-----------------------T 130 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R +D SN L ++ K K+ Y+ + RI Sbjct: 131 RDIDI--------------SNKELESFYHKNKELYQFDDSYRI----------------- 159 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306 +V +++EA E + LK G F +A E+ Sbjct: 160 -----------------------RHIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYT 196 Query: 307 -LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG ++ + IP + ++ +L + I S GY I + + T S Sbjct: 197 SPYGGDLGFVTEASDNIPSAYIEEAK-TLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFS 255 Query: 364 FQEVKKDIANQMRITKASEKV 384 F EVK I Q+ + + +K Sbjct: 256 FDEVKDQIRRQIAMDQLGDKA 276 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 9/120 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442 +E+ + + + L G+S + ++ P G + + Y E+ L Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKE 226 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 +P+ Y +Q+KE + AR +EV +++ + ++ + K Sbjct: 227 DEWSQEPIKVS-------NGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVK 279 >gi|148261232|ref|YP_001235359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum JF-5] gi|146402913|gb|ABQ31440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum JF-5] Length = 311 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ ++A Y+ + K PE Q++ Q+EA++ L KG KF LA++ Sbjct: 142 KLTDAAVKAYYDAHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F+K+ + AD+ F+L +H FG+ + + Sbjct: 202 PGAKNGGELGWFTKDEMVKP-FADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPP 260 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 +VK I Q+ + +++ K L+ L Sbjct: 261 LADVKDQIRQQITNKAVTAALEDARKGLDIKLFNPD 296 Score = 41.1 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 38/137 (27%), Gaps = 1/137 (0%) Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 V ++ K + + +A +++ + K G F + K N Sbjct: 157 VKAKQPEEVKARQILVKTQQEAEKIIAQLGK-GAKFSALAKKYSIDPGAKNGGELGWFTK 215 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 F+ P+ + + V + + PV + Q + Sbjct: 216 DEMVKPFADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPPLADVKDQIRQQITNK 275 Query: 602 LLDSVIAYLKSQYSVTV 618 + + + + + + Sbjct: 276 AVTAALEDARKGLDIKL 292 >gi|328950420|ref|YP_004367755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus hydrothermalis DSM 14884] gi|328450744|gb|AEB11645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus hydrothermalis DSM 14884] Length = 308 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 116/380 (30%), Gaps = 97/380 (25%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE- 78 ++ +PF + V V + + S ++ L + + G + E Sbjct: 10 LILLPFA---------AAQQDVVVAEVDGEPILLSELDLQFELFLRGVFGQQGVPITDEL 60 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVF 137 RAR L +IL+ LV + Q GL A V + +F F Sbjct: 61 RARFAPLKAQILERLVRDRVVLQAARKAGLAASEEAVRERLMGIKE------QFPDSAAF 114 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 S L GI D +++ ++ +RP + R Sbjct: 115 ESALEASGIPS---EDVLLQLMREAQTYNNYLDWLRP-------------QLR------- 151 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 S + ++ + ++ PE +S+ Sbjct: 152 ----------ISEPAMRLYYYLDRASFAEPEELCVSH----------------------- 178 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLG 313 ++ ++EA+ + L G+ F LA + G + + +LG Sbjct: 179 -----------------ILVRTREEAEAVLERLNAGEAFEDLANQLSIDPGSNTTGGALG 221 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 + + L + G+ T + FG+ + + +P+ F+ V+ +I Sbjct: 222 CHPAGTFIEP-FERAARRL-EVGELTRTPVESEFGFHVIRLDGFRPARVPPFEAVRGEIE 279 Query: 373 NQMRITKASEKVKEDYKRLE 392 + + + ++R E Sbjct: 280 ARFLDRAVRQHLDYLFERAE 299 Score = 38.0 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 7/115 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 +E+ + + E L G + ++++ + SID G I E+ R+ Sbjct: 184 REEAEAVLERLNAGEAFEDLANQL---SIDPGSNTTGGALGCHPAGTFIEPFERAARRLE 240 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + + +++ PAR E V +++ + + + Sbjct: 241 VGELTRTPVESEF----GFHVIRLDGFRPARVPPFEAVRGEIEARFLDRAVRQHL 291 >gi|49473855|ref|YP_031897.1| peptidyl-prolyl cis-trans isomerase [Bartonella quintana str. Toulouse] gi|49239358|emb|CAF25691.1| Peptidyl-prolyl cis-trans isomerase [Bartonella quintana str. Toulouse] Length = 317 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 22/221 (9%) Query: 182 AKRFYFENRSV-------DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 RF E R + D VL + D + A ++K A + Sbjct: 76 LVRFPDEQRRITVLKAYLDMQVLAKAAISKGIDKTEA-----YDKR----MAVMRDNVLQ 126 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 L+ + IS+ +L+ Y K + ++ +KEA+ + L KG+ Sbjct: 127 QLYFKQMIVDQ--ISDTDLETLYNKEVAALPKEDEVKARHILVKTKKEAEAIIKRLSKGE 184 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A++ S LG FS + D+ F L + FG+ + Sbjct: 185 SFEAVAKKNSTDGSAAVGGDLGYFSHGQMVKP-FEDAAFGLKVGEYTKKPVESPFGWHVI 243 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 V + + F +VK+ + Q+ + + + + ++ Sbjct: 244 KVEDRRLKQPPIFDDVKEMLRTQLIKERYQKLIVDLRNTID 284 Score = 42.3 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 1/131 (0%) Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546 + + K + +A ++ SK G++F + K + + Sbjct: 157 EDEVKARHILVKTKKEAEAIIKRLSK-GESFEAVAKKNSTDGSAAVGGDLGYFSHGQMVK 215 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 F V P+E+ + V KV + ++ D L + K+ + Sbjct: 216 PFEDAAFGLKVGEYTKKPVESPFGWHVIKVEDRRLKQPPIFDDVKEMLRTQLIKERYQKL 275 Query: 607 IAYLKSQYSVT 617 I L++ V Sbjct: 276 IVDLRNTIDVK 286 >gi|91776233|ref|YP_545989.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] gi|91710220|gb|ABE50148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] Length = 272 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 79/188 (42%), Gaps = 8/188 (4%) Query: 219 KYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + +Y A E +L + + + KK +S +++ YEK K++ E + ++ Sbjct: 84 DKQPDYLAKEELTRRELLVNTFLQDYIKKNPVSEADIKLAYEKYKQELGDKEY-SARHIL 142 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSL 332 + EA + L KG F +LA+E+ K LG FS + +D++ L Sbjct: 143 VSTEAEAKDIIAQLGKGGDFAKLAKEKSKDPGSQEKGGDLGWFSAAGMVKP-FSDAVVKL 201 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K T + FG+ + + + + + S+ +VK + Q++ + + + + + Sbjct: 202 QKGKYTTTPVQTQFGWHVIKLEDTRATQPPSYDDVKDGLQKQLQQRNLEKLLTDLRSKAK 261 Query: 393 EFLALGTS 400 G + Sbjct: 262 IEAPAGAT 269 Score = 41.5 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 10/123 (8%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-- 557 ++A ++ + K G +F + K + +F G+ + FS V Sbjct: 146 EAEAKDIIAQLGKGG-DFAKLAK----EKSKDPGSQEKGGDLGWFSAAGMVKPFSDAVVK 200 Query: 558 ---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 P++ + V K+ +++ D L + + + L+ ++ L+S+ Sbjct: 201 LQKGKYTTTPVQTQFGWHVIKLEDTRATQPPSYDDVKDGLQKQLQQRNLEKLLTDLRSKA 260 Query: 615 SVT 617 + Sbjct: 261 KIE 263 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 96/276 (34%), Gaps = 43/276 (15%) Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 + +G+ F+ + +V +V + + S + K+ G V+ + Sbjct: 12 VAFGMLQPAFAAGTNGSVATVNGKPIKQSLYDYIAKEASSR-----GQTVDD------NV 60 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGE----------------IARSPLFHGKD 129 I++ L+ + Q + GL+ + E I ++P+ D Sbjct: 61 KNVIINKLIGSELIYQEAQRTGLDKQPDYLAKEELTRRELLVNTFLQDYIKKNPV-SEAD 119 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 K +++ + L + + + + + D++ G + L +++K + Sbjct: 120 IKLAYEKYKQELGDKEYSARHIL--VSTEAEAKDIIAQLGKGGDFAKLAKEKSKDPGSQE 177 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEI 248 + D + + S+AV+ K Y P + + + + + Sbjct: 178 KGGDLGWFSAAGMVKPF--SDAVVK----LQKGKYTTTPVQTQFGWHVIKLEDTRATQPP 231 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 S D+++ +K + R +E+L+ + +A Sbjct: 232 SYDDVKDGLQKQL------QQRNLEKLLTDLRSKAK 261 >gi|294101095|ref|YP_003552953.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium colombiense DSM 12261] gi|293616075|gb|ADE56229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium colombiense DSM 12261] Length = 282 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 6/157 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297 + + + +S E + Y + + P ++ N++EA + +K K F Sbjct: 116 LEKMFGNVSVSEKEARDYYTAHVTDFMIPSQIRASHILVENEEEAKRIREEIKTEKITFE 175 Query: 298 QLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A++ S LG F + + + + +L KKG+ + + +G+ I + Sbjct: 176 DAAQKYSSCPSKAQKGDLGYFQSDQVV-PEFSQAAGAL-KKGEISAPVKSQYGWHIIRLE 233 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + KP F+EVK I + K ++ ++ +RL Sbjct: 234 DKKPGSLQPFEEVKGQIETNLLREKRAQIYTDETERL 270 >gi|95930211|ref|ZP_01312949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas acetoxidans DSM 684] gi|95133674|gb|EAT15335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas acetoxidans DSM 684] Length = 292 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 121/359 (33%), Gaps = 86/359 (23%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 ++V + F+N+ + + +K ++ E + ++ +++ + Q Sbjct: 6 ITVNGTPISQFDFVNAMQSYSMELYRKTADQLSEEEIEQ--VQGLAVEQIIARELIFQTA 63 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 G A ++ E+ + N S + F + L + GI++ Y + LS Sbjct: 64 LAQGAIATDEQIKAEMDKVMA-----NFPSEEEFFATLEKAGIDQDSYYRMLRQDLSVKM 118 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 + + + P+ + ++++ D Sbjct: 119 MTE---------------------------------KKLADAPSPAAEEVKAFYDENPDK 145 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + P R S+IL I+++ D N++EA Sbjct: 146 MKKPGQVRASHIL---------IKVTED---------------------------NREEA 169 Query: 284 DEAFQSLKK-----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + + LK +F LA + S LG F + + FSL + Sbjct: 170 QKKIEELKNEVTGDAAQFGDLARQHSACPSKDKGGDLGFFGPGSMVK-EFDQAAFSL-EP 227 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G + ++ FGY + V+ K +++ +EV I + ++ K + ++ + ++E Sbjct: 228 GQISDIVETQFGYHLILVTERKDPESLTLEEVAPQIESFIKDQKGAILLQAWVEEMKEK 286 >gi|326790698|ref|YP_004308519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] gi|326541462|gb|ADZ83321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium lentocellum DSM 5427] Length = 352 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 101/364 (27%), Gaps = 80/364 (21%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF---VVNSERARSVGLDKKILDN 92 S + + + +V ++ + + G ++ + + GL L Sbjct: 45 SEAAKTVLATVNGVEILQGDLDKVYNSMVAEYQSYYGESEEMLTFLKQQKPGL----LTG 100 Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 L++ L Q +++ + V ++ + + + + G + Y Sbjct: 101 LINRELLKQKAKELNITCTDEEVEK------IYSDLVSTYGEEQVQEVIKANGFTTETYK 154 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + + + V G ++ Sbjct: 155 AQIKEDEALSKVQEKMQEG---------------------------------EIKVTDED 181 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 + +++++ D++ + +IL +++++ + +K Sbjct: 182 VKKYYDENIDSFTTGAGANMEHIL---------VKVADTDTDDYKKK------------- 219 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI------SLGSFSKEYIPDVSLA 326 + + + G F +L + D LG E + Sbjct: 220 ------CDEAVKTIEKEITDGTTFDELKTKYTADGIDTNMYVVEDLGFVQYEQPNYDTAF 273 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + K+G+ + + SFGY V IK ++VK I + + + Sbjct: 274 LAGAKEVKEGEISKAVKSSFGYHFIKVEGIKDKEVKPLEDVKAQITTTLENEQKNAYYNA 333 Query: 387 DYKR 390 + Sbjct: 334 KLEE 337 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 4/125 (3%) Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 +K E K +E+ + GT+ DE+ + ID + E Sbjct: 217 KKKCDEAVKTIEKEITDGTTFDELKTKYTADGIDTNMYVVEDLGFVQYEQPNY----DTA 272 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F K+ + Y +++++ + LE+V + + + + Sbjct: 273 FLAGAKEVKEGEISKAVKSSFGYHFIKVEGIKDKEVKPLEDVKAQITTTLENEQKNAYYN 332 Query: 501 SKANQ 505 +K + Sbjct: 333 AKLEE 337 >gi|206971880|ref|ZP_03232829.1| foldase protein PrsA [Bacillus cereus AH1134] gi|206733265|gb|EDZ50438.1| foldase protein PrsA [Bacillus cereus AH1134] gi|326940633|gb|AEA16529.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 280 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 93/237 (39%), Gaps = 27/237 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VLN+++ + + L + Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKVTDEEVT-KQLKELK 82 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 83 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK---------P 133 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 134 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 193 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 194 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 247 >gi|223039645|ref|ZP_03609931.1| foldase protein PrsA [Campylobacter rectus RM3267] gi|222879028|gb|EEF14123.1| foldase protein PrsA [Campylobacter rectus RM3267] Length = 270 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 19/246 (7%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWF 217 + + S++ V L + D + + Sbjct: 17 LNAAVHATVNGSDITDKDIAFTLAAMPGVTLEQLPKDTQKKVIDETISRKLLLDEAKKSG 76 Query: 218 EKYKDNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + D Y+A E K + + +++S +E+ Y KNK ++ P + + Sbjct: 77 LEKTDEYKAALEEVKDNIALDLWMKRIFDNVKVSENEISDFYNKNKAEFAVPAQVKAKHI 136 Query: 276 VFPNQKEADEAFQSLK--KG----KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325 + +K+A++ +LK KG KKF +LA+ +QG + + LG F + + Sbjct: 137 LVAAEKDANDVIAALKGLKGDALVKKFEELAKAKSTDQGSAENGGELGWFGQSQMVKP-F 195 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 AD+ F+L K + +FGY + + K + TV EVK I +++ K ++ Sbjct: 196 ADAAFALKKGEITAKPVKSNFGYHVILKEDSKAAGTVGLNEVKPQIEGNLKMEKFRNDIR 255 Query: 386 EDYKRL 391 + L Sbjct: 256 KRGDEL 261 >gi|316931933|ref|YP_004106915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris DX-1] gi|315599647|gb|ADU42182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris DX-1] Length = 305 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 ++ DV E K +++ ++ YE+ ++ + ++ + EA + LKKG Sbjct: 117 LMDDVLAAEGKAATTDEAMKKVYEEAAKQISGEQEVHARHILVETEDEAKAVAEELKKGA 176 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+++ K LG F+K+ + + F+L + G + + FG+ I Sbjct: 177 DFAELAKKKSKDPGASDGGDLGFFTKDQMV-PEFSAVAFAL-EPGKISDPVKSQFGWHII 234 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 V + SF +VK I + S+ V + + + Sbjct: 235 KVEEKRNRKPPSFDQVKAQIEQYVARKAQSDYVSKLRQAAK 275 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 14/221 (6%) Query: 399 TSMDEISRREKIVS--IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 MD S++E +++ ID+ +V A +D K ++ A + DD L+ + Sbjct: 69 AQMDPASKKENVLAFLIDMKIVAKAAEDKKIQDSADFKKRLDFARNRLLMDDVLAAEGKA 128 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 A D + +K+ +++ +V V+T +E + A +L K+G + Sbjct: 129 ATTDEA-----MKKVYEEAAKQIS-GEQEVHARHILVETEDEAKAVAEEL-----KKGAD 177 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576 F ++ K ++ + + + F+ + P+++ + + KV Sbjct: 178 FAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKV 236 Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + D+ + + Q + + ++ L+ V Sbjct: 237 EEKRNRKPPSFDQVKAQIEQYVARKAQSDYVSKLRQAAKVE 277 >gi|326404647|ref|YP_004284729.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum AIU301] gi|325051509|dbj|BAJ81847.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum AIU301] Length = 311 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ ++A Y+ + K PE Q++ Q+EA++ L KG KF LA++ Sbjct: 142 KLTDAAVKAYYDSHYVKAKQPEEVKARQILVKTQQEAEKIIAQLGKGAKFSALAKKYSID 201 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F+K+ + AD+ F+L +H FG+ + + Sbjct: 202 PGAKNGGELGWFTKDEMVKP-FADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPP 260 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 +VK I Q+ + +++ K L+ L Sbjct: 261 LADVKDQIRQQITNKAVTAALEDARKGLDIKLFNPD 296 Score = 41.1 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 38/137 (27%), Gaps = 1/137 (0%) Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 V ++ K + + +A +++ + K G F + K N Sbjct: 157 VKAKQPEEVKARQILVKTQQEAEKIIAQLGK-GAKFSALAKKYSIDPGAKNGGELGWFTK 215 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 F+ P+ + + V + + PV + Q + Sbjct: 216 DEMVKPFADAAFALKPGTYTKTPVHSQFGWHVIESQGKREKPVPPLADVKDQIRQQITNK 275 Query: 602 LLDSVIAYLKSQYSVTV 618 + + + + + + Sbjct: 276 AVTAALEDARKGLDIKL 292 >gi|229102919|ref|ZP_04233612.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28] gi|228680505|gb|EEL34689.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28] Length = 293 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 86/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ +T+ ++ KD + + + Sbjct: 65 YQMVLSKALLDKYKVSDEEVTKQVKEAKDKMGDNFKETLEKIGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + S+GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKL-NAGQVSEPVKTSYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F+EVK I + + + + +++ L + + K Sbjct: 235 E--LKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKET 286 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 136 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFG 195 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + EEV Sbjct: 196 PGQTVKEFEEAAYKLNAGQVSEPVKTSY--------GYHIIKVTDKKE--LKPFEEVKDK 245 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 246 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 273 Score = 40.7 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 155 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P +E KDK L Q +D V+ L Sbjct: 215 VSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V+D Sbjct: 275 DIKVNDK 281 >gi|94967188|ref|YP_589236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] gi|94549238|gb|ABF39162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] Length = 317 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 113/365 (30%), Gaps = 81/365 (22%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V K+ +K ++ Q+ ++ L IL L++ L Q Sbjct: 2 ARVNGHKITRPEVEKYYKNQIAGSPQQ------PSDEQADNLRLNILRELINNEILMQRA 55 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 E +GL A V ++ + +S + F +RL GI ++ + ++ Sbjct: 56 EKLGLLATDEEVDSKVNAAKA------PYSQEQFDARLKERGITMDDFRRDLRRSITIDK 109 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V+ + + + + S+ ++ ++ +K Sbjct: 110 VIN---------------------------------KEITSKINVSDGDISSYYNAHKAE 136 Query: 224 YRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 + E ++ IL +++ + N + +K+ Sbjct: 137 FNLIEPQYHMAQILVTPQPNP--------QVKNLQKANND--------------AEAKKK 174 Query: 283 ADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 + L G+ F +A + S + LG + + LA + K G + Sbjct: 175 IQQLVNRLDSGEDFASVAMNYSEQPEISPNGGDLGFIPESSLKGDKLAFDAVARLKPGQY 234 Query: 339 TPVI-------HGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYK 389 T V+ GY I + + S + V++ I Q+R + Y+ Sbjct: 235 TGVLPIVDPSNKQVLGYRILKLIAKESSGQRELNDPRVQQAIREQLRDGREQLLKAAYYE 294 Query: 390 RLEEF 394 + + Sbjct: 295 SVRDK 299 >gi|90567994|dbj|BAE92208.1| peptidyl-prolyl cis-trans isomerase C [Flavobacterium psychrophilum] Length = 701 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 91/621 (14%), Positives = 194/621 (31%), Gaps = 58/621 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR+ ++++ + + F+I L + + ++ + F F Sbjct: 4 LSKIRQ--KSFLVIAVVGIALFAFIIGALIENGGFGKTARNAGTINGVDISFEEFREKVD 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + G + +A + + D V L++ E +GL ++ I Sbjct: 62 M---AQKSQPGQNMTIMQATN-----GVWDQEVRRVLLEKQCEKLGLRIGDDQLINIIKE 113 Query: 122 SPLFH------GKDNKFSHDVF-VSRLAREGINEKEY------IDHYTKMLSRTDVVGMF 168 P F KF F + L+ + + +++ + M Sbjct: 114 DPQFAQTPQFLNAAGKFDKAKFNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMI 173 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAP 227 G + + D + + + +P++A L + +K + Y+A Sbjct: 174 QSGFYTTQAEAKFNYELENNKVTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKAD 233 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + Y+ + + +I D++ + P +EA Sbjct: 234 ESRELEYVFVEDKASAEDKKIIEDKVNGLLNPVADN--------------PVTTTVNEAR 279 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K ++ D + SK+ +P V A+++F+LA G F Sbjct: 280 VGFKNASNLVEFVNANSDIKYDST--YVSKKDLP-VEHAEALFNLA-PGQFYGPYMFGDY 335 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I K + I T+ K ++ K + A+ ++ Sbjct: 336 YGITKNLGRKVNANAK----ASHILISYEGTQVPNKKEKRTKEQAKAKAVSLLAQVLANP 391 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + D + G + F F +P+ K V G ++ Sbjct: 392 SAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNFVFSNPVGKIGLVETDFGFHIINV 451 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + R L + K + T+++V + A + E + K F K + Sbjct: 452 TDKQDAVRLATLAQ------KISPSEVTSDKVFTTATKF--EMAANEKAFDVAAKEMKLI 503 Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPV 584 + ++ +D + G + + VF +K F I G + KV + + P+ Sbjct: 504 VAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKRFNIPTGHVIARLKKVNEAGLLPI 563 Query: 585 QEKD-KFISYLTQMMNKDLLD 604 +E + L +L+ Sbjct: 564 EEAKMAIGTKLRNEKKAELIK 584 >gi|149194292|ref|ZP_01871389.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter mediatlanticus TB-2] gi|149135467|gb|EDM23946.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter mediatlanticus TB-2] Length = 292 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 16/236 (6%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 V G + + ++ + ++ + L +HV + LT + +K K P+ Sbjct: 49 VNGKKITVAEINAYLQGITGDKRIKLQDLPAQHVKKLVKDYADTLTVYEKKAKSIENTPQ 108 Query: 229 YKRISYIL---FDVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEAD 284 +K L + ++ I+IS+ E +A YEKNK+ +F S ++ ++K A Sbjct: 109 FKAAKMKLAVDMWLKKEFDNIKISDKEAKAFYEKNKDVFFKSTPQIKARHILVKDEKLAK 168 Query: 285 EAFQSLK--KG----KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + LK KG +KF +LA++ + LG FS + + A + SL K Sbjct: 169 KLINELKGLKGKALEEKFAELAKKYSIGPSKVQGGELGWFSPKQMV-PEFAKAAESL-KP 226 Query: 336 GDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ T + FGY I V K + + +++VK I ++ K ++++ K+ Sbjct: 227 GEITLKPVKTRFGYHIILVEGKKSNTYIPYEKVKDQIIGYLKNQKLKKELETLKKQ 282 >gi|268679964|ref|YP_003304395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum deleyianum DSM 6946] gi|268617995|gb|ACZ12360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum deleyianum DSM 6946] Length = 270 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 18/247 (7%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-------PSNAVLTQW 216 + + ++ + + L I + + + Sbjct: 18 LNAAVYATVNGEDVTDQDIAVLMRAMQGAKFESLPADAKQKIVEQAVERKLLTKEAVKSG 77 Query: 217 FEKYKDNYRAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 EK K+ A + + L + + +++ E++ Y+KN +K+ P + Sbjct: 78 VEKEKEYTDALKRIKEDLSLELWMKKIYNNVKVDAKEVKDYYDKNADKFMQPATVKARHI 137 Query: 276 VFPNQKEADEAFQSL------KKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLA 326 + +++EA A + L K KF++LA + S LG F+ + A Sbjct: 138 LVKSEEEAKAAIKELSGLSGQKLNDKFVELATTKSTGPSGQGGGDLGWFAANQMVKP-FA 196 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 D+ F+L K + FG+ + V + K + SF+ VK I N +++ K +V Sbjct: 197 DAAFALKKGEYTKSPVQTQFGFHVILVEDTKAAEKASFEMVKPQIENGLKMEKFRVEVAN 256 Query: 387 DYKRLEE 393 ++L + Sbjct: 257 KAQKLRQ 263 >gi|210620911|ref|ZP_03292328.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275] gi|210155123|gb|EEA86129.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275] Length = 260 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 82/190 (43%), Gaps = 16/190 (8%) Query: 228 EYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---- 282 E I+ + +++ + +E +A Y+++++++ E+ ++ + E Sbjct: 73 EQVTINMLKQHALNQLFMAAMPTEEEAKAYYDEHQDEFKVDEMAKARHILIKAENEDEFA 132 Query: 283 -----ADEAFQSLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 A E + +K G+K F Q A + S LG F K + +++FS+ Sbjct: 133 AAEARAKEIAEEIKAGEKTFEQAAIDYSDCPSNMQGGDLGLFGKGQMV-PEFEEAVFSM- 190 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +G+ + + SFGY + V + F+EVK +I ++ K + ++ L E Sbjct: 191 NEGELSEPVKTSFGYHLIKVEERHKAGVSKFEEVKDEILGKLAQLKQLKAYEDKVAELRE 250 Query: 394 FLALGTSMDE 403 A ++++ Sbjct: 251 KYASAYTLND 260 >gi|27375316|ref|NP_766845.1| hypothetical protein blr0205 [Bradyrhizobium japonicum USDA 110] gi|27348452|dbj|BAC45470.1| blr0205 [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E K + D ++ YE+ ++ + ++ + EA L KG F +LA Sbjct: 136 ANEGKAATTPDAMKKVYEEASKQITGEQEVRARHILVETEDEAKAVKAELDKGADFAELA 195 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +++ K LG F+KE + + F+L + G + + FG+ I V + Sbjct: 196 KKKSKDPGSADGGDLGFFTKEQMV-PEFSAVAFAL-EPGKISDPVKSQFGWHIIKVEEKR 253 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F++VK I + ++ V + + Sbjct: 254 NRKAPDFEQVKAQIEQYVTRKAQADYVAKLRTEAK 288 Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 53/143 (37%), Gaps = 4/143 (2%) Query: 477 RKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534 + EE + +++ + E +A + E K G +F ++ K + + Sbjct: 150 KVYEEASKQITGEQEVRARHILVETEDEAKAVKAELDK-GADFAELAKKKSKDPGSADGG 208 Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + + + + F+ + P+++ + + KV + + ++ + + Sbjct: 209 DLGFFTKEQMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKAPDFEQVKAQI 267 Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617 Q + + +A L+++ V Sbjct: 268 EQYVTRKAQADYVAKLRTEAKVE 290 >gi|328465802|gb|EGF36990.1| protein export protein [Listeria monocytogenes 1816] Length = 266 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 26/207 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390 ++ KK + + +E +++ K+ Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKK 260 >gi|239832961|ref|ZP_04681290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum intermedium LMG 3301] gi|239825228|gb|EEQ96796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum intermedium LMG 3301] Length = 456 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 12/244 (4%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + A A + ++ K+ E+ R + + Sbjct: 212 QFSRLPAEQRRLAAL---AALIDIKAMAGEAEKEKL-DQSKEFKDRMEFLRERALHNEYF 267 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+D+++A Y+K ++ ++EA+ + L G KF LA Sbjct: 268 KDAVVDKISDDDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLAGGAKFEDLA 327 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +E G + + LG F++ + + F+L + FG+ + + + + Sbjct: 328 KESSTDGTASNGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQSQFGFHVIQLEDRR 386 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK----RLEEFLALGTSMDEISRREKIVSI 413 +F +VK I + + + E VK+ ++ D + +E Sbjct: 387 TKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAMKDAAAAQEGADKD 446 Query: 414 DLPL 417 D P Sbjct: 447 DAPE 450 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 54/159 (33%), Gaps = 3/159 (1%) Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + D+++ + V+ + + + ++A +++ G F D+ K Sbjct: 278 DDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLAGGAKFEDLAKESSTDG 334 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 +N + + F+ P+++ + V ++ + + D Sbjct: 335 TASNGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQSQFGFHVIQLEDRRTKQPPAFD 394 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + ++ ++ + L+ + D +++ + Sbjct: 395 QVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAM 433 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 70/225 (31%), Gaps = 25/225 (11%) Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 P ++ A +L K AE++ S E++ + +L + F A Sbjct: 216 LPAEQRRLAALAALIDIKAMAGEAEKEKLDQSKEFKDRM--EFLRERALHNEYFKDAVVD 273 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + +++ + + + ++R K KE+ + + + LA Sbjct: 274 KISD-------------DDVRARYDKEIAAMPPQV--EVRARHILVKTKEEAEAIIKKLA 318 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G +++++ G E +P E+ F + P Sbjct: 319 GGAKFEDLAKESS----TDGTASNGGDLGYFTEGQMVPEFEKAAFAL----KPGEYTKEP 370 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + +Q+++ + ++V ++ + E V Sbjct: 371 VQSQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRERYVETVKK 415 >gi|164688476|ref|ZP_02212504.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM 16795] gi|164602889|gb|EDQ96354.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM 16795] Length = 250 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 67/162 (41%), Gaps = 6/162 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 ++ ++++++E QA YE NK + +PE + ++ ++++A+E +K G F Sbjct: 86 NQILTSVKLTDEEKQAFYEANKTNFSNPETANAKHILVDSEEKANEILAQIKAGDVTFED 145 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A S LG+F + + ++ F++ GD + + FGY + + Sbjct: 146 AARANSTCPSKDQGGDLGTFGRGQMV-PEFEEATFAM-NVGDVSEPVKTQFGYHLIKLEA 203 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 +++E+ + + K E K ++ Sbjct: 204 KNEPSIPAYEEIADKVEKTLMFQKQGEVYKNKLDEVKAKFGD 245 >gi|91776502|ref|YP_546258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] gi|122070650|sp|Q1GZC0|SURA_METFK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|91710489|gb|ABE50417.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus flagellatus KT] Length = 437 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 51/434 (11%), Positives = 131/434 (30%), Gaps = 63/434 (14%) Query: 21 LFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 L F + +S V+ V V + + + + + + ++ G + Sbjct: 14 LIALFFFFSISAMAAEVAKMDRIVAIVDQGVITEKELEDRIQTVIAQLEKQ-GTQLPPRD 72 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K+IL+ L++ Q+ GL D ++ I R + NK S F Sbjct: 73 V----LQKQILERLINDRLQLQYAAQTGLRVDDAQLDKTIERI----AEQNKLSTGEFRK 124 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSV-DYIVL 197 L EGI +++ + + + + + +D + D + Sbjct: 125 ALEAEGIPYRKFREDIRNEIILARLREREVDNRVNVTESEIDNFLTTQSSRNDIQDEFEV 184 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPE------YKRISYILFD-----------VH 240 + + A + + L + K + + + Y Sbjct: 185 AHILIRAPEESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSDAPNALEGGILGWKAS 244 Query: 241 EKEKKIEISNDE-------------------LQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 + + + + L+ + + V ++ Sbjct: 245 SQLPSLFVDALQALQPGQLSPVLRSPNGYHILKLLNRRGGSSPLVVDQTHVRHILIKLSE 304 Query: 279 ------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSI 329 +++ + + L G F +LA + + S LG + + ++ Sbjct: 305 VVSELEAEQKINSIKERLDHGADFAELARQYSEDASANNGGDLGWTNAGDTV-PAFEKAM 363 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 +L + + + FG+ I V + ++ + + ++R KA + ++ Sbjct: 364 NALDIN-EISAPVRTPFGWHIIQVLERRK-QDMTQESARLKARQEIRARKADDAFQDWLS 421 Query: 390 RLEEFLALGTSMDE 403 L + + +++ Sbjct: 422 ELRDRAYVEYRLED 435 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 55/382 (14%), Positives = 112/382 (29%), Gaps = 62/382 (16%) Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 R + G+R + LD+ E + Sbjct: 86 RLQLQYAAQTGLRVDDAQLDKTIERIAEQNKLSTGEFRKALEAEGIP------------- 132 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN- 279 +R I E + ++ ++ E+ + + V ++ Sbjct: 133 YRKFREDIRNEIILARLREREVDNRVNVTESEIDNFLTTQSSRNDIQDEFEVAHILIRAP 192 Query: 280 -----------QKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSL 325 + +A+ A + L+ G F Q++ + L LG + +P + Sbjct: 193 EESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSDAPNALEGGILGWKASSQLPSL-F 251 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---VKKDIANQMRITKASE 382 D++ +L + G +PV+ GY I + N + + + V+ I ++ + Sbjct: 252 VDALQAL-QPGQLSPVLRSPNGYHILKLLNRRGGSSPLVVDQTHVR-HILIKLSEVVSEL 309 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + ++ ++E L G E++R+ Y E Sbjct: 310 EAEQKINSIKERLDHGADFAELARQ---------------------------YSEDASAN 342 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 G + TV + + + I E + V + K T E K Sbjct: 343 NGGDLGWTNAGDTVPAFEKAMNALDINEISAPVRTPFGWHIIQVLERRKQDMTQESARLK 402 Query: 503 ANQLVLEYSKEGKNFRDIGKNL 524 A Q + K F+D L Sbjct: 403 ARQEI-RARKADDAFQDWLSEL 423 >gi|182420516|ref|ZP_02643225.2| foldase protein PrsA [Clostridium perfringens NCTC 8239] gi|182624265|ref|ZP_02952050.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721] gi|177910483|gb|EDT72856.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721] gi|182380295|gb|EDT77774.1| foldase protein PrsA [Clostridium perfringens NCTC 8239] Length = 325 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 120/358 (33%), Gaps = 78/358 (21%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95 +TV +V +K+ + K + + G + + + + ++ +LV+ Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQSLVT 77 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L + +G++ + ++ F D F L EG E + Sbjct: 78 DKVLVAEADKLGIKPSEEDIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTF---- 130 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K + V+ +V+Y S+ + + Sbjct: 131 -KEFLKNQVIA----------------------EATVEYAT-------KDVKVSDEDIKK 160 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + + ++LF + +E Q Y++ + + Sbjct: 161 YYDENKQQFVVKAGADVKHLLFP----------TEEEAQKAYDEIQSGKTTF-------- 202 Query: 276 VFPNQKEADEAFQSLKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 D+ F +K K +AE G+ D + +F K+++ Sbjct: 203 --------DDLFNKYEKNKDPKKEPIAENLGR--VDYNNSNFDKDFMEG-------LKGL 245 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKR 390 K G+ + + SFGY I +NI T + ++ K+ I + + K E ++D ++ Sbjct: 246 KDGEISKPVKSSFGYHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQ 303 >gi|146296230|ref|YP_001180001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409806|gb|ABP66810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 335 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 81/359 (22%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGM--ISQKIGFVVNSERARSVGLDKKILDNLV 94 + + V V +K+ F ++K ++ + + + + + +LD L+ Sbjct: 32 IDENRAVAIVNGEKITKKEFSINYKSQIDYYGLDKAFLAQKVGSKTYEEQIKENVLDGLI 91 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 Q + + + K++ + F L G E EY D Sbjct: 92 VRQIELQQAKKRNIILTAQEKKA--IEDQINQYKNDPQNGLQFKQYLQTIGATEDEYKDQ 149 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 K + + S + Sbjct: 150 IIKSQIVSKLFNELTKNQTASMF----------------------------------EIE 175 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++ +K +Y + S+ILF ++S+ + Sbjct: 176 SYYNSHKTDYI---KVKASHILF---------KVSD----------------------SK 201 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIF 330 +K+A+E Q +K G+ F +LA++ + LG F K + D F Sbjct: 202 EETTKKKKAEEVLQMIKNGQNFEKLAKKYSEDENTKQKGGDLGYFRKGEMVK-EFEDVAF 260 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 SL G+ + ++ S+G+ I V++ K ++ +VK +I + + K + + + Sbjct: 261 SLG-IGEISGIVKTSYGFHIIKVTDRK---QLALNDVKDEIKSTIETQKKQQYFQSLIE 315 >gi|300853330|ref|YP_003778314.1| putative foldase-like protein [Clostridium ljungdahlii DSM 13528] gi|300433445|gb|ADK13212.1| putative foldase related protein [Clostridium ljungdahlii DSM 13528] Length = 247 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 5/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K+ +++ E Q YE NK+ Y PE + ++ + ++A + + + +G F + Sbjct: 86 SKVMNKVNVTDKESQDYYEANKDMYKKPERLKAKHILVDSIEKAKKISKEISEGMPFEEA 145 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ S SLG F++ + ++ FSL + + FGY + V Sbjct: 146 AQKYSTCPSKAQGGSLGEFARGQMV-PEFENAAFSL-DIDVVSEPVKTQFGYHLIKVEEK 203 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 S+ EVK I N + + + + K L Sbjct: 204 IEPSIASYDEVKNAIKNGLLQERQKYEYSKFNKEL 238 >gi|148269160|ref|YP_001243620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga petrophila RKU-1] gi|170287822|ref|YP_001738060.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2] gi|281411458|ref|YP_003345537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga naphthophila RKU-10] gi|147734704|gb|ABQ46044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga petrophila RKU-1] gi|170175325|gb|ACB08377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2] gi|281372561|gb|ADA66123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga naphthophila RKU-10] Length = 329 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 50/395 (12%), Positives = 122/395 (30%), Gaps = 86/395 (21%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIGF 73 IF++++ + ++G + + + S+ V V + L I+Q Sbjct: 5 IFVILVVLGISLFGQA----TTTSSTVVAIVNGNPITSDLLELEADIDGILRSIAQIDLR 60 Query: 74 VVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 N GL +++L++L+ + Q E G+ V E+ Sbjct: 61 FFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLVQQLAEKEGVGVSDEEVKKEV-------- 112 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + GI ++ + G + Sbjct: 113 ------EARLKETVETMGITLEDLDKFLQR------------AGYGDLESFKKRLHWHMK 154 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 S+ + + A + ++ + K+ YR P + Sbjct: 155 TQLSLQRL---QEKITQNATVTLEEAQNYYNQNKETYRIPAAVHLY-------------- 197 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 ++ ++ + DEA ++KG+ F+++A + Sbjct: 198 --------------------------RITTEDKSKMDEALSKIRKGEDFLEVATQV---A 228 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + LG + + + + IF + G +V+ V + S F+EV Sbjct: 229 TGGDLGWIEEGKL-EKDIESVIFDAPE-GAILGPFESEGKFVLYKVVEKRSSSYKKFEEV 286 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 K++I +++ K ++ + + ++ E + ++ Sbjct: 287 KQEIMDKLLADKKNQLWNDWFNKVFEEFKKNSQIE 321 >gi|319899225|ref|YP_004159318.1| peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73] gi|319403189|emb|CBI76748.1| peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73] Length = 317 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I++ +++A Y+K + ++ ++EA+ + L KG+ F ++A++ Sbjct: 137 KIADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEAVIKRLNKGENFEEVAKKDSTD 196 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG FS+ + ++ F+L + FG+ + V + + Sbjct: 197 GSSAVGGDLGYFSRGQMVKP-FEEAAFNLKVNEYTKKPVESPFGWHVIKVEDRRLKQPPV 255 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK + Q+ + + + + Sbjct: 256 FDDVKDVLRTQLIRERYQTLIPDLRSEVN 284 >gi|170764243|ref|ZP_02639032.2| foldase protein PrsA [Clostridium perfringens CPE str. F4969] gi|170714999|gb|EDT27181.1| foldase protein PrsA [Clostridium perfringens CPE str. F4969] Length = 325 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 119/358 (33%), Gaps = 78/358 (21%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95 +TV +V +K+ + K + + G + + + + ++ LV+ Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L + +G++ + ++ F D F L EG E + Sbjct: 78 DKVLGIEADKLGIKPSEEEIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTF---- 130 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K + V+ +V+Y S+ + + Sbjct: 131 -KEFLKNQVIA----------------------EATVEYAT-------KDVKVSDEDIKK 160 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + + ++LF + +E Q Y++ + + Sbjct: 161 YYDENKQQFVVKAGADVKHLLFP----------TEEEAQKAYDEIQSGKTTF-------- 202 Query: 276 VFPNQKEADEAFQSLKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 D+ F +K K +AE G+ D + +F K+++ Sbjct: 203 --------DDLFNKYEKNKDPKKEPIAENLGR--VDYNNSNFDKDFMEG-------LKGL 245 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKR 390 K G+ + + SFGY I +NI T + ++ K+ I + + K E ++D ++ Sbjct: 246 KDGEISKPVKSSFGYHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQKDLEQ 303 >gi|241763440|ref|ZP_04761494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] gi|241367382|gb|EER61703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] Length = 247 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 81/183 (44%), Gaps = 11/183 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGK 294 + ++ + + Y+ +++ +PE V ++ + +A++ + LK G Sbjct: 66 KDSAPSDAVAEGQARNIYKAKPDRFQAPEQVQVRHILIAGTDGGARAQAEKVLEELKAGA 125 Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F QLA+E+ LG F++ + ++ F+L + GD + ++ FG+ I Sbjct: 126 DFAQLAKERSADTGSGAKGGDLGLFARGRMV-PEFDEAAFALKQPGDLSGIVETKFGFHI 184 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA-LGTSMDEISRREK 409 + +P+ ++EV++++ ++R + + +++++ L +++ + K Sbjct: 185 LKLDARRPAGLRPYEEVREELIKEVRGKLQQDARVAEAEKVQQGLTINNEAIEAFAATHK 244 Query: 410 IVS 412 Sbjct: 245 AAP 247 Score = 39.2 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 7/144 (4%) Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ E L G ++++ + G +G+ V Sbjct: 110 ARAQAEKVLEELKAGADFAQLAKERSADTGSGAKGGDLGLFARGRMVPEFDE------AA 163 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 F P V G + +++ PA R EEV ++ K+ + + ++A Sbjct: 164 FALKQPGDLSGIVETKFG-FHILKLDARRPAGLRPYEEVREELIKEVRGKLQQDARVAEA 222 Query: 504 NQLVLEYSKEGKNFRDIGKNLGAS 527 ++ + + A+ Sbjct: 223 EKVQQGLTINNEAIEAFAATHKAA 246 >gi|150026459|ref|YP_001297285.1| hypothetical protein FP2430 [Flavobacterium psychrophilum JIP02/86] gi|149773000|emb|CAL44484.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 701 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 91/621 (14%), Positives = 193/621 (31%), Gaps = 58/621 (9%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR+ ++++ + + F+I L + + ++ + F F Sbjct: 4 LSKIRQ--KSFLVIAVVGIALFAFIIGALIENGGFGKTARNAGTINGVDISFEEFREKVD 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + G + +A + + D V L++ E +GL ++ I Sbjct: 62 M---AQKSQPGQNMTIMQATN-----GVWDQEVRRVLLEKQCEKLGLRIGDDQLINIIKE 113 Query: 122 SPLFH------GKDNKFSHDVF-VSRLAREGINEKEY------IDHYTKMLSRTDVVGMF 168 P F KF F + L+ + + +++ + M Sbjct: 114 DPQFAQTPQFLNAAGKFDKAKFNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMI 173 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAP 227 G + + D + + + +P++A L + +K + Y+A Sbjct: 174 QSGFYTTQAEAKFNYELENNKVTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKAD 233 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + Y+ + +I D++ + P +EA Sbjct: 234 ESRELEYVFVEDKASAVDKKIIEDKVNGLLNPVADN--------------PVTTTVNEAR 279 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K ++ D + SK+ +P V A+++F+LA G F Sbjct: 280 VGFKNASSLVEFVNANSDIKYDST--YVSKKDLP-VEHAEALFNLA-PGQFYGPYMFGDY 335 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 Y I K + I T+ K ++ K + A+ ++ Sbjct: 336 YGITKNLGRKVNANAK----ASHILISYEGTQVPNKKEKRTKEQAKAKAVSLLAQVLANP 391 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + D + G + F F +P+ K V G ++ Sbjct: 392 SAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNFVFSNPVGKIGLVETDFGFHIINV 451 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527 + R L + K + T+++V + A + E + K F K + Sbjct: 452 TDKQDAVRLATLAQ------KISPSEVTSDKVFTTATKF--EMAANEKAFDVAAKEMKLI 503 Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPV 584 + ++ +D + G + + VF +K F I G + KV + + P+ Sbjct: 504 VAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKRFNIPTGHVIARLKKVNEAGLLPI 563 Query: 585 QEKD-KFISYLTQMMNKDLLD 604 +E + L +L+ Sbjct: 564 EEAKMAIGTKLRNEKKAELIK 584 >gi|228915458|ref|ZP_04079047.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844105|gb|EEM89165.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 280 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNA--VLTQ 215 S ++V G + S+ + + +N S V VLN+++ + + L Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKATDEEVTKQIKELKT 83 Query: 216 WFEKYKDNYR------APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 + Y + + L EK K ++ E++ Y+ Sbjct: 84 KMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYK---------PK 134 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSL 325 ++ ++K A E + L G+ F LA++ + L F + Sbjct: 135 LQASHILVKDEKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGDLSEFGPGMMVK-EF 193 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + I SFGY I ++ K ++E K +I ++ + + Sbjct: 194 EDAAYKL-EVGQVSEPIKSSFGYHIIKLTGKKE--LKPYEEEKVNIRKELEQQRIQD 247 >gi|222100637|ref|YP_002535205.1| Basic membrane protein [Thermotoga neapolitana DSM 4359] gi|221573027|gb|ACM23839.1| Basic membrane protein [Thermotoga neapolitana DSM 4359] Length = 329 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 120/396 (30%), Gaps = 85/396 (21%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIG 72 K+FLV+L V + + + + S+ V V Q + L I+Q Sbjct: 3 KVFLVILLVTTATF---FSQATTTSSTVVAIVNGQPITSDLLELEADINGILKSIAQIDM 59 Query: 73 FVVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 N GL ++L++L+ + Q E G+ V E+ Sbjct: 60 RFFNVLTGTEEGLRLLLKYKMEVLNSLIDDLLIQQLAEKEGVGVTDEEVNAEV------- 112 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 + GI ++ G + K Sbjct: 113 -------EKRLKETVESMGITLEDLDKFLQ------------SAGYGDLETFKKRLKWHL 153 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 S+ + + A + ++ + K+ YR P + Sbjct: 154 KTQLSLQRL---QEKITQDATVTVEEAQNYYNQNKEAYRVPAAVHLY------------- 197 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ + + DEA ++KG+ F+++A + Sbjct: 198 ---------------------------RISAEEKGKIDEALSRIRKGEDFLEVATKV--- 227 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 + LG + + + L IF + G G+++ V + S F+E Sbjct: 228 ATGGDLGWIEEGEL-EKDLESVIFEAPE-GAILGPFESKGGFMLYKVVEKRASSYKKFEE 285 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 VK++I N++ K ++ + + + E + ++ Sbjct: 286 VKEEIINKLLSEKKAQIWNDWFNKTFEEFKKNSHIE 321 >gi|284046681|ref|YP_003397021.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei DSM 14684] gi|283950902|gb|ADB53646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei DSM 14684] Length = 390 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 55/399 (13%), Positives = 130/399 (32%), Gaps = 54/399 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML + K R +A VL G D + S+ V SV + + + Sbjct: 1 MLSSVTKTLRIVLALCAFFVLSFTVAACGGDDESGNDVPSNAVASVDGTPITKADYERWA 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE--ADHGRVWGE 118 + V+ + ++ I A L++ D ++ + Sbjct: 61 LINAKSPGAQGSPVIIPDP---PNYERCI-------AALERQSRDARARTTPSDSQLRAQ 110 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + E + + +L + D + + S Sbjct: 111 CRQV-------------------------ETQIMQQSMALLIQADWIEKEADELGVSVSD 145 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 D + R + + + + +R + Sbjct: 146 ADVQRTLEETKRQSFPRRGDYESFLRRSGMTERDI---------LFRL--RIQDLSTRIT 194 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + ++++ ++ A Y +N++++ PE R +E ++ + +A+EA ++++ G + Sbjct: 195 EKIQREAGDVTSAQITAYYNRNRDQFAVPERRDLEIILTRTEAQANEAKRAIESGTSWAA 254 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A + L ++ D +L + F+ A+ + G FG+ I V+ Sbjct: 255 AARRYSTDALSKGNGGRLLGVARGQQ-DRALDTAAFN-ARTDVIVGPVRGQFGWYIVRVT 312 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + P+ S E ++ I +R +S K+ + + +E Sbjct: 313 RVTPAKQNSLAESREQIRELLRQQGSSRKLNDFAREFQE 351 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 18/147 (12%) Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 ++D+ + T+A + + GTS +RR ++ +G Sbjct: 225 RRDLEIILTRTEAQ------ANEAKRAIESGTSWAAAARRYSTDALSKGNGGRLLGVARG 278 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTD 485 ++ L F D V G + W V++ PA+ L E Sbjct: 279 QQ------DRALDTAAFNA----RTDVIVGPVRGQFGWYIVRVTRVTPAKQNSLAESREQ 328 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSK 512 +++ + ++ +++ A + ++K Sbjct: 329 IRELLRQQGSSRKLNDFAREFQERWTK 355 >gi|157164251|ref|YP_001467105.1| holo-[acyl-carrier-protein] synthase [Campylobacter concisus 13826] gi|112801387|gb|EAT98731.1| foldase protein PrsA [Campylobacter concisus 13826] Length = 272 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 23/241 (9%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 ++ + G S L ++ KR + + ++ + + D + + K Sbjct: 39 LLSAAMPGFDASKLQPNEKKRIIDDLINRKLLLKDAKASGIEKDVD------YIKAVKA- 91 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 A E + + + I++S+ +L+ Y KNK P ++ ++K A Sbjct: 92 --AQEGIAVELYM---RKLFDGIKVSDSDLRDFYNKNKASMNQPAQARARHILVEDEKTA 146 Query: 284 DEAFQSLKK------GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 ++ LK KKF +LA ++G + LG F + + AD+ FS+A Sbjct: 147 NDIIAQLKNLKGEVLTKKFAELASQKSIDKGSAAHGGELGWFGQSQMVKP-FADAAFSMA 205 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 T + FGY + + K + TVSF++ K +I +++ K V++ + L + Sbjct: 206 NGTVSTKPVKTQFGYHVILKEDGKAAGTVSFEQAKPEIEQAVKMEKFQAAVRQKSEALRQ 265 Query: 394 F 394 Sbjct: 266 K 266 >gi|297588598|ref|ZP_06947241.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516] gi|297573971|gb|EFH92692.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516] Length = 250 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 5/159 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 F + + +S+++L+ YE +K+ + T ++ ++ A+E + + F Sbjct: 85 FAMANIINSVRVSDEDLKEYYENHKDNFKVQPTFTASHILVESEDLANEIKEKIDNDGDF 144 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA+E S LG+F + + +++ + GD + FGY I ++ Sbjct: 145 AELAKEYSTCPSKEQGGDLGTFQQGQMVK-EFENALIE-NEIGDIVGPVKTQFGYHIINI 202 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + SF+E K ++ + K + + +L+ Sbjct: 203 KDKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDKLQ 241 >gi|254457621|ref|ZP_05071049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD 1] gi|207086413|gb|EDZ63697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD 1] Length = 275 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 106/248 (42%), Gaps = 17/248 (6%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 +++ DV + + + K+ F + ++ ++ + Sbjct: 30 QITQQDVDTALMNATQGRFNQVPAEKQAEFRKQVLEQLIAKELVFGDAQKTGVLNSKDF- 88 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 KD + + + + V +K+ K+E+S+ EL+ Y+KNK+++ E + Sbjct: 89 ---KDEFVQVQERVKKELAIQVWQKQQLDKVEVSDKELKNYYDKNKDEFNEKETVHARHI 145 Query: 276 VFPNQKEADEAFQSLK--KGK----KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLA 326 + ++EA +SLK KG+ KFI+ A+ + S LG F++ + Sbjct: 146 LVKTEEEAKNIVKSLKSLKGEALKAKFIEEAKAKSTGPSGPKGGDLGYFAQGQMV-PEFN 204 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 D +F + K G + + FGY + ++ + K T++F EVK I ++++ K +++ Sbjct: 205 DKVFGM-KVGTVSEPVKTQFGYHVIYLEDKKAKKTLAFTEVKSFIEQRLKMEKFKVVMQD 263 Query: 387 DYKRLEEF 394 L+ Sbjct: 264 KMLELKNK 271 >gi|254446719|ref|ZP_05060194.1| hypothetical protein VDG1235_67 [Verrucomicrobiae bacterium DG1235] gi|198256144|gb|EDY80453.1| hypothetical protein VDG1235_67 [Verrucomicrobiae bacterium DG1235] Length = 546 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 62/556 (11%), Positives = 161/556 (28%), Gaps = 63/556 (11%) Query: 1 MLEIIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M+ I+ + + I VL V F++ + T F Sbjct: 1 MISWIQNKLQKHLLLVIIIFGVLIVAFVMQIGNMGPLGGGRERTA--------DLKFFDT 52 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNL-VSGATLDQFIEDIGL-EADHGRVW 116 E + +++ R+ + +L AT+ + E + Sbjct: 53 PLNTEAARARFQTDAQLSASLNRN----NRASGSLHFERATVLHIANQHSIPEPTKDELR 108 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGI----NEKEYIDHYTKMLSRTDVVGMFVGGM 172 I P F + +F + L + E + V + G Sbjct: 109 QYIETLPAFQNQLGQFDAQAYNMALDSLRLGGGVTESDLHRVLVDDYRIAKVYSVLRGAG 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 + + ++ S+ ++ + + +L + +E + Y+ PE + + Sbjct: 169 FVNESEILESLGQRLATWSILLAEVDLGAYAPEIEITEEMLQKHYEDFSFTYQTPERRVV 228 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYF--------SPEIRTVEQLVFPNQKEAD 284 YI + + ++++ + D+L +E N ++Y E E + F + A Sbjct: 229 DYIEINASDFIEQVKPTEDQLITYFESNLDRYQPEPAEPAEGEEAEPEEPITFEEARLAV 288 Query: 285 EAFQSLKKGKKFIQ-------------------------LAEEQGKSLSDISLGSFSKEY 319 + ++ LAE + K+ S + Sbjct: 289 RNDYRITAAREIASERAHDLVVSIIENDFQHDSEGLATILAELELKTSSPFAANQTPIGT 348 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + + + F L+ + ++ + ++ +N+ SF ++ I + +R + Sbjct: 349 VWGRDVVEQAFELSTERFYSEPLQVENRSIVLFYNNVIAPIVPSFDTLRDKIISDVRAEE 408 Query: 380 ASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + E L+ L + + + + + + + + Sbjct: 409 YRKVRAEYAVELKAKLEANADSEISFGAAAEEAGLSVTPFNEFTLVEPAEGL-----DRR 463 Query: 439 LLFRVFGKDDPLSKDHT-VALPDGSYMWVQIKESIPA---RDRKLEEVLTDVKKDWKTVK 494 L + D D + + + + +P D + +V +K + Sbjct: 464 ALSSMLELDSKEVSDFIRLNGENQGAYLYVVSKDVPEVSKDDPQYAQVEQSLKSLYGQFS 523 Query: 495 TAEEVSSKANQLVLEY 510 + + + + Sbjct: 524 AEQYIKTLMLEEQARL 539 Score = 57.7 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 80/257 (31%), Gaps = 14/257 (5%) Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFA 421 +F+E + + N RIT A E E + + D E + +I L + + Sbjct: 280 TFEEARLAVRNDYRITAAREIASERAH---DLVVSIIENDFQHDSEGLATILAELELKTS 336 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + ++ + F + + + S + I + Sbjct: 337 SPFAANQTPIGTVWGRDVVEQAFELSTERFYSEPLQVENRSIVLF-YNNVIAPIVPSFDT 395 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN---FRDIGKNLGASLLTTNQINRMD 538 + + D + + + + A +L + + F + G S+ N+ + Sbjct: 396 LRDKIISDVRAEEYRKVRAEYAVELKAKLEANADSEISFGAAAEEAGLSVTPFNEFT-LV 454 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKDKFISYLTQM 597 + +S + + V F NG + V + V V + D + + Q Sbjct: 455 EPAEGLDRRALSSMLELDSKEVSDFIRLNGENQGAYLYVVSKDVPEVSKDDPQYAQVEQS 514 Query: 598 M----NKDLLDSVIAYL 610 + + + I L Sbjct: 515 LKSLYGQFSAEQYIKTL 531 Score = 43.8 bits (102), Expect = 0.089, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 12/155 (7%) Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK-----EGKNFRDIGKNLGASLLTTN 532 EE V+ D++ E S +A+ LV+ + + + I L L T++ Sbjct: 280 TFEEARLAVRNDYRITAAREIASERAHDLVVSIIENDFQHDSEGLATILAEL--ELKTSS 337 Query: 533 QINRMDNE-NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591 +G D + Q F E P++ +V N V D Sbjct: 338 PFAANQTPIGTVWGRDVVEQAFELSTERFYSEPLQVENRSIVLFYNNVIAPIVPSFDTLR 397 Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + + + ++++Y+V + L Sbjct: 398 DKIISDVRAEEYR----KVRAEYAVELKAKLEANA 428 >gi|319952479|ref|YP_004163746.1| ppic-type peptidyl-prolyl cis-trans isomerase [Cellulophaga algicola DSM 14237] gi|319421139|gb|ADV48248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga algicola DSM 14237] Length = 706 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 81/577 (14%), Positives = 202/577 (35%), Gaps = 63/577 (10%) Query: 24 PFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81 F++ G+ ++A S+V V ++V F ++++ + S+ G A Sbjct: 24 AFVVSGIFSTNAFSGAKVGSSVADVNGEEVSIDGF----REQVEVASKSYGAS-----AS 74 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA------RSPLFHGKDNKFSHD 135 S+ + + + V A LDQ E +G+ + ++ + + P F ++ F Sbjct: 75 SMQIVNNVYEQNVRNAVLDQQFEKLGIVVEQDQIVNFLRTNPTYSQLPQFLNENGVFDES 134 Query: 136 VFVSRLAR------EGINE-KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 F++ +A G + + + + + G+ + + + + Sbjct: 135 KFINFIADLKKNNPAGYQQWLQEEKNIIRAAKEQIYFNLIRAGVGTTLKEGELDYKLAND 194 Query: 189 NRSVDYIVLN-NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + Y+ + + + S + + + + +K++++ + I ++ F+ K Sbjct: 195 KLDISYVRVPYTSILDSTVAVSKSEIEAYVKAHKEDFKQDNSRDIQFVYFEEKVSLKDEN 254 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +++ A N+ VF +K+ E + + I + + Sbjct: 255 EVKEKINALLNDNQ--------------VFSKEKDTTETVRGFRNTTDNIAFLDINSDTK 300 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 D K +P ++AD++ L+ G + ++ ++ + V Sbjct: 301 FDTI--YKPKSSLP-ANVADTLVKLS-IGTIYGPYRDGNTFKVSKLTGKRAGG-----NV 351 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 K + + AS +E + EE A + + ++ +K ++ L G Sbjct: 352 KAS-HILIAFSGASNAGEEVTRTKEE--AESKAKEVLAEAKKSGAVFADLAKENSDGPSG 408 Query: 428 KEVAAIPYKEQLL----FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 + + ++ F F ++ V D + V+++E L +V Sbjct: 409 PRGGDLGFFQKGAMVKPFNDFVFNNGAGSIGLVET-DFGFHIVKVEEKQD-----LYQVA 462 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543 V++ + +T + + A + + + F +I K + N++N MD Sbjct: 463 NLVREIEPSEETIDLLFQDATKFEMSTVENKSKFEEIAKKDNYVVRPVNKLNPMDENLPG 522 Query: 544 FG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 G + F+ E+ + Y V ++T Sbjct: 523 LGAQRPIVQWAFNADSEIGDVKRFDLNDGYAVVRLTA 559 >gi|30262343|ref|NP_844720.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames] gi|47778036|ref|YP_018981.2| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor'] gi|30256974|gb|AAP26206.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. Ames] gi|47551741|gb|AAT31456.2| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames Ancestor'] Length = 298 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 70 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 129 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 130 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 180 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 181 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 239 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 240 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 289 Score = 41.5 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 141 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 200 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 201 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 250 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 251 IRKDIEQQRLQDTTGKWKQQVVNELLKD 278 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 160 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 219 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 220 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 279 Query: 615 SVTVHDN 621 + V+D Sbjct: 280 DIKVNDK 286 >gi|197118895|ref|YP_002139322.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter bemidjiensis Bem] gi|197088255|gb|ACH39526.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter bemidjiensis Bem] Length = 351 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 103/294 (35%), Gaps = 47/294 (15%) Query: 139 SRLAREG--INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + + G I + + ML++ V L QA+ E + ++ Sbjct: 59 AVVRVNGTPITKLDVERAVKVMLAQNKVDQPI------PPELQKQAESAALEQLTSAELL 112 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE--------------------YKRISYIL 236 I D + ++ Q + + ++ K I Sbjct: 113 YQEASKSKIPDL-DKMIEQKVSQNRQKFKTEAELVEALSALEMTLPDLEEFTRKEIVLST 171 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKE------------A 283 + + K +S++E++ Y+ N +YF PE ++ ++ A Sbjct: 172 YIAEHFQNKASVSDEEVKKFYDDNLNQYFKKPESVKASHILVGTDEKSTPEDKKKAKEKA 231 Query: 284 DEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + + L+ G+ F +A+ + + LG F + + ++ F L K G+ + Sbjct: 232 EALLKRLQAGEDFAAVAKGESTCPSASEGGDLGEFGRGQMV-PEFEEAAFKL-KPGEMSG 289 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V+ FGY I V+ + + + VK+ I ++ K +++ L++ Sbjct: 290 VVETKFGYHIIKVTGKQEAAAEKLENVKETIVEFLKKQKEQQELSNFIDELKKK 343 >gi|253998626|ref|YP_003050689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. SIP3-4] gi|313200700|ref|YP_004039358.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. MP688] gi|253985305|gb|ACT50162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. SIP3-4] gi|312440016|gb|ADQ84122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp. MP688] Length = 267 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + KK +S+ ++AEYEK K++ E ++ + EA + L KG F + Sbjct: 104 LEDYLKKNPVSDAAVKAEYEKYKQEVGDKEY-NARHILVATEAEAKDIIAQLGKGADFAK 162 Query: 299 LAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ K LG F+ + ++++ + K + FG+ + + Sbjct: 163 LAKEKSKDPGGKENGGDLGWFAPGSMVKP-FSEAVTKMKKGSYTADPVQTQFGWHVIKLE 221 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +++ + + F++V+ + Q++ + + + + + + Sbjct: 222 DVRDAQPMPFEKVQDALKKQLQQRQLEKLLSDLRSKAK 259 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 2/125 (1%) Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGP 556 ++A ++ + K G +F + K N + V Sbjct: 142 ATEAEAKDIIAQLGK-GADFAKLAKEKSKDPGGKENGGDLGWFAPGSMVKPFSEAVTKMK 200 Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 P++ + V K+ + + +K L + + + L+ +++ L+S+ + Sbjct: 201 KGSYTADPVQTQFGWHVIKLEDVRDAQPMPFEKVQDALKKQLQQRQLEKLLSDLRSKAKI 260 Query: 617 TVHDN 621 + Sbjct: 261 VENPA 265 >gi|226324373|ref|ZP_03799891.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758] gi|225206821|gb|EEG89175.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758] Length = 245 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 83/193 (43%), Gaps = 12/193 (6%) Query: 212 VLTQWFEKYK----DNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 L ++ E+ K + ++A ++ + + + I IS++E++ +E NK ++ Sbjct: 52 ALAKYGEEEKLDETEKFKAILENARKDILAQMAIGKIFEGIIISDEEIREYFEANKARFA 111 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIP 321 + ++ ++ + ++ +S+ GK F +A+E S LG F K + Sbjct: 112 KGASVHAKHILVDSEDKCNKLLESIVSGGKAFEDVAKESSTCPSGANGGDLGEFGKGQMV 171 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D+ F+ A+ G + FGY + V + K + +VK+ I +++ K Sbjct: 172 K-EFEDAAFA-AEIGHVVGPVKTQFGYHLIKVEDKKEAEDAKLDDVKEQIKSEIMQKKQQ 229 Query: 382 EKVKEDYKRLEEF 394 E + L++ Sbjct: 230 EAYTAKVEALKKK 242 Score = 37.3 bits (85), Expect = 9.2, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 9/119 (7%) Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 LE ++ G + +++++ P G + + + E F Sbjct: 133 LESIVSGGKAFEDVAKESS----TCPSGANGGDLGEFGKGQMVKEFEDAAFAAEIGHVVG 188 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 Y +++++ A D KL++V +K + K E ++K L + Sbjct: 189 PVKTQF-----GYHLIKVEDKKEAEDAKLDDVKEQIKSEIMQKKQQEAYTAKVEALKKK 242 >gi|150389495|ref|YP_001319544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus metalliredigens QYMF] gi|149949357|gb|ABR47885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus metalliredigens QYMF] Length = 249 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 68/156 (43%), Gaps = 5/156 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++ + I I++ E+ Y +NK ++ P ++ ++++A LK+G F + Sbjct: 87 NKLLRDITITDSEITNYYTENKAQFEQPAQVQASHILVDSEEKAQGVLAELKEGLSFEEA 146 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + S LG F++ + ++ F++ + + + FGY I V + Sbjct: 147 ATKHSSCPSNAKGGDLGLFAQGQMV-PEFEEAAFNM-EVDTVSEPVKTQFGYHIIKVVDQ 204 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 KP+ S EVK + Q+ K + + + L+ Sbjct: 205 KPAQEKSLAEVKDQLNQQLLSQKQQKAYFDKIEALK 240 >gi|282880786|ref|ZP_06289482.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281305320|gb|EFA97384.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 713 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 101/734 (13%), Positives = 215/734 (29%), Gaps = 139/734 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IRK I + ++ + + + S S V V +KV F Sbjct: 4 LGKIRKR-----GMILISIIGLGLFAFIAEEGFRSCEASRNDQRQQVGKVLGEKVNVQDF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +I + G V N + + + + ++ + IGL + Sbjct: 59 QKLMDEYTEVIKMQQG-VDNLNEMQMNQVKDMVWQTYIQTKVVEDEAKKIGLTVTDAELQ 117 Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRLA----REGINEKEYIDH---------- 154 + ++P + + +F + +A ++ N + + Sbjct: 118 NILAEGTNPMLMQTPFVNRQTGRFDVNSLKKFIADYKTQQTANPQMAAQYQTLYKYWTFI 177 Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL-------------- 197 + + + G + + + + + E S+ Sbjct: 178 ERTLRQQILAQKYQSLLAGCILSNPVEAKLSYKEENEESSIQLATFAYSTIDDSKIKVQD 237 Query: 198 ---------------------NNRHVPAIADPSNA---VLTQWFEKYKDNYRA---PEYK 230 + ++V +PS A L Q F+KY + A P Sbjct: 238 ADLKAKYDELKERFKQNVESRDIKYVTVRVEPSPADRAELQQTFKKYTTDLAAASEPANV 297 Query: 231 R------ISYILFDVHEKEKKIEISND-------------ELQAEYEKN----KEKYFSP 267 ++Y+ V + +I++ E + + N K P Sbjct: 298 VRKSTSLVNYLGIPVAKTAYPNDIADKLDSMAVGQTYGPFETKMDNSMNVVKLISKQLLP 357 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 + Q+ QK AD + +L G F +A++ G+S + Sbjct: 358 DSVQYRQIQVMGKTPAEAQKRADSIYTALNAGAAFETIAKKYGQS---GEKVWMTTAQYQ 414 Query: 322 DVSLADS-----IFSLAKKG--DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + D+ I +L G + + G G +I V + + V I Sbjct: 415 NAPSLDADTKTYIGTLNNSGVNELKNIKLGQ-GNLIVQVVDRRAMINKYTAAV---IKKS 470 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + +K + + Y + F++ + + I + K + D + I Sbjct: 471 IDFSK--DTYSKAYNKFSSFVSANQTPESIQKNAKSSGYTVQ--DAKDITTSTHTLVGIN 526 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKT 492 + + +F + + + V + + P R + +V +K + Sbjct: 527 ATREAMKWLFDAKEGEISPMYECGNNDQLLLVVLDKIHPKGYRSYDDPQVKEFLKAEVLR 586 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYDG 548 K AE++ +KA + KN + GA + NQI Sbjct: 587 DKKAEQLMAKAKDV--------KNIAA-AQAKGAKVDAVNQITFAAPVFVMSVGASEPAL 637 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 V + P++ VF+VT + P + K T+ + + Sbjct: 638 SGAVAATAKGKFSSRPVKGNAGVYVFEVTGRTMRPGKFDAKTEEQKTRQKALQYAGNFMN 697 Query: 609 YLKSQYSVTVHDNL 622 L + ++ + L Sbjct: 698 ELILKANIEDNRYL 711 >gi|225621111|ref|YP_002722369.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1] gi|225215931|gb|ACN84665.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1] Length = 491 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 72/514 (14%), Positives = 171/514 (33%), Gaps = 79/514 (15%) Query: 8 ASRTWVAKIF--LV------VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56 ++ V K L +L + FL+ + T+ SV + + S + Sbjct: 10 KKKSPVIKTLQWLGVSAVSILLIIYFLVV----DTRGSQKTPTIGSVNGKPIYYTSTSPY 65 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ ++ Q++G +N+E ++ VS L+ + V Sbjct: 66 GRAFR-QIEGYYQQLGIQINNEM--YTYIEDLAFRRAVSTMLLNDVARK-NINVSDNFVV 121 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 + F + ++ + S + +EK K L + + S Sbjct: 122 EAMKS--QFIDTNGVYNQMAYESFIKNSSQSEKV---KIEKDLKEDILSQTVSAELFTS- 175 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 ++ + + ++K + I + Sbjct: 176 -----------------------------VKLNDLEMQREYKKNLT------KRDIEMVY 200 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + E + ++++ +L+ + NK + + + ++ + AD ++SLK Sbjct: 201 INASEIVQSNQVADADLEKYFTDNKTNFAQAD---ISWIITQSGGVADNLYKSLKADISL 257 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS---LAKKGDFTPVIHGSFGYVIAH 352 F + A E+ ++ LG ++ +P+ A+ IF+ K + I+ + Y I Sbjct: 258 FEKTAMEKSFDTNNYKLGYLTRMQMPNEDFANKIFANNNNTKGSNLLQPIYANGYYYIVL 317 Query: 353 VSNIKPSFTVSFQEV-KKDIANQMRITKASEKVK-EDYKRLEEFLALGTSMDEISRREKI 410 V++I+ + +V K+ + + + ++ E K+ E A +++ ++R Sbjct: 318 VNDIRIPE--KYTDVNKEVLRREYLNANMNTLLEAEKTKQAEVLKAAVANVNNLARLNGN 375 Query: 411 VSID----LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 I + + E A IP F + ++ V D + Sbjct: 376 GLIKYYKPAQPFSYNQGRLNTAEGAIIPDSTTESFYMHVFSMQTNQVSDVIKLDNGVAVI 435 Query: 467 Q-IKESIP--ARDRKLEEV-LTDVKKDWKTVKTA 496 + + E P A L+ VK++ + Sbjct: 436 RLVSEEKPNMATLTTLDAATKNAVKRELSMQRMN 469 >gi|254975855|ref|ZP_05272327.1| putative protein export chaperone [Clostridium difficile QCD-66c26] gi|255093242|ref|ZP_05322720.1| putative protein export chaperone [Clostridium difficile CIP 107932] gi|255307280|ref|ZP_05351451.1| putative protein export chaperone [Clostridium difficile ATCC 43255] gi|255314984|ref|ZP_05356567.1| putative protein export chaperone [Clostridium difficile QCD-76w55] gi|255517659|ref|ZP_05385335.1| putative protein export chaperone [Clostridium difficile QCD-97b34] gi|255650769|ref|ZP_05397671.1| putative protein export chaperone [Clostridium difficile QCD-37x79] gi|260683854|ref|YP_003215139.1| putative protein export chaperone [Clostridium difficile CD196] gi|260687514|ref|YP_003218648.1| putative protein export chaperone [Clostridium difficile R20291] gi|306520675|ref|ZP_07407022.1| putative protein export chaperone [Clostridium difficile QCD-32g58] gi|260210017|emb|CBA64063.1| putative protein export chaperone [Clostridium difficile CD196] gi|260213531|emb|CBE05267.1| putative protein export chaperone [Clostridium difficile R20291] Length = 380 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 46/235 (19%) Query: 196 VLNNRHVPAIADPSNAVLTQWF---------------EKYKDNYRAPEYK---RISYILF 237 +L++ +N L + E++ + E + L Sbjct: 141 ILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKKELV 200 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QK 281 +K ++++ E + Y KNK Y ++ +K Sbjct: 201 ASKYLNEKSKVTDKEAENYYNKNKSNYL---QVRASHILIKTVDDKGKQVSSSKKAELKK 257 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 EA+E + + G+ F LA++ + S LG F K + + S + F+L KKG+ Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKGEV 315 Query: 339 T-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ +GY I ++ K F+EVK D+ + + K + ++ ++ Sbjct: 316 SNKLVESDYGYHIIKKTDEK---YQPFEEVKSDLVSSLTSEKQNLLIQNLKEKYN 367 >gi|150019698|ref|YP_001311952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium beijerinckii NCIMB 8052] gi|149906163|gb|ABR36996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium beijerinckii NCIMB 8052] Length = 248 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 +++ + I+++E++ YE NKE + P + ++ ++EA++A + + G Sbjct: 80 ITSMAINKVLSDVTITDEEVKKYYEDNKEAFGQPATVSARHILVETEEEANKAREEILSG 139 Query: 294 K-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 K F A + S +LG FSK + ++ F+ ++ G T + FGY Sbjct: 140 KISFGDAAMKYSTCPSNQQGGNLGEFSKGMMV-PEFEEAAFT-SEIGKVTEPVKTQFGYH 197 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V + SF+EVK + + + +K + K LE Sbjct: 198 LVLVDAKNEASIKSFEEVKDSVLDNLIKENQHKKYDQILKELEAK 242 >gi|49477885|ref|YP_036943.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329441|gb|AAT60087.1| peptidylprolyl isomerase (protein export protein prsA) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 280 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNA--VLTQ 215 S ++V G + S+ + + +N S V VLN+++ + + L Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKATDEEVTKQIKELKT 83 Query: 216 WFEKYKDNYR------APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 + Y + + L EK K ++ E++ Y+ Sbjct: 84 KMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYK---------PK 134 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325 ++ ++K A E + L G+ F LA+ + G L F + Sbjct: 135 LQASHILVKDEKTAKEIKEKLNNGEDFAALAKRYSEDPGSKEKGGDLSEFGPGMMVK-EF 193 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + I SFGY I ++ K ++E K +I ++ + + Sbjct: 194 EDAAYKL-EVGQVSEPIKSSFGYHIIKLTGKKE--LKPYEEEKVNIRKELEQQRIQD 247 >gi|229115799|ref|ZP_04245201.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3] gi|228667682|gb|EEL23122.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3] Length = 293 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ T+ ++ KD + + + Sbjct: 65 YQMVLSKALLDKYKVSDEEATKQVKEAKDKMGDNFKETLEKLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFATLA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + S+GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKL-NAGQVSEPVKTSYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F+EVK I + + + + +++ L + + K Sbjct: 235 E--LKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEYKET 286 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 136 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFATLAKQYSEDTGSKEQGGEIAGFG 195 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + EEV Sbjct: 196 PGQTVKEFEEAAYKLNAGQVSEPVKTSY--------GYHIIKVTDKKE--LKPFEEVKDK 245 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 246 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 273 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 155 EKTAKEVKEKVNNGEDFATLAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P +E KDK L Q +D V+ L Sbjct: 215 VSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V+D Sbjct: 275 DIKVNDK 281 >gi|118477742|ref|YP_894893.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam] gi|118416967|gb|ABK85386.1| protein export protein [Bacillus thuringiensis str. Al Hakam] Length = 298 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 12/224 (5%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKIEI 248 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 70 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 129 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 EK+ + + PE++ V ++ ++K A E + + G+ F LA++ + Sbjct: 130 EKAITATVTEKDVKDNYKPEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTG 188 Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 G + P ++ + L G + + ++GY I V+N K F Sbjct: 189 SKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTNKKE--LKPFD 245 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 EVK I + + + + +++ L + + K Sbjct: 246 EVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 289 Score = 40.4 bits (93), Expect = 1.00, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 141 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 200 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + +EV Sbjct: 201 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTNKKE--LKPFDEVKDS 250 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 251 IRKDIEQQRLQDTTGKWKQQVVNELLKD 278 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 160 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 219 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVTN K + P E KD + Q +D V+ L Sbjct: 220 VSEPVKTTYGYHIIKVTNKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 279 Query: 615 SVTVHDN 621 + V+D Sbjct: 280 DIKVNDK 286 >gi|315187212|gb|EFU20969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta thermophila DSM 6578] Length = 501 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 80/493 (16%), Positives = 152/493 (30%), Gaps = 86/493 (17%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPF------SSFINSWKQELG 65 W + I ++ V F+ G+ A V + F ++ Sbjct: 21 WGSIIVFAIIVVSFIFVGVPSAGVGSQTKIVYGKYAGMPVEQLPQMPYTYFQREIERLSD 80 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 I Q+ + + + + +N V + +D GL + + R Sbjct: 81 QIRQQ-NVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDAGLHVSSKALDRAVMRE--- 136 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + +D +FS D +++ E +++ Y + + VV V G S Sbjct: 137 YTEDGEFSEDRYLATPPAERHQIRKF---YRETILSQQVVNDLVFGNVVSEAERSFIAEM 193 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + R + Y+V + P + E + D ++ E RI+ Sbjct: 194 NYPQRKIRYLVYDFDEYP------ETEAKAYGEAHPDLFKTMELSRIT------------ 235 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQLAEEQG 304 V +Q EA++ +Q+ LK+ ++F +LA Sbjct: 236 ------------------------------VTSSQIEAEKLYQTLLKEPERFEELARASS 265 Query: 305 KSLS---DISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357 + + +G + D+ D +IFS+ KKGD V G +VI Sbjct: 266 RDPNASQGGKMGVVRYADLKDLLSEDDLVTIFSM-KKGDILGVFTTLSGAWVIVRCDREA 324 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + ++ ++ I N + + V+E + L S++E + Sbjct: 325 EAPDLTRKDTLDYIKNYLLSYE-RNIVEEYFSTKASALRAAQSLEEFEAMARDQGKTPGS 383 Query: 418 VDFAGKDV--------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + + G + A Y E RVF D V L G Sbjct: 384 TGYFAINYGNLEIFPSPVANTDDGNILQAAVYSESFFERVFSTPVGGVTD-PVNLQGGLL 442 Query: 464 MWVQIKESIPARD 476 + E + D Sbjct: 443 VAFIEAEKTESED 455 >gi|126699880|ref|YP_001088777.1| putative protein export chaperone [Clostridium difficile 630] gi|255101406|ref|ZP_05330383.1| putative protein export chaperone [Clostridium difficile QCD-63q42] gi|115251317|emb|CAJ69148.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Clostridium difficile] Length = 380 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 46/235 (19%) Query: 196 VLNNRHVPAIADPSNAVLTQWF---------------EKYKDNYRAPEYK---RISYILF 237 +L++ +N L + E++ + E + L Sbjct: 141 ILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKKELV 200 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QK 281 +K ++++ E + Y KNK Y ++ +K Sbjct: 201 ASKYLNEKSKVTDKEAENYYNKNKSNYL---QVRASHILIKTVDDKGKQVSSSKKAELKK 257 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 EA+E + + G+ F LA++ + S LG F K + + S + F+L KKG+ Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKGEV 315 Query: 339 T-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ +GY I ++ K F+EVK D+ + + K + ++ ++ Sbjct: 316 SNKLVESDYGYHIIKKTDEK---YQPFEEVKSDLVSSLTSEKQNLLIQNLKEKYN 367 >gi|83309610|ref|YP_419874.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] gi|82944451|dbj|BAE49315.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] Length = 320 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 76/186 (40%), Gaps = 11/186 (5%) Query: 230 KRISYILFDVHEKEKKI--EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 KR+ L +KK+ ++++ ++ Y++ + + E ++ ++ A Sbjct: 137 KRVEIQLMAQALMQKKVRGAVTDEAVKVRYDQAVKNFQPQEEVHARHILAETEEGARSII 196 Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342 L +G F +LA+ + K LG F + + A + F++ + G+ + + Sbjct: 197 ADLNRGMDFAELAKTRSKDTGSGAMGGDLGYFVQGAMV-PEFAAAAFAM-RPGELSKTPV 254 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTS 400 FGY + V + + + + + K IA Q+ + V E ++ + GT Sbjct: 255 KTQFGYHVIKVEDKRMASIPPYDQAKPVIARQIAEELQEKMVVELREKAKIKRFKPDGTP 314 Query: 401 MDEISR 406 ++ + Sbjct: 315 LEAAKK 320 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 55/148 (37%), Gaps = 11/148 (7%) Query: 480 EEVLTDVKKDWKTVKTAEEVSSK---------ANQLVLEYSKEGKNFRDIGKNLGASLLT 530 E V + K + EEV ++ A ++ + ++ G +F ++ K + Sbjct: 160 EAVKVRYDQAVKNFQPQEEVHARHILAETEEGARSIIADLNR-GMDFAELAKTRSKDTGS 218 Query: 531 TNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 + + + F+ + P++ Y V KV + ++ + D+ Sbjct: 219 GAMGGDLGYFVQGAMVPEFAAAAFAMRPGELSKTPVKTQFGYHVIKVEDKRMASIPPYDQ 278 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + + ++L + ++ L+ + + Sbjct: 279 AKPVIARQIAEELQEKMVVELREKAKIK 306 >gi|213963094|ref|ZP_03391352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sputigena Capno] gi|213954178|gb|EEB65502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sputigena Capno] Length = 705 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 97/602 (16%), Positives = 205/602 (34%), Gaps = 72/602 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 LE IR S+T + + F+I + FS + + +V + V +F Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHMPNEIGTVNGEDVSIDAFRAQV 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + Q G V + E A+ + + V L+Q IE +GL + ++ +A Sbjct: 62 EN---ATRQANGQVSSIEAAKY------VWEQKVQEILLNQQIEKLGLSVEKDQILAILA 112 Query: 121 -----RSPLFHGKDNKFSHDVFVSRLAREGIN-EKEY------IDHYTKMLSRTDVVGMF 168 ++P F + F F S LA + Y D + + + Sbjct: 113 KTPLAQNPQFVNELGVFDPHKFTSYLATLKSTNPEAYAQWKIQEDAIVEGAKQQMYFSLI 172 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227 G+ +N + + ++Y+ L + ++ + + +K++ ++ Sbjct: 173 RAGLGVTNAEAEMEYHQEKDLADINYVALQYSSIDDKNITVTDGEIQDYIKKHEKQFKQE 232 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 Y+ I YI+ K +E L K PE +V+ ++ +++ Sbjct: 233 AYRNIQYIVAAEKPSAKDMEAEKQSL--------LKLLQPE------VVYNSKTNSNDTL 278 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 K K + + D +F + + AD++++L G Sbjct: 279 PGFAKTKNIKEFVDRNSNVPYD---STFVNKDNIRSAYADTLYALP-VGKVFGPYEEDGN 334 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYKRLEEFLALG 398 ++ + +P+ V I + ++A+ + + L + G Sbjct: 335 IKLSRMVAKEPAGAVK----ASHILIAYQGSQAATPNTTRTKEEAKAKAEELLAKAKTAG 390 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 T E++R G KG V F F +P+ V Sbjct: 391 TDFAELARENSEEPGAAYSGGDLGFFGKGAMVKP--------FEEFAFANPVGNIGLVET 442 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 D + V++ A + + V+ + T E+ SK + ++ S+ K F Sbjct: 443 -DFGFHVVKVTG--KAEAVNIATISRAVEP---SEATVSEIFSKVSNFEMKASQNPKEFA 496 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576 I K G S+L + +++ D++ G + +F+ ++ G + +V ++ Sbjct: 497 SIAKKFGLSVLRADNLHKNDDQIIGLGSNRAIVQWLFNKDTKVGDIKRFNAGSNNIVAQL 556 Query: 577 TN 578 Sbjct: 557 VK 558 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 106/336 (31%), Gaps = 32/336 (9%) Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +LA EE G + S LG F K + + F+ G+ ++ FG Sbjct: 389 AGTDFAELARENSEEPGAAYSGGDLGFFGKGAMVKP-FEEFAFA-NPVGNI-GLVETDFG 445 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA--SEKVKEDYKRLEEFLALGTSMDEIS 405 + + V+ + + I+ + ++A SE + + I+ Sbjct: 446 FHVVKVTGKAEAVNI------ATISRAVEPSEATVSEIFSKVSNFEMKASQNPKEFASIA 499 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 ++ + + + ++ + ++ +F KD + + + Sbjct: 500 KKFGLSVLRADNLHK-----NDDQIIGLGSNRAIVQWLFNKDTKVGDIKRFNAGSNNIVA 554 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 Q+ + +++ VK K A + KA +G + + I Sbjct: 555 -QLVKQGEEGLSSVQDAAPIVKPILIREKKAAILKEKA---------KGNSLQAIASANK 604 Query: 526 ASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 + + + + G + + F + YV+ ++ + Sbjct: 605 TEVKSATGLVMKNPTIIGEGREPKVVGAAFGLKQGQISKPIDGENAVYVIQLISETIAPA 664 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + + + + + +++ L++ ++ + Sbjct: 665 ITDYRTQAETVENLRTERAAQNILKSLENSATIKEN 700 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 7/120 (5%) Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIF 330 ++ +K A + KG +A + + I + + + F Sbjct: 577 ILIREKKAA--ILKEKAKGNSLQAIASANKTEVKSATGLVMKNPTIIGEGREPKVVGAAF 634 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 L K+G + I G + + + + ++ + + +R +A++ + + + Sbjct: 635 GL-KQGQISKPIDGENAVYVIQLISETIAPAITDYRTQAETVENLRTERAAQNILKSLEN 693 >gi|302873039|ref|YP_003841672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] gi|307688832|ref|ZP_07631278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] gi|302575896|gb|ADL49908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] Length = 247 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 5/163 (3%) Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 E K +EI++ ++ Y+ N+E + PE+ T ++ ++++A E ++ G Sbjct: 81 FPIAADEVTKDVEIADQDVADFYKNNRELFKKPELATASHILVDSEEKAQEIKAEIEAGL 140 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F A + S LG F K + + F+L + + FGY + Sbjct: 141 SFADAAAKYSTCPSNQRGGDLGQFQKGQMV-PEFEEVAFTLPIN-KLSDPVKTQFGYHLI 198 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V++ +P F EV+ I +M + K E L++ Sbjct: 199 KVTDFQPEMIQDFDEVQVAIKEKMLQDRRQYKFLEKVDELKKL 241 Score = 38.0 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 +E + ++ + G S + + + P G + ++ +P E++ F + Sbjct: 126 EEKAQEIKAEIEAGLSFADAAAKYS----TCPSNQRGGDLGQFQKGQMVPEFEEVAFTL- 180 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 P++K Y +++ + P + +EV +K+ + + K + Sbjct: 181 ----PINKLSDPVKTQFGYHLIKVTDFQPEMIQDFDEVQVAIKEKMLQDRRQYKFLEKVD 236 Query: 505 QL 506 +L Sbjct: 237 EL 238 >gi|30020980|ref|NP_832611.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579] gi|46396822|sp|Q81CB1|PRSA4_BACCR RecName: Full=Foldase protein prsA 4; Flags: Precursor gi|29896533|gb|AAP09812.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579] Length = 280 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 92/239 (38%), Gaps = 31/239 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 S ++V G + S+ + + +N S ++ + + ++ +T+ E+ Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLEE 80 Query: 220 YKD----NY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 KD N+ + + + L EK K ++ +++ Y+ Sbjct: 81 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 132 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---V 323 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 133 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 191 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 192 EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 247 >gi|16804258|ref|NP_465743.1| hypothetical protein lmo2219 [Listeria monocytogenes EGD-e] gi|224500981|ref|ZP_03669288.1| hypothetical protein LmonFR_00430 [Listeria monocytogenes FSL R2-561] gi|46396978|sp|Q8Y557|PRSA2_LISMO RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|16411689|emb|CAD00297.1| lmo2219 [Listeria monocytogenes EGD-e] Length = 293 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLTQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G+KF LA+E Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGEKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266 >gi|169824601|ref|YP_001692212.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328] gi|167831406|dbj|BAG08322.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328] Length = 250 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 F + + +S+DEL+ YE +K+ + T ++ ++ A E + + F Sbjct: 85 FAMANIINSVRVSDDELKEYYENHKDNFKVQPTFTASHILVESEDLAKEIKEKIDNDGDF 144 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 QLA+E S LG+F + + +++ + GD + FGY I ++ Sbjct: 145 AQLAKEYSTCPSKEQGGDLGTFQQGQMVK-EFENALIE-NEIGDIVGPVKTQFGYHIINI 202 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + SF+E K ++ + K + + RL+ Sbjct: 203 KDKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDRLQ 241 >gi|307942651|ref|ZP_07657999.1| cell-binding factor 2 [Roseibium sp. TrichSKD4] gi|307774290|gb|EFO33503.1| cell-binding factor 2 [Roseibium sp. TrichSKD4] Length = 286 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 6/156 (3%) Query: 237 FDVHEKEKKIE--ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 +KIE +S++++QA Y+K + E ++ + EAD L+ G Sbjct: 109 LRNAYIAQKIEGGVSDEDVQAAYDKQFADFEGDEEINARHILVKEKAEADAIVAELQGGA 168 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F++LA+E+ S LG F + + ++ F+L + FG+ + Sbjct: 169 DFVELAKEKSTGPSGPNGGDLGFFVRGQMVGP-FEEAAFALEPGAFTIEPVQTQFGWHVI 227 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + + + ++V + Q+ + ++ +++ Sbjct: 228 KLEEKRKKPKPTLEDVSAGLRQQLTRERYTKVMEDL 263 >gi|170740805|ref|YP_001769460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp. 4-46] gi|168195079|gb|ACA17026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp. 4-46] Length = 295 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 6/154 (3%) Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-- 300 E K ++ + + Y+ + E ++ N+ +A + +K G+ F ++A Sbjct: 118 EAKKAVTPEAARKLYDDTVKTLKPEEEVHARHILVDNEADAKKIAARIKGGEDFSKVAAE 177 Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++ G LG F+KE + + A++ F L + G + + FG+ + V + Sbjct: 178 TSKDPGSKAEGGDLGWFTKERMV-PAFAEAAFKLDQ-GKVSDPVRTQFGWHVIKVEEKRT 235 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F E+K+ I + + + + ++ + Sbjct: 236 KPVPGFDEMKEQIDTYLTRKTQQDIITKLREQAK 269 Score = 38.4 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 4/152 (2%) Query: 469 KESIPARDRKL--EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 K P RKL + V T ++ + + + + K G++F + Sbjct: 121 KAVTPEAARKLYDDTVKTLKPEEEVHARHILVDNEADAKKIAARIKGGEDFSKVAAETSK 180 Query: 527 SLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 + + + + F V P+ + V KV + PV Sbjct: 181 DPGSKAEGGDLGWFTKERMVPAFAEAAFKLDQGKV-SDPVRTQFGWHVIKVEEKRTKPVP 239 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 D+ + + + +I L+ Q + Sbjct: 240 GFDEMKEQIDTYLTRKTQQDIITKLREQAKIE 271 >gi|126724635|ref|ZP_01740478.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium HTCC2150] gi|126705799|gb|EBA04889.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium HTCC2150] Length = 341 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 8/165 (4%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + L ++ + + Y++ ++ + EA Sbjct: 156 EVRALKAGLLLDQISAD--AVTEEAVTKIYDERFAGQTGGVEWNASHILVDTEDEAKALI 213 Query: 288 QSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +L +G F +LA+E+ S LG F + + + + GD + + Sbjct: 214 VTLAEGADFAELAKEKSTGPSGPRGGQLGWFGPGQMV-PEFEGAAAEM-ETGDVSAPVQT 271 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 FG+ + +++I+ + + +EV+ +I ++ A + E + Sbjct: 272 QFGWHVLKMNDIRETPAPTLEEVRAEIVAEI-QGLAVDSAIEAAE 315 >gi|325285709|ref|YP_004261499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica DSM 7489] gi|324321163|gb|ADY28628.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica DSM 7489] Length = 700 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 92/600 (15%), Positives = 200/600 (33%), Gaps = 75/600 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 LE IRK RT V + + + F+I G+ +D + V +TV + + + F Sbjct: 4 LENIRK--RTTVLILIIGLALFAFVISGIFSADGMSGVKTGTTVAEINGKDISIDKF--- 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++E+ S + G S + + + D V A L +D+G+ + ++ I Sbjct: 59 -RREVEAASNRFGAGATS-----MQVVNSVWDQEVKNAILSDEFDDLGISIEQDQIINFI 112 Query: 120 ARSPLF------HGKDNKFSHDVFVSRLAREGI-NEKEY------IDHYTKMLSRTDVVG 166 A +P F ++ F +F ++ N +Y + Sbjct: 113 ASNPGFSQNPQYQNENGVFDEYIFKEFISTLKTENPAQYALWLQQEQAIMQAAKEQTYFN 172 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225 + G+ + + + + + Y+ + + S + + + ++++++ Sbjct: 173 LVKAGLGATLKEGELDYKLANDKIDIKYVRVPYTSIADSSVAVSKDEIAAYIKDHEEDFK 232 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 + + ++ F+ + + ++ + E + L F N K +E Sbjct: 233 QEKARDFQFVYFEEKPSLEDEKAVEAKVVSLLNDKVEYNDT-------ILGFRNTKNIEE 285 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 ++ L ++ + + + AD++ +L GD Sbjct: 286 FL--------------DRNSDLKYDTI--YKTKNVLSPKFADTLMAL-NIGDIYGPYRDG 328 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSM 401 + + + + K V + + +A+ +VK E KR EE L Sbjct: 329 NYFKVTKMMDKKKDGNV---KASHILVAWEGAERANPEVKRTKEEAKKRAEELLKDAKKG 385 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 D + D P G ++ P ++ +F + + Sbjct: 386 DVEFSVLARDNSDGPSASRGGDLGYSQQGRMTPKFDEFMFSNNVGTIGMVETEF------ 439 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 + V+I + L V T + + T + ++A Q + K F ++ Sbjct: 440 GFHIVKIDDKQD-----LVRVATLARAIEASEATINSLFTEATQFESDAKDSDKTFLELS 494 Query: 522 KNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGP--VEMVKCFPIENGLSYVVFKVT 577 K N+I MD + F+ V +K FP+ NG Y V ++T Sbjct: 495 KEKKYVARPVNKIKAMDENLPGLAAQRAIVQWAFNDDSEVGDIKRFPVNNG--YAVVQLT 552 >gi|313632264|gb|EFR99323.1| foldase protein PrsA [Listeria seeligeri FSL N1-067] Length = 295 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 31/242 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIE 247 + ++ + F+KYK Y E + + Y + E + Sbjct: 62 LGDKYKVTDEQVDSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNMLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G+KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + P+ +F Sbjct: 176 ATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMDE--PATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + KK + Q+ + +K++YK + + + + + D Sbjct: 234 DKDKKAVKESYLQSQLTTENMQKTLKKEYKDANVKVED-KDLKDAFKDYDGSAKTEESTD 292 Query: 420 FA 421 Sbjct: 293 ST 294 >gi|229096816|ref|ZP_04227786.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29] gi|228686658|gb|EEL40566.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29] Length = 293 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ T+ ++ KD + + + Sbjct: 65 YQMVLSKALLDKYKVSDEEATKQVKEAKDKMGDNFKETLEKLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + S+GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKL-NAGQVSEPVKTSYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F+EVK I + + + + +++ L + + K Sbjct: 235 E--LKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEYKET 286 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 136 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFG 195 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + EEV Sbjct: 196 PGQTVKEFEEAAYKLNAGQVSEPVKTSY--------GYHIIKVTDKKE--LKPFEEVKDK 245 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 246 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 273 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 155 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P +E KDK L Q +D V+ L Sbjct: 215 VSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V+D Sbjct: 275 DIKVNDK 281 >gi|254520547|ref|ZP_05132603.1| ppic-type ppiase domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226914296|gb|EEH99497.1| ppic-type ppiase domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 248 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 8/181 (4%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E+YK+N R E ++ +++ ++ +++++ Y NK ++ + + ++ Sbjct: 66 EEYKENVRQAENDILT--QLTLNKLLLEVTVTDEDALNYYNNNKGEFTQQPTVSAKHILV 123 Query: 278 PNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLA 333 +++ D+ + + F + A + S +LG+F + + D F L Sbjct: 124 DSKELCDKIKSEIDSKELTFEEAAMKYSTCPSKEEGGNLGAFGRGMMV-PEFEDEAFKLD 182 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + FGY + V + + F+E+K I N++ K + K LE+ Sbjct: 183 IN-VVSEPVKTQFGYHLIKVEDKNEGREMPFEEIKAQIVNKLLQEMQQRKYLDVVKELEK 241 Query: 394 F 394 Sbjct: 242 K 242 >gi|94971251|ref|YP_593299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] gi|94553301|gb|ABF43225.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Koribacter versatilis Ellin345] Length = 369 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 60/386 (15%), Positives = 130/386 (33%), Gaps = 82/386 (21%) Query: 20 VLFVPFLIWGLSDALFSVSGSST---VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 +L FL+ L+ +F+ + + V Q + + +Q L + Q+ + Sbjct: 14 ILVSSFLVAALAVPMFAGDDTVVEEIIARVNNQIITRADLRRESEQVLDQLKQQDAATAD 73 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--EIARSPLFHGKDNKFSH 134 + + K +L +L+ L D+G+ AD + E+ + D+ + Sbjct: 74 QKFVQRQ---KDVLRDLIDQQLLVDKGADLGISADAELIKRLDEMRKQMNLASMDDLENE 130 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 ++G++ +++ + + V+ Sbjct: 131 AK------KQGVSFEDFKQNMKNQIITQRVISQ--------------------------- 157 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 V + + ++++ +K PE R+S IL V ++ Sbjct: 158 ------EVGSHIQITKDEEQKFYDAHKSEMERPEQVRLSEILVPVDAEKDPNA------- 204 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDI 310 Q++A+ LK GKKF +A+ + Sbjct: 205 ----------------------TAAQQKAEGIIAELKAGKKFDDVAKAESAGPTAKEQGG 242 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + + L D++F L K+G++T I G+VI V+ + S Q+++ Sbjct: 243 DLGYFKRGVLAKQ-LEDTVFPL-KEGEYTEPIRTKQGFVIIKVTEHQQSGVPPLQQIEPK 300 Query: 371 IANQMRITKASEKVKEDYKRLEEFLA 396 + + + K ++ +L E Sbjct: 301 LQEAVYMEKLEPTLRTYLTKLREEAY 326 Score = 37.3 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 12/264 (4%) Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 K + + + +K + + L +DE+ ++ + S+D + + V Sbjct: 81 KDVLRDLIDQQLLVDKGADLGISADAELI--KRLDEMRKQMNLASMDDLENEAKKQGVSF 138 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 ++ + + RV ++ T Y + + P + R L E+L V Sbjct: 139 EDFKQNMKNQIITQRVISQEVGSHIQITKDEEQKFYDAHKSEMERPEQVR-LSEILVPVD 197 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFFGY 546 + A KA ++ E K GK F D+ K A Q + + Sbjct: 198 AE--KDPNATAAQQKAEGIIAEL-KAGKKFDDVAKAESAGPTAKEQGGDLGYFKRGVLAK 254 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQE-KDKFISYLTQMMNKDL 602 VF PI +V+ KVT S V P+Q+ + K + + Sbjct: 255 QLEDTVFPLKEGEY-TEPIRTKQGFVIIKVTEHQQSGVPPLQQIEPKLQEAVYMEKLEPT 313 Query: 603 LDSVIAYLKSQYSVTVHDNLIQRY 626 L + + L+ + + V I Sbjct: 314 LRTYLTKLREEAYIDVKPGYIDTA 337 >gi|302380403|ref|ZP_07268872.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3] gi|303235180|ref|ZP_07321799.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4] gi|302311807|gb|EFK93819.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3] gi|302493667|gb|EFL53454.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4] Length = 250 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 F + + +S+DEL+ YE +K+ + T ++ ++ A E + + F Sbjct: 85 FAMANIINSVRVSDDELKEYYESHKDNFKVQPTFTASHILVESEDLAKEIKEKIDNDGDF 144 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 QLA+E S LG+F + + +++ + GD + FGY I ++ Sbjct: 145 AQLAKEYSTCPSKEQGGDLGTFQQGQMVK-EFENALIE-NEIGDIVGPVKTQFGYHIINI 202 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + SF+E K ++ + K + + RL+ Sbjct: 203 KDKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDRLQ 241 >gi|255524040|ref|ZP_05391002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium carboxidivorans P7] gi|296186897|ref|ZP_06855298.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7] gi|255512327|gb|EET88605.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium carboxidivorans P7] gi|296048611|gb|EFG88044.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7] Length = 341 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 51/391 (13%), Positives = 110/391 (28%), Gaps = 81/391 (20%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWKQE--LGM 66 V K+ VL F + + + + +S V +V +K+ ++ + Sbjct: 4 VKKLVSAVLISAFAFSTVGCNMIAKTPEAIKNSVVATVNGEKITRGELDSNPNLMGVVAQ 63 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126 I Q+ G L ++ +V Sbjct: 64 IKQQYGEDYEKNDDAKSILKEQ-----------------------KAQVLDT-------- 92 Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186 + E + I+ K L + + + Q Sbjct: 93 -------------------MIEAKVIEQKAKELK------VLPDDAKLKAEVDKQISNIK 127 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQ-WFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + D + + L ++ + K+ + + K Sbjct: 128 QQQFGNDATKFQAA--LKQQNLTEETLKNMYYTQMKNQ---------ETVTNVTNNVGKD 176 Query: 246 IEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 +++ + +Q Y+ N K+ P+ ++ + EA + L KG+ F ++A+E Sbjct: 177 VKVDDKSIQDYYKNNPYKFTEKPDRIHTAHILVKTEDEAKKVKARLDKGEDFAKVAKEVS 236 Query: 305 KSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + G + D + +L KKG + + FGY I + Sbjct: 237 TDTATKDKGGDLGFVNYVDSGFDAAFMAGAIAL-KKGAVSAPVKSQFGYHIIKCIEKEEY 295 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 VK I Q+ + +K ++ Sbjct: 296 PVKKIDAVKAQIKTQLETEQKQKKYQDKVAE 326 >gi|291165957|gb|EFE28004.1| PPIC-type PPIASE domain protein [Filifactor alocis ATCC 35896] Length = 247 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 5/160 (3%) Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 I F V++ + I+++E +A YE++K + ++ N+ A E + + KG Sbjct: 80 IQFGVNKIVEVEPITDEEKRAFYEEHKNVFVQSGEVEASHILVDNEALAREIYIKIDKGI 139 Query: 295 KFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LAE+ S SLG F + + F+L + + + + FGY + Sbjct: 140 PFEELAEKHSSCPSKSSGGSLGKFGRGQMV-PEFESVAFALEEN-EVSVPVKTQFGYHVI 197 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 V P ++F ++ +I + K E+ + + L Sbjct: 198 RVDKKYPQQQIAFDLIEPEIEATLLEKKQHEQYVKTIEEL 237 >gi|86130561|ref|ZP_01049161.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134] gi|85819236|gb|EAQ40395.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134] Length = 643 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 99/679 (14%), Positives = 196/679 (28%), Gaps = 115/679 (16%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + V F + S+ ++ V +V + F+ +++ L +I+ Sbjct: 4 LFIVCFFM-----PFVSLGQQEVLLKVNNDEVTTADFVRVYEKNLALIND---------- 48 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 ++ LD + Q GL + EIA + + K Sbjct: 49 -TEENSPEQYLDLFIDYKLKVQEAYRKGLH-NKASYKKEIAS---YRTQLGK-------D 96 Query: 140 RLAREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 L + +K + Y L ++ P + L K R V Sbjct: 97 YLNDVQVTDKLVEEAYNRTKNELRARHILVRVRPDALPKDTLAAFNKLLEARKRIVAGED 156 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DEL 253 DPS + + ++ Y + K E+S Sbjct: 157 FAFIASKYSEDPSAKQ-------NGGDLGWFKAFKMVYPFENAAYTTKVNEVSQPFRTSF 209 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQG 304 + + V ++ +++ E L KG F LA Sbjct: 210 GYHIVQPTASRIAQGSVQVAHIMIALKQKDSSIIAEEKIKEVRALLAKGAAFETLALNYS 269 Query: 305 KSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + G F K + ++ F L K GD + FG+ I + P Sbjct: 270 DDKNSAKKGGVLSAFEKGQLSSSKFENTAFDLKKVGDISEPFKTKFGWHILKLIKKNP-- 327 Query: 361 TVSFQEVKKDIANQMRIT-KASEKVKEDYKRLEEFL---------ALGTSMDEISRREKI 410 +SF+++K + ++ +A +E RL E + TS+ EK+ Sbjct: 328 VLSFEKMKPSLTKRVTKDSRARVLSQELNTRLREQYKITQEPEITSYFTSVLPEVYEEKL 387 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR-----VFGKDDPLSKDHTVALPDGSYMW 465 G +V Q+L + + D K + + + Sbjct: 388 NVFTDDSALSKEAFKVGDQVITYKDIAQVLEKKYRKVPYVSRDYFVKREVENFVNNALIT 447 Query: 466 VQ--------------IKESIPARDRKLEEVLTDV------------------KKDWKTV 493 I E + + T++ + +K + Sbjct: 448 YHKSHLEEQDSDFGLLINEYK-EGLLLFDLLKTEIWDKAQKDSVGLNTFYVNNIERYKAL 506 Query: 494 KT-----AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548 +T K L+ + +G+N + L + I D + G Sbjct: 507 QTFTTRVFTTSQKKIASTYLKRNTQGENSNSVLSVLKKKHDSPIIITLKDFVKEDLPMSG 566 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 I ++ G E++K G +YVV++V + + K L D + Sbjct: 567 IVKI--GDKELLK-----EGGNYVVYEVVSINEAMTNTLQNVRGQVMSDYQKFLEDIFVN 619 Query: 609 YLKSQYSVTVHDNLIQRYL 627 L+ ++TV+ ++ + + Sbjct: 620 RLREDSNITVNKTVLNKLI 638 >gi|114331215|ref|YP_747437.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] gi|114308229|gb|ABI59472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] Length = 424 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 58/416 (13%), Positives = 136/416 (32%), Gaps = 63/416 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + ++ N + L+K++L+ L+ Sbjct: 21 DRIVAVVNEEVITQQETNELLQNTIQQLQKQ-----NIQLPSMEVLEKQLLERLIIKRIQ 75 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +++GL + + R +DN + D F L +EG N + D + Sbjct: 76 LQRAKEVGLSVSDNDLDQTLRRI----VQDNHLTMDEFRQVLLQEGTNLSLFRDEIRDEI 131 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKR-----------------FYFENRSVDYIVLNNRH 201 + + + + + +D + +D +N RH Sbjct: 132 LMSRLKEQEINSRVNVTESEIDNFLENQANSPAANEEYRIAHILVQTSEQMDEAQINTRH 191 Query: 202 VPAIADPSN-------AVLTQWFEKYKDNYRAPE-------YKRISYILFDVHEKEKKIE 247 A A + A ++ + D + E + + + +I Sbjct: 192 KRAEAAYEDLRQGISFAQVSAEYSDATDAMQGGELGWRPLGQIGSPFAELLLQMQPGEIT 251 Query: 248 -ISNDELQAEYEKNKEKYFSP------EIRTVEQLVFP-----NQKEA----DEAFQSLK 291 + + K E+ E + ++ ++++A D+ + + Sbjct: 252 PVVRSPIGFHILKLLERRQQEKSVTIIEQTHAQHILIKVSEIISEEDAHQLIDQIMERIH 311 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F+++A+ + S LG S ++ +L G + + SFG+ Sbjct: 312 NGADFMEMAKAHSEDASASAGGDLGWVSPGDTV-PEFEQAMNALL-PGQISQPVRTSFGW 369 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 + V + S VS Q+ ++ + KA +E ++L + + ++ I Sbjct: 370 HLIKVIERR-SQDVSEQKQRETARKTIHARKADAVTQEWLQQLRDQAYVEYKVEGI 424 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 33/270 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ++ R + G+ S+ LDQ R R V L + L + Sbjct: 68 RLIIKRIQLQRAKEVGLSVSDNDLDQTLR-----RIVQDNHLTMDEFRQVL------LQE 116 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +R I E ++ ++ E+ E + E + + Sbjct: 117 --GTNLSLFRDEIRDEILMSRLKEQEINSRVNVTESEIDNFLENQANSPAANEEYRIAHI 174 Query: 276 VFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYI 320 + K A+ A++ L++G F Q++ E + LG I Sbjct: 175 LVQTSEQMDEAQINTRHKRAEAAYEDLRQGISFAQVSAEYSDATDAMQGGELGWRPLGQI 234 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKD-IANQMRI 377 A+ + + + G+ TPV+ G+ I + + ++ I ++ Sbjct: 235 GSP-FAELLLQM-QPGEITPVVRSPIGFHILKLLERRQQEKSVTIIEQTHAQHILIKVSE 292 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + E + ++ E + G E+++ Sbjct: 293 IISEEDAHQLIDQIMERIHNGADFMEMAKA 322 >gi|312792832|ref|YP_004025755.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179972|gb|ADQ40142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 339 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 56/388 (14%), Positives = 124/388 (31%), Gaps = 88/388 (22%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--IS 68 + A + L++L + + V + V V +K+ F +++ ++ + Sbjct: 11 SIAAVVLLIILIAV-----TPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQINYYGLD 65 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 + ++ + + +LD L+ Q + + K Sbjct: 66 KAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIE--QYK 123 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 + S F L G E EY D ++ +V Sbjct: 124 SDSQSGAEFKQYLQTIGATENEYKDQV----IKSQIVSKLY------------------- 160 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 V S+A + ++ +K ++ + S+ILF V++ Sbjct: 161 -----------DEVTKNQKASDAEIESYYNSHKSDFVE---VKASHILFKVND------- 199 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306 + +K+A+E Q +K G+ F +LA++ + Sbjct: 200 ------------------------SKEEAAKKKKAEEILQMIKVGQNFEKLAQKYSEDET 235 Query: 307 --LSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 +G K I +++FSL G+ + ++ + G+ I V++ K Sbjct: 236 TKQKGGDMGYLRKNIIIQYYGNEFGNAVFSLG-IGEISNIVQTNDGFHIIKVTDRK---Q 291 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389 + +VK +I + + K E + + Sbjct: 292 LLLSDVKDEIKSTIESQKKDEYYQSLLE 319 >gi|293375521|ref|ZP_06621798.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sanguinis PC909] gi|325840213|ref|ZP_08166980.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sp. HGF1] gi|292645861|gb|EFF63894.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sanguinis PC909] gi|325490361|gb|EGC92686.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sp. HGF1] Length = 239 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 8/162 (4%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 + + K I +++ E +A Y +N++++ E ++ + +A++ + +G Sbjct: 75 IFQHSIGQMFKTINVTDAECEAYYNENQDQF-KEETVRAAHILVDEEAKAEDLLNQINEG 133 Query: 294 KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F QLA E S LG F + + + F+L G+ + V+ FGY + Sbjct: 134 ADFHQLASEHSSCPSGARGGDLGDFGRGQMV-PEFEQAAFAL-NIGEISGVVKSQFGYHL 191 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + K TV F +V I + K +E + L+ Sbjct: 192 IKLLDKKE--TVPFTDVLPQIKQYLVTKKQNEMYSAFTQGLK 231 >gi|301054383|ref|YP_003792594.1| peptidylprolyl isomerase [Bacillus anthracis CI] gi|300376552|gb|ADK05456.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI] Length = 280 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNA--VLTQ 215 S ++V G + S+ + + +N S V VLN+++ + + L Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLNDKYKATDEEVTKQIKELKT 83 Query: 216 WFEKYKDNYR------APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 + Y + + L EK K ++ E++ Y+ Sbjct: 84 KMGNNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYK---------PK 134 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSL 325 ++ ++K A E + L G+ F LA++ + L F + Sbjct: 135 LQASHILVKDEKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGDLSEFGPGMMVK-EF 193 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + I SFGY I ++ K ++E K +I ++ + + Sbjct: 194 EDAAYKL-EVGQVSEPIQSSFGYHIIKLTGKKE--LKPYEEEKVNIRKELEQQRIQD 247 >gi|242309441|ref|ZP_04808596.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489] gi|239524012|gb|EEQ63878.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489] Length = 272 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----- 293 + ++ +K+ +S+ E++ Y NK K+ PE+ V ++ ++ EA +K+ Sbjct: 102 MRQEMEKVRVSDSEIEKFYNDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNSL 161 Query: 294 KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 KF +LA+ + K + +G ++ + AD+ F L K + FGY + Sbjct: 162 AKFEELAKSKSKDGSAQNGGDVGWIARGQVV-PEFADAAFKLNKGQYTQTPVKTQFGYHV 220 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +V + KP+ T++ ++VK I +R+ K E VK++ + L + Sbjct: 221 IYVEDKKPTTTLALKDVKGQIEQNLRLMKFQENVKKEGQELRKK 264 >gi|319404585|emb|CBI78191.1| peptidyl-prolyl cis-trans isomerase [Bartonella rochalimae ATCC BAA-1498] Length = 308 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 62/149 (41%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I++ +++A Y+K + ++ ++EA++ + L KG+ F ++A++ Sbjct: 128 KIADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEKVIKRLNKGESFEEIAKKDSTD 187 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG FS+ + ++ F+L + FG+ + + + + Sbjct: 188 GSSAVGGDLGYFSRGQMVKP-FEEAAFNLKVGEYTKKPVESPFGWHVIKIEDRRLKQPPV 246 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK + Q+ + + ++ Sbjct: 247 FDDVKDVLRTQLIREHYQTLITDLRGKIN 275 >gi|91974780|ref|YP_567439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] gi|91681236|gb|ABE37538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB5] Length = 305 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 5/168 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E+ R ++ D+ E K +ND ++ YE ++ + ++ ++ +A Sbjct: 110 EFARNRLLMDDLLAVEGKNATTNDAMKKVYEDAAKQISGEQEVHARHILVESEDDAKAVA 169 Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + LKKG F +LA+++ K LG F+KE + + F++ + G + + Sbjct: 170 EELKKGADFAELAKKKSKDPGASDGGDLGFFTKEQMV-PEFSAVAFAM-EPGKISDPVKS 227 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I V + +F +VK I + ++ V + + + Sbjct: 228 QFGWHIIKVEEKRSRKPPTFDQVKPQIEQYVTRKAQADYVAQLRQAAK 275 Score = 40.4 bits (93), Expect = 1.00, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 41/118 (34%), Gaps = 1/118 (0%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 S + V E K+G +F ++ K ++ + + + + F+ Sbjct: 161 SEDDAKAVAEELKKGADFAELAKKKSKDPGASDGGDLGFFTKEQMVPEFSAVAFAMEPGK 220 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+++ + + KV + D+ + Q + + +A L+ V Sbjct: 221 I-SDPVKSQFGWHIIKVEEKRSRKPPTFDQVKPQIEQYVTRKAQADYVAQLRQAAKVE 277 >gi|326318802|ref|YP_004236474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375638|gb|ADX47907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 299 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 10/171 (5%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF 287 +Y+ + ++ + Y+ E++ PE V ++ ++ + ++ Sbjct: 106 AYLAKVDKDNMPSDAVAEGLARNIYKAKPERFKVPEQVQVRHILIAGTGADSRAQIEKIE 165 Query: 288 QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 Q LK G F QLA+E +G + LG F + + F+L K G + ++ Sbjct: 166 QELKGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMV-PEFDKAAFALTKPGQLSGIVE 224 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FGY I + + T SF EV+ ++ ++R E D + L++ Sbjct: 225 SKFGYHILQLEGRHAARTRSFDEVRSELMQEVRANVQQEARVADAQALQQE 275 Score = 45.8 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 7/149 (4%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++E+ L G ++++ G GK V + F Sbjct: 158 RAQIEKIEQELKGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMV------PEFDKAAF 211 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 P V G Y +Q++ AR R +EV +++ ++ + E + A Sbjct: 212 ALTKPGQLSGIVESKFG-YHILQLEGRHAARTRSFDEVRSELMQEVRANVQQEARVADAQ 270 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 L E + + T Sbjct: 271 ALQQEAKINKEAIEAFAAGYNPQPVKTAP 299 >gi|222823915|ref|YP_002575489.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari RM2100] gi|222539137|gb|ACM64238.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari RM2100] Length = 271 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 27/245 (11%) Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKY 220 + + G + ++L +Q K + ++ + + DPS L Sbjct: 36 NEFFAPMLRGAKITDLPAEQKKAIIDQYIVQQLVLKDAKAQKIENDPSYKEELE------ 89 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 RA E ++ + I+ + + + YE NK+K+ P + ++ ++ Sbjct: 90 ----RAKEAILVNIYQ---KKIFDSIKNDDAKAKKFYEANKDKFTKPAQVKAKHILVTSE 142 Query: 281 KEADEAFQSLKK------GKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIF 330 KEA + L K KF QLA+E+ G S LG F++ + AD+ F Sbjct: 143 KEAKDIIAELSKLSGKALNDKFAQLAKEKSIDKGSSAQGGDLGWFAESTMVKP-FADAAF 201 Query: 331 SLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 S+ KKG + + FGY I + + T+S+ EVK I + +++ + E + + + Sbjct: 202 SM-KKGTISKTPVKSDFGYHIILKEDARAKSTMSYNEVKAGIESNIKMEEFKELMNKKAQ 260 Query: 390 RLEEF 394 L + Sbjct: 261 ELLQK 265 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 4/167 (2%) Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I + F E KD + KA + K ++ +A + + + +K Sbjct: 104 IFDSIKNDDAKAKKFYEANKDKFTKPAQVKAKHILVTSEKEAKDIIAELSKLSGKALNDK 163 Query: 410 IVSIDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + G +G ++ A + F V G ++ + Sbjct: 164 FAQLAKEKSIDKGSSAQGGDLGWFAESTMVKPFADAAFSMKKGTISKTPVKSDFGYHIIL 223 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + +++ EV ++ + K + E ++ KA +L+ + E Sbjct: 224 K-EDARAKSTMSYNEVKAGIESNIKMEEFKELMNKKAQELLQKAKVE 269 >gi|47097568|ref|ZP_00235100.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|224498964|ref|ZP_03667313.1| hypothetical protein LmonF1_04383 [Listeria monocytogenes Finland 1988] gi|254826892|ref|ZP_05231579.1| export protein [Listeria monocytogenes FSL N3-165] gi|254831344|ref|ZP_05235999.1| hypothetical protein Lmon1_08297 [Listeria monocytogenes 10403S] gi|254899079|ref|ZP_05259003.1| hypothetical protein LmonJ_04684 [Listeria monocytogenes J0161] gi|254912780|ref|ZP_05262792.1| protein export protein [Listeria monocytogenes J2818] gi|254937107|ref|ZP_05268804.1| export protein [Listeria monocytogenes F6900] gi|255025820|ref|ZP_05297806.1| hypothetical protein LmonocytFSL_04835 [Listeria monocytogenes FSL J2-003] gi|284802666|ref|YP_003414531.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578] gi|284995808|ref|YP_003417576.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923] gi|47014054|gb|EAL05055.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|258599272|gb|EEW12597.1| export protein [Listeria monocytogenes FSL N3-165] gi|258609709|gb|EEW22317.1| export protein [Listeria monocytogenes F6900] gi|284058228|gb|ADB69169.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578] gi|284061275|gb|ADB72214.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923] gi|293590774|gb|EFF99108.1| protein export protein [Listeria monocytogenes J2818] Length = 293 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G+KF LA+E Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGEKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266 >gi|118581988|ref|YP_903238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] gi|118504698|gb|ABL01181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter propionicus DSM 2379] Length = 321 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 18/191 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 D Y++ +++ + E +I++ E++A Y +N Y E + F + Sbjct: 123 DQYKSQLREQLERLRLVSMEVRSRIQVGESEVRAYYNENLATYSEDETFRARHIFFKTNE 182 Query: 282 EADE------------AFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSL 325 +A K GK F +LA + LGSF K + L Sbjct: 183 KAPAEEIKRTMNTALMVLAEAKSGKDFAELARTYSEDPAAKKDGGDLGSFKKGDM-QPEL 241 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 +I + K+G+ + +++ G+ + + P + VK +I + K+ E+ K Sbjct: 242 EQAILGM-KQGEVSELVYTPLGFHLIKLEARTPGTPKPLESVKSEIEETIYRKKSEERFK 300 Query: 386 EDYKRLEEFLA 396 + + + Sbjct: 301 KWATEMRAKAS 311 >gi|296503398|ref|YP_003665098.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] gi|296324450|gb|ADH07378.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] Length = 268 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 90/239 (37%), Gaps = 31/239 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215 S ++V G + S+ + + +N S ++ + + ++ L + Sbjct: 12 SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 68 Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 69 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 120 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---V 323 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 121 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 179 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 180 EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 235 >gi|218234193|ref|YP_002367583.1| peptidylprolyl isomerase [Bacillus cereus B4264] gi|218162150|gb|ACK62142.1| foldase protein PrsA [Bacillus cereus B4264] Length = 280 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 100/273 (36%), Gaps = 33/273 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV----LTQ 215 S ++V G + S+ + + +N S ++ + + ++ L + Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLS---EMVVEKVLHDKYKVTDEEVTKQLKE 80 Query: 216 WFEKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 +K DN+ + + + L EK K ++ +++ Y+ Sbjct: 81 LKDKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYK-------- 132 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---V 323 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 133 -PKLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVK 191 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 D+ + L + G + + SFGY I + + K ++E K++I ++ + + Sbjct: 192 EFEDAAYKL-EVGQLSEPVKSSFGYHIIKLMDKKE--LKPYEEEKENIRKELEQQRIQD- 247 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + ++++ L + + K +L Sbjct: 248 -PQFHQQVTRELLKNADIKVSDKDLKDTFKELE 279 >gi|269792688|ref|YP_003317592.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100323|gb|ACZ19310.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 340 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 126/395 (31%), Gaps = 89/395 (22%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59 M++ +R + + + +V + F +G+ SG V + +K+ S Sbjct: 2 MMQYLRNNVKGIMIGVVVVFIVSCFAGYGMYVRGRGSSGGDYPVAKLDGKKIMRSQVEMR 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ ++++ G V S + + ILD++V G L + + G++ V + Sbjct: 62 LRE----VAEQFGDRVTS--GDVPMIRRMILDDIVVGMELTKAAKAEGIKVAKEEVDQYL 115 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A + + L R G+ E+E + ++ ++ Sbjct: 116 ASMQA-QFPT----KEAYDEYLKRSGMTERELRRKVEENIAVGKLMEKVTAS-------- 162 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 A + ++++ KD + Sbjct: 163 --------------------------ASVDAGEVRKFYDATKDAF--------------- 181 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + PE TV + F ++ A L KG+ + + Sbjct: 182 ------------------------FKRPEGYTVNVVAFRGKEAAQRGRTRLLKGEAWDSV 217 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL--AKKGDFTPVIH-GSFGYVIAHVSNI 356 L + + ++ LAD + S+ K G ++ ++ GS Y++ + Sbjct: 218 MGAMSGDLGNFTP-YDKPIFVSKKDLADDLKSVISLKVGSYSNLVKVGSDDYLMVLKRSN 276 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++F EVK+ I + K + + L Sbjct: 277 EKERVMAFDEVKEQIEGVLLDQKRGQMQRAYVADL 311 >gi|153007318|ref|YP_001381643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] gi|152030891|gb|ABS28659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] Length = 323 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 54/370 (14%), Positives = 115/370 (31%), Gaps = 72/370 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + V S L Q + E A++ L + D++V+ L Sbjct: 23 DRVAALVNGEVVTLSELAERAGPALLKAEQ-LPAGAERESAQTAALKR-AFDDVVAERLL 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 ++ LEA +V + + N F L +GI+ + + Sbjct: 81 QSKAAELQLEATEAQVDEAVEDI----KRRNGFDDAALERALKEQGIDRATFRANV---- 132 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R D ++ V + S+ L +++ Sbjct: 133 -----------------------------KREYDAFLVLQYQVRSKVKVSDDDLRNYYQS 163 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + ++ +I + E K + Sbjct: 164 HPQEFGGEDEVKVRHIFLPMPEGATKAQ----------------------------QAKV 195 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + + + Q LK G+ F +A E K + LG + I D +L D+ F+L + G Sbjct: 196 EDQMNRVLQRLKTGEDFAAVAREVSKGPSAAEGGDLGWLRRGTI-DKALEDTAFAL-QAG 253 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + G + V + + SF++ K++I + +A ++ L Sbjct: 254 QLSQPVRAGPGLHLFKVEERRVAGEKSFEDAKEEIRAHLVDQQAGTYRQQLIAELRRDAL 313 Query: 397 LGTSMDEISR 406 + + E+++ Sbjct: 314 IEAKLPELAQ 323 >gi|164688004|ref|ZP_02212032.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM 16795] gi|164602417|gb|EDQ95882.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM 16795] Length = 302 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 41/358 (11%), Positives = 109/358 (30%), Gaps = 72/358 (20%) Query: 39 GSSTVVSVGRQKVPFSSFINS---WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 +S VG + + + ++++ ++ Sbjct: 5 SNSNAFKVGETEFSNEEVDKVKSILTATQSYTDADYLAQFKESKDNDDKIKQEVISYMID 64 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 + Q + ++ V + ++ + + L G++E + Sbjct: 65 NEVVYQQAQKEKIKVTDDEVNQKYSQIEKMLDTN-----QEYKKLLDDAGVDEDYLKETI 119 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K L+ + ++ + + Sbjct: 120 KKDLAVQKYR----------------------------------ENYEQDLKVTDKEVEK 145 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++++KD+++ + ++ + + K ++ S E Sbjct: 146 YYKEHKDDFKEESVEAYHILVSTLDDNNKPVDDSKKE----------------------- 182 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSL 332 + +A+ + +K G F ++A+E S G + + D F L Sbjct: 183 --ELKSKAESLLKEIKNGGDFEKIAKENSDDKSSGKKGGYLGYFTKDSKNAQFTKEAFKL 240 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +KG + V FGY I V+N K + S ++ +++I N++ K ++V ++ Sbjct: 241 -EKGQVSNVFETPFGYEIVKVTN-KKTEQKSLEDSREEIVNRILADKYLDQVNSLREK 296 >gi|296332416|ref|ZP_06874877.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673697|ref|YP_003865369.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150334|gb|EFG91222.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411941|gb|ADM37060.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. spizizenii str. W23] Length = 284 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 27/202 (13%) Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPE--------YKRISYILFDVHEKE 243 ++ + + ++ L ++ + D Y A E +++ Y L + Sbjct: 57 LVQEKVLDKKYKVTDKEIDNKLKEYKTQLGDQYTALEEQYGKDYLKEQVKYELLTQKAAK 116 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 I++++ + + +E K+K ++ ++K A+E + LKKG+KF LA+E Sbjct: 117 DNIKVTDADTKEYWEGLKDKI------RASHILVADKKTAEEVEKKLKKGEKFEDLAKEY 170 Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S LG F+K+ + + + F L K G+ + + +GY I + + Sbjct: 171 STDNSASQGGDLGWFAKDGMV-AEFSKAAFKL-KTGEVSDPVKTQYGYHIIKKTEERGK- 227 Query: 361 TVSFQEVKKDIANQMRITKASE 382 + ++KK++ +++ K ++ Sbjct: 228 ---YDDMKKELKSEVLEQKLND 246 Score = 37.3 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 3/125 (2%) Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 K + V + K+G+ F D+ K + + + F Sbjct: 145 ADKKTAEEVEKKLKKGEKFEDLAKEYSTDNSASQGGDLGWFAKDGMVAEFSKAAFKLKTG 204 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616 V P++ Y + K T + K + S + + D + + + + V Sbjct: 205 EV-SDPVKTQYGYHIIKKTEERGKYDDMKKELKSEVLEQKLNDTTAVQEAVQKVMKKADV 263 Query: 617 TVHDN 621 V D Sbjct: 264 EVKDK 268 >gi|289435560|ref|YP_003465432.1| prsA protein, protein export protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171804|emb|CBH28350.1| prsA protein, protein export protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 295 Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 31/242 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIE 247 + ++ + F+KYK Y E + + Y + E + Sbjct: 62 LGDKYKVTDEQVDSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNMLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G+KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + P+ +F Sbjct: 176 ATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMDE--PATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + KK + Q+ + +K++YK + + + + + D Sbjct: 234 DKDKKAVKESYLQSQLTTENMQKTLKKEYKDANVKVED-KDLKDAFKDYDGSAKTEESTD 292 Query: 420 FA 421 A Sbjct: 293 SA 294 >gi|229496996|ref|ZP_04390701.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229316098|gb|EEN82026.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 714 Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 116/725 (16%), Positives = 232/725 (32%), Gaps = 140/725 (19%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56 L+ IR + + ++V+ V L + + D L S ++ + + +K+ + Sbjct: 4 LQKIRNRAG-----LLIIVIGVALLAFIVGDGLRSGGTLFQMSNNYALKIDGEKIKAEDY 58 Query: 57 INSWKQELGMISQ-----------KIGFVVNSERARSVGLDKKIL--------DNLVSGA 97 +Q ++ + E +S+ L+K+ + L++ Sbjct: 59 HQRLQQLQEAAEANGNHLTDEQRMQLNNQLAEEYIQSIALEKEADALGLKVTPEELIALV 118 Query: 98 TLD---------QFIEDIGLEADH--------GRVWG-EIARSPLFHGKDNKFSHDVFVS 139 D QFI +G+ ++ +IA+ P + + + + Sbjct: 119 LGDGVSPAYQAQQFISQLGINPSDRNAVQTFLEQISDNQIAQLPAEQQGQMRMIKNSWDA 178 Query: 140 RLAREGINEK---EYIDHYTKMLSRTDVVGMFVGGM---------RPSNLLLDQAKRFYF 187 L NE+ ++ T+ + V F+ + PS +L D R Sbjct: 179 LLRSVR-NERLGSKFNAIMTRSYAINKVDAQFLSDVPSRDVAVVRTPSTILADTTVRATD 237 Query: 188 -ENRSV---------------DYIVLNNRHVPAIADPSNA---------------VLTQW 216 E R +N P+ D S+A + Sbjct: 238 DEVREYYNKRPRMFIQKYPFTRVEYINVAIRPSAKDYSDALALMNKTRTSLLGASDASTI 297 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYE-----------KNKEKY 264 + + + APEY L D+ +E I + E+ A K K Sbjct: 298 TRNHSEAF-APEYYMSGQELRDIQLPSSLVEFIESSEVGAVNTPSIENDSYSLVKVMAKK 356 Query: 265 FSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF----SKE 318 +P +V N +AD ++ G F +A + G + + Sbjct: 357 SAPSGVQARIIVLDSLNATKADSIVGAINGGAAFADMAMRYSADPQTKAQGGYIIFQDRM 416 Query: 319 YIPDVSLADSIFSLAKKGDFTPV-----IHGSFGY--VIAHVSNIKPSFTVSFQEVKKDI 371 +PD +L +++ ++ K V + G VI V+ P T K I Sbjct: 417 GMPDTTLTEAMATMQKLDTLYKVPVGRAFTSTLGATKVIMQVAKAMPEAT------KYKI 470 Query: 372 AN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 A + +T + E Y + LA G S DE+++ + +++ V A + + Sbjct: 471 AYINLPVTFSEGTFSEKYSTINNILASGKSFDEMAKEAEAKGLEV--VRDARVEPTSINL 528 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 A IP + + + + D + + +KE +PA + E+V D++ Sbjct: 529 ANIPSSREAVSWLLKAKPGEVNEKVFRCGDANLVVATVKEQVPAGTQPFEDVKEDIRDYL 588 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 K + ++L + EGK F D+ A + + I + + +S Sbjct: 589 TMEK-------RGDKLATDL--EGKKFADLDGYAVAMQASVDTIPSVSLVARGSVTPMLS 639 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFK-----VTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605 P +G +V K T + + L Q + Sbjct: 640 AHAMTTAINTISKPFRSGTEVMVVKPLREIKTPVGQSQEAQLRQQRRALGQGLGYRAFQQ 699 Query: 606 VIAYL 610 ++ + Sbjct: 700 LMRDM 704 >gi|125973074|ref|YP_001036984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum ATCC 27405] gi|256004577|ref|ZP_05429555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum DSM 2360] gi|281417269|ref|ZP_06248289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum JW20] gi|125713299|gb|ABN51791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum ATCC 27405] gi|255991449|gb|EEU01553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum DSM 2360] gi|281408671|gb|EFB38929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum JW20] gi|316940705|gb|ADU74739.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum DSM 1313] Length = 413 Score = 107 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 49/370 (13%), Positives = 126/370 (34%), Gaps = 35/370 (9%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMI---SQKIGFVVNSERARSVGLDKKILDNLVSG 96 S + V +++ + F + Q+ ++ + + + + K++L L+ Sbjct: 54 SKVIAEVNGEQILYKDFYFIYSQQAAYYGLTTEDEDSLSDDTKEILNTIKKELLTQLIQQ 113 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 Q ++ G E R+ + + + E+ + + Sbjct: 114 KLAKQKAKEAGYEVTKERLDEA---------------SEAIEEMIRN--MAEQMKLSSPS 156 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN--RHVPAIADPSNAVLT 214 + SR + S L + + + +Y+++ + + ++ + Sbjct: 157 EAESRDFLKEA--RDFINSELKAMRITMDEYIRDTAEYMIVTDFMEDLTKDIVVTDEEIK 214 Query: 215 QWFEKY-KDNYRAPEYKRISYILFDVHEKEKK----IEISNDELQAEYEKNKEKYFSPEI 269 +++++ K PE + + + I + +E Q E Sbjct: 215 KYYDEQLKIQQENPEEAAYAEVQLIQPASSRVKHILIALPEEEQQEYQNLKSEGKDEEAE 274 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-----DISLGSFSKEYIPDVS 324 +++ + + +A+E K G+ F L +E G+ + +K S Sbjct: 275 AYLKEKLEAIKPKAEEVLNKAKNGEDFEALIKEYGEDPGMESEQYKDGYTVTKNSGFIKS 334 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D+ +L G+ + ++ G +GY I V + + +E K +I + ++ K + + Sbjct: 335 FEDASLALG-VGEISDLVEGPYGYHIIKVYEKTEAKPYTQEEKKSEIESLLKSQKKTNFM 393 Query: 385 KEDYKRLEEF 394 E K E Sbjct: 394 NEKMKEWESA 403 >gi|114327287|ref|YP_744444.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis CGDNIH1] gi|114315461|gb|ABI61521.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis CGDNIH1] Length = 346 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 6/145 (4%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 +++ L+ +++K E ++ P + EA LK G F ++A+E+ K Sbjct: 176 TDEALRKKFDKELAGKPGEEEVHARHILVPTEDEAKRIIAELKAGGDFAKIAKERSKDPG 235 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSF 364 LG F + + + + F+L K + +P +H FG+ + + + +F Sbjct: 236 AANGGDLGFFKQADMV-PEFSKAAFAL-KNNEVSPTPVHTQFGWHVIQTLEHRRAPAQTF 293 Query: 365 QEVKKDIANQMRITKASEKVKEDYK 389 ++ + + Q+ + V K Sbjct: 294 EQARDQLRQQVIQDGVKDLVTNAMK 318 Score = 45.0 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 1/118 (0%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 +A +++ E K G +F I K N + + + F+ Sbjct: 207 EDEAKRIIAEL-KAGGDFAKIAKERSKDPGAANGGDLGFFKQADMVPEFSKAAFALKNNE 265 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V P+ + V + + P Q ++ L Q + +D + ++ V Sbjct: 266 VSPTPVHTQFGWHVIQTLEHRRAPAQTFEQARDQLRQQVIQDGVKDLVTNAMKGAKVE 323 Score = 38.0 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 10/70 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S+ V V + ++ + + Q V+ +L+ ++ L Sbjct: 86 STVVGRVNGADIHLGDLEDAARNLPEQMRQAPPQVIYP----------ILLNQMLQREAL 135 Query: 100 DQFIEDIGLE 109 Q GL+ Sbjct: 136 VQAARKEGLD 145 >gi|319406090|emb|CBI79720.1| peptidyl-prolyl cis-trans isomerase [Bartonella sp. AR 15-3] Length = 317 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 65/149 (43%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I++ +++A Y K + ++ ++EA++ + L KG+KF ++A++ Sbjct: 137 KIADADVKALYNKEIAALPKEDEIKARHILVKTKEEAEKIIKRLNKGEKFEEIAKKDSTD 196 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG FS+ + S ++ F+L I FG+ + + + + Sbjct: 197 GSSAVGGDLGYFSRGQMVK-SFEEAAFNLKVGEYTKKPIESPFGWHVIKIEDRRLKQPPV 255 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK+ + Q+ + + + ++ Sbjct: 256 FDDVKEVLRTQLIRERYQTLITDLRSKVN 284 >gi|301059205|ref|ZP_07200143.1| SurA N-terminal domain protein [delta proteobacterium NaphS2] gi|300446695|gb|EFK10522.1| SurA N-terminal domain protein [delta proteobacterium NaphS2] Length = 324 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 117/384 (30%), Gaps = 81/384 (21%) Query: 20 VLFVPFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + + FL G + L + + V V V ++Q G Sbjct: 6 IFVLMFLFVGANAFLQGKANGEIYNRVVAIVNADVVTLYELNT-------RLTQMTGMAP 58 Query: 76 NS----ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 ++ ++ + + +K+L+ L+ + I+++ + V I +++ Sbjct: 59 DALKRKSESQYLEMRRKVLEMLIEEKIAIEKIKEMKINVPQSEVDAAIET---LKRENDM 115 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 D+ V+ L +G++ EY L R ++ Sbjct: 116 TQEDL-VAGLKAQGLSLDEYRKRLKTELERRRLIN------------------------- 149 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 V + ++ + +++ +KDNY ++ I Sbjct: 150 --------YEVRSKIIITDEEVQAYYDTHKDNYSTKGKVHLAMIFL-------------- 187 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 K ++ E R + + +AD+ +K G+ F LA + Sbjct: 188 -------KQEDPGNREEARALRR-------KADQIIGKIKAGENFGTLAAQFSNGPGAKD 233 Query: 312 LGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 G I +++ + G+ I G I V SF++VK Sbjct: 234 GGDLGVFNISELNSEMAASIKDLSSGEIGTPIVRPNGIQIIKVVEKDEGGEKSFEKVKNA 293 Query: 371 IANQMRITKASEKVKEDYKRLEEF 394 I + + K ++ K L E Sbjct: 294 IRSTLYREKMNQAYDAWIKDLREK 317 >gi|226224827|ref|YP_002758934.1| post-translocation molecular chaperone [Listeria monocytogenes Clip81459] gi|254825217|ref|ZP_05230218.1| rotamase [Listeria monocytogenes FSL J1-194] gi|254853343|ref|ZP_05242691.1| export protein [Listeria monocytogenes FSL R2-503] gi|254992110|ref|ZP_05274300.1| post-translocation molecular chaperone [Listeria monocytogenes FSL J2-064] gi|255520683|ref|ZP_05387920.1| post-translocation molecular chaperone [Listeria monocytogenes FSL J1-175] gi|300763971|ref|ZP_07073967.1| protein export protein [Listeria monocytogenes FSL N1-017] gi|225877289|emb|CAS06003.1| Putative post-translocation molecular chaperone [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606707|gb|EEW19315.1| export protein [Listeria monocytogenes FSL R2-503] gi|293594463|gb|EFG02224.1| rotamase [Listeria monocytogenes FSL J1-194] gi|300515312|gb|EFK42363.1| protein export protein [Listeria monocytogenes FSL N1-017] Length = 293 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266 >gi|46908453|ref|YP_014842.1| protein export protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094429|ref|ZP_00232114.1| protein export protein [Listeria monocytogenes str. 4b H7858] gi|254931668|ref|ZP_05265027.1| rotamase [Listeria monocytogenes HPB2262] gi|67461025|sp|Q71XE6|PRSA2_LISMF RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|46881724|gb|AAT05019.1| protein export protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017195|gb|EAL08043.1| protein export protein [Listeria monocytogenes str. 4b H7858] gi|293583223|gb|EFF95255.1| rotamase [Listeria monocytogenes HPB2262] gi|328472118|gb|EGF42993.1| post-translocation molecular chaperone [Listeria monocytogenes 220] gi|332312671|gb|EGJ25766.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A] Length = 293 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKTLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266 >gi|229173017|ref|ZP_04300568.1| Foldase protein prsA 1 [Bacillus cereus MM3] gi|228610350|gb|EEK67621.1| Foldase protein prsA 1 [Bacillus cereus MM3] Length = 288 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFK 279 Score = 42.7 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDQ 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 241 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 268 Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD+ L Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|77458207|ref|YP_347712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] gi|77382210|gb|ABA73723.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] Length = 317 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 115/362 (31%), Gaps = 74/362 (20%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92 ++ + V + + + + L + + + N + + L + LD Sbjct: 15 SVGMANNEPVAARVNGEAISEFRLERFFAEYLEDQGRAVASIRNPKAYKQ--LRQAALDT 72 Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 L+ L Q G++ D V ++ R+ F+ RL G +E + Sbjct: 73 LIDKELLWQESRKRGVKIDEQTVREQVERT---RTAIGGTD--KFLQRLQDAGFDEASFT 127 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 ++ + L+ + + + P Sbjct: 128 EYTHRELAAQRMF----------------------------------AELTQVQAPDEQT 153 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 + +F +++ APE + +IL V + L+ Sbjct: 154 VRAFFAEHRAEMAAPEQVQARHILIKVAGDADAATVEAARLRL----------------- 196 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSI 329 +E ++ G+ F +A+ + + LG F++ + + + Sbjct: 197 -----------EELRAAIAGGQTFASVAQSGSEDVTASQGGDLGYFARGQMV-PAFETAA 244 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F+L K G+ + + FG+ + V N K + V ++ + + + + ++ ++ Sbjct: 245 FAL-KPGEVSEAVRTPFGWHLIFVENHKEAADVPEEQGLETVRAYLARQQQTQARRQVLA 303 Query: 390 RL 391 +L Sbjct: 304 QL 305 >gi|323137132|ref|ZP_08072211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp. ATCC 49242] gi|322397490|gb|EFY00013.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp. ATCC 49242] Length = 297 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 10/176 (5%) Query: 225 RAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 PE+ + L D E K + ++ Y++ + ++ Sbjct: 94 ETPEFAKKLAYLRDKALMETLLGNVAKQAATEAAIKQTYDEAAKNQKPETEYHAHHILVG 153 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++++A +A +K G+ F ++ E K + LG F+K+ + AD+ L + G Sbjct: 154 SEEDAKKALARVKGGEDFAKVVAEVSKDSGPKNGDLGWFTKDRMV-PEFADAAAKL-EPG 211 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + FG+ I + +P +VK +A + S+ V + + + Sbjct: 212 QISDPVKTQFGWHIIKLDEKRPKAFPPLDQVKDQVARYVVQKAQSDLVVKLREAAK 267 >gi|189467728|ref|ZP_03016513.1| hypothetical protein BACINT_04120 [Bacteroides intestinalis DSM 17393] gi|189435992|gb|EDV04977.1| hypothetical protein BACINT_04120 [Bacteroides intestinalis DSM 17393] Length = 712 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 88/728 (12%), Positives = 204/728 (28%), Gaps = 138/728 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGEALSAQDYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G ++ + + ++ N V+ ++ + +G+ + I Sbjct: 61 EYTEVVKFSRGTSALTDE-ENNQIKDEVWRNYVNNKLIENEAKKLGISVSKAEIQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157 + F F D+ L + +Y ++Y K Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNTAQM-PAQYAEYYQSMYKFWSFLEK 178 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD----------------YIVLNNRH 201 L + + + + S + F+ R I + + Sbjct: 179 QLIQNRLAEKYQALVSKSLFSNPVEAQVAFDARVDQSDLLLAAIPYSSIEDSTITITDAD 238 Query: 202 VPAIADPSNAVLTQWFEKYKDNYR------APEYK------------------------- 230 + A D Q+ E + +PE + Sbjct: 239 LKAAYDKKKEQFRQYVETRNIKFIDVQVTASPEDRNAIQEEVVEYTEQLAGTPGDYSTLV 298 Query: 231 -----RISYILFDVHEKEKKIEI-------------------SNDELQAEYEKNKEKYFS 266 + YI K ++ +++ + + K Sbjct: 299 RAAGSEVPYIDLYYTSKALPTDVVARLDSVSVGGVYGPYYNATDNTINSF--KKLATASM 356 Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ + AD + ++K G F ++A++ G++ + IS ++ Sbjct: 357 PDSIQYRQIQVVAEDATKTKALADSIYTAIKGGADFAEIAKKYGQTGESTWISSANYEGA 416 Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + +L ++I +L K + + +I V + K VK + Sbjct: 417 QLDGDNLKYVNTITTLGKN-EMANLSLAQAN-IILQVMDKKA--------VKDKYKVAVI 466 Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + E + Y +F+A +++++ + L +D + +I Sbjct: 467 KRPVEFSKETYSKAYNDFSQFIAANPTLEKMVANAEDAGYKL--LDRNDLYSSEHGIGSI 524 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 ++ L F + V + IP R L V ++ + Sbjct: 525 RGTKEALRWAFSAKPGEVSGLYECGESDRMLVVGVSAIIPEGYRPLALVKDQLRLELIRD 584 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRD----IGKNLGASLLTTNQINRMDNENKFFGYDGI 549 K KA +++ + G D + + + S+ + Sbjct: 585 K-------KAEKIMADMKAAGATSFDQYKSMAEAVSDSVKHVTFAAPAYVPALRASEPLV 637 Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 S PI+ V + + + Q M+ + + Sbjct: 638 GAYASIAELNKLSAPIKGNGGVFVLQPYAKEKLNETFNQETEEATLQNMHARMASQFLND 697 Query: 610 LKSQYSVT 617 L + V Sbjct: 698 LYLKADVK 705 >gi|42781422|ref|NP_978669.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987] gi|42737344|gb|AAS41277.1| protein export protein prsA [Bacillus cereus ATCC 10987] Length = 283 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 87/234 (37%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PELK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK DI + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDDIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKKT 276 Score = 44.2 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 52/148 (35%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +++++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNYKPELKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L D + Y +++ + + +EV D Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDD 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 236 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 263 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD L Q +D V+ L Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDDIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|218897938|ref|YP_002446349.1| foldase protein PrsA [Bacillus cereus G9842] gi|218541254|gb|ACK93648.1| foldase protein PrsA [Bacillus cereus G9842] Length = 280 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 93/237 (39%), Gaps = 27/237 (11%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWF 217 S ++V G + S+ + + +N S V VL++++ + + L + Sbjct: 24 SSDNIVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLDDKYKVTDEEVT-KQLKELK 82 Query: 218 EKYKDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +K DN+ + + + L EK K ++ + + Y+ Sbjct: 83 DKMGDNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYK---------P 133 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSL 325 V ++ ++K A E + L G+ F LA++ + G E+ P Sbjct: 134 KLQVSHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEF 193 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D+ + L + G + + SFGY I +++ K S++E K++I ++ + + Sbjct: 194 EDAAYKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKSYEEEKENIRKELEQQRIQD 247 >gi|116620640|ref|YP_822796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] gi|116223802|gb|ABJ82511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] Length = 342 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 127/375 (33%), Gaps = 86/375 (22%) Query: 21 LFVPFLIWGLSDALF----SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 +FV F G++ ++ V + S +++ + S+ + Sbjct: 4 IFVVFA-AGVAALTLASCKHSPPANVAAEVDNHAITNSDLEKTYQSQYAQQSE----GAS 58 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 ++ + LD +L ++++ + + E +GL A V EI++ ++ + Sbjct: 59 EDQILTQKLD--LLSSMITQEIMLRKAEKLGLAAVDADVDAEISKMRA------PYTKEE 110 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 F +L+ + + + L+ +V Sbjct: 111 FEKQLSAQHMTLDDLKLKVRSKLTVDKLVN------------------------------ 140 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + + + ++A + ++ K + PE +I ++ Sbjct: 141 ---KEITSKITITDADVKNFYNNNKAAFNLPE----------PAIHMAQILVTP------ 181 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQSLKKGKKFIQLAEEQGKS----LS 308 + P +R ++ N KEA ++ LK+G F LA+ + + Sbjct: 182 -------FPDPNVRNLKNSKAQNDKEARAKIEDILGRLKRGDDFGMLAQNYSEDANSAPN 234 Query: 309 DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 +G + + + L + SL G +P+I GY I V + +P+ + Sbjct: 235 GGDMGFVRQSDLEKVNPELRKMVISLPPNG-VSPIIPTPEGYRILKVISKEPAGQRELND 293 Query: 367 --VKKDIANQMRITK 379 V+++I + + +K Sbjct: 294 PRVQQNIRDTLLNSK 308 >gi|146337720|ref|YP_001202768.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] gi|146190526|emb|CAL74525.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] Length = 274 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 5/151 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K + D ++ YE+ ++ + ++ + EA L KG F +LA+++ Sbjct: 101 KAATTPDAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAKGADFAELAKKKS 160 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+KE + A+ FS+ + G + + FG+ I V + Sbjct: 161 KDPGASDGGDLGFFTKEQMV-PEFANVAFSM-EPGKISDPVKTQFGWHIIKVEEKRNRKP 218 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F++VK I + ++ V + + + Sbjct: 219 PEFEQVKSQIETYVTRKAQADYVGKLREAAK 249 >gi|77464749|ref|YP_354253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides 2.4.1] gi|77389167|gb|ABA80352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides 2.4.1] Length = 286 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 5/149 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ LQA Y+ ++ ++ EA + + + G F LA+E Sbjct: 120 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEIDGGADFATLAKEHSSD 179 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + SLG F + D++ + K G+ I FG+ + ++ + + S Sbjct: 180 GAAANGGSLGWFGLGMMVKP-FEDAVVKM-KPGEVVGPIQTQFGWHLVKLNETRIAEKPS 237 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 +++ ++A Q+ + + E + E Sbjct: 238 LDDMRDELAGQIEQEAVARHIDEVTAKAE 266 >gi|75764532|ref|ZP_00744003.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487981|gb|EAO51726.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 268 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 90/233 (38%), Gaps = 27/233 (11%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 +V G + S+ + + +N S V VL++++ + + L + +K Sbjct: 16 IVTTKSGSISESDFNKKLKENYGKQNLSEMVVEKVLDDKYKVTDEEVT-KQLKELKDKMG 74 Query: 222 DNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 DN+ + + + L EK K ++ + + Y+ V Sbjct: 75 DNFNTYMESNGVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYK---------PKLQV 125 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSI 329 ++ ++K A E + L G+ F LA++ + G E+ P D+ Sbjct: 126 SHILVKDEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAA 185 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + L + G + + SFGY I +++ K ++E K++I ++ + + Sbjct: 186 YKL-EVGQLSEPVKSSFGYHIIKLTDKKE--LKPYEEEKENIRKELEQQRIQD 235 >gi|83953128|ref|ZP_00961850.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1] gi|83842096|gb|EAP81264.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1] Length = 280 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 5/165 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK +++ +ELQA Y++ E + ++ ++EA + L +G F +LA Sbjct: 107 EKAMAQDVTEEELQAAYDEAYADAEPTEEFSASHILVETEEEAQAVKKELDEGADFAELA 166 Query: 301 EEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +E+ S +LG F + + ++ +L + G + + FG+ + + + + Sbjct: 167 KEKSTGPSGPAGGTLGWFGPGMMV-PAFETAVAAL-EVGAVSEPVETQFGWHVIKLDDKR 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++VK ++ Q+R KA +++ + + + S+D Sbjct: 225 QKEAPKLEDVKDELETQVRQVKAQTLIEKTTEAADVDRSAADSID 269 >gi|110635342|ref|YP_675550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp. BNC1] gi|110286326|gb|ABG64385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp. BNC1] Length = 351 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 I+++EL A YE+ K E ++ +++EA L +G F ++A+E+ K Sbjct: 161 PITDEELNARYEEEVAKIPQQEEVHARHILVDSEEEAKNIITQLDEGGDFAEIAKEKSKD 220 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + LG F++ + + + F++ + FG+ + V + + + Sbjct: 221 GAAANGGDLGYFTEGAMV-PEFSKAAFAMEPGAHSEEPVKTQFGWHVIKVEDKRMQPPPA 279 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 ++VK I + + K E + + E Sbjct: 280 LEQVKDQIRSMVIRDKYMETLVSLRENAE 308 >gi|296329574|ref|ZP_06872060.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672771|ref|YP_003864442.1| putative secretion protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153317|gb|EFG94180.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411014|gb|ADM36132.1| putative secretion protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 297 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 7/160 (4%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 +I Y + + I+ISN EL++ Y KNKE Y + + +V +++EA E + L Sbjct: 118 QIRYNILLEELLTRDIDISNKELKSFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKEL 177 Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHG 344 K G F +A E+ LG ++ + IP + ++ +L + I Sbjct: 178 KGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAQ-TLKEDEWSDEPIKV 236 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 S GY + + + T S+ EVK I Q+ + + +K Sbjct: 237 SNGYAVIQLKEKLKARTFSYDEVKDQIRRQIAMDQLGDKA 276 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 9/120 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFR 442 +E+ + + + L G+S + ++ P G + + Y E+ L Sbjct: 167 EEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAQTLKE 226 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 D+P+ Y +Q+KE + AR +EV +++ + ++ + K Sbjct: 227 DEWSDEPIKVS-------NGYAVIQLKEKLKARTFSYDEVKDQIRRQIAMDQLGDKATVK 279 >gi|222149929|ref|YP_002550886.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4] gi|221736911|gb|ACM37874.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4] Length = 291 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 4/134 (2%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 +++E++A YEK + ++ + EA + + L GK F +LA+E+ S Sbjct: 116 TDEEVKARYEKEIAALPKEQEIHARHILVKTEDEAKDVIKQLDAGKDFAELAKEKSTDSS 175 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG FSK + ++ F+L + FG+ + V I+ + F+ Sbjct: 176 GSDGGDLGFFSKGRMV-PEFEEAAFALKPGTYTKTPVKSQFGFHVIKVEEIRDAAPPKFE 234 Query: 366 EVKKDIANQMRITK 379 +V++ + + K Sbjct: 235 DVQQQVRQLVMRDK 248 >gi|258405810|ref|YP_003198552.1| SurA domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798037|gb|ACV68974.1| SurA domain protein [Desulfohalobium retbaense DSM 5692] Length = 311 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 42/357 (11%), Positives = 98/357 (27%), Gaps = 81/357 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + +R + K++L +V L Sbjct: 27 DRIVAVVNGEIITLFELNQKADPVVERFRSQQPGSLTEDRIEE--IKKRVLQTMVDNMLL 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E + +E + V I + + LA EG++ + + + L Sbjct: 85 RQEAERLEMEIEDAEVQDRIEEM----KTQRGWDDERLDQMLANEGLDRSSFEKNIREDL 140 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R +VG V +N + +++ Sbjct: 141 MRRRLVGAM---------------------------------VRRKVVVTNEEIQTFYKD 167 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++ + + + L P+ Sbjct: 168 NQEQFAQEKKVDLRL----------------------------------------LAVPS 187 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337 +A + Q + G F Q A++ + + G D++ + G Sbjct: 188 VDKAKQLRQRITDGDLDFAQAAKQFSQGPAAGQGGDLGWVKWADLAPQWKEVLRSTSPGS 247 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 T I ++ +++ V+ IA+ +R K ++++ +RL + Sbjct: 248 MTEPFSLQGQTAILYLEDMQKGQVQPLSAVRDRIADTLRGPKFEKQLETYLQRLRDK 304 >gi|224418500|ref|ZP_03656506.1| cell binding factor 2 precursor major antigen PEB4A [Helicobacter canadensis MIT 98-5491] gi|253827813|ref|ZP_04870698.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142030|ref|ZP_07804223.1| cell binding factor [Helicobacter canadensis MIT 98-5491] gi|253511219|gb|EES89878.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131061|gb|EFR48678.1| cell binding factor [Helicobacter canadensis MIT 98-5491] Length = 271 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 77/155 (49%), Gaps = 9/155 (5%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG--------KKF 296 K+++S+ E++ Y +NK K+ PE V+ ++ ++ +A LKK ++F Sbjct: 108 KVKVSSSEIEKFYNQNKTKFVQPETAKVKHILVSSEADAKNIIADLKKAGKNVASKFEEF 167 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + + G + + LG +K + AD+ F L K + FGY + +V + Sbjct: 168 AKAKSKDGSAQNGGELGWIAKGQVV-PEFADAAFKLNKGQYTQTPVKTQFGYHVIYVDDK 226 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +P+ T++ ++V I +++TK E V+++ + L Sbjct: 227 RPTTTLALKDVSGQIEQNLKLTKFQENVRKEGQDL 261 >gi|18309250|ref|NP_561184.1| hypothetical protein CPE0268 [Clostridium perfringens str. 13] gi|110800910|ref|YP_694723.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens ATCC 13124] gi|168207845|ref|ZP_02633850.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens E str. JGS1987] gi|168211827|ref|ZP_02637452.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens B str. ATCC 3626] gi|168215167|ref|ZP_02640792.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens CPE str. F4969] gi|168218257|ref|ZP_02643882.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens NCTC 8239] gi|169344703|ref|ZP_02865666.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens C str. JGS1495] gi|18143926|dbj|BAB79974.1| hypothetical protein [Clostridium perfringens str. 13] gi|110675557|gb|ABG84544.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens ATCC 13124] gi|169297170|gb|EDS79284.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens C str. JGS1495] gi|170660843|gb|EDT13526.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens E str. JGS1987] gi|170710226|gb|EDT22408.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens B str. ATCC 3626] gi|170713436|gb|EDT25618.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens CPE str. F4969] gi|182379724|gb|EDT77203.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens NCTC 8239] Length = 248 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 99/249 (39%), Gaps = 21/249 (8%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----------RSVDYIVLNNRHVPAIADPS 209 V+ S+ + + R+ + R V + + A + Sbjct: 1 MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIAFELMSEFAKET 60 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 T+ F+ + + + + + + +++DE +A YE++KE + E Sbjct: 61 GLDKTEEFKDQLNKF-----AKELLAQMVMKKTLSSVTVTDDEAKAFYEEHKENFVELET 115 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 T + ++ +++EA + + + G F A + S +LGSFSK + Sbjct: 116 VTAKHILVASEEEAKKVEEEIASGSITFEDAANKYSSCPSKEQGGNLGSFSKGMMV-PEF 174 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 ++ F+L + G + + FGY + V + + T +F++VK+ + N + + +K Sbjct: 175 EEAAFNL-ELGVVSAPVKTQFGYHLIKVEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYL 233 Query: 386 EDYKRLEEF 394 E K L E Sbjct: 234 ELIKELREK 242 >gi|297566395|ref|YP_003685367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] gi|296850844|gb|ADH63859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus DSM 9946] Length = 322 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 107/358 (29%), Gaps = 87/358 (24%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGA 97 V VG Q + S F W + Q+ G E + L L Sbjct: 29 DDPVVAEVGGQALKKSYFDFEWSFFVKTSLQRQGMPATPESEAQFERFKPQFLGRLAKDY 88 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 + + E GL A V ++A + + S + F L++ GI ID Y Sbjct: 89 AVIKASERAGLAASKEAVENQVAE-----ARKDFESDEAFNQALSQVGIAS---IDDYR- 139 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 M V N L+Q + PS + L + Sbjct: 140 ---------MLVYEALTYNAYLEQLQE--------------------QVKPSESALRLIY 170 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + + PE ++ Sbjct: 171 GLSQAEFTTPETY----------------------------------------CASHILV 190 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 + EA + L +G F LA++ + LG + +++ L Sbjct: 191 VSGDEAISLIRQLGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYV-APFENAMIRL- 248 Query: 334 KKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K G + + FG+ I ++ I+PS F EVK IA ++ + +A EK+ + + Sbjct: 249 KAGQTSREPVRTEFGFHIIRLNKIEPSTVRPFDEVKSSIAERV-VQRALEKLLDRIAQ 305 Score = 40.4 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 7/125 (5%) Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 ++ L L G ++++ G + +G VA L Sbjct: 194 DEAISLIRQLGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYVAPFENAMIRLKAGQT 253 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 +P+ + + +++ + P+ R +EV + + + + + A + Sbjct: 254 SREPVRTEF-------GFHIIRLNKIEPSTVRPFDEVKSSIAERVVQRALEKLLDRIAQR 306 Query: 506 LVLEY 510 + + Sbjct: 307 VGITL 311 >gi|237752063|ref|ZP_04582543.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376630|gb|EEO26721.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 271 Score = 106 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK--- 295 + ++ K+++ + E+ Y +NK K+ PE ++ ++ EA LKK K Sbjct: 102 MRKQMDKVKVLDSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAELKKAGKNVA 161 Query: 296 --FIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA E+ K + LG +K + A++ F L K T + FGY + Sbjct: 162 GKFDSLAREKSKDGSAQNGGELGYIAKNQVV-PEFANAAFKLQKGAYTTTPVKSQFGYHV 220 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + KP+ T++ +++K I +++ K E++K++ + L + Sbjct: 221 ILVEDKKPAGTIALKDIKGQIEQNLKLKKFQEEIKKEGEELRKK 264 >gi|221640663|ref|YP_002526925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides KD131] gi|332559643|ref|ZP_08413965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides WS8N] gi|221161444|gb|ACM02424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides KD131] gi|332277355|gb|EGJ22670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides WS8N] Length = 284 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 5/149 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ LQA Y+ ++ ++ EA + + + G F LA+E Sbjct: 118 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEIDGGADFATLAKEHSSD 177 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + SLG F + D++ + K G+ I FG+ + ++ + + S Sbjct: 178 GAAANGGSLGWFGLGMMVKP-FEDAVVKM-KPGEVVGPIQTQFGWHLVKLNETRIAEKPS 235 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 +++ ++A Q+ + + E + E Sbjct: 236 LDDMRDELAGQIEQEAVARHIDEVTAKAE 264 >gi|148258757|ref|YP_001243342.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1] gi|146410930|gb|ABQ39436.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1] Length = 274 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 5/151 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K + D ++ YE+ ++ + ++ + EA L KG F +LA+++ Sbjct: 101 KAATTPDAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAKGGDFAELAKKKS 160 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+KE + A+ F+L + G + + FG+ I V + Sbjct: 161 KDPGASDGGDLGFFTKEQMV-PEFANVAFAL-EPGKISDPVKTQFGWHIIKVEEKRNRKP 218 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK I + ++ V + + + Sbjct: 219 PEFDQVKSQIETYVTRKAQADYVSKLREAAK 249 >gi|237816303|ref|ZP_04595296.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A] gi|237788370|gb|EEP62585.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A] Length = 381 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 137 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 192 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 193 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 252 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 253 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 311 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 312 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 371 Query: 409 KIVSIDLPL 417 D P Sbjct: 372 DASEDDAPQ 380 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 204 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 260 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 261 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 320 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 321 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 358 >gi|331092188|ref|ZP_08341018.1| hypothetical protein HMPREF9477_01661 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401960|gb|EGG81534.1| hypothetical protein HMPREF9477_01661 [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + E K +E+S++E++A Y+ N +++ + + ++ ++++ +S+ G+K Sbjct: 83 LAMRETMKGVEVSDEEVKAYYDANSQQFKKGATVSAKHILTDSEEKCQTILESILNGEKT 142 Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A+E S LG F + + D F A+ G+ + FGY + Sbjct: 143 FEDSAKEFSTCPSGTRGGDLGQFGRGQMVK-EFEDVAFE-AEIGEVKGPVKTQFGYHLIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V N +F EVK+ I + K + K E L+E Sbjct: 201 VENRTEESVAAFDEVKETIRRSLVQQKQNAKYMEQVNVLKEK 242 >gi|229109756|ref|ZP_04239342.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15] gi|229144911|ref|ZP_04273308.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24] gi|229150538|ref|ZP_04278754.1| Foldase protein prsA 1 [Bacillus cereus m1550] gi|228633031|gb|EEK89644.1| Foldase protein prsA 1 [Bacillus cereus m1550] gi|228638633|gb|EEK95066.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24] gi|228673797|gb|EEL29055.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15] Length = 293 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.1 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|212702600|ref|ZP_03310728.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098] gi|212674041|gb|EEB34524.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098] Length = 320 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 110/361 (30%), Gaps = 86/361 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD-KKILDNLVSGAT 98 + V Q + + ELG + ++A V + +K+LD+++ Sbjct: 33 NKIAAVVNGQVITMFDLQKAALPELGRAR---LNPNDPKQADKVNVVFRKVLDSMIMDIL 89 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L+Q + + + A + E+ + K + + F + L ++G++ E Sbjct: 90 LEQEAKRLSITASDSEIDQELTKMM----KMRRMNRAQFEAELKKQGMSVDELRKTMKTN 145 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + R V+G VG R V ++ + ++E Sbjct: 146 MLRQRVMGAEVG------------------RRVV---------------VTDDEIRAYYE 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 K+KD Y++N +V+ Sbjct: 173 KHKD--------------------------------TMYDRNGLHMGL--------IVYN 192 Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKG 336 A + G F + A + + + G E+ +S K G Sbjct: 193 PNVNARSIAAQIASGSLSFEEAARKYSIAPNREKGGDMGPVEWGRLNPEWESRLEKMKPG 252 Query: 337 DFTPVIHGSFG---YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 D T + + P ++F+E + I N +R KA E+ E ++L Sbjct: 253 DVTDIFTVQGHKAQVHLFRPGQSGPGRPMTFEEARPVIDNILRQPKAMERFDEYSQQLRN 312 Query: 394 F 394 Sbjct: 313 K 313 >gi|306820710|ref|ZP_07454338.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551320|gb|EFM39283.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 382 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 104/266 (39%), Gaps = 35/266 (13%) Query: 195 IVLNNRHVPAIAD------PSNAVLTQWFEKYK--DNYRAPEYKRISYILFDVHEKEKKI 246 + +++ V A S + ++F K N+ + + K Sbjct: 108 LTVDDSSVDANVKQYTQILESAPDIKKYFADNKLDTNFIKAMSTKDLVKAALEKDFTDKN 167 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QKEADEAFQSL 290 +++ E+ A YEKNK ++ S E ++ +K+ DE ++ Sbjct: 168 QVTQAEIDAYYEKNKAEF-SNEQIRASHILIKTVNYDLSDMPKDKVEAAKKQIDEIYEKA 226 Query: 291 KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA++ G+ + LG F+++ + +D+ F+L G+ + + +G Sbjct: 227 IAGEDFAELAKQYGQDGTKDTGGDLGYFTRDRMVK-EFSDAAFAL-NIGEISKPVKTQWG 284 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL----EEFLALGTSMDE 403 Y I + + K S V + K+ + + ++ K ++ +KE ++ +E L G D Sbjct: 285 YHIIKLVD-KKSENVDVAQAKEYVKSLLQKNKFNDYIKELKEKAKITKDEELLKGAEKDI 343 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKE 429 + K + + K + Sbjct: 344 VPHDTKAKEQNKKPENATDKTTNDGD 369 Score = 38.0 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 E + K + E + G++F ++ K G + + F+ + Sbjct: 213 EAAKKQIDEIYEKAIAGEDFAELAKQYGQDGTKDTGGDLGYFTRDRMVKEFSDAAFALNI 272 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ Y + K+ + K V + Y+ ++ K+ + I LK + +T Sbjct: 273 GEI-SKPVKTQWGYHIIKLVDKKSENVD-VAQAKEYVKSLLQKNKFNDYIKELKEKAKIT 330 Query: 618 VHDNLI 623 + L+ Sbjct: 331 KDEELL 336 >gi|218897287|ref|YP_002445698.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842] gi|228900906|ref|ZP_04065121.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222] gi|218542209|gb|ACK94603.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842] gi|228858832|gb|EEN03277.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222] Length = 293 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L ++ ++ K Sbjct: 235 E--LKPFDEVKDKIRKDLEQQRLEDTTGKWKQQVVNDLLKDANIKVNNKEFKDT 286 Score = 44.6 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDL 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLEDTTGKWKQQVVNDLLKD 273 >gi|291614457|ref|YP_003524614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] gi|291584569|gb|ADE12227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans lithotrophicus ES-1] Length = 261 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 99/232 (42%), Gaps = 9/232 (3%) Query: 168 FVGGMRPSNLLLD---QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 V G+ +D + + S ++ + + + S A + +K D Sbjct: 30 IVNGVSIPQARVDIRIKVAAQQGQPDSPEFRKVIRDDLINLEVISQAAVKNGLDKQPDVA 89 Query: 225 RAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + E R S + V + K I +D LQ EYE K + + E + + ++ + EA Sbjct: 90 QQLELARQSVLAGAFVQDYAKSHPIGDDVLQKEYEALKARVGNKEYK-LSHILVGTEDEA 148 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP 340 + LKKG KF ++A+ Q K + G +P A+++ L KKG+ + Sbjct: 149 KKIAGQLKKGAKFAKIAKAQSKDPGSKNNGGDLGWAVPSNFVQPFAEAVAKL-KKGEVSA 207 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +G+ I + + + +F+E+K ++ +++ +++++ + + Sbjct: 208 PVQTQYGWHIIKLEDTRELKVPTFEEMKPNLEKRLQQQAIQKEIEDMRSKAK 259 >gi|332291258|ref|YP_004429867.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter diaphorus 4H-3-7-5] gi|332169344|gb|AEE18599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter diaphorus 4H-3-7-5] Length = 713 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 90/603 (14%), Positives = 205/603 (33%), Gaps = 77/603 (12%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 L F+ + V S+ + +F + +++ +G ++ RA + + Sbjct: 31 LDSGGFNADKQNRVASINGVNIDREAFASKVEEQTRR----LGANASTTRAVN-----TV 81 Query: 90 LDNLVSGATLDQFIEDIGLEADHGR----VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 + ++ L++ E++G+E R + + F D FS +A Sbjct: 82 WEQEINRVVLEEQYEELGIEVGRDRTQELLKQALQNDTRFQDGDGFFSEGKMQEFIATLK 141 Query: 146 INEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 ++ + ++ ++ + G+ + + A R N + ++ + Sbjct: 142 ESQNPNDYQNWLNFEENLRNQEKQSIYYNLIKAGVGSTLKDGEIAYRLDNNNVDIQFVQV 201 Query: 198 NNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 VP P S + ++ ++K+ Y+ E + I ++ F + EL Sbjct: 202 PYTSVPDEEAPVSKEEIQKYVNEHKEEYKTDETRSIRFVKFSEEASLEDENALKAELSKL 261 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG--S 314 + + A ++L G E+ SDI Sbjct: 262 RNEYTSRNG-----------------ATGVTETLA-GFDKTDRVEDFLLDNSDIPYVNRW 303 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVS---FQEVKK 369 F K+ +P + AD++F+L K G + ++ V +++ P S + K Sbjct: 304 FFKKNLP-ATNADTLFALGKGG-VYGPYKDNNYMNLSRVMDVRKMPDSVKSRHILIDFKG 361 Query: 370 DIANQMR------ITKASEKVKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAG 422 + N R T+ E+ K L + +E+++ F+ Sbjct: 362 AVTNTQRGPVPSSATRTKEEAKNLADSLLSVIKRNSGKFEELAKE------------FSS 409 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR-DRKLEE 481 + + Y+ LF +D + + + E + + + + Sbjct: 410 DKSNSENGGDLDYQNPNLFAEGYRDFIVDNKTGSVGIAETNFGYHVIEITDQKNLQDVIK 469 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-- 539 V T VK+ + KT + + + E + + +F+++ G ++ +I MD Sbjct: 470 VATVVKEIVPSDKTISSIYNTTQKF--ELAAQDGDFQEVATENGYTVRPVQRIRAMDENL 527 Query: 540 ENKFFGYDGISQVF--SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597 + + F V +K FP+ NG Y+V +VT + + + +T + Sbjct: 528 PGEGAQRSIVQWAFEEEVSVGDIKRFPVNNG--YIVAQVTRRTPKGTERVEDVSTQVTPI 585 Query: 598 MNK 600 + Sbjct: 586 LRN 588 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 11/129 (8%) Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFS 331 + N K+A L G ++A+ Q +++ S S + I + + + F Sbjct: 585 ILRNMKKAAIIKDKL-SGATLAEMAQSQSQTVKTASAISMNAPTIAGAGNEPKVVGAAFG 643 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----VSFQEVKKDIANQMRITKASEKVKED 387 L K+G+ + I GS G + V+ I + SF + A +K +KE Sbjct: 644 L-KEGEISDPIEGSRGVYVVQVTKITEAPALENYASFATQEAQKARVAVSSKVLNALKEA 702 Query: 388 YKRLEEFLA 396 + +E+ A Sbjct: 703 AE-IEDNRA 710 >gi|253575648|ref|ZP_04852984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844986|gb|EES72998.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. oral taxon 786 str. D14] Length = 398 Score = 106 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 104/266 (39%), Gaps = 23/266 (8%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVLTQWFEKYK 221 V G + L ++ E + I ++N ++A + E YK Sbjct: 134 VATVNGVEITKDRLYEELAANGGEQALTNLINQELVNQEAAKNNITITDADVDAEIETYK 193 Query: 222 DNYRAPEY----------------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + E K++ L E +I +++++++ +E K+ + Sbjct: 194 TQFGSEEALNQALEQYGMTMDDLLKQVEMELKLTKLLEPQINVTDEQVKETFETYKDSFN 253 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPD 322 +PE ++ ++EA + + LK+G F +LA+ + + G F + Sbjct: 254 TPEQVRTSVILVATEEEAKDIVKQLKEGADFAELAKSKSLDTATKDQGGDTDFFARGEME 313 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++ ++ F LAK G+ + + S GY + V++ K + T + +E K +I + + S Sbjct: 314 EAVEEAAFKLAK-GEISEPVKTSEGYQVIKVTDKKEAHTATLEEKKDEIRKSLISQQVSS 372 Query: 383 KVKEDYKRLEEFLALGTSMDEISRRE 408 + + + + + + E Sbjct: 373 MSGAWLEDVRSKAKITNTFTDAAAAE 398 >gi|225628141|ref|ZP_03786176.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo] gi|225616966|gb|EEH14013.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo] Length = 381 Score = 106 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 137 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 192 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 193 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 252 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 253 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 311 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 312 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 371 Query: 409 KIVSIDLPL 417 D P Sbjct: 372 DASEDDAPQ 380 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 204 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 260 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 261 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 320 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 321 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 358 >gi|39995469|ref|NP_951420.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Geobacter sulfurreducens PCA] gi|39982232|gb|AAR33693.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA] gi|307634691|gb|ADI83192.2| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter sulfurreducens KN400] Length = 297 Score = 106 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 21/183 (11%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKG 293 +++S+ EL+A Y+++ + + PE V + + + + + LKKG Sbjct: 117 VKVSDAELRAYYQEHAKDFVMPEQAIVRHIFIGFTDAADSQAKAAAKTKTEGVLERLKKG 176 Query: 294 KKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +A E + + LG+ + ++F+L K G+ + ++ FGY Sbjct: 177 EDFAAVAAEASEDIESAKEGGLLGAITPGQTNSEEFEKAVFAL-KAGEMSGLVESPFGYH 235 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I V K + F EVK + ++++ +K++E + +A T ++ + EK Sbjct: 236 IVKVDERKEKRALPFDEVKDALRSKLQGEAEQKKLREFV----DEVAKQTGLELPASEEK 291 Query: 410 IVS 412 Sbjct: 292 PSG 294 Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 7/123 (5%) Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + + E L G ++ G G+ E+ VF Sbjct: 165 KTEGVLERLKKGEDFAAVAAEASEDIESAKEGGLLGAITPGQT-----NSEEFEKAVFAL 219 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + Y V++ E R +EV ++ + +++ +++ Sbjct: 220 KAGEMSGLVES--PFGYHIVKVDERKEKRALPFDEVKDALRSKLQGEAEQKKLREFVDEV 277 Query: 507 VLE 509 + Sbjct: 278 AKQ 280 >gi|83942078|ref|ZP_00954540.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36] gi|83847898|gb|EAP85773.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36] Length = 292 Score = 106 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 73/165 (44%), Gaps = 5/165 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK +++ +ELQA Y++ E + ++ ++EA + L +G F +LA Sbjct: 119 EKAMAQDVTEEELQAAYDEAYADAEPTEEFSASHILVETEEEAQAVKKELDEGADFAELA 178 Query: 301 EEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +E+ S +LG F + + ++ L + G + + FG+ + + + + Sbjct: 179 KEKSTGPSGPAGGTLGWFGPGMMV-PAFETAVAEL-EVGAVSEPVETQFGWHVIKLDDKR 236 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++VK ++ Q+R KA +++ + + + ++D Sbjct: 237 QKEAPKLEDVKDELETQVRQVKAQTLIEKTTEAADVDRSAADTID 281 >gi|259417083|ref|ZP_05741002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp. TrichCH4B] gi|259345989|gb|EEW57803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp. TrichCH4B] Length = 283 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 65/176 (36%), Gaps = 12/176 (6%) Query: 226 APEYKRISYILFDVHEKEKKIEIS-------NDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 PEY R+S + + S D ++ Y+ + ++ Sbjct: 87 TPEYVRLSVEHEERSLLASDVIESVMEDAQTEDAIRDAYDARYSSDDGGDEFNASHILLE 146 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKK 335 ++++A + L G F LA+E S LG F + ++ + + Sbjct: 147 SEEDAVSIKEQLDAGADFAALAKESSTGPSGPNGGELGWFENGRMV-PEFEAAVAEM-RP 204 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ + + FG+ I +++ + +++V+++I ++ +++ + Sbjct: 205 GEVSEPVQTQFGWHIIKLNDRRKLEAPDYEDVREEIGLELAQQAVEDRINQLTASA 260 >gi|88801328|ref|ZP_01116856.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P] gi|88781986|gb|EAR13163.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P] Length = 707 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 101/630 (16%), Positives = 207/630 (32%), Gaps = 66/630 (10%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 L IR+ R+ I + + F++ FS S + V V + + F + Sbjct: 4 LSKIRE--RSMFLIIIIGLALFAFVLDPSTLGDFFSSSKVNEVGQVNGEAISRQEFAEAV 61 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119 Q + + + DN++ +ED G+ VW EI Sbjct: 62 DQYKQN---------SRSEVSEMQAANAVWDNILRKKIYKNQLEDAGISVGEQDVWSEIL 112 Query: 120 -----ARSPLFHGKDNKFSHDVFVSRLAREGINEKE-------YIDHYTKMLSRTDVVGM 167 +P F + F F LA N + Y+ + + Sbjct: 113 KVPSVQDNPQFQNEAGLFDELKFKQFLADTKENNQSLWSAWSNYMGQIKENTETNTYNSL 172 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226 G+ S + S D++ ++ + + + + + + ++ ++A Sbjct: 173 VTAGLGASLKEGEMEYVIENTKLSGDFVYVSYASIADSLVSIKRSEVAAYIKANENEFKA 232 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + ISY+ FD+ + + ++ V L+ +E Sbjct: 233 VSTRDISYVKFDIKATAE----DEEAIKQ---------------KVGSLIGDASDRNNEV 273 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K + G L+ + ++A+ IFS +GD Sbjct: 274 IVGFKNATDDKVFLVDNGSDLNLDE--DYKFNASISQAVANDIFS-GNEGDVFGPYKDQ- 329 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 GY +S I+ + V+ + + + + +V + EE S+ + Sbjct: 330 GY--FKISKIRAVTKMP-DSVRASHILIPFLGSQRGTAEVSRTKAQAEEL---ADSILRV 383 Query: 405 SRR--EKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-QLLFRVFGKDDPLSKDHTVALPDG 461 +R K S+ L G KG ++ Y FR + + V P G Sbjct: 384 VKRSDSKFASLAKSLSSDTGSAAKGGDLDWFNYARMTPAFRDYAFTNSKGAVGVVETPFG 443 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 Y ++I ++ +K+ ++ T K + T + KA Q L SK ++ + Sbjct: 444 -YHVIRIDDTK--NTQKVLKLSTYASKIIPSEATENDFFQKAEQFALAVSKT-TDYTALA 499 Query: 522 KNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 K +L + +D G + +S F G ++ + SYVV VT+ Sbjct: 500 KENNYNLRAAVGLEVLDENVPGLGNERQIVSWAFKGDSKIGSFNRFDLTGSYVVAVVTSK 559 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 + +K ++ + ++ + ++I+ Sbjct: 560 TEKGLMSVEKALNTVRPILLNEKKAALISA 589 >gi|228952655|ref|ZP_04114731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079483|ref|ZP_04212023.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2] gi|229178680|ref|ZP_04306044.1| Foldase protein prsA 1 [Bacillus cereus 172560W] gi|228604838|gb|EEK62295.1| Foldase protein prsA 1 [Bacillus cereus 172560W] gi|228703853|gb|EEL56299.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2] gi|228807121|gb|EEM53664.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 293 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|254485739|ref|ZP_05098944.1| ppic-type ppiase domain protein [Roseobacter sp. GAI101] gi|214042608|gb|EEB83246.1| ppic-type ppiase domain protein [Roseobacter sp. GAI101] Length = 282 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 7/178 (3%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E +++ +IS ++L A YE+ E ++ +++A Sbjct: 98 ERRQLIAGEVIEKAMA--ADISAEDLAAAYEEEYGSAEPTEEFNASHILVETEEDALAVK 155 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + G F + A+E+ S SLG F + + ++ L + G + + Sbjct: 156 AEIDGGADFAETAKEKSTGPSGPSGGSLGWFGPGMMV-PAFETAVQDL-EVGAVSMPVET 213 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 FG+ I + + + + + VK+++ Q+R KA EK+ E + + ++D Sbjct: 214 QFGWHIIKLEDKRLKDAPALESVKEELELQLRQVKAQEKITEMTDAADVDRSAADAID 271 >gi|160947418|ref|ZP_02094585.1| hypothetical protein PEPMIC_01352 [Parvimonas micra ATCC 33270] gi|158446552|gb|EDP23547.1| hypothetical protein PEPMIC_01352 [Parvimonas micra ATCC 33270] Length = 247 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E R ++E I++S++E++ YE+NK + S + ++ ++++ADE Sbjct: 73 EITRSILAKHFLNELFGDIKVSDEEIKKYYEENKNLFKSRYTFKAKHILVESEEKADELK 132 Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + + G++F +LA++ S LG FS+ + + ++ A+ G+ T + Sbjct: 133 KLCENGEEFEELAKKYSMCPSKEVGGDLGEFSQGQMV-LEFENACID-ARVGEITKPVKT 190 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FGY + + + + + VK +I + K + L Sbjct: 191 QFGYHLIMLESKTEPEQLDLETVKDEIRKNIVKAKEQIAYVKKMDAL 237 >gi|253996058|ref|YP_003048122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] gi|253982737|gb|ACT47595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera mobilis JLW8] Length = 262 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 68/160 (42%), Gaps = 6/160 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + KK +S+ + +A YEK K Y E + ++ + EA + L KG F Sbjct: 100 MFLQDYVKKHPVSDADTKAAYEKYKTAYGDKEY-SARHILVKTEAEAKDIIAQLGKGGDF 158 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 ++A+E+ LG FS + +D + +L K + FG+ + Sbjct: 159 AKIAKEKSLDPGSKEKGGDLGWFSPATMVKP-FSDVVANLQKGATSASPVQTQFGWHVIK 217 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + +P+ + ++++K I ++ + + + + + Sbjct: 218 LVDTRPAQPLPYEKLKDGIQKNLQQHNLEKLMSDLRAKAK 257 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS----- 554 ++A ++ + K G +F I K + + +F + + FS Sbjct: 142 EAEAKDIIAQLGKGG-DFAKIAKEKSLDPGSKE----KGGDLGWFSPATMVKPFSDVVAN 196 Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 P++ + V K+ +++ +K + + + + L+ +++ L+++ Sbjct: 197 LQKGATSASPVQTQFGWHVIKLVDTRPAQPLPYEKLKDGIQKNLQQHNLEKLMSDLRAKA 256 Query: 615 SVTV 618 + + Sbjct: 257 KIDI 260 >gi|228958588|ref|ZP_04120307.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801099|gb|EEM47997.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 293 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKTLLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKTLLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|218233359|ref|YP_002367018.1| peptidylprolyl isomerase [Bacillus cereus B4264] gi|296502878|ref|YP_003664578.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] gi|218161316|gb|ACK61308.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus B4264] gi|296323930|gb|ADH06858.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] Length = 283 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 225 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 44 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 130 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 131 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 191 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 240 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 145 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 264 Query: 615 SVTVHDN 621 + V++ Sbjct: 265 DIKVNNK 271 >gi|90422049|ref|YP_530419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] gi|90104063|gb|ABD86100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] Length = 310 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 5/155 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E K ++ ++ Y+ ++ ++ + EA LKKG F +LA Sbjct: 120 AVEGKAATTDAAMKKVYDDAAKQITGETEVRARHILVETEDEAKAIEDELKKGADFAELA 179 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +++ K LG F+K+ + + F+L + G + + FG+ I V + Sbjct: 180 KKKSKDPGASDGGDLGFFTKDQMV-PEFSSVAFAL-EPGKISDPVKSQFGWHIIKVEEKR 237 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK I + ++ V + + + Sbjct: 238 NRKAPDFAQVKAQIETYVTRKAQADYVTKLRETAK 272 >gi|229121887|ref|ZP_04251106.1| Foldase protein prsA 1 [Bacillus cereus 95/8201] gi|228661536|gb|EEL17157.1| Foldase protein prsA 1 [Bacillus cereus 95/8201] Length = 288 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ K DN++ E + + + +I Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKVKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 40.7 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|281357340|ref|ZP_06243829.1| hypothetical protein Vvad_PD2435 [Victivallis vadensis ATCC BAA-548] gi|281316371|gb|EFB00396.1| hypothetical protein Vvad_PD2435 [Victivallis vadensis ATCC BAA-548] Length = 540 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 87/536 (16%), Positives = 179/536 (33%), Gaps = 57/536 (10%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIW---GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 K SR W+ F +V+ V FL + G FS S + V + Sbjct: 10 FHKHSR-WLFGGFTIVIIVSFLGFLTPGQFGCDFSDPESHEFGVAFGKPVTYRDL----- 63 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 +E+G Q I V++ R + + NL L Q E +G+ A V + + Sbjct: 64 REMGRNVQIINHVMSGVSNREIDV-----QNLFGPYCLLQAAERMGIVASDKEVAEMLRQ 118 Query: 122 SPLFHGKDNKFSHDVFVSRLA---REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 P KD KFS +++ LA + GI+ +E+ + M+ + G+ + Sbjct: 119 MPTLQ-KDGKFSMELYNEMLAGYQKAGISAEEFNNAIRMMVMLNKLDREIAAGVVVTPGE 177 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 ++ R + + + N + ++FEK + Y + F Sbjct: 178 VESFYRRLYGKYRIKGALFNADTFKDKVPRDARKMQEFFEKNRSEYVIQAKLSALVVAFP 237 Query: 239 VHEK--EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-------------- 282 E + EL+ Y+ N + + +T E + + Sbjct: 238 YAGFKAEAAKAATAAELEKFYKANTALFDDKDGKTQEYAKVAGEVKKKFIEARSRDLATR 297 Query: 283 -----ADEAFQSLKKGKK----FIQLAEEQGKSLSDISLGSFSKEYIPDVS----LADSI 329 A A++++ + + F +LA + + + + ++ + Sbjct: 298 RAYDFASAAYEAVGEAENKVEVFRELARKGKLDIIETGRFDIDATVVGKINSPVLIRQLG 357 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 +L T + G + + EV K + + ++ + +E K Sbjct: 358 AALNAGNPVTNAVPGDDAAYVGFTLEQIAARPAMLNEVAKQLNDDYVAAESLKLAREAAK 417 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 + + ++ R + ++ V+ V A Y Q R+ P Sbjct: 418 AELDRI---KALKPAERAKAFAALKNCKVEEFEASVSQMPPAGFEYAMQAAVRL----HP 470 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 V P+G+ + ++ E IPA ++ E ++ K E+++ A + Sbjct: 471 GELTPVVDTPNGAAIA-ELLERIPADMKEFEAKKALYTGIFRQRK--EQMARLAFE 523 >gi|218297017|ref|ZP_03497694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus Y51MC23] gi|218242572|gb|EED09109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus Y51MC23] Length = 603 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 86/656 (13%), Positives = 190/656 (28%), Gaps = 144/656 (21%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG- 72 I L + F+ + L + + V + + ++ +L + Sbjct: 9 VTILFGFLALAFV---VGAILLFTPQAGQEAK--GKPVLWVNGKAVYELDLLRLQGNDPL 63 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + N + V +D L+ ++ L Q + V E+ R + Sbjct: 64 YAANPQGLLKVLVDTHFLEQVILTEALKQDAAR--IRVGSAEVRKEVDRI---REQYGLR 118 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + L + G + + L + Sbjct: 119 DKKAYEQFLNQIGYTDAQLRAEIKAQLQIQKRLEQVRSS--------------------- 157 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 A P+ + +FE ++++Y+ Sbjct: 158 -------------AKPTPEEVRFYFEVHQEDYKTEPRV---------------------- 182 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--SLSDI 310 Q+V ++K A+E K G+ F LA++ K + Sbjct: 183 ------------------QARQIVVDDKKVAEEVLAKAKAGEDFTALAKKYSKVGAEQGG 224 Query: 311 SLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +LG+ E P +A+++F+L G I Y I V P Sbjct: 225 ALGAAPGESAPKPVTKVVFPEKVAEAVFALKGPG-LVGPIEAGGRYYIVKVEAYLPPKVP 283 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEF-----------LALGTSMDEISRREKIV 411 +F+EVK + KA+ ++ + L + + ++ ++ RE ++ Sbjct: 284 TFEEVKDQVEKDAGDAKANGALEAYLEDLRKKAQVRFAEGVGYVYKNPAVATVNEREILL 343 Query: 412 SIDLPLVDFAGKDVK-----GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP------- 459 S L V + E+A + Q L R+ ++ + P Sbjct: 344 SQVLQPVFSNQQTAALIQQGLGELAVQFFLPQTLERLVDQEILVGAAKKSGKPFIGSKDE 403 Query: 460 -DGSYMWVQIKESIPARDRKLEEVLT-----------DVKKDWKTVKTAEEVSSKANQLV 507 +Y+ + ++ E + V EE +KA + Sbjct: 404 VAQAYLLYETRDVTA----TEAEARRFYAENPAFFTIPASAEVVGVVFQEEAKAKAFR-- 457 Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF-SGPVEMVKCFPI 565 E + + + + + K G ++ +N + + F G + V Sbjct: 458 -EAALKASDLQALAKAHGGTVTEYGAVNPGQLPAVLDRLVFKVKEAFPKGSLGEVSEVVK 516 Query: 566 ENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++ V + N K ++ K++ + + ++ ++I L+ + V Sbjct: 517 LEDGTFTVLLIKNRKPEELKPFEAVKEEALEGVINRKRQEKAQALIQKLRQEAKVE 572 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 72/192 (37%), Gaps = 8/192 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + + + E + Y +N + P V +VF + +A ++ K LA+ Sbjct: 414 RDVTATEAEARRFYAENPAFFTIPASAEVVGVVFQEEAKAKAFREAALKASDLQALAKAH 473 Query: 304 GKSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357 G +++ G+ + +P V F G+ + V+ G + + + N K Sbjct: 474 GGTVT--EYGAVNPGQLPAVLDRLVFKVKEAFPKGSLGEVSEVVKLEDGTFTVLLIKNRK 531 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 P F+ VK++ + K EK + ++L + + + ++ + + P Sbjct: 532 PEELKPFEAVKEEALEGVINRKRQEKAQALIQKLRQEAKVENRLAQVLAELTPKTEEKPK 591 Query: 418 VDFAGKDVKGKE 429 + ++ K Sbjct: 592 EEAPKEEAPAKP 603 Score = 45.8 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 6/138 (4%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + K E + + +++ + V+ G+ A + + F Sbjct: 450 EAKAKAFREAALKASDLQALAKAHGGTVTEYGAVN------PGQLPAVLDRLVFKVKEAF 503 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 K V L DG++ + IK P + E V + + K E+ + Sbjct: 504 PKGSLGEVSEVVKLEDGTFTVLLIKNRKPEELKPFEAVKEEALEGVINRKRQEKAQALIQ 563 Query: 505 QLVLEYSKEGKNFRDIGK 522 +L E E + + + + Sbjct: 564 KLRQEAKVENRLAQVLAE 581 >gi|170763930|ref|ZP_02635346.2| putative foldase protein PrsA [Clostridium perfringens B str. ATCC 3626] gi|170764086|ref|ZP_02631748.2| putative foldase protein PrsA [Clostridium perfringens E str. JGS1987] gi|170662690|gb|EDT15373.1| putative foldase protein PrsA [Clostridium perfringens E str. JGS1987] gi|170712067|gb|EDT24249.1| putative foldase protein PrsA [Clostridium perfringens B str. ATCC 3626] Length = 326 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 104/356 (29%), Gaps = 73/356 (20%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95 +TV +V +K+ + K + + G + + + + ++ LV+ Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L + +G++ + ++ F D F L EG E + D Sbjct: 78 DKVLGIEADKLGIKPSEEEIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTFKDVI 134 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + V + ++ + Sbjct: 135 KNQVINQAVQDYII----------------------------------KDVKVTDEDAQK 160 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + A + ++ L + +E Q Y++ + + Sbjct: 161 YYDENKQQFVAKDSGVLTKHLLFEN---------EEEAQKAYDEIQSGKTTF-------- 203 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 ++ F + K + K +LG E V K+ Sbjct: 204 --------NDLFTKYENNKS-------ENKKPIAENLGVVPAENSGLVQEFVDGLKPLKE 248 Query: 336 GDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + I FGY I + + F EVK I ++ K SEK K D + Sbjct: 249 GEISKPIKTQFGYHIIQAGATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQ 304 >gi|124516598|gb|EAY58106.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum rubarum] Length = 324 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 88/214 (41%), Gaps = 16/214 (7%) Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY------KRISYILFDVHEK 242 +V L + + + + + PE ++ ++ Sbjct: 90 RETVQDFFLEEEGKKRGIKIRPNEIKDYLKNH---FPQPEKSLEPFARKALFLQKTEEAL 146 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 +IS ++ Y+ ++ + V+ +V Q+EA+ +L KG F +LA+ Sbjct: 147 APFPDISISTERSFYKNHQNLFRISRQAIVDHIVVAKQEEAESIRDALIKGSSFARLAKL 206 Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + ++ S + + + +P D++F++ K G+ TPV+ +GY + + P Sbjct: 207 ESLGMEASSGGRMKPYPRGTMPPP--FDTVFTM-KPGEITPVLSSPYGYHLFRLEKFIPE 263 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKE-DYKRLE 392 T+SF VK I ++ K + ++E ++L+ Sbjct: 264 HTLSFSMVKNWIKKKLTRVKRQKVLQEWLAQKLQ 297 Score = 41.5 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 24/198 (12%) Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK---DI 371 F + A L K + +I S SF + + I Sbjct: 122 FPQPEKSLEPFARKALFLQKTEEALAPFP-----------DISISTERSFYKNHQNLFRI 170 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + Q + +E+ + + + L G+S ++ K+ S+ + + Sbjct: 171 SRQAIVDHIVVAKQEEAESIRDALIKGSSFARLA---KLESLGMEASSGGRMKPYPRGTM 227 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 P+ + LS + Y ++++ IP V +KK Sbjct: 228 PPPFDTVFTMKPGEITPVLSSPY-------GYHLFRLEKFIPEHTLSFSMVKNWIKKKLT 280 Query: 492 TVKTAEEVSSKANQLVLE 509 VK + + Q + + Sbjct: 281 RVKRQKVLQEWLAQKLQK 298 >gi|319407575|emb|CBI81225.1| peptidyl-prolyl cis-trans isomerase [Bartonella sp. 1-1C] Length = 308 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 62/149 (41%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I++ +++A Y+K + ++ ++EA++ + L KG+ F ++A++ Sbjct: 128 KIADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEKVIKRLHKGENFEEIAKKDSTD 187 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG FS+ + ++ F+L + FG+ + + + + Sbjct: 188 GSSAVGGDLGYFSRGQMVKP-FEEAAFNLKVGEYTKKPVESPFGWHVIKIEDRRLKQPPV 246 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F +VK + Q+ + + ++ Sbjct: 247 FDDVKDVLRTQLIREHYQTLITDLRGKIN 275 >gi|228945944|ref|ZP_04108286.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813692|gb|EEM59971.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 288 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDIKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 39.2 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 ++K + +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DIKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|217963619|ref|YP_002349297.1| foldase protein PrsA [Listeria monocytogenes HCC23] gi|217332889|gb|ACK38683.1| foldase protein PrsA [Listeria monocytogenes HCC23] Length = 293 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266 >gi|290893167|ref|ZP_06556155.1| rotamase [Listeria monocytogenes FSL J2-071] gi|290557329|gb|EFD90855.1| rotamase [Listeria monocytogenes FSL J2-071] Length = 293 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 234 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 266 >gi|257066380|ref|YP_003152636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] gi|256798260|gb|ACV28915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus prevotii DSM 20548] Length = 249 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 9/162 (5%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H+ +++ I++DE++ YE+NKE P + ++ + + A++ ++KG F Sbjct: 86 MHKIFEEVNINDDEIKKYYEENKETINPPILYEASHILVKDLETAEKVRGEIEKGLSFED 145 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A++ S SLG F K + D+I + G+ + + FGY + + Sbjct: 146 AAKKYSIDPSKENGGSLGKFPKGVMVKEFQEGLDAI----EVGEISAPVKSQFGYHLIKL 201 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 +N + T F+E+K + ++ + K E E ++++ + Sbjct: 202 TNKENVETPKFEEIKSQVGQRLIMAKRQEAYLEKLGKIKKDV 243 >gi|229160113|ref|ZP_04288114.1| Foldase protein prsA 1 [Bacillus cereus R309803] gi|228623324|gb|EEK80149.1| Foldase protein prsA 1 [Bacillus cereus R309803] Length = 287 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF + K + Sbjct: 178 DLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFDQSKDE 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKEIVQKKAQD 246 Score = 37.3 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 55/139 (39%), Gaps = 9/139 (6%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + ++ Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227 Query: 479 LEEVLTDVKKDWKTVKTAE 497 ++ ++KK+ K + Sbjct: 228 FDQSKDEIKKEIVQKKAQD 246 >gi|228914927|ref|ZP_04078532.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927396|ref|ZP_04090453.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933628|ref|ZP_04096478.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826088|gb|EEM71871.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832292|gb|EEM77872.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844723|gb|EEM89769.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 288 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 40.7 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|261856056|ref|YP_003263339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] gi|261836525|gb|ACX96292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus neapolitanus c2] Length = 325 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 74/184 (40%), Gaps = 6/184 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + K+++++ ELQ EY + + Y ++ ++EAD + L G F Q Sbjct: 139 LSDYLSKMKVTDAELQPEYNQFVKGYPKTTQYKAAHILVKTKEEADAIIKQLDSGTPFDQ 198 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+E+ + LG F + + + ++ L K + FG+ + + Sbjct: 199 LAKEKSQDPGSAKQGGELGWFDADQMV-PEFSAAVEKLKKGEITQQPVKSQFGWHVIKLE 257 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSI 413 + + + +F E+K + Q R + +K+ + + +A+ ++ S Sbjct: 258 DTRLAQPPTFAELKPQLETQYRRAAIEDLIKKLRTKAKINIMAVPATLQTAPAEASKPSE 317 Query: 414 DLPL 417 + Sbjct: 318 EAAP 321 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 46/133 (34%), Gaps = 2/133 (1%) Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFG 545 +K + +A+ ++ + G F + K + Q + + Sbjct: 167 TTQYKAAHILVKTKEEADAIIKQLD-SGTPFDQLAKEKSQDPGSAKQGGELGWFDADQMV 225 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605 + + V + P+++ + V K+ ++++ + L + ++ Sbjct: 226 PEFSAAVEKLKKGEITQQPVKSQFGWHVIKLEDTRLAQPPTFAELKPQLETQYRRAAIED 285 Query: 606 VIAYLKSQYSVTV 618 +I L+++ + + Sbjct: 286 LIKKLRTKAKINI 298 >gi|330991867|ref|ZP_08315816.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1] gi|329760888|gb|EGG77383.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1] Length = 305 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 6/158 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ ++ Y++N E ++ ++ EA++ + LK G F QLA + Sbjct: 136 TLTDEAVKTYYDQNYANKPGAEEVHARHILVKSEAEANDIIKQLKAGADFGQLATKLSTD 195 Query: 307 LS-----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 LG F K + + D+ ++ +H +G+ + V + + T Sbjct: 196 PGSAKQNGGDLGWFKKGDML-PTFWDAASAMQPNSFSQTPVHTQYGWHVIQVLGKRTAPT 254 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + ++ I ++ + V +++ Sbjct: 255 PTLDAMRDQIRQKLIQEGVQKAVSNALSQVKVVRFGPD 292 >gi|229184548|ref|ZP_04311751.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1] gi|228598959|gb|EEK56576.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1] Length = 288 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 119 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 40.7 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268 Score = 38.4 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|315924379|ref|ZP_07920601.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622258|gb|EFV02217.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 266 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 76/181 (41%), Gaps = 10/181 (5%) Query: 218 EKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 E+Y+ + E SY++ +++ DEL+ Y +N++K+ +P+ ++ Sbjct: 79 EEYQKEFAEMTEKFLKSYMI---SHFMSSVKVEEDELRQYYNENQDKFIAPDSVRCSHIL 135 Query: 277 FPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331 P +++A + + + GK F Q A+ S LG F K + + FS Sbjct: 136 VPAKQQAIDIIEEIDTGGKTFEQAAKAYSADASNKDRGGDLGYFHKGQMV-AEFEMAAFS 194 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L + + FG+ I ++ K + V ++ + + + K + + + + L Sbjct: 195 LNPGEMTSAPVQTQFGWHIIQCTDHKTNEIVPYEAARDSLHRFLLGQKQNRRYVAEAEDL 254 Query: 392 E 392 + Sbjct: 255 K 255 >gi|296117344|ref|ZP_06835934.1| peptidylprolyl isomerase [Gluconacetobacter hansenii ATCC 23769] gi|295976110|gb|EFG82898.1| peptidylprolyl isomerase [Gluconacetobacter hansenii ATCC 23769] Length = 308 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 6/156 (3%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 ++D ++A Y+KN E ++ P +++A++ + LK G F LA + K Sbjct: 137 TDDAVKAYYDKNYANKPGAEEIHARHILVPTEEQANDIIKQLKGGANFADLATKLSKDPG 196 Query: 309 -----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F K + + D+ +L +H +G+ + V + + T + Sbjct: 197 SAKQNGGDLGWFKKGDML-PAFWDAASTLQPNSFSQTPVHTQYGWHVIQVLGKRTAATPT 255 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 ++ I ++ + V +++ Sbjct: 256 LDSMRDQIRQKLIQEGVQKAVSSAVGQVKIVRYGPD 291 >gi|206971674|ref|ZP_03232624.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134] gi|206733659|gb|EDZ50831.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134] Length = 283 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 225 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276 Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 44 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 130 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 131 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 191 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 240 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263 Score = 38.8 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 145 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 264 Query: 615 SVTVHDN 621 + V++ Sbjct: 265 DIKVNNK 271 >gi|229028826|ref|ZP_04184927.1| Foldase protein prsA 1 [Bacillus cereus AH1271] gi|228732397|gb|EEL83278.1| Foldase protein prsA 1 [Bacillus cereus AH1271] Length = 288 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 68 KVDDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 127 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 128 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 178 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG FS + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 179 DLGFFSSGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKDD 235 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 236 IKKEIVQKKAQD 247 Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 9/139 (6%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K + +++ + K + K+++E L G S +E++++ + Sbjct: 118 EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 177 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + ++ Sbjct: 178 GDLGFFSSGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 228 Query: 479 LEEVLTDVKKDWKTVKTAE 497 E+ D+KK+ K + Sbjct: 229 FEQSKDDIKKEIVQKKAQD 247 >gi|118588533|ref|ZP_01545942.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614] gi|118439239|gb|EAV45871.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614] Length = 296 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 E++++E+QA Y+K + E ++ ++ EA+ L G F +LA E+ Sbjct: 116 EVTDEEVQAAYDKEFADFEGAEEINARHILVKDKAEAEAIIAELDGGADFAELAREKSTG 175 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S SLG F+K + + F+L + FG+ + + + + + Sbjct: 176 PSGPNGGSLGYFAKGQMV-PPFEAAAFALEPGTYTKEPVETQFGWHVIKLEDKRRQEKPA 234 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 F+EV + Q+ + ++ E ++ Sbjct: 235 FEEVANGLRQQLMRERYDARMAELKDQV 262 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 7/159 (4%) Query: 469 KESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 +E A D++ E ++ VK ++A ++ E G +F ++ + Sbjct: 120 EEVQAAYDKEFADFEGAEEINARHILVKD----KAEAEAIIAELD-GGADFAELAREKST 174 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586 N + + F+ P+E + V K+ + + Sbjct: 175 GPSGPNGGSLGYFAKGQMVPPFEAAAFALEPGTYTKEPVETQFGWHVIKLEDKRRQEKPA 234 Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 ++ + L Q + ++ D+ +A LK Q +V + D + + Sbjct: 235 FEEVANGLRQQLMRERYDARMAELKDQVAVEIVDESLAK 273 >gi|315283321|ref|ZP_07871537.1| foldase protein PrsA [Listeria marthii FSL S4-120] gi|313613042|gb|EFR86968.1| foldase protein PrsA [Listeria marthii FSL S4-120] Length = 292 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 26/208 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y + E + Sbjct: 62 LSDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNMLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + + P D + + ++L KGD + + +GY I + P+ +F Sbjct: 176 ATKENGGKLEPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDE--PATKTTF 233 Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKRL 391 + KK + ++ +E +++ K++ Sbjct: 234 DKDKKAVKESYLQSQLTTENMQKTLKKV 261 >gi|291515888|emb|CBK65098.1| PPIC-type PPIASE domain [Alistipes shahii WAL 8301] Length = 676 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 85/695 (12%), Positives = 209/695 (30%), Gaps = 108/695 (15%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L +R V I + + + F++ L + V + +K+ +S + + ++ Sbjct: 4 LNTLRTKF-GIVLSIIIALALLAFILS-LKTEMGFSGNDPRVGVIDGEKINYSEYYDQYE 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH-GRVWGEIA 120 + + S+ +S L L++ L + +GL R+ Sbjct: 62 TIKSQNNMQ-----ESDEQQSAMLANAAWQALIAKHVLTPGFDRMGLRVTEPERLAMVSG 116 Query: 121 RSP------LFHGK-DNKFSHDVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGM 167 + P F ++S LA+ N + + + G+ Sbjct: 117 QHPSQAFYNAFADPRTGEYSVAAISQFLAQAETNPEAANAWAQLNEQARLEREVQKYFGL 176 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226 GG+ ++L + + ++ S + VP + S+ + ++ +K+ ++ Sbjct: 177 VKGGVYVNSLEVARGVEAANKSFSGKWAGKKFSAVPDSLVKVSSGDVKAYYNSHKNQFKQ 236 Query: 227 PEYKRISYILFDVHEKEKKI-----EISN--------DELQAEYEKNK------------ 261 + ISY++F+V + + ++ +E++ N+ Sbjct: 237 TPSRTISYVVFEVSPTDDDLLALEKSVTEVGREFAAAEEVKTFVRANRNGKIADSYVSAA 296 Query: 262 -------------------------------EKYFSPEIRTVEQLVFP--NQKEADEAFQ 288 + P+ V +V P + AD Sbjct: 297 QLSDEEAKALMAGEMYGPVLKNNEWTMSRALDSKMVPDSVGVRHIVLPYAQEALADSLLT 356 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHGS 345 LKKG F Q A + + G +P + + + A++GD + G Sbjct: 357 VLKKGGDFAQTAARYSVYDATAANGGEV-GVLPFSAFTGEFAAALANARQGDIVKIASGD 415 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + + + S I + + A+ + + + + F+ Sbjct: 416 A----IQLMQVYRADKPSKHVQVATITYPVEASAATRR--DVHNQAGSFMVNAKGSAAAF 469 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 + P V + + + + ++ +G + + Y+ Sbjct: 470 ADAASTAAVTPRVAAIAQG--DRTIRGLEDSREVARWAYGAKE--GDLSAIFNVGKDYVI 525 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + E L +V ++ K K + +V G + +LG Sbjct: 526 ATLTEIDDNEYAPLNKVSAQIRSQLLRDK-------KYDYIVKSL--SGSTLAEQAASLG 576 Query: 526 ASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 + + + + G + + + S + P++ VF+V + K Sbjct: 577 SEVEDFSDVTFGSFYVNGVGMEPRLVGAIASAEKGAL-SAPVKGLSGVYVFEVGDVKTDD 635 Query: 584 VQEKDKFISYLTQMMNKDLLDSV-IAYLKSQYSVT 617 ++ + Q M + + I ++ + Sbjct: 636 -KQTAEGEKVRAQAMAEGMAQQFAIPAIQQMAKIQ 669 >gi|182626803|ref|ZP_02954541.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens D str. JGS1721] gi|177907849|gb|EDT70447.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium perfringens D str. JGS1721] Length = 248 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 99/249 (39%), Gaps = 21/249 (8%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN----------RSVDYIVLNNRHVPAIADPS 209 V+ S+ + + R+ + R V + + A + Sbjct: 1 MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIAFELMSEFAKET 60 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 T+ F+ + + + + + + +++DE +A Y+++KE + E Sbjct: 61 GLDKTEEFKDQLNKF-----AKELLAQMVMKKTLSSVTVTDDEAKAFYQEHKENFVELET 115 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 T + ++ +++EA + + + G F A + S +LGSFSK + Sbjct: 116 VTAKHILVASEEEAKKVEEEIASGSITFEDAANKYSSCPSKEQGGNLGSFSKGMMV-PEF 174 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 ++ F+L + G + + FGY + V + + T +F++VK+ + N + + +K Sbjct: 175 EEAAFNL-ELGVVSAPVKTQFGYHLIKVEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYL 233 Query: 386 EDYKRLEEF 394 E K L E Sbjct: 234 ELIKELREK 242 >gi|229190397|ref|ZP_04317398.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876] gi|228593181|gb|EEK50999.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876] Length = 293 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKRGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E+ K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EEAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.8 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 89/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKRGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ ++I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEEAIKA-----------------------------TVTDKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 38.8 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|303256912|ref|ZP_07342926.1| probable parvulin-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] gi|302860403|gb|EFL83480.1| probable parvulin-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] Length = 261 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 8/154 (5%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ K +S E++A YE+ K + E V ++ +QK A+ + L G F LA Sbjct: 103 DEMAKHPVSEKEIKARYEEEKAALGNKEY-EVSHILVKDQKTAENIEKKLAAGGNFAALA 161 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 +E LG ++ + AD++ ++ KKG+ + + FG+ I V++ Sbjct: 162 KEFSVDTGAKENGGDLGW-NRPAVFVKPFADAVKNM-KKGEISKAPVKTEFGWHIIKVND 219 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 +K ++ VK I + + K + E K Sbjct: 220 VKEVPFPTYDSVKDQIREGLELKKQQNFLNELMK 253 >gi|228921035|ref|ZP_04084370.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838581|gb|EEM83887.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 293 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISSFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.8 bits (102), Expect = 0.094, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISSFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISSFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|330998838|ref|ZP_08322565.1| putative peptidylprolyl isomerase PrsA1 [Parasutterella excrementihominis YIT 11859] gi|329576052|gb|EGG57571.1| putative peptidylprolyl isomerase PrsA1 [Parasutterella excrementihominis YIT 11859] Length = 261 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 8/154 (5%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ K +S E++A YE+ K + E V ++ +QK A+ + L G F LA Sbjct: 103 DEMAKHPVSEKEIKARYEEEKAALGNKEY-EVSHILVKDQKTAENIEKKLAAGGNFAALA 161 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 +E LG ++ + AD++ ++ KKG+ + + FG+ I V++ Sbjct: 162 KEFSVDTGAKENGGDLGW-NRPAVFVKPFADAVKNM-KKGEISKAPVKTEFGWHIIKVND 219 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 +K ++ VK I + + K + E K Sbjct: 220 VKEVPFPTYDSVKDQIREGLELKKQQNFLNELMK 253 >gi|220919569|ref|YP_002494873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957423|gb|ACL67807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 99/346 (28%), Gaps = 71/346 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + ++AR+ L + D +VS Sbjct: 37 DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRR-AFDQVVSDKLF 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +++ +E +V I K N F+ S LA EG + +Y Sbjct: 96 AEKAKELEIEVTEKQVDDAIEGV----KKQNGFTDAQLESALASEGYSMTDYRARIR--- 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R + L V S L +++ Sbjct: 149 ------------------------------RELQNFSLLQYKVAGKIKTSEEDLRNYYQS 178 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + R+ +I E E E R V Sbjct: 179 HPQEFDGEDEVRVRHIFIPFAEGGG--------------AQAEAQARAEGRRV------- 217 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 Q LK G+ F +A+ + LG + I +L D+ F+L K G Sbjct: 218 -------LQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTI-HRTLEDAAFAL-KTG 268 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + ++ G I V + SF++ + +I ++ +A Sbjct: 269 EMSGLVEAGPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAEN 314 >gi|163745064|ref|ZP_02152424.1| PPIC-type PPIASE domain protein [Oceanibulbus indolifex HEL-45] gi|161381882|gb|EDQ06291.1| PPIC-type PPIASE domain protein [Oceanibulbus indolifex HEL-45] Length = 282 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 70/159 (44%), Gaps = 5/159 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK- 305 ++S++ELQA Y+ + + ++ ++EAD L+ G F ++A+E+ Sbjct: 115 DVSDEELQAAYDAQYKDAEPEQEFNASHILVETKEEADAIKAELEGGADFAEVAKEKSTG 174 Query: 306 --SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 SLG F + +++ + + G + + FG+ + ++ + + Sbjct: 175 PSGPGGGSLGWFGPGMMV-PEFEEAVAGM-EAGGVSEPVETQFGWHVIKLNETRTGEAPA 232 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++V++++ Q+R TK ++ + + + +D Sbjct: 233 LEDVREELETQVRQTKVQTAIESLTEAAKVDRSAAEGID 271 >gi|30248886|ref|NP_840956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] gi|81722212|sp|Q82W17|SURA_NITEU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|30138503|emb|CAD84793.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] Length = 448 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 55/418 (13%), Positives = 134/418 (32%), Gaps = 69/418 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + ++ N++ R L+K++L+ L+ Sbjct: 45 DRIVAVVNEEVITQQEINEVLQNTVQQLQRQ-----NTQLPRMEILEKQLLERLILKRIQ 99 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158 Q ++IGL + + R +DN + D F L +EG + + + Sbjct: 100 LQRAKEIGLTVSDNDLDQTLRRI----IQDNHLTMDEFRQVLLQEGTDMNRFREEIRGEI 155 Query: 159 ----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 L +V + L N + V A + Sbjct: 156 LMSRLKEQEVNSRVNVTENEIDNFLQNQANSPAGNEEYRIAHI---LVQISEQMDEAQIE 212 Query: 215 QWFEKYKDNYRAPEY----KRISYILFDVHEKEKK-------------------IEISND 251 ++ + Y + R+S D + + + + Sbjct: 213 ARHKRAETAYESLRQGADFVRVSAEFSDAPDAMQGGELGWRPLGQLGSPFTEMLVNMQPG 272 Query: 252 ELQ------------AEYEKNKEKYFSP--EIRTVEQLVFP-----NQKEA----DEAFQ 288 E+ E+ +++ E + ++ ++++A ++ + Sbjct: 273 EVTPVVRSPVGFHILKLLERRQQEQKVTIIEQTHAQHILIKVSELVSEEDAHQLINQLME 332 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F+ +A+ + S LG S ++ +L G +P + Sbjct: 333 RIHNGADFMDVAKAHSEDASASAGGDLGWVSPGDTV-PEFEQAMNALL-PGQVSPPVRTP 390 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FG+ + V + S VS ++ ++ + + KA V+E ++L + + +++ Sbjct: 391 FGWHLIKVIERR-SQDVSERQQREAARHTIHARKADAIVQEWLQQLRDQAYVEYKVED 447 >gi|196033913|ref|ZP_03101324.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W] gi|195993593|gb|EDX57550.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W] Length = 283 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDIKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274 Score = 38.8 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 ++K + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DIKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|126738446|ref|ZP_01754151.1| PPIC-type PPIASE domain protein [Roseobacter sp. SK209-2-6] gi|126720245|gb|EBA16951.1| PPIC-type PPIASE domain protein [Roseobacter sp. SK209-2-6] Length = 283 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 60/147 (40%), Gaps = 5/147 (3%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 +++ L+A YEK + ++ +++ A + Q L G F LA+E S Sbjct: 117 TDEALRAAYEKKYSSGDGGDEFHASHILVESEETALDIKQELDAGADFAVLAKEYSTGPS 176 Query: 309 D---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG F++ + +++ + + G+ + + FG+ + + + + SF+ Sbjct: 177 GPNGGDLGWFTQGRMV-PEFEEAVLEM-RSGEVSEPVQTQFGWHVIMLKERRKTAAPSFE 234 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392 E + + +++ ++ E Sbjct: 235 EARGQLVQELQNEAIEARISALTSAAE 261 >gi|120612784|ref|YP_972462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120591248|gb|ABM34688.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 299 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQLAEE----Q 303 + Y+ E++ PE V ++ ++ + ++ Q LK G F QLA+E + Sbjct: 126 ARNIYKAKPERFKVPEQVQVRHILIAGKGADSRAQIEKIEQELKGGADFAQLAKERSADK 185 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G + LG F + + F+L K G+ + ++ FGY I + T S Sbjct: 186 GSAAKGGDLGFFEAGKMV-PEFDKAAFALTKPGELSGIVESKFGYHILQLEGRHAPRTRS 244 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSIDLPL 417 F EV+ ++ ++R E D + ++ E +++ + + Sbjct: 245 FDEVRSELMQEVRANVQQEARVADAQAMQKEAKINKEAIEAFAAGYNPQPVKTAP 299 Score = 45.8 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 10/181 (5%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + KP ++V + + + K ++ + +++E+ L G ++++ Sbjct: 129 IYKAKPERFKVPEQV--QVRHILIAGKGADS-RAQIEKIEQELKGGADFAQLAKERSADK 185 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472 G GK V + F P V G Y +Q++ Sbjct: 186 GSAAKGGDLGFFEAGKMV------PEFDKAAFALTKPGELSGIVESKFG-YHILQLEGRH 238 Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532 R R +EV +++ ++ + E + A + E + + T Sbjct: 239 APRTRSFDEVRSELMQEVRANVQQEARVADAQAMQKEAKINKEAIEAFAAGYNPQPVKTA 298 Query: 533 Q 533 Sbjct: 299 P 299 >gi|159046106|ref|YP_001534900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter shibae DFL 12] gi|157913866|gb|ABV95299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter shibae DFL 12] Length = 280 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 64/168 (38%), Gaps = 5/168 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E +R + + + + + ++ + +QA Y+ + ++ ++EA Sbjct: 95 ESQRWALMANSIIDGAIEAAVTEESVQALYDAEFGNIEPEKEFNASHILVETEEEAQALV 154 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L+ G F +LA + + LG F + ++ + + G + + Sbjct: 155 TELEGGADFAELARARSVGPSGPNGGELGWFGPGMMV-APFEMAVIRM-EPGTVSEPVET 212 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ + +++I+ S +EV+ + ++ A E V E Sbjct: 213 QFGWHVIRLNDIRDSAAQPLEEVRGRLEERLSEEAAQEVVDSLVAATE 260 Score = 38.4 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 +E+ + L L G E++R + + G + P++ ++ Sbjct: 147 EEEAQALVTELEGGADFAELARARSVGPSGPNGGELGWF---GPGMMVAPFEMAVI---- 199 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + +P + V G + +++ + + + LEEV +++ E Sbjct: 200 -RMEPGTVSEPVETQFG-WHVIRLNDIRDSAAQPLEEVRGRLEERLSEEAAQE 250 >gi|260576192|ref|ZP_05844185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2] gi|259021672|gb|EEW24975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2] Length = 285 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 60/148 (40%), Gaps = 5/148 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQ 303 ++++ LQA Y+ ++ ++++A + G F +LA Sbjct: 118 AVTDESLQAAYDAKYAHAEPTTEYHAAHILVDSEEKAKALKTQIDGGADFAELAIANSSD 177 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G + + LG F + D++ +L K G+ + I FG+ + ++ + + + Sbjct: 178 GSAANGGDLGWFGLGMMVKP-FEDAVVAL-KPGEVSAPIQTQFGWHLVKLTETRVANAPA 235 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 +V+ ++A ++ + +++ Sbjct: 236 LDDVRDELAGEIEQAALTAHIEKLTAAA 263 >gi|228939473|ref|ZP_04102061.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972327|ref|ZP_04132938.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978940|ref|ZP_04139306.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407] gi|228780814|gb|EEM29026.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407] gi|228787344|gb|EEM35312.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820173|gb|EEM66210.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 293 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK+ I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKEKIRKDL 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 155 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E K+K L Q +D V+ L Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|325265502|ref|ZP_08132223.1| PPIC-type PPIASE domain protein [Clostridium sp. D5] gi|324029250|gb|EGB90544.1| PPIC-type PPIASE domain protein [Clostridium sp. D5] Length = 246 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KK 295 + E K I +S+DE A YE NK+++ E+ + + ++ ++++ +S+ G K Sbjct: 83 MAMEEIMKDITVSDDEASAYYEANKQQFSKGEMVSAKHILTDSEEKCSAVLESITNGDKS 142 Query: 296 FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A E S + LG F + + D+ F+ A+ G + FGY + Sbjct: 143 FEDAARESSMCPSSENGGDLGKFGRGQMVK-EFEDAAFA-AEPGHVVGPVQSQFGYHLIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + + T EV + I M S E K L++ Sbjct: 201 VEEKEEAATAPLNEVIESIKMNMLQQMQSSAYSEMIKELKDK 242 >gi|187917986|ref|YP_001883549.1| basic membrane protein [Borrelia hermsii DAH] gi|119860834|gb|AAX16629.1| basic membrane protein [Borrelia hermsii DAH] Length = 344 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 131/408 (32%), Gaps = 79/408 (19%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K+ + F+ FL++ + + V+ + + + + F + + + + Sbjct: 4 IKVIFMGNFLCFLLFFIVGITSFAQNTPVVI-INLHSNEIITKTEFDSK----VNTLKKT 58 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G +++ K++L L++ Q G++ V I Sbjct: 59 QGRDLSNAE------RKQVLQILIADVLFGQEALKQGIKVGDEEVMQTIRA----QFGLA 108 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + + + +G N E + + LS ++ Sbjct: 109 SLTDEQIRQMIESQGTNWNELLSSMKRSLSAQKLI------------------------- 143 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + I PS + +++E K + P+ RIS++ F +K++ ++ Sbjct: 144 ----LKMAQPKFSEIKTPSEKEVIEYYEANKTKFVNPDISRISHVFFSSKDKKRSEILTK 199 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 + A K+K+ F +R + ++ + L + Sbjct: 200 AKDIANQIKSKKITFEEAVRKYSN----------------------DEGSKAKNGDLGFL 237 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 + G + + + + +F + KGD + I G+ I V+ + + Q+ Sbjct: 238 ARGDQNAQNVLGLDFIKEVF-MLNKGDISQPISSKEGFHIVKVTEMYSQRFLGLQDKISP 296 Query: 367 -----VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 VK I N M + V + + + L S+ + K Sbjct: 297 NVNMTVKDAIKNNMVNIHQQQIVARVQQEIYDKLNKSASIQILDSSLK 344 >gi|152993388|ref|YP_001359109.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1] gi|151425249|dbj|BAF72752.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1] Length = 282 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 22/241 (9%) Query: 163 DVVGMFVGGMRPSN--LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 FV P+ LD A++ R ++ ++ + ++ + EK Sbjct: 36 QDAEAFVSATAPNAHFSQLDPAQKNMITQRLIEKVLFMELAKKEGIE-NDPEFKKALEKI 94 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 KD + + ++ I IS+ E + YEKNK+K+ E+ ++ ++ Sbjct: 95 KDELA---------VNLWMKKQLDSIVISDSEAKDFYEKNKDKFIQKEMVQARHILVKDE 145 Query: 281 KEADEAFQSLK--KGK----KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFS 331 K A E + LK KG+ KFI+LA+ + + LG F+K + + +++ Sbjct: 146 KTAKEIIKELKPLKGEALKKKFIELAKSKSIGPSAPKGGELGKFAKGQMV-PEFSKAVWK 204 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L K + FGY I + + + TV + +VK I ++ + ++KV K L Sbjct: 205 LEKDQITLEPVKTQFGYHIILLEDKIEAQTVPYDKVKDQIIASLKQQEFAKKVAAIAKEL 264 Query: 392 E 392 + Sbjct: 265 K 265 >gi|126463590|ref|YP_001044704.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides ATCC 17029] gi|126105254|gb|ABN77932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides ATCC 17029] Length = 284 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 5/149 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ LQA Y+ ++ ++ EA + + + G F LA+E Sbjct: 118 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEIDGGADFAVLAKEHSSD 177 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + SLG F + D++ + K G+ I FG+ + ++ + + S Sbjct: 178 GAAANGGSLGWFGLGMMVKP-FEDAVVKM-KPGEVVGPIQTQFGWHLVKLNETRIAEKPS 235 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 +++ ++A Q+ + + E + E Sbjct: 236 LDDMRDELAGQIEQEAVARHIDEVTAKAE 264 >gi|228913728|ref|ZP_04077354.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845920|gb|EEM90945.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 287 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + S EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTSVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKEIVQKKAQD 246 >gi|228908084|ref|ZP_04071932.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200] gi|228851502|gb|EEM96308.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200] Length = 293 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQLSEPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.1 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 90/263 (34%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 ++ + D + Y +++ + + +EV ++KD Sbjct: 201 ------KEFEEAAYKLDAGQLSEPVKTTY--GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 38.4 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + K + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 LSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|49185187|ref|YP_028439.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne] gi|49479990|ref|YP_036442.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165870489|ref|ZP_02215143.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488] gi|167633046|ref|ZP_02391372.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442] gi|167639670|ref|ZP_02397940.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193] gi|170687085|ref|ZP_02878304.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465] gi|170706725|ref|ZP_02897184.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389] gi|177649682|ref|ZP_02932684.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174] gi|190565511|ref|ZP_03018431.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I] gi|196040038|ref|ZP_03107341.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99] gi|218903473|ref|YP_002451307.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820] gi|227814851|ref|YP_002814860.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684] gi|229604551|ref|YP_002866676.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248] gi|254684916|ref|ZP_05148776.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066] gi|254722324|ref|ZP_05184112.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055] gi|254737363|ref|ZP_05195067.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North America USA6153] gi|254743452|ref|ZP_05201137.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B] gi|254751679|ref|ZP_05203716.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum] gi|254760198|ref|ZP_05212222.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94] gi|301053856|ref|YP_003792067.1| peptidylprolyl isomerase [Bacillus anthracis CI] gi|46396831|sp|Q81QT1|PRSA3_BACAN RecName: Full=Foldase protein prsA 3; Flags: Precursor gi|49179114|gb|AAT54490.1| protein export protein prsA [Bacillus anthracis str. Sterne] gi|49331546|gb|AAT62192.1| protein export protein prsA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164713644|gb|EDR19167.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488] gi|167512379|gb|EDR87755.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193] gi|167531858|gb|EDR94523.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442] gi|170128456|gb|EDS97324.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389] gi|170669136|gb|EDT19880.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465] gi|172084756|gb|EDT69814.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174] gi|190563538|gb|EDV17503.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I] gi|196029297|gb|EDX67901.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99] gi|218538215|gb|ACK90613.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820] gi|227007172|gb|ACP16915.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684] gi|229268959|gb|ACQ50596.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248] gi|300376025|gb|ADK04929.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI] Length = 283 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274 Score = 40.7 bits (94), Expect = 0.84, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|330814031|ref|YP_004358270.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp. IMCC9063] gi|327487126|gb|AEA81531.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp. IMCC9063] Length = 462 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 66/387 (17%), Positives = 146/387 (37%), Gaps = 51/387 (13%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 +V++ F WG+ D +FS ++ V V + + ++N + L + + N Sbjct: 2 LIVIIIAVFASWGVGD-MFSAGKTNVVAEVSGKNIYSEDYVNELRNGLQTKNYQ-----N 55 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 A L +IL+ LV+ + + E+ + + + I P F K+ KFS Sbjct: 56 VSDAIKDNLHIQILNQLVAEKIFEIYAEEEKIIINDKTLSNFIKDIPEF-SKNEKFSRTE 114 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + L + I+ + + K L + +V ++ + K ++ + S+ Y Sbjct: 115 YEKYLLKNQISSFSFETSFKKNLLKKLIVESQNLDSISTSYHTTRVKDYFEKKISISY-- 172 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 +N + D + + + +K K +Y E + I Y + + +++ + Sbjct: 173 INLEDLYEDVDITEKEILDYHKK-KPSYSN-ELRSIKYAVINQNKEANQSS-------DL 223 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 + KN +E +V N+ F +A + ++ L F+ Sbjct: 224 FFKNIS--------DIENMVLSNR--------------TFDDIATQFSLNIKKSDL--FN 259 Query: 317 KEYIPDVSLADSIFSLA--------KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF-QEV 367 K+ + SL + F + + +I + + ++ I + EV Sbjct: 260 KDGVIKNSLKATAFDRSIIQKSFYLNDQITSELIEVKGSFYLIGINEIVKKKPLILNDEV 319 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394 KK+I N+++ T + K +++E Sbjct: 320 KKNIINKIKKTNINSKANFLINKIKEQ 346 Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 108/276 (39%), Gaps = 11/276 (3%) Query: 355 NIKPSFTVSFQEVK-KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 KPS++ + +K I ++S+ ++ +E + + D+I+ + + Sbjct: 194 KKKPSYSNELRSIKYAVINQNKEANQSSDLFFKNISDIENMVLSNRTFDDIATQFSLNIK 253 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 L + G V + A + ++ + F +D ++ + GS+ + I E + Sbjct: 254 KSDLFNKDG--VIKNSLKATAFDRSIIQKSFYLNDQITSELIEV--KGSFYLIGINEIVK 309 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 + L +VKK+ ++SKAN ++ KE F + ++ + Sbjct: 310 KKPLILN---DEVKKNIINKIKKTNINSKAN-FLINKIKEQNLFDQLISKKKKTVKQLDL 365 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-IS 592 NR++ +NK F + I Q+F+ + + + E DK Sbjct: 366 KNRLE-KNKTFSPNQIQQIFNLKKNELLVVKGPKNYLIKAIDTSYDRTKSNDEMDKLYER 424 Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628 + ++ ++ S +L ++Y V ++ ++ R + Sbjct: 425 QVAMNFDEQIMQSFDKFLNNKYKVKINQKVLDRITN 460 >gi|228985422|ref|ZP_04145581.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774375|gb|EEM22782.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 288 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 119 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + E + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 49 ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 107 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 108 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 135 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 136 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 195 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 196 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 245 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + E Q+V E K+ Sbjct: 246 EQQRLQETTGKWKQQVVNELLKD 268 Score = 37.7 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q ++ V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|304440474|ref|ZP_07400362.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371040|gb|EFM24658.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 370 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 52/360 (14%), Positives = 123/360 (34%), Gaps = 85/360 (23%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 + +V +P +F + + I G E +G + +D + Sbjct: 24 GNKPGVAATVNGVDIPVETFNEEYAAQRNSIVLTSGEDYLKE---KLGKEDMTIDQGIRE 80 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L+ ++ + L D K + + + + G +++++ + Sbjct: 81 FVLNNLVQ-MELVRQDAEKKDI--------KVDEKKVDEQINAIIEQSG-SKEKFEEQLK 130 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + D + L + Sbjct: 131 EQ-------------GITEKFFRDYLAK--------------------------QELVKE 151 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ + +++++IS ++ +A YEK+K+KYF + + ++ Sbjct: 152 YQDH---------------------LKEELKISEEDAKAIYEKDKDKYFVAD---ADHIL 187 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSL 332 + EA + +++GK F +LA+E+ K + LG FS + D++ + Sbjct: 188 VETEDEAKSIKKEIEEGKDFNELAKEKSKDPTAKDNGGKLGEFSTGQMVK-EFEDAVVKM 246 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K+G+ + + FGY + +++++ F EVK I K +E + + K + Sbjct: 247 -KEGEISDPVKTQFGYHLIKLNSLR---HKEFDEVKDQIIETGTSEKLTEYLNKLEKDAK 302 >gi|196043445|ref|ZP_03110683.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108] gi|225864299|ref|YP_002749677.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102] gi|196025754|gb|EDX64423.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108] gi|225788486|gb|ACO28703.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102] Length = 283 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274 Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|229139028|ref|ZP_04267605.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26] gi|228644383|gb|EEL00638.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26] Length = 288 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 119 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 40.7 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 131 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 190 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 191 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 240 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 241 IRKDIEQQRLQDTTGKWKQQVVNELLKD 268 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|332519007|ref|ZP_08395474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola 5H-3-7-4] gi|332044855|gb|EGI81048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola 5H-3-7-4] Length = 711 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 204/656 (31%), Gaps = 92/656 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI---WGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 L IR+ +T V + + + F++ + DALF+ S + V ++ + + +F+ Sbjct: 4 LNKIRQ--KTVVLILVIALALFAFILSSLFDNKDALFNKS-PNVVATINGKDISREAFMA 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + + N+ A + ++ + V A + + +GL ++ Sbjct: 61 RVEAQ------------NNPNATQTQIMNQVYNAEVREAVMQSQFDKLGLTVGREQMRDL 108 Query: 119 ----IARSPLFHGKDNKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTDVVGM 167 +A SP F D F +V + +A Y + + + + + M Sbjct: 109 LKTNLASSPQFFNADGIFDENVLNNYIANLKETSPVAYRQWINYENQVSSGALQQNYINM 168 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226 + + + + + Y+ + + S + + + ++ K Y Sbjct: 169 VKAATTATLAEGALSHKLEGDKVDIKYVYVPFTTIADSTVTVSKSEINAYIKENKTKYDV 228 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + + Y+ F+ + EL +N+E+Y NQ A A Sbjct: 229 EASRNLQYVKFEEVASVEDENAIQGELIKLI-QNREEYVDG----------KNQMVAGFA 277 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +++ + ++ + D K +P +L DSI +L G+ Sbjct: 278 EMNVENAEAYVNANSDAEIKYQDK---FVYKSSLP-RALQDSISNL-NVGNVYGPYKDGQ 332 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI-------------ANQMRITKASEKVKEDYKRLEE 393 + I + + ++ I A TK E+ K + + Sbjct: 333 TFKITKLLEKR--------QLADSIQSSHILIPFVGSQAATAETTKTKEEAKATADSIFK 384 Query: 394 FLALGTS-MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + + E++ + + + +F D Sbjct: 385 LVKNNKTKYAEVANEINTDGSKGKDGSIGWTRL--TTYNPLGFDPDFANFLFFNDKG--- 439 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 V L Y ++I + +V T +K +VKT +++ A+ + Sbjct: 440 SIDVVLTKFGYHIIRIDDKK--NVDTAYKVATIERKIEPSVKTEDDIFRNASNFEVAL-- 495 Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLS 570 +GK+F D+ K + + +D G + F ++ E Sbjct: 496 DGKDFLDVAKENNLKVNPVTSVKELDENIPGVGAERPIVRWAFEEDTKVGNTKRFETKDG 555 Query: 571 YVVFKVTN-------------SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613 YV+ +VT P K K + +N L+ A Q Sbjct: 556 YVIVQVTAKNEAGLMNVEDASVTALPEIRKQKKAKMIKDRVNATTLEDFAAAENQQ 611 Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 76/214 (35%), Gaps = 25/214 (11%) Query: 271 TVEQLVFPNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSDI----SLGSFSKEYI 320 T+E+ + P+ K D+ F++ GK F+ +A+E ++ + L Sbjct: 469 TIERKIEPSVKTEDDIFRNASNFEVALDGKDFLDVAKENNLKVNPVTSVKELDENIPGVG 528 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + F K T GYVI V+ + ++ ++ ++R K Sbjct: 529 AERPIVRWAFEEDTKVGNTKRFETKDGYVIVQVTAKNEAGLMNVEDASVTALPEIRKQKK 588 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 ++ +K+ T++++ + E ++ V G + I ++ Sbjct: 589 AKMIKDRVNA--------TTLEDFAAAENQQVRTALAINMKNPTVSGVGLEPI-----VV 635 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 FG ++ + + VQ + PA Sbjct: 636 GHAFGLNEGETSG--LIAGTKGVFMVQPTKKTPA 667 >gi|307571805|emb|CAR84984.1| protein export peptidyl-prolyl isomerase protein [Listeria monocytogenes L99] Length = 279 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 30/213 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 48 LGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 107 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ YE + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 108 TSDKVLKKYYET-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 161 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ +F Sbjct: 162 ATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 219 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 ++ KK + Q+ + +K++YK Sbjct: 220 EKDKKAVKASYLESQLTTENMQKTLKKEYKDAN 252 >gi|295702743|ref|YP_003595818.1| foldase protein PrsA [Bacillus megaterium DSM 319] gi|294800402|gb|ADF37468.1| foldase protein PrsA [Bacillus megaterium DSM 319] Length = 307 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 21/218 (9%) Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKY--------KDNYRAPEYKRISYILFDVHE 241 RSV + ++ + L E+Y K + + Sbjct: 67 RSVTEEKVLSKKYKVTDKELDQQLNILREQYGDQVDSVIKQKGEKEVKDMLKVDILREKA 126 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 I++S+ EL+ Y++ K ++ ++K A+E +KKG+ F LA+ Sbjct: 127 ATAGIKVSDKELKKAYDEYKA---QKPQIRASHILVKDEKTANEVEAKIKKGEDFASLAK 183 Query: 302 EQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 E + LG F + + ++ + L KKG+ + I +GY I + + K Sbjct: 184 EYSTDQQSAANGGDLGYFGEGQMVK-EFEEAAYKL-KKGEVSKPIKTEYGYHIIKLVDKK 241 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 SF++ K ++ Q++ +K + E K++++ L Sbjct: 242 --KVESFEKKKPELEQQIKRSKVDQ--AEANKKIQKEL 275 >gi|194014491|ref|ZP_03053108.1| foldase protein PrsA [Bacillus pumilus ATCC 7061] gi|194013517|gb|EDW23082.1| foldase protein PrsA [Bacillus pumilus ATCC 7061] Length = 294 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 +++ ++ L L ++ + V ++ + L Q Sbjct: 35 DVTKEELYTTLKKQAGGDALNLLVQQKVLADKYKVSDKEIDKKMEEYKKTLGEDRLKQLQ 94 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +++ +Y ++ Y L + I+I++ E++A Y+ K K ++ Sbjct: 95 DEFGKDYI---KDQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKI------RASHILV 145 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 ++K ADE + L KG+K+ + E + +G F+KE D + + + F L Sbjct: 146 ADKKTADEVEKKLDKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKL- 204 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 K + + + FGY I + + + ++K D+ ++ K ++ Sbjct: 205 KVNEISKPVKSQFGYHIIKKTEERGK----YDDMKADLKKELLNQKQAD 249 >gi|260654336|ref|ZP_05859826.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella anthropi E3_33 E1] gi|260630969|gb|EEX49163.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella anthropi E3_33 E1] Length = 318 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 17/164 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---------DEAFQSLKKGKK-- 295 IS+ E++ Y+ +++ +F PE ++ K A D+A +KK K Sbjct: 121 NISDAEIKQYYDAHQDSFFVPESIRASHILISVPKGASDKEVAEAKDKAMDIIKKIKSGS 180 Query: 296 --FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F + A++ S LG FSK + + + F+L + + FG+ I Sbjct: 181 LEFSKAAQDMSSCPSKVQGGDLGFFSKGQMV-PAFEKAAFALKPGEMTSEPVRTDFGFHI 239 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V++ P+ T+ +VK I + + ++ L + Sbjct: 240 IKVTDAHPAKTMPLDDVKASIKSTLSSQAKLAAFQKAIAELRQK 283 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 4/136 (2%) Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 + K E KA ++ + F +++ + + Sbjct: 158 SDKEVAEAKDKAMDIIKKIKSGSLEFSKAAQDMSSCPSKVQGGDLGFFSKGQMVPAFEKA 217 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVI 607 F+ + P+ + + KVT++ D + + ++ I Sbjct: 218 AFALKPGEMTSEPVRTDFGFHIIKVTDAHPAKTMPLDDVKASIKSTLSSQAKLAAFQKAI 277 Query: 608 AYLKSQYSVTVHDNLI 623 A L+ +Y V + D + Sbjct: 278 AELRQKYPVEILDESL 293 >gi|182680158|ref|YP_001834304.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636041|gb|ACB96815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica subsp. indica ATCC 9039] Length = 299 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ + L+ Y++ + + ++ +A + LK G+ F ++A+E K Sbjct: 127 AVTEEALKTAYDEAAKAQKPEQEIHARHILVATDDDAKAVLKRLKAGEDFAKVAKEVSKD 186 Query: 307 LS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S LG F+K+ + AD+ F L + + + FG+ I V + + Sbjct: 187 PSADGGDLGWFTKDRMV-PEFADAAFKLDEN-QLSEPVKSQFGWHIIQVLGKRQKTFPPY 244 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392 +V++ +A + E V + K + Sbjct: 245 DQVREQVARFVIQRAQGELVAQLRKAAK 272 >gi|65319635|ref|ZP_00392594.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus anthracis str. A2012] Length = 283 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274 Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263 Score = 38.4 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|312878320|ref|ZP_07738236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor lactoaceticus 6A] gi|311794903|gb|EFR11316.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor lactoaceticus 6A] Length = 343 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 60/399 (15%), Positives = 131/399 (32%), Gaps = 101/399 (25%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 V I +++ + F+ S TV+ + +K+ F+ + + Sbjct: 17 GVVGFIVAILVAMFFVF---------SSSLQTVLEINNEKINKKEFLMRYNILKQNAIEM 67 Query: 71 IGFV--VNSE---RARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVWGEIARS 122 ++ E L K+++ L++ Q + G++ V I Sbjct: 68 SNRPDILDIEYSGMKYKDWLKNKVIELLITETLCLQEAKKRGMKLTFAEEQEVNNYINNI 127 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 K++K++ ++F L + NE+ + K L R ++ Sbjct: 128 -----KNDKYAREMFYEYLKKIKSNEELF----KKQLLRERLIDKLY------------- 165 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + + + Q++E K+ YR Sbjct: 166 -----------------KEITKNVTLKEQEMKQYYENNKNEYRM---------------- 192 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 +++ + L+ E E+ K +K A++ +K G LA++ Sbjct: 193 ---VKVVDIFLRVENEQQKA---------------EKEKLANQLMAKIKNGGSIFDLAQK 234 Query: 303 QGK-SLSDISLGSF------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + + G KE + +F+L KKG+ + +I GY IA + + Sbjct: 235 YSEITTKNGQKGVIDYFRKGEKESEFGSVFEEKVFNL-KKGEISEIIQTLNGYHIAQIID 293 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 K + ++ VK +I ++ K + +E L + Sbjct: 294 EKFA---PYESVKGEIEQSLKKQKKDKVFQEYLNELRKK 329 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%) Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN------RMDNENK 542 + + E ANQL+ + K G + D+ + + T N R + Sbjct: 201 RVENEQQKAEKEKLANQLMAKI-KNGGSIFDLAQKYS-EITTKNGQKGVIDYFRKGEKES 258 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNKD 601 FG +VF+ + I+ Y + ++ + K P + + L + Sbjct: 259 EFGSVFEEKVFNLKKGEISEI-IQTLNGYHIAQIIDEKFAPYESVKGEIEQSLKKQKKDK 317 Query: 602 LLDSVIAYLKSQYSVT 617 + + L+ + + Sbjct: 318 VFQEYLNELRKKSVIK 333 >gi|58040109|ref|YP_192073.1| peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter oxydans 621H] gi|58002523|gb|AAW61417.1| Peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter oxydans 621H] Length = 308 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 6/150 (4%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306 +++ + Y+ + E ++ ++ +A + L KG F +LA + K Sbjct: 137 VTDSAMHDFYQSHYANKKPEEEIHARHILVDSEAQAKDIIAQLGKGADFGKLAAQLSKDK 196 Query: 307 ----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG F KE + + + + F++ +H +G+ + V + + Sbjct: 197 GSAGANGGDLGWFKKEDML-PAFSAAAFAMKPNTISQTPVHTQYGWHVIQVLATRTAPIP 255 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +F +V + ++ K + V+ +++ Sbjct: 256 TFDQVHDQVRQELIRDKVRDIVQAAESQVK 285 >gi|197124851|ref|YP_002136802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] gi|196174700|gb|ACG75673.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] Length = 336 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 97/346 (28%), Gaps = 71/346 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + ++AR+ L + D +VS Sbjct: 35 DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRR-AFDQVVSDKLF 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +++ +E +V I K N F+ S LA EG + +Y Sbjct: 94 AEKAKELEIEVTEKQVDDAIEGV----KKQNGFTDAQLESALASEGYSMTDYRARIR--- 146 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R + L V S L +++ Sbjct: 147 ------------------------------RELQNFSLLQYKVAGKIKTSEEDLRNYYQS 176 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + R+ +I E Sbjct: 177 HPQEFDGEDEVRVRHIFIPFAEGGGAQA----------------------------EAQA 208 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + E Q LK G+ F +A+ + LG + I +L D+ F+L K G Sbjct: 209 RAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTI-HRTLEDAAFAL-KTG 266 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + ++ G I V + SF++ + +I ++ +A Sbjct: 267 EMSGLVEAGPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAEN 312 >gi|228919876|ref|ZP_04083232.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839777|gb|EEM85062.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 286 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 42/248 (16%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ D + + M + + K + E++ VD Sbjct: 35 ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77 Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + + Q+ +++ K E + EK + I++ EL+ Y+ Sbjct: 78 ----DEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAIEKTITDKELKENYK--- 130 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 PEI+ ++ ++ A + + L +GK F +LA++ + LG F+ Sbjct: 131 -----PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTA 184 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + D+ + L KK + + + FGY I V++IK F EVK DI + Sbjct: 185 GKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQ 240 Query: 378 TKASEKVK 385 KA + Sbjct: 241 KKAQDAAF 248 Score = 43.1 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + + Sbjct: 177 GDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKE--QKP 226 Query: 479 LEEVLTDVKKDWKTVKTAEEV 499 +EV D+KKD K + Sbjct: 227 FDEVKGDIKKDLVQKKAQDAA 247 >gi|289208891|ref|YP_003460957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] gi|288944522|gb|ADC72221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. K90mix] Length = 289 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 6/159 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + +++EIS ++++AEYE+ E E R ++ ++ A E L G F Sbjct: 123 MLMERIAEELEISEEDVEAEYERQVEYLRGTEYR-ARHILVEDEDSARELLAQLDDGADF 181 Query: 297 IQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LAEE G + LG F+ + + A + +L + FG+ + Sbjct: 182 AELAEEHSIDPGSAARGGDLGWFTPDGMV-PEFAAATEALEPGETTDAPVQSQFGWHLIR 240 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ +I + EK++ Sbjct: 241 LDDTREVEVPPLDEVRAEIIEILESRAIQEKLEALRAEA 279 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 15/166 (9%) Query: 353 VSNIKPSFTVSFQEVKKDIANQM-----RITKASEKVKEDYKRLEEFLA---LGTSMDEI 404 + I +S ++V+ + Q+ +A + ED E LA G E+ Sbjct: 125 MERIAEELEISEEDVEAEYERQVEYLRGTEYRARHILVEDEDSARELLAQLDDGADFAEL 184 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 + I G V + L D P+ + Sbjct: 185 AEEHSIDPGSAARGGDLGWFTPDGMVPEFAAATEALEPGETTDAPVQSQF-------GWH 237 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 +++ ++ L+EV ++ + ++ E++ + + +E Sbjct: 238 LIRLDDTREVEVPPLDEVRAEIIEILESRAIQEKLEALRAEATIEI 283 >gi|30019198|ref|NP_830829.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579] gi|218233989|ref|YP_002365810.1| peptidylprolyl isomerase [Bacillus cereus B4264] gi|229042892|ref|ZP_04190626.1| Foldase protein prsA 1 [Bacillus cereus AH676] gi|229126454|ref|ZP_04255469.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4] gi|229143755|ref|ZP_04272176.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24] gi|229149355|ref|ZP_04277591.1| Foldase protein prsA 1 [Bacillus cereus m1550] gi|296501758|ref|YP_003663458.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] gi|46396827|sp|Q81GY5|PRSA1_BACCR RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|29894741|gb|AAP08030.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579] gi|218161946|gb|ACK61938.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus B4264] gi|228633997|gb|EEK90590.1| Foldase protein prsA 1 [Bacillus cereus m1550] gi|228639708|gb|EEK96117.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24] gi|228657034|gb|EEL12857.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4] gi|228726439|gb|EEL77662.1| Foldase protein prsA 1 [Bacillus cereus AH676] gi|296322810|gb|ADH05738.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] Length = 286 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 42/248 (16%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ D + + M + + K + E++ VD Sbjct: 35 ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77 Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + + Q+ +++ K E + EK + I++ EL+ Y+ Sbjct: 78 ----DEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAIEKTITDKELKENYK--- 130 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 PEI+ ++ ++ A + + L +GK F +LA++ + LG F+ Sbjct: 131 -----PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTA 184 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + D+ + L KK + + + FGY I V++IK F EVK DI + Sbjct: 185 GKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQ 240 Query: 378 TKASEKVK 385 KA + Sbjct: 241 KKAQDAAF 248 Score = 43.1 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + + Sbjct: 177 GDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKE--QKP 226 Query: 479 LEEVLTDVKKDWKTVKTAEEV 499 +EV D+KKD K + Sbjct: 227 FDEVKGDIKKDLVQKKAQDAA 247 >gi|52783929|ref|YP_089758.1| YacD [Bacillus licheniformis ATCC 14580] gi|163119182|ref|YP_077358.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus licheniformis ATCC 14580] gi|319648596|ref|ZP_08002810.1| YacD protein [Bacillus sp. BT1B_CT2] gi|52346431|gb|AAU39065.1| YacD [Bacillus licheniformis ATCC 14580] gi|145902685|gb|AAU21720.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus licheniformis ATCC 14580] gi|317389363|gb|EFV70176.1| YacD protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 17/206 (8%) Query: 196 VLNNRHVPAIADPSNAVL-------TQWFEKYKDNYRAPEYK---RISYILFDVHEKEKK 245 V+ S+ + + + ++ E + +I + + K Sbjct: 74 VVTQMAEKNKIKVSDDDIEREFLLIKAVYNSFYEDENTTEKEWKEQIKHNILLEELLTKD 133 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 I IS+ EL++ Y KNK+ Y + ++ +V ++ EA++ + LK+G F A E Sbjct: 134 IVISDSELKSFYNKNKDLYKFDDSYRLKHIVVKDKDEAEQVLKELKEGSSFEAAAAEHST 193 Query: 306 S----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 LG + E +P L + L + I S GY I + P Sbjct: 194 DRYTAPYGGDLGFVNDQHENVPAEYLEKAE-QLKENQWVDEPIKTSQGYAIIQLKEKLPG 252 Query: 360 FTVSFQEVKKDIANQMRITKASEKVK 385 ++ EVK I Q+ + + +K Sbjct: 253 QAFTYSEVKNQIRRQIAMDQLGDKAS 278 >gi|322434749|ref|YP_004216961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX9] gi|321162476|gb|ADW68181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX9] Length = 672 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 57/352 (16%), Positives = 112/352 (31%), Gaps = 79/352 (22%) Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 Q + S S +Q +Q+ N A K +L +++ L +++ Sbjct: 79 NDQIISRSDVDRSEEQLEQESAQQ-----NLSPADLASRQKDMLRDMIDQQLLLSKAKEL 133 Query: 107 GLEADHGRVWGE--IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 GL AD + I + K + ++G++ +++ + V Sbjct: 134 GLNADAEVIRRLDDIRK----QNKLDSMDD--LEKAARQQGVSFEDFKAQIRNQILTQQV 187 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 V V + A +++E +K ++ Sbjct: 188 VR---------------------------------DEVGRRLQTTQAEQAKYYEAHKKDF 214 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 PE R+S IL + + EI E + A+ Sbjct: 215 EQPEQVRLSEILVPLPDTASPAEIEQAETK----------------------------AN 246 Query: 285 EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 L KG F ++A++ + LG F + + V + D F+LA G+ T Sbjct: 247 GLKSELMKGGDFAEVAKKNSGGPTAAQGGELGLFKRGALAKV-IEDQTFALA-PGESTQP 304 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I G+VI V+ + ++V+ I + + ++ +L E Sbjct: 305 IRTRQGFVILKVNEHQEPGAAPMKDVEPQIQEALYMNAMQPALRAYLTKLRE 356 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 26/270 (9%) Query: 365 QEVKKDIANQMRITKASEKV----KEDYKRLEEFLALG--TSMDEISRREKIVSIDLPLV 418 ++ I Q+ ++KA E E +RL++ SMD++ + + + Sbjct: 115 DMLRDMIDQQLLLSKAKELGLNADAEVIRRLDDIRKQNKLDSMDDLEKAARQQGVSFEDF 174 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 ++ Q+L + +D+ + T Y K+ + Sbjct: 175 KAQIRN-------------QILTQQVVRDEVGRRLQTTQAEQAKYYEAHKKDFEQPEQVR 221 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 L E+L + + E+ +KAN L E K G +F ++ K Sbjct: 222 LSEILVPLPDTASPAEI-EQAETKANGLKSELMKGG-DFAEVAKKNSGGPTAAQGGELGL 279 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598 + Q F+ PI +V+ KV + + + + Sbjct: 280 FKRGALAKVIEDQTFALAPGES-TQPIRTRQGFVILKVNEHQEPGAAPMKDVEPQIQEAL 338 Query: 599 ----NKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + L + + L+ V + I Sbjct: 339 YMNAMQPALRAYLTKLRENAYVDIQPGFID 368 >gi|119899176|ref|YP_934389.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72] gi|119671589|emb|CAL95502.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72] Length = 439 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 60/446 (13%), Positives = 132/446 (29%), Gaps = 76/446 (17%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 +F+ ++ L + A+ V+ + V + + + Q + ++ G + Sbjct: 11 LFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQ-GVQL 69 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 L++++L+ L+ Q D L D + I R ++NK + Sbjct: 70 PPADV----LERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRI----AENNKMNTT 121 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG------MFVGGMRPSNLLLDQAKRFYFEN 189 + L R+G+ + + + + + + V N L F E Sbjct: 122 QLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIVVTDAEVDNFLTSNPDAFSGEE 181 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 V +I+L L Q + + R E + + IS Sbjct: 182 FHVAHILLRAPEGATPEQI--DRLRQRADTVINRLRNGE----DFARVAADSSDAPDGIS 235 Query: 250 NDELQAEYEKNKEKYFSPEIR--------------------------------------- 270 +L +S +R Sbjct: 236 GGDLGWRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQT 295 Query: 271 TVEQLVFPNQK---EADEAFQSL-------KKGKKFIQLAEEQGKSLS---DISLGSFSK 317 ++ +A+ + L G F +LA+ LS LG + Sbjct: 296 RARHILIKTSAVLSDAEAEARLLGLRERVVAGGADFGELAKASSADLSAAKGGDLGWVNP 355 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 ++ ++ K G+ +P + FG+ + V + + + N +R Sbjct: 356 GDTV-PEFERAM-NVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTD-ERKRMAARNILRE 412 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDE 403 KA E ++ ++L + + ++ Sbjct: 413 RKAEEAYEDWVRQLRDSTYVEYRLEN 438 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 104/298 (34%), Gaps = 47/298 (15%) Query: 141 LAREG--INEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 L R+G + + ++ ++ R + +R + L++A EN ++ Sbjct: 62 LQRQGVQLPPADVLERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNTT 121 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 L W D +R I E + KI +++ E+ Sbjct: 122 QLRAALERDGV--------AW-----DRFRNEIRTEILLSRLREREVDAKIVVTDAEVDN 168 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQSLKKGKKFIQLAEEQ 303 N + + E V ++ + AD L+ G+ F ++A + Sbjct: 169 FLTSNPDAFSGEEF-HVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADS 227 Query: 304 GKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--- 357 + S LG ++ +P + +D++ L + G+ +P++ + G + + + + Sbjct: 228 SDAPDGISGGDLGWRQRDRLPAL-YSDAVRDL-RPGELSPLMRSAAGLHLVKLVDRRGGA 285 Query: 358 PSFTVSFQEVKK-----DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + ++ + + + +A ++ +R+ +A G E+++ Sbjct: 286 AAGPQRLEQTRARHILIKTSAVLSDAEAEARLLGLRERV---VAGGADFGELAKASSA 340 >gi|157691720|ref|YP_001486182.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032] gi|157680478|gb|ABV61622.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032] Length = 292 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 18/229 (7%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 +++ ++ L L ++ + V ++ + L Q Sbjct: 35 DVTKEELYTTLKKQAGGDALNLLVQQKVLADKYKVSDKEIDKKMEEYKKTLGEDRLKQLQ 94 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +++ +Y ++ Y L + I+I++ E++A Y+ K K ++ Sbjct: 95 DEFGKDYI---KDQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKI------RASHILV 145 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 ++K ADE + L KG+K+ + E + +G F+KE D + + + F L Sbjct: 146 ADKKTADEVEKKLDKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKL- 204 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 K + + + FGY I + + + ++K D+ ++ K ++ Sbjct: 205 KVNEISKPVKSQFGYHIIKKTEERGK----YDDMKADLKKELLDQKQAD 249 >gi|321314718|ref|YP_004207005.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5] gi|320020992|gb|ADV95978.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5] Length = 294 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 89/204 (43%), Gaps = 28/204 (13%) Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY--------KRISYILFDVHEKE 243 ++ + + S+ L ++ + D Y A E +++ Y L + Sbjct: 57 LVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLKEQVKYELLTQKAAK 116 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 I++++DE++ +E K ++ ++K A+E + LKKG+KF LA+E Sbjct: 117 DNIKVTDDEIKEYWEGLKG------QIRASHILVADKKTAEEIEKKLKKGEKFDALAKEY 170 Query: 304 ----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 G + + LG SK+ D + + F L K + + + FGY I + + Sbjct: 171 STDTGSATNGGELGWISKDNEQLDATFRKAAFKL-KTNEVSDPVKTQFGYHIIKKTEERG 229 Query: 359 SFTVSFQEVKKDIANQMRITKASE 382 ++++KK++ +++ K ++ Sbjct: 230 K----YEDMKKELKSEVLEQKLND 249 >gi|47567527|ref|ZP_00238238.1| rotamase family protein [Bacillus cereus G9241] gi|47555722|gb|EAL14062.1| rotamase family protein [Bacillus cereus G9241] Length = 288 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%) Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226 F M+ S E + ++++ V D L F+ K Sbjct: 40 FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQLGDQFDTLLKQQGLK 99 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E + EK + I++ EL+ Y+ PEI+ ++ ++ A + Sbjct: 100 EETVKNGVRASLAQEKAIEKTITDKELKDYYK--------PEIK-ASHILVKDEATAKKV 150 Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + L +GK F +LA++ + LG F + D+ + L KK + + + Sbjct: 151 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPV 208 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 FGY I V++IK SF++ K DI ++ K + Sbjct: 209 KSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKMQD 247 >gi|229069842|ref|ZP_04203124.1| Foldase protein prsA 1 [Bacillus cereus F65185] gi|228713245|gb|EEL65138.1| Foldase protein prsA 1 [Bacillus cereus F65185] Length = 293 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKDNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 RQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKDN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++R+ + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALARQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 38.0 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + + + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALARQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|229196551|ref|ZP_04323295.1| Foldase protein prsA 1 [Bacillus cereus m1293] gi|228586907|gb|EEK44981.1| Foldase protein prsA 1 [Bacillus cereus m1293] Length = 288 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 119 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 49 ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 107 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 108 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 135 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 136 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 195 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 196 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 245 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V E K+ Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKD 268 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDN 621 + V+D Sbjct: 270 DIKVNDK 276 >gi|229127713|ref|ZP_04256702.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4] gi|228655790|gb|EEL11639.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4] Length = 293 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 65 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 124 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 125 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 175 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + G + P ++ + L G + + ++GY I V++ K Sbjct: 176 NQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 234 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 235 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 286 Score = 41.9 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 54 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 112 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 113 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 140 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++ + + G+ V Sbjct: 141 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTV 200 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 201 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 250 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKD 273 Score = 38.4 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + + Q + + Sbjct: 155 EKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 214 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 215 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 274 Query: 615 SVTVHDN 621 + V++ Sbjct: 275 DIKVNNK 281 >gi|86160749|ref|YP_467534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777260|gb|ABC84097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 317 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 51/380 (13%), Positives = 109/380 (28%), Gaps = 96/380 (25%) Query: 20 VLFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 +L L G + SG V V + +P + + + Sbjct: 8 ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIPPDALARELRDAQAGAEGQAPAAG 67 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L +++LD+LV A L Q + +V R F Sbjct: 68 DV-------LRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRA-EYPGTHFDD- 118 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 LA+E +++ E L+ + Sbjct: 119 ----LLAQERLSQAELKARLKDQLTVERLFEQ---------------------------- 146 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 V +A + +++ ++ ++ PE Sbjct: 147 -----EVFPQVQVVDAEVERYYAEHGAEFQEPERV------------------------- 176 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSL---SDIS 311 V Q+V +++EA + + L + + F ++A + Sbjct: 177 ---------------HVLQIVVASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKGGGD 221 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG + + D+ F+L + V +G+ + V KP+ + ++ + +I Sbjct: 222 LGFIGRGSGF-PEVFDTCFALP-VNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEI 279 Query: 372 ANQMRITKASEKVKEDYKRL 391 A ++ K + E + L Sbjct: 280 AEKLGREKRAGAQAEYLEAL 299 >gi|326940021|gb|AEA15917.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 283 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK+ I + + + + +++ L + ++ K Sbjct: 225 E--LKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276 Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 44 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 130 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 131 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 191 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKEKIRKDL 240 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E K+K L Q +D V+ L Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 264 Query: 615 SVTVHDN 621 + V++ Sbjct: 265 DIKVNNK 271 >gi|294497370|ref|YP_003561070.1| foldase protein PrsA [Bacillus megaterium QM B1551] gi|294347307|gb|ADE67636.1| foldase protein PrsA [Bacillus megaterium QM B1551] Length = 307 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 21/218 (9%) Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKY--------KDNYRAPEYKRISYILFDVHE 241 RSV + ++ + L E+Y K + + Sbjct: 67 RSVTEEKVLSKKYKVTDKELDQQLNILREQYGDQVDSVIKQKGEKEVKDMLKVDILREKA 126 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 I++S+ EL+ Y++ K ++ ++K A+E +KKG+ F LA+ Sbjct: 127 ATAGIKVSDKELKKAYDEYKA---QKPQIRASHILVKDEKTANEVEAKIKKGEDFASLAK 183 Query: 302 EQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 E + LG F + + ++ + L KKG+ + I +GY I + + K Sbjct: 184 EYSTDQQSAANGGDLGYFGEGQMVK-EFEEAAYKL-KKGEVSKPIKTEYGYHIIKLVDKK 241 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 SF++ K ++ Q++ +K + E K++++ L Sbjct: 242 --KVESFEKKKPELEQQIKRSKVDQ--AEANKKIQKEL 275 >gi|229108609|ref|ZP_04238221.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15] gi|228674864|gb|EEL30096.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15] Length = 286 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 29/195 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + F++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F+ + D+ + L KK + + + FGY I V++IK F EVK D Sbjct: 178 DLGYFTAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGD 233 Query: 371 IANQMRITKASEKVK 385 I + KA + Sbjct: 234 IKKDLVQKKAQDAAF 248 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + + Sbjct: 177 GDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKE--QKP 226 Query: 479 LEEVLTDVKKDWKTVKTAEEV 499 +EV D+KKD K + Sbjct: 227 FDEVKGDIKKDLVQKKAQDAA 247 >gi|254466473|ref|ZP_05079884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales bacterium Y4I] gi|206687381|gb|EDZ47863.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales bacterium Y4I] Length = 273 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KS 306 + L+A YE+ + ++ ++EA + + L G F LA+E+ Sbjct: 108 EEALRAAYEEKYSSGDGGDEFHAAHILVETEEEALDVIKELDDGADFATLAKERSTGPSG 167 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 S LG F+ + +++ L + G+ + + FG+ + ++ + + F E Sbjct: 168 PSGGDLGWFTTGRMV-PEFEEAVIKL-RSGEVSGPVQTQFGWHVILLNERRKTEAPEFDE 225 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 V+ +A++++ +V E E +D Sbjct: 226 VRAQLADELQQKAVEARVNELTAASEIERPEIEDLDPA 263 >gi|251772781|gb|EES53343.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum ferrodiazotrophum] Length = 382 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 53/355 (14%), Positives = 112/355 (31%), Gaps = 71/355 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S + V + S K I + S L+ ++ ++ Sbjct: 70 DSIMAVVNHHSITKSEVDRELKPTFEKIHATYQGPAYMQLVAS--LEYNVMMKKINERLE 127 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + + +GL V I K+N + LA +G+ ++Y K L Sbjct: 128 LEEADRLGLSVTDDEVDHAIDDIMQ---KNNIQERWQLKNALASQGLTFRQYRKKLKKQL 184 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + +V V + S + +F K Sbjct: 185 TVMKLVNQ---------------------------------EVRSTVVISPEEVRDYFLK 211 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++D YR P + ++ I + E +I+ Sbjct: 212 HRDEYRLPAHVSLADIFLALPENPTPAQIAE----------------------------V 243 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +K+ + + + +G F LA + + + S +LG+ +K+ + L FS+ G Sbjct: 244 RKKGEHVLRQIGRGDDFEMLAGSESQGPNAESGGALGNLTKDQLL-PELIGPAFSVP-VG 301 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +I G+ I V + F ++K+ I N + ++++ ++L Sbjct: 302 KTSGLIQTDRGFYIIKVLAREAQPYQKFDDIKQTILNTLTKKTTEKRLRLWLEKL 356 >gi|229101746|ref|ZP_04232463.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28] gi|228681694|gb|EEL35854.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28] Length = 287 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 35/242 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ + + + M + E + + ++ V Sbjct: 35 ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVEDKDVDKR 76 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D + + F+ K E + + EK + I++ EL+ Y+ Sbjct: 77 FDETKKQVGDQFDTLLKQQGMKEETFKNTIRASLAQEKAIEKTITDKELKDNYK------ 130 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 ++ ++ A + + L +GK F +LA++ + LG F + Sbjct: 131 ---PQIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFEHGKM 187 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D+ + L KK + + + FGY I V++IK SF++ K DI ++ K Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKTQFGYHIIKVTDIKEPE-KSFEQSKADIKKELIAKKM 244 Query: 381 SE 382 + Sbjct: 245 QD 246 Score = 36.9 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 9/141 (6%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K + Q++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKDNYKPQIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + ++ Y +++ + ++ Sbjct: 177 GDLGFFEHGKMVKEFEDAAYKLKKDEVSEPVKTQF--------GYHIIKVTDIKEP-EKS 227 Query: 479 LEEVLTDVKKDWKTVKTAEEV 499 E+ D+KK+ K + Sbjct: 228 FEQSKADIKKELIAKKMQDGA 248 >gi|146296118|ref|YP_001179889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409694|gb|ABP66698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 340 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 123/406 (30%), Gaps = 95/406 (23%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 + + S + I V + + LI + + + V+ V ++ + + Sbjct: 1 MNRKSLIVITSIIFVSIILSLLIL-KDHIVKMIDDNKVVLEVNGDQITKREYKIRFNTLK 59 Query: 65 GMISQ------KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRV 115 Q + V N + R + L ++ L+ Q + + Sbjct: 60 ENAIQFSSRTDILDQVFNGKTYREL-LKDELFRILIEELLCLQEARRKNIYLTRQEEDEI 118 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I K + + F L + G +E + K Sbjct: 119 RKYIEEL-----KRDMEMRNYFNQYLRKIGSDENHFYRDLQK------------------ 155 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 R ++ + ++V S++ + +++ K +R + I Sbjct: 156 -------------TRIINKLY---KYVTERITLSDSEVIKYYNANKSQFRKIKVMDIFLR 199 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + + E KK ++ A+E LK+G+ Sbjct: 200 VENAEEDAKKRKV----------------------------------ANEIISELKRGED 225 Query: 296 FIQLAEEQGKSLS-DISLGSF------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F +L ++ + S D G KE + +F LA G + VI GY Sbjct: 226 FEKLVKKYSEVESLDGKKGIIDYFRKGEKEAQYGSVFEEEVFKLA-VGQISNVIKTVNGY 284 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 I V + K + F EVK +I ++ K E K + L++ Sbjct: 285 HIVKVIDEK---YMPFDEVKGEIQTKLIKQKKDEVFKSYIESLKKM 327 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 12/138 (8%) Query: 490 WKTVKTAEEVSSK--ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN------RMDNEN 541 + E+ + AN+++ E K G++F + K + + + R + Sbjct: 198 LRVENAEEDAKKRKVANEIISEL-KRGEDFEKLVKKYS-EVESLDGKKGIIDYFRKGEKE 255 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNK 600 +G +VF V + I+ Y + KV + K P E + + L + Sbjct: 256 AQYGSVFEEEVFKLAVGQISNV-IKTVNGYHIVKVIDEKYMPFDEVKGEIQTKLIKQKKD 314 Query: 601 DLLDSVIAYLKSQYSVTV 618 ++ S I LK +++ Sbjct: 315 EVFKSYIESLKKMSKISI 332 >gi|15613740|ref|NP_242043.1| protein secretion (post-translocation chaperonin) [Bacillus halodurans C-125] gi|46397037|sp|Q9KDN4|PRSA_BACHD RecName: Full=Foldase protein prsA; Flags: Precursor gi|10173793|dbj|BAB04896.1| protein secretion (post-translocation chaperonin) [Bacillus halodurans C-125] Length = 333 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 106/289 (36%), Gaps = 32/289 (11%) Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 + Y + + L + ++ + +D+ + V+ + Sbjct: 51 ERYGEAILQELVQRHLISQAADSVEIPQEEIDEELETFKSQIGVETDDEMLDALSNQFGI 110 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + ++ + Y P L + +EI+++E QA +++N++ E Sbjct: 111 TVENKEEF----VNEYILPP-------LVLEKLAVEGVEITDEEKQAYFDENRDSLIEVE 159 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324 ++ +++ A+E L+ G F +LA E S + LG F K + Sbjct: 160 ---ASHILVEDEETAEEVLDRLEAGDDFAELASEYSVDPSAEANNGDLGFFGKGDMV-PE 215 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK- 383 ++ F++ + + + + ++GY I V++ K S++E+++ I + + ++ + Sbjct: 216 FEEAAFNM-EIDEVSEPVESTYGYHIILVTDRKD----SYEELEEKIHDTLMRERSRTQE 270 Query: 384 -------VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 + D L++ + + E ID +D Sbjct: 271 EVLRDLLAQADINVLDDQFEGLFDLPDAPPVEDTPEIDGEDASDEAEDQ 319 >gi|297538002|ref|YP_003673771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp. 301] gi|297257349|gb|ADI29194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp. 301] Length = 262 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 73/188 (38%), Gaps = 8/188 (4%) Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + + +Y A E +L + KK IS+ + +A YE+ K+ Y E Sbjct: 72 QEAQKLGLDKQADYVAREELSRRELLTSAYLQDFVKKNPISDADTKAAYEQYKKAYGDKE 131 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324 + ++ + EA + L KG F +LA+E+ LG FS + Sbjct: 132 Y-SARHILVKTEAEAKDIIAQLGKGADFAKLAKEKSMDPGSKEKGGDLGWFSPATMVKP- 189 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 +D++ L K FG+ + + + + + + + +VK + ++ + + Sbjct: 190 FSDAVAGLQKGAVSATPAQTQFGWHVIKLVDTRSAQPLPYDKVKDGLQKNLQQRNLEKMM 249 Query: 385 KEDYKRLE 392 + + + Sbjct: 250 SDLRTKAK 257 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 10/124 (8%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-- 557 ++A ++ + K G +F + K + + +F + + FS V Sbjct: 142 EAEAKDIIAQLGK-GADFAKLAKEKSMDPGSKE----KGGDLGWFSPATMVKPFSDAVAG 196 Query: 558 ---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 V P + + V K+ +++ DK L + + + L+ +++ L+++ Sbjct: 197 LQKGAVSATPAQTQFGWHVIKLVDTRSAQPLPYDKVKDGLQKNLQQRNLEKMMSDLRTKA 256 Query: 615 SVTV 618 + + Sbjct: 257 KIDI 260 >gi|206973718|ref|ZP_03234636.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97] gi|217959835|ref|YP_002338389.1| peptidylprolyl isomerase [Bacillus cereus AH187] gi|206747874|gb|EDZ59263.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97] gi|217064695|gb|ACJ78945.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH187] Length = 283 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274 Score = 40.7 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V E K+ Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNELLKD 263 Score = 38.4 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|83749030|ref|ZP_00946037.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551] gi|83724293|gb|EAP71464.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551] Length = 299 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL +YEK K ++ + + ++ + +A LK G F ++ Sbjct: 136 EDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 195 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG+ T + FG+ + + + Sbjct: 196 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDT 255 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + +F++VK + M + K + K L E Sbjct: 256 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 295 >gi|329962043|ref|ZP_08300054.1| hypothetical protein HMPREF9446_01629 [Bacteroides fluxus YIT 12057] gi|328530691|gb|EGF57549.1| hypothetical protein HMPREF9446_01629 [Bacteroides fluxus YIT 12057] Length = 712 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 97/722 (13%), Positives = 216/722 (29%), Gaps = 126/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + V + + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETVSAQDYQAMVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G S+ ++ + ++ V +++ + +GL + I Sbjct: 61 EYTEVIKFSSGMNALSDE-QTNQIKDEVWRRYVENKLVEKEAKKLGLTVSKAELQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHYT----------K 157 + F F D+ L + + +Y ++Y K Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQM-PSQYAEYYESMYKFWSFIEK 178 Query: 158 MLSRTDVVG-------------------MFVGGMRPSNLLL------------------- 179 L + + F G + S+LLL Sbjct: 179 SLVQARLQEKYQALITKSLFSNPVEAQDAFDGRVDQSDLLLAAIPYTSIVDSTITVTDSD 238 Query: 180 --------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRA-- 226 + R Y E R++ +I + P + ++ + +Y Sbjct: 239 LKAAYDKKKEQFRQYVETRNIKFIDVQVTASPEDKAAIQKEMEEYTAQLAGTPADYTTFV 298 Query: 227 ----------PEYKRISYILFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266 Y + DV + + + +++ + + K Sbjct: 299 RSTGSTVPYVDLYYTAKSLPADVAARLDSVSVGGVYGPYYNVTDNTINSF--KKLASATL 356 Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ + A D + ++K G F ++A++ G++ + IS ++ Sbjct: 357 PDSIEFRQIQVVAEDAAKTKSLADSIYNAIKDGADFAEVAKKYGQTGEPTWISSANYEGA 416 Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 I +L +I +LA+ + T + G VI V+ K + V K Sbjct: 417 QIDGDNLKYITTITTLAQN-ELTNLALGQAN-VILQVTGKKATKDKYKVAVVKR-----P 469 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + + E + Y +F+A ++++++ + L +D + + Sbjct: 470 VEFSKETYSKAYNDFSQFIAANNTLEKMAANAEDAGYRL--LDKTDLYSSEHGIGGVRGT 527 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F + V + +P R L V ++ + K A Sbjct: 528 KDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLRFEILRDKKA 587 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + ++ KN + S+ +S S Sbjct: 588 EKIMADMKAANATSFEQYKNM---ANAVSDSVKHVTFAAPAYVPALRTSEPLVSAYASVA 644 Query: 557 VEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 PI+ V + K+ ++ + L M + + + ++ L + Sbjct: 645 ELNKLSAPIKGNGGVFVLQPYAKEKLNETFNQETEETTLAAMHAR-MANQFMSDLYLKAD 703 Query: 616 VT 617 V Sbjct: 704 VK 705 >gi|270157914|ref|ZP_06186571.1| chaperone SurA [Legionella longbeachae D-4968] gi|289163812|ref|YP_003453950.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella longbeachae NSW150] gi|269989939|gb|EEZ96193.1| chaperone SurA [Legionella longbeachae D-4968] gi|288856985|emb|CBJ10799.1| putative peptidyl-prolyl cis-trans isomerase SurA [Legionella longbeachae NSW150] Length = 431 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 55/433 (12%), Positives = 133/433 (30%), Gaps = 75/433 (17%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI L+ +F ++ G++ A + V V + S + I + Sbjct: 4 KIALICIFFS-VVMGIAQAKQML--DKVVAVVNDGVITESELNKQVELSKKQILAQ---- 56 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + L K++L +L+ Q + GL D + I + N + Sbjct: 57 -KMQLPEESVLRKQVLQHLIDVDLQLQMAKKNGLTVDDTELNQAIEKIAS----ANHVTL 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVD 193 + R+G++ EY ++ K + + + ++ ++Q + Sbjct: 112 TQLREEIVRQGMSWDEYRENIRKEMLLSHLQQKAVGRDAMVTSEQVEQYLKTEGGIVDRS 171 Query: 194 YIVLNNRH--VPAIADPSNAVLTQWFEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISN 250 + ++ +P +P++ + + K K + K+ + + + + Sbjct: 172 ALTYRIQNIVIPLGEEPTSEQVKK--AKNKAELLLSKIKKGDDFSRLAIENSSGEFALEG 229 Query: 251 DELQAEYEKNKEKYFSPEIR-------------------------------------TVE 273 +L + + F+ E+ V Sbjct: 230 GDLGERHLAEIPELFAKEVVKMKVGQVAGPLRAGNGFQLIKLVSIGGENQHHIITKTHVR 289 Query: 274 QLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYI 320 ++ +K+ +Q +K GK F +A++ + LG S + Sbjct: 290 HILLKPDPNMLPEDAKKQVRNIYQQIKAGKDFALMAKQYSLDSASAVKGGDLGWVSPGVL 349 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ LA + +P + FG+ + V K + + ++R Sbjct: 350 V-PEFEKAMDKLAIN-EISPPVKSQFGWHLIQVLGRKQE-----DDSEAFKVQKVRQFLQ 402 Query: 381 SEKVKEDYKRLEE 393 K E + ++ Sbjct: 403 QRKFAEAVQNWQQ 415 >gi|189499340|ref|YP_001958810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides BS1] gi|189494781|gb|ACE03329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides BS1] Length = 701 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 76/622 (12%), Positives = 187/622 (30%), Gaps = 102/622 (16%) Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87 WG+ + FS G + V V + + + + + + ++ L + Sbjct: 30 WGMDFSGFSGGG-TLAGKVNGTPVEYRQYEQVYDRLVDDFRSRSPQAELTDGLER-ELRQ 87 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS-------PLFHGKD-NKFSHDVFVS 139 + D +V+ LD+ E + V + F + + Sbjct: 88 RAWDIVVNQIILDEQFEKYNIRVSDEEVLAAVESDNPPMVILQNFINPETGSIDREK--- 144 Query: 140 RLAREGINEK------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 L ++ + D + L + G ++ S+ LD S Sbjct: 145 -LDSSRMDPENRDVWLSIEDIIRRELMVNKLQGTLQAMVKVSDSELDALVERELGTFSAS 203 Query: 194 YIVLNNRHVPAIA--DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + V V + ++ + Q++E+ +D +R + + Y++F Sbjct: 204 FAVFPYSAVGGDSLYSVADPEIKQYYEENRDLFRQEPTRSLEYVIFSA------------ 251 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 P ++++ L + LA + +S S Sbjct: 252 -------------------------IPTERDSLTIKTELASLAEDFTLAADDSAFVSLQS 286 Query: 312 LGSFSKEYIPDVS-----LADSIFSLA--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + + + + + D +F+ + K G I Y + V + TV+ Sbjct: 287 DRADTYDKVYSRADFSVQAGDDLFADSGLKAGALIGPIVDRSSYRMIKVQEVMKGDTVAR 346 Query: 365 QE------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 K D++ + ++ + +++ + + G +++ + S D Sbjct: 347 ASHILIPFSKGDVSGE-------KEARGLAEKIMQEIRSGKKFADLAMQY---SQDPGSA 396 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G A +P Q++FR + L +++ + Sbjct: 397 ANGGDLGWFSRTAMVPEFAQVVFRAATGTLAGPVETQYGLH-----IIKVTGKDNSAI-- 449 Query: 479 LEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +++ ++ + + T E KA + +E ++G F + + TT + Sbjct: 450 ---ACSEIVRNIRPSGATLENARRKAAEFQIEAEEKG--FDRATEIFEKTKNTTGPFTKT 504 Query: 538 DN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-----KVGPVQEKDKFI 591 + + + F+ ++ ++V +V + +D Sbjct: 505 GVIPDIGYNNSIVKFAFNASKGAFSDI-VQVDAGFLVLRVAEINDSGFRSLDEGLQDMIR 563 Query: 592 SYLTQMMNKDLLDSVIAYLKSQ 613 L + LD ++ L Q Sbjct: 564 QELIVRKKGEALDGRLSLLLKQ 585 >gi|229155916|ref|ZP_04284017.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342] gi|228627523|gb|EEK84249.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342] Length = 288 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 60 YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 119 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 120 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 170 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 171 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 229 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + E + +++ L + + K Sbjct: 230 E--LKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDADIKVNDKEFK 279 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 49 ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 107 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 108 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 135 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 136 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 195 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 196 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 245 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + E Q+V E K+ Sbjct: 246 EQQRLQETTGKWKQQVVNELLKD 268 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 6/134 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 150 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 209 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614 P++ Y + KVT+ K + P E + Q V+ L Sbjct: 210 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQETTGKWKQQVVNELLKDA 269 Query: 615 SVTVHDNLIQRYLD 628 + V+D + + Sbjct: 270 DIKVNDKEFKNAFE 283 >gi|30020404|ref|NP_832035.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579] gi|46396824|sp|Q81DT1|PRSA3_BACCR RecName: Full=Foldase protein prsA 3; Flags: Precursor gi|29895955|gb|AAP09236.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579] Length = 283 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 28/234 (11%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K +++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTDKDVKNNYK--------PEMK-VSHILVKDEKTAKEIKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 NQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 F EVK I + + + + +++ L + ++ K Sbjct: 225 E--LKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDADIKVNNKEFKDT 276 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 44 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 102 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTDKDVKNN 130 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++ + + G+ V Sbjct: 131 YKPEMKVSHILVKDEKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTV 190 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 191 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDKIRKDI 240 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V + K+ Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKD 263 Score = 38.0 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + + E G++F + + Q + + Sbjct: 145 EKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KDK + Q +D V+ L Sbjct: 205 VSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVNDLLKDA 264 Query: 615 SVTVHDN 621 + V++ Sbjct: 265 DIKVNNK 271 >gi|82701654|ref|YP_411220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] gi|122070651|sp|Q2YBP3|SURA_NITMU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|82409719|gb|ABB73828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] Length = 440 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 60/412 (14%), Positives = 120/412 (29%), Gaps = 63/412 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + L + ++ G L+K++L+ ++ Q Sbjct: 40 VAVVNENVITRHELDEMLGAMLKQLQKQ-GVQPPPPAV----LEKQLLERIILNRVQLQL 94 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + GL + + R ++NK S F LA +G++ ++ D + Sbjct: 95 ANETGLTVSDAELDQTLRRI----AQENKMSLQEFDRALAEDGVSFSKFRDEIRDEIILV 150 Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFE------------------------NRSVDYIVL 197 + + + +D + R Sbjct: 151 RLKEREVSNRVSVTEGEVDHFLETQEDSPSQSDEYRIAHILIQVSEGADPLKRDAARQRA 210 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKD-------NYRAPEYKRISYILFDVHEKEKKIE--- 247 + A A + F D N+R + K +I Sbjct: 211 ESALAKLKAGTEFAQVAAEFSDAPDAMEGGLLNWRPAAQLTKKFAEILTPMKPGEITGII 270 Query: 248 -------ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------EAFQSLKKGK 294 I + + R + + EAD E + L G Sbjct: 271 PSPNGFHILKLVERRNQDTVTTMIDQTHARHILIKISELTSEADAHRRVTELKERLDNGS 330 Query: 295 KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 KF +LA+ E + + LG S ++ +L K G+ + + FG+ + Sbjct: 331 KFEELAKLHSEDASAPTGGDLGWISPGDTV-PEFEQAMSAL-KPGEISSPVQSPFGWHLI 388 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V + + VS + ++ +R KA +E +RL + + ++E Sbjct: 389 QVIERR-TQDVSQERKRQSARQAIRARKAETAFQEWLQRLRDRAYVEYRLEE 439 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 55/370 (14%), Positives = 115/370 (31%), Gaps = 48/370 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ S+ LDQ R + + + S Sbjct: 84 RIILNRVQLQLANETGLTVSDAELDQTLRRIAQENKMSLQEFDRALAEDGVSFS------ 137 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +R I + E ++ ++ E+ E ++ + + + Sbjct: 138 -------KFRDEIRDEIILVRLKEREVSNRVSVTEGEVDHFLETQEDSPSQSDEYRIAHI 190 Query: 276 VFPN------------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPD 322 + ++ A+ A LK G +F Q+A E + + G + + Sbjct: 191 LIQVSEGADPLKRDAARQRAESALAKLKAGTEFAQVAAEFSDAPDAMEGGLLNWRPAAQL 250 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVKKD-IANQMRITK 379 I + K G+ T +I G+ I + + TV+ + I ++ Sbjct: 251 TKKFAEILTPMKPGEITGIIPSPNGFHILKLVERRNQDTVTTMIDQTHARHILIKISELT 310 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + L+E L G+ +E+++ P G G V P EQ Sbjct: 311 SEADAHRRVTELKERLDNGSKFEELAK-LHSEDASAPTGGDLGWISPGDTV---PEFEQA 366 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + P V P G + +Q+ E DV ++ K + + Sbjct: 367 MSAL----KPGEISSPVQSPFG-WHLIQVIERR----------TQDVSQERKRQSARQAI 411 Query: 500 SSKANQLVLE 509 ++ + + Sbjct: 412 RARKAETAFQ 421 >gi|78776717|ref|YP_393032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas denitrificans DSM 1251] gi|78497257|gb|ABB43797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas denitrificans DSM 1251] Length = 277 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 16/268 (5%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 ++ L+ ++ + + +++ DV + + + K+ F + ++ +V Sbjct: 11 LALLSAISLSAQTLVSVNGTEITQQDVDKELMAATQGRFNQVPAEKQAEFRKQVLEQLVA 70 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE--KKIEISNDELQA 255 ++ K+ Y + I V +K KI ISNDEL+ Sbjct: 71 KELVYDDAKKTGVLTSPEY----KEKYEEVTQRIQKEIAIQVWQKREIDKIAISNDELKK 126 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KG----KKFIQLAEEQG---KS 306 Y+ NKE++ E ++ + +A LK KG KF++LA+ + + Sbjct: 127 YYDANKEEFVENESVNARHILVEKESDAKNIIAELKPLKGDALKNKFMELAKSKSTCASA 186 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LG F+ + D FS+ K + FGY + ++ + K T +F E Sbjct: 187 AEGGDLGYFTAGQMV-PEFNDKAFSMKAKEMTLEPVKTQFGYHVIYIEDKKAKATKNFTE 245 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEF 394 VK I ++++ KA + K LE+ Sbjct: 246 VKSFIEQRLKMEKAKTVMLAKMKELEKK 273 >gi|222095920|ref|YP_002529977.1| peptidylprolyl isomerase [Bacillus cereus Q1] gi|221239978|gb|ACM12688.1| protein export protein prsa [Bacillus cereus Q1] Length = 283 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDADIKVNDKEFK 274 Score = 38.4 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNYKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDS 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V K+ Sbjct: 236 IRKDIEQQRLQDTTGKWKQQVVNGLLKD 263 >gi|117925616|ref|YP_866233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp. MC-1] gi|117609372|gb|ABK44827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp. MC-1] Length = 442 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 74/501 (14%), Positives = 152/501 (30%), Gaps = 92/501 (18%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + WV + +V + + + V V + + S + + ++ S+ Sbjct: 5 KRWVRWVIMVSMILLSTLT--KPVEAGVPLDGIAAVVEGEIILESEIADQLRAQVMKFSR 62 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 E+ L +++LD V Q + +G+ V G + R + Sbjct: 63 ------AGEQVDVALLRRRVLDGAVMRVLRAQKAKQLGINLKDADVDGAVQRM----AQH 112 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 N S + F LAREG+ Y+ L ++ Sbjct: 113 NNVSVEQFKMMLAREGVGFDSYLSSIRDQLYVQQIIRQV--------------------- 151 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + S+ + ++ + + PE + K+I +S Sbjct: 152 ------------ILPSVRVSDEEVQDLYKATRQD---PEKIGGE-----PELRIKQILLS 191 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308 PE + V +A L+ G F +LA E S Sbjct: 192 ----------------VPENALI-HRVREISDKAKSLVSQLRGGASFARLASEHSDDPSG 234 Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF---TVS 363 +G F + + + D +F L + G + + + G+ I V+ + Sbjct: 235 LNGGDMGWFKRGEL-QAQIEDLVFKL-EDGAISEPVRTTQGFHIFMVAERRVQQHFGQSE 292 Query: 364 FQEVKKDIANQMRI------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 VK + + + S +V+ ++L + G S E+++R S D Sbjct: 293 GDHVKVYARHILLKVAPNSDAQTSAQVRNQLEKLRREIEAGASFAEVAKRY---SQDDGS 349 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G +P E + F + P V P G + +++ + + Sbjct: 350 AQKGGDLGGFGRGVMVPSFEDVAFFL----KPGVVSEPVRSPFG-WHLIEVTKREEQKAD 404 Query: 478 KLEEVLTDVKKDWKTVKTAEE 498 ++E ++ + K Sbjct: 405 TMDEAKKELTVRLREAKIKAR 425 >gi|229095647|ref|ZP_04226628.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29] gi|229114599|ref|ZP_04244013.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3] gi|228668664|gb|EEL24092.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3] gi|228687779|gb|EEL41676.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29] Length = 287 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 35/242 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++++ + + + GM + E + ++++ V Sbjct: 35 ITKEDFYNEMKQKAGSQVLQGMVM------------------EKVLIKNYKVDDKEVDKK 76 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D + + F+ K E + EK + I++ EL+ Y+ Sbjct: 77 LDETKKQVGDQFDTLLKQQGMKEETFKNMLRAQLAQEKAIEKTITDKELKENYK------ 130 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 PEI+ ++ ++ A + + L +GK F +LA++ + LG F + Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFEHGKM 187 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D+ + L KK + + + FGY I V++IK SF++ K DI ++ K Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKTQFGYHIIKVTDIKEPE-KSFEQSKADIKKELIAKKM 244 Query: 381 SE 382 + Sbjct: 245 QD 246 >gi|225862989|ref|YP_002748367.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB102] gi|225790183|gb|ACO30400.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB102] Length = 287 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKEIVQKKAQD 246 >gi|118476653|ref|YP_893804.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam] gi|196044235|ref|ZP_03111471.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB108] gi|229090092|ref|ZP_04221342.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42] gi|229183351|ref|ZP_04310579.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1] gi|301052687|ref|YP_003790898.1| peptidylprolyl isomerase [Bacillus anthracis CI] gi|118415878|gb|ABK84297.1| protein export protein [Bacillus thuringiensis str. Al Hakam] gi|196024874|gb|EDX63545.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB108] gi|228600135|gb|EEK57727.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1] gi|228693169|gb|EEL46880.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42] gi|300374856|gb|ADK03760.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI] Length = 287 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKEIVQKKAQD 246 >gi|291483469|dbj|BAI84544.1| molecular chaperone [Bacillus subtilis subsp. natto BEST195] Length = 294 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 88/204 (43%), Gaps = 28/204 (13%) Query: 196 VLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY--------KRISYILFDVHEKE 243 ++ + + S+ L ++ + D Y A E +++ Y L + Sbjct: 57 LVQEKVLDKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDYLKEQVKYELLTQKAAK 116 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 I++++DE++ +E K ++ ++K A+E + LKKG+KF LA+E Sbjct: 117 DNIKVTDDEIKEYWEGLKG------QIRASHILVADKKTAEEIEKKLKKGEKFDALAKEY 170 Query: 304 ----GKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 G + + LG SK+ D + + F L K + + + FGY I + + Sbjct: 171 STDTGSATNGGELGWISKDNEQLDSTFRKAAFKL-KTNEVSDPVKTQFGYHIIKKTEERG 229 Query: 359 SFTVSFQEVKKDIANQMRITKASE 382 + ++KK++ +++ K ++ Sbjct: 230 K----YDDMKKELKSEVLEQKLND 249 >gi|77165200|ref|YP_343725.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|254434050|ref|ZP_05047558.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27] gi|122070652|sp|Q3JAF1|SURA_NITOC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|76883514|gb|ABA58195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|207090383|gb|EDZ67654.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27] Length = 426 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 59/435 (13%), Positives = 142/435 (32%), Gaps = 63/435 (14%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 VL F+++ + +++ V V V S + ++ + G + Sbjct: 4 VLVTIFVLFWPIGSFAAINLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQ-GTSLPPGY 62 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L++++L+ LV Q G++ + + R +DN + F + Sbjct: 63 V----LERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRI----AQDNGLTLSQFRN 114 Query: 140 RLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFEN--RSVDY-- 194 L ++G + + ++ K L + + + S +D + + Y Sbjct: 115 VLEQDGYDFPAFRENIRKELIISQLHKREVNDRVSVSKAEIDNFLTNQKKRGNQDAQYHL 174 Query: 195 ----IVLNNRHVPAIADPS----NAVLTQW-----FEKYKDNYRAPEYK----------- 230 I + P + VL Q F+K Y + Sbjct: 175 AHILITVPEAASPEQVQAAKAKAEQVLQQLREGADFQKVAVTYSDGQQALEGGDLGWRKM 234 Query: 231 -RISYILFDVHEKEKKIEISNDE--------LQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 ++ + DV + + +IS ++ + + + ++ + Sbjct: 235 GQLPTLFVDVVPQLQAGDISKLIRSPSGFHIVKLLDYRGEGQQQLVTQTQARHILLRADE 294 Query: 282 EADE---------AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADS 328 A E Q + G F +LA+ ++ +L LG S + ++ Sbjct: 295 LASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQMI-PRFEEA 353 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + SL + G+ + FG+ + V + + + + ++R K E+++ Sbjct: 354 MRSL-EPGEISEPFKTQFGWHVVQVLDRRQENMTE-EFNRNRAKMEIRQRKVEEELENWL 411 Query: 389 KRLEEFLALGTSMDE 403 ++L + + +D Sbjct: 412 RQLRDEAYVEYRLDN 426 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 53/394 (13%), Positives = 123/394 (31%), Gaps = 45/394 (11%) Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ--AKRFYFENRSVDYIVLN---------N 199 +M+ G P +L++ +R E + N Sbjct: 36 LESELEQMVRTVQDQLAAQGTSLPPGYVLERQVLERLVMEQLQLQLAARTGIQVGDETLN 95 Query: 200 RHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKR-----ISYILFDVHEKEKKIEISNDEL 253 + IA + L+Q+ +D Y P ++ + E ++ +S E+ Sbjct: 96 EALGRIAQDNGLTLSQFRNVLEQDGYDFPAFRENIRKELIISQLHKREVNDRVSVSKAEI 155 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLA- 300 K++ + ++ + +A++ Q L++G F ++A Sbjct: 156 DNFLTNQKKRGNQDAQYHLAHILITVPEAASPEQVQAAKAKAEQVLQQLREGADFQKVAV 215 Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + ++L LG +P D + L + GD + +I G+ I + + + Sbjct: 216 TYSDGQQALEGGDLGWRKMGQLP-TLFVDVVPQL-QAGDISKLIRSPSGFHIVKLLDYRG 273 Query: 359 SFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 + +R + + +V+ +L + + G E+++ Sbjct: 274 EGQQQLVTQTQARHILLRADELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASAL 333 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 G G+ + P E+ + + +P G ++ + Sbjct: 334 KGGDLGWVSPGQMI---PRFEEAMRSL----EPGEISEPFKTQFGWHVVQVLDRRQENMT 386 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + K + + K EE+ + QL E Sbjct: 387 EEFN--RNRAKMEIRQRKVEEELENWLRQLRDEA 418 >gi|89100557|ref|ZP_01173417.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911] gi|89084744|gb|EAR63885.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911] Length = 293 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 6/160 (3%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 I L E +I++ DE++A +E+NK+++ E ++ ++ A E L Sbjct: 119 DIEKYLKTEKLLEPRIDLKEDEIKAYFEENKDQFAQQEQVKASHILVEDEATAKEVKSKL 178 Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG++F LA+E S LG F K + + K + + + + Sbjct: 179 DKGEEFADLAKEYSTDASNAESGGELGYFGKGEMEAAFEEAA--FELKANEISGPVKTDY 236 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 GY I V + K + +++ K+ + + + Sbjct: 237 GYHIIKVEDKKEAKEAVYEDSKEAAKKALFDERMQTEYYN 276 >gi|99082756|ref|YP_614910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040] gi|99039036|gb|ABF65648.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040] Length = 283 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 12/172 (6%) Query: 227 PEYKRISYILFDVHEKEKKI-------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 PEY R+S + + D ++ Y+ + ++ + Sbjct: 88 PEYVRLSVEHEQRSLLASDVIEAVMEGAQTEDAIRDAYDARYSSDDGGDEFNASHILLES 147 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++ A E L +G F LA+E S +LG F + + S + G Sbjct: 148 EEAALEIKSQLDEGADFAALAKESSTGPSGPNGGALGWFENGRMV-PEFE-AAISDMRSG 205 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + + + FG+ I +++ + +++V+ +IA ++ +++ + Sbjct: 206 EVSGPVQTQFGWHIIKLNDRRKLEAPEYEDVRDEIAQELAQQAVEDRISQLT 257 >gi|300114054|ref|YP_003760629.1| peptidylprolyl isomerase [Nitrosococcus watsonii C-113] gi|299539991|gb|ADJ28308.1| Peptidylprolyl isomerase [Nitrosococcus watsonii C-113] Length = 426 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 56/443 (12%), Positives = 145/443 (32%), Gaps = 69/443 (15%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + K+ + ++ + W + ++S V V V S + ++ + G Sbjct: 1 MGKVLVAIVVL---FWTMGS-FATMSLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQ-G 55 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L++++L+ LV Q G++ + + R ++N Sbjct: 56 TSLPPGYV----LERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRI----AQNNGL 107 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFE--N 189 + F + L ++G + + ++ K L + + + S +D + N Sbjct: 108 TLSQFRNVLEQDGYDFPNFRENIRKELIISQLHKREVNDRVSVSKAEIDNFLATQKKHGN 167 Query: 190 RSVDY------IVLNNRHVPAIAD----PSNAVLTQW-----FEKYKDNYRAPEY----- 229 + Y I + P + VL Q F+K Y + Sbjct: 168 QDAQYHLAHILITVPEAASPEQVQGAKAKAEQVLQQLREGTDFQKVAVTYSDGQQALEGG 227 Query: 230 ----KRISYILFDVHEKEKKIEISN--DELQA----------EYEKNKEKYFSPEIRTVE 273 +++ + + ++++ +++ EY + + Sbjct: 228 DLGWRKVGQLPTLFVDVVPQLQVGEISKLIRSPSGFHIVKLLEYRGEGGQQLVTQT-QAR 286 Query: 274 QLVFPNQKEADEAFQSLK---------KGKKFIQLAE----EQGKSLSDISLGSFSKEYI 320 ++ + A E L+ G F +LA+ ++ +L LG S + Sbjct: 287 HILLRADELASEQEVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQM 346 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++ SL + G+ + FG+ + V + + + + ++ K Sbjct: 347 I-PRFEEAMRSL-EPGEISEPFKTQFGWHVVQVLDRRQENVTE-EFNRNRAKTEIHQRKV 403 Query: 381 SEKVKEDYKRLEEFLALGTSMDE 403 E+++ ++L + + +D Sbjct: 404 EEELENWLRQLRDEAYVEYRVDN 426 Score = 67.3 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 51/395 (12%), Positives = 121/395 (30%), Gaps = 46/395 (11%) Query: 138 VSRLAREGIN-EKEY--IDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSV 192 +LA +G + Y + L + G++ + L++A R Sbjct: 48 QDQLAAQGTSLPPGYVLERQVLERLVMEQLQLQLAARTGIQVGDETLNEAL-----GRIA 102 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 L + + ++ N+R K + E ++ +S E Sbjct: 103 QNNGLTLSQFRNVLE------QDGYDF--PNFRENIRKELIISQLHKREVNDRVSVSKAE 154 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLA 300 + K+ + ++ + +A++ Q L++G F ++A Sbjct: 155 IDNFLATQKKHGNQDAQYHLAHILITVPEAASPEQVQGAKAKAEQVLQQLREGTDFQKVA 214 Query: 301 ---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + ++L LG +P D + L + G+ + +I G+ I + + Sbjct: 215 VTYSDGQQALEGGDLGWRKVGQLP-TLFVDVVPQL-QVGEISKLIRSPSGFHIVKLLEYR 272 Query: 358 PSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 + +R + + ++V+ +L + + G E+++ Sbjct: 273 GEGGQQLVTQTQARHILLRADELASEQEVQLRLSQLRQRILSGDDFSELAQAHSDDKASA 332 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 G G+ + P E+ + + +P G ++ + Sbjct: 333 LKGGDLGWVSPGQMI---PRFEEAMRSL----EPGEISEPFKTQFGWHVVQVLDRRQENV 385 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + K + K EE+ + QL E Sbjct: 386 TEEFN--RNRAKTEIHQRKVEEELENWLRQLRDEA 418 >gi|324326356|gb|ADY21616.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 283 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFK 274 Score = 41.1 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 44 ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 102 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 130 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 131 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 190 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L + + Y +++ + + +EV ++KD Sbjct: 191 KEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPFDEVKDSIRKDI 240 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V E K+ Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKD 263 Score = 38.4 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|228957422|ref|ZP_04119177.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802255|gb|EEM49117.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 287 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 35/242 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ + + + M + E + ++++ V Sbjct: 35 ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVDDKEVDKK 76 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D + + F+ K E + EK + I++ EL+ Y+ Sbjct: 77 FDETKKQVGDQFDTLLKQQGLKEETFKNMLRAQLAQEKAIEKTITDKELKDNYK------ 130 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 PEI+ ++ ++ A + + L +GK F +LA++ + LG F + Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKM 187 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D+ + L KK + + + FGY I V++IK SF++ K DI ++ K Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKADIKKELVAKKV 244 Query: 381 SE 382 + Sbjct: 245 QD 246 Score = 38.0 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 9/141 (6%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K + +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + ++ Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227 Query: 479 LEEVLTDVKKDWKTVKTAEEV 499 E+ D+KK+ K + Sbjct: 228 FEQSKADIKKELVAKKVQDGA 248 >gi|332665327|ref|YP_004448115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter hydrossis DSM 1100] gi|332334141|gb|AEE51242.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter hydrossis DSM 1100] Length = 702 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 93/720 (12%), Positives = 208/720 (28%), Gaps = 132/720 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI---WGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 + IRK S V I L +L F+I G ++F S ++ + QKV + F Sbjct: 4 ISTIRKNSALIVVLIALGLL--GFIIQDMMGGQSSIFG-SIQPSIGKINGQKVDLNEFN- 59 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKIL-DNLVSGATLDQFIEDIGLEADHGRVWG 117 + E + + G + + L D V A +DQ +G+ + Sbjct: 60 --RTESILYAGSTGDIYA---------RRSALWDYFVEKALIDQEAAKLGIGVSKNELID 108 Query: 118 E--------IARSPLFHGKDNKFSHDVFVSRLAREGI-----NEKEY----IDHYTKMLS 160 I + + S + + Y K Sbjct: 109 LQFGPEPSPIIMQRFMDQTTGQLNRQQLNSLKQQISTNTLPATARSYWAIQEQEIVKDRI 168 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEK 219 +T +V M G+ + + + +++ + + + V A S+ + ++ Sbjct: 169 QTKLVNMVSKGLYTPSWVAEMSQKESATMMDLLFTRIPFDAVDNAEVSVSDEDYANYLKE 228 Query: 220 YKDNYRAPE---------------------YKRISYILFDVHEKEKKIEISNDE----LQ 254 ++ E + L + + + ++ + Sbjct: 229 NPGLFKYDEEARKIGLVTFEVKPTKADSLAQRNKIVGLINDWRQAPNDTVFVEQNLGTID 288 Query: 255 AEYEKNK---------------------------------EKYFSPEIRTVEQLVFPNQK 281 Y K + ++ P+ ++ Sbjct: 289 GAYVKREGLLQFADSIFNLPIGGIFGPYVEGNAYRAVKLLDRKVIPDSVKSRHILIRPDA 348 Query: 282 ---------EADEAFQSLKKGK-KFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADS 328 D ++ GK F +A + G S + LG + + D Sbjct: 349 VTPLAVIKTRLDSIKNVIETGKATFADMALRFGQDGTSTTGGDLGYTALGGMVKP-YNDL 407 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE--KVKE 386 IF A++G V FG + V+ K + S V I ++ +K +E + +E Sbjct: 408 IFFQAEQGKLYTV-ETQFGAHLVEVTGKKVTSNASGVRV-AYIGEVIKPSKETENRRFEE 465 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + L ++ +++ K ++ + A + G + + +++ FG Sbjct: 466 AQRFLNANNKDVETLLAAAKKVKGLTQETSAAVNANEFFLGS-LGSGQQPREIIRWAFGA 524 Query: 447 DDPLSKDHTVALPD------GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 D Y+ +K + ++V D++ ++ Sbjct: 525 QKGQVAPDIYTFTDATEFYTNKYVLAGLKAVLGPGRATADQVKEDIETAV--------IN 576 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQ-VFSGPV 557 K +L+ E K GK + + T + + N ++ F Sbjct: 577 RKKGELIAEKLK-GKQVQAAAAQYSVKVDTLRNVRFNQSFLPNNVGSEPRLNAYAFKLKQ 635 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 I YVV + S + ++ + L+ + + + + ++ Sbjct: 636 GQTSQPIIGANGVYVVNAQSISTPNSATDLNQLKTTLSGNARAQVSNRFMPAFRKSAKIS 695 >gi|217978662|ref|YP_002362809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella silvestris BL2] gi|217504038|gb|ACK51447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella silvestris BL2] Length = 322 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 4/173 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y ++ + + K ++++ ++ Y+ + ++ +A+ + Sbjct: 125 YYHEKLLMETLLGQVAKAALTDEAIKKTYDDALKAQKPETEVHARHILVATDADAEAVLK 184 Query: 289 SLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LK G++F ++A+E K LG F+K+ + A++ F L + G + + F Sbjct: 185 RLKAGEEFAKVAKEVSKDTSADGGDLGWFTKDKMV-PEFAEAAFKL-EPGQLSAPVKSPF 242 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 G+ I V + + EVK ++ + E V K + A Sbjct: 243 GWHIILVEGKREKPFPALDEVKDQVSRYVVQKAQGELVAGLRKDAKIERAEPE 295 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 + + VL+ K G+ F + K + ++K + F Sbjct: 174 ATDADAEAVLKRLKAGEEFAKVAKEVSKDTSADGGDLGWFTKDKMVP-EFAEAAFKLEPG 232 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+++ + + V + P D+ +++ + + ++A L+ + Sbjct: 233 QL-SAPVKSPFGWHIILVEGKREKPFPALDEVKDQVSRYVVQKAQGELVAGLRKDAKIE 290 >gi|217969876|ref|YP_002355110.1| SurA domain protein [Thauera sp. MZ1T] gi|217507203|gb|ACK54214.1| SurA domain protein [Thauera sp. MZ1T] Length = 438 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 54/431 (12%), Positives = 129/431 (29%), Gaps = 68/431 (15%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 I + + + + A +V V V + + +Q ++++ G + Sbjct: 12 IAIGLAATTLALP-VHSAPRAVEVDRIVAVVNNEVITGLELRARIEQTRRQLARQ-GAQL 69 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 E L +++L+ L+ Q + L D + I R +NK S D Sbjct: 70 PPEEV----LQRQLLERLIVERAQLQLARESSLRVDDVTLDRAIERIAS----NNKLSID 121 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVG------MFVGGMRPSNLLLDQAKRFYFEN 189 + L ++G+ + D + T + + V N + + F + Sbjct: 122 QLRATLEKDGVTWSRFRDEIRSEILLTRLREREVDSRIVVTDAEIDNFIANNPDAFSGQE 181 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD----------- 238 +V +I+L + + + E+ R+ E Sbjct: 182 FAVAHILLRTPEGASPQQV--EAVARRAEQVMARLRSGEDFARVAAEVSDAPDGLQGGSL 239 Query: 239 --------VHEKEKKIE-----ISNDELQAEYEKNKEKYFSP-----------EIRTVEQ 274 + ++ L++ + + E Sbjct: 240 GWRPLDRLPALFADAVRRMRPGETSPVLRSAAGLHIVRLVDARGGGAAAVQKLEQTRARH 299 Query: 275 LVFPNQK---EADEAFQSLK------KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322 ++ + +AD + L G F +LA+ LS LG + Sbjct: 300 ILIKTSEVLSDADAEARLLAIRERVVNGADFAELAKASSADLSAARGGDLGWLNPGDTV- 358 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++ +L + G+ + + FG+ + + + + + +R KA + Sbjct: 359 PEFERAMNAL-RPGEVSAPVRSPFGWHLIQLVERRMQDVTD-ERKRAAARQALRERKAEQ 416 Query: 383 KVKEDYKRLEE 393 ++ ++L + Sbjct: 417 AYEDWLRQLRD 427 >gi|224538711|ref|ZP_03679250.1| hypothetical protein BACCELL_03605 [Bacteroides cellulosilyticus DSM 14838] gi|224519679|gb|EEF88784.1| hypothetical protein BACCELL_03605 [Bacteroides cellulosilyticus DSM 14838] Length = 712 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 87/733 (11%), Positives = 209/733 (28%), Gaps = 138/733 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + + + + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGESLSAQDYQSLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G ++ + + ++ N V+ ++ + +GL + I Sbjct: 61 EYTEVVKFSRGTSALTDE-ENNQIKDEVWRNYVNNKLIENEAKKLGLSVSKAELQSIIDA 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRL------AREGINEKEYIDHY----------TK 157 + F F D+ L + +Y ++Y K Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNTAQM-PAQYAEYYQSMYKFWSFLEK 178 Query: 158 MLSRTDVVGMFVG----GMRPSNLLLDQAKRFYFENRSV------------DYIVLNNRH 201 L +T + + + + + A + + + + + Sbjct: 179 QLVQTRLAEKYQALVSKSLFSNPVEAQDAFNARADQSDMLLAAIPYSSIVDSTVTITDAD 238 Query: 202 VPAIADPSNAVLTQWFEKYKDNYR------APEYK------------------------- 230 + A D Q+ E + +PE + Sbjct: 239 LKAAYDKKKEQFKQYVETRNIKFIDVQVTASPEDRDAIQQEVMEYTEQLAGTPGDYSTLV 298 Query: 231 -----RISYILF---------DVHEKEKKIEI----------SNDELQAEYEKNKEKYFS 266 + YI DV + + + +++ + + K Sbjct: 299 RAAGSEVPYIDLYYTSKALPTDVAARLDSVSVGGVYGPYYNATDNTINSF--KKLATASM 356 Query: 267 PEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 + Q+ + A D + ++K G F ++A++ G++ + IS ++ Sbjct: 357 ADSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGA 416 Query: 319 YIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + +L ++I +L K ++ + +I V + K VK + Sbjct: 417 QLDGDNLKYVNTITTLGKNEMTN--LNLAQANIIVQVMDKKA--------VKDKYKVAVI 466 Query: 377 I---TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + E + Y +F+A +++++ + L +D + I Sbjct: 467 KRPVEFSKETYSKAYNEFSQFIASNPTLEKMVANAEDAGYKL--LDRNDLYSSEHGIGGI 524 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 ++ L F + V + +PA R L V ++ + Sbjct: 525 RGTKEALRWAFSAKTGEVSGLYECGESDRMLVVGVSAIVPAGYRPLALVKDQLRLELLRD 584 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDGI 549 K KA +++ + G D K + ++ + + + Sbjct: 585 K-------KAEKIMADMKAAGATSFDQFKAMPEAVSDSVKHVTFAAPAYVPVLRASEPLV 637 Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 S PI+ V + + Q M+ + + Sbjct: 638 GAYASIAELNQLSAPIKGNGGVFVLQPYAKDKLNETFNQETEETTLQNMHARMASQFLND 697 Query: 610 LKSQYSVTVHDNL 622 L + V + L Sbjct: 698 LYLKADVKDNRYL 710 >gi|313679080|ref|YP_004056819.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] gi|313151795|gb|ADR35646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus profundus DSM 14977] Length = 621 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 84/662 (12%), Positives = 171/662 (25%), Gaps = 146/662 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMIS 68 I +L F I + LF+ G+ ++ V Q + + + Sbjct: 8 ITIIFGILAAAFAIGTI--FLFTPQGNPQQEGRPILYVNGQPINELELMRKAQTNPL--- 62 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 F +N +D L+ +++ L Q + V ++ + + Sbjct: 63 ----FTLNPTGVLRPLIDTYFLEQVITLEALRQDAAR--IRVSSSEVKQQVDQ---LRER 113 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 + + L G + + D L + Sbjct: 114 LGVTDREGYDRFLQSIGYTDSQLRDEIRTQLRIQKRI----------------------- 150 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 + ++ ++E +K Y A + + Sbjct: 151 -----------DELRKKVKLTDEEARFYYELHKGEYAAEDRVKA---------------- 183 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--S 306 Q+V +Q AD+ ++ L G F +LA + K + Sbjct: 184 ------------------------RQIVLDDQATADQVYKQLIGGADFAELARQYSKVGA 219 Query: 307 LSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++G+ P +AD++F L K G T VI Y I V P Sbjct: 220 EQGGAVGAEPGSSEPGPVTRLVFPTPVADAVFQL-KSGGMTEVIETGGRYYIVKVEEFLP 278 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI----- 413 V ++EV + + K + V+ + + + + + ++I K + Sbjct: 279 GGDVPYEEVADRVKSDALSVKQNGAVENYIREVRDRAVVKFTEEQIPYEYKNPDVAKVGD 338 Query: 414 ----------------DLPLVDFAGKDVKGKEVAAIPYKEQ------LLFRVFGKDDPLS 451 +P + G +Q LL + +P Sbjct: 339 KTIKLADVIQVVFSDQQVPQLIQQGLGELAVSFFFPAATDQLITEELLLQQAEASGEPFI 398 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEE---VLTDVKKDWKTVKTAEEVSSKANQLVL 508 D + P R E + + + A++ Sbjct: 399 GTRAQKAQDVQLWKTKDVTVTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFRE 458 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ----VFSGPVEMVKCFP 564 + G ++ K LG + +N + +G + + Sbjct: 459 KLI-AGDPLEELAKGLGGQVSDLGTVNPGSGLPPVVEQLVFATDADYARAGDWGVSEVVE 517 Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFIS-------YLTQMMNKDLLDSVIAYLKSQYSVT 617 + + + V K + K F + L I LK Q V Sbjct: 518 LPGQDNQKTYMVVLVKDKKAEVKKPFEAVKAEAEQLALAAKRAKLAAEWIDQLKQQAGVE 577 Query: 618 VH 619 + Sbjct: 578 NN 579 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 14/206 (6%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 K + ++ DE++A YE+N ++ P TV+ + F +++ AD+ + L G +LA+ Sbjct: 414 KDVTVTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFREKLIAGDPLEELAKGL 473 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSL----AKKGD--FTPVIH-----GSFGYVIAH 352 G +SD LG+ + + +F+ A+ GD + V+ Y++ Sbjct: 474 GGQVSD--LGTVNPGSGLPPVVEQLVFATDADYARAGDWGVSEVVELPGQDNQKTYMVVL 531 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V + K F+ VK + K ++ E +L++ + ++ ++ Sbjct: 532 VKDKKAEVKKPFEAVKAEAEQLALAAKRAKLAAEWIDQLKQQAGVENNIVDVLGSL-APK 590 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + P A + A + Sbjct: 591 TEEPATQQAPDQGAPETPAPAEAQPA 616 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 21/207 (10%) Query: 356 IKPSFTVSFQE---VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + P ++ E + I + S K KE + E L G ++E+++ Sbjct: 418 VTPDEVRAYYEENPARFSIPASATVKTVSFKDKETADKFREKLIAGDPLEELAKGLGGQV 477 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV---FGKDDPLSKDHTVALPDGS----YMW 465 DL V+ P EQL+F + + V LP YM Sbjct: 478 SDLGTVNPGSGLP--------PVVEQLVFATDADYARAGDWGVSEVVELPGQDNQKTYMV 529 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 V +K+ + E V + ++ K A+ + +QL + E +G Sbjct: 530 VLVKDKKAEVKKPFEAVKAEAEQLALAAKRAKLAAEWIDQLKQQAGVENNIVDVLGS--- 586 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQV 552 + T + + ++ Sbjct: 587 LAPKTEEPATQQAPDQGAPETPAPAEA 613 >gi|52143135|ref|YP_083692.1| peptidylprolyl isomerase [Bacillus cereus E33L] gi|51976604|gb|AAU18154.1| protein export protein [Bacillus cereus E33L] Length = 283 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKI-- 246 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 Query: 247 ------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILIKDEKTAKEVKEKVSNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGQVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + EVK I + + + + +++ L + + K Sbjct: 225 E--LKPYDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIKVNDKDFK 274 Score = 40.7 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 52/148 (35%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E ++ G ++++ + Sbjct: 126 DVKDNYKPEMKVSHILIKDEKTAKEVKEKVSNGEDFAALAKQYSEDTGSKEQGGEITGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPVKTTY--------GYHIIKVTDKKE--LKPYDEVKDQ 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q+V + K+ Sbjct: 236 IRKDLEQQRLQDTTGKWKQQVVNDLLKD 263 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVSNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD+ L Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPYDEVKDQIRKDLEQQRLQDTTGKWKQQVVNDLLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 >gi|167766953|ref|ZP_02439006.1| hypothetical protein CLOSS21_01470 [Clostridium sp. SS2/1] gi|167710928|gb|EDS21507.1| hypothetical protein CLOSS21_01470 [Clostridium sp. SS2/1] Length = 247 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + E K I +S +E + Y+ N+ ++ + E + ++ ++ + E + + + Sbjct: 84 MALGEAMKDITVSEEEAKEYYKANENQFMAGETVHAKHILVDDEDKCQEILEKIIGEETT 143 Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A+E S LG+F + + D+ F+ A+ G + FGY + Sbjct: 144 FEDAAKEFSTCPSKEKGGDLGAFGRGQMVK-EFEDAAFA-AEVGHVVGPVKTQFGYHLIK 201 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + K + T +++V I N + K ++ L+E Sbjct: 202 VEDKKDAETSVYEDVADTIKNIILQQKRNDVYGNKIAELKEK 243 >gi|149175489|ref|ZP_01854110.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797] gi|148845757|gb|EDL60099.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797] Length = 856 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 87/675 (12%), Positives = 207/675 (30%), Gaps = 128/675 (18%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE------ 63 R + +V + + F + G+ TVV+ + + + Sbjct: 94 RGKGTQFAVVGIIIGFF---VGYLYIPKVGAETVVTSTAGDIDMRQYQEMVQNRQIANQF 150 Query: 64 -----LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + ++++ R G +++ D+++ + E + L V Sbjct: 151 IMRSYMASLTEEEQQRPQPPRGAMFGFGREMEDDIILEYLFRKEAEKMNLIVSDDAVSNY 210 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 I+ +NK S F + G E + D + L M + + Sbjct: 211 IS-----RYTNNKLSRKAFQETCQQLGKTEGQIYDIFRDQLQARLAFQMLRPEVSLTPDQ 265 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNY-----------RA 226 + + ++ + L + PS+A +FE YK + R Sbjct: 266 YWNFYKKFNVREELELVALPVKDFEGEVPAPSDAEKKAFFETYKTVFPGEKGPGSPGLRQ 325 Query: 227 PEYKRISYILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIR----------TVEQL 275 P+ ++ Y++ D + EK++ I++ E+ A YE NKE+ + T +L Sbjct: 326 PQKVQVEYLMADYVDTEKQVPPITDKEIAAFYEDNKERLYKNNPIPDLPAGSTVPTAPEL 385 Query: 276 VFPNQKEADEAFQSLK--KGKKFIQ-LAEEQGKSLSDISLGSFSKEYIPDVSLADS---- 328 P+ + ++ ++ K G+K + A++ + + + +K P AD+ Sbjct: 386 PAPSGPKTEKPTEAAKPGAGEKPAEKPAKKPAATPAKTE--TPAKPETPAKPKADTKPEP 443 Query: 329 ----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT----------------------- 361 KK + + + S + + + KP+ T Sbjct: 444 ESKPEPKTEKKEESSALAAESITF--VSLLDEKPADTPVVAPKPGAETAGAKPEATTTAP 501 Query: 362 VSFQ-------EVKKDIANQMRITKASEKVKEDY-------KRLEEFL---ALGTSM--- 401 + ++K +I +Q+ + + +K+ L + + G ++ Sbjct: 502 PPLEPYRPLNDDLKSEIRDQLLRERTLDLMKDKISEAVLFMNELSDKITNPEEGATVPTP 561 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVA-----AIPYKEQLLFRVFGKDDPLSKDHTV 456 +E ++ K + L+ + +E++ + ++ F + + Sbjct: 562 EEATKTLKEYAAKHQLIYNITPMMSAQEMSESEKYPLGTAKEPTINQFAAQPRTAIEQLF 621 Query: 457 ALPDG-SYMWVQIKE-------------SIPARDRKLE--EVLTDVKKDWKTVKTAEEVS 500 P +Y+ + ++ + A + + E+ + + K K Sbjct: 622 ETPVNLTYIPYEAEDSFSSGLLCYWKIKHVDATIPEFDDPEIDQQITEQLKLEKARPLAQ 681 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV-----FSG 555 + +L + G + F + S FS Sbjct: 682 KRGEEL--KKLISGDKEMAAAIEGQTITGKKEGTELSTTTTESFSWMRTSTANASNPFSM 739 Query: 556 PVEMVKCFPIENGLS 570 P + G Sbjct: 740 PRPELSSISAVEGAG 754 >gi|317499572|ref|ZP_07957835.1| ppic-type ppiase domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291559696|emb|CBL38496.1| Parvulin-like peptidyl-prolyl isomerase [butyrate-producing bacterium SSC/2] gi|316893121|gb|EFV15340.1| ppic-type ppiase domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 247 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + E K I +S DE + Y+ N+ ++ + E + ++ ++ + E + + + Sbjct: 84 MALGEAMKDITVSEDEAKEYYKANENQFMAGETVHAKHILVDDEDKCQEILEKIIGEETT 143 Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A+E S LG+F + + D+ F+ A+ G + FGY + Sbjct: 144 FEDAAKEFSTCPSKEKGGDLGAFGRGQMVK-EFEDAAFA-AEVGHVVGPVKTQFGYHLIK 201 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + K + T +++V I N + K ++ L+E Sbjct: 202 VEDKKDAETSVYEDVADTIKNIILQQKRNDVYGNKIAELKEK 243 >gi|115522177|ref|YP_779088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] gi|115516124|gb|ABJ04108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] Length = 309 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 9/177 (5%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K + D ++ YE ++ ++ + EA + LKKG F +LA+++ Sbjct: 124 KAAATGDAMKKVYEDAAKQIAGEPEVHARHILVETEDEAKAVVEELKKGADFAELAKKKS 183 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+K+ + + + F+L + G + + FG+ + V + Sbjct: 184 KDPGAADGGDLGFFTKDQMV-PEFSTAAFAL-EPGKVSEPVKSQFGWHVIKVEEKRNRKA 241 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISRREKIVSID 414 F +VK I + ++ V + + + A +D+ +K Sbjct: 242 PDFDQVKGQIETYVARKAQADYVTKLRAEAKIERLDKPAEPAKVDDAKAGDKPADAK 298 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 1/114 (0%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563 + V+E K+G +F ++ K + + + + F+ V Sbjct: 162 AKAVVEELKKGADFAELAKKKSKDPGAADGGDLGFFTKDQMVPEFSTAAFALEPGKV-SE 220 Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P+++ + V KV + + D+ + + + + L+++ + Sbjct: 221 PVKSQFGWHVIKVEEKRNRKAPDFDQVKGQIETYVARKAQADYVTKLRAEAKIE 274 >gi|254491890|ref|ZP_05105069.1| SurA N-terminal domain family [Methylophaga thiooxidans DMS010] gi|224463368|gb|EEF79638.1| SurA N-terminal domain family [Methylophaga thiooxydans DMS010] Length = 421 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 51/403 (12%), Positives = 125/403 (31%), Gaps = 62/403 (15%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V + + S + + + Q+ + SE L+K++L+ L+ Q Sbjct: 25 AVVNDEVILESELMEMQQTVRQQLRQRDAAIPPSEV-----LNKQVLERLIMQRLQLQRA 79 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 E +G+ + + + +N + F L +G N + + + + T Sbjct: 80 EQVGVRVGDDALNAALKQIAN----NNNMNLRQFRDVLEDDGYNFSNFRNTIREEMIITR 135 Query: 164 VV-GMFVGGMRPSNLLLDQA--KRFYFENRSVDY------IVLNNRHVPAIADPSNAVLT 214 + + S +D + E V+Y + + P + L Sbjct: 136 LRKSQVEDRVVVSEREVDNFLTTQTIQEGGEVEYQLQHILVSMPEAASPEQVQEAEQQLQ 195 Query: 215 QW----------------FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY- 257 + + ++ E + E ++ E+ Sbjct: 196 KVQALLDEGGEFSEVAAGYSDGQNALEGGELGWRKHGELPSLFAEVVPDLEVGEVSQALR 255 Query: 258 -----------EKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFI 297 +K ++ + ++ ++ + Q + KG+ F Sbjct: 256 SGSGFHLVRVKDKKSQELHLVKQTLASHILIRANELTSAEQAEERLQQLRQRIAKGENFA 315 Query: 298 QLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA + G ++ SLG S + + + +LA G+ + V FG+ + V Sbjct: 316 ELARAHSDDTGSAIDGGSLGWTSPGVMV-PEFEEKMNALA-IGEMSDVFESRFGWHLIKV 373 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + + + Q+R K E+++ + + + Sbjct: 374 YDRREQNMAD-EFKRNKAREQIRQRKIDEELESWLRAMRDEAY 415 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 24/241 (9%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 N+R + + + E ++ +S E+ + ++ ++ Sbjct: 119 NFSNFRNTIREEMIITRLRKSQVEDRVVVSEREVDNFLTTQTIQEGGEVEYQLQHILVSM 178 Query: 280 QKEA-----DEAFQSLKK-------GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVS 324 + A EA Q L+K G +F ++A +L LG +P S Sbjct: 179 PEAASPEQVQEAEQQLQKVQALLDEGGEFSEVAAGYSDGQNALEGGELGWRKHGELP--S 236 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK----A 380 L + + G+ + + G+ + V + K VK+ +A+ + I + Sbjct: 237 LFAEVVPDLEVGEVSQALRSGSGFHLVRVKDKKSQE---LHLVKQTLASHILIRANELTS 293 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 +E+ +E ++L + +A G + E++R + G G V K L Sbjct: 294 AEQAEERLQQLRQRIAKGENFAELARAHSDDTGSAIDGGSLGWTSPGVMVPEFEEKMNAL 353 Query: 441 F 441 Sbjct: 354 A 354 >gi|323490390|ref|ZP_08095605.1| foldase protein PrsA [Planococcus donghaensis MPA1U2] gi|323396060|gb|EGA88891.1| foldase protein PrsA [Planococcus donghaensis MPA1U2] Length = 288 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 22/228 (9%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----------------YKRISYILFDV 239 V+N A + + + Y++ Y E + + L Sbjct: 63 VVNQEAEKAEVEVTQEEIDAEMAVYEEQYGGAEGLEQALASSGMSIADLEEEMKTYLKVE 122 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 IEI+++++ +E+NKE + ++ Q+EADE L G F +L Sbjct: 123 KIIGPDIEITDEQISTYFEENKETFAQASKVEANHILVETQEEADEVKAKLDDGDDFAEL 182 Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A E S +LG F + ++ FSL K + + + +G+ I V+ Sbjct: 183 AAEYSVDTSNAEDGGALGEFGAGEMT-PEFEEAAFSL-KVDEISDPVETDYGFHIIQVTG 240 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + + ++ K+ I + + + E + + E Sbjct: 241 KTEATEANLEDSKEQIKETLFDEALNTQYAAWLAEKTESYNIVNELAE 288 >gi|289434727|ref|YP_003464599.1| protein export protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170971|emb|CBH27513.1| protein export protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 293 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 27/232 (11%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------------RA 226 +A + + N V + + + + + ++KY++ Y + Sbjct: 42 EAMKTTYGNEVVQQLTFE-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLASSNLTKT 100 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + I Y L E I++S+ L+ Y+ + P+I TV ++ ++ A E Sbjct: 101 SFKENIKYNLLVQKATEANIDVSDSTLKKYYKT-----WQPDI-TVRHILVDDEATAKEV 154 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIH 343 LK G+KF LA+E + + G + D + + ++L K D + ++ Sbjct: 155 QTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEKAAYALEKTDDVSGIVK 214 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKASEKVKEDYKRLE 392 S+GY + + T S + K I +Q+ + +K++ K Sbjct: 215 TSYGYHLIQLVKKTDKTTYSKDKAKVKEAYIQSQLTSENMTAALKKELKAAN 266 >gi|298206782|ref|YP_003714961.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus HTCC2559] gi|83849414|gb|EAP87282.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus HTCC2559] Length = 652 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 87/672 (12%), Positives = 220/672 (32%), Gaps = 101/672 (15%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + LI G + + ++++ + V S F+ +++ L ++ + V+ Sbjct: 7 LFVFCLLIAG--NTIAQELDKQIIMTLDGEPVYASDFVRVYQKNLDLVQDESQKDVD--- 61 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + L + + + GL + F + + + + Sbjct: 62 --------EYLKLFIDYRLKLREAYEQGL---DTTLK--------FQREFKTYRNQFARN 102 Query: 140 RLAREGINEKEYIDHYTK---MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 L ++E + Y + ++ + ++ P + L + Y + + + Sbjct: 103 FLTDNNVSEALVQEAYDRTVNEVNASHILIRVNQNATPEDTL-----KAYSKIKDIREKA 157 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DEL 253 +N R +A + + +K ++ Y + ++S Sbjct: 158 VNGRSFETLAKTYSEDPSA--KKNGGELGWFTALKMVYAFEEQAYTVPVGDVSEPFRTRF 215 Query: 254 QAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K ++ S V + VF + +E + +K+G+ F LA++ Sbjct: 216 GYHILKVNDRRASAGEVEVAHIMVSPKPKDTVFNPKDRIEELYLKVKQGEDFGVLAKQFS 275 Query: 305 KSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + L F + FSL K G T +G+ I + + P Sbjct: 276 DDRNSARREGKLDRFGSGKLNSEVFEKKAFSLTKAGQVTEPFETQYGWHIIKLIDRFP-- 333 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVD 419 SF E++ ++ ++ + + + L++ ++G + S V+ D+ + Sbjct: 334 IPSFNEMRGELEKKVTKDSRANLISDALVAGLKDHYSIGDFSEAKSFFSAYVTKDVKDGN 393 Query: 420 FAGKDV---------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 +A D K ++ A Y +Q+ + G + + DG + Sbjct: 394 WAISDNSTLDQPLFKLRDSVFKYRDFAKFIYNKQVNKGLSGDKNTAINNWLKEYVDGKVL 453 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE---VSSKANQLVLEY----------- 510 ++ + D++ ++++ + E +K + L L+ Sbjct: 454 AYH-RDHLEQEDKEFSNIVSEYRDGLLLFDLMEMNIWNKAKKDTLGLKTYYETNKQNYLW 512 Query: 511 -SKEGKNFRDIGKNLGASLLT---TNQINRMDNENKFFGYDGISQVFSGPVEMV------ 560 + + A + ++ +D +++ + ++ +FS V Sbjct: 513 DKRVNVTMAKVNNKTDAKKVRNLMKKGVSEVDVKSQINSDESMTTLFSNGTFNVEDEVLP 572 Query: 561 KCFPIENGLS--------YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 K I+ G+S Y V + + + + + L + IA L++ Sbjct: 573 KKLKIKQGISKVYEEDNYYTVVNIKDVLPAGPKTFKEAKGTIVSDYQDYLEKNWIAALRT 632 Query: 613 QYSVTVHDNLIQ 624 +YSV ++D+ + Sbjct: 633 KYSVNINDDTVN 644 >gi|325479410|gb|EGC82506.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus prevotii ACS-065-V-Col13] Length = 248 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 5/160 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +H+ ++I++ + E++A YEKNKE P + ++ + +EA + + +++G +F + Sbjct: 85 MHKIFEEIKLDDSEIKAYYEKNKENLNPPLLYEASHILVKDLEEASKIKKEIEEGLEFSE 144 Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A++ S SLG F K + + + S+ + G + + FGY + + N Sbjct: 145 AAKKYSIDPSKDNGGSLGKFPKGVMVK-EFQEGLDSI-EVGQISEPVKSQFGYHLIKLEN 202 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 I+ T S+ E+K + ++ + K E +++ + Sbjct: 203 IENVETPSYDEIKDQVKQRVLMIKRQEAYLNKLDEIKKDI 242 >gi|229171802|ref|ZP_04299374.1| Foldase protein prsA 1 [Bacillus cereus MM3] gi|228611699|gb|EEK68949.1| Foldase protein prsA 1 [Bacillus cereus MM3] Length = 289 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 17/220 (7%) Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226 F M+ S E + ++++ V D + F+ K Sbjct: 41 FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFDTLLKQQGLK 100 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E + EK + I++ EL+ Y+ PEI+ ++ ++ A + Sbjct: 101 EETVKNGVRAQLAQEKAIEKTITDKELKDNYK--------PEIK-ASHILVKDEATAKKV 151 Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + L +GK F +LA++ + LG F + D+ + L KK + + + Sbjct: 152 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPV 209 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 FGY I V++IK SF++ K DI ++ KA + Sbjct: 210 KSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKAQD 248 Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 55/260 (21%) Query: 247 EISNDELQAEYEKNKEKYFSPEI---RTVEQLVFP----NQKEADEAFQSLKK--GKKFI 297 +I+ +E YE+ K + +E+++ + KE D+ F +KK G +F Sbjct: 35 DITKEE---FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFD 91 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++QG + G ++ ++ +I Sbjct: 92 TLLKQQGLKEETVKNGVRAQ-----LAQEKAI---------------------------- 118 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 T++ +E+K + +++ + K + K+++E L G S +E++++ + Sbjct: 119 -EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEK 177 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G GK V L + + S+ Y +++ + ++ Sbjct: 178 GGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EK 228 Query: 478 KLEEVLTDVKKDWKTVKTAE 497 E+ D+KK+ K + Sbjct: 229 SFEQSKADIKKEIVQKKAQD 248 >gi|27368132|gb|AAN87191.1| LipA [Bacillus cereus] Length = 248 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 28/206 (13%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 48 YQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDELKEKMKPEIAF 107 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 108 EKAIKATVTEKDVKNNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 158 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 159 KQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKL-DAGQVSDPVKTTYGYHIIKVTDKK 217 Query: 358 PSFTVSFQEVKKDIANQMRITKASEK 383 F EVK+ I + + ++ Sbjct: 218 E--LKPFDEVKEKIRKDLEQQRLQDR 241 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 82/248 (33%), Gaps = 44/248 (17%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 37 ELRQQYGESTLYQMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED- 95 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 96 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKNN 123 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 124 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 183 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 L D + Y +++ + + +EV ++KD Sbjct: 184 KEFEEAAYKLDAGQVSDPVKTTY--------GYHIIKVTDKKE--LKPFDEVKEKIRKDL 233 Query: 491 KTVKTAEE 498 + + + Sbjct: 234 EQQRLQDR 241 >gi|224825281|ref|ZP_03698386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602202|gb|EEG08380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 258 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 77/178 (43%), Gaps = 12/178 (6%) Query: 225 RAPEYK-------RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 ++PEY+ ++ + + ++ +S+ +L+AEY+K K ++ + ++ Sbjct: 79 KSPEYRAELENMQTMALASRLIKDFQRSNPVSDAQLRAEYDKIKSQFPEKKSYHARHILV 138 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 P + EA +L+KGK F QLA+E+ LG ++++ LA Sbjct: 139 PTEAEAKAVIDALRKGKAFDQLAKEKSIDPGSKNNGGDLGWSEASNFV-APFSEAMTKLA 197 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K + + FG+ + + +++ ++++ + ++ + + + + + Sbjct: 198 KGQVTSEPVKTEFGWHVIKLDDVRTEAAPPVEQIRPQLEQRIMSGRIEKFISDLKAKA 255 >gi|120556415|ref|YP_960766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] gi|120326264|gb|ABM20579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] Length = 447 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 52/426 (12%), Positives = 134/426 (31%), Gaps = 91/426 (21%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 ++L + ++ ++ V V + + S +G +S + G + Sbjct: 11 ILLTLAMVVLSVTAQAERKLLDRVVAIVDDEVILQSELDARINTIVGRLSAQ-GTGLPPR 69 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 L++++LD L+ + Q + +G+ + +A Sbjct: 70 EL----LEQRVLDQLIQESLQLQMADQMGMRISDNELNETLANIA--------------- 110 Query: 139 SRLAREGINEKEYIDHYTKM-LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 G+ E+ + ++ M S + + R V Sbjct: 111 ---RSNGMTLAEFEGQLAEEGVTYQQAREQIRNEMLTSRV----------QQRRV----- 152 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 ++ + + + + N R++YI +V + + + Sbjct: 153 -----GNRVRVTDREVENYLQAQQANGSTDAEYRLAYIFIEVDDPASEASVDEA------ 201 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGS 314 ++ A Q + G+ F ++A + +L +G Sbjct: 202 ----------------------RETAQALRQQIANGRDFREVAVAESDASNALEGGDMGW 239 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-------- 366 S+ +P SL + + G+ + V+ + G+ + V + + F + Sbjct: 240 RSESQLP--SLVAPVVPDLEVGEPSQVLENNSGFHLVMVMDKRGGEQQQFIQQHRVRHIL 297 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 V+ + + +A ++++E Y++L++ G +++R + G Sbjct: 298 VRP--SEAVTDVQAEQRIREIYQQLQD----GADFADLARERSDDPVSGSDGGNLGWVSP 351 Query: 427 GKEVAA 432 G+ V A Sbjct: 352 GQMVPA 357 >gi|169343240|ref|ZP_02864251.1| putative foldase protein PrsA [Clostridium perfringens C str. JGS1495] gi|169298538|gb|EDS80619.1| putative foldase protein PrsA [Clostridium perfringens C str. JGS1495] Length = 326 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 105/356 (29%), Gaps = 73/356 (20%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL---DKKILDNLVS 95 +TV +V +K+ + K + + G + + + + ++ LV+ Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L + +G++ + ++ F D F L EG E + D Sbjct: 78 DKVLGIEADKLGIKPSEEEIKKKV--DEQFENIKKGM-GDNFDKALEAEGYTEDTFKDVI 134 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + V + ++ + Sbjct: 135 KNQVINQAVQDYII----------------------------------KDVKVTDEDAQK 160 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++++ K + A + ++ L + +E Q Y++ + + Sbjct: 161 YYDENKQQFVAKDSGVLTKHLLFEN---------EEEAQKAYDEIQSGKTTF-------- 203 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 ++ F + K + K +LG E V K+ Sbjct: 204 --------NDLFTKYENNKS-------ENKKPIAENLGVVPAENSGLVQEFVDGLKPLKE 248 Query: 336 GDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + +I FGY I + + F EVK I ++ K SEK K D + Sbjct: 249 GEISKLIKTQFGYHIIQAGATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKADMDQ 304 >gi|150397715|ref|YP_001328182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae WSM419] gi|150029230|gb|ABR61347.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae WSM419] Length = 284 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 4/147 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ +E++A Y+K E ++ + EA + L GK F +LA+ + Sbjct: 115 AVTPEEVKARYDKEIAAIPPQEEVKARHILVKTEDEAKAVIKELDAGKNFAELAKAKSTD 174 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + LG F+K + + F+L K + FG+ + V + +P + Sbjct: 175 PNKDEGGDLGYFTKGRMV-PEFETAAFALEKGAYTKTPVKTQFGFHVILVEDKRPQAPPT 233 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 ++V+ + + + E + + Sbjct: 234 LEQVEPQVRQLVMRDRYLELLNSAKES 260 Score = 37.3 bits (85), Expect = 7.5, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%) Query: 365 QEVKKDIANQMRITKASEKVK---------EDYKRLEEFLALGTSMDEISRREKIVSIDL 415 +EVK ++ E+VK ++ K + + L G + E+++ K + Sbjct: 119 EEVKARYDKEIAAIPPQEEVKARHILVKTEDEAKAVIKELDAGKNFAELAKA-KSTDPNK 177 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 G KG+ V + F + V G ++ + +++ P Sbjct: 178 DEGGDLGYFTKGRMV------PEFETAAFALEKGAYTKTPVKTQFGFHVIL-VEDKRPQA 230 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 LE+V V++ + E ++S +E Sbjct: 231 PPTLEQVEPQVRQLVMRDRYLELLNSAKESTAVEI 265 >gi|289642554|ref|ZP_06474697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of Datisca glomerata] gi|289507642|gb|EFD28598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of Datisca glomerata] Length = 391 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 10/189 (5%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +++D+L + YE ++ + P R + +V ++EAD+ + + G F LA E Sbjct: 172 ATVTDDQLPSYYESHRADFAVPAQRHLRNIVVATREEADQVVRRARDGADFAALAGETSL 231 Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG + + D A + F++ G + +G+ + V +P+ Sbjct: 232 DESTRSSQGDLGFVTASQL-DAEYAKAAFAVP-VGSVFGPVQTRYGWNVGQVLEDRPASQ 289 Query: 362 VSFQEVKKDIANQMRITKA----SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 SF++VK + + +R +A + + + + A + S LP Sbjct: 290 PSFEQVKDQVRDALRSERAVATWRTWLADRIRAADVEYADDYRPADPDAPPPDDSATLPQ 349 Query: 418 VDFAGKDVK 426 +G Sbjct: 350 PGMSGSPAP 358 >gi|229160220|ref|ZP_04288219.1| Foldase protein prsA 2 [Bacillus cereus R309803] gi|228623181|gb|EEK80008.1| Foldase protein prsA 2 [Bacillus cereus R309803] Length = 285 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 90/228 (39%), Gaps = 17/228 (7%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V + S+ R+ + + Y ++ + S+ + + K K+ Sbjct: 30 VATAIDSTITKSDFEKQLKDRYG---KDMLYEMMAQDVITKKYKVSDDDVDKELNKVKNQ 86 Query: 224 Y-----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 Y E R+ ++ + K+ ++ ++ EK+ + ++ P+I+ ++ Sbjct: 87 YGDQFKTVLENNRLKDEADFKNQIKFKLAMNEAVKKSVTEKDVKDHYKPDIK-ASHILVS 145 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAK 334 ++ EA E + L G F +LA+++ + L LG F+ + + + L K Sbjct: 146 DENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFASGTMT-PEFETAAYKL-K 203 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 G + + S GY I +++ K + EVK I + + ++ Sbjct: 204 VGQISNPVKSSNGYHIIKLTDKKD--LKPYNEVKDSIRKNLEEERIAD 249 >gi|311067484|ref|YP_003972407.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942] gi|310868001|gb|ADP31476.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942] Length = 284 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 86/218 (39%), Gaps = 17/218 (7%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVH 240 + E + ++ + L + K+ Y +++ Y L Sbjct: 54 LTQLVQEKVLAKKYKVTDKEIDKKLKEYKTQLGDQYSALKEQYGEDYLKEQVKYELLTQK 113 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E I++++D+++ +E K K + ++ ++ A+E + LKKG+KF LA Sbjct: 114 AAEDNIKVTDDDVKEYWEGLKGKIHT------SHILVADKDTAEEVEKKLKKGEKFEDLA 167 Query: 301 EEQGKSLS---DISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +E S LG SK+ D + + + F L KKG+ + + FGY I + Sbjct: 168 KEYSTDSSANNGGDLGWISKDDTQLDATFSKAAFKL-KKGEVSDPVKTQFGYHIIKNTEE 226 Query: 357 KP-----SFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 + + ++ +++ + A EKV + Sbjct: 227 RGKYDDMKKDLKKDVKEQKLSDTSAVQAAVEKVIKKAD 264 >gi|297181233|gb|ADI17427.1| parvulin-like peptidyl-prolyl isomerase [uncultured Rhodospirillales bacterium HF0070_31K06] Length = 293 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 8/173 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 I++ +L+ YE+ + S E ++ ++EA E + L G+ F ++A+ Sbjct: 121 SQSITDSKLKVRYEELVKNTPSHEEVRARHILVSTEQEAQEVLKLLAGGQPFEEVAKTHS 180 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360 K + LG F + + + F++ K G+ + + FG+ + V + + S Sbjct: 181 KDPAASRGGDLGYFRSSDMVKP-FSAAAFAM-KPGETSASPVKTEFGWHVIKVEDRRQSS 238 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYK--RLEEFLALGTSMDEISRREKIV 411 F ++ IA + A E + ++ F G + S +++ Sbjct: 239 VPPFDRLRPQIARDLGRRIAIEILNAARNGSEIQRFSLDGQPLPPPSAQQQPA 291 Score = 38.4 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 17/121 (14%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 V +V +++ + +++ Q+ V E L+ L+ L Sbjct: 37 VVATVNGEQILSGHLLQAFQNLPRKHRQRGLRAVYGEL----------LEQLIENRLLTY 86 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + L V + +++ V+++RL + I + + Y +++ Sbjct: 87 HGRENNLS-GDAEVKALVKE------AEDQIVARVYLNRLISQSITDSKLKVRYEELVKN 139 Query: 162 T 162 T Sbjct: 140 T 140 >gi|119385325|ref|YP_916381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus denitrificans PD1222] gi|119375092|gb|ABL70685.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus denitrificans PD1222] Length = 279 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 6/183 (3%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEA 286 E ++ +Y+ V EK E EL+A Y++ P ++ ++EA+ Sbjct: 93 EIEKRAYLAGSVLEKIAAAEPDEAELKAAYDQAFGGQAEPAVEYNAAHILVKTREEAEAI 152 Query: 287 FQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + L +G F LAEE+ S LG F E + + A+++ +L +KG + + Sbjct: 153 AKQLAEGADFGALAEEKSTDNSGPNKGDLGWFQPEQMVEP-FAEAVKAL-EKGQVSEPVE 210 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 FG+ + +++ + +F+E+K+ +A Q+R K ++++ + G ++D Sbjct: 211 TQFGWHVIKLNDTREVTPPAFEEIKEQLAVQVRRDKVQAEIEKRVTEAKVEKTEGLAVDL 270 Query: 404 ISR 406 +++ Sbjct: 271 LNK 273 >gi|126732888|ref|ZP_01748679.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37] gi|126706664|gb|EBA05738.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37] Length = 329 Score = 103 bits (258), Expect = 6e-20, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 5/149 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ DE+QA Y+++ + ++ ++ A+E +K G F +A E+ Sbjct: 161 AVTEDEVQAVYQRDFVDVDQGKEYNASHILLETKEAAEEVLAEVKGGADFATVAREKSTG 220 Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S SLG F + + ++ SLA GD T + FG+ + ++ + Sbjct: 221 PSGPNGGSLGWFGAGMMVEP-FQVAVESLA-PGDVTGPVETQFGWHVIKLNETRTQEAPP 278 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 + V+ +I +++ K E + ++++ Sbjct: 279 LEAVRAEIVQKIQQDKVEEHIDSLMRQMD 307 >gi|288941065|ref|YP_003443305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium vinosum DSM 180] gi|288896437|gb|ADC62273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium vinosum DSM 180] Length = 282 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 5/172 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +IE S EL+ Y++ KE+ E + ++ ++ EA + + L KG KF + Sbjct: 112 LSAMADEIEPSEKELKDAYDRIKEQATRTEYK-ARHILLKSEDEAKKLIKQLDKGAKFEE 170 Query: 299 LAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA++ + LG F + A+++ L + FG+ I + Sbjct: 171 LAKKHSEGPTGKDGGDLGWFDPAQMV-APFAEAVTKLEPGSYTKEPVQTQFGWHIIELQE 229 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + + +F++ K + +R K +E L E + + E +++ Sbjct: 230 TRKAEPPAFEDAKPQLTALVRRQKLAEMRNNAMVELNEEVVRLKAEGEDAKK 281 >gi|159185780|ref|NP_357092.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str. C58] gi|159140914|gb|AAK89877.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str. C58] Length = 288 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 4/144 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++NDE++A Y+K E ++ ++ EA + + L GK F LA+E+ Sbjct: 115 AVTNDEVKARYDKEVAALPQEEEIKAAHILVASEDEAKDIIKQLDSGKDFAALAKEKSTD 174 Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F K + ++ F L K + FG+ + + + + + + Sbjct: 175 SNKDDGGDLGWFGKGRMV-PEFEEAAFGLEKGAYTKTPVKTQFGFHVIKLEDKRIAPPPA 233 Query: 364 FQEVKKDIANQMRITKASEKVKED 387 F++V+ + + K +++ Sbjct: 234 FEQVEPQVRQLVMRDKYVALIEKA 257 >gi|303245475|ref|ZP_07331759.1| SurA domain protein [Desulfovibrio fructosovorans JJ] gi|302493324|gb|EFL53186.1| SurA domain protein [Desulfovibrio fructosovorans JJ] Length = 339 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 45/366 (12%), Positives = 105/366 (28%), Gaps = 88/366 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + G R+ L +++L+++++ + Sbjct: 38 DRVVAVVNGKLITLFDLDSRVAELVQRTQ---GISFAPGDPRAEELRRQVLESMINDILI 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q + + + +I K N + F + LA+EG+ KE+ + Sbjct: 95 EQEAARLKINVSETELDSQIDEL----KKKNNLTQAQFQAELAKEGLTLKEFRKRMREDN 150 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++G V ++ + ++EK Sbjct: 151 MKKRLLGFM---------------------------------VHRKVLVTDDEIRDYYEK 177 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K + + + ++ P Sbjct: 178 HKATLST------TKSILGPKVSGN---------------------------ISFIMVPT 204 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKG 336 +K+A+E Q + G F A + G + D L D++ ++ G Sbjct: 205 KKQAEELRQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVP-AG 263 Query: 337 DFTPVIHGSFGYVIAHVSNIK-----------PSFTVSFQEVKKDIANQMRITKASEKVK 385 + + V+ + K PS SF+ V+ I + K + + Sbjct: 264 QVSQPVMLDGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQ 323 Query: 386 EDYKRL 391 + L Sbjct: 324 DYMDNL 329 Score = 37.3 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 14/133 (10%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 +A +L + F D + + D + K + + P Sbjct: 205 KKQAEELRQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVPAGQ 264 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQE--------------KDKFISYLTQMMNKDLLDS 605 V + +G + ++ T P + +++ L + L Sbjct: 265 VSQPVMLDGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQD 324 Query: 606 VIAYLKSQYSVTV 618 + L+S+ + V Sbjct: 325 YMDNLRSKAVIEV 337 >gi|297521498|ref|ZP_06939884.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 152 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 9/156 (5%) Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 KG F LA+E+ + + +G IPD L +KG + VI S Sbjct: 1 NKGGDFAALAKEKSADIISARNGGDMGWLEDATIPD---ELKNAGLKEKGQLSGVIKSSV 57 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G++I + +I+P+ S EV+ DIA +++ KA + +++ + A + ++ Sbjct: 58 GFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSD--AASNDTESLAG 115 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 E+ + + KD +E+ P + + Sbjct: 116 AEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNG 151 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 37/94 (39%) Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 ++ V++ + PA+ + L+EV D+ K K + + ++ S + ++ Sbjct: 58 GFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAE 117 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 + G T ++ + + +F+G Sbjct: 118 QAAGVKATQTGWFSKDNLPEELNFKPVADAIFNG 151 >gi|228942849|ref|ZP_04105367.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228816835|gb|EEM62942.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 284 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 22/214 (10%) Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP------E 228 L + A + + +D I+L+ V A L + Y E Sbjct: 47 KKLKETAGKPVLQQVMLDKILLDKYKVTDDEAKKKVEELKKQMGDNFKAYLTQAGAKDEE 106 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + EK K ++ E++ Y+ ++ ++K A E + Sbjct: 107 DLKTKIKTQIAFEKAVKASVTEKEMKDYYK---------PKLKASHILVKDEKTAKEIKE 157 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGS 345 L G+ F LA++ + G E+ P D ++ + L + G + I S Sbjct: 158 KLNNGEDFAALAKQYSEDPGSKEKGGELPEFGPGEMDSKFEEAAYKL-EAGQVSDPIKSS 216 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 GY I ++ K F + K +I ++ + Sbjct: 217 HGYHIIKLTEKKE--LKPFDQEKDNIRKELEQKR 248 >gi|295694759|ref|YP_003587997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM 2912] gi|295410361|gb|ADG04853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM 2912] Length = 305 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 41/366 (11%), Positives = 101/366 (27%), Gaps = 103/366 (28%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92 AL S V + +V + +K + ++ + + ++L Sbjct: 19 ALAGCGSSDVVATFDGGQVHRAELDKQFKLQR--------LLIAPQYPDTPQNRLEVLQQ 70 Query: 93 LVSGA-TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 + LDQ + G+ + +A+ Sbjct: 71 YIVMHDILDQKAKQEGITVSDKELADTVAQ------------------------------ 100 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI----VLNNRHVPAIAD 207 R ++ G + L + ++ + + +L ++ Sbjct: 101 --------YRQQLIQYVYGNA---DALNKKMAELGLQDNDLQALARDDILAQKYFAKHLS 149 Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 S+ + +++ + +Y Sbjct: 150 VSDEEIQAYYKDHPADYT------------------------------------------ 167 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSL 325 I V ++ ++EA++ + KG+ F Q+A+E S G + + Sbjct: 168 -IAKVAHILVKTKQEAEQVEARILKGESFAQIAKEVSLDPSKDQGGELPEGPLSQWVGPF 226 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D+ L G + + FG+ I V + + +VK + N++ K + Sbjct: 227 QDAAMKLP-IGQISDPVQTQFGWHILRVDSRR---VEPLSQVKDQVKNKVMQMKEQQWFN 282 Query: 386 EDYKRL 391 + + Sbjct: 283 QAKQDA 288 >gi|30261164|ref|NP_843541.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames] gi|47526319|ref|YP_017668.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183995|ref|YP_027247.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne] gi|65318433|ref|ZP_00391392.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus anthracis str. A2012] gi|165871813|ref|ZP_02216456.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0488] gi|167635351|ref|ZP_02393665.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0442] gi|167640186|ref|ZP_02398452.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0193] gi|170688111|ref|ZP_02879323.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0465] gi|170707650|ref|ZP_02898102.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0389] gi|177654152|ref|ZP_02936125.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0174] gi|190566666|ref|ZP_03019583.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis Tsiankovskii-I] gi|196036478|ref|ZP_03103874.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus W] gi|196037489|ref|ZP_03104800.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus NVH0597-99] gi|218902237|ref|YP_002450071.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH820] gi|227816105|ref|YP_002816114.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. CDC 684] gi|228926187|ref|ZP_04089262.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932442|ref|ZP_04095323.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229120660|ref|ZP_04249903.1| Foldase protein prsA 1 [Bacillus cereus 95/8201] gi|229600239|ref|YP_002865593.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0248] gi|254682780|ref|ZP_05146641.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066] gi|254725568|ref|ZP_05187350.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055] gi|254734195|ref|ZP_05191908.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North America USA6153] gi|254740159|ref|ZP_05197851.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B] gi|254753500|ref|ZP_05205536.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum] gi|254758597|ref|ZP_05210624.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94] gi|46396834|sp|Q81U45|PRSA1_BACAN RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|30254778|gb|AAP25027.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. Ames] gi|47501467|gb|AAT30143.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames Ancestor'] gi|49177922|gb|AAT53298.1| protein export protein prsA [Bacillus anthracis str. Sterne] gi|164712390|gb|EDR17924.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0488] gi|167511787|gb|EDR87167.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0193] gi|167529179|gb|EDR91932.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0442] gi|170127425|gb|EDS96300.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0389] gi|170668006|gb|EDT18757.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0465] gi|172080859|gb|EDT65939.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0174] gi|190562218|gb|EDV16186.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis Tsiankovskii-I] gi|195990952|gb|EDX54924.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus W] gi|196031731|gb|EDX70327.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus NVH0597-99] gi|218537167|gb|ACK89565.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH820] gi|227006959|gb|ACP16702.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. CDC 684] gi|228662665|gb|EEL18262.1| Foldase protein prsA 1 [Bacillus cereus 95/8201] gi|228827132|gb|EEM72885.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833440|gb|EEM79002.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264647|gb|ACQ46284.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0248] Length = 287 Score = 103 bits (258), Expect = 7e-20, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ K+ + Sbjct: 235 IKKELVAKKSQD 246 >gi|171914423|ref|ZP_02929893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium spinosum DSM 4136] Length = 299 Score = 103 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 16/188 (8%) Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---NQKEAD---- 284 + + + E ++QA YE N + + S E V + + A+ Sbjct: 110 VRMDKMLQNVYSPEPEPGEADIQAYYEANVKHFLSEEQIRVSHISLNLSGARSRAEVYQT 169 Query: 285 --EAFQSLKKGKKFIQLAEEQGKSLS-DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E + + G F LA E + LG F K + FS+ + G+ +PV Sbjct: 170 MRELREQVLGGADFDALAAEHNSNKDMSPDLGWFKKGEFME-EFEAIAFSM-RDGEISPV 227 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 G+ I +++ K + EV++ + ++ K E + L+ G + Sbjct: 228 FTTQLGFHICRLTDRKAAVPKPLDEVREAVRARILEEYRDGKFNEFLETLK----GGAKI 283 Query: 402 DEISRREK 409 ++ E Sbjct: 284 EDTEPEED 291 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 16/149 (10%) Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 I+ + ++ +V + + L E + G D ++ P + + K +E Sbjct: 153 ISLNLSGARSRAEVYQTMRELREQVLGGADFDALAAEHNSNKDMSPDLGWFKKGEFMEEF 212 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 AI + +D +S T L + ++ + A + L+EV V+ Sbjct: 213 EAIAFSM--------RDGEISPVFTTQL---GFHICRLTDRKAAVPKPLDEVREAVRA-- 259 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + EE LE K G D Sbjct: 260 ---RILEEYRDGKFNEFLETLKGGAKIED 285 >gi|228984228|ref|ZP_04144410.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775515|gb|EEM23899.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 287 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 35/242 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I + E+ + + + M + E + + ++ V Sbjct: 35 ITKDEFYEQMKTQAGKQVLNNMVM------------------EKVLIKNYKVEDKEVDKR 76 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D + + F+ K E + EK + I++ EL+ Y+ Sbjct: 77 FDETKKQVGDQFDTLLKQQGMKEETFKNMLRAQLAQEKAIEKTITDKELKDNYK------ 130 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 PEI+ ++ ++ A + + L +GK F +LA++ + LG F + Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKM 187 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D+ + L KK + + + FGY I V++IK SF++ K DI ++ KA Sbjct: 188 VK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKA 244 Query: 381 SE 382 + Sbjct: 245 QD 246 >gi|124516597|gb|EAY58105.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum rubarum] Length = 340 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 57/358 (15%), Positives = 118/358 (32%), Gaps = 71/358 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + S S + ++ E S L+ K+L ++ Sbjct: 35 DQVMAVVNHHMITKSELDRSLAPTFKKLHKRFRGKAYRELVAS--LEYKLLMKKINERLE 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + E GL + I K+N S + L+ +G++ + Y K + Sbjct: 93 LEEAERQGLTVTDDELDHAIESIMQ---KNNFTSKWQLKTALSEQGMSYRRYKQQLRKQM 149 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + +V V + S + Q++ Sbjct: 150 TILKLVNQ---------------------------------EVRSTVVISPDEVRQYYLA 176 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++D YR P + + I + E + +I + E +V Sbjct: 177 HRDKYRLPPHVTLRDIFLRIPEGATEAQI-----------------QEIRKHGEHIV--- 216 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + LK+G F+ LA + + + + +LG +K+ + L F++ G Sbjct: 217 --------RQLKRGDDFVILAGSESEGPNAENGGALGDLTKDQLL-PELVQPAFTIP-PG 266 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + +I S G+ I V + + SF+E+K I N + ++++ ++L E Sbjct: 267 QTSGLIQTSNGFYIIKVIKREDNSFRSFKELKAQILNDLTKKTTDKRLRIWLEKLREK 324 >gi|150025240|ref|YP_001296066.1| peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium psychrophilum JIP02/86] gi|149771781|emb|CAL43255.1| Probable peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium psychrophilum JIP02/86] Length = 658 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 61/407 (14%), Positives = 138/407 (33%), Gaps = 56/407 (13%) Query: 273 EQLVFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLA 326 ++ + +A + + LK+G+ F LA + + + G F+ + Sbjct: 247 SEITTTEKAKATIQDIYTKLKQGENFESLASQFSQDKNSAPKGGLLPRFASGQLSSEEFE 306 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV-- 384 ++ F+L K +++ FG+ I + +P E++K++ ++R S + Sbjct: 307 NAAFALTKPNEYSAPFESQFGWHIVKLVEKQP--IKKLNEMEKELDEKIRKDDRSRLITN 364 Query: 385 ---------------KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 ++ Y +++ + + + + D L K + G + Sbjct: 365 SLTNKLRKKYTIVRNEKLYAQIKTLVTDKIYVSQWKLPANLKDYDSNLFKIENKSITGTQ 424 Query: 430 VAAIPYKEQ---LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486 +I +Q L + GK + V Y +++ P +EE + Sbjct: 425 FLSILEAQQKSDLKIKPVGKLVDFVYQNFVDAQMTDYYNDNLEKEFPDFANVIEEYRDGL 484 Query: 487 -------KKDWKTVKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 K+ W+ K K AN+L ++ + G + +N+ Sbjct: 485 LLFDLMEKEIWEKAKQDTLALKKYYNANKLQYQWKNRAEVLVASSTKEGVAKEARKLLNK 544 Query: 537 MDNENKFFGYDGISQV----------------FSGPVEMVKCFPI--ENGLSYVVFKVTN 578 ++ +V F VE ++G Y V KV+ Sbjct: 545 DQTDDFIKTTLNTKEVVNVMIKKENYEEGSENFPKKVEFKTGVSEIYKDGEFYFVNKVSK 604 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 V+ D+ + + L D+ ++ LK ++ V ++ + +R Sbjct: 605 IIPASVKTFDEAHGRVVNDYQQYLEDNWVSNLKKEFKVNINQEVFER 651 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 62/353 (17%) Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFE-----------KYKDNYRAPEYKR---ISYILFD 238 ++ + N+++ + D S L ++ E K + E SY Sbjct: 40 EFSRVYNKNIDLVKDESQKDLNKYMELFVGYKLKINKANKIGLQNNEKYINELKSYRTQL 99 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------DEAFQ 288 +++ ++ Y ++ ++ ++ + A Sbjct: 100 SKNYTSDTKVTKALIEEGYNRSLKEI------RASHILITVDENAVPADTLKAYNQAIDI 153 Query: 289 SLKK--GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 K G+KF LA ++ + LG FS + ++ KKG + + Sbjct: 154 RKKALVGEKFEDLAVTFSQDPSSKENKGDLGYFS-AFRMIYPFETVAYN-TKKGQISMPV 211 Query: 343 HGSFGYVIAHVSN-------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 FGY + ++++ I + + + K + + KA +++ Y +L++ Sbjct: 212 RTKFGYHLIYITDSRENRGEITVAHIMILKSPKAE-SEITTTEKAKATIQDIYTKLKQ-- 268 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 G + + ++ + P + G+ E+ F P Sbjct: 269 --GENFESLASQFSQDKNSAPKGGLLPRFASGQ-----LSSEEFENAAFALTKPNEYSAP 321 Query: 456 VALPDGSYMWVQIKESIP-----ARDRKLEE-VLTDVKKDWKTVKTAEEVSSK 502 G + V++ E P +++L+E + D + T ++ K Sbjct: 322 FESQFG-WHIVKLVEKQPIKKLNEMEKELDEKIRKDDRSRLITNSLTNKLRKK 373 Score = 46.9 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 22/196 (11%) Query: 210 NAVLTQWFEKYKD----NYRA--PEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 +A +T ++ + ++ EY+ + E +K + L+ Y NK Sbjct: 455 DAQMTDYYNDNLEKEFPDFANVIEEYRDGLLLFDLMEKEIWEKAKQDTLALKKYYNANKL 514 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS------FS 316 +Y V + A EA + L ++Q +L + Sbjct: 515 QYQWKNRAEVLVASSTKEGVAKEARKLLN---------KDQTDDFIKTTLNTKEVVNVMI 565 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 K+ + + + K + + Y + VS I P+ +F E + N + Sbjct: 566 KKENYEEGSENFPKKVEFKTGVSEIYKDGEFYFVNKVSKIIPASVKTFDEAHGRVVNDYQ 625 Query: 377 ITKASEKVKEDYKRLE 392 V K + Sbjct: 626 QYLEDNWVSNLKKEFK 641 Score = 38.8 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 53/139 (38%), Gaps = 10/139 (7%) Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN--QINRMDNENKFFGYDGISQV 552 T E+ + + + K+G+NF + + + + + + Sbjct: 251 TTEKAKATIQDIYTKL-KQGENFESLASQFSQDKNSAPKGGLLPRFASGQLSSEEFENAA 309 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD-----LLDSVI 607 F+ P E+ + + K+ + P+++ ++ L + + KD + +S+ Sbjct: 310 FALTKPNEYSAPFESQFGWHIVKLVEKQ--PIKKLNEMEKELDEKIRKDDRSRLITNSLT 367 Query: 608 AYLKSQYSVTVHDNLIQRY 626 L+ +Y++ ++ L + Sbjct: 368 NKLRKKYTIVRNEKLYAQI 386 >gi|206603474|gb|EDZ39954.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp. Group II '5-way CG'] Length = 324 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 78/183 (42%), Gaps = 15/183 (8%) Query: 212 VLTQWFEKYKDNYRAPEY------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + + + P+ ++ ++ +IS ++ Y+ ++ + Sbjct: 113 EIMDYLNNH---FLQPDKSLETFARKALFLQKTAKALAPLPDISVSTERSFYKNHQNLFR 169 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322 V+ +V Q+EA+ +L KG F +LA+ + ++ S + + + +P Sbjct: 170 VSRQAIVDHIVVAKQEEAESIRDALLKGSSFGKLAKLESLGMEASSGGRMKPYPQGTMPP 229 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D++F++ K G+ +PV+ S+GY + + P T+ F K I ++ K + Sbjct: 230 P--FDTVFTM-KPGEISPVLSSSYGYHLFRLEKFIPKHTLPFSMEKNWIKKKLTREKRQK 286 Query: 383 KVK 385 ++ Sbjct: 287 VLQ 289 >gi|54288331|gb|AAV31619.1| predicted parvulin-like peptidyl-prolyl isomerase [uncultured alpha proteobacterium EBAC2C11] Length = 289 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ ++ Y+ S E T ++ + EA + SL G F +LA + Sbjct: 121 DVTDAAIEKAYKTFVADTASREQVTAAHILVATEDEAKKIIASLAGGADFAELARSKSTG 180 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S SLG F + + + ++ F+L T + FG+ + V + + + + Sbjct: 181 PSGPNGGSLGKFGRGQMV-PAFENAAFALEDGKITTQPVQTQFGWHVIKVESKEIAPAPT 239 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 +++++ + + ++E + E Sbjct: 240 IEDMREQLVQTLSTQALGRVLEELRAKQE 268 Score = 43.8 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 46/132 (34%), Gaps = 1/132 (0%) Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546 ++ +A +++ + G +F ++ ++ N + Sbjct: 141 REQVTAAHILVATEDEAKKIIASLA-GGADFAELARSKSTGPSGPNGGSLGKFGRGQMVP 199 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 + F+ + P++ + V KV + ++ P + L Q ++ L V Sbjct: 200 AFENAAFALEDGKITTQPVQTQFGWHVIKVESKEIAPAPTIEDMREQLVQTLSTQALGRV 259 Query: 607 IAYLKSQYSVTV 618 + L+++ + + Sbjct: 260 LEELRAKQEIRL 271 >gi|315304396|ref|ZP_07874697.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596] gi|313627234|gb|EFR96066.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596] Length = 245 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 31/242 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVHEKEKKIE 247 + ++ + F+KYK Y E + + Y L E + Sbjct: 12 LGDKYKVTDEQVNSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNLLVQKATEANTD 71 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 72 TSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGAKFADLAKEYSTDT 125 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + KP+ ++ Sbjct: 126 ATKDNGGELAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTY 183 Query: 365 QEVKKDIAN-----QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + KK + Q+ + +K++YK + + + + + D Sbjct: 184 DKDKKAVKESYLQSQLTTENMQKTLKKEYKDANVKVED-KDLKDAFKDYDGSAKKEESTD 242 Query: 420 FA 421 + Sbjct: 243 SS 244 >gi|154684591|ref|YP_001419752.1| YacD [Bacillus amyloliquefaciens FZB42] gi|154350442|gb|ABS72521.1| YacD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 10/250 (4%) Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 G +E+ K ++R D + S L + E + + ++N Sbjct: 29 QAAGSSEESIATIGDKHITRQDWMKKMEDQYGKSTLEDMINAQVVEELAEKNKLTVSNSE 88 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKN 260 + AV ++E + E++ +I Y + K I+IS+ E+Q+ Y KN Sbjct: 89 LDREFLLIKAVDNSFYED--SHITEKEWRDQIRYNILLEELLTKDIDISDKEMQSFYNKN 146 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS 316 KE Y + + +V N+ EAD LK G F +A E+ LG + Sbjct: 147 KELYHFDDSYRIRHIVVKNKDEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVT 206 Query: 317 --KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 +E IP + ++ L + I S GY + + S T S+ EVK I Q Sbjct: 207 ENQENIPQAYITEAK-KLKEDEWSVEPIKVSSGYAVIQLKEKLKSRTFSYNEVKSQIRRQ 265 Query: 375 MRITKASEKV 384 + + + +K Sbjct: 266 IAMEQLGDKA 275 >gi|254690082|ref|ZP_05153336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 6 str. 870] gi|256258335|ref|ZP_05463871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 9 str. C68] gi|260755622|ref|ZP_05867970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 6 str. 870] gi|260884648|ref|ZP_05896262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 9 str. C68] gi|297247182|ref|ZP_06930900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 5 str. B3196] gi|260675730|gb|EEX62551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 6 str. 870] gi|260874176|gb|EEX81245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 9 str. C68] gi|297174351|gb|EFH33698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 5 str. B3196] Length = 331 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + A A ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL---AALIDIKAMVGEAE-KDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|84500721|ref|ZP_00998970.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597] gi|84391674|gb|EAQ04006.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597] Length = 282 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 59/160 (36%), Gaps = 5/160 (3%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--- 304 ++++ +Q Y+ ++ ++EA + L G F +LA+E+ Sbjct: 116 VTDEAIQQAYDDTYGNAEPETEYKAAHILVETEEEARAIVEELNGGGDFAELAQEKSTGP 175 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + + LG F K + +++ + + G + + FG+ + + + + Sbjct: 176 SAPNGGELGWFGKGMMV-APFEEAVVGM-EPGAVSEPVQTQFGWHVIQLQETRTKDAPAL 233 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 ++V+ ++ Q+ + + ++D Sbjct: 234 EDVRDELRGQVEQQLVKAHIDALVENANVDTTGADAVDPA 273 >gi|228976219|ref|ZP_04136699.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783511|gb|EEM31610.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 279 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 22/214 (10%) Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP------E 228 L + A + + +D I+L+ V A L + Y E Sbjct: 42 KKLKETAGKPVLQQVMLDKILLDKYKVTDDEAKKKVEELKKQMGDNFKAYLTQAGAKDEE 101 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + EK K ++ E++ Y+ ++ ++K A E + Sbjct: 102 DLKTKIKTQIAFEKAVKASVTEKEMKDYYK---------PKLKASHILVKDEKTAKEIKE 152 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGS 345 L G+ F LA++ + G E+ P D ++ + L + G + I S Sbjct: 153 KLNNGEDFAALAKQYSEDPGSKEKGGELPEFGPGEMDSKFEEAAYKL-EAGQVSDPIKSS 211 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 GY I ++ K F + K +I ++ + Sbjct: 212 HGYHIIKLTEKKE--LKPFDQEKDNIRKELEQKR 243 >gi|49480150|ref|YP_035301.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331706|gb|AAT62352.1| protein export protein prsA [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 287 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKELVAKKAQD 246 Score = 37.3 bits (85), Expect = 9.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 9/139 (6%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K + +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKDNYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + ++ Sbjct: 177 GDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227 Query: 479 LEEVLTDVKKDWKTVKTAE 497 E+ D+KK+ K + Sbjct: 228 FEQSKADIKKELVAKKAQD 246 >gi|114704310|ref|ZP_01437218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi HTCC2506] gi|114539095|gb|EAU42215.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi HTCC2506] Length = 295 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK- 305 ++++EL+A YE+ P+ ++ + +A + L+ G F +LA E+ Sbjct: 116 TVTDEELRARYEQEIAAMEPPQEVRARHILLETEDQARTVIEELQNGADFAELATEKSTG 175 Query: 306 --SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + + LG F+ + +++ F+L + FG+ + V + + + Sbjct: 176 PTAQNGGDLGFFADGQMV-PPFSEAAFALEPGAITEEPVQTQFGWHVIKVEEKRQAEPPA 234 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 +++V++ I + K V E + L Sbjct: 235 YEQVQEQIRRAVLQEKYVGLVGEAREEL 262 >gi|332716317|ref|YP_004443783.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3] gi|325063002|gb|ADY66692.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3] Length = 287 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 60/144 (41%), Gaps = 4/144 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++N+E++A Y+K E ++ ++ EA + + L GK F LA+E+ Sbjct: 115 AVTNEEVKARYDKEVAALPKEEEIKAAHILVASEDEAKDVIKQLDAGKDFAALAKEKSTD 174 Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F K + ++ F L K + FG+ + + + + + + Sbjct: 175 SNKDDGGDLGWFGKGRMV-PEFEEAAFGLEKGAYTKTPVKTQFGFHVIKLEDKRIAPPPA 233 Query: 364 FQEVKKDIANQMRITKASEKVKED 387 F++V+ + + K +++ Sbjct: 234 FEQVEPQVRQLVMRDKYVALIEKA 257 >gi|306520092|ref|ZP_07406439.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-32g58] Length = 323 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87 +L V + ++ V ++ + + + G ++ G L+ Sbjct: 19 SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 78 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146 I+ +V L Q +D GL V + ++K + + + ++ + G+ Sbjct: 79 VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 132 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 +++ ++ L+ N + Sbjct: 133 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 158 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + S+ + ++ +K ++ E ++ + + +K++ E + N Sbjct: 159 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 212 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322 +K G+ F LA++ + LG F+K+ + Sbjct: 213 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 252 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +F L KK + + V S+GY I V++ + SF E + I + K E Sbjct: 253 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 310 Query: 383 KVKEDYKRLE 392 +K+ + + Sbjct: 311 HIKKLNEDAK 320 >gi|152974691|ref|YP_001374208.1| peptidylprolyl isomerase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023443|gb|ABS21213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cytotoxicus NVH 391-98] Length = 285 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 30/222 (13%) Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI--- 246 + V Y ++ + SN + + F+K K+ + + + K Sbjct: 53 KDVLYEMMAQDIMTKKYKVSNEAVNKEFKKAKEQFGDQFKAVLESNRLKDEDDFKNQIRF 112 Query: 247 ----------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 I+ +++A Y+ PEI+ ++ N+++A+E + L +G F Sbjct: 113 KLAMEQAIKESITEKDIKANYK--------PEIK-ASHILVNNEEKANEIKKKLDEGASF 163 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA+++ + LG F + ++ + L K G+ + I S+GY I Sbjct: 164 EELAKQESEDPGSKEKGGDLGYFGPGKMA-PEFEEAAYKL-KVGEISKPIKSSYGYHIIK 221 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +++ K + EVK I + + +++ L EF Sbjct: 222 LTDKKE--LKPYNEVKDSIRKNLEKERIADQAIHQKILLNEF 261 >gi|313622749|gb|EFR93091.1| foldase protein PrsA [Listeria innocua FSL J1-023] Length = 291 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 26/207 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F++YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANAD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390 + KK + + +E +++ K+ Sbjct: 234 DKDKKAVKESYLASQLTTENMQKTLKK 260 >gi|312879532|ref|ZP_07739332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas paucivorans DSM 12260] gi|310782823|gb|EFQ23221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas paucivorans DSM 12260] Length = 297 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 65/145 (44%), Gaps = 6/145 (4%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS- 308 + L+ Y+ +++++ E V ++ ++ A +A ++ G F + A EQ + + Sbjct: 135 DQTLKRYYDAHRDQFVQAEAVHVRHILTEDEASARKALLAVLGGADFAKTAAEQSRDKAT 194 Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L + P + D +FSL K + FG+ + V + + +SF+ Sbjct: 195 AERGGDLEWVERGQTPK-AFEDLVFSLRKD-AVGGPVKTDFGWHVVQVLEKRAARALSFE 252 Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390 E K ++A +++ + E +K+ + Sbjct: 253 EAKGEVAQRLQRSYLEETLKKLRGQ 277 >gi|118476746|ref|YP_893897.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam] gi|225863116|ref|YP_002748494.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102] gi|229090207|ref|ZP_04221455.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42] gi|229183467|ref|ZP_04310692.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1] gi|118415971|gb|ABK84390.1| protein export protein [Bacillus thuringiensis str. Al Hakam] gi|225789473|gb|ACO29690.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102] gi|228600051|gb|EEK57646.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1] gi|228693143|gb|EEL46856.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42] Length = 285 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 76/206 (36%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K+ Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVEKEVQKVKNQYGDQFTAVLENNRLKDEADFKKQIKFKLAM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K ++ E++A Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NEAIKKSVTEKEVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L K G + + GY I +++ Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERIAD 249 Score = 38.0 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 EVK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 EVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + V P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEEERIAD 249 >gi|206603473|gb|EDZ39953.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp. Group II '5-way CG'] Length = 340 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 62/383 (16%), Positives = 128/383 (33%), Gaps = 73/383 (19%) Query: 16 IFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 IFL L + FL G + + + V + S S + ++ Sbjct: 11 IFLSATLLLSFLQAGTARGERVLV-DQVMAVVNHHMITKSELDRSLAPTFKKLHKRFRGK 69 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 E S L+ K+L ++ + E GL + I K+N S Sbjct: 70 AYRELVAS--LEYKLLMKKINERLELEEAERQGLTVTDDELDHAIESIMQ---KNNFTSK 124 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + L+ +G++ + Y K ++ +V Sbjct: 125 WQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQ--------------------------- 157 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 V + S + Q++ ++D YR P + + I + E + +I Sbjct: 158 ------EVRSTVVISPDEVRQYYLAHRDKYRLPPHVTLRDIFLRIPEGATEAQI------ 205 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDIS 311 + E ++ + LK+G F+ LA + + + + + Sbjct: 206 -----------QEIRKHGEHIL-----------RQLKRGDDFVILAGSESEGPNAENGGA 243 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG +K+ + L F++ G + +I S G+ I + + + SF+E+K I Sbjct: 244 LGDLTKDQLL-PELVQPAFTIP-PGQTSGLIQTSNGFYIIKIIKREDNSFRSFKELKSQI 301 Query: 372 ANQMRITKASEKVKEDYKRLEEF 394 N + ++++ ++L E Sbjct: 302 LNDLTKKTTDKRLRIWLEKLREK 324 >gi|310657790|ref|YP_003935511.1| foldase lipoprotein [Clostridium sticklandii DSM 519] gi|308824568|emb|CBH20606.1| putative foldase lipoprotein (Late stage protein export lipoprotein) precursor [Clostridium sticklandii] Length = 354 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 58/424 (13%), Positives = 130/424 (30%), Gaps = 99/424 (23%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 K L ++ +I+ L+ + S + V ++ +S + + Sbjct: 1 MKKLLSLIMSSLMIFSLAACSNTASANEWAAKVNDVEISYSDYEKNL------------- 47 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + K+I V +I GK Sbjct: 48 ---------AIIKKQI----------------------EATVGADIWTQDSGQGK----- 71 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + L D + L ++ + + D+ ++ + + + Sbjct: 72 --TYNEILK----------DQVLEKLIEDQLILAEAKKENIT-VDADEFEKEFTQFKEQV 118 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 + + ++ L + E + E +K S ++L Sbjct: 119 KSLPDYETFLKEEGITDEFLKKQLETDTIVFEYKEK------------FMEKNTPSEEDL 166 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN----------------QKEADEAFQSLKKGKKFI 297 + Y+ N+E Y E++ ++ +KEA+ + G+ F Sbjct: 167 KKYYDDNQENYNVNEVK-ASHILLKTVDENFVPLPEDKIAEIKKEAEAVLAKVNSGEDFA 225 Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E + ++ LG F+K + D FSL + + ++ ++GY I V Sbjct: 226 VLAKEYSQDEASAVNGGDLGFFAKGVMVK-EFEDVAFSL-EPNQVSDLVETTYGYHIIKV 283 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 K + F++VK++I N++ K+ K + ++ + K S Sbjct: 284 FE-KKNEVTPFEDVKENIKNELA-QKSYLDFVASLKESAKIEKNDAALKKADEESKSESQ 341 Query: 414 DLPL 417 + Sbjct: 342 NEEQ 345 >gi|297622327|ref|YP_003703761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera radiovictrix DSM 17093] gi|297163507|gb|ADI13218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera radiovictrix DSM 17093] Length = 641 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 113/401 (28%), Gaps = 98/401 (24%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQE 63 K + T + + + L V +I LF + + V Q + Sbjct: 5 KQTNTVILWLIAIALLVSMVIAFTPGTLFGGAQPQQAEAALLVNGQPIRTVD-------- 56 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + F E + L++ +LD L+ L Q + + V + Sbjct: 57 VARFEATPPFNAVQEGPAAEDLEQVLLDELIDQELLRQAASRVN--VSNAEVRARVNAFR 114 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 G + ++ + G ++ + + L R + G + Sbjct: 115 EEQGVAGSANDRAYLDLIGSAGYTDESFRALMREQLQRERYLESVAGDL----------- 163 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + ++ + FE +D Y++ Sbjct: 164 -----------------------EVTDEEVRAHFEANRDVYQSEP--------------- 185 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 QLV ++ A++ + G+ F LA E Sbjct: 186 -------------------------RIVARQLVVTDEGLANDLYARALAGEDFAALAREH 220 Query: 304 GK--SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 + +LG+ E P ++AD+ F+L G T I + + I V Sbjct: 221 STERAEQGGALGAAEGESDPRPVTRVALPTAVADAAFALQGTG-LTEPIEAAGAFYIVSV 279 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +P F+EV++ + K + + + L E Sbjct: 280 EAYEPPQPRPFEEVQEQVREDALAAKETGAQEAALRTLREE 320 Score = 45.0 bits (105), Expect = 0.044, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 11/173 (6%) Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA---LGTSMDEISRREKIV 411 + + E +D+ A + V D + A G ++R Sbjct: 164 EVTDEEVRAHFEANRDVYQSEPRIVARQLVVTDEGLANDLYARALAGEDFAALAREHSTE 223 Query: 412 SIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + + A + + V + + F + A G++ V ++ Sbjct: 224 RAEQGGALGAAEGESDPRPVTRVALPTAVADAAFALQGTGLTEPIEAA--GAFYIVSVEA 281 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 P + R EEV V++D + A + L +E + Sbjct: 282 YEPPQPRPFEEVQEQVRED-----ALAAKETGAQEAALRTLREEATIETPAGS 329 >gi|312797257|ref|YP_004030179.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI 454] gi|312169032|emb|CBW76035.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia rhizoxinica HKI 454] Length = 512 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 48/422 (11%), Positives = 123/422 (29%), Gaps = 68/422 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ + + ++ L ++L+ +V Sbjct: 103 DRIVAVVNNDVITRRELDLRMGLITRRLQQQGAPLPSPDQ-----LQLQVLNQMVLERIQ 157 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ D + +AR + N S D++ +RL EG+ + L Sbjct: 158 LQRAKEDGIVVDDATLQHTLARL----AQANNMSLDMYRARLEAEGVPWSVFSADARNEL 213 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + + V + S+ + R + + + A + + Sbjct: 214 LLSKLREKEVDSRITVSDAEVANYIASQRGPMQRVQQDLRFEHILIKAALNAPQTEIEAA 273 Query: 217 FEKYKDNYRA----------------------------------PEYKRISYILFDVHEK 242 +K + + PE + + Sbjct: 274 RQKASELLKRALASENFARLAKDNSQAPDASKGGDLGFRSTSALPEAMTQAASQLRPGQV 333 Query: 243 EKKIEISND--ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 ++ + + E+ ++ E ++ +++ E Sbjct: 334 NPEVLRTPEGFEIVRLVDRRVSSGMGSEAPRLVQTHARHILIRIGEGQPEPAARQKLVEL 393 Query: 287 FQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F A + G + LG S ++ +L K G+ + I Sbjct: 394 REQIEAGGDFANFAHTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-KDGEISQPIR 451 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +GY + V + + S + ++ + KA + + ++L + + +D Sbjct: 452 TEYGYHLIQVMGRREAQG-SVAQQQEIARQAIGQRKAEQAYADWLRQLRDSAYVQYKLDG 510 Query: 404 IS 405 + Sbjct: 511 PA 512 >gi|47565690|ref|ZP_00236730.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241] gi|47557326|gb|EAL15654.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241] Length = 283 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------YRAPEYKRISYILFDVH 240 Y ++ ++ + S+ + E+ KD + + + Sbjct: 55 YQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNEDELKEKMKPEIAF 114 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EK K ++ +++ Y+ PE++ V ++ ++K A E + + G+ F LA Sbjct: 115 EKAIKATVTEKDVKDNYK--------PEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALA 165 Query: 301 EEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + G + P ++ + L G + + ++GY I V++ K Sbjct: 166 KQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKL-DAGKVSEPVKTTYGYHIIKVTDKK 224 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 F EVK I + + + + +++ L + + K Sbjct: 225 E--LKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDADIKVNDKEFK 274 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 145 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGK 204 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 205 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNGLLKDA 264 Query: 615 SVTVHDN 621 + V+D Sbjct: 265 DIKVNDK 271 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 89/263 (33%), Gaps = 44/263 (16%) Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDI 310 EL+ +Y ++ +++ +++ + ++ K G+ F E+ G D Sbjct: 44 ELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED- 102 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ P+++ +I + TV+ ++VK + Sbjct: 103 ---ELKEKMKPEIAFEKAIKA-----------------------------TVTEKDVKDN 130 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 +M+++ K ++ K ++E + G ++++ + G+ V Sbjct: 131 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTV 190 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 ++ + D + Y +++ + + +EV ++KD Sbjct: 191 ------KEFEEAAYKLDAGKVSEPVKTTY--GYHIIKVTDKKE--LKPFDEVKDSIRKDI 240 Query: 491 KTVKTAEEVSSKANQLVLEYSKE 513 + + + Q+V K+ Sbjct: 241 EQQRLQDTTGKWKQQVVNGLLKD 263 >gi|16801386|ref|NP_471654.1| hypothetical protein lin2322 [Listeria innocua Clip11262] gi|46396988|sp|Q929F4|PRSA2_LISIN RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|16414834|emb|CAC97550.1| lin2322 [Listeria innocua Clip11262] Length = 291 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 26/207 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F++YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANAD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390 + KK + + +E +++ K+ Sbjct: 234 DKDKKAVKEAYLASQLTTENMQKTLKK 260 >gi|229189238|ref|ZP_04316262.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876] gi|228594282|gb|EEK52077.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876] Length = 288 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 17/220 (7%) Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226 F M+ S E + ++++ V D L F+ K Sbjct: 40 FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKYDEMKKQLGDQFDTLLKQQGLK 99 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E + EK + I++ EL+ Y+ PEI+ ++ ++ A + Sbjct: 100 EETVKNGVRASLAQEKAIEKTITDKELKENYK--------PEIK-ASHILVKDEATAKKV 150 Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + L +GK F +LA++ + LG F+ + D+ + L KK + + + Sbjct: 151 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTAGKMVK-EFEDAAYKL-KKDEVSEPV 208 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 FGY I V++IK SF++ K DI ++ K + Sbjct: 209 KSQFGYHIIKVTDIKEPE-KSFEQSKADIKKEIVQKKMQD 247 Score = 38.0 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 95/260 (36%), Gaps = 55/260 (21%) Query: 247 EISNDELQAEYEKNKEKYFSPEI---RTVEQLVFP----NQKEADEAFQSLKK--GKKFI 297 +I+ +E YE+ K + +E+++ + KE D+ + +KK G +F Sbjct: 34 DITKEE---FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVDDKEVDKKYDEMKKQLGDQFD 90 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++QG + G + SLA++ Sbjct: 91 TLLKQQGLKEETVKNGVRA--------------SLAQEKAI------------------- 117 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 T++ +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 118 -EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEK 176 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G GK V L + + S+ Y +++ + ++ Sbjct: 177 GGDLGYFTAGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EK 227 Query: 478 KLEEVLTDVKKDWKTVKTAE 497 E+ D+KK+ K + Sbjct: 228 SFEQSKADIKKEIVQKKMQD 247 >gi|228944771|ref|ZP_04107134.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814799|gb|EEM61057.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 287 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGAGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ K+ + Sbjct: 235 IKKEVVAKKSQD 246 >gi|256059916|ref|ZP_05450102.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae 5K33] gi|261323889|ref|ZP_05963086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae 5K33] gi|261299869|gb|EEY03366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae 5K33] Length = 328 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---Q 303 +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA+ Sbjct: 146 KISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLAKASSTD 205 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G + S LG FS+ + + F+L + FGY + + + + + Sbjct: 206 GTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPA 264 Query: 364 FQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRREKIVSID 414 + +VK I + + + E VK+ +E+ + + E S ++ D Sbjct: 265 YDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKDDASEDD 324 Query: 415 LPL 417 P Sbjct: 325 APQ 327 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 151 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 207 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 208 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 267 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 268 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 305 >gi|311233707|gb|ADP86561.1| SurA domain protein [Desulfovibrio vulgaris RCH1] Length = 369 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 81/354 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + + F + ++ + V +++ + + +LD+++S + Sbjct: 85 NRIAAVVNGEMITY--FDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSMISDILI 142 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E + + V E + + ++ + + F +LA++G++ + + + Sbjct: 143 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 198 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++G+ + + + +++E Sbjct: 199 LRHRLLGLM---------------------------------IARKVVVTRDEIAKYYEA 225 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K + + R+ + +FP Sbjct: 226 HKGQFVSGRKVRLGLV----------------------------------------IFPP 245 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337 + +AD +K G F LA + + G D+S+ S K GD Sbjct: 246 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 305 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + V + + + +V ++I N +R K E+++E +L Sbjct: 306 VSRVFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQL 359 >gi|229131944|ref|ZP_04260809.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196] gi|228651535|gb|EEL07505.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196] Length = 286 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 36/243 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ + + + M + E + ++ + V Sbjct: 35 ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVDEKEVDKK 76 Query: 206 ADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D + F+ K E + EK + I++ EL+ Y+ Sbjct: 77 FDEMKKQVGDQFDTLMKQQGLKEETVKNGVRASLAQEKAIEKTITDKELKENYK------ 130 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 PEI+ ++ ++ A + + L +GK F LA++ + LG F+ + Sbjct: 131 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKM 187 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D+ + + KK + + + FGY I V++IK F EVK DI + K Sbjct: 188 VK-EFEDAAYKM-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKT 243 Query: 381 SEK 383 + Sbjct: 244 QDA 246 Score = 40.7 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 46/222 (20%) Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++KE D+ F +KK G +F L ++QG + G + SLA++ Sbjct: 69 DEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRA--------------SLAQEK 114 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 T++ +E+K++ +++ + K + K+++E L Sbjct: 115 AI--------------------EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELG 154 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G S ++++++ + G GK V + + + S+ Sbjct: 155 QGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKMKKDEVSEPVKSQF--- 211 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 Y +++ + + +EV D+KKD KT + Sbjct: 212 -----GYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKTQDA 246 >gi|229149467|ref|ZP_04277703.1| Foldase protein prsA 2 [Bacillus cereus m1550] gi|228634109|gb|EEK90702.1| Foldase protein prsA 2 [Bacillus cereus m1550] Length = 282 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDIKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254 Score = 41.1 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 ++K +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DIKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|34499685|ref|NP_903900.1| survival protein surA [Chromobacterium violaceum ATCC 12472] gi|81711632|sp|Q7NQB0|SURA_CHRVO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|34105536|gb|AAQ61890.1| survival protein surA precursor [Chromobacterium violaceum ATCC 12472] Length = 429 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 58/412 (14%), Positives = 126/412 (30%), Gaps = 60/412 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + + + E L++++L+ +++ Sbjct: 29 DRIVAVVNKNVITWQELQARVNEAIKQLEAQKVAPPPREV-----LERQVLEQMITEEVQ 83 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q+ GL + V +A K NK S ++LA++GI + L Sbjct: 84 LQYAASGGLRIEDAAVDQAVANL----AKQNKLSEAGLKAQLAKDGITLDRLRADIRREL 139 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHVPAIADPSNAVLTQ 215 + + + + S+ +DQA + +Y + L A A + + + Sbjct: 140 TISRLRDSEVASRVNVSDSEVDQAMKSAQSANRTEYHLASILVAVPERADAKQIDQLSQK 199 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEK-------KIEISNDELQAEYEKNKEKYFSP- 267 + D + ++S D K E E+ K + Sbjct: 200 VHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMGWRSATSLPQEFVQLLEQMKVGADTDV 259 Query: 268 ------------------------EIRTVEQLVF---------PNQKEADEAFQSLKKGK 294 E ++ + D+ + +G Sbjct: 260 IRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILIRTNEAVSEADAKARIDQVRDRIMRGA 319 Query: 295 KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 KF +A+ E G + LG + + ++ SL G + + FG+ + Sbjct: 320 KFADMAKLYSEDGSNAKGGDLGWVNMGDLV-PEFEKAMVSLP-IGQVSQPVRTPFGWHLI 377 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V + S K + Q+R K + + ++L + + +DE Sbjct: 378 LVEGKRNQDVSS-DHEKMAVKQQIRARKMEQAYTDWVRQLRDSAFVEEHLDE 428 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 85/273 (31%), Gaps = 35/273 (12%) Query: 152 IDHYTKMLSRT-DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 +M++ + GG+R + +DQA + + L + Sbjct: 71 RQVLEQMITEEVQLQYAASGGLRIEDAAVDQAVANLAKQNKLSEAGLKAQLAKDGITL-- 128 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 D RA + ++ E ++ +S+ E+ + + + Sbjct: 129 -----------DRLRADIRRELTISRLRDSEVASRVNVSDSEVDQAMKSAQSANRT--EY 175 Query: 271 TVEQLVFPNQKEADE------------AFQSLKKGKKFIQLAEEQGKS---LSDISLGSF 315 + ++ + AD A L G+ F +++ + L +G Sbjct: 176 HLASILVAVPERADAKQIDQLSQKVHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMGWR 235 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S +P + + K G T VI G+ I + + + E + Sbjct: 236 SATSLPQEFVQ--LLEQMKVGADTDVIRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILI 293 Query: 376 RITKASEK--VKEDYKRLEEFLALGTSMDEISR 406 R +A + K ++ + + G ++++ Sbjct: 294 RTNEAVSEADAKARIDQVRDRIMRGAKFADMAK 326 >gi|308171963|ref|YP_003918668.1| protein secretion PrsA-like protein [Bacillus amyloliquefaciens DSM 7] gi|307604827|emb|CBI41198.1| putative protein secretion PrsA homolog [Bacillus amyloliquefaciens DSM 7] Length = 296 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 33/245 (13%) Query: 148 EKEYIDHYTKMLSRTDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 E EY + + T VV + SN L+ R I N Sbjct: 56 EDEYGKSTLEDMINTQVVEKLAKKNKLTVSNSELE---------REFLLIKAVNNSFYED 106 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + +I Y + K I+IS+ E+Q+ Y KNKE Y Sbjct: 107 SHITEKEWKD---------------QIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQ 151 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS--KEY 319 + + +V +++EAD LK G F +A E+ LG + +E Sbjct: 152 FDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQEN 211 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 IP + ++ +L + I S GY + + + T S+ EVK I Q+ + + Sbjct: 212 IPPAYITEAK-NLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQ 270 Query: 380 ASEKV 384 +K Sbjct: 271 LGDKA 275 >gi|291286199|ref|YP_003503015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] gi|290883359|gb|ADD67059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio acetiphilus DSM 12809] Length = 318 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 125/387 (32%), Gaps = 100/387 (25%) Query: 15 KIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 KI ++ + + + G + L ++T V++ +++ + Sbjct: 5 KILIITIVLCLSLVSCFPGKAGKKNGLTEEEIANTFVTINGERITKDEYE--------AF 56 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 V+++E + + + + + + L Q G+ D G+ + F Sbjct: 57 ISYSNSVMDTETRTNPAVVEALHKDFIEHRLLLQKAVAEGVVVDEGKFKDIVES---FQT 113 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + F +L D ++L + ++G F+ + S++ Sbjct: 114 IKGQKMLSEFEKQLNMN-------FDSLKELLKQRIIIGKFLEKIADSDI---------- 156 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 D S L ++E+ K+ + Sbjct: 157 -------------------DISEEELKAFYEEKKNEL--------------------NAD 177 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S ++ +V +K A A +K+G F ++AE+ + Sbjct: 178 VSA--------------------HIQHIVTYEEKAAQNALGLIKQGIPFSEVAEKFSVAP 217 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG + PD + +L K G + ++ +GY I + ++ +SF Sbjct: 218 EKEAGGDLGFINVNEYPD--IFKEALAL-KTGQVSGIMKSDYGYHIFKLLEVQKKSGISF 274 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRL 391 +KK + ++ K KV+E L Sbjct: 275 DTLKKKLYAELYGIKQENKVREYIDDL 301 >gi|206977675|ref|ZP_03238567.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97] gi|206744103|gb|EDZ55518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97] Length = 285 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + S+ + + +K K+ Y + + L D + + +I+ Sbjct: 57 YEMIAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVTSPNGYHIIKLTDKKE--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + S+ Sbjct: 232 DEVKDSIRKNLEEERISD 249 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + + Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL-----KVGQISNPVTSPNGYHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + ++ Sbjct: 238 IRKNLEEERISD 249 >gi|229108722|ref|ZP_04238332.1| Foldase protein prsA 2 [Bacillus cereus Rock1-15] gi|228674752|gb|EEL29986.1| Foldase protein prsA 2 [Bacillus cereus Rock1-15] Length = 285 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDIKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 ++K +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DIKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|323489424|ref|ZP_08094653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus donghaensis MPA1U2] gi|323396918|gb|EGA89735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus donghaensis MPA1U2] Length = 296 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 94/238 (39%), Gaps = 37/238 (15%) Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------RAPEYKR--ISYILFDVH 240 I+L + + + ++ + ++ K+ + E + I L Sbjct: 57 ILLIEKVLADKYEVTDKEVDAEYDSNKEELGESFDEFLAQNNQTEESYKKVIRLNLLQEK 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +E++++E+Q Y++ + ++ +++ A+ + L +G F +LA Sbjct: 117 ALTEGVEVTDEEIQDYYDRQGTELN------ARHILVADEETANSLKKQLDEGADFAKLA 170 Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 EE + +L F + ++ + L + + + + +G+ I V Sbjct: 171 EENSTDTGSGANGGNLDWFGPGAMV-PEFEEAAYGL-EVDEISEPVASEYGFHIIQVLEK 228 Query: 357 KPSFTVS-FQEVKKDIANQMRITKA---------SEKVKEDYKRLEEFLALGTSMDEI 404 + ++ K+++ ++ ++KA +E +KE ++++ G +D+I Sbjct: 229 RQIEDQPALEDQKEELRTELALSKADQTTLLPKVAELMKEANVKIKDEDLEGA-LDDI 285 >gi|46580310|ref|YP_011118.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449727|gb|AAS96377.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 348 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 81/354 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + + F + ++ + V +++ + + +LD+++S + Sbjct: 64 NRIAAVVNGEMITY--FDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSMISDILI 121 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E + + V E + + ++ + + F +LA++G++ + + + Sbjct: 122 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 177 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++G+ + + + +++E Sbjct: 178 LRHRLLGLM---------------------------------IARKVVVTRDEIAKYYEA 204 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K + + R+ + +FP Sbjct: 205 HKGQFVSGRKVRLGLV----------------------------------------IFPP 224 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337 + +AD +K G F LA + + G D+S+ S K GD Sbjct: 225 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 284 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + V + + + +V ++I N +R K E+++E +L Sbjct: 285 VSRVFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQL 338 >gi|313617659|gb|EFR89948.1| foldase protein PrsA [Listeria innocua FSL S4-378] Length = 291 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 26/207 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F++YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANAD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 175 Query: 308 SDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + D + + ++L KGD + + +GY I + KP+ +F Sbjct: 176 ATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTTF 233 Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390 + KK + + +E +++ K+ Sbjct: 234 DKDKKAVKESYLASQLTTENMQKTLKK 260 >gi|153007317|ref|YP_001381642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] gi|152030890|gb|ABS28658.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] Length = 317 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 48/363 (13%), Positives = 105/363 (28%), Gaps = 94/363 (25%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 S V V + + ++ ++ G V L +++LD LV Sbjct: 29 GSPPAPPAVALVNGEPIGADVLARELREASAGDARGDGGDV---------LRRRLLDELV 79 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 L Q + +V F ++ F LA++ +++ + Sbjct: 80 DRTLLLQEARARSIVVGQDQVER------AFLRVRAEYPGTHFDDLLAQQRLSQADLKAR 133 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 L+ + V S+A + Sbjct: 134 LADQLTVERLFE---------------------------------EQVYPQVQVSDAEIQ 160 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++F + + PE V Q Sbjct: 161 RYFADHAAEFEEPEKV----------------------------------------HVLQ 180 Query: 275 LVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIF 330 +V +++EA + L + + F ++A + + LG + + D F Sbjct: 181 VVVASKEEALAVREKLRRNPQTFAEVARKSSIAPEGKGGGDLGYIGRGSGF-PEVFDVTF 239 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L + V +G+ I V + + + + ++ + DIA ++ K ++ ++ K Sbjct: 240 TLPLN-RVSDVTPSPYGFHIFKVVDRRAAQRRTLEQARGDIAAKLAREKRAQVQQDYVKG 298 Query: 391 LEE 393 L E Sbjct: 299 LRE 301 >gi|317485407|ref|ZP_07944286.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923366|gb|EFV44573.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 308 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 47/377 (12%), Positives = 117/377 (31%), Gaps = 86/377 (22%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 ++ FL++ L + + + V + + +F + + + + ++ Sbjct: 3 IVSTAFLLFFLITSPVRAAINGVAAVVNGEMIT--AFDLQAETAPEAMRRGLNPKDPNQA 60 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 A L K L+ +++ L Q + + + V EI + NK + + F Sbjct: 61 AAIEELTKATLERMINNIILTQEAQRLKISVGDSEVDNEIQQIMS----RNKMTPEEFQR 116 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 +L + EK++ + + R ++ VG Sbjct: 117 QLQIQRTTEKDFRERIRSSILRNRLLANMVG----------------------------- 147 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + + ++ ++K + Sbjct: 148 ----RKVIVTKEEIADYYNQHKQTFM---------------------------------- 169 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSF 315 + + +V+P + A+ ++ GK F Q A + ++ +G Sbjct: 170 ------NNQKVRFAVIVYPPTENAEAQAARIRSGKLSFEQAARQVSVGPRAQEGGDVGVV 223 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQ 374 + D + D + L K GD + + + G + +++ + +E I Sbjct: 224 DWNSL-DPTWQDRLSQL-KPGDVSGLFEVNNGLKGQLKLLSMESGDGQTLEEATPQIERI 281 Query: 375 MRITKASEKVKEDYKRL 391 +R K E+ +E ++L Sbjct: 282 LREPKLQERFREYSEQL 298 >gi|227823202|ref|YP_002827174.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium fredii NGR234] gi|227342203|gb|ACP26421.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium fredii NGR234] Length = 284 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 4/136 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ +E++A Y+K + E ++ + EA + L GK F++LA+ + Sbjct: 115 AVTKEEVKARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDAGKSFVELAKAKSTD 174 Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 LG F+K + + F+L K + FG+ + V + +P Sbjct: 175 PNKDDGGDLGYFTKGRMV-PEFETAAFALEKGTYTKTPVKSQFGFHVILVEDKRPQAPPP 233 Query: 364 FQEVKKDIANQMRITK 379 ++V+ + + K Sbjct: 234 LEQVEPQVRQLIMRDK 249 Score = 38.4 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 17/139 (12%) Query: 365 QEVKKDIANQMRITKASEKVK---------EDYKRLEEFLALGTSMDEISRREKIVSIDL 415 +EVK ++ A E+VK ++ K + + L G S E+++ K + Sbjct: 119 EEVKARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDAGKSFVELAKA-KSTDPNK 177 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 G KG+ V + F + V G ++ + +++ P Sbjct: 178 DDGGDLGYFTKGRMV------PEFETAAFALEKGTYTKTPVKSQFGFHVIL-VEDKRPQA 230 Query: 476 DRKLEEVLTDVKKDWKTVK 494 LE+V V++ K Sbjct: 231 PPPLEQVEPQVRQLIMRDK 249 >gi|89890152|ref|ZP_01201663.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Flavobacteria bacterium BBFL7] gi|89518425|gb|EAS21081.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Flavobacteria bacterium BBFL7] Length = 704 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 106/737 (14%), Positives = 226/737 (30%), Gaps = 156/737 (21%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR S+ + + + + F+I GL + + +S++ SVG ++ ++ Sbjct: 4 LGKIR--SQGLILILVIALALFAFIIQGLLTS-NGAAKASSLGSVGSTEIDRE----AFG 56 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + Q+ G ++ +A + D ++ D A L+ I + G+E V ++ Sbjct: 57 RRVEATMQQRGAGTSTVQAVNSVWDAEVRD-----AVLNMQINEAGIEVSDEAVKNQVKS 111 Query: 122 S----PLFHGKDNKFSH---DVFVSRLAREGINEKEY------IDHYTKMLSRTDVVGMF 168 P+F ++ +FS + FV+ L + Y +++ +T + Sbjct: 112 MYANAPIFLDENGQFSEIKMNTFVADLKNN--QPERYQLWLQDVENAADQSKQTQFFNLL 169 Query: 169 VGGMRP----------------------------------------SNLLLDQAKRFYF- 187 G+ S+ + +F Sbjct: 170 KSGIIGTQAAGEMEYRLANDNRSFTFVNIPYTSIADTEVEISKSEISSYIAKNESKFKSD 229 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEY-------------- 229 R + Y+V ++ A A L+ + E ++ R Y Sbjct: 230 AQRDIQYVVFEDKASEADKAKMKADMTKLLSSYEEFNENTNRTETYPGLDKVEDVETFVN 289 Query: 230 ------KRISYILFDVHEKEKKIEISNDELQAE--YEKN--------KEKYFSPEIRTVE 273 SY+L K + +E YE ++K + + Sbjct: 290 SESDVPYDGSYLLTSKLPATAKAIAALEEGATYGPYEDAAYMKISRLEDKKTIMDSVQTK 349 Query: 274 QLVFP-----------NQKEADEAFQSL-----KKGKKF----------IQLAEEQGKSL 307 ++ ++++A + S+ + KF ++A+ G+ + Sbjct: 350 HILVAYAGATRSASTRSKEDAKKVADSIFATIGQSNSKFNTKWDYFNENTEIAK--GEDI 407 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + ++ + P + F + SFGY I H+ + K + V Sbjct: 408 GWVVYSGNARNFAPGFTK----FLFENDKGSVGISESSFGYHIIHIQDTKAPT----EAV 459 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 K IA + AS+ + + G + + + K ++D+ V Sbjct: 460 K--IATIAKKVDASKATGKQLFTDAQKFQQGAADKDFTEVAKEFTLDVKPVKN--LKAMD 515 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 + + + ++ F + + P+G Y+ VQ+ A EE V Sbjct: 516 ENLPGLQRNRSIVQWAFKEGTDIGDTERFETPEG-YVIVQLTRKAEAGLMSAEEASATVT 574 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 + K A+ + + DI G + +NR G + Sbjct: 575 PILRNKKKAKMIMDQITA---------TEVNDIASAQGLNARAATAVNRKSPTIPGVGEE 625 Query: 548 G--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKDLLD 604 + F PI V KVT + P + + + Sbjct: 626 PKVVGTAFGLAEGET-SKPIAGEKGVFVVKVTAIENAPDLGSYKADANEVASRTANQATS 684 Query: 605 SVIAYLKSQYSVTVHDN 621 ++ LK +T + + Sbjct: 685 KLVEALKKSIEITDNRS 701 >gi|171910875|ref|ZP_02926345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium spinosum DSM 4136] Length = 344 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 55/358 (15%), Positives = 115/358 (32%), Gaps = 71/358 (19%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 + + S + V V + V S + + + + + N + AR L + L Sbjct: 20 SSAVAQSSNGIAVVVNGKVVTKSEVKEAVEAQ-EQLIRMTVRDPNEQTARLAQLREGALY 78 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAREGINEK 149 L+ + + +G + +I + F + + F+ LA+ G+ K Sbjct: 79 ALIERQLVLSEFDKLGGSIKPQYIDDDINGI-----VRDNFEGNREKFLMELAKTGMTLK 133 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209 ++ + KM+ + VL R +A P+ Sbjct: 134 KFREQRQKMMVVS---------------------------------VLRARQTKDLAPPT 160 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 A + +++ K D +R +Y + S I + S + Sbjct: 161 PAQVEEFYRKNADKFRDKDYIKFSTITI-PKYPIGNVGASPE------------------ 201 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLAD 327 +K A+E + G F LA+ + S G + + +A+ Sbjct: 202 --------SQKKLAEEIRGKVTNGSDFANLAKTYSQDSRAESGGDWGLQERATLSREIAE 253 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 F+L K G + V+ Y+I + +P ++V+ I ++ + V Sbjct: 254 VAFAL-KVGGVSRVVEIGGNYMIIYCEAKQPGNMEPLEKVRPQIEKFIQSEQGRNAVN 310 >gi|83591735|ref|YP_425487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum rubrum ATCC 11170] gi|83574649|gb|ABC21200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum rubrum ATCC 11170] Length = 308 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 77/170 (45%), Gaps = 8/170 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 ++++ ++A Y + K ++ + ++ + A +A + ++ G F +LA E Sbjct: 119 DEDVTDAAVKARYNEMKAEFKPEKEVHARHILLETEDAAKDAIKKIEGGADFTKLASELS 178 Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360 + + LG F+K+ + A++ F++ K G+ + FG+ + + ++ + Sbjct: 179 TGPSAQTGGDLGFFTKDRMV-APFAEAAFAM-KVGEVSKAPTKTEFGWHVIKIEEVRDTT 236 Query: 361 TVSFQEVKKDIANQMRITKASEKVK--EDYKRLEEFLALGTSMDEISRRE 408 +E++ I +++ + V ++ +++ F A G + E ++ Sbjct: 237 FPPVEEMESHIRDELANAAVEKNVAGLKESAKVKLFAADGKTTLEEAKAA 286 >gi|253995959|ref|YP_003048023.1| SurA domain-containing protein [Methylotenera mobilis JLW8] gi|253982638|gb|ACT47496.1| SurA domain protein [Methylotenera mobilis JLW8] Length = 434 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 59/415 (14%), Positives = 140/415 (33%), Gaps = 64/415 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + ++ +E + L K+IL+ L+S A Sbjct: 31 DRIVAIVDQSVITEQELESRIVSLSAQLKKQ-----GTELPEASILRKQILERLISDALQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q+ G++ D ++ I R + NK + F L ++GI+ +++ + Sbjct: 86 LQYAAQTGIKVDDMQLDKTIERI----AEQNKMTVREFYDALNQDGISVRKFRSDIRNEI 141 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + + + S +D N++ D +++ + D + + + Sbjct: 142 TIARLREREVESRVNVSESEIDNYLTTQASTNQNQDEYEISHILIRVPEDAATEDVQKAK 201 Query: 218 EKYKDNYRA----------------------------PEYKRISYILFDVHEKEKKIEIS 249 K + + A + ++ + D + +K E+S Sbjct: 202 TKVDEIFAALASGTSFAKVSASFSDAPNALEGGNIGWKQGAQMPALFLDALKAMQKGEVS 261 Query: 250 NDELQAEYEKNKEKYFSP---------EIRTVEQLVFP-----NQKEADE----AFQSLK 291 L++ + K E ++ ++K+A + L Sbjct: 262 -AALRSPNGFHILKLTDKRGGSSPLIIEQTHARHILIKLSEVMSEKDAKTKMDGIKERLD 320 Query: 292 KGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+KF LA E G + + LG + ++ SL + + + + FG+ Sbjct: 321 NGEKFEVLARQFSEDGTASNGGDLGWVNPGDTV-PQFEKAMNSL-QPNEISAPVLSPFGW 378 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + V K +S + + ++R KA E ++ + L + + +++ Sbjct: 379 HVIQVLERKK-QDMSKEAARLKARQEIRARKADEAYQDWIRELRDRAFVELRLED 432 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 135/404 (33%), Gaps = 46/404 (11%) Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 D V+ + + I E+E + + S L +R + + Y Sbjct: 31 DRIVAIVDQSVITEQELESRI--VSLSAQLKKQGTELPEASILRKQILERLISDALQLQY 88 Query: 195 IVLN---------NRHVPAIADPSNAVLTQWFEK-YKD-----NYRAPEYKRISYILFDV 239 ++ + IA+ + + ++++ +D +R+ I+ Sbjct: 89 AAQTGIKVDDMQLDKTIERIAEQNKMTVREFYDALNQDGISVRKFRSDIRNEITIARLRE 148 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAF 287 E E ++ +S E+ + + + ++ ++A DE F Sbjct: 149 REVESRVNVSESEIDNYLTTQASTNQNQDEYEISHILIRVPEDAATEDVQKAKTKVDEIF 208 Query: 288 QSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +L G F +++ +L ++G +P + D++ ++ +KG+ + + Sbjct: 209 AALASGTSFAKVSASFSDAPNALEGGNIGWKQGAQMPAL-FLDALKAM-QKGEVSAALRS 266 Query: 345 SFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 G+ I +++ + + E + I ++ + + K ++E L G + Sbjct: 267 PNGFHILKLTDKRGGSSPLIIEQTHARHILIKLSEVMSEKDAKTKMDGIKERLDNGEKFE 326 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 ++R+ + G +P E+ + + ++ L Sbjct: 327 VLARQFS----EDGTASNGGDLGWVNPGDTVPQFEKAMNSL-----QPNEISAPVLSPFG 377 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + +Q+ E +D E +++ + K E +L Sbjct: 378 WHVIQVLERK-KQDMSKEAARLKARQEIRARKADEAYQDWIREL 420 >gi|30019316|ref|NP_830947.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579] gi|229126572|ref|ZP_04255586.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4] gi|46396826|sp|Q81GN0|PRSA2_BACCR RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|29894859|gb|AAP08148.1| Peptidyl-prolyl cis-trans isomerase [Bacillus cereus ATCC 14579] gi|228656961|gb|EEL12785.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4] Length = 285 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254 Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|46201262|ref|ZP_00208032.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magnetotacticum MS-1] Length = 273 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 74/185 (40%), Gaps = 11/185 (5%) Query: 231 RISYILFDVHEKEKKI--EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 R+ L +KK+ I+ + ++A Y++ + + E ++ ++ A Sbjct: 91 RVEIQLMAQALMQKKVRGAITEEAVKARYDQAVKNFQPQEEVHARHILVETEESARSIIA 150 Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIH 343 L +G+ F +LA+ + K LG F + + + F++ + G+ + + Sbjct: 151 DLNRGQDFGELAKSRSKDTGSGAMGGDLGYFVQGAMV-PEFSTVAFAM-RPGEVSKTPVK 208 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSM 401 FGY + V + + + + + K IA Q+ + V + + + GT + Sbjct: 209 TQFGYHVIKVEDKRMATIPPYDQAKPVIARQIADELQEKMVVDLRDKAKIKRFKPDGTPL 268 Query: 402 DEISR 406 D + Sbjct: 269 DAAKK 273 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 56/148 (37%), Gaps = 11/148 (7%) Query: 480 EEVLTDVKKDWKTVKTAEEVSSK---------ANQLVLEYSKEGKNFRDIGKNLGASLLT 530 E V + K + EEV ++ A ++ + ++ G++F ++ K+ + Sbjct: 113 EAVKARYDQAVKNFQPQEEVHARHILVETEESARSIIADLNR-GQDFGELAKSRSKDTGS 171 Query: 531 TNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 + + + F+ V P++ Y V KV + ++ + D+ Sbjct: 172 GAMGGDLGYFVQGAMVPEFSTVAFAMRPGEVSKTPVKTQFGYHVIKVEDKRMATIPPYDQ 231 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + + +L + ++ L+ + + Sbjct: 232 AKPVIARQIADELQEKMVVDLRDKAKIK 259 >gi|332521072|ref|ZP_08397530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola 5H-3-7-4] gi|332043165|gb|EGI79362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola 5H-3-7-4] Length = 676 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 66/408 (16%), Positives = 145/408 (35%), Gaps = 54/408 (13%) Query: 15 KIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 KI ++ L F ++ + L + + +V V S F+ + + L ++ ++ Sbjct: 31 KIVFLMNFKFLIKCFYLYFATTLLANAQQEEVIFTVEDTPVLASEFLRVYNKNLDLVKEE 90 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 V+ L + Q + + L+ + F G Sbjct: 91 SQKDVD-----------GYLKLFIEYKLKLQEAKALNLDKKPSYIRE-------FQG--- 129 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTK---MLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + + + + L + + + Y + + + ++ P + L + Sbjct: 130 -YKNQLSKNYLNDSKVTDALVEEAYARLANEIKASHILVKIDQDASPKDTLAAYNEILKL 188 Query: 188 ENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 R V Y + V L +F ++ Y + K Sbjct: 189 RERVVQEGYKKV-QSDVHNGKTIFAEDL-GYFSA----------FKMVYPFENAAYNTKV 236 Query: 246 IEIS-NDELQAEYEKNK--EKYFSPEIRTVEQLVFP-NQKEADEAFQSLKKGKKFIQLAE 301 +IS + + Y K +K S TV ++ ++++ E ++ L++G++F LA+ Sbjct: 237 NDISMPFKTRFGYHVVKVFDKRKSQGEITVAHIMIENDEEKIKEIYKRLEQGEQFQALAK 296 Query: 302 EQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + S S G FS + F++ GD++ FG+ I + N K Sbjct: 297 QFSEDKSSSSKGGELKPFSGGQLSSPEFEAVAFAIKNPGDYSKPFKTQFGWHIVKLINKK 356 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEI 404 P F+E+K ++ N++R S+ + + K L+E + + D + Sbjct: 357 P--LPDFKEIKAELINKIRRDSRSKVINDSRVKALKEKYKITKNPDAL 402 Score = 47.7 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 5/181 (2%) Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND--ELQAEYEKNKEKYFSPEIRT 271 KD + E + +LFD+ E E ND ++ Y K+K+ YF + Sbjct: 481 QNLINDNKDYAQIVEEYKDGLLLFDLMETEIWNAAKNDTLAVKTFYSKHKQNYFYKKRIN 540 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 +++ + + LK+ + + +E + ++I + S E + Sbjct: 541 AIVASSAKKEDIKKVAKLLKQNQPIEAIKKEVN-TNNEIKVSFTSGELNYNHQALPKALK 599 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K + + + YV+ + ++ P +F+E K + + + K + +K + Sbjct: 600 FKKG--VSKIYKHNQAYVVVLIKDLLPESQQTFEEAKGKVMSDYQEIKEANWLKVLASKY 657 Query: 392 E 392 + Sbjct: 658 K 658 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 17/164 (10%) Query: 364 FQEVKKDIANQMRIT-KASEKVKEDYKR-------LEEFLALGTSMDEISRREKIVSIDL 415 F ++ +I N + A + +K+ + +A ++I + K++ + Sbjct: 504 FDLMETEIWNAAKNDTLAVKTFYSKHKQNYFYKKRINAIVASSAKKEDIKKVAKLLKQNQ 563 Query: 416 PLVDFAGKDVKGKEVA------AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 P+ + E+ + Y Q L + +SK + + +Y+ V IK Sbjct: 564 PIEAIKKEVNTNNEIKVSFTSGELNYNHQALPKALKFKKGVSK---IYKHNQAYVVVLIK 620 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 + +P + EE V D++ +K A + A++ +E +K+ Sbjct: 621 DLLPESQQTFEEAKGKVMSDYQEIKEANWLKVLASKYKVEINKD 664 >gi|17546463|ref|NP_519865.1| isomerase rotamase signal peptide protein [Ralstonia solanacearum GMI1000] gi|17428761|emb|CAD15446.1| putative isomerase rotamase signal peptide protein [Ralstonia solanacearum GMI1000] Length = 255 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K ++D+L+ +YEK K ++ + + ++ + +A LK G F ++ Sbjct: 92 EDYVKNSPTTDDDLRKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 151 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG+ T + FG+ + + + Sbjct: 152 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDDT 211 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + +F++VK + M + K + K L E Sbjct: 212 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 251 >gi|114331519|ref|YP_747741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] gi|114308533|gb|ABI59776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas eutropha C91] Length = 264 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 93/231 (40%), Gaps = 8/231 (3%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR---HVPAIADPSNAVLTQWFEKYKDNYR 225 V G+ LD + D + N ++ + + + ++ D Sbjct: 33 VNGIAIPQSRLDLVIKAATAQGQPDSAEMRNALRENLITEEVLTQEAIKKGLDRNPDVVT 92 Query: 226 APEYKRISYILFD-VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + R ++ + + +S+DEL+ EYE K + E + ++ ++EA Sbjct: 93 QIDLARQGILIRAYQADFMRNNPVSDDELRKEYESVKSQMGDKEYK-ARHILVETEQEAK 151 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPV 341 + SLKKG F +LA E+ S G +S + +D++ L K + Sbjct: 152 DLVASLKKGGVFEKLAGERSIDTGSKSNGGELGWSSAAVYVKPFSDALTKLKKGETTSQP 211 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FG+ + + +++ + SF EVK+++ ++ K + V+ K + Sbjct: 212 VQTPFGWHVIRLDDVRTAVPPSFDEVKQNMQQRVLQRKFAAVVESLRKNAK 262 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 3/143 (2%) Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 ++ E V + + K++K E +A LV K G F + + + Sbjct: 123 KEYESVKSQMGDKEYKARHILVETEQEAKDLVASLKKGG-VFEKLAGERSIDTGSKSNGG 181 Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + + + + P++ + V ++ + + D+ + Sbjct: 182 ELGWSSAAVYVKPFSDALTKLKKGETTSQPVQTPFGWHVIRLDDVRTAVPPSFDEVKQNM 241 Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617 Q + + +V+ L+ V Sbjct: 242 QQRVLQRKFAAVVESLRKNAKVE 264 Score = 38.4 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 12/98 (12%) Query: 21 LFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 L VP + G + S G TV V +P S K + Sbjct: 7 LCVPLAVLGFVCTTPLSAQGGGTVAKVNGIAIPQSRLDLVIKAATAQ-----------GQ 55 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 S + + +NL++ L Q GL+ + V Sbjct: 56 PDSAEMRNALRENLITEEVLTQEAIKKGLDRNPDVVTQ 93 >gi|226942107|ref|YP_002797181.1| SurA [Laribacter hongkongensis HLHK9] gi|226717034|gb|ACO76172.1| SurA [Laribacter hongkongensis HLHK9] Length = 434 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 54/416 (12%), Positives = 132/416 (31%), Gaps = 68/416 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V +Q + + ++ ++++ + L +++L+ +++ Sbjct: 34 DRIVAVVNKQAITQQALDTRVREAEAQLTRQ-----KVPLPPAGVLQQQMLERMINEEVQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q+ + G+ D + + R + N+ + + F +RL +GINE + ++ + Sbjct: 89 LQYAGNNGIALDSAELDRIMDRL----AEQNRLTPEQFRARLKADGINEAAFRADLSRQV 144 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSN------- 210 + V + S+ +D R NR+ + +P A P Sbjct: 145 ILDRLREREVDSKVNVSDSEVDAVLRSAVSANRTEFRLSHILITLPEQASPQEVAKRQQR 204 Query: 211 --------------AVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEK--- 242 A + + +D R P + + Sbjct: 205 ASDAAAKLAAGAPFAQVAASYSDAQDALSGGDLGWRSATRLPPVFVAALEQLKPGQSTQV 264 Query: 243 ---EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-----FPNQKEAD----EAFQSL 290 + I E + +++ E R V ++ + K+A + + Sbjct: 265 LRSANGLHILKLEAR----RSRGDAQMVEQRQVRHILVRANEITSDKDAQTRILQIRDRI 320 Query: 291 KKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F + A+ E G + LG + + + +L G + + FG Sbjct: 321 ANGMPFAEAAKLYSEDGSAPKGGDLGWVNPGDMV-PEFERAYLALP-VGQLSQPVRSPFG 378 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + + V + + +I ++R K+ + E ++L + + + Sbjct: 379 WHLILVDGTRQQDIGD-ARQRAEIRQELRARKSEQVYAEWLQQLRASAYVSERLQD 433 >gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] gi|300074343|gb|ADJ63742.1| peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 7/146 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK +S+ +++AEY+K K + E ++ +++A+ LK G KF L Sbjct: 103 ADYLKKNPVSDADIKAEYDKFKAQAGDKEY-HARHILVDKKEDAEAIIAKLKAGTKFEDL 161 Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A+ + G + + L + +D++ +L KKG+ TP + FG+ + + + Sbjct: 162 AKQSKDTGSAANGGDLDWATPASFVKP-FSDAMVAL-KKGEVTPTPVQTQFGWHVIKLED 219 Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381 ++P+ + EVK IA ++ K Sbjct: 220 VRPAKVPTLDEVKPQIAEALQQKKLQ 245 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 40/118 (33%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 + + ++ K G F D+ K + N + F + + Sbjct: 141 KKEDAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGE 200 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 V P++ + V K+ + + V D+ + + + + L + L+++ V Sbjct: 201 VTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQAYQEQLRAKAKVQ 258 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 11/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 KED + + L GT ++++++ K A + + + Sbjct: 142 KEDAEAIIAKLKAGTKFEDLAKQSKDTG-------SAANGGDLDWATPASFVKPFSDAMV 194 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501 V G + +++++ PA+ L+EV + + + K E++ + Sbjct: 195 ALKKGEVTPTPVQTQFG-WHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQAYQEQLRA 253 Query: 502 KAN 504 KA Sbjct: 254 KAK 256 >gi|254718001|ref|ZP_05179812.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13] gi|265982948|ref|ZP_06095683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13] gi|306839780|ref|ZP_07472581.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653] gi|264661540|gb|EEZ31801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13] gi|306405135|gb|EFM61413.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653] Length = 331 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG F++ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|229084254|ref|ZP_04216537.1| Foldase protein prsA 2 [Bacillus cereus Rock3-44] gi|228699054|gb|EEL51756.1| Foldase protein prsA 2 [Bacillus cereus Rock3-44] Length = 283 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 89/234 (38%), Gaps = 32/234 (13%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD--YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-- 224 V + S + D + E D Y ++ + S+ + + F+K K+ + Sbjct: 30 VATSKVSTIKKDDFDKQLKERYGQDMLYEMMAQDIMTEKYKVSDDEVDKEFKKAKEQFGD 89 Query: 225 -----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 + + + +K K ++ +++A Y+ PEI+ Sbjct: 90 QFKTVLESNRLKDEDDFKDQIRFKLAMDKAIKQSVTEKDVKANYK--------PEIK-AS 140 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSI 329 ++ ++K A++ + L +G F +LA++ + LG F + ++ Sbjct: 141 HILVNDEKTANDIKKQLDEGASFEELAKQHSQDPGSKEKGGDLGYFGPGKMA-SEFEEAA 199 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + L G+ + I S GY I +++ K + EVK I + + +++ Sbjct: 200 YKL-NVGEISKPIKSSHGYHIIKLTDKKE--LKPYDEVKDSIRKDLEEKRLADQ 250 >gi|251772782|gb|EES53344.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum ferrodiazotrophum] Length = 307 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 6/151 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + EIS AEY + K Y +PE V +V ++ E +L G F Sbjct: 132 AEQVAPAPEISRKAALAEYNRRKGHYETPERALVRDIVVRSEDEGKAILTALAAGNSFSA 191 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA---KKGDFTPVIHGSFGYVIAHVSN 355 LA + S G + ++ ++F+LA K G+ +P++ +GY I + Sbjct: 192 LARAKSLSPEGAKGGLLPPYALGEMP---ALFALAFSMKPGEVSPLLSSPYGYHILKLVK 248 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 I PS + F++V+ I +R E + + Sbjct: 249 ILPSADLPFRKVRDRIERHLREKAQREALAQ 279 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-QLLFRV 443 +++ K + LA G S ++R + + + + KG + E LF + Sbjct: 173 EDEGKAILTALAAGNSFSALARAKSL----------SPEGAKGGLLPPYALGEMPALFAL 222 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 P ++ P G Y +++ + +P+ D +V +++ + E ++ Sbjct: 223 AFSMKPGEVSPLLSSPYG-YHILKLVKILPSADLPFRKVRDRIERHLREKAQREALAQ 279 >gi|83950728|ref|ZP_00959461.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM] gi|83838627|gb|EAP77923.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM] Length = 286 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 66/162 (40%), Gaps = 5/162 (3%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + ++++ LQ YE + ++ ++EA + L G F LA+E+ Sbjct: 115 ANVALTDEALQKVYEDTYMTAEAQTEFNAAHILVETEEEAKALIEELNGGADFSALAKEK 174 Query: 304 GKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S L F+ + + + A+++ + +KG + + FG+ + +++ + Sbjct: 175 STGPSGPNGGELDWFAGDMMVEP-FAEAVAKM-EKGAISEPVQTQFGWHVIKLNDTRTKE 232 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 +EV+ ++ +R + + + + G ++D Sbjct: 233 RPELEEVRAELEEVVRQQAIDAYMTDLSEGAKVDREAGDALD 274 >gi|306843392|ref|ZP_07475993.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1] gi|306276083|gb|EFM57783.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1] Length = 331 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFSRLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG F++ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.5 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|126699161|ref|YP_001088058.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630] gi|255306527|ref|ZP_05350698.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC 43255] gi|115250598|emb|CAJ68422.1| putative peptidylprolyl isomerase [Clostridium difficile] Length = 318 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 118/370 (31%), Gaps = 78/370 (21%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87 +L V + ++ V ++ + + + G ++ G L+ Sbjct: 14 SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146 I+ +V L Q +D GL V + ++K + + + ++ + G+ Sbjct: 74 VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 ++ ++ L+ N + Sbjct: 128 DKDYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + S+ + ++ +K ++ E ++ + + +K++ E + N Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 207 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322 +K G+ F LA++ + LG F+K+ + Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 247 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +F L KK + + V S+GY I V++ + SF E + I + K E Sbjct: 248 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305 Query: 383 KVKEDYKRLE 392 +K+ + + Sbjct: 306 HIKKLNEDAK 315 >gi|255100589|ref|ZP_05329566.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-63q42] Length = 318 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 118/370 (31%), Gaps = 78/370 (21%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87 +L V + ++ V ++ + + + G ++ G L+ Sbjct: 14 SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146 I+ +V L Q +D GL V + ++K + + + ++ + G+ Sbjct: 74 VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 ++ ++ L+ N + Sbjct: 128 DKDYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + S+ + ++ +K ++ E ++ + + +K++ E + N Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 207 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322 +K G+ F LA++ + LG F+K+ + Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 247 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +F L KK + + V S+GY I V++ + SF E + I + K E Sbjct: 248 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305 Query: 383 KVKEDYKRLE 392 +K+ + + Sbjct: 306 HIKKLNEDAK 315 >gi|149917238|ref|ZP_01905737.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis pacifica SIR-1] gi|149821845|gb|EDM81239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis pacifica SIR-1] Length = 441 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 58/369 (15%), Positives = 115/369 (31%), Gaps = 66/369 (17%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 V V + F + + +L + + + + R K I+D L+ L Sbjct: 44 DPVAKVNDVVITGELFHSIYDLKLQKYADRNRDIPKTADRRY---RKSIVDRLIYQEILR 100 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + + D + K + L R G +E+ Y L Sbjct: 101 QEAKKRSIAYDKAELQQ--REDAQ---KRGIKDWEK---HLRRRGESEESLRQLYVAELL 152 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 V+ ++ + +EK Sbjct: 153 ERAVLEA-----------------------------------DGKLAVTDEEIAGEYEKV 177 Query: 221 KDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K NY E R +IL V ++K E P ++ Sbjct: 178 KPNYTKDKERVRARHILIRVGPEQKPAP-------------GEPVPEPTEAQKKEWEEAA 224 Query: 280 QKEADEAFQSL-KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 K+A+E + +G F QLA E + LG F+ + + + +D+ F+L + Sbjct: 225 LKKAEEIYAKASAEGADFAQLAIELSEGPSARKGGDLGIFAADRMVE-EFSDAAFTL-EP 282 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + + FG+ I V + + ++ + ++ K + ++ + L E Sbjct: 283 GEVSKPVKTKFGFHIIKVEGKYAPGELPIEALEDQLRERLSARKLHQGRRDLKESLLESY 342 Query: 396 ALGTSMDEI 404 A+ M++ Sbjct: 343 AVENHMEKA 351 >gi|254708930|ref|ZP_05170741.1| parvulin-like PPIase precursor [Brucella pinnipedialis B2/94] gi|256030456|ref|ZP_05444070.1| parvulin-like PPIase precursor [Brucella pinnipedialis M292/94/1] gi|261316430|ref|ZP_05955627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis B2/94] gi|265987500|ref|ZP_06100057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M292/94/1] gi|261295653|gb|EEX99149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis B2/94] gi|264659697|gb|EEZ29958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M292/94/1] Length = 328 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 20/249 (8%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + +++ + + A+ T+ F+ E+ R + + Sbjct: 87 QFARLPVEQRRLA-ALIDIKAMAGEAEKDKLDQTKEFKDRM------EFLRERALHNEYF 139 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 140 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 199 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 200 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 258 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 259 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 318 Query: 409 KIVSIDLPL 417 D P Sbjct: 319 DASEDDAPQ 327 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 151 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 207 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 208 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 267 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 268 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 305 >gi|299066760|emb|CBJ37954.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia solanacearum CMR15] Length = 265 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K ++D+L+ +YEK K ++ + + ++ + +A LK G F ++ Sbjct: 102 EDYVKNSPTTDDDLRKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG+ T + FG+ + + + Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDDT 221 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + +F++VK + M + K + K L E Sbjct: 222 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQTMLKDLREK 261 >gi|229165978|ref|ZP_04293743.1| Foldase protein prsA 1 [Bacillus cereus AH621] gi|228617531|gb|EEK74591.1| Foldase protein prsA 1 [Bacillus cereus AH621] Length = 286 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 34/242 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ + + + M + ++ +N VD ++ + Sbjct: 35 ITKEEFYNQMKTQAGKQVLNNMVM-------------EKVLIKNYKVDEKEVDKKFDEMK 81 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + K E + E+ + I++ EL+ Y+ Sbjct: 82 KQVGDQ----FDTLMKQQGLKEETVKNGVRASLAQEQAIEKTITDKELKENYK------- 130 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321 PEI+ ++ ++ A + + L +GK F LA++ + LG F+ + Sbjct: 131 -PEIK-ASHILVKDEATAKKVKEELGQGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMV 188 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D+ + + KK + + + FGY I V++IK F EVK DI + K Sbjct: 189 K-EFEDAAYKM-KKDEVSEPVKSQFGYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKTQ 244 Query: 382 EK 383 + Sbjct: 245 DA 246 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 46/222 (20%) Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++KE D+ F +KK G +F L ++QG + G + SLA++ Sbjct: 69 DEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRA--------------SLAQEQ 114 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 T++ +E+K++ +++ + K + K+++E L Sbjct: 115 AI--------------------EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELG 154 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G S ++++++ + G GK V + + + S+ Sbjct: 155 QGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKMKKDEVSEPVKSQF--- 211 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 Y +++ + + +EV D+KKD KT + Sbjct: 212 -----GYHIIKVTDIKE--QKPFDEVKGDIKKDLVQKKTQDA 246 >gi|220919568|ref|YP_002494872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957422|gb|ACL67806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 317 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 53/380 (13%), Positives = 110/380 (28%), Gaps = 96/380 (25%) Query: 20 VLFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 +L L G + SG V V + + + + + Sbjct: 8 ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIAPDAVARELRDAQAGAEGQ----- 62 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 +A L +++LD+LV A L Q + +V R F Sbjct: 63 --GQATGDVLRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRA-EYPGTHFDD- 118 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 LA+E +++ E L+ + Sbjct: 119 ----LLAQERLSQAELKARLKDQLTVERLFEQ---------------------------- 146 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 V +A + +++ ++ ++ PE Sbjct: 147 -----EVFPQVQVVDAEVERYYAEHGAEFQEPERV------------------------- 176 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEEQGKSL---SDIS 311 V Q+V +++EA + + L + + F ++A + S Sbjct: 177 ---------------HVLQIVVASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKSGGD 221 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG + + D+ FSL + V +G+ + V KP+ + ++ + +I Sbjct: 222 LGLIGRGAGF-PEVFDTCFSLP-VNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEI 279 Query: 372 ANQMRITKASEKVKEDYKRL 391 A ++ K + E + L Sbjct: 280 AEKLGREKRAGAQAEYLEAL 299 >gi|306842909|ref|ZP_07475545.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2] gi|306286932|gb|EFM58452.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2] Length = 331 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG F++ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|298528166|ref|ZP_07015570.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511818|gb|EFI35720.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 326 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 42/357 (11%), Positives = 112/357 (31%), Gaps = 83/357 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V + + + LG+ + + + +L+ +++ + Sbjct: 42 NRIVAHVNGESITLFDLEKRVEMFLGLFEDISLDELPP--VQQEETRRHVLEQMINDILM 99 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +E + + I R +N + + F L +G++ ++Y D + Sbjct: 100 RQEAERYQIEVRNREIQEHIERVKQ----NNNMNQEEFEQHLRAQGLSLEDYKDQIRDSM 155 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V+ + V + ++V ++ + +++E Sbjct: 156 LRQRVMNIMV------------------QRKTV---------------VTSDRIKEYYED 182 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +++ + LV P Sbjct: 183 NIQDFKKERKVHLKV----------------------------------------LVVPR 202 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS--FSKEYIPDVSLADSIFSLAKKG 336 +EA+ +K+G+ +F + AE + G + +++ ++ + G Sbjct: 203 VEEAETLLDKIKEGEYQFAEAAENYSQGPGASEGGDIGMVRWDRMRPEWREALKNM-EAG 261 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + V+ V I V +EV+++I +++ ++ E + L + Sbjct: 262 EISEPFAMQGQGVLLRVEEIHDEGAVPLEEVEEEIRDELFDKMLEKRFDEYIQGLRD 318 >gi|193211689|ref|YP_001997642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum NCIB 8327] gi|193085166|gb|ACF10442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum NCIB 8327] Length = 439 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 81/514 (15%), Positives = 157/514 (30%), Gaps = 102/514 (19%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 F VL V + GLSDA+ S + V VGR+ + S Sbjct: 5 VFAFFAVLIV--ALAGLSDAIASSAPDKIVAIVGREIILKSQINEQELMYHLQYR----- 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 E GL +KIL N++ L + + + Sbjct: 58 ----ESKNDPGLRQKILKNMIDQKILLTKARIDSISVNEQGIDEMA-------------- 99 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + L + L + +R + ++D +R +F + +V Sbjct: 100 NAKYNA-LRSQ--FPSVSAMEERFSLPVNRLKQDIRDDIR-NQQMVDALRRKHFHDVTVS 155 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDE 252 Y + ++ K ++N + PE +S ++ EI++ E Sbjct: 156 Y----------------DEVMAFYGKERNNLPKVPEMVSVSQLIRYP-------EIADSE 192 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308 + R + ++ Q L+ G F LA E Sbjct: 193 ---------------KQRAMSKI--------QAISQQLQNGADFATLARETSDDPGSREL 229 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT------V 362 LG K + S ++ ++L K G + V+ FGY + + + + Sbjct: 230 GGDLGFVHKGELV-PSFEEAAYAL-KPGQISGVVESRFGYHLIQLIDKEDQSIHVRHILA 287 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 +F K D+ +R+ +A + LA S E++ + Sbjct: 288 AFDRNKTDLPKTVRMLEAIRA---------DILAGKASFAEMAEKYSEDPASKGTGGQVI 338 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGK---DDPLSKDHTVALPDGSYM--WVQIKESIPARDR 477 G+ L ++ G +S+ + G + ++ E +PA Sbjct: 339 SSATGEPFLVFDSLRPDLQKIVGGLKHAGDISQPVKIEPERGPFFYALFRLDERLPAHQL 398 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 E T +++ K E+ + +L E Sbjct: 399 SPERDFTRLEEMAANQKRQEQFEAWIEKLKKEVV 432 Score = 37.3 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 27/276 (9%) Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 V + I ++ + + + L G ++R L Sbjct: 171 PKVPEMVSVSQLIRYPEIADSEKQRAMSKIQAISQQLQNGADFATLARETSDDPGSRELG 230 Query: 419 DFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESI---- 472 G KG+ V + L ++ G + H + L D + ++ + Sbjct: 231 GDLGFVHKGELVPSFEEAAYALKPGQISGVVESRFGYHLIQLIDKEDQSIHVRHILAAFD 290 Query: 473 ------PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526 P R LE + D+ + A + + + +G + I G Sbjct: 291 RNKTDLPKTVRMLEAIRADILA------GKASFAEMAEKYSEDPASKGTGGQVISSATGE 344 Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---- 582 L + + R D + G + S P VK P Y +F++ Sbjct: 345 PFLVFDSL-RPDLQKIVGGLKHAGDI-SQP---VKIEPERGPFFYALFRLDERLPAHQLS 399 Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P ++ + ++ ++ I LK + V V Sbjct: 400 PERDFTRLEEMAANQKRQEQFEAWIEKLKKEVVVRV 435 >gi|228990245|ref|ZP_04150213.1| Foldase protein prsA 2 [Bacillus pseudomycoides DSM 12442] gi|228996340|ref|ZP_04155983.1| Foldase protein prsA 2 [Bacillus mycoides Rock3-17] gi|229004004|ref|ZP_04161808.1| Foldase protein prsA 2 [Bacillus mycoides Rock1-4] gi|228757218|gb|EEM06459.1| Foldase protein prsA 2 [Bacillus mycoides Rock1-4] gi|228763379|gb|EEM12283.1| Foldase protein prsA 2 [Bacillus mycoides Rock3-17] gi|228769484|gb|EEM18079.1| Foldase protein prsA 2 [Bacillus pseudomycoides DSM 12442] Length = 284 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 83/199 (41%), Gaps = 14/199 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + F+K KD + E R+ ++ K+ + Sbjct: 57 YEMMAQDIMTKKYKVSDDEVDKEFKKAKDQFGDQFKTVLESNRLKDEDDFKNQIRFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + ++ +K+ + + PEI+ ++ ++K A++ + L +G F +LA++Q + Sbjct: 117 NEAIKKSITDKDVKANYKPEIK-ASHILVNDEKTANDIKKQLDEGASFEELAKQQSQDPG 175 Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F + ++ + L G+ + I S GY I +++ K + Sbjct: 176 SKENGGDLGYFGPGKMV-PEFEEAAYKL-NVGEISKPIKSSQGYHIIKLTDKKE--LKPY 231 Query: 365 QEVKKDIANQMRITKASEK 383 EVK I + +++ Sbjct: 232 DEVKDSIRKNLEEKLLADQ 250 >gi|116872876|ref|YP_849657.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone) [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741754|emb|CAK20878.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone) [Listeria welshimeri serovar 6b str. SLCC5334] Length = 294 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 27/240 (11%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + L ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKELNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E +++S+ +L+ Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMKVSDSKLKTYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFSDLAKEYSTDTATKTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKR 390 L K D + ++ ++GY + + S+++ K ++ ++ SE + K+ Sbjct: 203 LENKDDISGIVKSTYGYHLIQLVKKTEKG--SYEKEKANVKKAYIKSQLTSENMTAALKK 260 >gi|328551773|gb|AEB22265.1| hypothetical protein BAMTA208_00365 [Bacillus amyloliquefaciens TA208] gi|328910033|gb|AEB61629.1| putative protein secretion PrsA [Bacillus amyloliquefaciens LL3] Length = 296 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 33/245 (13%) Query: 148 EKEYIDHYTKMLSRTDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 E EY + + T VV + SN L+ R I N Sbjct: 56 EDEYGKSTLEDMINTQVVEELAKKNKLTVSNSELE---------REFLLIKAVNNSFYED 106 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + +I Y + K I+IS+ E+Q+ Y KNKE Y Sbjct: 107 SHITEKEWKD---------------QIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQ 151 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS--KEY 319 + + +V +++EAD LK G F +A E+ LG + +E Sbjct: 152 FDDSYRIRHIVVKSKEEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQEN 211 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 IP + ++ +L + I S GY + + + T S+ EVK I Q+ + + Sbjct: 212 IPPAYITEAK-NLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQ 270 Query: 380 ASEKV 384 +K Sbjct: 271 LGDKA 275 >gi|17986407|ref|NP_539041.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. 16M] gi|62290796|ref|YP_222589.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str. 9-941] gi|82700707|ref|YP_415281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis biovar Abortus 2308] gi|189025011|ref|YP_001935779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus S19] gi|254696195|ref|ZP_05158023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 2 str. 86/8/59] gi|254731113|ref|ZP_05189691.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 4 str. 292] gi|260546060|ref|ZP_05821800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus NCTC 8038] gi|260758847|ref|ZP_05871195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 4 str. 292] gi|260760571|ref|ZP_05872914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 2 str. 86/8/59] gi|17982000|gb|AAL51305.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. 16M] gi|62196928|gb|AAX75228.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str. 9-941] gi|82616808|emb|CAJ11900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis biovar Abortus 2308] gi|189020583|gb|ACD73305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus S19] gi|260096167|gb|EEW80043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus NCTC 8038] gi|260669165|gb|EEX56105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 4 str. 292] gi|260671003|gb|EEX57824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 2 str. 86/8/59] Length = 331 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|146278793|ref|YP_001168952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides ATCC 17025] gi|145557034|gb|ABP71647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sphaeroides ATCC 17025] Length = 284 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 5/148 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ LQA Y+ ++ ++EA + ++ G F +A E Sbjct: 118 AVTDEALQAAYDARFADAAEQTEYNASHILVETEEEATKLKAEIEGGADFADMAREHSSD 177 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + SLG F + D++ + K G I FG+ + ++ + + + Sbjct: 178 GAAANGGSLGWFGLGMMVKP-FEDAVVGM-KPGAVAGPIETQFGWHLVKLNETRIAEKPT 235 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 E++ ++A Q+ + + E + Sbjct: 236 LDEMRDELAGQIEQEAIARHIDEVTAKA 263 >gi|228957536|ref|ZP_04119288.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802128|gb|EEM48993.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 285 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254 Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|148558977|ref|YP_001259765.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840] gi|148370234|gb|ABQ60213.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840] Length = 331 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.1 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|254975115|ref|ZP_05271587.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-66c26] gi|255092504|ref|ZP_05321982.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP 107932] gi|255314242|ref|ZP_05355825.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-76w55] gi|255516921|ref|ZP_05384597.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-97b34] gi|255650024|ref|ZP_05396926.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-37x79] Length = 318 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87 +L V + ++ V ++ + + + G ++ G L+ Sbjct: 14 SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146 I+ +V L Q +D GL V + ++K + + + ++ + G+ Sbjct: 74 VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 +++ ++ L+ N + Sbjct: 128 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + S+ + ++ +K ++ E ++ + + +K++ E + N Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 207 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322 +K G+ F LA++ + LG F+K+ + Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 247 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +F L KK + + V S+GY I V++ + SF E + I + K E Sbjct: 248 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305 Query: 383 KVKEDYKRLE 392 +K+ + + Sbjct: 306 HIKKLNEDAK 315 >gi|77164285|ref|YP_342810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|254434865|ref|ZP_05048373.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] gi|76882599|gb|ABA57280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani ATCC 19707] gi|207091198|gb|EDZ68469.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27] Length = 304 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 14/155 (9%) Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---------GKKFIQLAEEQ 303 + Y+ N EKY PE V ++ ++ ++E + L + K F +LA E Sbjct: 131 ARERYQANPEKYQQPERVKVSHILIKTEERSEEEAKKLAEKVRQLALTEEKPFSELALEY 190 Query: 304 GKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + S LG K ++ F+L + G+ +PV+ FG+ I + + Sbjct: 191 SEDPSLEKNKGDLGFIVKGVTTKP-FEEAAFALEQPGEISPVVKSRFGFHIIRLEERQAP 249 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 T SF+EVK+ + ++R T ++ V+ ++ Sbjct: 250 KTKSFEEVKERLVEKIRETHLNQVVQTHLNQIRNA 284 >gi|56476034|ref|YP_157623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] gi|56312077|emb|CAI06722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] Length = 454 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 121/402 (30%), Gaps = 63/402 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V + + +Q + ++++ G L++++L+ LV Q Sbjct: 54 AAVVNNEVITARELRERVEQAIHQLNRQ-GTPQPPADV----LERQLLERLVLERAQLQL 108 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + L+ D + IAR + N+ + + L ++G++ + D+ + T Sbjct: 109 ARETSLQVDEATLERAIARI----AESNRLTIAQLQAALEKDGVSWSRFRDNIRTEILLT 164 Query: 163 DVVG------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--------- 207 + + V N L + A E + +I++ Sbjct: 165 RLREREVDNRIVVTDAEVDNFLANNADALSGEEFELAHILIRVPEAATQQQMAGLVARAE 224 Query: 208 ---------PSNAVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEKEKKIE 247 A + + D R P + + Sbjct: 225 TAKQRLNSGDDFARVAASYSDAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLR 284 Query: 248 ISN-DELQAEYEKNKEKYFSP---EIRTVEQLVFPN-----QKEADE----AFQSLKKGK 294 S + ++ P E ++ EA+ + + G Sbjct: 285 SSAGLHIVKLLDRRGGAAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGA 344 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ LS LG S ++ +L K G+ + + FG+ + Sbjct: 345 SFAELAKAHSADLSSAKGGDLGWLSPGDTV-PEFERTMNAL-KPGEVSAPVRSPFGWHLI 402 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 V + VS + + N +R KA E ++ ++L + Sbjct: 403 QVEARR-LQDVSDERKRNAARNALRERKADEAFEDWLRQLRD 443 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 93/292 (31%), Gaps = 42/292 (14%) Query: 141 LAREGINEKEYIDHYTKMLS------RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 L R+G + D + L R + ++ L++A E+ + Sbjct: 78 LNRQG-TPQPPADVLERQLLERLVLERAQLQLARETSLQVDEATLERAIARIAESNRLTI 136 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 L S +R I E + +I +++ E+ Sbjct: 137 AQLQAALEKDGVSWS-------------RFRDNIRTEILLTRLREREVDNRIVVTDAEVD 183 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEE 302 N + E + ++ + A + A Q L G F ++A Sbjct: 184 NFLANNADALSGEEF-ELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAAS 242 Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357 + +LG S++ +P A+++ L+ G +PV+ S G I + + + Sbjct: 243 YSDAPDAMNGGALGWRSRDRLP-PLFAEAVRELS-PGSVSPVLRSSAGLHIVKLLDRRGG 300 Query: 358 -PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + ++ + I + + + L E + G S E+++ Sbjct: 301 AAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFAELAKA 352 >gi|23502793|ref|NP_698920.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330] gi|163843966|ref|YP_001628370.1| parvulin-like PPIase precursor [Brucella suis ATCC 23445] gi|23348814|gb|AAN30835.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330] gi|163674689|gb|ABY38800.1| Parvulin-like PPIase precursor [Brucella suis ATCC 23445] Length = 331 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.1 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|82703233|ref|YP_412799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] gi|82411298|gb|ABB75407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira multiformis ATCC 25196] Length = 265 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 4/155 (2%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K +S++EL EYE K + E + ++ ++EA + LKKG KF +LA Sbjct: 110 DYIKNHPVSDEELHKEYETVKTQMGDKEYK-AHHILVATEEEAKDIIAKLKKGAKFDKLA 168 Query: 301 EEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 E+ S G +S A+++ L K + FG+ + + +++ Sbjct: 169 GEKSLDTGSKSKGGELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFGWHVIRLDDVR 228 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 P F+E+K+++A ++ + + + + + + Sbjct: 229 PLKIPPFEEIKQNLAQRVLQRQFAASINDLRSKAK 263 Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 52/143 (36%), Gaps = 3/143 (2%) Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 ++ E V T + K++K +A ++ + K+G F + + ++ Sbjct: 124 KEYETVKTQMGDKEYKAHHILVATEEEAKDIIAKL-KKGAKFDKLAGEKSLDTGSKSKGG 182 Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 +D + + + + P++ + V ++ + + + ++ L Sbjct: 183 ELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFGWHVIRLDDVRPLKIPPFEEIKQNL 242 Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617 Q + + + I L+S+ V Sbjct: 243 AQRVLQRQFAASINDLRSKAKVE 265 Score = 38.0 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 9/146 (6%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ VK + + + KA + + ++ +A + + ++ +K+ Sbjct: 124 KEYETVKTQMGD--KEYKAHHILVATEEEAKDIIAK---LKKGAKFDKLAGEKSLDTGSK 178 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 K + A Y + + D V P G + +++ + P + EE Sbjct: 179 SKGGELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFG-WHVIRLDDVRPLKIPPFEE 237 Query: 482 VLTDVKKDWKTVKTAEE---VSSKAN 504 + ++ + + A + SKA Sbjct: 238 IKQNLAQRVLQRQFAASINDLRSKAK 263 Score = 37.3 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 11/88 (12%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 ++ ST+ V +P S + + + + + K + Sbjct: 18 IAATTVQAQTGSTMAKVNGTPIPQS-----------RLEFIMKARASQGQPDTPEARKAL 66 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++L++ + Q + GL+ D + Sbjct: 67 REDLITEEVIAQEAKKKGLDRDPDFITQ 94 >gi|255655579|ref|ZP_05400988.1| putative peptidyl-prolyl isomerase [Clostridium difficile QCD-23m63] gi|296451569|ref|ZP_06893304.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08] gi|296878826|ref|ZP_06902826.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07] gi|296259634|gb|EFH06494.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08] gi|296430098|gb|EFH15945.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07] Length = 318 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87 +L V + ++ V ++ + + + G ++ G L+ Sbjct: 14 SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 73 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146 I+ +V L Q +D GL V + ++K + + + ++ + G+ Sbjct: 74 VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 127 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 +++ ++ L+ N + Sbjct: 128 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 153 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + S+ + ++ +K ++ E ++ + + +K++ E + N Sbjct: 154 NISDNDMEAYYTSHKKDFNVEEISASQILISTLDKNKKEVSKDKKEALKKKADN------ 207 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322 +K G+ F LA++ + LG FSK+ + Sbjct: 208 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFSKDD-KN 247 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +F L KK + + V S+GY I V++ + SF E + I + K E Sbjct: 248 AEFTKEVFKL-KKNEVSKVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 305 Query: 383 KVKEDYKRLE 392 +K+ + + Sbjct: 306 HIKKLNEDAK 315 >gi|162146617|ref|YP_001601076.1| peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5] gi|161785192|emb|CAP54738.1| Peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5] Length = 308 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 6/147 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +++ +QA Y ++ ++ + EA + + LK G F LA + Sbjct: 135 TLTDAAVQAYYTQHYANKKPEAEIHARHILVATEAEAKDVIKQLKAGADFGALATKLSTD 194 Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + LG F K + + +D+ F++ +H +G+ + V + + + Sbjct: 195 KASAKQNGGDLGWFKKGDML-PAFSDAAFAMKPHTFSQTPVHTQYGWHVIEVLDTRTADV 253 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDY 388 V+ +I ++ + V++ Sbjct: 254 PKLDAVRDEIRQKLIQQGVRDAVEKAV 280 Score = 37.7 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 11/87 (12%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V SV + + + + + Q ++ +L+ L+ + Sbjct: 50 VASVNGEDIHLNDVRQAAANMPAQLRQLPPNMIFP----------MLLNQLIDQKAIQAA 99 Query: 103 IEDIGLE-ADHGRVWGEIARSPLFHGK 128 GL+ + A Sbjct: 100 ATHAGLDKQPDVQQQMHAAAMNALQNA 126 >gi|225853381|ref|YP_002733614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis ATCC 23457] gi|254694570|ref|ZP_05156398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 3 str. Tulya] gi|254700583|ref|ZP_05162411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5 str. 513] gi|254707533|ref|ZP_05169361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M163/99/10] gi|254713643|ref|ZP_05175454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1] gi|254716003|ref|ZP_05177814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M13/05/1] gi|256045546|ref|ZP_05448429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. Rev.1] gi|256112274|ref|ZP_05453195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 3 str. Ether] gi|256158440|ref|ZP_05456338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M490/95/1] gi|256253860|ref|ZP_05459396.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94] gi|256263138|ref|ZP_05465670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 2 str. 63/9] gi|256370345|ref|YP_003107856.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915] gi|260169365|ref|ZP_05756176.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99] gi|260562856|ref|ZP_05833342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. 16M] gi|261214896|ref|ZP_05929177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 3 str. Tulya] gi|261217772|ref|ZP_05932053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M13/05/1] gi|261220998|ref|ZP_05935279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94] gi|261315013|ref|ZP_05954210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M163/99/10] gi|261321380|ref|ZP_05960577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1] gi|261751092|ref|ZP_05994801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5 str. 513] gi|261758885|ref|ZP_06002594.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99] gi|265991973|ref|ZP_06104530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. Rev.1] gi|265993706|ref|ZP_06106263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 3 str. Ether] gi|265996958|ref|ZP_06109515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M490/95/1] gi|294851184|ref|ZP_06791857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL 07-0026] gi|225641746|gb|ACO01660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis ATCC 23457] gi|256000508|gb|ACU48907.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915] gi|260152872|gb|EEW87964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. 16M] gi|260916503|gb|EEX83364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 3 str. Tulya] gi|260919582|gb|EEX86235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94] gi|260922861|gb|EEX89429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M13/05/1] gi|261294070|gb|EEX97566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1] gi|261304039|gb|EEY07536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M163/99/10] gi|261738869|gb|EEY26865.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99] gi|261740845|gb|EEY28771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5 str. 513] gi|262551426|gb|EEZ07416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M490/95/1] gi|262764687|gb|EEZ10608.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 3 str. Ether] gi|263003039|gb|EEZ15332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. Rev.1] gi|263093040|gb|EEZ17190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 2 str. 63/9] gi|294819773|gb|EFG36772.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL 07-0026] gi|326409944|gb|ADZ67009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis M28] gi|326539657|gb|ADZ87872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis M5-90] Length = 331 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G KF LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 41.1 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|196037443|ref|ZP_03104754.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99] gi|196031685|gb|EDX70281.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99] Length = 285 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 81/198 (40%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + +K K+ Y E R+ + + K+ + Sbjct: 57 YEMMAQDVITKKYKVSDDDVEKEVQKVKNQYGDQFTAVLENNRLKDEADFKKQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSVTEKDVKAHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDKKE--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + ++ Sbjct: 232 DEVKDSIRKNLEEERIAD 249 Score = 37.7 bits (86), Expect = 7.1, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + V P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEEERIAD 249 >gi|163940109|ref|YP_001644993.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4] gi|229011588|ref|ZP_04168774.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048] gi|229059985|ref|ZP_04197359.1| Foldase protein prsA 1 [Bacillus cereus AH603] gi|229133173|ref|ZP_04262008.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196] gi|163862306|gb|ABY43365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus weihenstephanensis KBAB4] gi|228650299|gb|EEL06299.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196] gi|228719398|gb|EEL71002.1| Foldase protein prsA 1 [Bacillus cereus AH603] gi|228749743|gb|EEL99582.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048] Length = 283 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%) Query: 199 NRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKIEISNDEL 253 N+ + S+ + E K D ++ A E + + +I + Sbjct: 60 NKALLDKYKVSDEEAKKQVEAAKEQMGDKFKVALEQVGLKNEDELKERMKPEIALEKAIR 119 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 +K+ + PE++ V ++ ++K A E + + G+ F LA++ + G Sbjct: 120 ATVTDKDVKDNHKPEMK-VSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTGSKEQG 178 Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 + P ++ + L G + I S+GY I V++ K F EVK Sbjct: 179 GEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTSYGYHIIKVTDKKE--LKPFDEVKDT 235 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 I + + + + +++ L + + K Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKEADIKVTDKEFKDT 276 Score = 40.4 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 126 DVKDNHKPEMKVSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTGSKEQGGEIAGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPIKTSY--------GYHIIKVTDKKE--LKPFDEVKDT 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q++ + KE Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKE 263 >gi|49480029|ref|YP_035403.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331585|gb|AAT62231.1| peptidyl-prolyl cis-trans isomerase (protein export protein) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 285 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K+ Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVDKEVQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K K ++ +++ Y+ PEI+ ++ ++ EA E + L+ G F +LA Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLEAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L K G + + GY I +++ Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KIGQISNPVKSPNGYHIIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERIAD 249 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLEAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + + Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL-----KIGQISNPVKSPNGYHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEEERIAD 249 >gi|154148224|ref|YP_001407264.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] gi|153804233|gb|ABS51240.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] Length = 271 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 ++ I++S+ E++ Y KNK+K+ P ++ + A + L K Sbjct: 101 EKEFNNIKVSDKEIEDFYNKNKDKFIEPASIAASHILVEKEDNAKKIIADLSKLKGDALK 160 Query: 294 KKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KKF ++A+E+ S LG F KE + ++ L K + FGY Sbjct: 161 KKFAEIAKEKSLDPSGKQNGGDLGYFVKEQMV-PEFGEAANKLKKGELTKTPVKTKFGYH 219 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 I ++ K + EVK I N ++ K ++ K L+ Sbjct: 220 IILKNDAKDKKQLDLAEVKDHIKNIVKQEKFQADFEKKIKDLK 262 >gi|229195349|ref|ZP_04322120.1| Foldase protein prsA 1 [Bacillus cereus m1293] gi|228588123|gb|EEK46170.1| Foldase protein prsA 1 [Bacillus cereus m1293] Length = 287 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + F++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKFDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + ++ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ K+ + Sbjct: 235 IKKEIVQKKSQD 246 >gi|149370006|ref|ZP_01889857.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium SCB49] gi|149356497|gb|EDM45053.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium SCB49] Length = 701 Score = 101 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 93/658 (14%), Positives = 203/658 (30%), Gaps = 87/658 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR+ + + +++ F L+D L + GSS V ++ ++ + F Sbjct: 4 LSKIRQKT----VFLIVIIAMALFAFV-LADVLKNGGGSSNKAQTRVATINDTELSQADF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD----H 112 + ++ Q++G + A +V + D V L + E +G+ + Sbjct: 59 MA----QVQSTQQQMGPTATTASAVNV-----VWDREVKRVLLQEEFEKLGIRIEKDQLD 109 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-------EYIDHYTKMLSRTDVV 165 + +A + LF + F + ++ +N Y + + + + + Sbjct: 110 AALAEGLAGNQLFTNELGLFDRNRMNEYISDMKLNNPAAYQQWLTYENGVIQSVLELNYM 169 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNY 224 M GG++ + +Q R+ + + Y+ + + S + + + ++ Sbjct: 170 NMIKGGLKSTLAEGEQQYRYDNDKINFQYVHVPYTSINDTEVAVSEDEIKSYVNDHAADF 229 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 I Y+ FD ++ I L+ K+ Sbjct: 230 EVEAQTDIEYVKFDEIASDEDIAAQEASLKEF--------------------LTAGKDNG 269 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + K + + + + FSK+ ++ AD S + G+ Sbjct: 270 ADRVAFKDAENPEVYVNDYS-DFTYVDRWYFSKDIPAPLTAAD---SDLEVGEVVGPYKN 325 Query: 345 SFGYVIAHVSNIK---PSFTVSFQEVK--KDIANQMRITKASEKVKEDYKRLEEFLA-LG 398 + + V + S S +VK + I + E+ K+ + + Sbjct: 326 VTNFNLTRVLEKRQLADSVQTSHIQVKWAGTLGASSDIVRTKEEAKKRADSIFNVVKRSP 385 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV--FGKDDPLSKDHTV 456 ++ E++ D G E+ + QL + F V Sbjct: 386 STFAEVASA---------TTDDVRNKANGGELGYLNPNVQLPETISEFVLQADKGDMKLV 436 Query: 457 ALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 G ++ +K PA K + ++ + +T EV S +++ K Sbjct: 437 ETEFGYHVLHVTDVKNIQPAY--KFAVISKKIEP---SDETINEVFSVSSKFEDAARKG- 490 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYV 572 +F + ++ N+I +D I+ F E+ YV Sbjct: 491 -DFTAVANESELTVRPVNKIGSLDANIPGLTNSRQIITWSFDEETEVGDVKRFNTPNGYV 549 Query: 573 VFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 V +VT K L L+ + Q T ++ +Q Sbjct: 550 VVRVTRQSPKGVMSVADASAKVTPILRNKKKAALIKEKMNGADLQAIATANNVTVQTA 607 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 25/215 (11%) Query: 272 VEQLVFPNQKEADEAF------QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 + + + P+ + +E F + + F +A E ++ ++ IP ++ Sbjct: 462 ISKKIEPSDETINEVFSVSSKFEDAARKGDFTAVANESELTVRPVNKIGSLDANIPGLTN 521 Query: 326 ADSIF--SLAKKGDFTPVIH--GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + I S ++ + V GYV+ V+ P +S + + +R K + Sbjct: 522 SRQIITWSFDEETEVGDVKRFNTPNGYVVVRVTRQSPKGVMSVADASAKVTPILRNKKKA 581 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 +KE G + I+ + V + G + +++ Sbjct: 582 ALIKEKMN--------GADLQAIATANNVTVQTATAVSMGTPTIPGAG-----AEPKVVG 628 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 FGK+ ++ V + V++ +PA D Sbjct: 629 AAFGKEA--NETTDVLAGNAGVFVVKVLAKVPATD 661 >gi|332525967|ref|ZP_08402108.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2] gi|332109518|gb|EGJ10441.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2] Length = 270 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 4/162 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K +++ + QAEY+K K E R ++ + EA + +K G F +L Sbjct: 108 DSYRKTHPVTDADAQAEYDKFKAAASGTEYR-ARHILVETEDEAKKLIAQIKSGGSFEEL 166 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G F+K + ++ +L K + FG+ I + + Sbjct: 167 AKKHSKDPGSGENGGDLDFAKPDAYVPEFSQAMAALKKGEMTQTPVKSQFGWHIIRLDDT 226 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + +F +VK I ++ + + +E K+ G Sbjct: 227 REAQFPAFDDVKDQIKQRIEQARLQQYQEELRKKARTDYKFG 268 Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 46/130 (35%), Gaps = 2/130 (1%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546 +++ E +A +L+ + K G +F ++ K + +D + + Sbjct: 135 TEYRARHILVETEDEAKKLIAQI-KSGGSFEELAKKHSKDPGSGENGGDLDFAKPDAYVP 193 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 + + + + P+++ + + ++ +++ D + Q + + L Sbjct: 194 EFSQAMAALKKGEMTQTPVKSQFGWHIIRLDDTREAQFPAFDDVKDQIKQRIEQARLQQY 253 Query: 607 IAYLKSQYSV 616 L+ + Sbjct: 254 QEELRKKART 263 >gi|307243271|ref|ZP_07525442.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493399|gb|EFM65381.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM 17678] Length = 255 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEE 302 +EI++DE A YE++K+++ E + + ++ N++ A E + + K + F A E Sbjct: 91 AAVEITDDEKLAYYEEHKDEFKEDESASAKHILVDNEELALEIEKKINKKEVSFEDAAVE 150 Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 S SLG+F + + +++F+L G + + FGY + V + K + Sbjct: 151 YSSCPSKSNGGSLGTFGRGQMV-PEFEEAVFTLP-VGKVSSPVKTQFGYHLILVDDRKEA 208 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + +++ KKD+ + K +E L E Sbjct: 209 RQLEYEDCKKDVEQSLAFKKQNEAFLAKLTDLTEK 243 >gi|196044409|ref|ZP_03111645.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108] gi|196025048|gb|EDX63719.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108] Length = 285 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K ++ Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVEKEVQKVRNQYGDQFTAVLENNRLKDEADFKKQIKFKLAM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K ++ E++A Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NEAIKKSVTEKEVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L K G + + GY I +++ Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERIAD 249 Score = 38.4 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 EVK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 EVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + V P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEEERIAD 249 >gi|224372671|ref|YP_002607043.1| foldase protein PrsA [Nautilia profundicola AmH] gi|223588937|gb|ACM92673.1| foldase protein PrsA [Nautilia profundicola AmH] Length = 286 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 16/188 (8%) Query: 217 FEKYKDNYRAPE-YKRISYILFDVHEKEK--KIEISNDELQAEYEKNKEKYF-SPEIRTV 272 ++K K + P+ + + D K+K ++IS+ E++ YE+NK+ YF + Sbjct: 93 YKKAKSVEKTPQFQALVKKMAVDYWLKQKLNNMKISDAEVKKFYEENKDIYFKTTPKVKA 152 Query: 273 EQLVFPNQKEADEAFQSLKK------GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323 +V ++K A++ LK +KF +LA++ ++ LG F + + Sbjct: 153 RHIVVKDEKTAEKLINELKGLHGKALEEKFAELAKKYSTGPTKVNGGELGWFDPKQMVQP 212 Query: 324 SLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 A+++ + K G+ T + FGY + V + EVK I ++ K + Sbjct: 213 -FAEAVNKM-KPGELTLKPVKTRFGYHVILVEEKNEKNYMPLNEVKLQIIEYLKRAKLQK 270 Query: 383 KVKEDYKR 390 ++++ Sbjct: 271 EIQKLKDS 278 >gi|144900459|emb|CAM77323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetospirillum gryphiswaldense MSR-1] Length = 273 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 7/153 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K EI+ ++A Y+ E ++ + +A LKKG F + A+ + Sbjct: 109 KAEITPAAVKAAYDGYLASAKPEEEVRARHILTETEDQAKAVIAELKKGADFTETAKAKS 168 Query: 305 KSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPS 359 K S LG F++ + + + F++ K GD + + FG+ + V + + + Sbjct: 169 KDPSAKQNGGDLGYFAQGEMV-PQFSSAAFAM-KVGDLSEAPVQSQFGWHVIKVEDRRQA 226 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ I ++ A + V + + + Sbjct: 227 TPPTLEQATPAIREELAEKLAQKLVGDVRSKAK 259 >gi|16800550|ref|NP_470818.1| hypothetical protein lin1482 [Listeria innocua Clip11262] gi|46396989|sp|Q92BR2|PRSA1_LISIN RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|16413955|emb|CAC96713.1| lin1482 [Listeria innocua Clip11262] Length = 294 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 27/253 (10%) Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 35 VTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLS 93 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + Y L E + +S +L+ Y+ + V ++ + Sbjct: 94 SNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPNIT------VRHILVDD 147 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKG 336 + A E LK G+KF LA+E + + G + P D + + ++L K Sbjct: 148 EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKD 207 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEE 393 D + ++ ++GY + + T + ++ I +Q+ + +K++ K Sbjct: 208 DVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANI 267 Query: 394 FLALGTSMDEISR 406 + D + Sbjct: 268 DIKDSDLKDAFAD 280 >gi|319650163|ref|ZP_08004311.1| post-translocation molecular chaperone [Bacillus sp. 2_A_57_CT2] gi|317398145|gb|EFV78835.1| post-translocation molecular chaperone [Bacillus sp. 2_A_57_CT2] Length = 298 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 88/229 (38%), Gaps = 31/229 (13%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN------ 223 G + L + K Y E + I + + + ++ L + ++ K Sbjct: 36 SGNITKDELYEAMKEKYGEQALQELIY--EKVLSDKYEVTDEELNEKIDELKQQLGANFE 93 Query: 224 -------YRAPE--YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 Y+ E + L K IE + E++ Y+ K + Sbjct: 94 MALMQYGYKDEEDLRETFKTGLLQEKAAIKDIEATEKEVKEYYDNYKPEI------KARH 147 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 ++ ++K ADE + L +G KF LA ++ G + + LG F + ++ + Sbjct: 148 ILVEDEKTADEVKKKLDEGGKFEDLATEYSKDPGSAANGGDLGWFGPGKMV-PEFEEAAY 206 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 +L + + + G+ I V+ K SF E+KK++ Q++++K Sbjct: 207 AL-DVNEISAPVKSEHGFHIIQVTEKKEK--KSFDEMKKEMEYQVKVSK 252 >gi|294340130|emb|CAZ88501.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas sp. 3As] Length = 262 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K I++ +++AEY+K + + S E + + ++ P++KEA + LKKG KF +L Sbjct: 105 NAYLQKHPITDAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSEL 163 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A++ K + G P+ A ++ +L K G +T + FG+ + + Sbjct: 164 AKKYSKDTGSAANGGDLGWSTPNNYVPPFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDA 222 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +P+ + ++K I +++ + ++ E + + Sbjct: 223 TRPAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAK 259 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 16/116 (13%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + +V + +P S + ++++ G V L + + + L+S + Sbjct: 23 AQNIATVNGKPIPQSLADSV----ANSMAKQQGQAVTP------QLKEMVKNELISREVM 72 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 Q + +GL+ V EI + N +F + L + I + + Y Sbjct: 73 VQEADKLGLDK-ETAVQDEIRI-----ARQNILIRALFNAYLQKHPITDAQIKAEY 122 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 45/137 (32%), Gaps = 2/137 (1%) Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NE 540 V + ++K +A ++ + K+G F ++ K + + + Sbjct: 126 VKSFGSTEYKAQHILVPSEKEAQDIIAQL-KKGAKFSELAKKYSKDTGSAANGGDLGWST 184 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + + + P+++ + V K+ ++ D+ + + + Sbjct: 185 PNNYVPPFAKALEALKPGQYTQTPVQSQFGWHVIKLDATRPAKAPTLDQLKPQIQAELQR 244 Query: 601 DLLDSVIAYLKSQYSVT 617 + L+++ +T Sbjct: 245 QEVTKYQDELRAKAKIT 261 >gi|291612516|ref|YP_003522673.1| SurA domain protein [Sideroxydans lithotrophicus ES-1] gi|291582628|gb|ADE10286.1| SurA domain protein [Sideroxydans lithotrophicus ES-1] Length = 433 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 135/433 (31%), Gaps = 67/433 (15%) Query: 15 KIFLVVLFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 K + + F + S V V + N M+ ++ Sbjct: 4 KKIFALFLIVFATVASAAESQKQATSLDRIDVIVNDDVITHRELENRVASVTKMLQRQ-- 61 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L++++L+ +++ L Q+ ++ GL D G++ I R + NKF Sbjct: 62 ---KTALPEKSILERQVLERMITEMLLAQYAKESGLRIDDGQLDKTILRI----AQQNKF 114 Query: 133 -SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFEN 189 F ++L R+G + E+ + + + V + N + + + Sbjct: 115 PDVAAFRAKLTRDGTDYNEFREEIRNEIIAVRLREREVDSKLVISENDIDNYLNNQAHQE 174 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + + L++ V + + + + A + + + + Sbjct: 175 GKGEELQLSHILVVVPEQATADKIQS-YRDRAEQALAKLRAGAPFAQVAAGYSDAQDALK 233 Query: 250 NDEL------------QAEYEKNKEKYFSPEIR-------------------------TV 272 EL +K K S +R Sbjct: 234 GGELGWRPADRLPPLFAEALQKMKPGDLSDVLRSPSGFHIIKLLDRRSNDAPVVITQTHA 293 Query: 273 EQLVFPN-----QKEA----DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYI 320 ++ EA E Q + KG F + A E G + LG S Sbjct: 294 RHILIKTSELVTDSEAKSRLQEIKQRIDKGASFAEQARLYSEDGSAPQGGDLGWLSPGET 353 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ +L K G + ++ FG+ + V + + S ++ ++ N +R K+ Sbjct: 354 V-PEFESAMNAL-KVGQVSGLVQTGFGWHLIQVLERRNTDV-SVEQKRQRARNAIRTVKS 410 Query: 381 SEKVKEDYKRLEE 393 E ++ ++L + Sbjct: 411 DEAFQDWLRQLRD 423 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 26/240 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + +R I + E + K+ IS +++ + E + ++ + Sbjct: 132 NEFREEIRNEIIAVRLREREVDSKLVISENDIDNYLNNQAHQEGKGEELQLSHILVVVPE 191 Query: 282 EA------------DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLA 326 +A ++A L+ G F Q+A + L LG + +P A Sbjct: 192 QATADKIQSYRDRAEQALAKLRAGAPFAQVAAGYSDAQDALKGGELGWRPADRLP-PLFA 250 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +++ + K GD + V+ G+ I + + + + V + + K SE V + Sbjct: 251 EALQKM-KPGDLSDVLRSPSGFHIIKLLDRRSNDAPV---VITQTHARHILIKTSELVTD 306 Query: 387 -----DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + +++ + G S E +R P G G+ V L Sbjct: 307 SEAKSRLQEIKQRIDKGASFAEQARLYSEDG-SAPQGGDLGWLSPGETVPEFESAMNALK 365 >gi|197124850|ref|YP_002136801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] gi|196174699|gb|ACG75672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. K] Length = 317 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 48/354 (13%), Positives = 103/354 (29%), Gaps = 92/354 (25%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 V V + + + + + +A L +++LD+LV A L Q Sbjct: 34 AVAVVNGEPIAPDAVARELRDAQAGAEGQ-------GQATGDVLRRRVLDDLVDRALLLQ 86 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + +V R F LA+E +++ E L+ Sbjct: 87 QARARSIVVGQDQVERAFLRLRA-EYPGTHFDD-----LLAQERLSQAELKARLKDQLTV 140 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + V +A + +++ ++ Sbjct: 141 ERLFEQ---------------------------------EVFPQVQVVDAEVERYYAEHG 167 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 ++ PE V Q+V +++ Sbjct: 168 AEFQEPERV----------------------------------------HVLQIVVASRE 187 Query: 282 EADEAFQSL-KKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 EA + + L + + F ++A + S LG + + D+ FSL Sbjct: 188 EATQVREKLRRNPQTFAEVARRSSIAPEGKSGGDLGLIGRGAGF-PEVFDTCFSLP-VNV 245 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + V +G+ + V KP+ + ++ + +IA ++ K + E + L Sbjct: 246 ISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGREKRAGAQAEYLEAL 299 >gi|42780220|ref|NP_977467.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987] gi|42736139|gb|AAS40075.1| protein export protein prsA [Bacillus cereus ATCC 10987] Length = 287 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 17/208 (8%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFD 238 + E + ++ + V D + F+ K E + Sbjct: 51 QVLQSMVMEKVLIKNYKVDEKEVDKKYDEMKKQVGDQFDTLLKQQGLKEETLKNGVRAEL 110 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 +K + I++ EL+ Y+ PEI+ ++ ++ A + + L +GK F + Sbjct: 111 AQDKAIEKTITDKELKENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEE 161 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ + LG F + D+ + L KK + + + FGY I V+ Sbjct: 162 LAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVT 219 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 +IK SF++ K DI ++ K + Sbjct: 220 DIKEPE-KSFEQSKADIKKELVAKKKQD 246 Score = 38.0 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 96/259 (37%), Gaps = 54/259 (20%) Query: 247 EISNDELQAEYEKNKEKYFSP--EIRTVEQLVFP----NQKEADEAFQSLKK--GKKFIQ 298 +I+ +E Y + K+K S + +E+++ ++KE D+ + +KK G +F Sbjct: 34 DITKEE---FYNEMKQKGGSQVLQSMVMEKVLIKNYKVDEKEVDKKYDEMKKQVGDQFDT 90 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L ++QG + G E D ++ +I Sbjct: 91 LLKQQGLKEETLKNG-VRAELAQDKAIEKTI----------------------------- 120 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 + +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 121 ----TDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ + ++ Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 227 Query: 479 LEEVLTDVKKDWKTVKTAE 497 E+ D+KK+ K + Sbjct: 228 FEQSKADIKKELVAKKKQD 246 >gi|99034260|ref|ZP_01314318.1| hypothetical protein Wendoof_01000886 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 212 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 16/224 (7%) Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 EI + + VD +GKD G V L+ +F ++ K + + D + Sbjct: 1 EILSEYNLPIQTIGPVDASGKDQSGNNVGD---SGDLISFIFSREKD-QKGYFKGVGD-A 55 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + V+I + P + + EE + W++ E + ++ ++ ++ D+ + Sbjct: 56 VVSVKIVDIFPPKLQSFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEE 111 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSK 580 G L+ Q++R + + + + + ++F+ PI+ N + V K +S Sbjct: 112 IQGVELVKGQQMHRNKVDQQNYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSS 171 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 G + D + L + +I+YL+S+Y V V+ ++ Sbjct: 172 NGKLNTLDTGKRVMI-----SLKEQLISYLESKYKVEVNHAILD 210 >gi|288555301|ref|YP_003427236.1| post-translocation chaperonin [Bacillus pseudofirmus OF4] gi|288546461|gb|ADC50344.1| protein secretion (post-translocation chaperonin) [Bacillus pseudofirmus OF4] Length = 304 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 16/239 (6%) Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI-VLNNRHVPAI 205 E E+ D + + + M + E ++ LN + Sbjct: 41 TEAEFYDKMKERYGQATLEEMVQRVLIADAKDELGVTEEEIEEGIENFKGQLNVETDEEL 100 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + +A +E D++ E + I+ D + ++ ++ ++ QA YE+N+E Y Sbjct: 101 LEILDAQFNMTYES-MDDFV--EDMIVPPIVLD-KLAKSEVNVTEEDKQAYYEENEELY- 155 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPD 322 E ++ +++ A+E + ++ G+ F +LA E G + LG F + Sbjct: 156 -AEQVQASHILVEDEETANEVLEKIEAGEDFGELAAEYSMDGSATRGGDLGFFGTGEMV- 213 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 ++ F L + G+ + + +GY I V++ K +++ DI + ++ Sbjct: 214 PEFEEAAFGL-EVGEVSDAVESQYGYHIIKVTDRKSG----YEDFADDIEQALIQEQSK 267 >gi|110597632|ref|ZP_01385917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium ferrooxidans DSM 13031] gi|110340752|gb|EAT59229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium ferrooxidans DSM 13031] Length = 702 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 67/641 (10%), Positives = 200/641 (31%), Gaps = 76/641 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 + +R + + + L + WG+ + + ++ + + V + + +K Sbjct: 4 MSNLRDKTHIILYTLMAAFLALIVFEWGM-NFTGFTTKANQAGKINGKTVSMAEYDEVYK 62 Query: 62 QELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + G + E + L ++ + +V L+Q E + V + Sbjct: 63 NFTANYRRANPGAELTPEA--ELSLREQAWNTVVDQTLLEQQFEKFSISLQDQEVVEALE 120 Query: 121 RSPLFHGKDNKFSH----DVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGMFVG 170 S FS + +L + + + + L ++ Sbjct: 121 SSAPPQVIRQNFSDPATGALDRKKLDSARRDPRNKELWLQIEKIVRQELKVNKLIRALQT 180 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPE 228 + +D F S +I + A ++ + ++++ +K+ +R Sbjct: 181 LDHVTGREVDDIINRQFTRFSASFIPVPVSFAGADSNFPVKEEEIKKYYDDHKELFRQAP 240 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++ ++ F + K + ++ E E + ++ +P + Sbjct: 241 SRKADFVFFPLTPSAK----DSLAVRTELESIRAEFSAPTVND----------------- 279 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSF 346 + Q + I++ ++ P + ++F+ + K G + Sbjct: 280 --------SDYVKVQSDRPTGINVTYNRSDFSP--AAGATLFNPSNLKPGTIVGPLADRG 329 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 Y + + + S + + +KV+E + + L G + ++R Sbjct: 330 EYRMIKIKQVTTSRQPVARASHILLRFNPASRAEVQKVRELSLLISQQLQAGVPFESLAR 389 Query: 407 REKI---VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 + +++ + + ++ + VF P + V G + Sbjct: 390 KYSADPGSALNGGDIGWFSRER---------MVPEFAAAVFNA-RPGAVIGPVQTQFGLH 439 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 + +++ + V +++ ++ + + ++ E V +A L + S + K F Sbjct: 440 I-IKVTGFDQSAV-----VCSEIVRNIRPSTESVESVRRQA--LAFQASAKEKGFDQTAA 491 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 + T + + + D ++ E +E + V ++T Sbjct: 492 AAKLRIDKTGEFGKHMAVAQIGYSDKVTAFAFKASEGDLSDLLETEKGFYVMRLTEKNDT 551 Query: 583 -----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 K + + L + L+ ++ + +++ Sbjct: 552 GYRLLDQDMKSRITAELVREKKGAALEKKLSAMAKGAGMSI 592 >gi|86160750|ref|YP_467535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777261|gb|ABC84098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 338 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 52/346 (15%), Positives = 97/346 (28%), Gaps = 71/346 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V LG+ + ++ D +VS Sbjct: 37 DRVAAIVNGDVVTLQELEQR-AAALGLAAADALPAGPERDRARAEALRRAFDQVVSDKLF 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +++ +E +V I K N F+ S LA EG + +Y + L Sbjct: 96 AEKAKELEIEVTEKQVDDAIEGV----KKQNGFTDAQLESALASEGYSMADYRTRIRREL 151 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 L V S L +++ Sbjct: 152 QN---------------------------------FSLLQYKVAGKIKTSEEDLRNYYQS 178 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + R+ +I E K Q Sbjct: 179 HPQEFDGEDEVRVRHIFIPFPEGGGK----------------------------QAQAQA 210 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + E Q LK G+ F +A+ + LG + I +L D+ F+L K G Sbjct: 211 RAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTI-HRTLEDAAFAL-KTG 268 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + ++ G I V + SF++ +++I ++ +A Sbjct: 269 EISGLVEAGPGVHILKVEERRRGGGKSFEQAREEIRQRLGEEQAEN 314 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 5/129 (3%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 K A+ + Q VL+ K G++F + K + + F Sbjct: 204 KQAQAQARAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAF 263 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609 + + +E G + KV + G Q +++ L + ++ +A Sbjct: 264 ALKTGEISGL-VEAGPGVHILKVEERRRGGGKSFEQAREEIRQRLGEEQAENYRQQYVAE 322 Query: 610 LKSQYSVTV 618 L+ + V Sbjct: 323 LRRDALIDV 331 >gi|313159819|gb|EFR59175.1| PPIC-type PPIASE domain protein [Alistipes sp. HGB5] Length = 677 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 85/696 (12%), Positives = 210/696 (30%), Gaps = 109/696 (15%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L +R V I + + F++ L + V + +K+ +S + Sbjct: 4 LNTLRTKF-GIVLSIVIAGALLAFILS-LKTEMGFSGNDPRVGVIDGEKINYSE----YY 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + + G ++E+ +S L L+ L + +GL ++ Sbjct: 58 NQYEQVKAQSGAQESNEQ-QSAMLANAAWQALIGKYVLTPGFDKMGLRVTEPERMSMVSG 116 Query: 122 S-------PLFHGK-DNKFSHDVFVSRLAREGINEKE------YIDHYTKMLSRTDVVGM 167 F +++ L+ N + + +G+ Sbjct: 117 QHPSQAFYNAFADPRTGEYNVAAVHQFLSEAEANAQAQQAWAQLNEQARMEREVAKFLGL 176 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRA 226 GG+ ++L + + + VP + ++ + ++ +K+ ++ Sbjct: 177 IKGGVYVNSLEVANGVNSANNTYAGKWAGKKYSAVPDSLIQLKSSDIKAYYNSHKNMFKQ 236 Query: 227 PEYKRISYILFDVHEKEKKI---------------------------------------- 246 + +SY++F+V + + Sbjct: 237 TPSRALSYVVFEVSPTDDDMLALEKSVAEVGAQFAATEELKSFVRANRNGKIADNYVSAK 296 Query: 247 EISNDELQAEYE----------------KNKEKYFSPEIRTVEQLVFP--NQKEADEAFQ 288 ++S +E +A + + + P+ + +V P + AD Sbjct: 297 QLSEEEAKALLDGATYGPVLKNNEWTMARALDTKIVPDSMGIRHIVLPYTQEALADSLLT 356 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHGS 345 LK G F Q+A + + + G +P + + + + AK GD + G Sbjct: 357 VLKGGADFAQVAAQYSVYDATAANGGEV-GVMPFSAFSGEFAAALANAKTGDIVKIASGD 415 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + + + S I + + A+ + + + + F E Sbjct: 416 A----IQLMQVYRADKPSKHVQVASITYPVEASAATRR--DIHNQAGTFSVNAKGSVEAF 469 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SYM 464 + P + + + + + + +G + D + P G Y+ Sbjct: 470 NDAASAAAVTPRIASLAQGER--TIRGLEDSRDVARWAYGAEVG---DVSEIFPVGKDYV 524 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524 + E LE+V ++ K K + +V E G + K+L Sbjct: 525 IAMLTEIDDNEFAPLEKVSAQIRAQVLRDK-------KYDYIVKEL--SGSTLDEQAKSL 575 Query: 525 GASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 G + + + G++ I + S + V P++ VF+V + + Sbjct: 576 GTEVADFDNVTFGAFYVNGPGFEPRLIGAISSTTEKGVLSAPVKGLSGVYVFEVDDIQTS 635 Query: 583 PVQEKDKFISYLTQMMNKDLLDSV-IAYLKSQYSVT 617 ++ + Q M + + + ++ + Sbjct: 636 D-KQTAEGEKVRAQAMAESMAQQFSVQAIQQMAKIQ 670 >gi|229132060|ref|ZP_04260923.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196] gi|228651460|gb|EEL07432.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196] Length = 285 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK KD Y E R+ ++ + K+ + Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + Q+ EK+ + ++ PEI+ ++ N+ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F + + + L K G + + GY I +++ K + Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LQPY 231 Query: 365 QEVKKDIANQMRITKASE 382 +VK I + + ++ Sbjct: 232 DKVKDSIRKDLEEERLAD 249 Score = 38.4 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L GTS +E++++E S DL D G Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 P E+ +++ P + V P+G Y +++ + + ++V Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPGQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++KD + + A+ Sbjct: 238 IRKDLEEERLAD 249 >gi|218848095|ref|YP_002454772.1| foldase protein PrsA [Bacillus cereus G9842] gi|218546226|gb|ACK98619.1| foldase protein PrsA [Bacillus cereus G9842] Length = 299 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 94/245 (38%), Gaps = 32/245 (13%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224 G + L ++ + D I L + S+ + ++ K + Sbjct: 40 SGTISKDELYNRMVDKIGQRTLDDMITLTV--LQKKYKVSDGEIDDEIKRLKSEFGNSFN 97 Query: 225 --------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 E + I + ++I + +L+A YE+ K PEIR V Sbjct: 98 DFLSQNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALYEQKK-----PEIR-VSH 151 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330 ++ ++ A + + G+ F LA+E + ++ +G F + + + D+ Sbjct: 152 ILVSDETLAKDIKSKIDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMV-QAFQDAAR 210 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYK 389 L K G+ + + FGY + + + K SF+++K + +++ K K+ + + Sbjct: 211 KL-KVGEVSQPVKTDFGYHVIKLLDEK--KLPSFEQMKPQLQSELISNKMDQAKINAEIQ 267 Query: 390 RLEEF 394 +L + Sbjct: 268 KLLDK 272 >gi|15966379|ref|NP_386732.1| hypothetical protein SMc02451 [Sinorhizobium meliloti 1021] gi|307313034|ref|ZP_07592661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium meliloti BL225C] gi|307321040|ref|ZP_07600446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium meliloti AK83] gi|15075650|emb|CAC47205.1| Conserved hypothetical protein, contains a peptidyl-prolyl cis-trans isomerase signature [Sinorhizobium meliloti 1021] gi|306893315|gb|EFN24095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium meliloti AK83] gi|306899353|gb|EFN29987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium meliloti BL225C] Length = 284 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 4/147 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++E++A Y+K E ++ + EA + + L GK F LA+ + Sbjct: 115 AVTSEEVKARYDKEVAAIPPQEEVKARHILVKTEDEAKDVIKELDAGKNFADLAKAKSTD 174 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + LG F+K + + F+L K + FG+ + + + +P + Sbjct: 175 PNKEEGGDLGYFTKGRMV-PEFETAAFALEKGAYTKTPVKTQFGFHVILIEDKRPQAPPT 233 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 ++V+ + + K E + + Sbjct: 234 LEQVEPQVRQLVMRDKYLELLNSAKES 260 >gi|313618921|gb|EFR90776.1| foldase protein PrsA [Listeria innocua FSL S4-378] Length = 294 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 27/253 (10%) Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 35 VTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLS 93 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + Y L E + +S +L+ Y+ + V ++ + Sbjct: 94 SNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRHILVDD 147 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKG 336 + A E LK G+KF LA+E + + G + P D + + ++L K Sbjct: 148 EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKD 207 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEE 393 D + ++ ++GY + + T + ++ I +Q+ + +K++ K Sbjct: 208 DVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANI 267 Query: 394 FLALGTSMDEISR 406 + D + Sbjct: 268 DIKDSDLKDAFAD 280 >gi|114762082|ref|ZP_01441550.1| PPIC-type PPIASE domain protein [Pelagibaca bermudensis HTCC2601] gi|114545106|gb|EAU48109.1| PPIC-type PPIASE domain protein [Roseovarius sp. HTCC2601] Length = 286 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 60/152 (39%), Gaps = 5/152 (3%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + +S++ +QA YE + + + ++ +++A + L+ G F +LA E+ Sbjct: 115 AETSVSDEAVQAAYEADYTDAETGKEFNASHILVETEEDAQALVEELEGGADFAELAREK 174 Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S LG F+ + + + + G + + FG+ + ++ + Sbjct: 175 STGPSGPNGGELGWFAAGMMVEP--FQEAVEMLEVGAVSEPVQTQFGWHVIKLNETRAKE 232 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + EV+ +I ++ + + E E Sbjct: 233 APALDEVRGEIEMSLQQQAVEKYIDETLASAE 264 >gi|311070719|ref|YP_003975642.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942] gi|310871236|gb|ADP34711.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942] Length = 306 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 17/209 (8%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWF---EKYKDNYRAPE-------YKRISYILFDVHE 241 ++ V+ S++ + + F + +++ E +I Y + Sbjct: 79 INVRVVEQLAKKNKLKVSDSDIEREFLLIKAVNNSFYEDEHTTEKEWKDQIRYNILLEEL 138 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 K I+IS E+++ Y KNKE Y + + +V +Q+EA+ + LK G F +A Sbjct: 139 LTKDIDISEKEMKSFYTKNKELYQFDDSYRIRHIVVKDQEEANRVLKDLKGGSSFEAVAA 198 Query: 302 EQGKS----LSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 E+ LG + ++ IP + ++ +L + T I S GY I + Sbjct: 199 ERSTDRYTSPYGGDLGFVTEAQDSIPAAYITEAR-TLKENEWSTEPIKVSKGYAIIQLKE 257 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKV 384 + T ++ EVK I Q+ + + +K Sbjct: 258 KLNARTFTYDEVKDQIKRQIAMDQLGDKA 286 >gi|229043011|ref|ZP_04190742.1| Foldase protein prsA 2 [Bacillus cereus AH676] gi|228726351|gb|EEL77577.1| Foldase protein prsA 2 [Bacillus cereus AH676] Length = 285 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|170692424|ref|ZP_02883587.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia graminis C4D1M] gi|170142854|gb|EDT11019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia graminis C4D1M] Length = 259 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 6/146 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK S+ E+ A Y + E + ++ N+++A + +K G F L Sbjct: 103 EDFVKKNTPSDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKGGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A++ K G +S AD+ L +KG + +H FG+ I V + Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHL-QKGQMSETPVHTQFGWHIIRVDD 220 Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381 ++ ++V+ I Q++ K Sbjct: 221 VRSITPPPLEQVRPQIVQQIQQEKLQ 246 Score = 42.3 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F D+ K + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KGGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + Q + ++ L + L+ + Sbjct: 201 QMSETPVHTQFGWHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259 Score = 41.5 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 49/152 (32%), Gaps = 15/152 (9%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404 + + T S EV ++ E + ++ ++ ++ +A G S +++ Sbjct: 102 IEDFVKKNTPSDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKGGASFEDL 161 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 +++ P G D+ + A + + V G + Sbjct: 162 AKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAATHLQKGQMSETPVHTQFG-WH 214 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 +++ + LE+V + + + K Sbjct: 215 IIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQ 246 >gi|209543390|ref|YP_002275619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter diazotrophicus PAl 5] gi|209531067|gb|ACI51004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter diazotrophicus PAl 5] Length = 308 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 6/147 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +++ +QA Y ++ ++ + EA + + LK G F LA + Sbjct: 135 TLTDAAVQAYYTQHYANKKPEAEIHARHILVATEAEAKDVIKQLKAGADFGALATKLSTD 194 Query: 307 -----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + LG F K + + +D+ F++ +H +G+ + V + + + Sbjct: 195 KASAKQNGGDLGWFKKGDML-PAFSDAAFAMKPHTFSQTPVHTQYGWHVIEVLDTRTADV 253 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDY 388 V+ +I ++ + V++ Sbjct: 254 PKLDAVRDEIRQKLIQQGVRDAVEKAV 280 Score = 37.3 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 11/87 (12%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V SV + + + + + Q ++ +L+ L+ + Sbjct: 50 VASVNGEDIHLADVRQAAANMPAQLRQLPPNMIFP----------MLLNQLIDQKAIQAA 99 Query: 103 IEDIGLE-ADHGRVWGEIARSPLFHGK 128 GL+ + A Sbjct: 100 ATHAGLDKQPDVQQQMHAAAMNALQNA 126 >gi|325288391|ref|YP_004264572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus glycolicus DSM 8271] gi|324963792|gb|ADY54571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus glycolicus DSM 8271] Length = 311 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 42/362 (11%), Positives = 104/362 (28%), Gaps = 94/362 (25%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS--VGLDKKILDNLVS 95 S V V + + F N + + G +E ++ + ++L + Sbjct: 25 SNVDYVAKVNDELIAKKDFDNKLNDIKTYVQSQ-GVDFTTEEGKAYLQNIQGQLLSMSIQ 83 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 A + Q ++ + + ++ ++ + + L ++G+ E++ + + Sbjct: 84 DAIIRQEVKKNNWDTNIPQITEKVNQIS--QKNGG--DLATY---LKQQGLTEEDLKNTF 136 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 Y A S Q Sbjct: 137 A-----------------------------------FAYYT------GKDATVSEEETRQ 155 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +FE + D Y E + Sbjct: 156 YFEDHFDQY---------------------------------------GGQMEQVKARHI 176 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332 + + EA + + ++ G F LA+E+ S + F++ + + + F + Sbjct: 177 LVGTEDEAKDIIRQIQAGADFAALAKEKSTDGSKDNGGEIDYFTRGKMVE-EFEKAAFDM 235 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 T + +GY + V + K + +++VK+ + ++K + Y +L Sbjct: 236 KIGELTTTPVKTKYGYHVIQVLDHKQTVKPDYEKVKEKVQADALENAQNQKAESYYMKLA 295 Query: 393 EF 394 + Sbjct: 296 QE 297 >gi|85705703|ref|ZP_01036800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217] gi|85669693|gb|EAQ24557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217] Length = 304 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 6/181 (3%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E +R + + DV E +++ + LQA Y+ ++ ++EA + Sbjct: 117 ENERRAVLAADVAEGVVNADMTEERLQAAYDAQYAGQEDQTEYKAAHILVETEEEAQKLV 176 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L+ G F LA+E S LG F + + + + GD + + Sbjct: 177 AELEGGANFAALAQEHSTGPSGPSGGDLGWFGDGVMVPEFF--AAVAALEVGDVSAPLQT 234 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 FG+ + ++ + + V++D+AN +R A + + E + +S + Sbjct: 235 QFGWHVIQLNETRVKERPTLDAVREDLANTLRRD-AFNAFMTEREAATEIVRSDSSAMDP 293 Query: 405 S 405 + Sbjct: 294 A 294 >gi|229195463|ref|ZP_04322231.1| Foldase protein prsA 2 [Bacillus cereus m1293] gi|228588003|gb|EEK46053.1| Foldase protein prsA 2 [Bacillus cereus m1293] Length = 285 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K+ Y + + Sbjct: 57 YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLRNNGLKDEADFKNQIKFKLAM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K I+ +++ Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NEAIKKSITEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L K G + + GY I +++ Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVTSPNGYHIIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + S+ Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERISD 249 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + + Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL-----KVGQISNPVTSPNGYHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + ++ Sbjct: 238 IRKNLEEERISD 249 >gi|313623769|gb|EFR93906.1| foldase protein PrsA [Listeria innocua FSL J1-023] Length = 294 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 27/253 (10%) Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 35 VTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLS 93 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + Y L E + +S +L+ Y+ + V ++ + Sbjct: 94 SNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRHILVDD 147 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKG 336 + A E LK G+KF LA+E + + G + P D + + ++L K Sbjct: 148 EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKD 207 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEE 393 D + ++ ++GY + + T + ++ I +Q+ + +K++ K Sbjct: 208 DISGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANI 267 Query: 394 FLALGTSMDEISR 406 + D + Sbjct: 268 DIKDSDLKDAFAD 280 >gi|163755251|ref|ZP_02162371.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1] gi|161324671|gb|EDP96000.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1] Length = 660 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 96/683 (14%), Positives = 209/683 (30%), Gaps = 121/683 (17%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 ++L V F +G + ++ + S F +K+ L +I +K + Sbjct: 7 LFLILLVSFTTFG------QSKKDKVLFTIEGEPTYVSEFSRVYKKNLDIIDEKDQKEI- 59 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 ++ D V + +++ L+ V Sbjct: 60 ----------EEYFDLFVEYKLKLKEAKNLKLDEKDSYVKEL----------------AG 93 Query: 137 FVSRLAREGIN--------EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 + +L+R + KE D K + + ++ P + L K Sbjct: 94 YRKQLSRNYMTDNNATEKLTKEAYDRLQKEVKASHILINVSLDAAPKDTLAAYNKIMDIR 153 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 ++ V DPS + K N R+ Y +K E+ Sbjct: 154 KSILEGADFGEMAVKHSDDPSAKGNQKV-AANKGNLGYFSAFRMVYPFESAAFNTQKGEV 212 Query: 249 S---NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD----------EAFQSLKKGKK 295 S + K ++ + TV ++ ++KE + + + ++ G Sbjct: 213 SMPVRTQFGYHIVKVEDIRDNAGEITVAHILLLDKKEGENKEDPEQKIKDIYSQIQDGGD 272 Query: 296 FIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+ + S L F + + D FSL K + + FG+ I Sbjct: 273 FGALAKRFSEDRSSGVNKGILPKFGRGRLRSKIFEDVAFSLDKAKEISKPFKSEFGWHIV 332 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK-------EDYKRLEEFLALGTSMDEI 404 + + P S++E K + +++ K + + ++EE ++ Sbjct: 333 QLISKHP--MKSYEEEKPLLERKIKNDKRANVINTSILKKINQLYKIEEGKTARADFYKL 390 Query: 405 SR----------------------REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + + + + + + P + + R Sbjct: 391 ADASFFSKNWKKPTDKTFLDKTLFQINDTRVTYDEFATYLLKNRSRNMVKNPDAKGFINR 450 Query: 443 -----------VFGKDDPLSKDHTVALPDGSY----MWVQIKESI---PARDRK--LEEV 482 F + D + + A G Y + + E+ A+ LE+ Sbjct: 451 NYKEFMDNKLLSFYESDLENVNEDFAAIYGEYRDGLLLFDLMENEIWNKAKTDTLGLEKF 510 Query: 483 LTDVKKDWKTVKTAEEV-----SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 D K+D+K + E V + + V E + GK+ +I K + +++N + Sbjct: 511 FNDNKEDYKWKERVEAVIASCSKEASAKKVQELLEAGKSLDEIKKA----VNKDSKVNVI 566 Query: 538 DNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596 + F G+ + + F + K + + + + KV ++ + + Sbjct: 567 FSPGVFEKGHRNLPEDFKFTKGVSKIYN-DGKTDFTIVKVDKIIPESYKKLSEIKGKVIS 625 Query: 597 MMNKDLLDSVIAYLKSQYSVTVH 619 L + LK Y V ++ Sbjct: 626 DYQVYLEKEWVTSLKKNYEVKIN 648 >gi|217958629|ref|YP_002337177.1| peptidylprolyl isomerase [Bacillus cereus AH187] gi|229137839|ref|ZP_04266438.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26] gi|217067290|gb|ACJ81540.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH187] gi|228645496|gb|EEL01729.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26] Length = 287 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + F++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKEVDKKFDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + ++ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKEIVQKKAQD 246 >gi|73541086|ref|YP_295606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] gi|72118499|gb|AAZ60762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] Length = 264 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K S+DEL+ +Y+K K ++ + + V ++ + +A +K G KF + Sbjct: 101 EDYVKTHGASDDELRKQYDKIKSQFGNGKEYHVRHILVEKEADAKAIIAKIKGGAKFEDM 160 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A+ K + G + + + + KKG T + FG+ I + + Sbjct: 161 AKASSKDPGSAANGGDLDWANSGSYVPEFSAAMTTLKKGQMTDTPVKTQFGWHIIELVDT 220 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + SF+EVK + M + E+ + K L++ Sbjct: 221 RDAKIPSFEEVKPQLMQMMMGDQNWQREQFQAMMKSLKDK 260 >gi|257094858|ref|YP_003168499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047382|gb|ACV36570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 269 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ YI V + KK IS+++ +A YE+ K + S E + V ++ + +A + Sbjct: 104 RQAIYIRAFVQDYVKKNPISDEQAKAAYERMKSQMGSTEYK-VRHILVEKEDDAKTIIVN 162 Query: 290 LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKKG KF +LA+ + G LG S D++ LAK + F Sbjct: 163 LKKGAKFDELAKQSKDPGSKEKGGDLGWSSTANYVKP-FGDAVAGLAKGKFTETPVKTDF 221 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + V + +P F ++K I +++ + + V E K+ + Sbjct: 222 GYHVILVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQKKAK 267 Score = 43.8 bits (102), Expect = 0.092, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 34/106 (32%) Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570 K+G F ++ K + + + V P++ Sbjct: 163 LKKGAKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPFGDAVAGLAKGKFTETPVKTDFG 222 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 Y V V +S+ D+ + Q + ++ L +A L+ + + Sbjct: 223 YHVILVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQKKAKI 268 Score = 40.4 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 11/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++D K + L G DE++++ K D L F Sbjct: 153 EDDAKTIIVNLKKGAKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPFGDAVAGLAKGKF 212 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE---EVSS 501 + + D Y + +++S P +++ + + + + + E+ Sbjct: 213 TETPVKT--------DFGYHVILVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQK 264 Query: 502 KAN 504 KA Sbjct: 265 KAK 267 >gi|113867525|ref|YP_726014.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] gi|113526301|emb|CAJ92646.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] Length = 264 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 7/161 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K S+ EL+ +Y+K K ++ + + ++ + +A +K G KF + Sbjct: 101 EDYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAKAIIAKIKGGAKFEDM 160 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A+ K + G ++ + ++ L KKG T + FG+ I + + Sbjct: 161 AKASSKDPGSAANGGDLDWANSSSYVPEFSAAMTGL-KKGQLTDTPVKTQFGWHIIELVD 219 Query: 356 IKPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 ++ + SF+EVK + + + E+ + K L++ Sbjct: 220 VRDAKIPSFEEVKPQLTQMLMGDQNWQREQFQAMMKSLKDK 260 Score = 38.0 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 10/134 (7%) Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 + + +E +KA ++ K G F D+ K + +D N S Sbjct: 134 RHILVEKEADAKA---IIAKIKGGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVPEFS 190 Query: 551 QVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM------NKDLL 603 +G + P++ + + ++ + + + ++ LTQM+ ++ Sbjct: 191 AAMTGLKKGQLTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQREQF 250 Query: 604 DSVIAYLKSQYSVT 617 +++ LK + + Sbjct: 251 QAMMKSLKDKAKIQ 264 >gi|196048054|ref|ZP_03115232.1| foldase protein PrsA [Bacillus cereus 03BB108] gi|196021310|gb|EDX60039.1| foldase protein PrsA [Bacillus cereus 03BB108] Length = 299 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 31/226 (13%) Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKR--IS 233 R++D + + + + SN + ++ K + E R I Sbjct: 58 ERTLDEL-ITLKVLEKKYKVSNGEIDDEIKRLKAEFGNTFTDFLAQNGVSNEEQLRDVIK 116 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 I++ +L+ Y++ K PE+R V ++ ++++A++ + G Sbjct: 117 LDKLKQKLALDHIKVKEKDLKDLYQQKK-----PELR-VSHILVADEQQANDIKGKIDAG 170 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA+E ++ +G F + D+ L K G+ + +H FGY Sbjct: 171 EDFGSLAKEFSLDVATKEKGGDIGYFKDGDMLQP-FQDAARKL-KPGEVSQPVHTDFGYH 228 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRLEEF 394 I + + K SF+++K + +++ K K+ + ++L + Sbjct: 229 IIKLIDEK--KLPSFEKMKPQLESELITKKIDQSKINAEIQKLLDK 272 >gi|53712369|ref|YP_098361.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46] gi|253563594|ref|ZP_04841051.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5] gi|52215234|dbj|BAD47827.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46] gi|251947370|gb|EES87652.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5] gi|301162075|emb|CBW21619.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 712 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 92/718 (12%), Positives = 209/718 (29%), Gaps = 118/718 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G ++ ++ + ++ + V+ +++ + +G+ + I Sbjct: 61 EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119 Query: 120 -----ARSPLFHGK-DNKFSH---DVFVSRLAREGIN--EKEYIDHYT----------KM 158 + F F F++ ++ +Y+++Y K Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179 Query: 159 LSRTDV-------------------VGMFVGGMRPSNLLL-------------------- 179 L ++ + F + S++LL Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAAVPYSSIVDSTITVKESEL 239 Query: 180 -------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---DNYRAPEY 229 + + Y E R++ YI + +T + + +Y Sbjct: 240 KDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDRAAIQQEVTDYTNQLATANGDYTTFIR 299 Query: 230 KRISYILFDVHEKEKKIEISNDELQA-----------EYE---------KNKEKYFSPEI 269 S + KK S+ + Y K K + + Sbjct: 300 STGSEYPYVDLYYTKKAFPSDVVARMDSASIGQVYGPYYNAGDNTINSFKVLSKVAAADS 359 Query: 270 RTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI- 320 Q+ + AD + ++K G F LA++ G++ + IS ++ + Sbjct: 360 VQFRQIQVYTEDAAKTKALADSIYTAIKGGADFTALAKKYGQTGESNWISSANYENAQVD 419 Query: 321 -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 ++ +I +L + + V G G +I V++ K V I + +K Sbjct: 420 GDNLKFISTINNLG-VNELSNVALGQ-GNIILQVTDKKAVKDKYKVAV---IKRAVEFSK 474 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 E + Y +F+A ++D+++ + L + G + I ++ Sbjct: 475 --ETYNKAYNEFSQFIAANPTVDKVAANAEESGYKLLERNDLYSSEHG--IGGIRGTKEA 530 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 L F + V + I R L +V ++ + K AE++ Sbjct: 531 LKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLAQVQDQLRAEIIRDKKAEKI 590 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 + + + + + S+ + S Sbjct: 591 MADMKAANATTIAQ---YTSMANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYASVSDIN 647 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 PI+ V +V + + M+ L + L + V Sbjct: 648 KLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLKGDVK 705 >gi|319654925|ref|ZP_08008999.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2] gi|317393350|gb|EFV74114.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2] Length = 288 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 50/372 (13%), Positives = 106/372 (28%), Gaps = 120/372 (32%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 + L ++ + FL++ V VG K+ +++ + + G Sbjct: 10 IAGLVLLNLITLAFLLF------KGDGSGEAVAKVGGDKITRQEWMSEMETKYG------ 57 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 K L L+ +++ E G++ V E+ +G Sbjct: 58 ---------------KSTLSELIDQKVIEEAGEKYGVKVSEKAVDLELKMVKTMYG--GN 100 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 F+ + ++E ++ L +++ Sbjct: 101 FTDE----------MSEDKWRRQIKNNLILEELL-------------------------- 124 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 A S + ++E+ ++ P+ Sbjct: 125 -----------TADVSVSEEEMKSYYEQNSSQFQVPDTY--------------------- 152 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 + Q++ ++EA++ + L +G F LA E+ S Sbjct: 153 -------------------HISQIIVKTKEEAEQTLKELDEGSSFSVLAMERSIDEFTAS 193 Query: 312 LGSFSKEYIPDVS-LADSIF---SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 LG + D + +F K G +T I GY + + SF+EV Sbjct: 194 LGGNAGYVSEDDEHIPAEVFEQVKTLKPGKWTKPIKTENGYAVVMLHEHLKGENYSFKEV 253 Query: 368 KKDIANQMRITK 379 K I Q+ + + Sbjct: 254 KSMIRRQIALEQ 265 >gi|254511296|ref|ZP_05123363.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11] gi|221535007|gb|EEE37995.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11] Length = 282 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 66/152 (43%), Gaps = 5/152 (3%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 ++++ +QA Y+ ++ + ++ +++A+ L +G F +LA+E Sbjct: 111 AAAAVTDEAIQAAYDAQFAEFEGADEFNASHILVETEEDANALKTQLDEGADFAELAKEN 170 Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S +LG F + +++ SL +KG + + FG+ + +++ + + Sbjct: 171 STGPSGPNGGALGWFGTGQMV-PEFENAVLSL-EKGQVSDPVQTQFGWHLVTLNDKRKTQ 228 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 V+ ++A ++ ++ E ++ + Sbjct: 229 APELDAVRTELAQSIQQEAIQARIDELTQQAQ 260 >gi|228950070|ref|ZP_04112255.1| hypothetical protein bthur0007_61420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809597|gb|EEM56033.1| hypothetical protein bthur0007_61420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 299 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 95/245 (38%), Gaps = 32/245 (13%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224 G + L ++ + D I L + S+ + ++ K + Sbjct: 40 SGTISKDELYNRMVDKIGQRTLDDMITLTV--LQKKYKVSDGEIDDEIKRLKSEFGNSFN 97 Query: 225 --------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 E + I + ++I + +L+A YE+ K PEIR V Sbjct: 98 DFLSQNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALYEQKK-----PEIR-VSH 151 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330 ++ ++ A + + G+ F LA+E + ++ +G F + + + D+ Sbjct: 152 ILVSDETLAKDIKSKIDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMV-QAFQDAAR 210 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYK 389 L K G+ + + FGY + + + K +SF+++K + +++ K K+ + + Sbjct: 211 KL-KVGEVSQPVKTDFGYHVIKLLDEK--KLLSFEQMKPQLESELISNKMDQNKINAEIQ 267 Query: 390 RLEEF 394 +L + Sbjct: 268 KLLDK 272 >gi|229017643|ref|ZP_04174536.1| Foldase protein prsA 1 [Bacillus cereus AH1273] gi|229023860|ref|ZP_04180344.1| Foldase protein prsA 1 [Bacillus cereus AH1272] gi|228737447|gb|EEL87958.1| Foldase protein prsA 1 [Bacillus cereus AH1272] gi|228743649|gb|EEL93756.1| Foldase protein prsA 1 [Bacillus cereus AH1273] Length = 276 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 12/221 (5%) Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEISNDEL 253 N+ + S+ + + K+ A E + + + +I + Sbjct: 53 NKALLDKYKVSDEEAKKQVDAAKEQMGDKFEVALEQVGLKNEDELKEKMKPEIALEKAIK 112 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 +K+ + PE++ V ++ ++K A E + + G+ F LA++ + G Sbjct: 113 ATVTDKDVKDNHKPEMK-VSHILVKDEKTAKEVKEKINNGEDFTTLAKQYSEDTGSKEQG 171 Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 + P ++ + L G + I S+GY I V++ K F EVK Sbjct: 172 GEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTSYGYHIIKVTDKKE--LKPFDEVKDT 228 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 I + + + + +++ L + + K Sbjct: 229 IRKDLEQQRLQDATGKWKQQVINDLLKEADIKVTDKEFKDT 269 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ + Sbjct: 119 DVKDNHKPEMKVSHILVKDEKTAKEVKEKINNGEDFTTLAKQYSEDTGSKEQGGEIAGFA 178 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 179 PGQTVKEFEEAAYKLDAGQVSEPIKTSY--------GYHIIKVTDKKE--LKPFDEVKDT 228 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q++ + KE Sbjct: 229 IRKDLEQQRLQDATGKWKQQVINDLLKE 256 >gi|120602308|ref|YP_966708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|120562537|gb|ABM28281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] Length = 343 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 81/354 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + + F + ++ + V +++ + + +LD+++S + Sbjct: 59 NRIAAVVNGEMITY--FDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSMISDILI 116 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E + + V E + + ++ + + F +LA++G++ + + + Sbjct: 117 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 172 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++G+ + + + +++E Sbjct: 173 LRHRLLGLM---------------------------------IARKVVVTRDEIAKYYEA 199 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K + + R+ + +FP Sbjct: 200 HKGQFVSGRKVRLGLV----------------------------------------IFPP 219 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337 + +AD +K G F LA + + G D+S+ S K GD Sbjct: 220 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 279 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + V + + + +V ++I N +R K E+++E +L Sbjct: 280 VSRVFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQL 333 >gi|163939063|ref|YP_001643947.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4] gi|229166104|ref|ZP_04293865.1| Foldase protein prsA 2 [Bacillus cereus AH621] gi|163861260|gb|ABY42319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus weihenstephanensis KBAB4] gi|228617326|gb|EEK74390.1| Foldase protein prsA 2 [Bacillus cereus AH621] Length = 285 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK KD Y E R+ ++ + K+ + Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + Q+ EK+ + ++ PEI+ ++ N+ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F + + + L K G + + GY I +++ K + Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LQPY 231 Query: 365 QEVKKDIANQMRITKASE 382 +VK I + + ++ Sbjct: 232 DKVKDSIRKDLEEERLAD 249 Score = 38.0 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L GTS +E++++E S DL D G Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 P E+ +++ P + V P+G Y +++ + + ++V Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPGQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++KD + + A+ Sbjct: 238 IRKDLEEERLAD 249 >gi|30249389|ref|NP_841459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] gi|30138752|emb|CAD85329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas europaea ATCC 19718] Length = 264 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + +S+ EL+ EYE K + E + ++ ++EA + +LKKG F +L Sbjct: 108 ADFMRNNPVSDSELRKEYESVKAQMGDKEYK-ARHILVETEQEAKDLVAALKKGSAFDKL 166 Query: 300 AEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A E+ S G +S + AD++ L K + + FG+ + + ++ Sbjct: 167 AGERSIDTGSKSNGGELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDV 226 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + SF+EVK+++ ++ K + V+ K + Sbjct: 227 RTAVPPSFEEVKQNMQQRVLQRKFAAVVESLRKNAK 262 Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 3/143 (2%) Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535 ++ E V + K++K E +A LV K+G F + + + Sbjct: 123 KEYESVKAQMGDKEYKARHILVETEQEAKDLVAAL-KKGSAFDKLAGERSIDTGSKSNGG 181 Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + + + + P+++ + V ++ + + ++ + Sbjct: 182 ELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDVRTAVPPSFEEVKQNM 241 Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617 Q + + +V+ L+ V Sbjct: 242 QQRVLQRKFAAVVESLRKNAKVE 264 Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 11/83 (13%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 + TV V +P S K + S + + +NL+ Sbjct: 22 LNAQSGGTVAKVNGVAIPQSRLDLVVKAATAQ-----------GQPDSAEVRNALRENLI 70 Query: 95 SGATLDQFIEDIGLEADHGRVWG 117 + L Q GL+ V Sbjct: 71 TEEILAQEAIKKGLDRSPEVVTQ 93 >gi|324325280|gb|ADY20540.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 285 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + S+ + + +K K+ Y + + L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVTSPNGYHIIKLTDKKE--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + S+ Sbjct: 232 DEVKDSIRKNLEEERISD 249 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 59/148 (39%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + + Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL-----KVGQISNPVTSPNGYHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + + ++ + K +L+ + K+ Sbjct: 238 IRKNLEEERISDPIFGK--KLLQDELKK 263 >gi|52144275|ref|YP_082553.1| peptidylprolyl isomerase [Bacillus cereus E33L] gi|51977744|gb|AAU19294.1| protein export protein [Bacillus cereus E33L] Length = 287 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 28/193 (14%) Query: 207 DPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFD-------VHEKEKKIEISNDELQ 254 + + + +++ K Y + + I EK + I++ EL+ Sbjct: 67 KVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEGTLKTGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + D+ + L KK + + + FGY I V+ IK SF++ K D Sbjct: 178 DLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPVKSQFGYHIIKVTEIKEPE-KSFEQSKVD 234 Query: 371 IANQMRITKASEK 383 I ++ KA + Sbjct: 235 IKKEIVQKKAQDA 247 Score = 36.9 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 102/275 (37%), Gaps = 56/275 (20%) Query: 247 EISNDELQAEYEKNKEKYFSP--EIRTVEQLVFPN----QKEADEAFQSLKK--GKKFIQ 298 +I+ DE YE+ K + +E+++ N KE D+ + +KK G +F Sbjct: 34 DITKDE---FYEQMKTQAGKQVLNNMVMEKVLIKNYKVEDKEVDKKYDEMKKQYGDQFDT 90 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L ++QG I G+ ++ +I Sbjct: 91 LLKQQG-----IKEGTLKTGVRAQLAQEKAI----------------------------- 116 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 T++ +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 117 EKTITDKELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 176 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V L + + S+ Y +++ E ++ Sbjct: 177 GDLGFFGPGKMVKEFEDAAYKLKKDEVSEPVKSQF--------GYHIIKVTEIKEP-EKS 227 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 E+ D+KK+ K + N+L+++ K+ Sbjct: 228 FEQSKVDIKKEIVQKKAQDA--EFMNELMMKEIKK 260 >gi|154247041|ref|YP_001417999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter autotrophicus Py2] gi|154161126|gb|ABS68342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter autotrophicus Py2] Length = 338 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y R ++ + +E K +S + Y++ + + ++ ++ +A E + Sbjct: 146 YARTKALMETLMTQEAKKAVSEEAKHKTYDEFVKSAPAEAEVRARHILVDDEAKAKEIAK 205 Query: 289 SLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G+ F +LA++ K LG F+K+ + A++ F L K G + + F Sbjct: 206 KAKAGEDFAKLAKDYSKDSAEDGGDLGYFTKDQMV-PEFAEAAFKLDK-GQVSDPVKSQF 263 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + V + + ++ +V + + ++ V + + Sbjct: 264 GWHVIKVEDKRQKPVPTYDQVSDQVEQYLVRKAQADLVTKLRTDAK 309 >gi|229154723|ref|ZP_04282838.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342] gi|228628671|gb|EEK85383.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342] Length = 287 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + F++ K Y E + EK + I++ EL+ Sbjct: 67 KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKNGVRAQLAQEKAIEKTITDKELK 126 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 127 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 177 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + ++ + L KK + + + FGY I V++IK SF++ K D Sbjct: 178 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 234 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 235 IKKEIVQKKAQD 246 >gi|89052781|ref|YP_508232.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Jannaschia sp. CCS1] gi|88862330|gb|ABD53207.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Jannaschia sp. CCS1] Length = 301 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 63/150 (42%), Gaps = 5/150 (3%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG- 304 E+ +ELQA Y++ + ++ +++A +L +G F +LA E Sbjct: 133 AELGEEELQAAYDEAYGEVEPTVEYNAAHILVEGEEDAQNLLTALGEGADFAELAAENSI 192 Query: 305 --KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + +LG F++ + ++ L + G+ + + FG+ + ++ + Sbjct: 193 GPSGPNGGALGWFTEGMMV-PEFEAAVMEL-EPGEVSSPVQTQFGWHVVLLNETREQAAP 250 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +V+ ++ +R + +++E E Sbjct: 251 TLDDVRPELEETIRRGRVDARLEELMAEAE 280 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 11/152 (7%) Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVK--EDYKRLEEFLALGTSMDEISRREKIVSID 414 + ++ E ++ + A V+ ED + L L G E++ I Sbjct: 137 EEELQAAYDEAYGEVEPTVEYNAAHILVEGEEDAQNLLTALGEGADFAELAAENSI-GPS 195 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 P G +G V P E + + +P V G ++ + + E+ Sbjct: 196 GPNGGALGWFTEGMMV---PEFEAAVMEL----EPGEVSSPVQTQFGWHVVL-LNETREQ 247 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 L++V ++++ + + + + Sbjct: 248 AAPTLDDVRPELEETIRRGRVDARLEELMAEA 279 >gi|324325142|gb|ADY20402.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 288 Score = 100 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + F++ K Y E + EK + I++ EL+ Sbjct: 68 KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKNGVRAQLAQEKAIEKTITDKELK 127 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 128 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 178 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + ++ + L KK + + + FGY I V++IK SF++ K D Sbjct: 179 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 235 Query: 371 IANQMRITKASE 382 I ++ KA + Sbjct: 236 IKKEIVQKKAQD 247 >gi|213584574|ref|ZP_03366400.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 168 Score = 100 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 10/174 (5%) Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + + V++ E P + L EV V K K ++ A +L++E K GK Sbjct: 1 ITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGK 59 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVV 573 + K G S ++R + + S P + + + N + + V+ Sbjct: 60 GAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVL 114 Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625 K G P +K + +TQ + + +++++ L+ + + + D L Q+ Sbjct: 115 LAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 168 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + VS KP EVK+ + ++ KA ++ K D ++L L G E + Sbjct: 10 VVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVELKAGKG-AEAMKAAG 68 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAI 433 + + + +D + A+ Sbjct: 69 LSFGEPKTLSRTSQDPVSQAAFAL 92 >gi|53804280|ref|YP_114087.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus capsulatus str. Bath] gi|53758041|gb|AAU92332.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus capsulatus str. Bath] Length = 325 Score = 100 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 10/233 (4%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP--SNAVLTQWFEKYKDNY 224 V G + + K + RS + + +AV Q + + Sbjct: 47 AVVNGTAITKAEVGAIKSELAQRRSGEVSEEKIVDELVKRELLRQDAVAKQLTKNPEYQA 106 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 R +R+ + K + IS++ELQ EY+ E R ++ + A Sbjct: 107 RIDNAERVILSQIAAEDFMKNLTISDEELQKEYDSRIGAMQRAEYR-ARHILVDKEDVAK 165 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + L KG KF LA++ K LG FS + + ++++ L K G+ T Sbjct: 166 DIIAKLGKGAKFEDLAKKFSKDPGSNNEGGELGWFSPQQMVQP-FSEAVEKL-KNGEITQ 223 Query: 341 -VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FG+ + + S +F VK+ I + ++ K + + + + + Sbjct: 224 VPVQTQFGWHVIQREESRESAPPAFDAVKEQIKSMLQTQKLHQYIDDLMAKAK 276 Score = 39.6 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 10/136 (7%) Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546 + +++ + A ++ + K G F D+ K N E +F Sbjct: 148 RAEYRARHILVDKEDVAKDIIAKLGK-GAKFEDLAK----KFSKDPGSNNEGGELGWFSP 202 Query: 547 DGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 + Q FS V + P++ + V + S+ D + M+ Sbjct: 203 QQMVQPFSEAVEKLKNGEITQVPVQTQFGWHVIQREESRESAPPAFDAVKEQIKSMLQTQ 262 Query: 602 LLDSVIAYLKSQYSVT 617 L I L ++ V Sbjct: 263 KLHQYIDDLMAKAKVE 278 >gi|296135908|ref|YP_003643150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] gi|295796030|gb|ADG30820.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia K12] Length = 262 Score = 100 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 76/157 (48%), Gaps = 6/157 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K I+ +++AEY+K + + S E + + ++ P++KEA + LKKG KF +L Sbjct: 105 NAYLQKHPITEAQIKAEYDKFVKSFGSTEYK-AQHILVPSEKEAQDIIAQLKKGAKFSEL 163 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A++ K + G P+ A ++ +L K G +T + FG+ + + Sbjct: 164 AKKYSKDTGSAANGGDLGWSTPNNYVPPFAKALEAL-KPGQYTQTPVQSQFGWHVIKLDA 222 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +P+ + ++K I +++ + ++ E + + Sbjct: 223 TRPAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAK 259 Score = 41.1 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 16/116 (13%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + +V + +P S + Q A + L + + + L+S + Sbjct: 23 AQNIATVNGKPIPQSLADSVANSMAKQQGQ----------AVTPQLKEMVKNELISREVM 72 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 Q + +GL+ V EI + N +F + L + I E + Y Sbjct: 73 VQEADKLGLDK-ETAVQDEIRI-----ARQNILIRALFNAYLQKHPITEAQIKAEY 122 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 13/137 (9%), Positives = 45/137 (32%), Gaps = 2/137 (1%) Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NE 540 V + ++K +A ++ + K+G F ++ K + + + Sbjct: 126 VKSFGSTEYKAQHILVPSEKEAQDIIAQL-KKGAKFSELAKKYSKDTGSAANGGDLGWST 184 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 + + + P+++ + V K+ ++ D+ + + + Sbjct: 185 PNNYVPPFAKALEALKPGQYTQTPVQSQFGWHVIKLDATRPAKAPTLDQLKPQIQAELQR 244 Query: 601 DLLDSVIAYLKSQYSVT 617 + L+++ +T Sbjct: 245 QEVTKYQDELRAKAKIT 261 >gi|122070617|sp|Q5P7I9|SURA_AZOSE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 439 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 121/402 (30%), Gaps = 63/402 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V + + +Q + ++++ G L++++L+ LV Q Sbjct: 39 AAVVNNEVITARELRERVEQAIHQLNRQ-GTPQPPADV----LERQLLERLVLERAQLQL 93 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + L+ D + IAR + N+ + + L ++G++ + D+ + T Sbjct: 94 ARETSLQVDEATLERAIARI----AESNRLTIAQLQAALEKDGVSWSRFRDNIRTEILLT 149 Query: 163 DVVG------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--------- 207 + + V N L + A E + +I++ Sbjct: 150 RLREREVDNRIVVTDAEVDNFLANNADALSGEEFELAHILIRVPEAATQQQMAGLVARAE 209 Query: 208 ---------PSNAVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEKEKKIE 247 A + + D R P + + Sbjct: 210 TAKQRLNSGDDFARVAASYSDAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLR 269 Query: 248 ISN-DELQAEYEKNKEKYFSP---EIRTVEQLVFPN-----QKEADE----AFQSLKKGK 294 S + ++ P E ++ EA+ + + G Sbjct: 270 SSAGLHIVKLLDRRGGAAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGA 329 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+ LS LG S ++ +L K G+ + + FG+ + Sbjct: 330 SFAELAKAHSADLSSAKGGDLGWLSPGDTV-PEFERTMNAL-KPGEVSAPVRSPFGWHLI 387 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 V + VS + + N +R KA E ++ ++L + Sbjct: 388 QVEARR-LQDVSDERKRNAARNALRERKADEAFEDWLRQLRD 428 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 93/292 (31%), Gaps = 42/292 (14%) Query: 141 LAREGINEKEYIDHYTKMLS------RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 L R+G + D + L R + ++ L++A E+ + Sbjct: 63 LNRQG-TPQPPADVLERQLLERLVLERAQLQLARETSLQVDEATLERAIARIAESNRLTI 121 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 L S +R I E + +I +++ E+ Sbjct: 122 AQLQAALEKDGVSWS-------------RFRDNIRTEILLTRLREREVDNRIVVTDAEVD 168 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEE 302 N + E + ++ + A + A Q L G F ++A Sbjct: 169 NFLANNADALSGEEF-ELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAAS 227 Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-- 357 + +LG S++ +P A+++ L+ G +PV+ S G I + + + Sbjct: 228 YSDAPDAMNGGALGWRSRDRLP-PLFAEAVRELS-PGSVSPVLRSSAGLHIVKLLDRRGG 285 Query: 358 -PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + ++ + I + + + L E + G S E+++ Sbjct: 286 AAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFAELAKA 337 >gi|254504552|ref|ZP_05116703.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11] gi|222440623|gb|EEE47302.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11] Length = 282 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 9/197 (4%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 ++ D + E+ + + ++ I++ +++ Y+K ++ PE ++ Sbjct: 87 DQDPDFKKQLEFLELRALRNAYLGQKINASITDADVKTAYDKEFAEFEGPEEINARHILV 146 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334 ++ A+ L G F +LA+E+ S LG F+K + ++ F+L Sbjct: 147 EDKAAAEALIAELDGGADFAELAKEKSTGPSGPNGGDLGYFAKGQMV-PPFEEAAFALEP 205 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR---- 390 + FG+ I V + + + V+ ++ Q+ + ++ E Sbjct: 206 GSFTKEPVETQFGWHIIKVEDKRRQEKPALDTVEANLRQQLARERYEARMVELKDEYAVE 265 Query: 391 -LEEFLALGTSMDEISR 406 L+E LA + + Sbjct: 266 ILDEQLANADAEKPAAE 282 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 38/114 (33%) Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572 G +F ++ K N + F+ P+E + Sbjct: 161 GGADFAELAKEKSTGPSGPNGGDLGYFAKGQMVPPFEEAAFALEPGSFTKEPVETQFGWH 220 Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 + KV + + D + L Q + ++ ++ + LK +Y+V + D + Sbjct: 221 IIKVEDKRRQEKPALDTVEANLRQQLARERYEARMVELKDEYAVEILDEQLANA 274 >gi|116873652|ref|YP_850433.1| prsA protein, export protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742530|emb|CAK21654.1| prsA protein, export protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 291 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 26/207 (12%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F++YK Y ++ Y L E + Sbjct: 62 LGDKYKVSDEDVDKKFKEYKAQYGDQFAAVLAQSGLTEKTFKSQLKYNLLVQKATEANTD 121 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++K+A E Q LK G KF LA+E Sbjct: 122 TSDKALKEYYKT-----WQPDI-TVSHILVADEKKAKEVEQKLKDGAKFSDLAKEYSTDT 175 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G + P D + + ++L KGD + + +GY I + P+ +F Sbjct: 176 ATKENGGQLAAFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDE--PATKTTF 233 Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKR 390 + KK + + +E +++ K+ Sbjct: 234 DKDKKAVKASYLTSQLTNENMQKTLKK 260 >gi|229068819|ref|ZP_04202115.1| Foldase protein prsA 2 [Bacillus cereus F65185] gi|229078459|ref|ZP_04211020.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2] gi|229189353|ref|ZP_04316373.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876] gi|228594147|gb|EEK51946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876] gi|228704881|gb|EEL57306.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2] gi|228714327|gb|EEL66206.1| Foldase protein prsA 2 [Bacillus cereus F65185] Length = 285 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK K Y + E + ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|206976548|ref|ZP_03237454.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus H3081.97] gi|206745231|gb|EDZ56632.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus H3081.97] Length = 288 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 28/192 (14%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + F++ K Y E + EK + I++ EL+ Sbjct: 68 KVEDKDVDKKFDEMKKQYGDQFDTLLKQQGIKEETIKNGVRAQLAQEKAIEKTITDKELK 127 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA++ + Sbjct: 128 DNYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGG 178 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + ++ + L KK + + + FGY I V++IK SF++ K D Sbjct: 179 DLGFFGPGKMVK-EFEEAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFEQSKAD 235 Query: 371 IANQMRITKASE 382 I ++ K+ + Sbjct: 236 IKKEIVQKKSQD 247 >gi|260683172|ref|YP_003214457.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196] gi|260686770|ref|YP_003217903.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291] gi|260209335|emb|CBA62746.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196] gi|260212786|emb|CBE03939.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291] Length = 310 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 119/370 (32%), Gaps = 78/370 (21%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVG---LDK 87 +L V + ++ V ++ + + + G ++ G L+ Sbjct: 6 SLMMVGCNKSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKGRNKLEN 65 Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI 146 I+ +V L Q +D GL V + ++K + + + ++ + G+ Sbjct: 66 VIISFMVDNELLYQEAKDKGLTPSKSEV------DSKYQELEDKMNLNTSYKEKMDKAGV 119 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 +++ ++ L+ N + Sbjct: 120 DKEYLKQEISRDLAIDK----------------------------------NKKAFEDRI 145 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + S+ + ++ +K ++ E ++ + + +K++ E + N Sbjct: 146 NISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADN------ 199 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322 +K G+ F LA++ + LG F+K+ + Sbjct: 200 -------------------ILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDD-KN 239 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +F L KK + + V S+GY I V++ + SF E + I + K E Sbjct: 240 AEFTKEVFKL-KKNEVSNVFETSYGYHIVKVTDKRE-RQKSFNECQSLIRESILNEKYIE 297 Query: 383 KVKEDYKRLE 392 +K+ + + Sbjct: 298 HIKKLNEDAK 307 >gi|289627686|ref|ZP_06460640.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649005|ref|ZP_06480348.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. aesculi str. 2250] gi|330868493|gb|EGH03202.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 440 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVDDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|154252183|ref|YP_001413007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum lavamentivorans DS-1] gi|154156133|gb|ABS63350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum lavamentivorans DS-1] Length = 287 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 73/164 (44%), Gaps = 5/164 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + +++++ +A YEKN + + ++ ++ +A E ++ GK F + A+E Sbjct: 116 QDKVTDEAAKAYYEKNIAGAPAEQEAHARHILVQDKAKAAEIAAEIEGGKGFEEAAKEYS 175 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + LG F ++ + +++FS+ K G+ + + FG+ + + ++ Sbjct: 176 QDPGSADGGDLGWFKRDEMV-PEFGEAVFSM-KPGEVSAPVQTQFGWHLIQLVELRDVPK 233 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +++E ++I Q+ + + +++ + + S S Sbjct: 234 PTYEEAHEEIIRQLARQEGQKLMEKLRTDAKIEIIGAESAAAPS 277 >gi|56694986|ref|YP_165332.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56676723|gb|AAV93389.1| PPIC-type PPIASE domain protein [Ruegeria pomeroyi DSS-3] Length = 276 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 5/150 (3%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + + +QA Y+ F E ++ P++ EA + L G F A+E+ Sbjct: 107 VATTETAIQAAYDAQYADGFGGEEYNASHILVPSEDEAKAVKELLDNGADFAATAKEKST 166 Query: 306 SLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S +LG F + ++ +L G + + FG+ + +++ + S Sbjct: 167 GPSGPNGGALGWFGAGAMV-PEFEQAVVAL-NAGQVSDPVQTQFGWHVIILNDKRKSEAP 224 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + EV+ ++A +++ ++ E K E Sbjct: 225 ALDEVRDELAGRIQQDAIEARLAELTKDSE 254 >gi|206889870|ref|YP_002249039.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741808|gb|ACI20865.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 292 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 225 RAPEYKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 R E+K+I+ I + ++ K +++ + + YEKNK+ + P + Q+V N+ EA Sbjct: 91 RMEEFKKITLINMLLEQEIKTLQQVTEQDAKEYYEKNKDMFIKPVEVRLSQIVVKNEDEA 150 Query: 284 DEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + ++ + KG++F ++A+E + S +G F K + + + + FSL K G + Sbjct: 151 KKVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQL-NPQIENVAFSLRK-GQVS 208 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + I ++++K + F+++K + Q++ K + L++ Sbjct: 209 MPLTFKGELYIFKITDVK-GNPIDFEQIKGQLIEQLKAKKQQDWFNTYIDDLKKK 262 Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562 + V E +G+ F I K L + + + + FS V Sbjct: 150 AKKVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQLNPQIENVAFSLRKGQV-S 208 Query: 563 FPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 P+ +FK+T+ K P Q K + I L +D ++ I LK ++ V ++ Sbjct: 209 MPLTFKGELYIFKITDVKGNPIDFEQIKGQLIEQLKAKKQQDWFNTYIDDLKKKHKVEIN 268 Query: 620 DNLIQRYLDG 629 + +Q L+ Sbjct: 269 EKALQEILNQ 278 >gi|229095750|ref|ZP_04226729.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29] gi|229101848|ref|ZP_04232562.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28] gi|229114700|ref|ZP_04244114.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3] gi|228668765|gb|EEL24193.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3] gi|228681431|gb|EEL35594.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28] gi|228687583|gb|EEL41482.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29] Length = 285 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 81/198 (40%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-----EYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + +K K+ + E R+ ++ + K+ + Sbjct: 57 YEMMAYDVITKKYKVSDDDVDNEVQKVKNQFGDQFKGFLENNRLKDEADFKNQMKFKLAL 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 ++ EK+ + ++ PEI+ ++ ++ A E + L G F +LA+++ + L Sbjct: 117 HEAVKKSVTEKDVKDHYKPEIK-ASHILVSDENAAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G+ + + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGTMA-PEFETAAYKL-KVGEISNPVKSTNGYHIIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + ++ Sbjct: 232 DEVKDSIRKNLEEERIAD 249 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 45/132 (34%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENAAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G L + S Y +++ + + +EV Sbjct: 188 SGTMAPEFETAAYKLKVGEISNPVKST--------NGYHIIKLTDKKD--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEEERIAD 249 >gi|315303180|ref|ZP_07873840.1| foldase protein PrsA [Listeria ivanovii FSL F6-596] gi|313628450|gb|EFR96923.1| foldase protein PrsA [Listeria ivanovii FSL F6-596] Length = 291 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 27/232 (11%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------------RA 226 +A + + N V + + + + ++KY++ Y + Sbjct: 42 EAMKTTYGNEVVQQLTFK-XXLEDKYTVTKKEVNAEYKKYEEQYGDSFESTLASSNLTKT 100 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + I Y L E +++S +L+ Y+ + P+I TV ++ ++ A E Sbjct: 101 SFKENIEYNLLVQKATEANMDVSESKLKKYYKT-----WQPDI-TVRHILVDDEDTAKEI 154 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIH 343 LK G+KF LA+E + + G + D + + ++L D + ++ Sbjct: 155 QTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEKAAYALKNPDDISGIVK 214 Query: 344 GSFGYVIAHVSNIKPSFT--VSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392 S+GY + + T VK I +Q+ + +K++ K Sbjct: 215 SSYGYHLIQLVKKTDKTTYAKDKAAVKASYIESQLTSENMTAALKKELKAAN 266 >gi|229056898|ref|ZP_04196294.1| Foldase protein prsA 2 [Bacillus cereus AH603] gi|228720426|gb|EEL71999.1| Foldase protein prsA 2 [Bacillus cereus AH603] Length = 285 Score = 100 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK KD Y E R+ ++ + K+ + Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + Q+ EK+ + ++ PEI+ ++ N+ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F + + + L K G + + GY I +++ K + Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LQPY 231 Query: 365 QEVKKDIANQMRITKASE 382 +VK I + + ++ Sbjct: 232 DKVKDSIRKDLEEERLAD 249 Score = 38.0 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L GTS +E++++E S DL D G Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 P E+ +++ P + V P+G Y +++ + + ++V Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPGQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++KD + + A+ Sbjct: 238 IRKDLEEERLAD 249 >gi|315927333|gb|EFV06677.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 263 Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 94 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 153 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T + +FGY Sbjct: 154 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 212 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 213 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 254 >gi|229120788|ref|ZP_04250031.1| Foldase protein prsA 2 [Bacillus cereus 95/8201] gi|228662793|gb|EEL18390.1| Foldase protein prsA 2 [Bacillus cereus 95/8201] Length = 285 Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K K ++ +++ Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L K G + + GY I +++ Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KIGQISNPVKSPNGYHIIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KE--LKPYDEVKDSIRKNLEEERITD 249 Score = 37.3 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 50/132 (37%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + + Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL-----KIGQISNPVKSPNGYHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + + Sbjct: 238 IRKNLEEERITD 249 >gi|187776514|ref|ZP_02992987.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC 15579] gi|187775173|gb|EDU38975.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC 15579] Length = 247 Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316 NKE++ + E+ T ++ ++ EA+ + +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEDEANSIYGKIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 K + ++F A+ T + FGY + V NI+ S F EVK I N++ Sbjct: 166 KGQMV-PEFEKAVFE-AEVDKVTEAVKTQFGYHLIIVDNIRESMIKPFDEVKAMINNKLL 223 Query: 377 ITKASEKVKEDYKRLEEF 394 K +++ E + L + Sbjct: 224 QEKQNQQYNEFTQNLRDK 241 >gi|91205713|ref|YP_538068.1| protein export protein prsA precursor [Rickettsia bellii RML369-C] gi|157826827|ref|YP_001495891.1| protein export protein prsA precursor [Rickettsia bellii OSU 85-389] gi|122425481|sp|Q1RI35|PLP_RICBR RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl cis-trans isomerase plp; AltName: Full=Rotamase plp; Flags: Precursor gi|91069257|gb|ABE04979.1| Protein export protein prsA precursor [Rickettsia bellii RML369-C] gi|157802131|gb|ABV78854.1| Protein export protein prsA precursor [Rickettsia bellii OSU 85-389] Length = 284 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K +++ EY K E V ++ ++KEA++ L KG F +LA E Sbjct: 117 KSNLTDKMFDDEYNKYVTSLKGKEQIKVAHILVKSEKEANDLKNKLNKGADFAKLAGESS 176 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + G + + + F+L K + + + +G+ I V KP Sbjct: 177 LDKASATNGGVIGYILLNQPGQLVPEFENKAFAL-KVNEVSTPVKTDYGWHIIKVLEKKP 235 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 236 VPIPTKEEAKMTIDNVLAAEILKKYISDLEAKAD 269 >gi|297520133|ref|ZP_06938519.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli OP50] Length = 189 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 74/189 (39%), Gaps = 11/189 (5%) Query: 442 RVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 + G++ + + DG +V +I E P + L +V VK + ++ Sbjct: 7 GLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNNAEQQAK 66 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 A +L+++ K GK + + G ++R + + P + Sbjct: 67 VDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD----PISQAAFALPLPAKDK 120 Query: 561 KCFPIENGL--SYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 + + + + V+ + K G P +K + +TQ + + +++++ L+ + + Sbjct: 121 PSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKI 180 Query: 617 TVHDNLIQR 625 + D L Q+ Sbjct: 181 KIGDALEQQ 189 >gi|153008357|ref|YP_001369572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum anthropi ATCC 49188] gi|151560245|gb|ABS13743.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum anthropi ATCC 49188] Length = 326 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 87/245 (35%), Gaps = 14/245 (5%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE-KYKDNYRAPEYKRISYILFDV 239 Q R E R + + + L Q E K + + Y V Sbjct: 82 QFSRLPAEQRRLAALAALIDIKAMAGEAEKEKLDQSQEFKNRMEFLRERALHNEYFKDAV 141 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +IS+D+++A Y+K ++ ++EA+ + L+ G KF L Sbjct: 142 VD-----KISDDDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDL 196 Query: 300 AEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+E G + + LG F++ + + F+L + FG+ + + + Sbjct: 197 AKESSTDGTAANGGDLGYFAEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGFHVIQLEDR 255 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK----RLEEFLALGTSMDEISRREKIVS 412 + +F +VK I + + + E VK+ ++ D + +E Sbjct: 256 RTKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAMKDAAAAQEGADK 315 Query: 413 IDLPL 417 D P Sbjct: 316 DDAPE 320 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 53/159 (33%), Gaps = 3/159 (1%) Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 + D+++ + V+ + + + ++A +++ + G F D+ K Sbjct: 148 DDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKFEDLAKESSTDG 204 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 N + + F+ P++ + V ++ + + D Sbjct: 205 TAANGGDLGYFAEGQMVPEFEKAAFALKPGEYTKEPVQTQFGFHVIQLEDRRTKQPPAFD 264 Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + ++ ++ + L+ + D +++ + Sbjct: 265 QVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAM 303 >gi|57238208|ref|YP_178711.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221] gi|86149798|ref|ZP_01068027.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151529|ref|ZP_01069743.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 260.94] gi|88596967|ref|ZP_01100203.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 84-25] gi|205355446|ref|ZP_03222217.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8421] gi|218562247|ref|YP_002344026.1| major antigenic peptide PEB-cell binding factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124114|ref|YP_004066118.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|123141587|sp|Q0PAS1|CBF2_CAMJE RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen peb4A; Flags: Precursor gi|671840|emb|CAA59175.1| cell binding factor 2 [Campylobacter jejuni subsp. jejuni 81-176] gi|57167012|gb|AAW35791.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221] gi|85839616|gb|EAQ56876.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841158|gb|EAQ58406.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 260.94] gi|88190656|gb|EAQ94629.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359953|emb|CAL34742.1| major antigenic peptide PEB-cell binding factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205346680|gb|EDZ33312.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925857|gb|ADC28209.1| major antigenic peptide PEB-cell binding facto [Campylobacter jejuni subsp. jejuni IA3902] gi|315017836|gb|ADT65929.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315058010|gb|ADT72339.1| Cell binding factor 2 precursor [Campylobacter jejuni subsp. jejuni S3] gi|315928817|gb|EFV08084.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni 305] Length = 273 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 163 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T + +FGY Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264 >gi|332293063|ref|YP_004431672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter diaphorus 4H-3-7-5] gi|332171149|gb|AEE20404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter diaphorus 4H-3-7-5] Length = 647 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 82/679 (12%), Positives = 197/679 (29%), Gaps = 107/679 (15%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 +FL+++F+ F+ + ++++ + + F +++ +I + Sbjct: 4 LFLLLIFLC-------GFSFAHAQKDILLTINNEVIDSEEFTRVYEKNSELIKE------ 50 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L + Q +GL + + + + Sbjct: 51 -----DESNAPEDYLKLFIDYKLKVQEAYRLGLN-----------NKKSYQDELSAYRAQ 94 Query: 136 VFVSRLAREGINEK---EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + + L + E+ E D L+ ++ PS+ L+ R + Sbjct: 95 LAKNYLNDVKVTEELVKEAYDRTVNELNARHILVRVSPDASPSDTLVAYRNITQARERII 154 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250 + DPS +K N + ++ Y + E+S Sbjct: 155 NGENFEKVARAISEDPSA-------KKNGGNLGWFKAFKMVYPFENAAYNTAINEVSKPF 207 Query: 251 -DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLA 300 + S V ++ ++ +E + L +G F +A Sbjct: 208 RTSFGYHIVQPIAARKSKGKVQVAHIMVALNQNDSTIIPEERINEVSKLLSQGASFETVA 267 Query: 301 EEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + G F + + + + FSL G + FG+ I + + Sbjct: 268 LNYSDDRASYKKGGKLEEFEQGQLSSAAFEKTAFSLENIGAISQPFKTEFGWHIIKLLSK 327 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS----------- 405 P ++ + + + N++ ++ + + + Sbjct: 328 TP--VPTYLDARVALTNKVTRDARAQVISNKLDSKLRNRYNVALNEGLQSYLESLFPEKY 385 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVA-AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 KIV + P + + K+ L + ++ S+ V S++ Sbjct: 386 SETKIVLNNEPALSNVAFTLGKKKATYTYKMVADYLLAKYPRNKFRSRSQFVEEGIQSFV 445 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKT-----VKTAEEVSSKANQLVLEYSK------- 512 V +K + ++ D+ K++K + KA Q + + Sbjct: 446 SVVLKNYHLEHLEEEDQDFADILKEYKEGLLLFDLLETNIWKKAQQDSIGLQEFFLRNKE 505 Query: 513 ---------------EGKNFRD-----IGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 + K+ I K L + ++ D Q Sbjct: 506 DYRSVKTYEATVCTTKSKSLAKNYRKIISKGLSPDEAVLSLKSKSDTPVLLSNRVLTQQE 565 Query: 553 FSGPVEMVKCFP----IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 F P IE+G +++V+ VT Q + K+L + + Sbjct: 566 F--PKGQYLSIGISDLIEDGDNFIVYDVTAITEARDQLLKDVRGVVISDYQKELENKFVK 623 Query: 609 YLKSQYSVTVHDNLIQRYL 627 L+ + ++T++ ++ R + Sbjct: 624 NLRDKSTITINKEILNRLI 642 >gi|172056725|ref|YP_001813185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sibiricum 255-15] gi|259534741|sp|B1YK87|PRSA_EXIS2 RecName: Full=Foldase protein prsA; Flags: Precursor gi|171989246|gb|ACB60168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sibiricum 255-15] Length = 304 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 80/234 (34%), Gaps = 28/234 (11%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 GG + D+A + + + ++ + +K KD + E Sbjct: 32 GGEVNKADVQDEAYQKAGAQIAFQQTMNKLLEKEYGKKVTDKEVEAEVKKTKDQFPDKEQ 91 Query: 230 -----------------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 K + + K K ++++ E++ + + K Sbjct: 92 FNTTLQTAGIKNEKEFEKVLRTQMLLKEAKSAKSKVTDKEIEDRFNQEKV------EVKA 145 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADS 328 ++ + EA + L +G F ++A+ + G + LG F+K + + + Sbjct: 146 SHILVEKESEAKAIKKQLDEGGDFAKIAKAKSTDTGSATKGGDLGYFTKGKMVE-EFENY 204 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 F +G + I FGY I V++ K + ++ I + K+++ Sbjct: 205 AFKDGVEGKISDPIKTQFGYHIIKVTDRKEKKDFTLEKESDRIKKALAEEKSAQ 258 >gi|47568364|ref|ZP_00239065.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241] gi|47554912|gb|EAL13262.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241] Length = 285 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 82/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+A + + +K K+ Y E R+ ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVSDADVDKEVQKAKNQYGDQFTAVLENNRLKDEADFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSVTEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I ++ K F Sbjct: 176 SKEKGGDLGYFNSGKMT-PEFETAAYKL-KVGQISDPVQSPNGYHIIKLTGKKD--LQPF 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + ++ Sbjct: 232 NEVKDSIRKNLEAERIAD 249 Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 GK P E +++ V P+G Y +++ + EV Sbjct: 188 SGK---MTPEFETAAYKL----KVGQISDPVQSPNG-YHIIKLTGKKD--LQPFNEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEAERIAD 249 >gi|294085490|ref|YP_003552250.1| PPIC-type PPIASE domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292665065|gb|ADE40166.1| PPIC-type PPIASE domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 278 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +++++ LQ Y+ S E T ++ + +A +SL G F ++A+E+ Sbjct: 113 KMTDEALQQAYDTFVADEASREQITASHILVAAEDDAVAIIKSLNDGADFAEIAKEKSTG 172 Query: 307 LS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG+F + + + + F+L G + FG+ + VS S Sbjct: 173 PSGPNGGELGTFGRGQMV-PAFETAAFALPAGGFSAKPVQTQFGWHVIKVSEKAVKPAPS 231 Query: 364 FQEVKKDIANQMRITKASEKVKED 387 F ++ + N + ++ Sbjct: 232 FDAMRDQLVNSLSRQHLGRVIESL 255 Score = 46.1 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 9/153 (5%) Query: 475 RDRKLEEVLTDVKKDWKTVKTAEE---------VSSKANQLVLEYSKEGKNFRDIGKNLG 525 R++ +E L + + + E + +++ +G +F +I K Sbjct: 111 REKMTDEALQQAYDTFVADEASREQITASHILVAAEDDAVAIIKSLNDGADFAEIAKEKS 170 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 N + F+ P P++ + V KV+ V P Sbjct: 171 TGPSGPNGGELGTFGRGQMVPAFETAAFALPAGGFSAKPVQTQFGWHVIKVSEKAVKPAP 230 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 D L +++ L VI L++ ++ + Sbjct: 231 SFDAMRDQLVNSLSRQHLGRVIESLRADQTIEL 263 >gi|297537786|ref|YP_003673555.1| SurA domain-containing protein [Methylotenera sp. 301] gi|297257133|gb|ADI28978.1| SurA domain protein [Methylotenera sp. 301] Length = 448 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 64/458 (13%), Positives = 139/458 (30%), Gaps = 71/458 (15%) Query: 5 IRKASRTWVAK------IFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSS 55 +R + V K +L L G + V V + + Sbjct: 1 MRTLIKHIVIKHSAIKHAIQFILLASVLFIGNQFNAQAADIVKLDRIVAIVDQTVITEQE 60 Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + ++ +E L K+IL+ L++ Q+ IGL+ D ++ Sbjct: 61 LESRIATVTAQFKKQ-----GTELPEESVLRKQILERLITDTLQIQYAAQIGLKVDDNQL 115 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-----LSRTDVVGMFVG 170 + R N + F LA++GI+ +++ L +V G Sbjct: 116 DKTVERI----ADQNNLTLTEFSEALAKDGISMRKFRADIRNEITVARLREREVDGRVNV 171 Query: 171 GMRPSNLLLDQAKRFYFENRSVDY-----------IVLNNRHVPAIAD---------PSN 210 + L + + + A D S Sbjct: 172 SESEIDNYLTSQASLNENTDEFEISHILIRTPEEGATEDIQKAKAKVDEALSQLNSGVSF 231 Query: 211 AVLTQWFEKYKDNYRA-----PEYKRISYILFDVHEKEKKIEISN--------DELQAEY 257 A ++ F + + ++ + D + + E+S L+ Sbjct: 232 AKVSASFSDAPNALEGGSLGWKKGSQMPALFLDALKNMQAGEVSAPLRSPNGFHLLKLTN 291 Query: 258 EKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSLKKGKKFIQLAEEQGKSL- 307 ++ + ++ + KEA D + L G+KF LA + + Sbjct: 292 KRGGNSPLVIQQTHARHILIKITEVMSDKEAETKIDAIKERLDNGEKFEVLARQFSEDST 351 Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + L + +++ +L K G + + FG+ I V + S +S + Sbjct: 352 ASNGGDLNWVNPGDTV-PPFENAMNAL-KDGQISAPVRSQFGWHIIQVMERR-SQDMSKE 408 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + ++R KA E ++ + L + + +++ Sbjct: 409 SARLKARQEIRARKADEAYQDWIRELRDRAYVELRLED 446 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 101/303 (33%), Gaps = 33/303 (10%) Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF----- 277 +RA I+ E + ++ +S E+ + + + ++ Sbjct: 146 KFRADIRNEITVARLREREVDGRVNVSESEIDNYLTSQASLNENTDEFEISHILIRTPEE 205 Query: 278 -------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLAD 327 + + DEA L G F +++ +L SLG +P + D Sbjct: 206 GATEDIQKAKAKVDEALSQLNSGVSFAKVSASFSDAPNALEGGSLGWKKGSQMPAL-FLD 264 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKVK 385 ++ ++ + G+ + + G+ + ++N + + + + I ++ + ++ + Sbjct: 265 ALKNM-QAGEVSAPLRSPNGFHLLKLTNKRGGNSPLVIQQTHARHILIKITEVMSDKEAE 323 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 ++E L G + ++R+ + G +P E + + Sbjct: 324 TKIDAIKERLDNGEKFEVLARQFS----EDSTASNGGDLNWVNPGDTVPPFENAMNAL-- 377 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 KD ++ P S I + + R D E +++ + K E Sbjct: 378 ------KDGQISAPVRSQFGWHIIQVMERRSQDMSKESARLKARQEIRARKADEAYQDWI 431 Query: 504 NQL 506 +L Sbjct: 432 REL 434 >gi|75674587|ref|YP_317008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter winogradskyi Nb-255] gi|74419457|gb|ABA03656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter winogradskyi Nb-255] Length = 301 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 6/176 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K +++ ++ Y ++ S + ++ P ++EA + + LKKG F +LA+++ Sbjct: 127 KAALTDSAMKTVYTDASKQITSEQEVHARHILVPTEEEAKKVEEELKKGADFAELAKKES 186 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 K LG F+KE + + F+L + G + + FG+ I V + Sbjct: 187 KDPGASDGGDLGFFTKEQMV-PDFSKVAFAL-EPGKISDPVKTQFGWHIIKVEEKRARKA 244 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 F +VK I + KA + + + L D+ ++ K P Sbjct: 245 PDFDQVKPQIEQFVTR-KAQAEYVAKLRETAKIERLDKPADDKTKSAKPADDKTPA 299 >gi|229084142|ref|ZP_04216431.1| Foldase protein prsA 1 [Bacillus cereus Rock3-44] gi|228699178|gb|EEL51874.1| Foldase protein prsA 1 [Bacillus cereus Rock3-44] Length = 285 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 86/242 (35%), Gaps = 35/242 (14%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I + E+ + + GM E V+ ++++ V Sbjct: 33 ITKDEFYEKMKDRAGSQILRGMV------------------LEKVLVENHKVDDKEVDKK 74 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D L F+ K + + S K + I+ EL+ Y+ Sbjct: 75 FDEYKKQLGDQFDAALKQQGFTEKTFKESVRAELAMTKAIEGSITEKELKENYK------ 128 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 PEI+ ++ ++ A + + L +GK F +LA++ + LG F + Sbjct: 129 --PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFGPGKM 185 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D+ + + KK + + + FGY I V++IK SF + K DI + K Sbjct: 186 VK-EFEDAAYKM-KKDEVSEPVKSQFGYHIIKVTDIKEPE-KSFDDSKADIKKDLVAKKM 242 Query: 381 SE 382 + Sbjct: 243 QD 244 Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 98/259 (37%), Gaps = 54/259 (20%) Query: 247 EISNDELQAEYEKNKEKYFSPEIR--TVEQLVFP----NQKEADEAFQSLKK--GKKFIQ 298 +I+ DE YEK K++ S +R +E+++ + KE D+ F KK G +F Sbjct: 32 DITKDE---FYEKMKDRAGSQILRGMVLEKVLVENHKVDDKEVDKKFDEYKKQLGDQFDA 88 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 ++QG F+++ + A+ + A +G T Sbjct: 89 ALKQQG----------FTEKTFKESVRAELAMTKAIEGSITE------------------ 120 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 +E+K++ +++ + K + K+++E L G S +E++++ + Sbjct: 121 ------KELKENYKPEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKG 174 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G GK V + + + S+ Y +++ + ++ Sbjct: 175 GDLGYFGPGKMVKEFEDAAYKMKKDEVSEPVKSQF--------GYHIIKVTDIKEP-EKS 225 Query: 479 LEEVLTDVKKDWKTVKTAE 497 ++ D+KKD K + Sbjct: 226 FDDSKADIKKDLVAKKMQD 244 >gi|255022705|ref|ZP_05294691.1| foldase protein PrsA [Listeria monocytogenes FSL J1-208] Length = 262 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 82/228 (35%), Gaps = 26/228 (11%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E + +S +L+ Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 L K D + ++ ++GY + + ++ + K ++ ++ Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKG--TYDKEKANVKAAYIESQ 248 >gi|218232569|ref|YP_002365948.1| peptidylprolyl isomerase [Bacillus cereus B4264] gi|218160526|gb|ACK60518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus B4264] Length = 285 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDIKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 ++K +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DIKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|229167152|ref|ZP_04294895.1| Foldase protein prsA 1 [Bacillus cereus AH621] gi|228616386|gb|EEK73468.1| Foldase protein prsA 1 [Bacillus cereus AH621] Length = 283 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%) Query: 199 NRHVPAIADPSNAVLTQWFEKYK----DNYR-APEYKRISYILFDVHEKEKKIEISNDEL 253 N+ + S+ + E K D ++ A E + + +I + Sbjct: 60 NKALLDKYKVSDEEAKKQVEAAKEQMGDKFKVALEQVGLKNEDELKERMKPEIALEKAIR 119 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 +K+ + PE++ V ++ ++K A E + + G+ F LA++ + G Sbjct: 120 ATVTDKDVKDNHKPEMK-VSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTVSKEQG 178 Query: 314 SFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 + P ++ + L G + I S+GY I V++ K F EVK Sbjct: 179 GEIAGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTSYGYHIIKVTDKKE--LKPFDEVKDT 235 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 I + + + + +++ L + + K Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKEADIKVTDKEFKDT 276 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 52/148 (35%), Gaps = 10/148 (6%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK + +M+++ K ++ K ++E + G ++++ ++ Sbjct: 126 DVKDNHKPEMKVSHILVKDEKTAKEVKEKINNGEDFTALAKQYSEDTVSKEQGGEIAGFA 185 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V L + + Y +++ + + +EV Sbjct: 186 PGQTVKEFEEAAYKLDAGQVSEPIKTSY--------GYHIIKVTDKKE--LKPFDEVKDT 235 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++KD + + + Q++ + KE Sbjct: 236 IRKDLEQQRLQDATGKWKQQVINDLLKE 263 >gi|239995521|ref|ZP_04716045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alteromonas macleodii ATCC 27126] Length = 101 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 4/102 (3%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLE IR+ S+ A + ++ + F+ G+ L S SG++ V +V +++ ++ Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERAY 59 Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATL 99 + + + + G + S + +LD L++ + Sbjct: 60 QNQRAQMESQYGESIAQLFSSEQYLADFRRNVLDRLIAEKLI 101 >gi|260428957|ref|ZP_05782934.1| ppic-type ppiase domain protein [Citreicella sp. SE45] gi|260419580|gb|EEX12833.1| ppic-type ppiase domain protein [Citreicella sp. SE45] Length = 282 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 5/159 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +S++ +QA Y+ + ++ ++EA + L G F +LA+ + Sbjct: 114 AVSDEAVQAAYDAEYATAELGKEFNASHILVETEEEAQALIEELNGGADFAELAKTKSTG 173 Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG F + + + GD + + FG+ + +++ + Sbjct: 174 PSGPNGGELGWFGPGMMVEP--FQAAVEQMSVGDISAPVQTQFGWHVIKLNDERNKEAPQ 231 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 +EV+ DI +++ + E E +D Sbjct: 232 LEEVRADIELKLQQEAVQNYIDEKLGAAEVTRTDKADID 270 >gi|228911670|ref|ZP_04075447.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200] gi|228847994|gb|EEM92871.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200] Length = 275 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 21/212 (9%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + E ++ ++N D + + F+ R + Sbjct: 40 EVLSSMMIEQLLLNKYKVSNDEAQKKVDEYKKQMGENFKSTLSQLRFQNEDEFKEKMIKP 99 Query: 240 H---EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 EK K I+ EL+ Y+ V ++ ++K+A E L G F Sbjct: 100 QIALEKAIKASITEKELKDYYK---------PTLKVSHILVKDEKKAQEIKDKLNNGGDF 150 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 LA+E + LG + D ++ + L + G + + SFGY I Sbjct: 151 ASLAKEHSEDPGSKEQGGDLGELDAVKMEPMDSKFKEATYKL-EVGQISEPVKSSFGYHI 209 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 V++ K F + K +I ++ +A Sbjct: 210 IKVTDKKE--LKPFDQEKDNIQKELETMRAKN 239 >gi|313607374|gb|EFR83765.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208] Length = 257 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 32/214 (14%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + S+ + + F +YK Y ++ Y L E + Sbjct: 26 LSDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQKATEANTD 85 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G KF LA+E Sbjct: 86 TSDKVLKDYYKT-----WQPDI-TVSHILVADENKAKEVEQKLKDGAKFADLAKEYSTDT 139 Query: 308 S----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + D L F + D + + ++L KGD + + +GY I + KP+ + Sbjct: 140 ATKENDGQLAPFGPGKM-DPAFEKAAYALKNKGDISAPVKTQYGYHIIQMD--KPATKTT 196 Query: 364 FQEVKKDIAN-----QMRITKASEKVKEDYKRLE 392 F++ KK + Q+ + +KE++K+ Sbjct: 197 FEKDKKAVKASYLESQLTTENMQKTLKEEFKKAN 230 >gi|323526035|ref|YP_004228188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] gi|323383037|gb|ADX55128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] Length = 259 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 6/146 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK ++ E+ A Y + E + ++ N+++A + +K G F +L Sbjct: 103 EDFVKKNAPTDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKGGASFEEL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A++ K G +S AD+ L +KG + +H FG+ I V + Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHL-QKGQMSDTPVHTQFGWHIIRVDD 220 Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381 ++ ++V+ I Q++ K Sbjct: 221 VRSITPPPLEQVRPQIVQQIQQEKLQ 246 Score = 41.9 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G S +E++++ P G D+ + A + Sbjct: 142 EQQAKDLIAKIKGGASFEELAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 D V G + +++ + LE+V + + + K Sbjct: 196 HLQKGQMSDTPVHTQFG-WHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQ 246 Score = 40.7 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F ++ K + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KGGASFEELAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + Q + ++ L + L+ + Sbjct: 201 QMSDTPVHTQFGWHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259 >gi|229143873|ref|ZP_04272292.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24] gi|228639634|gb|EEK96045.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24] Length = 285 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDIITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NIGQISNPVKSSNGYHVIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKDSIRKNLEEERTADPVFSK 254 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNIGQISNPVKS--SNGYHVIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|330689730|pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252 Score = 100 bits (248), Expect = 9e-19, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 83 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 142 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T + +FGY Sbjct: 143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 201 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 202 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 243 >gi|320332054|gb|EFW87990.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. glycinea str. race 4] Length = 440 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEKFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|227499598|ref|ZP_03929705.1| possible peptidylprolyl isomerase [Anaerococcus tetradius ATCC 35098] gi|227218357|gb|EEI83611.1| possible peptidylprolyl isomerase [Anaerococcus tetradius ATCC 35098] Length = 249 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 78/177 (44%), Gaps = 6/177 (3%) Query: 217 FEKYKDNYRAPEYKRISYIL-FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++K K+ E + + + + +H+ +++++ E++ YE NKE P + + Sbjct: 63 YDKDKEFVDELELVKNNMLKNYAMHKIFEQVKLDEAEVKQYYEANKETLNPPVLYEASHI 122 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332 + + EA + + + KG +F A++ S SLG F K + D + S+ Sbjct: 123 LVNDLAEAQKIKEEIDKGLEFAVAAKKYSIDPSKANGGSLGKFPKGVMVK-EFQDGLDSI 181 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 G+ + I FGY + + N + T SF ++K + ++ + K E + Sbjct: 182 -NIGEVSKPIKSQFGYHLIKLENKENVDTPSFDKIKDQVYQRLLMVKRQEAYLDKLS 237 >gi|221215070|ref|ZP_03588037.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia multivorans CGD1] gi|221165006|gb|EED97485.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia multivorans CGD1] Length = 260 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ ++++A E +K G KF L Sbjct: 103 ENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDVAPPPFAQVKAQIAQQLVQQKLQ 247 Score = 40.4 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A +L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKELIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + + + + Q + + L + L+ Q + Sbjct: 202 QMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + A + Sbjct: 143 EQQAKELIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 D V G + +++ + +V + + K E + Sbjct: 197 KLQKGQMTDEPVKTQFG-WHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQ 255 Query: 502 KAN 504 +A Sbjct: 256 QAK 258 >gi|217958742|ref|YP_002337290.1| peptidylprolyl isomerase [Bacillus cereus AH187] gi|229137952|ref|ZP_04266551.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26] gi|217064761|gb|ACJ79011.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH187] gi|228645609|gb|EEL01842.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26] Length = 285 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + S+ + + +K K+ Y + + L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVASPNGYHIIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + S+ Sbjct: 232 DEVKDSIRKNLEEERISD 249 Score = 39.6 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + VA P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVASPNG-YHIIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + ++ Sbjct: 238 IRKNLEEERISD 249 >gi|150388008|ref|YP_001318057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus metalliredigens QYMF] gi|149947870|gb|ABR46398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus metalliredigens QYMF] Length = 319 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 45/364 (12%), Positives = 106/364 (29%), Gaps = 93/364 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG------LDKKILDN 92 V V F + + G+ + + G + + I++ Sbjct: 32 SQDAAAEVNGATVSMEEFDKTLALFKLSYEMQYGYNEDIFQQDIGGMTLLENIKEGIMEK 91 Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 L+S + + + GL + ++ + +E Sbjct: 92 LISDVLIAEKAVESGLTVSEEEITEA---------------YEPYRVY--------EESD 128 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 ++++ L ++ F+ ++LL + + FY EN + + Sbjct: 129 ENFSAFLKENEIDETFIREQVKKDILLFKYRDFYNENLEM----------------TEEA 172 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 ++F++ + + E + Sbjct: 173 ARKFFDENPEMFSTQEA-----------------------------------------SA 191 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADS 328 ++ + ADE L+ G+ F LA+E LG F + + ++ Sbjct: 192 RHILVADLALADELVVRLESGEDFATLAQEYSTDPGSAVQGGDLGFFPRGVMV-PEFEEA 250 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F+ G+ + GY I V + + F E+K+ I ++ + + ++E Sbjct: 251 SFT-QPIGEVGAPVQTQHGYHIILVEDRVDNSY-DFDEMKESIMGYLKNLEFEKHLEELV 308 Query: 389 KRLE 392 E Sbjct: 309 GNAE 312 >gi|78066682|ref|YP_369451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] gi|77967427|gb|ABB08807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] Length = 260 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y+ + + ++ N+++A + +K G KF L Sbjct: 103 ESFLKKNQPTDAEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + D+ + + Q + + L + L+ Q + Sbjct: 202 QMTDTPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260 Score = 38.0 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 7/112 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + A + Sbjct: 143 EQQAKDLIAKIKAGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 D V G + +++ + ++V + + K Sbjct: 197 KLQKGQMTDTPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQ 247 >gi|329901823|ref|ZP_08272915.1| Peptidyl-prolyl cis-trans isomerase domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327549006|gb|EGF33618.1| Peptidyl-prolyl cis-trans isomerase domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 5/155 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + KK +S+ +++AEY+K K E R ++ + EA LK G KF LA Sbjct: 90 DYVKKHPVSDADIKAEYDKFKATAGDKEYR-ARHILVEKEDEAKAIIVKLKAGAKFEDLA 148 Query: 301 E---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + G + + L S +D++ +LAK + FG+ + + + + Sbjct: 149 KASKDPGSAANGGDLDWASPASFVKP-FSDAMVALAKGSYTEVPVKTQFGFHVIKLEDTR 207 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + +EVK I+ ++ K E +E + + Sbjct: 208 AAKVPTLEEVKPQISESLQQKKLQEYQQELRAKAK 242 Score = 41.1 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 1/130 (0%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K+++ E +A ++++ K G F D+ K N + F Sbjct: 116 KEYRARHILVEKEDEAKAIIVKL-KAGAKFEDLAKASKDPGSAANGGDLDWASPASFVKP 174 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 + + P++ + V K+ +++ V ++ +++ + + L Sbjct: 175 FSDAMVALAKGSYTEVPVKTQFGFHVIKLEDTRAAKVPTLEEVKPQISESLQQKKLQEYQ 234 Query: 608 AYLKSQYSVT 617 L+++ V Sbjct: 235 QELRAKAKVQ 244 Score = 37.3 bits (85), Expect = 8.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + V + +P S KQ +A + L K + + L++ L Sbjct: 8 AQNLAVVNGKSIPSSRADLMVKQ-----------AATQGQADTPELRKMVKEELINREVL 56 Query: 100 DQFIEDIGLEADHG 113 Q + +GL Sbjct: 57 VQEADKLGLGNSAD 70 >gi|300704055|ref|YP_003745657.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum CFBP2957] gi|299071718|emb|CBJ43042.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia solanacearum CFBP2957] Length = 265 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL +YEK K ++ + + ++ + +A LK G F ++ Sbjct: 102 EDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG+ T + FG+ + + + Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDT 221 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + +F++VK + M + K + K L E Sbjct: 222 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 261 >gi|289209139|ref|YP_003461205.1| peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix] gi|288944770|gb|ADC72469.1| Peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix] Length = 475 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 46/416 (11%), Positives = 127/416 (30%), Gaps = 68/416 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + VG V + + ++ + + L +++++ L+ Sbjct: 71 DRILAVVGDDVVTQRELVERMNLVAQQMMERGTRPPDRD-----TLARQVMERLIVERVQ 125 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ D + + ++N+ + L ++G++ + + L Sbjct: 126 LQEAQRVGINIDEMTLNRAMENI----ARENRMTLPQLRQALLQDGVDFNAFREQIRNEL 181 Query: 160 SRTDVVG-MFVGGMRPSNLLLD--------------------------------QAKRFY 186 + + +R S+ + Q Sbjct: 182 TVNQLQRRQVDNQIRVSDQEIADLIASESGAIDRGVRYRIAHIQVSLPRGADSGQIATAR 241 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + R + V + S + E +R I + + Sbjct: 242 EKARELRQRVREGEDFAS-VAISESDAPDALEGGDLGWRT--AGEIPSVFAREAVLMRTG 298 Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290 EIS+ + ++ V ++ +++A+ + + Sbjct: 299 EISDVLRSPNGFHIMKLVDREGGDQTRVRQTQVRHILISPDQVRSDEEARRQAESLYNRI 358 Query: 291 KKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 ++G F LA + G + LG S + +++ +L + G+ + + F Sbjct: 359 REGSDFEALARANSDDPGSAAQGGQLGWISPGELV-PEFEEAMNAL-QPGEISEPVESQF 416 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 G+ I V + + S ++++ ++ K E+++ +RL + + +D Sbjct: 417 GWHIIEVLDHRE-VDTSREQIRARAREILQNRKREEEIELWMRRLRDEAYVEYRVD 471 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 106/308 (34%), Gaps = 33/308 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 + +R ++ + + +I +S+ E+ + + Sbjct: 171 NAFREQIRNELTVNQLQRRQVDNQIRVSDQEIADLIASESGAIDRGVRYRIAHIQVSLPR 230 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326 +++A E Q +++G+ F +A + +L LG + IP V Sbjct: 231 GADSGQIATAREKARELRQRVREGEDFASVAISESDAPDALEGGDLGWRTAGEIPSVFAR 290 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-DIANQMR---ITKASE 382 +++ L + G+ + V+ G+ I + + + V++ + + + ++ E Sbjct: 291 EAV--LMRTGEISDVLRSPNGFHIMKLVDREGGDQT---RVRQTQVRHILISPDQVRSDE 345 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + + + L + G+ + ++R G G+ V P E+ + Sbjct: 346 EARRQAESLYNRIREGSDFEALARANSDDPGSAAQGGQLGWISPGELV---PEFEEAMNA 402 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + P V G + +++ + D E++ ++ + K EE+ Sbjct: 403 L----QPGEISEPVESQFG-WHIIEVLDHR-EVDTSREQIRARAREILQNRKREEEIELW 456 Query: 503 ANQLVLEY 510 +L E Sbjct: 457 MRRLRDEA 464 >gi|161524535|ref|YP_001579547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|189350709|ref|YP_001946337.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans ATCC 17616] gi|160341964|gb|ABX15050.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|189334731|dbj|BAG43801.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans ATCC 17616] Length = 260 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y+ + + ++ ++++A E +K G KF L Sbjct: 103 ENFLKKNQPTDAEVKARYDDLVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDVAPPPFAQVKAQIAQQLVQQKLQ 247 Score = 40.4 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A +L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKELIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + + + + Q + + L + L+ Q + Sbjct: 202 QMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 47/164 (28%), Gaps = 19/164 (11%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKV---------KEDYKRLEEFLALGTSMDE 403 + N + EVK + ++ + + ++ K L + G ++ Sbjct: 102 IENFLKKNQPTDAEVKARYDDLVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFED 161 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 ++++ P G D+ + A + D V G + Sbjct: 162 LAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQKLQKGQMTDEPVKTQFG-W 214 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKAN 504 +++ + +V + + K E + +A Sbjct: 215 HIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAK 258 >gi|228988998|ref|ZP_04149028.1| hypothetical protein bthur0001_56200 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770720|gb|EEM19255.1| hypothetical protein bthur0001_56200 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 299 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 94/245 (38%), Gaps = 32/245 (13%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224 G + L ++ + D I L + S+ + ++ K + Sbjct: 40 SGTISKDELYNRMVDKIGQRTLDDLITLTV--LQKKYKVSDGEIDDEIKRLKSEFGNSFN 97 Query: 225 --------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 E + I + ++I + +L+A YE+ K PEIR V Sbjct: 98 DFLSQNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALYEQKK-----PEIR-VSH 151 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330 ++ ++ A + + G+ F LA+E + ++ +G F + + + D+ Sbjct: 152 ILVSDETLAKDIKSKIDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMV-QAFQDAAR 210 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYK 389 L K G+ + + FGY + + + K SF+++K + +++ K K+ + + Sbjct: 211 KL-KVGEVSQPVKTEFGYHVIKLLDEK--KLPSFEQMKPQLQSELISNKMDQAKINAEIQ 267 Query: 390 RLEEF 394 +L + Sbjct: 268 KLLDK 272 >gi|153951254|ref|YP_001398165.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei 269.97] gi|152938700|gb|ABS43441.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei 269.97] Length = 273 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 21/243 (8%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKY--K 221 V G S+ + + F R D+ L + A+ + +L ++ K Sbjct: 25 ATVNGKSISDTEVSEF--FASMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEK 82 Query: 222 DNYRAPEYKRISYILFD---VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D E R + + I+I +++A Y++NK+KY P + ++ Sbjct: 83 DPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVA 142 Query: 279 NQKEADEAFQSLKK------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADS 328 +KEA + LK KF +LA+E+ LG F + + D+ Sbjct: 143 TEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDA 201 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F+L T + +FGY + N + + F EVK+ I N ++ + + + + Sbjct: 202 AFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKG 261 Query: 389 KRL 391 + L Sbjct: 262 QDL 264 >gi|229171909|ref|ZP_04299476.1| Foldase protein prsA 2 [Bacillus cereus MM3] gi|228611543|gb|EEK68798.1| Foldase protein prsA 2 [Bacillus cereus MM3] Length = 285 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 80/189 (42%), Gaps = 10/189 (5%) Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEY 257 + D + + + ++Y D + A E R+ ++ + K+ ++ ++ Sbjct: 66 TKKYKVSDDDVDKEVQKAKKQYGDQFTAVLENNRLKDEADFKNQIKFKLAMNEAIKKSVT 125 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313 EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L LG Sbjct: 126 EKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKDKGGDLG 184 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 F+ + + + L K G + + GY I +++ K + EVK I Sbjct: 185 YFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLTDKKD--LKPYDEVKDSIRK 240 Query: 374 QMRITKASE 382 + + ++ Sbjct: 241 NLEAERIAD 249 Score = 38.4 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + V P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKD--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEAERIAD 249 >gi|217076606|ref|YP_002334322.1| basic membrane protein, putative [Thermosipho africanus TCF52B] gi|217036459|gb|ACJ74981.1| basic membrane protein, putative [Thermosipho africanus TCF52B] Length = 333 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 113/371 (30%), Gaps = 80/371 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQE-----LGMISQKIGFVV-NSERARSVGLD--KKILD 91 +STV V + + + + + + Q V+ N+E V L + +LD Sbjct: 24 TSTVAVVNGEAITLEQLNRAADVQKLMIGISQVDQTFFSVLSNTEEGVKVILRYKRVVLD 83 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 +LV+ + QF + G V + L ++GI+EK + Sbjct: 84 DLVNKLLIVQFAQKYGARLSEEEVRNVV--------------DKQISDYLDQQGIDEKTF 129 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + M + + E V A S+ Sbjct: 130 DMYL-------QYANMGTLEDFKEKMYFETLVNLSLERL--------FNVVTKDATVSDE 174 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 L +++K+ D Y P +S Sbjct: 175 ELMDYYQKHIDEYSTPTQYTLSL------------------------------------- 197 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 + F N+K A+ + G+ F +A E G +S + +++ L + I + Sbjct: 198 ---IAFDNEKVANAVKTKIVSGETFDSIASEYG--ISQFKYENIAEDTTFPGKLWNYIKN 252 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + G I Y I V N+ P + F EV+++I+N + K Sbjct: 253 APQ-GALLGPIDVDEKYYIFKVENVVPMQSKKFDEVREEISNMILSEKKKNMWANFIDSE 311 Query: 392 EEFLALGTSMD 402 ++++ Sbjct: 312 FSKFKNESTVE 322 >gi|148925955|ref|ZP_01809642.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844941|gb|EDK22045.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter jejuni subsp. jejuni CG8486] Length = 207 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 38 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 97 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T + +FGY Sbjct: 98 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 156 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 157 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 198 >gi|283956008|ref|ZP_06373497.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 1336] gi|283792484|gb|EFC31264.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 1336] Length = 273 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 104 DKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 163 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T I +FGY Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPIKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264 >gi|206560348|ref|YP_002231112.1| putative exported isomerase [Burkholderia cenocepacia J2315] gi|198036389|emb|CAR52285.1| putative exported isomerase [Burkholderia cenocepacia J2315] Length = 260 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ N+++A + +K G KF L Sbjct: 103 EGFLKKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + D+ + + Q + + L + L+ Q + Sbjct: 202 QMTDTPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260 Score = 39.2 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + A + Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 D V G + +++ + ++V + + K E + Sbjct: 197 KLQKGQMTDTPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQ 255 Query: 502 KAN 504 +A Sbjct: 256 QAK 258 >gi|254247979|ref|ZP_04941300.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia PC184] gi|124872755|gb|EAY64471.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia PC184] Length = 260 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++ Y++ + + ++ N+++A + +K G KF L Sbjct: 103 ESFLKKNQPTDAEVKTRYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247 Score = 43.8 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + D+ + + Q + + L + L+ Q + Sbjct: 202 QMTDAPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + A + Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 D V G + +++ + ++V + + K E + Sbjct: 197 KLQKGQMTDAPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQ 255 Query: 502 KAN 504 +A Sbjct: 256 QAK 258 >gi|257483108|ref|ZP_05637149.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 442 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 88 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 144 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 203 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 204 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 263 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 264 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 323 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 324 NGEDFAELAKSFSEDPGSALNGGDLNWIDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 381 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 382 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 439 Query: 407 REK 409 + Sbjct: 440 AAQ 442 >gi|107028909|ref|YP_626004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116689933|ref|YP_835556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] gi|170733271|ref|YP_001765218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia MC0-3] gi|105898073|gb|ABF81031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116648022|gb|ABK08663.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] gi|169816513|gb|ACA91096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia MC0-3] Length = 260 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ N+++A + +K G KF L Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDIAPPPFDQVKAQIAQQLVQQKLQ 247 Score = 43.8 bits (102), Expect = 0.099, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + D+ + + Q + + L + L+ Q + Sbjct: 202 QMTDAPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + A + Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 D V G + +++ + ++V + + K E + Sbjct: 197 KLQKGQMTDAPVKTQFG-WHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQ 255 Query: 502 KAN 504 +A Sbjct: 256 QAK 258 >gi|296127129|ref|YP_003634381.1| hypothetical protein Bmur_2107 [Brachyspira murdochii DSM 12563] gi|296018945|gb|ADG72182.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563] Length = 484 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 67/486 (13%), Positives = 156/486 (32%), Gaps = 75/486 (15%) Query: 8 ASRTWVAKIF--LV------VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56 ++ V K L +L V FL+ + T+ SV + S + Sbjct: 10 KKKSPVVKTLQWLGVSAVSILLIVYFLVV----DTRGSQKTPTIGSVNGTPIYYTSTSPY 65 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++K ++ Q +G +N+E + ++ VS L+ + + Sbjct: 66 GRAFK-QIEAYYQSLGIQINNEMYQY--IEDLAFRRAVSTILLNDVARK-NINVSDNFIV 121 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPS 175 + F + ++ + S + EK + + + ++ + Sbjct: 122 EAMKS--EFIDTNGVYNEMAYESFIKNSTQAEKLRIEKDLRESILSQTISSELFTSIKIN 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +L + + + F R ++ + ++ + + + L ++F K N+ Sbjct: 180 SLDIQKEYKREFTKRDIEMVYIDAAAIVQSNEIAVNDLEKYFTDNKTNFV---------- 229 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + ++ + AD +++LK Sbjct: 230 ---------------------------------QADISWIMLESGGVADNLYKTLKDDIT 256 Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F + A E+G + ++ LG +K +P A+ IFS K I+ + Y I V+ Sbjct: 257 LFEKSALEKGLNTNNYKLGYITKMQMPSDDFANKIFSDNKGQKLLEPIYANGYYYIVLVN 316 Query: 355 NIKPSFTVSFQEVKKD-IANQMRITKASEKVK-EDYKRLEEFLALGTSMDEISRREKIVS 412 +I+ + +V ++ + N+ + ++ E K+ E A +++ + R Sbjct: 317 DIRIPE--KYTDVNQNVLKNEYLNANINTLLEAEKTKQAEVLKAAAANINNLQRLNGNGY 374 Query: 413 IDL-----PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 I P G+ + + + + L +G + Sbjct: 375 IRYYRPSQPFSYNQGRLSTVDGTIIPDSSTEAFYNHVFSLQTNTVSDVIKLDNGVAVIKL 434 Query: 468 IKESIP 473 I E P Sbjct: 435 ISEEKP 440 >gi|254459474|ref|ZP_05072890.1| ppic-type ppiase domain protein [Rhodobacterales bacterium HTCC2083] gi|206676063|gb|EDZ40550.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 281 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 67/190 (35%), Gaps = 12/190 (6%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK-------IEISNDELQAEYEKNKE 262 + V+ Q + P+ R++ + ++ D + A YEK Sbjct: 69 DQVIQQTILAAQAGGDTPDRVRLALENERRALMAAEHMDVVLADAVTEDAVAAAYEKTYA 128 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEY 319 ++ + EA L G F +LA+E+ S +LG F Sbjct: 129 GAVPEREFDASHILVETEDEAKALVTDLDGGADFAELAKEKSTGPSGPRGGALGWFGTGQ 188 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + +++ + + G + I FG+ + +++ + +V+ D+ Q+R+ Sbjct: 189 MV-PEFENAVKDM-EVGAVSTPIKTQFGWHVIKLNDTRSEDAPKIDDVRADLEQQVRMET 246 Query: 380 ASEKVKEDYK 389 + + + Sbjct: 247 VDAYIAKLTE 256 >gi|157414878|ref|YP_001482134.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81116] gi|157385842|gb|ABV52157.1| cell binding factor2 (major antigen PEB4A) [Campylobacter jejuni subsp. jejuni 81116] gi|307747515|gb|ADN90785.1| Cell-binding factor 2 [Campylobacter jejuni subsp. jejuni M1] Length = 273 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGSKGKELD 163 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T + +FGY Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264 >gi|149182999|ref|ZP_01861454.1| post-translocation molecular chaperone [Bacillus sp. SG-1] gi|148849283|gb|EDL63478.1| post-translocation molecular chaperone [Bacillus sp. SG-1] Length = 324 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 99/267 (37%), Gaps = 21/267 (7%) Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 + + + + D + V + + L F+ + Y E Y Sbjct: 55 TPQMEQALQELVLKKVLGDKYEVTEEEVDEKLNEAKDQLGPQFDMFLSQYNLNEESFREY 114 Query: 235 I---LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + L IE+S DELQ Y+ K + V ++ +++ A E Q L Sbjct: 115 LELQLLQEKAATADIEVSEDELQEYYDNWKPEI------EVRHILVDDEETAKEVKQKLA 168 Query: 292 KGKKFIQLAEEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G KF LA+E G + ++++ L K G + + Sbjct: 169 DGAKFEDLAKEYSNDPGSAENGGSLGWVDYEGRQNFVPEFSEALEKL-KTGKVSEPVKTQ 227 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEFLALGTSMDEI 404 +G+ I V++ K SF E+K ++ ++++K + EK+++ K + E L +++ Sbjct: 228 YGFHIIEVTDKKEKN--SFDEMKDELEKSLKLSKVTPEKIQQAMKEIVEDAGLEIKDEDL 285 Query: 405 SRREK--IVSIDLPLVDFAGKDVKGKE 429 + + + P V G+ E Sbjct: 286 ENSFEQILNPPETPAVPEEGETPAPSE 312 >gi|331011659|gb|EGH91715.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 440 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWIDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|327438758|dbj|BAK15123.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris StLB046] Length = 282 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 98/265 (36%), Gaps = 45/265 (16%) Query: 146 INEKEYIDHYTK----MLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 I ++E+ + L + VV + + ++ +++ + E Y Sbjct: 35 ITQEEFYNSMKDIAGDQLLQQVVVEQILNDKYKVTDEEIEEELKGVKEQYGESY-----E 89 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 V A ++ + L I + L + +E++++E++ Y + Sbjct: 90 AVLAQSNLTEETLKT---------------NIRFTLLQEKALKD-VEVTDEEIEKYYNQA 133 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFS 316 ++ ++ +++ A E L G+ F +LA+E LG F+ Sbjct: 134 SQELN------ARHILVEDEETAKEIKAKLDAGEDFAKLAKEFSTDPGSGAQGGDLGWFT 187 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQM 375 + D+ ++L + + + + G+ I V+ + ++ K++I + Sbjct: 188 VGTMV-PEFNDAAYAL-EIDEISEPVQSEHGFHIIQVTEKRDVKDYGKLEDKKEEIRESI 245 Query: 376 RITKA------SEKVKEDYKRLEEF 394 TKA +E +KE ++++ Sbjct: 246 AATKADWNTKMAELIKEADVKVKDK 270 >gi|319901400|ref|YP_004161128.1| peptidyl-prolyl cis-trans isomerase [Bacteroides helcogenes P 36-108] gi|319416431|gb|ADV43542.1| peptidyl-prolyl cis-trans isomerase [Bacteroides helcogenes P 36-108] Length = 712 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 87/721 (12%), Positives = 210/721 (29%), Gaps = 124/721 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + V + + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETVSAQDYQTMVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + ++ G S+ ++ + ++ V +++ + +GL + I Sbjct: 61 EYTEVVKFSSGVSALSDE-QTNQIKDEVWRRYVENKLVEKEAKKLGLTVSKAELQAIIDA 119 Query: 120 -----ARSPLFHGK-DNKFS---------------------------------------- 133 + F F Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPSQYAEYYDSMYKFWSFIEKS 179 Query: 134 ------HDVFVSRLAREGIN-EKEYIDHYTKMLSRTDVV-------GMFVGGMRPSNLLL 179 + + + + + + E D + ++++D++ + + + L Sbjct: 180 LVQARLQEKYQALITKSLFSNPVEAQDAFDARVNQSDLLLTAIPYSSIVDSTITVTEGEL 239 Query: 180 DQAKRFYFEN--RSVDYIVLNNRHVPAIADPSN-AVLTQWFEKY-------KDNYRA--- 226 A E + V+ + V A P + A + + E+Y +Y Sbjct: 240 KAAYDKKKEQFRQYVEARNIKFIDVQVTASPEDKAAIQKEMEEYTTQLAGTPSDYTTFVR 299 Query: 227 -----PEYKRISYILFD-VHEKEKKIE-------------ISNDELQAEYEKNKEKYFSP 267 Y + Y + +++ ++++ + + K Sbjct: 300 STGSTVPYVDLYYTSKSLPADIAARLDSVSVGGVYGPYYNVTDNTINSF--KKLASVTMA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319 + Q+ + AD + ++K G F +A++ G++ + IS ++ Sbjct: 358 DSIEFRQIQVTAEDAGKTKSLADSIYNAIKGGANFADVAKKYGQTGEPTWISSANYEGAQ 417 Query: 320 IPDVSLA--DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I +L +I +L + + + VI V++ K + V I + Sbjct: 418 IDGDNLKYITAITTLGQNELMNLPLGQAN--VILQVTDKKANKDKYKVAV---IKRPVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E + Y +F+A +++++ + L +D + + + Sbjct: 473 SK--ETYSKAYNDFSQFIAANNTLEKMVANAEDAGYRL--LDKTDLYSSEHGIGGVKGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 L F + V + +P R L V +K + K AE Sbjct: 529 DALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLKFEIIRDKKAE 588 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 ++ + + KN + S+ +S + Sbjct: 589 KIMADMKAANATSFDQYKNM---ANAVSDSVKHVTFAASAYVPALRTSEPLVSAYAAMAD 645 Query: 558 EMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 PI+ V + K+ ++ + L M + + ++ L + V Sbjct: 646 LNKLSAPIKGNGGVFVLQPYAKEKLNETFNRETEETTLANMHAR-MASQFMSDLYLKADV 704 Query: 617 T 617 Sbjct: 705 K 705 >gi|169824179|ref|YP_001691790.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328] gi|302380852|ref|ZP_07269315.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3] gi|167830984|dbj|BAG07900.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328] gi|302311347|gb|EFK93365.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3] Length = 321 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 134/380 (35%), Gaps = 79/380 (20%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 + + + ++ ++ +G+ V +G++ + + Q I F N+ Sbjct: 4 FLAIVLAMMMVMVTACSNKPNGA--VAKIGKEYIYQKDVDKVMEDYKQYYGQDI-FNPNT 60 Query: 78 ERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 E+ + + KI+D L++ ++ ++D +E V E+ + + D Sbjct: 61 EQGKEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDK---LQKQLGG--AD 115 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F +L +E + E+ + K L + F Sbjct: 116 KFKEQLKKENMTEQALKEQIEKQLKNKKLSQQF--------------------------- 148 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQ 254 PS+ + F+K D Y +ILF + + K ++ S + + Sbjct: 149 -------EKDFKPSDKEIKDEFDKNIDTYT---QYNADHILFSGKDAKGKNLDASKLKAK 198 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 + + AD+ ++ +K GK F ++A+ + + S Sbjct: 199 S-------------------------ELADKTYEEVKNGKNFNEVAKAKSEDPSAKQNSG 233 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + +D++ + K G+ + + FGY I +++ K++ Sbjct: 234 KLGDFLSSTMVK-EFSDALKKM-KPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQN 291 Query: 371 IANQMRITKASEKVKEDYKR 390 I + EKV++++++ Sbjct: 292 IKTAISNKIIQEKVQKEFEK 311 >gi|56963292|ref|YP_175023.1| protein export protein PrsA [Bacillus clausii KSM-K16] gi|56909535|dbj|BAD64062.1| protein export protein PrsA [Bacillus clausii KSM-K16] Length = 345 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 105/269 (39%), Gaps = 34/269 (12%) Query: 209 SNAVLTQWF----------EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 S+ L +F ++ K+ PE + + ++ S++ LQ +E Sbjct: 94 SDEDLVNFFTNSGYPLDNIDQLKEELIVPE-------IAMKQLSAEGVDTSDETLQTYFE 146 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGS 314 +N+E++ E T ++ +++ A+E L G+ F +LAEE + LG+ Sbjct: 147 ENQEQF---EQITARHILVEDEETANEVKDRLNDGEDFAELAEEYSTDTQSAANGGDLGT 203 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 F +E + ++ FSL D + + FG+ I V++ +F++ + + +Q Sbjct: 204 FDREQMV-PEFSEVAFSL-DVNDISDPVESQFGFHIIEVTDKLD----TFEDNRDFVYDQ 257 Query: 375 MRITKASE---KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + + + + E + + D I + + + + G+E A Sbjct: 258 IISEQGKDFTTVLGELIDKYNVKIND-EEFDAIVTQYTTPIEEPAVEEEPADGENGEEPA 316 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 E+ + D +++++ + Sbjct: 317 DEENTEEDESAEDTEADTSNENNSEDTEE 345 >gi|207723563|ref|YP_002253962.1| isomerase rotamase protein [Ralstonia solanacearum MolK2] gi|207743079|ref|YP_002259471.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609] gi|206588764|emb|CAQ35727.1| isomerase rotamase protein [Ralstonia solanacearum MolK2] gi|206594476|emb|CAQ61403.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609] Length = 243 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL +YEK K ++ + + ++ + +A LK G F ++ Sbjct: 80 EDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 139 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFT-PVIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG+ T + FG+ + + + Sbjct: 140 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDT 199 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + +F++VK + M + K + K L E Sbjct: 200 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 239 >gi|89094171|ref|ZP_01167114.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp. MED92] gi|89081646|gb|EAR60875.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp. MED92] Length = 430 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 58/402 (14%), Positives = 114/402 (28%), Gaps = 62/402 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + S + + + E L K++L+ L+ + Sbjct: 31 DRIAAVVNEGIILQSELEQRTSITREQLQSR-NTRIPPEHI----LRKQVLNRLIIESIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ ++ G IA N S D F L EG + + + + Sbjct: 86 KQMAEQNGVRVSDSQLNGAIANIAA----QNGLSIDQFREALIAEGRDYNQAREQIRNEM 141 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSN 210 V V +R S L I ++ P I + Sbjct: 142 LINSVQQNLVNRRIRVSEQELSNFLNSEDGKSQASAEFLLGHILIATPSQASPEIIQQAE 201 Query: 211 AVLTQWFEK--YKDNY-------------------------RAPEYKRISYILFDVHEKE 243 + + F+K ++ PE + E Sbjct: 202 SKAKEIFDKLNNGADFAETAVEFSNAPNALKGGDLGWRKANELPEALSKAVRKLSPGEFS 261 Query: 244 KKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 K + S + +K + R V ++ +++ + +Q + G Sbjct: 262 KPVRSPSGFHILLAKDKRGGAVQLIDQRLVSHILLKPTEIRTNEQAKRQISQLYQRIASG 321 Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + F LA+E + S G +++ + S A G + FG+ I Sbjct: 322 EDFAALAKEFSDDPASGSEGGSLGWTQNGQMVPEFEQVMNSTA-VGQVSEPFESRFGWHI 380 Query: 351 AHVSN-IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 V + + QE + +R K +E++ + + Sbjct: 381 LTVLDTRTEDMGETMQENRA--RATIRKRKFNEELSNWLREI 420 >gi|320326011|gb|EFW82069.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. glycinea str. B076] gi|330985794|gb|EGH83897.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 440 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|42780354|ref|NP_977601.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987] gi|42736273|gb|AAS40209.1| protein export protein prsA [Bacillus cereus ATCC 10987] Length = 285 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + S+ + + +K K+ Y + + L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVASPNGYHIIKLTDKKA--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + S+ Sbjct: 232 DEVKDSIRKNLEEERISD 249 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + VA P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVASPNG-YHIIKLTDKK--ALKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + ++ Sbjct: 238 IRKNLEEERISD 249 >gi|90420209|ref|ZP_01228117.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans SI85-9A1] gi|90335543|gb|EAS49293.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans SI85-9A1] Length = 320 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 20/228 (8%) Query: 173 RPSNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + + +Q R + R + I + R A A + + + ++ Sbjct: 72 AAAAEVGEQFARLPADQRKLAVLSALIDIKVLARQAEAEALQDDPEVAA-----QIDFLR 126 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 +Y + I+ +EL+A +EK + E ++ ++EA+ Sbjct: 127 ERTLHNAYFARNG-----VANITEEELKARFEKEVAAMPATEEVHARHILLKTKEEAEAV 181 Query: 287 FQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 L G F++LA+E S LG FS + F++ + Sbjct: 182 IAKLDGGADFVELAKESSTGPSGPEGGDLGFFSAGQMV-PEFEKVAFTMEPGTYTKEPVQ 240 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FG+ + V + + F VK + + K V++ L Sbjct: 241 TQFGWHVIKVEEKREAPKPEFDAVKDQVRQVVLREKYMGLVQKARDDL 288 >gi|329769980|ref|ZP_08261377.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325] gi|328837540|gb|EGF87167.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325] Length = 311 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 98/325 (30%), Gaps = 87/325 (26%) Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 E + L K ++ LD++ I + ++ + D F Sbjct: 45 ESIGANQLSKAATSMMIQKVLLDKYKNKINEKVIDEQLNKA-------QEQYGG--KDKF 95 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 L ++G +Y D ++T ++ + G Sbjct: 96 EQILKQKGFTLDQYKDGLKVKAAQTIMINEYAG--------------------------- 128 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 + L + +EK K Y +++IL V +S++E Sbjct: 129 ----------ITEDKLKESYEKNKHQY------HLAHILISVKSSSNPNGLSDEE----- 167 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLG 313 +K+A+E + +K G F LA+E LG Sbjct: 168 ---------------------AKKKAEEVLKKIKDGGDFATLAKEYSNDTGNASNGGDLG 206 Query: 314 SFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 SKE ++ ++L K + V+ FGY I V + K S S+ E+K + Sbjct: 207 WSSKEDNSYVSEFNNAAYALNKD-QVSDVVKTPFGYHIIKVLDTKDS---SYDELKTSLE 262 Query: 373 NQMRITKASEKVKEDYKRLEEFLAL 397 + K L++ Sbjct: 263 EKAAEQAVKNDSTIVSKALKKLFEE 287 >gi|299136387|ref|ZP_07029570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX8] gi|298600902|gb|EFI57057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp. MP5ACTX8] Length = 635 Score = 99.7 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 46/357 (12%), Positives = 110/357 (30%), Gaps = 75/357 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V Q + S ++ S + ++ A + +L +++ L Sbjct: 77 EDVIARVNDQIITRSEYLRS-----EQQLLQEAQQQSASPADFESRRRDLLRDMIDEQLL 131 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +++G+ I +++ S + +++G++ +++ Sbjct: 132 LSKGKELGIT-GDAE---TIRELDEIRKRNHLDSMEALEKAASQQGVSFEDFKQGIRNNA 187 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R VV V + ++A ++ Sbjct: 188 IRQQVVQ---------------------------------EEVSRHLNMTHAQEDAYYAA 214 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + ++ PE +S IL + +++ Sbjct: 215 HGKDFEVPEQIHLSEILVTTPDNATDAQVA----------------------------AA 246 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 Q +AD+ LK G F LA+ + + LG F + + DV L ++ F L + G Sbjct: 247 QAKADDLEAKLKAGTSFADLAKSSSGGPTAAAGGDLGDFKRGSLGDV-LENATFPLPEGG 305 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FT I G+VI V + + +++ + + + ++ + + Sbjct: 306 -FTAPIRTRQGFVILRVDKHQAAGIPPLADIEPQVQQAIYLDALQPALRAYLTKARQ 361 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 5/117 (4%) Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 + K G +F D+ K+ + D + G + F P PI Sbjct: 253 LEAKLKAGTSFADLAKSSSGGPTAAAGGDLGDFKRGSLGDVLENATFPLPEGGF-TAPIR 311 Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVH 619 +V+ +V + + + Q + D L + + + + + Sbjct: 312 TRQGFVILRVDKHQAAGIPPLADIEPQVQQAIYLDALQPALRAYLTKARQDAYMDID 368 >gi|290894110|ref|ZP_06557083.1| rotamase [Listeria monocytogenes FSL J2-071] gi|290556365|gb|EFD89906.1| rotamase [Listeria monocytogenes FSL J2-071] Length = 295 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 27/258 (10%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E + +S +L+ Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388 L K D + ++ ++GY + + T + ++ I +Q+ + +K++ Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKEL 262 Query: 389 KRLEEFLALGTSMDEISR 406 K + D + Sbjct: 263 KAANIDIKDSDLKDAFAD 280 >gi|283954124|ref|ZP_06371649.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 414] gi|283794403|gb|EFC33147.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 414] Length = 273 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 21/243 (8%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---SNAVLTQWFEKY--K 221 V G S+ + + F R D+ L + A+ + +L ++ K Sbjct: 25 ATVNGKSISDAEVSEF--FASMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEK 82 Query: 222 DNYRAPEYKRISYILFD---VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D E R + + I+I +++A Y++NK+KY P + ++ Sbjct: 83 DPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVA 142 Query: 279 NQKEADEAFQSLKK------GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADS 328 +KEA + LK KF +LA+E+ LG F + + D+ Sbjct: 143 TEKEAKDIINELKGLKGKELDAKFSKLAKEKSIDPGSKNQGGELGWFDESTMVKP-FTDA 201 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 F+L T + +FGY + N + + F EVK+ I N ++ + + + + Sbjct: 202 AFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKG 261 Query: 389 KRL 391 + L Sbjct: 262 QDL 264 >gi|225163766|ref|ZP_03726066.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] gi|224801636|gb|EEG19932.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] Length = 568 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 71/575 (12%), Positives = 162/575 (28%), Gaps = 80/575 (13%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M+ I+ + +FL +L V + +F +S +V KV F Sbjct: 1 MISWIQNTFQKHFKWLFLTLLVVV-----IIGFVFVTGSTSNIVGGRGHKVARRDFFGIN 55 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-------ADHG 113 + G S R + +I + + L ++ I L Sbjct: 56 LNSKDGQERVFGDASLSVTLRYGYI--QISEEQLQPFALSRWAS-IHLADTIKLPAPTTD 112 Query: 114 RVWGEIARSPLFHGKDNKFSHDVF----VSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 + I LF F + +E + + V + Sbjct: 113 EIIEHIRSLGLFRNAQGAFDPKRYSDFRDQLKTNPRTSEADVDRVIVDDIRVEKVQKLLA 172 Query: 170 G-GMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 G G +++Q + E R ++D ++ L ++FE Y+ P Sbjct: 173 GPGYTLPADVIEQLSQL--ETRWTLDVASVDYASFSPAVKVGEDTLKKYFEDNALRYQIP 230 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------------- 270 +I YI F + + +++DE + Y N + F P + Sbjct: 231 AKVQIRYIDFPTSARLAETSVTDDEAREYYLANTHRSFKPADKTKTPDLLPKTTPATSAE 290 Query: 271 ---------TVEQLVFPNQKEADEAFQSLKKG------------KKFIQLAEEQGKSLSD 309 + + +++A K ++ +L D Sbjct: 291 DKNADFDAVKTQVIQTLREQKAQRLTAKAAADISLALFNQKVALKDLPAFVKDNNLTLKD 350 Query: 310 ISLGSFSKEYIPD-----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 ++ F + +P ++AD + L ++ I G I + + Sbjct: 351 VA--PFPPQNVPGIFGASPTIADEVAKLTADLPYSDAITTPTGAAILVWEADIAARQPDY 408 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-------GTSMDEISRREKIVSIDLPL 417 EV + + + + E + L + G + + Sbjct: 409 TEVAPRVTADYQADQKRKLFAEAGRTLHAAIETALKQQKPGVTFADAVATAAKAQHLTAK 468 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA--- 474 VD + IP L + + ++ + +++ +P Sbjct: 469 VDTYKDFTRMSPPKDIPG--AALQPLNSLSKGQVGEMILSADQKGILVYVVEKKLPEVTS 526 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + + E+ ++ + + E++ + + + Sbjct: 527 ANPRYAELTNEIAEFNASRSGGEQIQALMEAELAQ 561 Score = 37.3 bits (85), Expect = 8.5, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 9/157 (5%) Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG---KNFRDIGKNLGASLLTTNQIN 535 + V T V + + K + A + L + K+ K+ +L Sbjct: 296 FDAVKTQVIQTLREQKAQRLTAKAAADISLALFNQKVALKDLPAFVKDNNLTLKDVAPFP 355 Query: 536 RMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594 + F I+ +V ++ I + + + + + Sbjct: 356 PQNVPGIFGASPTIADEVAKLTADLPYSDAITTPTGAAIL----VWEADIAARQPDYTEV 411 Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 + D L ++ T+H I+ L +K Sbjct: 412 APRVTADYQADQKRKLFAEAGRTLH-AAIETALKQQK 447 >gi|296501860|ref|YP_003663560.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] gi|296322912|gb|ADH05840.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171] Length = 285 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + + + + EK K Y + +Y L D + + +I+ Sbjct: 57 YEMMAQDIITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENYGLKDEEDFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|229056773|ref|ZP_04196175.1| Foldase protein prsA 1 [Bacillus cereus AH603] gi|228720567|gb|EEL72131.1| Foldase protein prsA 1 [Bacillus cereus AH603] Length = 244 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 78/208 (37%), Gaps = 17/208 (8%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFD 238 E + ++++ V D + F+ K E + Sbjct: 8 QVLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRASL 67 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 E+ + I++ EL+ Y+ ++ ++ A + + L +GK F + Sbjct: 68 AQEQAIEKTITDKELKDNYK---------PQVKASHILVKDEATAKKVKEELGQGKSFEE 118 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ + + LG F + D+ + L KK + + + FGY I V+ Sbjct: 119 LAKQYSEDTASKEKGGDLGFFEHGKMVK-EFEDAAYKL-KKDEVSEPVKTQFGYHIIKVT 176 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 +IK SF++ K D+ ++ KA + Sbjct: 177 DIKEPE-KSFEQSKADLKKELVAKKAQD 203 >gi|225027756|ref|ZP_03716948.1| hypothetical protein EUBHAL_02015 [Eubacterium hallii DSM 3353] gi|224954902|gb|EEG36111.1| hypothetical protein EUBHAL_02015 [Eubacterium hallii DSM 3353] Length = 248 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 6/155 (3%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEE 302 K I+ + +E +A Y ++K + T + ++ ++E+ + + ++ G K F A+E Sbjct: 90 KDIQATQEECEAYYNEHKAMFVKEAKATAKHILTATEEESKKVLEEIESGVKTFEDAAKE 149 Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 S SLG+F + + +++F+ A+ G + FGY + V + Sbjct: 150 YSTCPSKAQGGSLGTFGRGQMVK-EFDEAVFT-AEVGKVIGPVKTDFGYHLIRVDELTGG 207 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 F EV I Q+ K ++K + + E Sbjct: 208 EQSEFAEVYPQIMQQLTTEKQNKKYMAVRQEMIEK 242 >gi|196036230|ref|ZP_03103629.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W] gi|218902361|ref|YP_002450195.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820] gi|228926303|ref|ZP_04089377.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944873|ref|ZP_04107236.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195991205|gb|EDX55174.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W] gi|218539904|gb|ACK92302.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820] gi|228814901|gb|EEM61159.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833400|gb|EEM78963.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 285 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVEKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K K ++ +++ Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F + + + L K G + + GY I ++ Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249 >gi|299136355|ref|ZP_07029539.1| SurA domain protein [Acidobacterium sp. MP5ACTX8] gi|298602479|gb|EFI58633.1| SurA domain protein [Acidobacterium sp. MP5ACTX8] Length = 350 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 50/380 (13%), Positives = 118/380 (31%), Gaps = 75/380 (19%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 V +V + + ++ +L Q+ ++++A S L IL L+ Sbjct: 25 GPQDGVVGTVNGHPILRTEVDKAYNAQLASNPQQ--TAPSADQADS--LRLNILHELIVE 80 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 ++Q L A V ++A ++ + F +RL + E Sbjct: 81 EIVEQRAAKQNLIATDSEVDAKLAEMKA------PYTEEQFQARLKTANLTLDELRRDIR 134 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + L++T + + + + ++ + + Sbjct: 135 RNLTQTKLFN---------------------------------KEIDSKITVTDGDVNNY 161 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 F +KD++ E + +I ++N Q K + + Sbjct: 162 FNAHKDSFNLIENR----------YHLAQILVTNQPAQQSSNLQNSKATTDD-------- 203 Query: 277 FPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +K+ L G F +A E Q + + +G + + A + Sbjct: 204 -EARKKIQALKNRLDTGDDFGTIASNFSENQDTAPNGGDVGFVPESQMKADPTAYAAIMK 262 Query: 333 AKKGDFTPVIHGSF-------GYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEK 383 K G T ++ GY I + + +P+ + V+++I Q+ +++ Sbjct: 263 LKAGQITDILPVLDGTTHKVAGYSIYKLISKEPAGQRDLNDPRVQQNIRQQLHESRSQLL 322 Query: 384 VKEDYKRLEEFLALGTSMDE 403 + L + + + E Sbjct: 323 KASYLEMLRDQAKVENYLAE 342 >gi|302338942|ref|YP_003804148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] gi|301636127|gb|ADK81554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] Length = 358 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 60/411 (14%), Positives = 133/411 (32%), Gaps = 93/411 (22%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK---VPFSSFINSWKQELGMISQKIGF 73 L V+ V F + G+ + + TV +V K + ++ +K G Sbjct: 12 LLGVVLVLFFLCGVVFPVSADLVGQTVATVTLTKTEGISSVQLDQRI-AQVAAARKKAGL 70 Query: 74 VVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF--HGKDN 130 + G+D+ ++LD +++ + Q E G+ ++ +A+ Sbjct: 71 SAD-------GVDRTEVLDAMIAEVLIKQAAERSGISIPQEQIQQVVAKQKASIEQQVGR 123 Query: 131 KFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 + + + + G + ++Y + + + + E Sbjct: 124 PLTDRQYQEVVRSQTGFSWEQYKGSIREQIMQQRYIA--------------------TEK 163 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R + AI P+ + ++ + + PEY R+ I ++ Sbjct: 164 RDM---------FEAIQPPTEKEIQDHYDAHATSITNPEYVRLK------QIFIPTISMN 208 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLS 308 + E QA ++ + A+ L+ G KF L + + S Sbjct: 209 DQEKQA-----------------------ARERLESAWTKLRNGSAKFDDLVLQYSEDES 245 Query: 309 ----DISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +G ++ E +FSL + GD++ VI + G I V+ + + Sbjct: 246 SKYRGGDVGYIARADQRVEKTYGADFFRKLFSL-QTGDYSGVIESNVGLHILKVTEHREA 304 Query: 360 FTVSFQE---------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 +S + V++ I + K +K+ + E L + Sbjct: 305 RILSLDDQIAPDNKMTVREYIRAGLFQEKQQAVLKKALDAVVEDLKAEAEI 355 >gi|222094890|ref|YP_002528950.1| peptidylprolyl isomerase [Bacillus cereus Q1] gi|221238948|gb|ACM11658.1| protein export protein prsA [Bacillus cereus Q1] Length = 285 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEIS--- 249 Y ++ + S+ + + +K K+ Y + + L D + + +I+ Sbjct: 57 YEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAM 116 Query: 250 NDELQAEY-EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 N+ ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L K G + + GY I +++ K + Sbjct: 176 SKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVASPNGYHIIKLTDKKE--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + S+ Sbjct: 232 DEVKDSIRKNLEEERISD 249 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + VA P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVASPNG-YHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + ++ Sbjct: 238 IRKNLEEERISD 249 >gi|241663100|ref|YP_002981460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12D] gi|240865127|gb|ACS62788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12D] Length = 265 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL +Y+K K ++ + + ++ + +A LK G KF + Sbjct: 102 EDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGAKFEDI 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG T + FG+ + + + Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDT 221 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + S+++VK + M + K + K L E Sbjct: 222 RDAKIPSYEDVKPQLLEMMMGDQNWQRSKFQAMLKELREK 261 >gi|46907672|ref|YP_014061.1| protein export protein [Listeria monocytogenes serotype 4b str. F2365] gi|226224045|ref|YP_002758152.1| protein secretion PrsA (post-translocation molecular chaperone) [Listeria monocytogenes Clip81459] gi|254824497|ref|ZP_05229498.1| rotamase [Listeria monocytogenes FSL J1-194] gi|254852070|ref|ZP_05241418.1| rotamase [Listeria monocytogenes FSL R2-503] gi|254932629|ref|ZP_05265988.1| rotamase [Listeria monocytogenes HPB2262] gi|300765586|ref|ZP_07075565.1| protein export protein [Listeria monocytogenes FSL N1-017] gi|67461027|sp|Q71ZM6|PRSA1_LISMF RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|46880940|gb|AAT04238.1| protein export protein [Listeria monocytogenes serotype 4b str. F2365] gi|225876507|emb|CAS05216.1| Putative protein secretion PrsA (post-translocation molecular chaperone) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605367|gb|EEW17975.1| rotamase [Listeria monocytogenes FSL R2-503] gi|293584188|gb|EFF96220.1| rotamase [Listeria monocytogenes HPB2262] gi|293593735|gb|EFG01496.1| rotamase [Listeria monocytogenes FSL J1-194] gi|300513687|gb|EFK40755.1| protein export protein [Listeria monocytogenes FSL N1-017] gi|332311885|gb|EGJ24980.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A] Length = 294 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 27/258 (10%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E + +S +L+ Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388 L K D + ++ ++GY + + T + ++ I +Q+ + +K++ Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKEL 262 Query: 389 KRLEEFLALGTSMDEISR 406 K + D + Sbjct: 263 KAANIDIKDSDLKDAFAD 280 >gi|94266120|ref|ZP_01289835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] gi|93453317|gb|EAT03757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] Length = 335 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 47/359 (13%), Positives = 117/359 (32%), Gaps = 74/359 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S + Q+ + E+A + +++L ++ Sbjct: 38 DRVVAEVNGEIITMSELEREMAGVEQQVLQQAPAA-DREQALTEA-RQQVLSGMIDRLLA 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ V IA+ DN+ + + + +AR + + Y + Sbjct: 96 RQQADRLGIRVGEREVDEAIAQI----LADNRITMEELEAEIARHHGSMENYRRDLQTQI 151 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++ ++ V + +++++ Sbjct: 152 LQSRLLSQ---------------------------------EVRERVVIPERRIKEYYQQ 178 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + +PE +Y + + +DE + Sbjct: 179 HHQEQTSPEE---AYHIL---QIGFNWPPGDDEARE----------------------QA 210 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +++A+E + ++G F +LA + +D LG F K+ + + L + G Sbjct: 211 RRQAEEIHRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEH--IPELEPG 268 Query: 337 DFTPVIHGSFGYVIAHVSNIKPS--FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + ++ + GY + + + T S++E+K I ++ E+ + K L E Sbjct: 269 EISTILETAAGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRE 327 >gi|13472995|ref|NP_104562.1| cell binding factor 2 precursor [Mesorhizobium loti MAFF303099] gi|14023743|dbj|BAB50348.1| mll3467 [Mesorhizobium loti MAFF303099] Length = 303 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 5/137 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ E++A Y++ ++ ++EA+ + L G F +LA E Sbjct: 136 KVTDAEIRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLDGGGDFQKLANEHTSD 195 Query: 307 LS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S LG F + + F+L + FG+ + + + + Sbjct: 196 PSGKSNGGDLGWFGPGQMV-PEFDKAAFALEVGKYTEQPVQTQFGWHVIKLEDKRAKQPP 254 Query: 363 SFQEVKKDIANQMRITK 379 +F +VK + K Sbjct: 255 AFDDVKDQAKQAVIRDK 271 Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 44/129 (34%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 +A ++ + G + ++ +N + + F+ V Sbjct: 169 KEEAEAIIKQLDGGGDFQKLANEHTSDPSGKSNGGDLGWFGPGQMVPEFDKAAFALEVGK 228 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 P++ + V K+ + + D Q + +D +++ L++ V + Sbjct: 229 YTEQPVQTQFGWHVIKLEDKRAKQPPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEIP 288 Query: 620 DNLIQRYLD 628 D +++ +D Sbjct: 289 DAKLKQAVD 297 >gi|86153246|ref|ZP_01071450.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612905|ref|YP_001000297.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81-176] gi|167005249|ref|ZP_02271007.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81-176] gi|143955293|sp|A1VYV6|CBF2_CAMJJ RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen peb4A; Flags: Precursor gi|85842972|gb|EAQ60183.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250443|gb|EAQ73401.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni 81-176] Length = 273 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------G 293 + I+I +++A Y++NK+KY P + ++ +KEA + LK Sbjct: 104 EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 163 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF +LA+E+ LG F + + D+ F+L T + +FGY Sbjct: 164 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F EVK+ I N ++ + + + + + L Sbjct: 223 VILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDL 264 >gi|16803484|ref|NP_464969.1| hypothetical protein lmo1444 [Listeria monocytogenes EGD-e] gi|47095395|ref|ZP_00233005.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|224499704|ref|ZP_03668053.1| hypothetical protein LmonF1_08419 [Listeria monocytogenes Finland 1988] gi|224501615|ref|ZP_03669922.1| hypothetical protein LmonFR_03702 [Listeria monocytogenes FSL R2-561] gi|254827732|ref|ZP_05232419.1| rotamase [Listeria monocytogenes FSL N3-165] gi|254829797|ref|ZP_05234452.1| hypothetical protein Lmon1_00510 [Listeria monocytogenes 10403S] gi|254898390|ref|ZP_05258314.1| hypothetical protein LmonJ_01205 [Listeria monocytogenes J0161] gi|254912118|ref|ZP_05262130.1| protein export protein [Listeria monocytogenes J2818] gi|254936446|ref|ZP_05268143.1| rotamase [Listeria monocytogenes F6900] gi|284801831|ref|YP_003413696.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578] gi|284994973|ref|YP_003416741.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923] gi|46396979|sp|Q8Y759|PRSA1_LISMO RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|16410873|emb|CAC99522.1| lmo1444 [Listeria monocytogenes EGD-e] gi|47016216|gb|EAL07139.1| protein export protein [Listeria monocytogenes str. 1/2a F6854] gi|258600111|gb|EEW13436.1| rotamase [Listeria monocytogenes FSL N3-165] gi|258609038|gb|EEW21646.1| rotamase [Listeria monocytogenes F6900] gi|284057393|gb|ADB68334.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578] gi|284060440|gb|ADB71379.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923] gi|293590088|gb|EFF98422.1| protein export protein [Listeria monocytogenes J2818] Length = 294 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 93/258 (36%), Gaps = 27/258 (10%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E +++S +L+A Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMDVSESKLKAYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388 L K D + ++ ++GY + + T + ++ I +Q+ + +K++ Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKEL 262 Query: 389 KRLEEFLALGTSMDEISR 406 K + D + Sbjct: 263 KAANIDIKDSDLKDAFAD 280 >gi|228938382|ref|ZP_04100992.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971261|ref|ZP_04131889.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977871|ref|ZP_04138252.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407] gi|228781788|gb|EEM29985.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407] gi|228788411|gb|EEM36362.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821244|gb|EEM67259.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938890|gb|AEA14786.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 285 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + + + + EK K Y + E R+ ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEIEKVKKQYGDQFKKVLENNRLKDEEDFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + ++ Sbjct: 232 DEVKNSIRKNLEEERTAD 249 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ S +L+ E K+ Sbjct: 238 IRKNLEEERTADPAFS--QKLLQEELKK 263 >gi|88797590|ref|ZP_01113179.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297] gi|88779762|gb|EAR10948.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297] Length = 404 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 42/381 (11%), Positives = 114/381 (29%), Gaps = 41/381 (10%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + + + L +++LD ++ + Sbjct: 26 DRIAAVANDDVITELQLAQRVEAVRQQYRSNPNVLPTDDV-----LTRQVLDAMILESLQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E L +V I + D ++ + G + ++ + + + Sbjct: 81 MQLAERGNLVIPEQQVNAAIQSIASRQN----MTLDQLLAAVQSSGQSVSDFREQIRREI 136 Query: 160 SRTDVVGMFVG-GMRPSNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++ VG + S+ +++ + ++ L + L Sbjct: 137 TLNELQQQIVGRQIFISDAEVERFLKSQSGQSLQETEYQLYYKRFDVDQQAEADALVDRL 196 Query: 218 EKYKDNYRAPEYKRISYILFD--VHEKEKKIEISNDE------------LQAEYEKNKEK 263 + +P+ + + D + + + L +K + Sbjct: 197 NSGESLLDSPDSRDLGMRTLDQIPSIFRTLVPVLEENEAVLLPRDGVLHLAQLADKTEAA 256 Query: 264 YFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 + E + ++ Q A++ Q + G+ +LA+E + Sbjct: 257 SVNIEEYQLRHILIKTDQLFNAESAQALAEDLRQRVLNGESMAELADEYSQDNGSRGRGG 316 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG + + + S D+ S ++G+ + V +G+ V + + ++ Sbjct: 317 ELGWATLDNYVE-SFRDAARS-TEEGELSDVFRSPYGFHFLRVEGQRTRDVGT-DVLRNQ 373 Query: 371 IANQMRITKASEKVKEDYKRL 391 I NQ+ + SE ++ L Sbjct: 374 IRNQLSQQRYSEALQRWQSEL 394 >gi|91783535|ref|YP_558741.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia xenovorans LB400] gi|91687489|gb|ABE30689.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia xenovorans LB400] Length = 259 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K ++ E+ A Y + E + ++ N+++A + +K G F L Sbjct: 103 EDFVKNNTPTDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S AD+ L K +H FG+ I V ++ Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + ++V+ I Q++ K Sbjct: 222 RNVTPPPLEQVRPQIVQQIQQEKLQ 246 Score = 42.3 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F D+ K + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + Q + ++ L + L+ + Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNVTPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259 Score = 41.5 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G S ++++++ P G D+ + A + Sbjct: 142 EQQAKDLIAKIKAGASFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 D V G + +++ + LE+V + + + K Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDVRNVTPPPLEQVRPQIVQQIQQEKLQ 246 >gi|187928546|ref|YP_001899033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] gi|187725436|gb|ACD26601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] Length = 265 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL +Y+K K ++ + + ++ + +A LK G KF + Sbjct: 102 EDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGAKFEDI 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG T + FG+ + + + Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDT 221 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + S++EVK + M + K + K L E Sbjct: 222 RDAKIPSYEEVKPQLLEMMMGDQNWQRSKFQAMLKDLREK 261 >gi|15604429|ref|NP_220947.1| protein export protein PRSA precursor (prsA) [Rickettsia prowazekii str. Madrid E] gi|20138858|sp|Q9ZCX6|PLP_RICPR RecName: Full=Parvulin-like PPIase; AltName: Full=29.5 kDa outer membrane antigen; AltName: Full=Peptidyl-prolyl cis-trans isomerase plp; AltName: Full=Rotamase plp; Flags: Precursor gi|3861123|emb|CAA15023.1| PROTEIN EXPORT PROTEIN PRSA PRECURSOR (prsA) [Rickettsia prowazekii] gi|4581486|emb|CAA61657.1| parvulin, PPIase-like protein [Rickettsia prowazekii] gi|10303401|emb|CAC10161.1| parvulin-like PPIase [Rickettsia prowazekii] gi|292572198|gb|ADE30113.1| Parvulin-like peptidyl-prolylisomerase [Rickettsia prowazekii Rp22] Length = 282 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K + E V ++ +QKEA+ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFTKLAEEFS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G I + F+L K + + + SFG+ I V KP Sbjct: 176 LDKATASNGGIIGYIILNQPGQLVPEFEQKAFAL-KVNEVSTPVKTSFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKQYISDLEAKAD 268 >gi|116620335|ref|YP_822491.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] gi|116223497|gb|ABJ82206.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] Length = 327 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 44/255 (17%) Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 L+ + + + ++ R F + + ++L+ D ++ Sbjct: 66 ALTAGQLEQILEAYSEAQRVYVNGPGRPQFIQQLIRVLMLSQEGKRRKLDETD------- 118 Query: 218 EKYKDNYRAPEYKRISYIL--FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 YR + IL + KKI+I + L+ + + Y + Sbjct: 119 -----RYRNQLTYSAAGILSNHTEEDIRKKIKIDDAMLEDYLKAHPLDYM---QVRARHI 170 Query: 276 VFPNQ-------------------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312 + +A E + G F +A+ + +S L Sbjct: 171 LIRTPGSSLPLEPGQKELTDAEALTKAQELRAKIVAGADFADVAKIESNDISTNTKGGDL 230 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G F + + S+ ++ F+L K G+ + + S GY + V IKP SF+E++ D+ Sbjct: 231 GFFKRGQMA-PSIEEAAFAL-KPGEISQPVKTSMGYTVIKVEEIKP--VKSFEELRPDLE 286 Query: 373 NQMRITKASEKVKED 387 +R + V + Sbjct: 287 RNLRNELTRKYVDDL 301 >gi|330891199|gb|EGH23860.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. mori str. 301020] Length = 440 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTQLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|75762890|ref|ZP_00742701.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899846|ref|ZP_04064091.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222] gi|74489622|gb|EAO53027.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859750|gb|EEN04165.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222] Length = 285 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK K Y + E + ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVKK I + + ++ + Sbjct: 232 DEVKKSIRKNLEEERIADPIFSK 254 Score = 38.0 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 56/148 (37%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKKS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + + A+ + SK +L+ E K+ Sbjct: 238 IRKNLEEERIADPIFSK--KLLQEELKK 263 >gi|221198202|ref|ZP_03571248.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia multivorans CGD2M] gi|221208305|ref|ZP_03581308.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia multivorans CGD2] gi|221171718|gb|EEE04162.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia multivorans CGD2] gi|221182134|gb|EEE14535.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia multivorans CGD2M] Length = 260 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ ++++A + +K G KF L Sbjct: 103 ENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDVAPPPFAQVKAQIAQQLVQQKLQ 247 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + + + + Q + + L + L+ Q + Sbjct: 202 QMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + A + Sbjct: 143 EQQAKDLIAKIKGGAKFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAQ 196 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 D V G + +++ + +V + + K E + Sbjct: 197 KLQKGQMTDEPVKTQFG-WHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQ 255 Query: 502 KAN 504 +A Sbjct: 256 QAK 258 >gi|187923910|ref|YP_001895552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phytofirmans PsJN] gi|187715104|gb|ACD16328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phytofirmans PsJN] Length = 259 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K S+ E+ A Y + E + ++ N+++A + +K G F L Sbjct: 103 EDFVKNNTPSDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S AD+ L K +H FG+ I V ++ Sbjct: 162 AKQFSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + ++V+ I Q++ K Sbjct: 222 RNITPPPLEQVRPQIVQQIQQEKLQ 246 Score = 41.9 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F D+ K + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQFSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + Q + ++ L + L+ + Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259 Score = 40.4 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 15/152 (9%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404 + + + T S EV ++ E + ++ ++ ++ +A G S +++ Sbjct: 102 IEDFVKNNTPSDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKAGASFEDL 161 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 +++ P G D+ + A + D V G + Sbjct: 162 AKQFS----KDPGSGKNGGDLDWSDPKAY--VPEFADAATHLQKGQMTDTPVHTQFG-WH 214 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 +++ + LE+V + + + K Sbjct: 215 IIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQ 246 >gi|170759119|ref|YP_001785376.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406108|gb|ACA54519.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 247 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316 NKE++ + E+ T ++ ++KEA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEKEANNIYEEIKDGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + ++ A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223 Query: 377 ITKASEKVKEDYKRLEEF 394 K +E+ E + L + Sbjct: 224 QEKQNEQYNEFTQNLRDK 241 >gi|220935188|ref|YP_002514087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. HL-EbGR7] gi|219996498|gb|ACL73100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp. HL-EbGR7] Length = 270 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 91/231 (39%), Gaps = 7/231 (3%) Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN--NRHVPAIADPSNAVLTQWFEKYKDNY 224 V G+ S R + ++ + + + A L Q ++ D Sbjct: 38 AMVNGVAISEADFQDFLNLQRMTRPGENLLPDEVLDEMINMELLRQAALQQGLDRDPDIQ 97 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 R E R + ++ + ++ + + ++L+AEY++ + E + ++ ++ +A Sbjct: 98 RQVERARTNLMVGALIDQRLNQDYTEEQLRAEYDRQIQAIDRTEYK-ARHILLDSEADAR 156 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E +L+ G F +LA E S LG F+ + + + ++++ ++ K Sbjct: 157 EVIAALEAGGDFQELAREHSTGPSGPMGGDLGWFTADAMV-PAFSEAVQAMEKGSYSNEP 215 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FG+ + + + + S F+ V+ +A + + + + + Sbjct: 216 VQTEFGWHVILLEDTRRSEPPPFEAVRDRVAQILDNRALQDYIGDLRTAAK 266 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 24/145 (16%) Query: 19 VVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 +L V + G +A + V V + + F + + + G + Sbjct: 12 GLLTVTLITGCGRGEAPQAEISGEAVAMVNGVAISEADFQDFLNLQR---MTRPGENLLP 68 Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 + +LD +++ L Q GL+ R P + + ++ Sbjct: 69 DE---------VLDEMINMELLRQAALQQGLD-----------RDPDIQRQVERARTNLM 108 Query: 138 VSRLAREGINEKEYIDHYTKMLSRT 162 V L + +N+ + R Sbjct: 109 VGALIDQRLNQDYTEEQLRAEYDRQ 133 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%) Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF---GKDDPLSKDHTVALPDGSYMWVQIK 469 ++L + G+++ EV +LL + G D V + M + Sbjct: 54 LNLQRMTRPGENLLPDEVLDEMINMELLRQAALQQGLDRDPDIQRQVERARTNLMVGALI 113 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAE------EVSSKANQ-LVLEYSKEGKNFRDIGK 522 + +D E++ + + + + E + S+A+ V+ + G +F+++ + Sbjct: 114 DQRLNQDYTEEQLRAEYDRQIQAIDRTEYKARHILLDSEADAREVIAALEAGGDFQELAR 173 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFS-----GPVEMVKCFPIENGLSYVVFKVT 577 +T M + +F D + FS P++ + V + Sbjct: 174 E-----HSTGPSGPMGGDLGWFTADAMVPAFSEAVQAMEKGSYSNEPVQTEFGWHVILLE 228 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 +++ + + Q+++ L I L++ + V Sbjct: 229 DTRRSEPPPFEAVRDRVAQILDNRALQDYIGDLRTAAKIEV 269 >gi|91202358|emb|CAJ75418.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 318 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 56/347 (16%), Positives = 109/347 (31%), Gaps = 91/347 (26%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V V QK+ + ++ G + LD L+ Sbjct: 44 DKDVVAIVNGQKITSNEL-------YELLLSTYG--------------NEALDVLIRRTL 82 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 ++Q G+ + KE + Sbjct: 83 INQEARKHGIS------------------------------------LTTKEVENKI--- 103 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 N L+ + + ++ N + + A L ++ Sbjct: 104 -----------------NTLVQREVNALLQTYKIE----NEADLDKELEKIGASLKEF-- 140 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 KD K L K I +S ++LQ Y+ E +Q+V Sbjct: 141 --KDKLTKRLVKEAEIELRAEKVVMKTISVSEEDLQEAYKSIYG-----EKIEAQQIVLK 193 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 ++EA+EA + L+ G ++A+ Q + S + P+ + S+ L K G+ Sbjct: 194 TKREAEEALEKLRLGADITKMAKAQSIDRASASRDGKMLPFSPEDDIGKSVAHL-KPGEL 252 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 + +I+ ++GY I ++ K F VKK++ +R K E+++ Sbjct: 253 SGIINTNYGYHIVKITGRKTGSDKKFDTVKKELEELVREKKYRERLR 299 >gi|157803578|ref|YP_001492127.1| protein export protein PrsA precursor [Rickettsia canadensis str. McKiel] gi|157784841|gb|ABV73342.1| Protein export protein PrsA precursor [Rickettsia canadensis str. McKiel] Length = 282 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 7/189 (3%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 V K+ E + ++ K I++ EY K E Sbjct: 81 EEVAKSHITASKEFQEKLENAKNQLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQ 140 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD------V 323 V ++ +QKEA+E L KG F +LAEE + S G + I + Sbjct: 141 IKVAHILVKSQKEANEIKTKLSKGGNFTKLAEELSLDKASASNGGVIGDIILNQPGQLVP 200 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 F+L K + + + FG+ I V KP + ++ K I N + + Sbjct: 201 EFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKPVPIPTKEDAKVTIDNILAAAILKQY 259 Query: 384 VKEDYKRLE 392 + + + + Sbjct: 260 ISDLEAKAD 268 >gi|51473757|ref|YP_067514.1| protein export protein PrsA precursor [Rickettsia typhi str. Wilmington] gi|51460069|gb|AAU04032.1| protein export protein PrsA precursor [Rickettsia typhi str. Wilmington] Length = 286 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K + E V ++ +QKEA+ L KG F +LAEE Sbjct: 120 KSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFNKLAEEFS 179 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G I + + F+L K + + + FG+ I V KP Sbjct: 180 LDKATASNGGVIGYIILNQSGQLVPEFENKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 238 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 239 VPIPTKKEAKVTIDNILAAEILKKYISDLEAKAD 272 >gi|294675776|ref|YP_003576391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter capsulatus SB 1003] gi|294474596|gb|ADE83984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter capsulatus SB 1003] Length = 289 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 69/168 (41%), Gaps = 5/168 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E +R +Y+ + + + ++ D+L+A Y+ K ++ ++ EA Sbjct: 102 EVERRAYLAGMLLDYTAERAVTPDKLKAAYDTKFAKAEPSREYHAAHIIVASEAEAKAIK 161 Query: 288 QSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + G F +A+ + + + LG F + A+++ ++ K G+ + Sbjct: 162 AEIDGGADFATVAKAKSQDGAAANGGDLGWFDLTAMV-PPFAEAVAAM-KAGEIKGPVQT 219 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +G+ + + + + +E ++++ +R ++V + + + Sbjct: 220 EYGWHVIKLMESRLGAAPTLEEATEELSGDLRQQAVQDRVTDTVAKAK 267 >gi|260437280|ref|ZP_05791096.1| foldase protein PrsA [Butyrivibrio crossotus DSM 2876] gi|292810590|gb|EFF69795.1| foldase protein PrsA [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 79/206 (38%), Gaps = 14/206 (6%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 + ++ + P + F + +S ++ + + E+YK+ Sbjct: 13 IDQYIATLAPEQQMYKDVPAFRDQVKS-RLEEISLFAMEGEEKHLDDT-----EEYKNTL 66 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 +R + E ++++++E++ YE +KE++ + ++ ++ + Sbjct: 67 SV--VRRDVLGQLAMAEIINDVDVTDEEVKDYYENHKEQFGRAASVSASHILVDSEDRCN 124 Query: 285 EAFQSLKKG-KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 E ++ G K F A+E S SLG+F K + D+ F+ + Sbjct: 125 EIKSEIENGGKSFEDAAKEYSTCPSGKSGGSLGTFGKGQMVK-EFEDASFN-GELNKILG 182 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQE 366 + FGY + V + + + F++ Sbjct: 183 PVKTKFGYHLIRVDEREDASVMPFEQ 208 >gi|228951646|ref|ZP_04113749.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808039|gb|EEM54555.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 269 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK K Y + E + ++ + K+ + Sbjct: 41 YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 100 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 101 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 159 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 160 SKDKGGDLGYFNSGTMA-PEFERAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 215 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 216 DEVKNSIRKNLEEERTADPVFSK 238 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 112 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 171 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 172 SGT------MAPEFERAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 221 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 222 IRKNLEEERTADPVFSK--KLLQEELKK 247 >gi|218896199|ref|YP_002444610.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842] gi|228964209|ref|ZP_04125331.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|218545279|gb|ACK97673.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842] gi|228795460|gb|EEM42945.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str. T04001] Length = 285 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK K Y + E + ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVSDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|303234820|ref|ZP_07321445.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4] gi|302493938|gb|EFL53719.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4] Length = 321 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 134/380 (35%), Gaps = 79/380 (20%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 + + + ++ ++ +G+ V +G++ + + Q I F N+ Sbjct: 4 FLAIVLAMMMVMVTACSNKPNGA--VAKIGKEYIYQKDVDKVMEDYKQYYGQDI-FNPNT 60 Query: 78 ERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 E+ + + KI+D L++ ++ ++D +E V E+ + + D Sbjct: 61 EQGKEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDK---LQKQLGG--AD 115 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F +L +E + E+ + K L + F Sbjct: 116 KFKEQLKKENMTEQALKEQIEKQLKNKKLSQQF--------------------------- 148 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQ 254 PS+ + F+K D Y +ILF + + K ++ S + + Sbjct: 149 -------EKDFKPSDKEIKDEFDKNIDTYT---QYNADHILFSGKDAKGKNLDASKLKAK 198 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310 + + AD+ ++ +K GK F ++A+ + + S Sbjct: 199 S-------------------------ELADKTYEEVKDGKNFNEVAKAKSEDPSAKQNSG 233 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + +D++ + K G+ + + FGY I +++ K++ Sbjct: 234 KLGDFLSSTMVK-EFSDALKKM-KPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQN 291 Query: 371 IANQMRITKASEKVKEDYKR 390 I + EKV++++++ Sbjct: 292 IKTAISNKIIQEKVQKEFEK 311 >gi|229161287|ref|ZP_04289272.1| Foldase protein prsA 1 [Bacillus cereus R309803] gi|228622101|gb|EEK78942.1| Foldase protein prsA 1 [Bacillus cereus R309803] Length = 256 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 86/226 (38%), Gaps = 12/226 (5%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKD----NYR-APEYKRISYILFDVHEKEKKIEI 248 Y ++ ++ + S+ + E+ KD N++ E + + + +I Sbjct: 28 YQMMLSKALLDKYKVSDEEAQKKVEEAKDKMGDNFKSTLEQLGLKNEDELKEKMKPEIAF 87 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + EK+ ++ + PE++ V ++ ++K A E + + G+ F LA++ + Sbjct: 88 EKAIKETVTEKDVKENYKPEMK-VSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTG 146 Query: 309 DISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 G + P ++ + L G + I ++GY I ++ K F Sbjct: 147 SKEQGGEIPGFAPGQTVKEFEEAAYKL-DAGQVSEPIKTTYGYHIIKATDKKE--LKPFD 203 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 EVK +I + + + + +++ L + + K Sbjct: 204 EVKGEIRKDLEEQRLQDTTGKWKQQVVTDLLKAADIKVNDKEFKDT 249 >gi|71733994|ref|YP_272934.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554547|gb|AAZ33758.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. phaseolicola 1448A] Length = 440 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 ESVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDNELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|262277260|ref|ZP_06055053.1| hypothetical protein HIMB114_0679 [alpha proteobacterium HIMB114] gi|262224363|gb|EEY74822.1| hypothetical protein HIMB114_0679 [alpha proteobacterium HIMB114] Length = 467 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 140/380 (36%), Gaps = 54/380 (14%) Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84 F WG+ D LFS + + + +KV +I S + + ++ ++ Sbjct: 21 FGAWGMGD-LFSDGNKNIIAQIKDKKVFTKEYIESARNYVNRKNKTELTDIDHSL----- 74 Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 IL++L++ ++F ED+G+ + + I F + KFS + L Sbjct: 75 ----ILNDLLAEKIYEKFAEDLGIIINDDALAYYIKSLENFKDSNGKFSRVEYEKFLLLN 130 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 IN K+ + K L + VV +F G+ ++ + + + + + + ++ + N Sbjct: 131 NINVKKLEERLKKELIKNLVVKVFTNGVSSTDYHIKKIENEFLKQVNAEFYQIGNYE--- 187 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 S+ + ++F + K + E + D +EK +++ Sbjct: 188 --KISDEKIEKYFNQNKQKFSLGELREGEVAKLDNKTLG-------------FEKENDQF 232 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI- 320 + K ++ + +I L ++ L I+ +K + Sbjct: 233 Y---------------KLLNDIENDVVNNLNYIDLKKKYNIKTSLLEKINKNGINKNRLL 277 Query: 321 -PDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMR 376 + +FSL + K + + + + + H+ NI + V + +KK+I + + Sbjct: 278 SEQKQFKEILFSLTENFKTEIIEIENVKY---LVHLKNIIKDYEVKLETGIKKEIQDILN 334 Query: 377 ITKASEKVKEDYKRLEEFLA 396 K K + ++ + Sbjct: 335 YQKNKMLAKNITESNDDDIF 354 >gi|67459334|ref|YP_246958.1| protein export protein PrsA precursor [Rickettsia felis URRWXCal2] gi|75536240|sp|Q4UKY0|PLP_RICFE RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl cis-trans isomerase plp; AltName: Full=Rotamase plp; Flags: Precursor gi|67004867|gb|AAY61793.1| Protein export protein PrsA precursor [Rickettsia felis URRWXCal2] Length = 282 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA+ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANNIKTKLSKGGNFTKLAEESS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYISDLEAKAD 268 >gi|265762561|ref|ZP_06091129.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16] gi|263255169|gb|EEZ26515.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16] Length = 712 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 92/718 (12%), Positives = 209/718 (29%), Gaps = 118/718 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G ++ ++ + ++ + V+ +++ + +G+ + I Sbjct: 61 EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119 Query: 120 -----ARSPLFHGK-DNKFSH---DVFVSRLAREGIN--EKEYIDHYT----------KM 158 + F F F++ ++ +Y+++Y K Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179 Query: 159 LSRTDV-------------------VGMFVGGMRPSNLLL-------------------- 179 L ++ + F + S++LL Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAAVPYSSIVDSTITVKESEL 239 Query: 180 -------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK---DNYRAPEY 229 + + Y E R++ YI + +T + + +Y Sbjct: 240 KDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDRAAIQQEVTDYTNQLATANGDYTTFIR 299 Query: 230 KRISYILFDVHEKEKKIEISNDELQA-----------EYE---------KNKEKYFSPEI 269 S + KK S+ + Y K K + + Sbjct: 300 STGSEYPYVDLYYTKKAFPSDVVARMDSASIGQVYGPYYNAGDNTINSFKVLSKVAAADS 359 Query: 270 RTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI- 320 Q+ + AD + ++K G F LA++ G++ + IS ++ + Sbjct: 360 VQFRQIQVYTEDAAKTKALADSIYTAIKGGADFTALAKKYGQTGESNWISSANYENAQVD 419 Query: 321 -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 ++ +I +L + + V G G +I V++ K V I + +K Sbjct: 420 GDNLKFISTINNLG-VNELSNVALGQ-GNIILQVTDKKAVKDKYKVAV---IKRAVEFSK 474 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 E + Y +F+A ++D+++ + L + G + I ++ Sbjct: 475 --ETYNKAYNEFSQFIAANPTVDKVAANAEESGYKLLERNDLYSSEHG--IGGIRGTKEA 530 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 L F + V + I R L +V ++ + K AE++ Sbjct: 531 LKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLVQVQDQLRAEIIRDKKAEKI 590 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 + + + + + S+ + S Sbjct: 591 MADMKAANATTIAQ---YTSMANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYASVSDIN 647 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 PI+ V +V + + M+ L + L + V Sbjct: 648 KLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLKGDVK 705 >gi|160947370|ref|ZP_02094537.1| hypothetical protein PEPMIC_01304 [Parvimonas micra ATCC 33270] gi|158446504|gb|EDP23499.1| hypothetical protein PEPMIC_01304 [Parvimonas micra ATCC 33270] Length = 328 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 21/196 (10%) Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 A + L E Y + + +++E+ +Y K Sbjct: 141 EKAKLTEDELKYKIEDN------------LYSTKFQTWFSENYDPTDEEIMEKY---KGS 185 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEY 319 F ++ N+++A + L+ G+KF +A E K S LG+F+K Sbjct: 186 DFDGPQINASHILVENEEDAKKVKSRLEAGEKFEDVATEVSKDPSAKKNKGVLGTFTKGV 245 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + D+ L K G+ + + FGY I ++ I + E KK I ++ + Sbjct: 246 MVK-EFYDAAVKL-KVGEISDPVKTKFGYHIIKLNEIVEDYDKFSDESKKRIKQNLKKSL 303 Query: 380 ASEKVKEDYKRLEEFL 395 SEK K +++++++ + Sbjct: 304 LSEKFKTEFEKIQKEV 319 >gi|225873725|ref|YP_002755184.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium capsulatum ATCC 51196] gi|225793223|gb|ACO33313.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium capsulatum ATCC 51196] Length = 372 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 116/370 (31%), Gaps = 78/370 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + +V + + S ++ +G +K + + + IL L++ L Sbjct: 49 ADVLATVNGKPIMKSQVDLLYEANVGKQPEK------PTKVQGDIVRLNILSRLINEEIL 102 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + L A + V + F+ D F +LA++ + L Sbjct: 103 MQRAAKMNLVASNEDVESRLNEIKA------PFTPDEFQKQLAQQHLTLDALKQQIRNQL 156 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + + + D ++ +T ++ Sbjct: 157 TEQKLFN---------------------------------KEINSKIDVTDDQITAYYNA 183 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K + P + V + + S + +K + R ++ L Sbjct: 184 HKAEFNLP-QPQFHLAQILVTNIPENAKNS-----GNLQNSKAMNDAEAKRKIQML---- 233 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK----SLSDISLGSFSKEYI-PDVSLADSIFSLAK 334 LK G F LA + S + +G S++ + D + ++ L+ Sbjct: 234 -------DDRLKNGDDFGTLASNFSENPQNSSNGGDMGFISQQELQSDPDVWGAVSKLS- 285 Query: 335 KGDFTPV--------IHGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKV 384 G+ TPV GY I + + + + + + V++ I ++ +++ Sbjct: 286 PGEITPVLPVYATQDHKKVIGYAIYKLLDKEGAGQLELSDPRVQQSIRQRLHESRSQLMQ 345 Query: 385 KEDYKRLEEF 394 + L + Sbjct: 346 NAYLEMLRDQ 355 >gi|301052807|ref|YP_003791018.1| peptidylprolyl isomerase [Bacillus anthracis CI] gi|300374976|gb|ADK03880.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI] Length = 285 Score = 98.9 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K K ++ +++ Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F + + + L K G + + GY I ++ Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249 Score = 36.9 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFH 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G A P E +++ V P+G Y +++ + +EV Sbjct: 188 SG---AMTPEFETAAYKL----KIGQISDPVQSPNG-YHIIKLTGKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + +TA+ Sbjct: 238 IRKNLEEERTAD 249 >gi|322804319|emb|CBZ01869.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065] Length = 247 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316 NKE++ + E+ T ++ +++EA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEEEANSIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + ++ A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTEAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223 Query: 377 ITKASEKVKEDYKRLEEF 394 K +++ E + L + Sbjct: 224 QEKQNQQYNEFTQNLRDK 241 >gi|229010553|ref|ZP_04167755.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048] gi|228750751|gb|EEM00575.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048] Length = 285 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK KD Y E R+ ++ + K+ + Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + Q+ EK+ + ++ PEI+ ++ N+ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIK-ASHILVSNENEAKEIKKKLDTGTSFEELAKQESQDLA 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F + + + L K + + GY I +++ K + Sbjct: 176 SKDNGGDLGYFGAGKMT-PEFEKAAYKL-KPDQISNPVKSPNGYHIIKLTDKKD--LQPY 231 Query: 365 QEVKKDIANQMRITKASE 382 +VK I + + ++ Sbjct: 232 DKVKDSIRKDLEEERLAD 249 Score = 37.3 bits (85), Expect = 8.8, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L GTS +E++++E S DL D G Sbjct: 128 DVKDHYKPEIKASHILVSNENEAKEIKKKLDTGTSFEELAKQE---SQDLASKDNGGDLG 184 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 P E+ +++ P + V P+G Y +++ + + ++V Sbjct: 185 YFGAGKMTPEFEKAAYKL----KPDQISNPVKSPNG-YHIIKLTDKKD--LQPYDKVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++KD + + A+ Sbjct: 238 IRKDLEEERLAD 249 >gi|229586913|ref|YP_002845414.1| Protein export protein prsA precursor [Rickettsia africae ESF-5] gi|228021963|gb|ACP53671.1| Protein export protein prsA precursor [Rickettsia africae ESF-5] Length = 282 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKKYIADLEAKAN 268 >gi|297182861|gb|ADI19012.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha proteobacterium HF0070_05I22] Length = 296 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 4/146 (2%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + EI+ +Q+ Y+K S E T ++ + EA L+ G F +LA+E+ Sbjct: 129 RAEITETAIQSAYDKFVADTASREQVTASHILVETEAEAKAVIAVLQDGGDFAELAKEKS 188 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S +LG+F + + + + FSL + FG+ + V + Sbjct: 189 TGPSGPNGGALGTFGRGQMV-PAFETAAFSLTIGSYSDTPVQTQFGWHVIKVDGKDITPA 247 Query: 362 VSFQEVKKDIANQMRITKASEKVKED 387 + ++ +AN + ++E Sbjct: 248 PDLEAMRAQLANNLSTQTLGRLLEEL 273 >gi|228919984|ref|ZP_04083338.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839697|gb|EEM84984.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 285 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 30/211 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + + + + EK K Y + E + Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDYKNQIKFKLAM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K I+ +++ Y+ PEI+ ++ ++ EA E L G F +LA Sbjct: 117 NEAIKKSITEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKSKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L G + + S GY + +++ Sbjct: 168 KQESQDLLSKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKED 387 K + EVK I + + ++ V Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTADPVFSK 254 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|237747325|ref|ZP_04577805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] gi|229378676|gb|EEO28767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS] Length = 259 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 KK +S+ E++AEY+ + + V+ ++ N+ +A L KG F ++A Sbjct: 104 NYLKKNPVSDKEIKAEYD-RVASLQNGQQYHVKHILVKNEADAQNIINQLNKGANFEKIA 162 Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 +E+ + G P +D++ +L KKG T + FGY I + ++ Sbjct: 163 KEKSIDQGSAARGGDLSWASPSNYIKPFSDAMIAL-KKGQITKTPVKTQFGYHIIKLVDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 + + S +VK I + K E Sbjct: 222 RKATLPSLNQVKPKIKTSLEERKWQE 247 >gi|254472475|ref|ZP_05085875.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Pseudovibrio sp. JE062] gi|211958758|gb|EEA93958.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Pseudovibrio sp. JE062] Length = 289 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 4/168 (2%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + ++ DE++A Y+ Y ++ + EA + + L+ G F +LA+E+ Sbjct: 123 QSAVTEDEVKAAYDAEYANYQGAPEINAAHILVEKEDEAKDIIKQLEGGADFAELAKEKS 182 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG F K + + F+L + FGY + + Sbjct: 183 TGPSGPNGGDLGFFGKGQMV-PEFETAAFALKPGEFTKEPVQTQFGYHVILNKEARTQPA 241 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + + + I ++ + K E ++E + + + + + K Sbjct: 242 PTLEAAEGQIRQELVLAKFREVLEELKAKNTVEIIGADADEAKAEESK 289 >gi|157828738|ref|YP_001494980.1| protein export protein prsA precursor [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801219|gb|ABV76472.1| protein export protein prsA precursor [Rickettsia rickettsii str. 'Sheila Smith'] Length = 282 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKKYIADLEAKAN 268 Score = 45.8 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENK 542 K+ K + +AN + + SK G NF + + L + + + N+ Sbjct: 138 KEQIKVAHILVKSQKEANDIKTKLSKGG-NFTKLAEELSLDKASASNGGVIGYILLNQPG 196 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602 + + F+ V V P++ + + KV K P+ K++ + ++ ++ Sbjct: 197 QLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVLEKKPVPIPTKEEAKVTIDNILAAEI 255 Query: 603 LDSVIAYLKSQYSVTV 618 L IA L+++ +V + Sbjct: 256 LKKYIADLEAKANVKI 271 >gi|307352353|ref|YP_003893404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoplanus petrolearius DSM 11571] gi|307155586|gb|ADN34966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoplanus petrolearius DSM 11571] Length = 93 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 ++ ++KEA + L G+ F +LA++ S LG F K + Sbjct: 4 KVRASHILVNSEKEAKDILAKLNSGENFEELAKKYSTCPSGRKGGDLGWFGKGMMVK-EF 62 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ FS AK GD T + FGY I ++ K Sbjct: 63 EDASFS-AKDGDVTGPVKTQFGYHIIKITGNK 93 >gi|297183681|gb|ADI19806.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha proteobacterium EB000_37G09] Length = 288 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 4/149 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 I+ D L A Y+ S E ++ P + A + L G F ++A+ Sbjct: 122 AITEDALTATYKLYIADNGSREEVKARHILVPEEATARAIIEKLTGGADFAEIAKTDSTG 181 Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG F++ + + + F L + FG+ I V + + + S Sbjct: 182 PSGPNGGDLGYFARGAMV-PTFEAAAFELEPGSFTPEPVQTQFGWHIIKVEDKRVATPPS 240 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 F+E+ + + +++ + Sbjct: 241 FEEMVPQLRQNLLNQTLGRILEKLRASAQ 269 Score = 43.4 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 5/134 (3%) Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 +VK + + EE +++A ++E G +F +I K N + Sbjct: 142 REEVKA--RHILVPEEATARA---IIEKLTGGADFAEIAKTDSTGPSGPNGGDLGYFARG 196 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602 + F P++ + + KV + +V ++ + L Q + Sbjct: 197 AMVPTFEAAAFELEPGSFTPEPVQTQFGWHIIKVEDKRVATPPSFEEMVPQLRQNLLNQT 256 Query: 603 LDSVIAYLKSQYSV 616 L ++ L++ + Sbjct: 257 LGRILEKLRASAQI 270 >gi|228913840|ref|ZP_04077465.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845779|gb|EEM90805.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 285 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K K ++ +++ Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F + + + L K G + + GY I ++ Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249 Score = 36.9 bits (84), Expect = 10.0, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFH 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G A P E +++ V P+G Y +++ + +EV Sbjct: 188 SG---AMTPEFETAAYKL----KIGQISDPVQSPNG-YHIIKLTGKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + +TA+ Sbjct: 238 IRKNLEEERTAD 249 >gi|110834907|ref|YP_693766.1| survival protein SurA [Alcanivorax borkumensis SK2] gi|122070614|sp|Q0VMV4|SURA_ALCBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|110648018|emb|CAL17494.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) [Alcanivorax borkumensis SK2] Length = 435 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 73/498 (14%), Positives = 157/498 (31%), Gaps = 86/498 (17%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 L +L + L+ + V V + S + + Q+ G + Sbjct: 12 LLGLLAMAVLMIPVWSQAKVQMLDRIVAVVNDGAIMASELDERI-NTIALQFQEKGQQLP 70 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 S L +++LD ++ Q E G++ D + +A + N S + Sbjct: 71 SPAI----LREQVLDRMILERLQLQLAERAGIKVDEASLNEALAGI----ARQNDMSLED 122 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 F + L +G + ++ + + + + + + RSV Sbjct: 123 FAATLREDGYSWTQFREQIRQDMVISRL-----------------------QQRSV---- 155 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + ++ + ++ E R+ +IL V + + +IS Sbjct: 156 ------ASRIQITDREVDRFLSSELGKQMFQEDFRLGHILIRVPSEARPQQISQA----- 204 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLG 313 + +A E + L+ G F QLA + +L LG Sbjct: 205 -----------------------RAKAKEIIERLEAGSDFQQLAIALSDGPNALEGGDLG 241 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDI 371 P + ++I KKG+F+ + G+ I + + K + V+ + Sbjct: 242 WRPAAQWPTLFAENAIN--LKKGEFSQPLRSGAGFHILKMIDRKGGAEKVVTQYHVRHVL 299 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 +T A + + + +E A E + G KG+ V Sbjct: 300 IKADALTSAEQAQQRAIRLHDEVAAGKRQFKETAAEFSDDPGSARNGGELGWVNKGEMV- 358 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 P EQ++ + P+ + V + ++++ + A D E + + Sbjct: 359 --PEFEQVML-----NTPVGELSPVFESQFGWHFLRVDDIRDA-DMSTEFRRMQATQALQ 410 Query: 492 TVKTAEEVSSKANQLVLE 509 + EE+ + + E Sbjct: 411 KRRFEEELETWVQEKRSE 428 >gi|47092734|ref|ZP_00230520.1| protein export protein [Listeria monocytogenes str. 4b H7858] gi|47018922|gb|EAL09669.1| protein export protein [Listeria monocytogenes str. 4b H7858] Length = 287 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 90/265 (33%), Gaps = 41/265 (15%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 23 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 81 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E + +S +L+ Y+ + V Sbjct: 82 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 135 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 136 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 195 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L K D + ++ ++GY + + + T A EK + Sbjct: 196 LENKDDVSGIVKSTYGYHLIQLVKKTE-----------------KGTYAKEKANVKAAYI 238 Query: 392 EEFLALGTSMDEISRREKIVSIDLP 416 E L + + + K +ID+ Sbjct: 239 ESQLTTENMIAALKKELKAANIDIK 263 >gi|299822144|ref|ZP_07054030.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601] gi|299815673|gb|EFI82911.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601] Length = 287 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 95/252 (37%), Gaps = 37/252 (14%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY----- 224 G + L D K E + + N + + S+ + + + K Y Sbjct: 32 QGDVTKDELYDALKDKDGEQ-VLQLLTFN-KILDDKYKVSDKEVDKKYNAAKAQYGDQFA 89 Query: 225 -------RAPEYKRISY--ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + ++S L + I++++ +LQ Y+ + K V + Sbjct: 90 SALQQANLTEKMYKLSLKNELLRQKATKAYIKVTDKKLQDYYKTWQPKIT------VSHI 143 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSL 332 + ++K AD+ Q LK GKKF LA++ + + G + D + + ++L Sbjct: 144 LVADKKTADKVEQELKDGKKFADLAKKYSTDTASKTKGGKLDAFGTGQMDPAFEKAAYAL 203 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA----------NQMRITKASE 382 +KGD + + FGY + + P+ +F++ K + ++ + Sbjct: 204 KEKGDISKPVKSQFGYHVIQLDE--PAKKATFEKDKAQVKKDYIDSQMNNAEVVQAALKK 261 Query: 383 KVKEDYKRLEEF 394 + K+ ++E+ Sbjct: 262 EFKDANVKVEDK 273 >gi|319943549|ref|ZP_08017831.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] gi|319743364|gb|EFV95769.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] Length = 271 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 6/149 (4%) Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + K+ +++ E++AEYEK + ++ ++ EA + + LKKG+ F Sbjct: 113 ANELKQSPVTDAEVKAEYEKLVKDSAQSGAQEYKARHILVESEDEAKQIVERLKKGEGFE 172 Query: 298 QLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ + G + LG + + ++++ L K + FGY I + Sbjct: 173 SLAKLSKDPGSGANGGDLGWNTPDTFVK-EFSEAMTKLKKGEYTVIPVKTQFGYHIIQLD 231 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEK 383 +++ + F +VK + Q+ K Sbjct: 232 DVRAAEPPPFDQVKPQLKQQLERQKIQAL 260 Score = 46.5 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 10/148 (6%) Query: 480 EEVLTDVKKDWKTVKTAEEVSSKA----------NQLVLEYSKEGKNFRDIGKNLGASLL 529 EV + +K K + KA + ++E K+G+ F + K Sbjct: 124 AEVKAEYEKLVKDSAQSGAQEYKARHILVESEDEAKQIVERLKKGEGFESLAKLSKDPGS 183 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 N + N F + + P++ Y + ++ + + D+ Sbjct: 184 GANGGDLGWNTPDTFVKEFSEAMTKLKKGEYTVIPVKTQFGYHIIQLDDVRAAEPPPFDQ 243 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617 L Q + + + ++ L++ + Sbjct: 244 VKPQLKQQLERQKIQALQEKLRASAKIQ 271 >gi|315185798|gb|EFU19564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta thermophila DSM 6578] Length = 346 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 131/399 (32%), Gaps = 78/399 (19%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIG 72 KI L V+ + LF G V R K+ +K ++ ++ +++G Sbjct: 5 KIVLGVVVMG---------LFPAFGQIIDAPVARVKLTKLEVITQRQFKADVELLEKQLG 55 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++ E K++LD + + Q E L + IA+ Sbjct: 56 RQLSLEE------RKQLLDARIGEILIYQAAEKEYLSVTQEELSQAIAQYK--QSVAPNV 107 Query: 133 SHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 S F + +G + +++ + K L A+++ ++ Sbjct: 108 SDQEFRRLIESQGGMTWEQFQEQMKKRLI---------------------AEKYLYQK-- 144 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + + PS + + + + N+ APE R S+I D S++ Sbjct: 145 ------KGQEIQNVPAPSEEEIRRVYNENISNFTAPEMVRYSHIFIDTRGL------SDE 192 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 E + Y V Q+ ++ ++++K Q + QG + + Sbjct: 193 EKKKAYN------------RVLQVKKEVDGSLEKFREAVEKYSD-DQASRYQGGDVGYLL 239 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV--------- 362 +E IFSL + V+ + GY I V+ + Sbjct: 240 RTDKQRESFLGKEFFSKIFSLPLN-KVSDVLASNVGYHIVVVTEHHEPRLLGLDDRLLPN 298 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 S Q V+ I + K E ++ ++L E L + Sbjct: 299 SKQTVRDQITALLVGQKRQEAYQKALQKLIEELRSQADV 337 >gi|94310806|ref|YP_584016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] gi|93354658|gb|ABF08747.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] Length = 264 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S++EL+ +YEK K ++ + + V ++ + +A +K G KF +A+ Q K Sbjct: 110 SDEELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKALIAKIKAGAKFEDVAKAQSKDTG 169 Query: 309 DISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSF 364 + G ++ + ++ +L KKG T + FG+ I + + + + SF Sbjct: 170 SAANGGDLDWANSSSYVPEFSAAMTNL-KKGQMTDTPVKTQFGWHIIELVDTRDAKIPSF 228 Query: 365 QEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 +EVK + M + E+ + K L++ Sbjct: 229 EEVKPQLQQMMMGDQGWQREQFQAMMKSLKDK 260 Score = 38.0 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548 + + +E +KA ++ K G F D+ K + +D + + + Sbjct: 133 VRHILVEKEADAKA---LIAKIKAGAKFEDVAKAQSKDTGSAANGGDLDWANSSSYVPEF 189 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM------NKDL 602 + + + + P++ + + ++ +++ + ++ L QMM ++ Sbjct: 190 SAAMTNLKKGQMTDTPVKTQFGWHIIELVDTRDAKIPSFEEVKPQLQQMMMGDQGWQREQ 249 Query: 603 LDSVIAYLKSQYSVT 617 +++ LK + + Sbjct: 250 FQAMMKSLKDKAKIQ 264 Score = 37.3 bits (85), Expect = 7.6, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 20/136 (14%) Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81 + F + + A + + V + + + + ++ + Sbjct: 5 VLSFSLAAVLAAGSLPAFAQNAAVVNGKPISSAKVDK--------------LIASTGQPE 50 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 + L + + L+ L Q G+ V ++ + N + VF + Sbjct: 51 TPELRDRARNMLIDRELLLQEANKRGITQRDD-VQEQLE-----QARLNVLAGAVFEDYV 104 Query: 142 AREGINEKEYIDHYTK 157 G +++E Y K Sbjct: 105 RTHGASDEELRKQYEK 120 >gi|194289564|ref|YP_002005471.1| peptidylprolyl isomerase; exported protein [Cupriavidus taiwanensis LMG 19424] gi|193223399|emb|CAQ69404.1| putative Peptidylprolyl isomerase; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 264 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 7/161 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K S+ EL+ +Y+K K ++ + + ++ + +A +K G KF Sbjct: 101 EDYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAKAIIAKIKGGAKFEDQ 160 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A+ K + G ++ + ++ L KKG T + FG+ I + + Sbjct: 161 AKAASKDPGSAANGGDLDWANSSSYVPEFSAAMTGL-KKGQMTDTPVKTQFGWHIIELVD 219 Query: 356 IKPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 ++ + SF+EVK + + + E+ + K L++ Sbjct: 220 VRDAKIPSFEEVKPQLTQMLMGDQNWQREQFQAMMKSLKDK 260 >gi|313636759|gb|EFS02412.1| foldase protein PrsA [Listeria seeligeri FSL S4-171] Length = 167 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 12/155 (7%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 E + S+ L+ Y+ + P+I TV ++ ++ +A E Q LK G+KF L Sbjct: 5 KATEANTDTSDKALKEYYKT-----WQPDI-TVSHILVADEAKAKEVEQKLKDGEKFADL 58 Query: 300 AEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+E + G + P D + + ++L KGD + + +GY I + Sbjct: 59 AKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDPVKTQYGYHIIQMDE- 117 Query: 357 KPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKR 390 P+ +F + KK + ++ +E +++ K+ Sbjct: 118 -PATKTTFDKDKKAVKESYLQSQLTTENMQKTLKK 151 >gi|238650638|ref|YP_002916490.1| protein export protein prsA precursor [Rickettsia peacockii str. Rustic] gi|238624736|gb|ACR47442.1| protein export protein prsA precursor [Rickettsia peacockii str. Rustic] Length = 282 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I+++ EY K E V ++ +QKEA+ L KG F +LAEE Sbjct: 116 KSNITDNMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANYIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYIADLEAKAN 268 >gi|281357480|ref|ZP_06243968.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis ATCC BAA-548] gi|281316083|gb|EFB00109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis ATCC BAA-548] Length = 361 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 103/370 (27%), Gaps = 93/370 (25%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99 V +G +K+ + +++Q V S A + ++ V L Sbjct: 52 DVVAQIGDKKITKQEVLK------PLLAQMPDGKVPSMMADQLDNAAPGVIKWFVDQQIL 105 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G + + K K + F L + ++Y + Sbjct: 106 EAAAAKAGFKPSKEHAQKAVKAQ---WEKVGKEDRERFAQMLQIQNKTVEQYQEEM---- 158 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 SN + + + A + A + +++++ Sbjct: 159 --------------VSNPEIQKQIALDE----------FLKTKIAEPTVTEAEMRKYYDE 194 Query: 220 YKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF- 277 K + P + P ++ Sbjct: 195 NKQKEFSTPADR------------------------------------PGTFRASHILIM 218 Query: 278 -----------PNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322 + + LKK +F LA E+ S SL SFS + + Sbjct: 219 VDDKADDAAKKAALDQINAISAELKKDPARFEALAREKSGCPSKAKGGSLDSFSDKEMV- 277 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++ L K+G+ + + FGY I ++ SF VK+ + N ++ K + Sbjct: 278 PEFQKALEGL-KEGEISAPVKTQFGYHIIRRDKLQSEKVESFDNVKETVGNILKRQKQMQ 336 Query: 383 KVKEDYKRLE 392 + +LE Sbjct: 337 AFTDYMAQLE 346 >gi|300691434|ref|YP_003752429.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum PSI07] gi|299078494|emb|CBJ51147.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia solanacearum PSI07] Length = 265 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL+ +YEK K ++ + + ++ + +A LK G F ++ Sbjct: 102 EDYVKNSPTTEDELRKQYEKIKTQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A Q K + G ++ + ++ L K + FG+ + + + Sbjct: 162 ARAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGETTQTPVKTQFGWHVIRLDDT 221 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + +F++VK + M + K + K L E Sbjct: 222 RDAKIPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREK 261 >gi|298292757|ref|YP_003694696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM 506] gi|296929268|gb|ADH90077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM 506] Length = 337 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 17/167 (10%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQS 289 EK K +++D ++ YE+ ++ E ++F + A + Sbjct: 147 EKATKAALTDDAMKKTYEEAVKQQKPEEEVHARHILFRASPDDKEASAAAEKKAQDVEAR 206 Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LKKG+ F LA+ + LG F+KE + A+ F++ K G+ + + Sbjct: 207 LKKGEDFATLAKQLTEDPSGKQDGGDLGFFAKEQMV-PEFAEVAFAM-KPGEVSKPVKTQ 264 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ + V + T +F EVK I + +E V++ + + Sbjct: 265 FGWHVIKVEEKREKPTPTFDEVKPQIEQFLAQKAQAEAVQKTREAAK 311 >gi|154148403|ref|YP_001406775.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] gi|153804412|gb|ABS51419.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381] Length = 271 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 13/163 (7%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK-- 295 EK K I+++ ++++A Y+KNK K+ P ++ + EA LK KG Sbjct: 102 EEKAKNIKVAENDIKAFYDKNKAKFMQPAQIKAGHILVKTEAEAKTIINDLKNFKGDDLV 161 Query: 296 --FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGY 348 F A ++ + +LG FS+ + D+ +L KKG+ + + FGY Sbjct: 162 KNFAITAAQKSLEPAARQTGGALGWFSEHQMVKP-FYDAAKAL-KKGEISLKPVKTQFGY 219 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + K + +F E K I N ++ K E + ++ K L Sbjct: 220 HVILKEDAKDAHQATFSEAKPTIENILKQEKLKETITKEAKDL 262 >gi|330812129|ref|YP_004356591.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380237|gb|AEA71587.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 438 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 122/394 (30%), Gaps = 83/394 (21%) Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80 L + L G + S V V V S + I+++ G Sbjct: 12 LMLGALFLGTAANAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGQPPPGV- 70 Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 LD+++L+ L+ Q E G+ + + + N S D F + Sbjct: 71 ----LDQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTI----AQRNNMSIDQFRAA 122 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 LAR+G++ ++ D + + + V + R Sbjct: 123 LARDGLSYEDARDQIRREMVISRV----------------------RQRR---------- 150 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 V S + + + E ++ IL E + +Q+ Y + Sbjct: 151 -VAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANS-----EAIQSAYRQ- 203 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSK 317 A + +Q LK+G F Q+A + +L +G Sbjct: 204 ----------------------AMDVYQQLKQGADFGQMAIAKSGSDNALEGGDMGWRKP 241 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------K 369 +P + ++A GD T G++I V + T EV Sbjct: 242 AQLP-PPFDRELSAMA-VGDITQPARTPGGFIILKVLEKRGGGTQVRDEVHVRHILIKPS 299 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +I ++ + +EK+ + + E+F L S E Sbjct: 300 EIRSEAETKRLAEKLYDRIEAGEDFAELAKSFSE 333 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 100/308 (32%), Gaps = 44/308 (14%) Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 S+++ + I + +R + +E+++ + ++ FLA ++S + +I +P Sbjct: 129 SYEDARDQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 188 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + A + Q L FG+ AL G W + + P Sbjct: 189 PESANSEAIQSAYRQAMDVYQQLKQGADFGQMAIAKSGSDNALEGGDMGWRKPAQLPPPF 248 Query: 476 DRKLE------------------------------EVLTDVKKD---WKTVKTAEEVSSK 502 DR+L +V +V K + E +K Sbjct: 249 DRELSAMAVGDITQPARTPGGFIILKVLEKRGGGTQVRDEVHVRHILIKPSEIRSEAETK 308 Query: 503 -ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561 + + + + G++F ++ K+ + ++ + QV + + Sbjct: 309 RLAEKLYDRIEAGEDFAELAKSFSEDPGSALNGGDLNWVDPNALVPEFRQVMADTPQGQL 368 Query: 562 CFPIENGLSYVVFKVTNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P ++ + V +V + + + ++ L + L + + ++ + V + Sbjct: 369 SKPFKSPYGWHVLEVLGRRATDSTTQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEI 428 Query: 619 HDNLIQRY 626 + Sbjct: 429 KLPGADQA 436 >gi|209517045|ref|ZP_03265893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] gi|209502576|gb|EEA02584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] Length = 259 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + ++ E+ A Y + E + ++ N+++A + +K G F L Sbjct: 103 EDFVKNNQPTDAEITARYNALVKDAGGQEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S AD+ L K +H FG+ I V +I Sbjct: 162 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDI 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + ++V+ I Q++ K Sbjct: 222 RAVTPPPLEQVRAQIVQQIQQEKLQ 246 Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G S ++++++ P G D+ + A + Sbjct: 142 EQQAKDLIAKIKAGASFEDLAKQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 D V G + +++ + LE+V + + + K Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQ 246 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F D+ K + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + + Q + ++ L + L+ + Sbjct: 201 QMTDTPVHTQFGWHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQAFEENLRKNARIQ 259 >gi|15892803|ref|NP_360517.1| protein export protein prsA precursor [Rickettsia conorii str. Malish 7] gi|20138841|sp|Q92H91|PLP_RICCN RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl cis-trans isomerase plp; AltName: Full=Rotamase plp; Flags: Precursor gi|15619985|gb|AAL03418.1| protein export protein prsA precursor [Rickettsia conorii str. Malish 7] Length = 282 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYIADLEAKAN 268 >gi|223940711|ref|ZP_03632550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514] gi|223890638|gb|EEF57160.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514] Length = 373 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 124/393 (31%), Gaps = 74/393 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 +V ++ S + S + G + + + KK+LD L+ Sbjct: 48 DQVIVKGKGFELKQSQLDEAVSGVKANASAR-GQEIPPAQLEM--IQKKLLDRLIQIQLF 104 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 D + K + F R +E M Sbjct: 105 KAKATD------------------ADKAEGKKEGDNRFEMIKKRAP-SEDMLAKQLKTM- 144 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 L ++ E + + + + + S+ + +++ Sbjct: 145 ----------------GLTVESLHSRLIEEATAEAV------LKSKVKISDDQVKKFYND 182 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++ PE R S+IL +++ E+S D+ +A Sbjct: 183 NPKDFEEPEQVRASHILISTSDQKTGSEMSEDQKKA-----------------------K 219 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKG 336 +K+A++ + K G+ F +LA+E + G F + + + FSL + Sbjct: 220 KKQAEDLLKRAKAGEDFGKLAKEFSEDPGSKDKGGEYIFPRGKMV-PEFEAAAFSL-QTN 277 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + ++ FGY I +S P V +V+ DI + + + + + YK L++ + Sbjct: 278 QVSDIVTTPFGYHIIKLSEKIPPHKVELAKVQDDIKGYLEKQEMEKVLPDFYKELKKE-S 336 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 +DE + + ++P K Sbjct: 337 NVQILDEKLKALEDAPDEVPNFPAPTPKQDDKA 369 >gi|161619861|ref|YP_001593748.1| chaperone surA precursor [Brucella canis ATCC 23365] gi|254704953|ref|ZP_05166781.1| chaperone surA precursor [Brucella suis bv. 3 str. 686] gi|260567571|ref|ZP_05838041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4 str. 40] gi|261755654|ref|ZP_05999363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3 str. 686] gi|161336672|gb|ABX62977.1| Chaperone surA precursor [Brucella canis ATCC 23365] gi|260157089|gb|EEW92169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4 str. 40] gi|261745407|gb|EEY33333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3 str. 686] Length = 331 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Q R E R + + + I + ++ K+ E+ R + + Sbjct: 87 QFARLPVEQRRLAAL----AALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERALHNEYF 142 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +IS+ +++A Y+K ++ ++EA+ + L+ G K LA Sbjct: 143 KNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKSEDLA 202 Query: 301 EE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + S LG FS+ + + F+L + FGY + + + + Sbjct: 203 KASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRR 261 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYK---------RLEEFLALGTSMDEISRRE 408 ++ +VK I + + + E VK+ +E+ + + E S ++ Sbjct: 262 TKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAMKDAAAAQEASGKD 321 Query: 409 KIVSIDLPL 417 D P Sbjct: 322 DASEDDAPQ 330 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/158 (8%), Positives = 53/158 (33%), Gaps = 3/158 (1%) Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 + D+++ + V+ + + + ++A +++ + G D+ K Sbjct: 154 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA---IIKKLEGGAKSEDLAKASSTDGT 210 Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 ++ + + F+ P++ Y V ++ + + D+ Sbjct: 211 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 270 Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627 + ++ ++ + L+ + D I++ + Sbjct: 271 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 308 >gi|297587540|ref|ZP_06946184.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516] gi|297574229|gb|EFH92949.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516] Length = 321 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 126/362 (34%), Gaps = 79/362 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGA 97 V +G++ + + Q I F N+E+ + + KI+D L++ Sbjct: 24 DGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDI-FNPNTEQGKEALKQIQPKIIDMLINEK 82 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 ++ ++D +E V E+ + + D F +L +E + E+ + K Sbjct: 83 IANKLMKDKKIEVSDKEVQAEVDK---LQKQLGG--ADKFKEQLKKENMTEQALKEQIEK 137 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 L + F PS+ + F Sbjct: 138 QLKNKKLSQQF----------------------------------EKDFKPSDKEIKDEF 163 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +K D Y +ILF + + K + + +L+A Sbjct: 164 DKNLDTYT---QYNADHILFSGKDDKGK-NLDDAKLKA---------------------- 197 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLA 333 + A++ ++ +K GK F ++A+ + + S LG F + +D++ + Sbjct: 198 -KSELANKTYEEVKDGKNFNEVAKAKSEDPSAKQNSGKLGDFLSSTMVK-EFSDALKKM- 254 Query: 334 KKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 K G+ + + FGY I V+ + + Q VK I+N++ K ++ ++ K Sbjct: 255 KPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQNVKTAISNKIIQEKVQKEFEKQKK 314 Query: 390 RL 391 + Sbjct: 315 DM 316 >gi|66047852|ref|YP_237693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae B728a] gi|63258559|gb|AAY39655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae B728a] gi|330970840|gb|EGH70906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 442 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 88 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L D K E + I++ + A Sbjct: 144 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 203 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 204 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 263 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A + + ++ Sbjct: 264 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQKIYDRIE 323 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + S +G + +G Sbjct: 324 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 381 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 382 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 439 Query: 407 REK 409 + Sbjct: 440 AAQ 442 >gi|86133089|ref|ZP_01051671.1| peptidylprolyl isomerase [Polaribacter sp. MED152] gi|85819952|gb|EAQ41099.1| peptidylprolyl isomerase [Polaribacter sp. MED152] Length = 544 Score = 98.5 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 56/377 (14%), Positives = 133/377 (35%), Gaps = 51/377 (13%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 ++ + F+++ + A + ++++G +K+ S F +++ L +++E Sbjct: 4 LILLLFIVF--TTASIAQKKDKVLITIGDEKIMVSEFKRVYEKNLD--------AIDNEE 53 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 A+ + +K LD ++ + DI L + + + + Sbjct: 54 AKDL---EKNLDLFINYKLKVKEAYDIKL----DTLSSYVKEM------------KTYRN 94 Query: 140 RLAREGINEKEYIDHYTKML---SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 +LA + + Y+ K ++ +V + P + Y + + + Sbjct: 95 QLAAPYMQDSAYVSVLVKDAYFRTKNEVKAKHILIRTPKVATPKDTLKAYQKIMKIRDRI 154 Query: 197 LNNRHVPAIADPSNAVLTQWFEK------YKDNYRAPEYKRISYILFDVHEKEKKIEIS- 249 L +A+ + + + K N ++ Y + K E+S Sbjct: 155 LKGEDFEKVAEEVSEDESARADAKSGRVGNKGNLGYFSAFKMVYPFENAAYTTKIDEVSM 214 Query: 250 --NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKKGKKFIQLAEE 302 K S V ++ ++ E + L+K ++F LA + Sbjct: 215 PFRTRFGYHILKVDGLRPSKGEVEVAHILITDKTAKGEEIINTVYNRLEKDEQFKMLARK 274 Query: 303 QGKSLSDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 S G + + + + FSL K+G+++ FG+ I + P Sbjct: 275 YSDDTGSKSKGGKLRRFGSGVMVQPFDEVAFSLTKEGEYSKPFRTRFGWHIVQLIKKHP- 333 Query: 360 FTVSFQEVKKDIANQMR 376 SF+E+KK++ +++R Sbjct: 334 -VKSFEEMKKELTSKIR 349 >gi|229016515|ref|ZP_04173456.1| Foldase protein prsA 2 [Bacillus cereus AH1273] gi|229022723|ref|ZP_04179247.1| Foldase protein prsA 2 [Bacillus cereus AH1272] gi|228738535|gb|EEL89007.1| Foldase protein prsA 2 [Bacillus cereus AH1272] gi|228744782|gb|EEL94843.1| Foldase protein prsA 2 [Bacillus cereus AH1273] Length = 269 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + EK K+ Y A E R+ + K+ + Sbjct: 41 YEMVAQDVITKKYKVSDDAVDKEVEKAKNQYGDQFKAALENNRLKDEKDFQDQIRFKLAL 100 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + Q+ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + Sbjct: 101 NEAIKQSVTEKDIKDHYKPEIK-ASHILVSDENEAKEIKKKLDTGASFEELAKQESQDSL 159 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG F + + + L K G + + GY I +++ K + Sbjct: 160 SKDNGGDLGYFRAGKMT-PEFEKAAYKL-KPGQISNPVKSPNGYHIIKLTDKKD--LEPY 215 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + ++ Sbjct: 216 DEVKGSIRKDLEEERIAD 233 >gi|239947926|ref|ZP_04699679.1| ppic-type ppiase domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922202|gb|EER22226.1| ppic-type ppiase domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 270 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 104 KSNITDKMFDDEYTKYVSNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEESS 163 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 164 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 222 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 223 VPIPTKEEAKITIDNILAAEVLKKYISDLEAKAD 256 >gi|86131509|ref|ZP_01050107.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134] gi|85817954|gb|EAQ39122.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134] Length = 713 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 80/589 (13%), Positives = 190/589 (32%), Gaps = 49/589 (8%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 L F+ + V S+ + F + + G ++ RA + + Sbjct: 31 LDSGGFNADKQNRVASINGVNLDREDFATKVEAQTRRA----GANSSTTRAVNA-----V 81 Query: 90 LDNLVSGATLDQFIEDIGLEADHGR----VWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 + V+ L++ E++G++ R + + F D FS +A Sbjct: 82 WEQEVNRVLLEEQYEELGIQVGKDRTQELLKQALQNDVRFQDADGFFSEAKMQEFIATLK 141 Query: 146 INEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 ++ + + + + G+ + + A + + Y+ + Sbjct: 142 DSQNPGDYQSWLVFEESLRNQEKQEIYYNLVRAGVGATLKDGEVAYKLDNNTVDIQYVQM 201 Query: 198 NNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 VP P S + ++ +KD ++ E + I ++ F + EL Sbjct: 202 LYTSVPDEEAPVSKDEIQEYVNDHKDEFQTEETRSIRFVKFVEEASLEDENALKAELSKL 261 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 + + + + F ++ + F+ + + F Sbjct: 262 RNEYTARNGATGVTETF-----------AGFDKTEEIEDFL----IDNSDVPFVDR-WFF 305 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQ 374 K+ +P + AD++F+L K G + P G + ++ V +++ P + + D Sbjct: 306 KKDLPSTN-ADTLFALGKGGVYGPYKDGRYMN-LSRVVDVRKMPDSVKT-SHILIDFQGA 362 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + T + E+ L S+ + +R K DL +F+ + Sbjct: 363 VTNTARGPIPSSATRSKEDAKKLADSLLSVLKRNKNKFEDLAK-EFSTDKSNSDNGGDLD 421 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR-DRKLEEVLTDVKKDWKTV 493 Y+ LF +D + + + + + + + + +V T VK+ + Sbjct: 422 YQNPNLFAAGYRDFIVDNNEGTIGIAETNFGYHVINIVDQKNVQDVIKVATVVKEILPSD 481 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENKFFGYDGISQ 551 KT + + + E + +F+ + G ++ +I MD + I Sbjct: 482 KTISNIYNTTQKF--ELAAAEGDFQTVATENGYAVRPVQRIRAMDETLPGEGAQRSVIQW 539 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 F + Y+V +VT + + +T ++ Sbjct: 540 AFEEDTNVGDIKRFATNDGYIVAQVTRRTPAGTERVEDVSLQVTPIIRN 588 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 59/349 (16%), Positives = 114/349 (32%), Gaps = 24/349 (6%) Query: 278 PNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKK 335 +K AD LK+ K KF LA+E S+ G P+ + F + Sbjct: 381 DAKKLADSLLSVLKRNKNKFEDLAKEFSTDKSNSDNGGDLDYQNPNLFAAGYRDFIVDNN 440 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + +FGY + ++ + K +V + + K + ++ E Sbjct: 441 EGTIGIAETNFGYHVINIVDQK--NVQDVIKVATVVKEILPSDKTISNIYNTTQKFELAA 498 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G ++ + + + + G+ ++ F +D + Sbjct: 499 AEGD-FQTVATENGYAVRPVQRIRAMDETLPGEGAQ-----RSVIQWAFEEDTNVGDIKR 552 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 A DG Y+ Q+ PA ++E+V V + +K AE + +K G Sbjct: 553 FATNDG-YIVAQVTRRTPAGTERVEDVSLQVTPIIRNMKKAEIIKNKI---------SGS 602 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVV 573 +I ++ G ++ T ++ G + + F V PIE V Sbjct: 603 TLSEIAQSQGTTVKTAGAVSMNAPTIAGAGNEPKVVGAAFGLKEGEV-SSPIEGSRGVYV 661 Query: 574 FKVTNSKVGP-VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 +V P ++ F Q + V+ LK + + Sbjct: 662 IEVVKVSEAPGLENYAAFAGQQAQKSRAAVSTKVLNALKEAADIEDNRA 710 >gi|296157842|ref|ZP_06840676.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. Ch1-1] gi|295892088|gb|EFG71872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. Ch1-1] Length = 259 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K ++ E+ A Y + E + ++ N+++A + +K G F L Sbjct: 103 EDFVKNNTPTDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + K G +S AD+ L K +H FG+ I V ++ Sbjct: 162 ARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + ++V+ I Q++ K Sbjct: 222 RNITPPPLEQVRPQIVQQIQQEKLQ 246 Score = 41.5 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F D+ + + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KAGASFEDLARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + Q + ++ L + L+ + Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G S ++++R+ P G D+ + A + Sbjct: 142 EQQAKDLIAKIKAGASFEDLARQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAT 195 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 D V G + +++ + LE+V + + + K Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQ 246 >gi|228938272|ref|ZP_04100886.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971151|ref|ZP_04131783.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977759|ref|ZP_04138144.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407] gi|228781967|gb|EEM30160.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407] gi|228788577|gb|EEM36524.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821408|gb|EEM67419.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938780|gb|AEA14676.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 289 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 91/246 (36%), Gaps = 39/246 (15%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ D + + M + + K + E++ VD Sbjct: 35 ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77 Query: 206 ADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + + Q+ ++ K E + S EK + I++ +++A++E K Sbjct: 78 ----DEMKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYK 133 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 ++ ++ +++ A + L +GK F +LA++ + LG F Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + ++ L KKG+ + + FGY I V++ +F + K DI + Sbjct: 188 GKMVK-EFEEAAQKL-KKGEVSEPVKTQFGYHIIKVTDNHADA--TFDKAKADIKKSLAQ 243 Query: 378 TKASEK 383 K + Sbjct: 244 EKTQDA 249 Score = 37.3 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%) Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 +D +++ + K +E K++++ LA G S +E++++ + G GK Sbjct: 130 EDYKKEIKASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGK 189 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 V Q L + + ++ Y +++ ++ D ++ D+KK Sbjct: 190 MVKEFEEAAQKLKKGEVSEPVKTQF--------GYHIIKVTDNH--ADATFDKAKADIKK 239 Query: 489 DWKTVKTAEE 498 KT + Sbjct: 240 SLAQEKTQDA 249 >gi|330980962|gb|EGH79065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 442 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 88 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L D K E + I++ + A Sbjct: 144 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 203 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 204 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 263 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 264 PPARTPGGFIILKLLEKRGGQGEAQMRDEVHVRHILIKPSEIRNEAETKRLAEKIYDRIQ 323 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + S +G + +G Sbjct: 324 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 381 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 382 WHVLEVLGRRSKDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 439 Query: 407 REK 409 + Sbjct: 440 AAQ 442 >gi|94264357|ref|ZP_01288149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] gi|93455251|gb|EAT05464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta proteobacterium MLMS-1] Length = 335 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 45/359 (12%), Positives = 114/359 (31%), Gaps = 74/359 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S + Q+ + +++L ++ Sbjct: 38 DRVVAEVNGEIITMSELEREMAGVEQQVLQQAPAADREQVLAEA--RQQVLSGMIDRLLA 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ V IA+ DN+ + + + +AR + + Y + Sbjct: 96 RQQADRLGIRVGEREVDEAIAQI----LADNRITMEELEAEIARHHGSMENYRRDLQTQI 151 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++ ++ + V + +++++ Sbjct: 152 LQSRLLSL---------------------------------EVRERVVIPERRIKEYYQQ 178 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + +PE +Y + + +DE + Sbjct: 179 HHQEQTSPEE---AYHIL---QIGFNWPPGDDEARE----------------------QA 210 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +++A+E + ++G F +LA + +D LG F K+ + + L + G Sbjct: 211 RRQAEEIHRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEH--IPELEPG 268 Query: 337 DFTPVIHGSFGYVIAHVSNIKPS--FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + ++ + GY + + + T S++E+K I ++ E+ + K L E Sbjct: 269 EISTILETAAGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRE 327 >gi|154250196|ref|YP_001411021.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1] gi|154154132|gb|ABS61364.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1] Length = 328 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 123/389 (31%), Gaps = 90/389 (23%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE--LGMISQKIGF 73 IFLV+L F+ + V V + + + + L I Sbjct: 6 IFLVLLISFFVF----------AQQEIVAVVNGRSITMDEWNREANVQKLLLEIQNSNET 55 Query: 74 VVNSERARSVGL------DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 GL K+LD L+ QF E + ++ D V ++ Sbjct: 56 FYQILMTTQEGLVLIEKYKLKVLDTLIRKIAFIQFAESLKVQPDPQTVKNDV-------- 107 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 +++ L + E + D+ + L + Q + F Sbjct: 108 -----DNEI-KKMLVDLKMTETQLNDYLMQ-------------------LGMGQLEDFRQ 142 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + L+ +V ++ K Sbjct: 143 KLYLQRTYSLSLANVYT-----------YYLKN-------------------------AT 166 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S +E++A YEKNK KY P + ++ AD Q + K +++++ S Sbjct: 167 VSEEEIKAYYEKNKAKYTVPTQYDLLIFKAKDKAMADSIRQDVAKNISVEEISKKYNLSP 226 Query: 308 SDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 G ++ + + I + KG P + Y I V ++KP S E Sbjct: 227 H--VNGLVTQGDMEKIPQNLWVIITSVSKGTILPAQLINNEYYIIRVRDVKPGSQKSLDE 284 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFL 395 VK++I ++ TK E + K E+FL Sbjct: 285 VKEEIKKELVSTKQKEVKDKVAKDFEDFL 313 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 24/163 (14%) Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + I KA +K + + +A S++EIS++ + LV ++ I Sbjct: 190 DLLIFKAKDKA--MADSIRQDVAKNISVEEISKKYNLSPHVNGLVTQG-------DMEKI 240 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P ++ K L L + Y +++++ P + L+EV ++KK+ + Sbjct: 241 PQNLWVIITSVSKGTIL----PAQLINNEYYIIRVRDVKPGSQKSLDEVKEEIKKELVST 296 Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 K E K K+F D K + +QI + Sbjct: 297 KQKEV-----------KDKVAKDFEDFLKKSKIEIKYKSQIAK 328 >gi|296272150|ref|YP_003654781.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter nitrofigilis DSM 7299] gi|296096325|gb|ADG92275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter nitrofigilis DSM 7299] Length = 269 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK----KGK 294 + + K++ ++ E ++ Y+KNKEK+ +P+ ++ +KEA++ L K Sbjct: 102 MQNEYAKVKATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKLNIAKNKKG 161 Query: 295 KFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F +LA++ + G K + + +L K + FGY + + Sbjct: 162 SFEELAKKFSIGPTKTKGGYLGKFQAKQMVPEFSKAALALKKGEYTKKPVKTQFGYHVIY 221 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + N + S + F +VK +IA + K + +KE+ ++L+ Sbjct: 222 LENKEVSQILPFDKVKANIAKMIVQEKYGKMIKEEVEKLK 261 >gi|289676168|ref|ZP_06497058.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae FF5] gi|330938460|gb|EGH42067.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. pisi str. 1704B] Length = 440 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L D K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 202 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGEAQMRDEVHVRHILIKPSEIRNEAETKRLAEKIYDRIQ 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + S +G + +G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSKDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|206968099|ref|ZP_03229055.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134] gi|229177678|ref|ZP_04305055.1| Foldase protein prsA 2 [Bacillus cereus 172560W] gi|206737019|gb|EDZ54166.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134] gi|228605868|gb|EEK63312.1| Foldase protein prsA 2 [Bacillus cereus 172560W] Length = 285 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 80/203 (39%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + + + + EK K Y + E + ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 EVK I + + ++ V Sbjct: 232 DEVKNSIRKNLEEERTADPVFSK 254 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +EV Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|255020576|ref|ZP_05292639.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Acidithiobacillus caldus ATCC 51756] gi|254969961|gb|EET27460.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Acidithiobacillus caldus ATCC 51756] Length = 479 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 55/424 (12%), Positives = 109/424 (25%), Gaps = 78/424 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ + E L +++L ++ Sbjct: 74 DKVVAVVNDDIITSLQLAQRVAAIRARLQQQDPNALPPEEV----LRRQVLQQMILQDVE 129 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G++ D + I + + + Sbjct: 130 LQIAKRAGIKVDQATLDQAIGNIA------------------RANNLTPDQLRQALAQQ- 170 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI-VLNNRHVPAIADPSNAVLTQWFE 218 +F + R + L + V + + + Sbjct: 171 -------------------GQSWTQFEDDLRDRILVDRLTQQEVESRIHIGPDEVKTFAR 211 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K+ + +I + I Sbjct: 212 QLKELGGVSFDLQQIFIPLPDNPTPDAIS------------------------------A 241 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +++A E L+ G F +LA E +L LG +P +++ ++ SL K Sbjct: 242 ARRQAQEIRDRLEAGASFSRLAAEVSSSRDALQGGRLGWVKAAELP-PAISQTLMSL-KP 299 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ +PVI G G+ I V + K + I + ++ + + +E L Sbjct: 300 GEISPVIPGPTGFHIFKVLDTKHEEPTVTEVKAAAIVLRASNGLQLQEAEARAQDIETAL 359 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 GT E++RR G GK + L D Sbjct: 360 QGGTRFSELARRYSQDPSTAAAGGELGWVAPGKLPDELERTLLALQPGAVSSPVRVGDAI 419 Query: 456 VALP 459 L Sbjct: 420 YILQ 423 >gi|148880128|sp|Q68WG0|PLP_RICTY RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl cis-trans isomerase plp; AltName: Full=Rotamase plp; Flags: Precursor Length = 282 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K + E V ++ +QKEA+ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFNKLAEEFS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G I + + F+L K + + + FG+ I V KP Sbjct: 176 LDKATASNGGVIGYIILNQSGQLVPEFENKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 235 VPIPTKKEAKVTIDNILAAEILKKYISDLEAKAD 268 >gi|291297351|ref|YP_003508749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber DSM 1279] gi|290472310|gb|ADD29729.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber DSM 1279] Length = 620 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 66/450 (14%), Positives = 137/450 (30%), Gaps = 106/450 (23%) Query: 13 VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 V + VL + F++ + S G + +V + V ++ +L Sbjct: 8 VVAVIFGVLALAFVVGSVLLFTPQGQRSTQGKTE-FTVNGRPV--------YELDLARAQ 58 Query: 69 QKIGFVVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 Q + + + L + +D ++ L Q + G + E+ G Sbjct: 59 QSDPILSTNPQGLLKNLAEVNFVDRMIVTTALLQDTAR--VRVSSGELKKELDTIKERFG 116 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 K +D F L + G + + + + V Sbjct: 117 LQKKEDYDRF---LTQVGYTDSQLRNELRDQIRINKRV---------------------- 151 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + A+P+ + +FE +D Y+ E Sbjct: 152 ------------EEIQKKAEPTEEEMRLYFELNRDQYKNEERV----------------- 182 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK- 305 Q+V ++ AD+ + + G F +A+ K Sbjct: 183 -----------------------QARQIVVDDKTTADKIYAEVTAPGADFAAIAKANSKL 219 Query: 306 -SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + +LG+ + + P ++A+++F L + G + I + I V Sbjct: 220 NAEQGGALGAQAGQSEPGPVTRVVFPNAVAEAVFKL-RDGQISKPIEAGGRFYIVKVEKY 278 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 P+ V F+EVK + + K ++ + L + + + E V + Sbjct: 279 LPAGDVKFEEVKDRVKEDAKRIKGQGALEAYIEELRAKANVKFAEGSTYKFENPVVAKVG 338 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + +V + V A P QLL + G+ Sbjct: 339 DTEIKLTEVT-QSVFANPQVPQLLQQGLGE 367 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 78/532 (14%), Positives = 165/532 (31%), Gaps = 85/532 (15%) Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 + E ++D + LD K + + DY Sbjct: 74 NLAEVNFVDRMIVTTALLQDTARVRVSSGELKKELDTIKERFGLQKKEDY-----DRFLT 128 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 +++ L E + I V E +KK E + +E++ +E N+++Y Sbjct: 129 QVGYTDSQLRN------------ELRDQIRINKRVEEIQKKAEPTEEEMRLYFELNRDQY 176 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK--SLSDISLGSFSKEYIP 321 + E Q+V ++ AD+ + + G F +A+ K + +LG+ + + P Sbjct: 177 KNEERVQARQIVVDDKTTADKIYAEVTAPGADFAAIAKANSKLNAEQGGALGAQAGQSEP 236 Query: 322 DV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 ++A+++F L + G + I + I V P+ V F+EVK + Sbjct: 237 GPVTRVVFPNAVAEAVFKL-RDGQISKPIEAGGRFYIVKVEKYLPAGDVKFEEVKDRVKE 295 Query: 374 QMRITKASEKVKEDYKRLEEF----LALGTSMD-EISRREKIVSIDLPLVDFAGKDVKGK 428 + K ++ + L A G++ E K+ ++ L + Sbjct: 296 DAKRIKGQGALEAYIEELRAKANVKFAEGSTYKFENPVVAKVGDTEIKLTEVTQSVFANP 355 Query: 429 EVAAIP-----------YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 +V + + Q L ++ ++ T+ G + + + + Sbjct: 356 QVPQLLQQGLGELAVQFFMPQTLEQLISREAAYQFAQTL----GQPFFGSKSDVVAQAQQ 411 Query: 478 --------KLEEVLT-----------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 EV + V +E +KA+ K GK Sbjct: 412 WKTRDITVTEAEVRRYYDANLANFTIPASAKVQAVNFKKEDKAKADAFRAAALKGGK-LE 470 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVKCFPIENGLSY 571 D+ K ++ +N VF GP+ V S+ Sbjct: 471 DLAKANNGTVQDYGVVN-----PGTMPPVPNRLVFLTRGTFPKGPLGEVSEVVKLEDGSF 525 Query: 572 VVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 V V + K + +++ + + + ++ V + Sbjct: 526 QVLIVNDRKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEEVRKAAKVENN 577 Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 16/208 (7%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKKFIQLAE 301 + I ++ E++ Y+ N + P V+ + F + +A KG K LA+ Sbjct: 415 RDITVTEAEVRRYYDANLANFTIPASAKVQAVNFKKEDKAKADAFRAAALKGGKLEDLAK 474 Query: 302 EQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFG-YVIAHVSN 355 ++ D G + +P V L F G+ + V+ G + + V++ Sbjct: 475 ANNGTVQD--YGVVNPGTMPPVPNRLVFLTRGTFPKGPLGEVSEVVKLEDGSFQVLIVND 532 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI------SRREK 409 K F+EV+++ Q+ ++ +E ++ + + + + ++ ++ K Sbjct: 533 RKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEEVRKAAKVENNLQKVLTALTPKEEPK 592 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +G + + P Sbjct: 593 QEQPKTNESQPSGNSSQPGTNQSTPANR 620 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 99/295 (33%), Gaps = 29/295 (9%) Query: 352 HVSNIKPSFTVSFQEVK-------KDIANQMRITKASEKVKEDYKR---LEEFLALGTSM 401 V I+ + +E++ N+ R+ V + E A G Sbjct: 150 RVEEIQKKAEPTEEEMRLYFELNRDQYKNEERVQARQIVVDDKTTADKIYAEVTAPGADF 209 Query: 402 DEISRRE-KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 I++ K+ + + + V + + + VF D A Sbjct: 210 AAIAKANSKLNAEQGGALGAQAGQSEPGPVTRVVFPNAVAEAVFKLRDGQISKPIEA--G 267 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 G + V++++ +PA D K EEV VK+D K +K + + +L + ++ Sbjct: 268 GRFYIVKVEKYLPAGDVKFEEVKDRVKEDAKRIKGQGALEAYIEELRAK--------ANV 319 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580 G++ N + + + + VF+ P ++ GL + + + Sbjct: 320 KFAEGSTYKFENPVVAKVGDTEIKLTEVTQSVFANPQ---VPQLLQQGLGELAVQFFMPQ 376 Query: 581 VGPVQEKDKFISYLTQMMNKDLLDS---VIAYLK--SQYSVTVHDNLIQRYLDGE 630 + Q + + S V+A + +TV + ++RY D Sbjct: 377 TLEQLISREAAYQFAQTLGQPFFGSKSDVVAQAQQWKTRDITVTEAEVRRYYDAN 431 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 11/157 (7%) Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK-DHTV 456 G ++++++ D +V + +P + L R PL + V Sbjct: 466 GGKLEDLAKANNGTVQDYGVV-------NPGTMPPVPNRLVFLTRGTFPKGPLGEVSEVV 518 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 L DGS+ + + + R EEV + ++ + AE + V + +K N Sbjct: 519 KLEDGSFQVLIVNDRKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEE-VRKAAKVENN 577 Query: 517 FRDIGKNL--GASLLTTNQINRMDNENKFFGYDGISQ 551 + + L + G +Q Sbjct: 578 LQKVLTALTPKEEPKQEQPKTNESQPSGNSSQPGTNQ 614 >gi|328465489|gb|EGF36718.1| protein secretion PrsA (post-translocation molecular chaperone) [Listeria monocytogenes 1816] Length = 261 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 27/238 (11%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E + +S +L+ Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT--VSFQEVKKD-IANQMRITKASEKVKE 386 L K D + ++ ++GY + + T VK I +Q+ +K+ Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMIAALKK 260 >gi|169830779|ref|YP_001716761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Desulforudis audaxviator MP104C] gi|169637623|gb|ACA59129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Desulforudis audaxviator MP104C] Length = 297 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 40/360 (11%), Positives = 87/360 (24%), Gaps = 106/360 (29%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 TV V + + + ++G ++ L L+ Sbjct: 32 GRSGDVETVAVVNGEPISRDEL-------YAEMYAQMG--------------QQTLQELI 70 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 + + Q G+E V + + S + F L G+ +K+ Sbjct: 71 TRKLIIQEGRAQGVEISDADVQTRLDEV----IESGFSSREEFQEALKAYGLEQKDLEQQ 126 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 L V+G A + Sbjct: 127 IRVQLIVEGVLG-------------------------------------KQIQLDEAEVK 149 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++FE + + PE Sbjct: 150 EYFEANRKRFGQPESLE----------------------------------------ARH 169 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFS 331 +V ++EA+ L G F LA E+ + + ++F Sbjct: 170 IVLKTREEAESVRSELVSGADFAVLAREKSVDPLTAGGGGGLGTIRYGELIPAWQKALFG 229 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + G V+ G+ + + P+ F +V+ + ++ + ++ L Sbjct: 230 M-ETGLVNEVLETPSGFHVVEILEKHPAVEPVFADVEAKVRRELTEKEITQLYPAWVDSL 288 >gi|157964715|ref|YP_001499539.1| protein export protein prsA precursor [Rickettsia massiliae MTU5] gi|157844491|gb|ABV84992.1| Protein export protein prsA precursor [Rickettsia massiliae MTU5] Length = 282 Score = 98.1 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYSKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVVGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYISDLEAKAD 268 >gi|34581487|ref|ZP_00142967.1| protein export protein prsA precursor [Rickettsia sibirica 246] gi|28262872|gb|EAA26376.1| protein export protein prsA precursor [Rickettsia sibirica 246] Length = 282 Score = 97.8 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ + V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHVIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAELLKKYIADLEAKAN 268 >gi|165933466|ref|YP_001650255.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str. Iowa] gi|165908553|gb|ABY72849.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str. Iowa] Length = 282 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVVNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G + + F+L K + + + FG+ I V KP Sbjct: 176 LDKASASNGGVIGYILLNQPGQLVPEFEKKAFAL-KVNEVSTPVKTDFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEILKKYIADLEAKAN 268 Score = 45.8 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 6/136 (4%) Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENK 542 K+ K + +AN + + SK G NF + + L + + + N+ Sbjct: 138 KEQIKVAHILVKSQKEANDIKTKLSKGG-NFTKLAEELSLDKASASNGGVIGYILLNQPG 196 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602 + + F+ V V P++ + + KV K P+ K++ + ++ ++ Sbjct: 197 QLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVLEKKPVPIPTKEEAKVTIDNILAAEI 255 Query: 603 LDSVIAYLKSQYSVTV 618 L IA L+++ +V + Sbjct: 256 LKKYIADLEAKANVKI 271 >gi|228906899|ref|ZP_04070766.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200] gi|228852647|gb|EEM97434.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200] Length = 285 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 81/203 (39%), Gaps = 14/203 (6%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-----RAPEYKRISYILFDVHEKEKKIEI 248 Y ++ + + + + EK K Y + E R+ ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNRLKDEEDFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E L G F +LA+++ + L Sbjct: 117 NEAIKKSITEKDVKDHYKPEIK-ASHILVSDENEAKEIKNKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F+ + + + L G + + S GY + +++ K + Sbjct: 176 SKDKGGDLGYFNSGTMA-PEFETAAYKL-NVGQISNPVKSSNGYHVIKLTDKKD--LKPY 231 Query: 365 QEVKKDIANQMRITKASEKVKED 387 E+K I + + ++ V Sbjct: 232 DEIKNSIRKNLEEERTADPVFSK 254 Score = 39.6 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K ++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKNKLDAGASFEELAKQESQDLLSKDKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G + + + + + Y +++ + + +E+ Sbjct: 188 SGT------MAPEFETAAYKLNVGQISNPVKS--SNGYHVIKLTDKKD--LKPYDEIKNS 237 Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKE 513 ++K+ + +TA+ V SK +L+ E K+ Sbjct: 238 IRKNLEEERTADPVFSK--KLLQEELKK 263 >gi|168185280|ref|ZP_02619944.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf] gi|237793360|ref|YP_002860912.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4 str. 657] gi|182671671|gb|EDT83632.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf] gi|229264108|gb|ACQ55141.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4 str. 657] Length = 247 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316 NKE++ + E+ T ++ +++EA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + ++ A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223 Query: 377 ITKASEKVKEDYKRLEEF 394 K +++ E + L + Sbjct: 224 QEKQNQQYNEFTQNLRDK 241 >gi|148378054|ref|YP_001252595.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. ATCC 3502] gi|153931321|ref|YP_001382453.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936847|ref|YP_001386006.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. Hall] gi|153940453|ref|YP_001389411.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F str. Langeland] gi|168181156|ref|ZP_02615820.1| peptidil-prolyl isomerase family protein [Clostridium botulinum NCTC 2916] gi|170757604|ref|YP_001779674.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1 str. Okra] gi|226947272|ref|YP_002802363.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2 str. Kyoto] gi|148287538|emb|CAL81602.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum A str. ATCC 3502] gi|152927365|gb|ABS32865.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932761|gb|ABS38260.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A str. Hall] gi|152936349|gb|ABS41847.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F str. Langeland] gi|169122816|gb|ACA46652.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1 str. Okra] gi|182668005|gb|EDT79984.1| peptidil-prolyl isomerase family protein [Clostridium botulinum NCTC 2916] gi|226843846|gb|ACO86512.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2 str. Kyoto] gi|295317521|gb|ADF97898.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F str. 230613] Length = 247 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%) Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFS 316 NKE++ + E+ T ++ +++EA+ ++ +K G F + AE+ K S SLG+F+ Sbjct: 106 NKEEFRTQELITARHILVDSEEEANNIYEEIKNGLDFSEAAEKYSKCPSKAQGGSLGTFT 165 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + ++ A+ T I FGY + V NIK S F EVK I N++ Sbjct: 166 RGQMV-PEFEKAVLE-AEVDKVTQAIKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLL 223 Query: 377 ITKASEKVKEDYKRLEEF 394 K +++ E + L + Sbjct: 224 QEKQNQQYNEFTQNLRDK 241 >gi|295676529|ref|YP_003605053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] gi|295436372|gb|ADG15542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] Length = 259 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + ++ E+ A Y + E + ++ N+++A + +K G F L Sbjct: 103 EDFVKNNQPTDAEVTARYNALVKDAGGKEF-HLHHILVDNEQQAKDLIAKIKAGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + K G +S AD+ L K +H FG+ I V +I Sbjct: 162 ARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAAAHLQKGQMTDTPVHTQFGWHIIRVDDI 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + ++V+ I Q++ K Sbjct: 222 RAVTPPPLEQVRAQIVQQIQQEKLQ 246 Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F D+ + + +D ++ K + + Sbjct: 142 EQQAKDLIAKI-KAGASFEDLARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAAAHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + + Q + ++ L + L+ + Sbjct: 201 QMTDTPVHTQFGWHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQAFEENLRKNAKIQ 259 Score = 41.9 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 7/112 (6%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G S ++++R+ P G D+ + A + Sbjct: 142 EQQAKDLIAKIKAGASFEDLARQYS----KDPGSGKNGGDLDWSDPKAY--VPEFADAAA 195 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 D V G + +++ + LE+V + + + K Sbjct: 196 HLQKGQMTDTPVHTQFG-WHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQ 246 >gi|30261271|ref|NP_843648.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames] gi|47526434|ref|YP_017783.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184104|ref|YP_027356.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne] gi|65318541|ref|ZP_00391500.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus anthracis str. A2012] gi|165873055|ref|ZP_02217675.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488] gi|167636140|ref|ZP_02394445.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442] gi|167641190|ref|ZP_02399444.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193] gi|170686825|ref|ZP_02878045.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465] gi|170709056|ref|ZP_02899485.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389] gi|177654451|ref|ZP_02936348.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174] gi|190566537|ref|ZP_03019454.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I] gi|227815990|ref|YP_002815999.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684] gi|229603142|ref|YP_002865693.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248] gi|254682666|ref|ZP_05146527.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066] gi|254725460|ref|ZP_05187242.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055] gi|254734085|ref|ZP_05191798.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North America USA6153] gi|254740272|ref|ZP_05197964.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B] gi|254753611|ref|ZP_05205647.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum] gi|254758708|ref|ZP_05210735.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94] gi|46396833|sp|Q81TU1|PRSA2_BACAN RecName: Full=Foldase protein prsA 2; Flags: Precursor gi|30254885|gb|AAP25134.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. Ames] gi|47501582|gb|AAT30258.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames Ancestor'] gi|49178031|gb|AAT53407.1| protein export protein prsA [Bacillus anthracis str. Sterne] gi|164711210|gb|EDR16767.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488] gi|167510831|gb|EDR86223.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193] gi|167528494|gb|EDR91259.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442] gi|170126011|gb|EDS94909.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389] gi|170669348|gb|EDT20091.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465] gi|172080735|gb|EDT65817.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174] gi|190562089|gb|EDV16057.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I] gi|227006723|gb|ACP16466.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684] gi|229267550|gb|ACQ49187.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248] Length = 285 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S+ + + +K K Y + + Sbjct: 57 YEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADFKNQIKFKLSM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 K K ++ +++ Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NKAIKQSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDTGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F + + + L K G + + GY I ++ Sbjct: 168 KQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLTGK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 226 KD--LKPYDEVKNSIRKNLEEERTAD 249 Score = 36.9 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKDHYKPEIKASHILVSDENEAKEIKKKLDTGASFEELAKQESQDLLSKEKGGDLGYFH 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G A P E +++ V P+G Y +++ + +EV Sbjct: 188 SG---AMTPEFETAAYKL----KIGQISDPVQSPNG-YHIIKLTGKKD--LKPYDEVKNS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + +TA+ Sbjct: 238 IRKNLEEERTAD 249 >gi|169825702|ref|YP_001695860.1| hypothetical protein Bsph_0092 [Lysinibacillus sphaericus C3-41] gi|168990190|gb|ACA37730.1| Hypothetical yacD protein [Lysinibacillus sphaericus C3-41] Length = 323 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 48/382 (12%), Positives = 113/382 (29%), Gaps = 117/382 (30%) Query: 6 RKASRTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 R ++ +A I +++L + F+ W + + + V ++ + ++ + ++ Sbjct: 24 RLKTKPALAVIAVLLLGNILWFIGWVIPNKGQEIGSDEQVAAIDGDVITRQEWMIAMEER 83 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 G K+ L +LV+ +++ + ++ + E+A Sbjct: 84 YG---------------------KETLQSLVNETVMEKAAKTYKIKVTDQEIDLELALM- 121 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 +KF A + + ++ L V+ Sbjct: 122 --RSAQDKFDT-------AMQNLTAEQLRQKIRSQLILDKVL------------------ 154 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + + +++E+ + Y R ++ Sbjct: 155 -------------------TKDVVINEESIEKYYEENQGLYNTKTSYRTNF--------- 186 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + +K ADEA LK G F LA E Sbjct: 187 -------------------------------IEVDAKKAADEALGELKNGSDFSVLAREI 215 Query: 304 GKSLSDISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357 + SLG + D ++ +++ S K + + G Y I V I Sbjct: 216 SLDSASASLGGDVGFLTENQENVDPAIINAVKS-TKVNEVSKAFKLDNGHYGIVQVQEIL 274 Query: 358 PSFTVSFQEVKKDIANQMRITK 379 + ++ +VK+ I ++ + + Sbjct: 275 EGQSFTYDDVKEHIERELALEQ 296 >gi|228951513|ref|ZP_04113619.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808220|gb|EEM54733.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 290 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 21/224 (9%) Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK----YKDN 223 F M+ S E + + ++ V + + Q+ ++ K Sbjct: 40 FYEQMKNSQTGKQTLNNMVMEKVLIKNYKVEDKDVDKKF---DEMKKQYGDQFDTLMKQQ 96 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 E + S EK + I++ +L+A++E K++ ++ +++ A Sbjct: 97 GIKEETIKNSVRAQLAQEKAVEQSITDKDLKAKFEDYKKEI------KASHILVKDEETA 150 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + L +GK F +LA++ + LG F + ++ L KKG+ + Sbjct: 151 KKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEEAAQKL-KKGEVS 208 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + FGY I V++ +F + K DI + K + Sbjct: 209 EPVKTQFGYHIIKVTDNHADA--TFDKAKADIKKALVQEKTQDA 250 Score = 38.0 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%) Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 +D +++ + K +E K++++ LA G S +E++++ + G GK Sbjct: 131 EDYKKEIKASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGK 190 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 V Q L + + ++ Y +++ ++ D ++ D+KK Sbjct: 191 MVKEFEEAAQKLKKGEVSEPVKTQF--------GYHIIKVTDNH--ADATFDKAKADIKK 240 Query: 489 DWKTVKTAEE 498 KT + Sbjct: 241 ALVQEKTQDA 250 >gi|217964409|ref|YP_002350087.1| foldase protein PrsA [Listeria monocytogenes HCC23] gi|217333679|gb|ACK39473.1| foldase protein PrsA [Listeria monocytogenes HCC23] gi|307571026|emb|CAR84205.1| protein export protein (post-translocation molecular chaperone) [Listeria monocytogenes L99] Length = 295 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 27/258 (10%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY---- 224 + L +A + + N V + + + + + ++KY++ Y Sbjct: 30 TDAGSVTQDELYEAMKTTYGNEVVQQLTFK-KILEDKYTVTEKEVNAEYKKYEEQYGDSF 88 Query: 225 ----------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + + Y L E + +S +L+ Y+ + V Sbjct: 89 ESTLSSNNLTKTSFKENLEYNLLVQKATEANMNLSESKLKTYYKTWEPDIT------VRH 142 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFS 331 ++ ++ A E LK G+KF LA+E + + G + P D + + ++ Sbjct: 143 ILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 202 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDY 388 L K D + ++ ++GY + + T + ++ I +Q+ + +K++ Sbjct: 203 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAALKKEL 262 Query: 389 KRLEEFLALGTSMDEISR 406 K + D + Sbjct: 263 KAANIDIKDSDLKDAFAD 280 >gi|320106474|ref|YP_004182064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] gi|319924995|gb|ADV82070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] Length = 275 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 20/229 (8%) Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----TQWFEKYKDNYRAPEYK-----R 231 + R E R + ++L V A S+ + + + P Sbjct: 39 RVLRQMAEQRILSAVLLRQLAVGAGITASDEEVDTRRRAQWGTSSASVCGPGVYLAIRDN 98 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKE 282 + + ++ S +E++ YE+++ ++ PE V ++ Q + Sbjct: 99 LLIEKYSQWLTRHEMRPSREEVERYYEQHRVEFHQPERIEVAHIICNIDRPEDRAVAQSK 158 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 +A L GK F ++AE+ + LG ++ + + + +F+L K+ + + + Sbjct: 159 MQQAEMELNTGKPFQKVAEKYSDCGGKVPLGWITRGVMVE-EFDEVVFTL-KRNERSEIF 216 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FG IA V NIKP+ QEVK IA +M + + V+ Sbjct: 217 SSRFGLHIATVLNIKPAGYEPLQEVKLSIAKRMLEERRQKTVRLAVDEA 265 >gi|121607668|ref|YP_995475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] gi|121552308|gb|ABM56457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] Length = 374 Score = 97.8 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 15/171 (8%) Query: 239 VHEKEKKIEISNDELQAE----YEKNKEKYFS-PEIRTVEQLVFPNQKEADEAF-----Q 288 + + +K + + L A Y +K + PE V L+ + A Sbjct: 184 LADFDKSHQPDDAALLAYAQSTYRAMDDKQLTAPERIRVRHLLVKEKSPEKRALIEQWLA 243 Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 K GK F QLA++ + LG + ++ +L + GD + V+ Sbjct: 244 EAKAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGSTV-PPFEQALKALKEPGDLSEVVET 302 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 SFGY I + +P+ F E++ + Q R E +D +RL+E + Sbjct: 303 SFGYHIIRLEERRPAGLRGFDEMRDPLRLQARNALLREARAKDAQRLQEEM 353 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 4/138 (2%) Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 ++R EK E +E++LA + + ++ K S D G + + Sbjct: 219 RIRVRHLLVKEKSPEKRALIEQWLAEAKAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGS 278 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 +P EQ L + +P V G Y ++++E PA R +E+ ++ + Sbjct: 279 TVPPFEQALKAL---KEPGDLSEVVETSFG-YHIIRLEERRPAGLRGFDEMRDPLRLQAR 334 Query: 492 TVKTAEEVSSKANQLVLE 509 E + A +L E Sbjct: 335 NALLREARAKDAQRLQEE 352 >gi|309781979|ref|ZP_07676709.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp. 5_7_47FAA] gi|308919045|gb|EFP64712.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp. 5_7_47FAA] Length = 265 Score = 97.8 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 5/160 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K + DEL +Y+K K ++ + + ++ + +A LK G KF + Sbjct: 102 EDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEGDAKAIIAKLKAGAKFEDI 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A+ Q K + G P + + + + KKG T + FG+ + + + Sbjct: 162 AKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDT 221 Query: 357 KPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRLEEF 394 + + S+++VK + M + K + K L E Sbjct: 222 RDAKIPSYEDVKPQLLEMMMGDQNWQRSKFQAMLKDLREK 261 >gi|300775367|ref|ZP_07085229.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC 35910] gi|300506107|gb|EFK37243.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC 35910] Length = 717 Score = 97.8 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 91/642 (14%), Positives = 200/642 (31%), Gaps = 77/642 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR S+ W+ + + + FL+ S + V +K+ F Sbjct: 4 LGQIR--SKPWLLMGVIALALLAFLVNPDSIDKVFGKNPDVLGKVNGEKITREEF----N 57 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG------RV 115 +L ++ Q+ + GL+++ LV + Q E +G E + Sbjct: 58 DQLFVLQQQAEQQGRPK----NGLEEQAWQLLVQSKLIKQQFEKLGFEMTDDYFWNQIQY 113 Query: 116 WGEIARSPLFHGKDNKFS-HDVFVSRLAREGINEKEYID------HYTKMLSRTDVVGMF 168 A++ F + F ++ + N + Y L V Sbjct: 114 DQMFAQNQQFFDEKGNFKTQELKKEIETLQNTNPQGYAQWLKTRKTIEYRLMARQVFTNL 173 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV--PAIADPSNAVLTQWFEKYKDNYRA 226 G+ ++ + + +D++ ++ + + L + +K+ ++A Sbjct: 174 SAGITTGKKEAEELMKQRDQLADIDFVKVDYAAYLQKTKINVTTQDLADYIKKHPVMFKA 233 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + I + F + E+ Y + E Sbjct: 234 EPSRNIGIVFFPSKPSAADDAAALKEITKLYSGG-----------------TDASGGTEN 276 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 FQ+ K F+ + + + + +P ++ D I S A G Sbjct: 277 FQNTKNDSMFVTANSD-----APFNPQYLNPAQLP-PTIKDQITSAA-VGQTFGPYKEQD 329 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---KVKEDYKRLEEFLALGTSMDE 403 YV++ + +PS + + + I + + A E + KE K+L + + Sbjct: 330 VYVVSKLVGKRPSDST----LSRHILIAFKGSPAGEGVTRTKEQAKKLADSI-GAIVKAT 384 Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 ++ + + + A G P+ + L + ++P V G Y Sbjct: 385 PAKFTEFLKLSSDPNSAAQGGSLGWTTPETPFVPEFL--AYLANNPKGATGVVETQFG-Y 441 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD---I 520 + I++ +V VK + T E K+ + + + +GK+F D I Sbjct: 442 HIINIEDKKSGSMG--YKVANLVKAIKPSDATEAETDKKSRKFIQQV--QGKSFNDFVNI 497 Query: 521 GKNLGASLLTTNQINRMDNENKFFG----YDGISQVFSGP--VEMVKCFPIENGLSYVVF 574 K R + + + G D ++ F + F ++ +V Sbjct: 498 AKKNNYQFSNPKAAKRFEGQLQGLGTEKDADILTWAFDKKRSKGDTELFTVDGTGDKIVV 557 Query: 575 KVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 + + P +D+ + + + IA K+ Sbjct: 558 YLNGKQEAGLADPESVRDQIEVIVKNKLAAKQISEKIAAAKA 599 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 104/351 (29%), Gaps = 20/351 (5%) Query: 276 VFPNQKEADEAFQSL--------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327 V +++A + S+ K +F++L+ + + SLG + E Sbjct: 363 VTRTKEQAKKLADSIGAIVKATPAKFTEFLKLSSDPNSAAQGGSLGWTTPETPFVPEFL- 421 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + + KG T V+ FGY I ++ + K +V ++ ++ + A+E + Sbjct: 422 AYLANNPKGA-TGVVETQFGYHIINIEDKKSGSMG--YKV-ANLVKAIKPSDATEAETDK 477 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 R G S ++ K + A + + +L F K Sbjct: 478 KSRKFIQQVQGKSFNDFVNIAKKNNYQFSNPKAAKRFEGQLQGLGTEKDADILTWAFDKK 537 Query: 448 DPLSKDHTVAL-PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + G + V + A E V ++ K A+++S K Sbjct: 538 RSKGDTELFTVDGTGDKIVVYLNGKQEAGLADPESVRDQIEVIVKNKLAAKQISEKIAAA 597 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 N I K A + + F + Sbjct: 598 KA------SNLDQIAKLFAAPKQSAQVNLLNPSVAGAMEPKVAGAAFGVAKGKLSNPVEG 651 Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 YV+ K + + + +F LTQ + + L+ + Sbjct: 652 GTGVYVLIKKSETVNKQPGDLKQFTESLTQRSAGMFGQAWMKSLQDNADIE 702 >gi|197119425|ref|YP_002139852.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter bemidjiensis Bem] gi|197088785|gb|ACH40056.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter bemidjiensis Bem] Length = 325 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 18/201 (8%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E + R + + + + + + + ++L+ Y+ N K+ PE ++ Sbjct: 127 ESKEKEMREQLRRNLLAESYLIQRGIQDVRVPEEDLKRFYKDNSAKFTVPEAVKASHIMI 186 Query: 278 PNQKEA--DEAFQS-----------LKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIP 321 K+A +E Q+ L+ K F +LA+E + LG + +++P Sbjct: 187 TVNKKATPEEIAQANAKIVKVREEVLQGKKSFEELAKEHSSGDSASKGGDLGYINPQFMP 246 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 F L K G+ + V+ FG+ + V + KPS F EVK + + Sbjct: 247 -PEFDKVAFQL-KVGEVSDVVKTKFGFHVIKVFDKKPSRVQEFAEVKGLLEKFLLNQYQE 304 Query: 382 EKVKEDYKRLEEFLALGTSMD 402 K E L + S+ Sbjct: 305 RKRTEIAMELRRDARIEVSLK 325 >gi|298485302|ref|ZP_07003394.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160152|gb|EFI01181.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 428 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 19 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 74 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 130 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 190 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 249 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 309 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 310 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 367 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 368 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425 Query: 407 REK 409 + Sbjct: 426 AAQ 428 >gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] gi|151280746|gb|ABR89156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp. Marseille] Length = 259 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 6/146 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + + +++AEY++ K + E ++ + EA LK G KF L Sbjct: 103 ADYLKKNPVKDADIKAEYDRFKAQASDKEY-HARHILVEKEDEAKAIIAKLKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A+ K + G P +D++ +L +KG + + FGY + + + Sbjct: 162 AKASSKDPGSAANGGDLDWASPASFVKPFSDAMVAL-QKGQLSETPVKTQFGYHVIKLDD 220 Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381 ++ + + +EVK IA ++ K Sbjct: 221 VRTAKIPTLEEVKPQIAESLQQKKLQ 246 Score = 38.8 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 1/115 (0%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562 + ++ K G F D+ K + +D F + + + Sbjct: 145 AKAIIAKLKGGAKFEDLAKASSKDPGSAANGGDLDWASPASFVKPFSDAMVALQKGQLSE 204 Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P++ Y V K+ + + + ++ + + + + L + L+S+ + Sbjct: 205 TPVKTQFGYHVIKLDDVRTAKIPTLEEVKPQIAESLQQKKLQAFQQQLRSKAKIQ 259 Score = 37.3 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 12/80 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + V + +P S KQ Q + L + D L++ L Sbjct: 22 AQNLAVVNGKPIPSSRADVMIKQMTSQGQQ-----------DTPELRAMVKDELINREIL 70 Query: 100 DQFIEDIGLEADHGRVWGEI 119 Q + +GL A V +I Sbjct: 71 IQEADKLGLGAQAD-VKNQI 89 >gi|307729669|ref|YP_003906893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] gi|307584204|gb|ADN57602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] Length = 259 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 6/146 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK S+ E+ A Y + E + ++ N+++A + +K G F +L Sbjct: 103 EDFVKKNTPSDAEVTARYNALIKDAGGKEY-HLHHILVDNEQQAKDLIAKIKGGASFEEL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 A++ K G +S A++ L +KG + +H FG+ I V + Sbjct: 162 AKQFSKDPGSGKNGGDLDWSDPKAYVPEFANAATHL-QKGQMSDEPVHTQFGWHIIRVDD 220 Query: 356 IKPSFTVSFQEVKKDIANQMRITKAS 381 ++ ++V+ I Q++ K Sbjct: 221 VRNITPPPLEQVRAQIVQQIQQEKLQ 246 Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 15/152 (9%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404 + + T S EV ++ E + ++ ++ ++ +A G S +E+ Sbjct: 102 IEDFVKKNTPSDAEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKGGASFEEL 161 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 +++ P G D+ + A + D V G + Sbjct: 162 AKQFS----KDPGSGKNGGDLDWSDPKAY--VPEFANAATHLQKGQMSDEPVHTQFG-WH 214 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 +++ + LE+V + + + K Sbjct: 215 IIRVDDVRNITPPPLEQVRAQIVQQIQQEKLQ 246 Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G +F ++ K + +D ++ K + + + Sbjct: 142 EQQAKDLIAKI-KGGASFEELAKQFSKDPGSGKNGGDLDWSDPKAYVPEFANAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+ + + +V + + ++ + + Q + ++ L + L+ + Sbjct: 201 QMSDEPVHTQFGWHIIRVDDVRNITPPPLEQVRAQIVQQIQQEKLQAFEEGLRKNAKIQ 259 >gi|40063240|gb|AAR38067.1| PPIC-type PPIASE domain protein [uncultured marine bacterium 577] Length = 263 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 3/156 (1%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S EL+ EY+ + ++ + EA + +KKG KF ++ Sbjct: 106 ADFIKKNDPSEKELRDEYQAVSAASMGDQEYNPSHILISTEAEAKDIIAKIKKGGKFEEI 165 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+++ + G +S A+++ L K + SFG+ + + + Sbjct: 166 AKDRSIDDGSKNKGGELGWSSARSYAQPFAEALVKLKKGEITQAPVKSSFGWHVIRSNGM 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +P F+EVK+ + ++ K ++E + + Sbjct: 226 RPLKIPPFKEVKQKVQQRILQQKFQAYLEELKDKAK 261 Score = 42.3 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 ++A ++ + K GK F +I K+ + N+ + + + + + Sbjct: 146 EAEAKDIIAKIKKGGK-FEEIAKDRSIDDGSKNKGGELGWSSARSYAQPFAEALVKLKKG 204 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P+++ + V + + + + + Q + + + + LK + + Sbjct: 205 EITQAPVKSSFGWHVIRSNGMRPLKIPPFKEVKQKVQQRILQQKFQAYLEELKDKAKIE 263 >gi|260467140|ref|ZP_05813318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium opportunistum WSM2075] gi|259029064|gb|EEW30362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium opportunistum WSM2075] Length = 309 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 5/138 (3%) Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 ++++ E++A Y++ ++ ++EA+ + L G F +LA E Sbjct: 141 AKVTDAEVRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLDGGADFQKLANEHTS 200 Query: 306 SL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG F + + F+L + FG+ + + + + Sbjct: 201 DPSGKTSGGDLGWFGPGQMV-PEFDKAAFALEVGKYTEQPVQSQFGWHVIKLEDKRTKQP 259 Query: 362 VSFQEVKKDIANQMRITK 379 +F +VK + K Sbjct: 260 PAFDDVKDQAKQAVIRDK 277 Score = 41.9 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 47/131 (35%), Gaps = 4/131 (3%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKN--LGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 +A ++ + G +F+ + S T+ + + F+ V Sbjct: 175 KEEAEAIIKQLD-GGADFQKLANEHTSDPSGKTSGGDLGWFGPGQMVP-EFDKAAFALEV 232 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P+++ + V K+ + + D Q + +D +++ L++ V Sbjct: 233 GKYTEQPVQSQFGWHVIKLEDKRTKQPPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVE 292 Query: 618 VHDNLIQRYLD 628 + D +++ +D Sbjct: 293 IPDVKLKQAVD 303 >gi|74317550|ref|YP_315290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] gi|74057045|gb|AAZ97485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] Length = 274 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 4/152 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + K +++ E+QA Y+K K PE R ++ + EA + L K KF Sbjct: 117 LEDYIKAHPVTDAEVQAAYDKAKAGPIEPEYR-ARHILVSTEAEAKKVIADLGKKAKFET 175 Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA++ K G ++ ++++ SL K + FGY + + + Sbjct: 176 LAKKMSKDPGSAKNGGALDWADRRAFVPEFSEALASLKKGETTQTPVKTQFGYHVIRLDD 235 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + V+ +I Q++ + + V Sbjct: 236 TRQPKLPELNAVRDEIVKQLQQQRVRDAVTAA 267 >gi|119952910|ref|YP_945119.1| basic membrane protein [Borrelia turicatae 91E135] gi|119861681|gb|AAX17449.1| basic membrane protein [Borrelia turicatae 91E135] Length = 344 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 54/418 (12%), Positives = 123/418 (29%), Gaps = 99/418 (23%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K+ + + FL++ + + V+ + + + + F + + + + Sbjct: 4 IKVIFMGNVLCFLLFFVVGITSFAQNTPVVI-INLHSNEIITKTEFDSK----VNTLKKT 58 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G +++ K++L L++ Q G++ + V I Sbjct: 59 QGRDLSNAE------RKQVLQILIADVLFGQEALKQGIKVEDAEVMQTIRT----QFGLL 108 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + + + +G N E + + LS ++ Sbjct: 109 NLTDEQIKQMVESQGTNWNELLSSMKRSLSAQKLI------------------------- 143 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + I P + +++E K + P+ RIS++ Sbjct: 144 ----LKMAQPKFSEIKIPGEKEVVEYYEANKTKFVNPDIARISHVF-------------- 185 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD 309 + S + + E L A + +K K F + + Sbjct: 186 -------------FSSKDKKRSEVL-----ANAKDIVNQIKSKKITFEEAVRKYSNDEGS 227 Query: 310 ----ISLGSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 LG ++ + + +F + KKGD + I G+ I V+ + Sbjct: 228 KVKNGDLGFLARGDQNAQNVLGLDFVKEVF-MLKKGDISQPISSKEGFHIVKVTEMYSQR 286 Query: 361 TVSFQE---------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 + Q+ VK I N M + V + + + L S+ + K Sbjct: 287 FLGLQDKISPNVDMTVKDAIKNNMVNIHQQQIVARVQQEIYDKLNKSASIQILDSSLK 344 >gi|304413706|ref|ZP_07395150.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella insecticola LSR1] gi|304283797|gb|EFL92191.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella insecticola LSR1] Length = 434 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 60/436 (13%), Positives = 138/436 (31%), Gaps = 75/436 (17%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 +L + +I+ + S + V + + S + Q + Sbjct: 5 GMLILSMVIFTHAGFAASQQTDKSAAIVNSKVILQSDIDTLLQSVKFSAEQ-----ADQP 59 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 L +I+++L+ Q + +G+ + IA N + D Sbjct: 60 IPDEKQLRHQIIESLIMNDIQLQMAQKMGMTISESHLDNAIANIAA----QNHMTIDQLR 115 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RS 191 SRLA+EGIN + Y H + ++V ++ ++ + + Sbjct: 116 SRLAKEGINYQTYRTHIRNEMQISEVRNNEVRRRIKILPQEVESLAQQLAAQTGGNTELN 175 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-- 249 + +I+++ ++ A + A S+ + + Sbjct: 176 ISHILISLPENASVQQKDQAEKKA------EKIVAEIKSDKSFAKLAIAHSSDSQALKGG 229 Query: 250 --------------NDELQAEYEKN---------------------KEKYFSPEIRTVEQ 274 ++L+ +++ +K S V Sbjct: 230 QMGWSKLAELPRLFAEQLKTANKRDIIGPIRSGVGFHILKVNDIRKADKKISITEMRVRH 289 Query: 275 LVFP-----NQKEADE----AFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYI 320 ++ K+A Q +K GK F +A E+ G + LG S + Sbjct: 290 ILLKPSVMMTDKQAQAKLQSVRQKIKSGKTDFAAVAREISEDPGSAQQGGDLGWISPDDR 349 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D + + + SL KKG +P + S G+ + + + + + + + +K+ + K Sbjct: 350 YDPTFLNELASL-KKGAISPPVRSSLGWHLIQLIDSR-TVDRTDEMLKEQAYRMLIKRKF 407 Query: 381 SEKVKEDYKRLEEFLA 396 SE+++ + + Sbjct: 408 SEELQPWMQEIRAAAY 423 >gi|171321062|ref|ZP_02910045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MEX-5] gi|171093676|gb|EDT38826.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MEX-5] Length = 260 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ ++++A + +K G KF L Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDVAPPPFDQVKAQIAQQLVQQKLQ 247 Score = 40.4 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + + + + D+ + + Q + + L + L+ Q + Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260 >gi|152995084|ref|YP_001339919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] gi|150836008|gb|ABR69984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] Length = 416 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 58/433 (13%), Positives = 132/433 (30%), Gaps = 77/433 (17%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 F ++ F + + + + + V + + S ++ ++ + G V+ Sbjct: 6 FFSLII--FALASVQTLHAAPTKIDGISAIVDSKPILESDIMSRFQIVKDRVP---GGVM 60 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + ++I + ++ A + +G+ A V I K+ Sbjct: 61 TD------NIHRQIQNQMIDEALQVNYARKVGMRASSSEVDNAILGV----AKNMNLDLQ 110 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-----------GGMRPSNLLLDQAKR 184 + LA +GIN + Y + + + ++ V S+ + + K Sbjct: 111 GLKNVLADKGINYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITKEKD 170 Query: 185 FYFENRSVDYIVLNNRHVPAIADP------SNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + I N + Q E + E + + + Sbjct: 171 QVHLRHIIIRASNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAI-EGGDLGWRPLN 229 Query: 239 VHEKEKKIEISNDE--------------LQAEYEKNKEKYFSPEIRTVEQLVF------- 277 + +++ L EK + ++ Sbjct: 230 QLPPLFVRALESEKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEIRN 289 Query: 278 --PNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFS 331 + ADE ++ L+ G F QLA+E QG +L LG + + + + Sbjct: 290 MEQTKVLADELYKKLENGADFAQLAKEYSEDQGSTLQGGDLGWVTLGAMV-PEFEE-VMK 347 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 GD + FG+ I V + + DI+++++ + A + + + Sbjct: 348 KTNIGDISKPFRTQFGWHILQVEGRREA----------DISDKVKRSNAERALTAQKQDI 397 Query: 392 EEFLALGTSMDEI 404 LG +DE+ Sbjct: 398 ----VLGNWLDEL 406 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 13/199 (6%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-- 277 + YR + I +K+I IS E+ + + + ++ Sbjct: 122 NYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITKEKDQVHLRHIIIRA 181 Query: 278 ----PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 + + F+Q A E ++ LG +P ++ Sbjct: 182 SNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAIEGGDLGWRPLNQLP-PLFVRALE 240 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYK 389 S +KG + + G+ + V + Q+ K I + + E+ K Sbjct: 241 S--EKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEIRNMEQTKVLAD 298 Query: 390 RLEEFLALGTSMDEISRRE 408 L + L G ++++ Sbjct: 299 ELYKKLENGADFAQLAKEY 317 >gi|330817257|ref|YP_004360962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] gi|327369650|gb|AEA61006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] Length = 259 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ E++A+Y++ K + + ++ N+++A + +K G KF L Sbjct: 103 EDFVKKNQPSDAEVKAKYDE-LAKGATGSEYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G P A++ L K + FG+ I V ++ Sbjct: 162 AKQFSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDEPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 +P F++VK +A QM K Sbjct: 222 RPIAPPPFEQVKAQLAQQMVQQKLQ 246 Score = 43.8 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D + K F + + Sbjct: 142 EQQAKDLIAKI-KAGAKFEDLAKQFSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + ++ + L Q M + L + L++Q + Sbjct: 201 QMTDEPVKTQFGWHIIRVDDVRPIAPPPFEQVKAQLAQQMVQQKLQAFEEKLRAQAKIQ 259 Score = 39.2 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ K L + G ++++++ P G D+ + + + + Sbjct: 142 EQQAKDLIAKIKAGAKFEDLAKQFS----KDPGSAKNGGDLDWADPKS--FVPEFANAAT 195 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 D V G + +++ + P E+V + + K E++ + Sbjct: 196 HLQKGQMTDEPVKTQFG-WHIIRVDDVRPIAPPPFEQVKAQLAQQMVQQKLQAFEEKLRA 254 Query: 502 KAN 504 +A Sbjct: 255 QAK 257 >gi|320109145|ref|YP_004184735.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4] gi|319927666|gb|ADV84741.1| SurA domain protein [Terriglobus saanensis SP1PR4] Length = 360 Score = 97.4 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 46/379 (12%), Positives = 113/379 (29%), Gaps = 82/379 (21%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 L+ + + G G+ V SV + +P + ++ ++ + VN Sbjct: 16 LLIAGTLSLALTG----CHPTHGADVVASVNGKAIPRADLDRFYQSQMAQNQNQ--QPVN 69 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 ++A S L IL +L+ + Q + L A + V ++ ++ + Sbjct: 70 EDQADSARL--TILRSLIDEEIIQQRAAKMNLTASNEDVDAKVTEMKA------PYTEEQ 121 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 F RL + + L+ ++ Sbjct: 122 FNERLKASNHTLDDMKREIRRSLTFDKLLN------------------------------ 151 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 + + + + ++ ++ ++ +K Y E + V ++ +A Sbjct: 152 ---KEINSKINITDGDVSSYYAAHKSEYNLMET-QYHLGQVLVTSFPSPQAVNLQSSKAT 207 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISL 312 + +K+ + G+ F +A E + + + Sbjct: 208 ND------------------AEAKKKIQTLKNRIDSGEDFSAIAMNFSENPQTAQNGGDM 249 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTP----------VIHGSFGYVIAHVSNIKPSFTV 362 G S+ + L+ + + K G T GYVI + + + Sbjct: 250 GFISESQLHTDILSYTAVTKLKAGQVTDILPVFDQPASPSKKVVGYVILKLISRDAAGQR 309 Query: 363 SFQE--VKKDIANQMRITK 379 + V+++I Q+ + Sbjct: 310 LLTDPAVQQNIRQQLHDAR 328 >gi|255026336|ref|ZP_05298322.1| hypothetical protein LmonocytFSL_08280 [Listeria monocytogenes FSL J2-003] Length = 247 Score = 97.0 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 83/225 (36%), Gaps = 26/225 (11%) Query: 202 VPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIE 247 + + + ++KY++ Y + + + Y L E ++ Sbjct: 15 LEDKYTVTEKEVNAEYKKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMD 74 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 +S +L+A Y+ + V ++ ++ A E LK G+KF LA+E Sbjct: 75 VSESKLKAYYKTWEPDIT------VRHILVDDEATAKEIQTKLKNGEKFTDLAKEYSTDT 128 Query: 308 SDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + + G + P D + + ++L K D + ++ ++GY + + T + Sbjct: 129 ATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAK 188 Query: 365 QEV---KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 ++ I +Q+ + +K++ K + D + Sbjct: 189 EKANVKAAYIKSQLTSENMTAALKKELKAANIDIKDSDLKDAFAD 233 >gi|15805112|ref|NP_293797.1| peptidyl-prolyl cis-trans isomerase [Deinococcus radiodurans R1] gi|6457733|gb|AAF09662.1|AE001870_1 peptidyl-prolyl cis-trans isomerse, putative, PpiC family [Deinococcus radiodurans R1] Length = 677 Score = 97.0 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 73/627 (11%), Positives = 188/627 (29%), Gaps = 138/627 (22%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 +LF+ + V+ V V ++ ++ +++ + G V+ + + + Sbjct: 55 GSLFNRQEGTPVIKVNGDAVTAEQLESA-RRASPLLADEPGSVLADDAKVYL------VS 107 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 + + ++D ++ V E+ + + + + L G+ + + Sbjct: 108 QAIDRGAVLSGLKD--VQVSRADVNAEVQKV---RESNKLTDNKAWTDALQSNGLTDASF 162 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + L+ A+ P++A Sbjct: 163 RTQVRQQLAYQRKTDELR---------------------------------KAVPAPTDA 189 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 L +++ K Y+A Sbjct: 190 ELKAYYDLNKSKYQAEPQI----------------------------------------V 209 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLA-------EEQGKSLSDISLGSFSKEYIPDV- 323 Q+V ++ +A + G F LA +++G +L+ + G+ + + Sbjct: 210 GRQIVVTDKAKAQSLLAQARGGADFAVLASANSTENKDRGGALAPLD-GNQPRPVLQAAL 268 Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 ++ ++ F L K G T VI + I V P +F++ K D+ + +R K + Sbjct: 269 PTAVGEAAFRL-KNGGLTDVIESGGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQQKQN 327 Query: 382 EKVKEDYKRLEE----FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI---- 433 +++ L + T E + ++P D + + +++A + Sbjct: 328 AALEKWSDDLRKNAQVEYVDPTWKVENPTVASVAGHNIPYSDVVAQVMNNQQIAGLIGQL 387 Query: 434 -----------PYKEQLLFRVFGKDDPLSKDHTVALPDGSY----------MWVQIKESI 472 +K Q++ ++ + + L + + Sbjct: 388 PAEQLPTLLNKTFKPQVVQQLIQGYAAPNIAQKLGLSLSGSRQEIAQQLAAYGARDVKVS 447 Query: 473 PARDRKL--EEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529 A +K E V +V + + + ++A +++ +G +F G ++ Sbjct: 448 DADVQKYYRENVKQYEVPASATLDEASFKDKNQAAAFRADWNGQG-DFVTAASKAGGTVS 506 Query: 530 TTNQINRMDNENKFFGYDGISQVFS------GPVEMVKCFPIENGLSY-VVFKVTNSKVG 582 Q++ ++ + F G + P+ + S V + Sbjct: 507 ERGQVSPTADQTTGAVSPLTAAAFGQNLRSVGAGSLTPVVPVGDRFSVGYVRDLVRPTTR 566 Query: 583 PVQEK-DKFISYLTQMMNKDLLDSVIA 608 P+ E D+ L + + + Sbjct: 567 PLSEVGDEIRQGLLSSKQAEAGQAFLD 593 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 78/208 (37%), Gaps = 6/208 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +++S+ ++Q Y +N ++Y P T+++ F ++ +A F+ Sbjct: 437 AAYGARDVKVSDADVQKYYRENVKQYEVPASATLDEASFKDKNQAAAFRADWNGQGDFVT 496 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK------GDFTPVIHGSFGYVIAH 352 A + G ++S+ S + + + + + G TPV+ + + + Sbjct: 497 AASKAGGTVSERGQVSPTADQTTGAVSPLTAAAFGQNLRSVGAGSLTPVVPVGDRFSVGY 556 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V ++ T EV +I + +K +E + + L+ ++D++ + S Sbjct: 557 VRDLVRPTTRPLSEVGDEIRQGLLSSKQAEAGQAFLDKQVSALSPKNNLDQVLEAQAKPS 616 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 + + + +E L Sbjct: 617 RRRLPKPKRPRRRRRERRPPQMRREAAL 644 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 76/243 (31%), Gaps = 7/243 (2%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 K + L G ++ + D + + V + F Sbjct: 218 KAKAQSLLAQARGGADFAVLASANSTENKDRGGALAPLDGNQPRPVLQAALPTAVGEAAF 277 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + D + G + V++++ +P + + E+ TDV + K + ++ Sbjct: 278 RLKNGGLTDVIES--GGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQQKQNAALEKWSD 335 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCF 563 L E + +N + + + I D + I+ + P E + Sbjct: 336 DLRKNAQVEYVDPTWKVENPTVASVAGHNIPYSDVVAQVMNNQQIAGLIGQLPAEQLPTL 395 Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + VV ++ P + +S +++ + AY V V D + Sbjct: 396 LNKTFKPQVVQQLIQGYAAPNIAQKLGLSL--SGSRQEIAQQLAAY--GARDVKVSDADV 451 Query: 624 QRY 626 Q+Y Sbjct: 452 QKY 454 >gi|157825956|ref|YP_001493676.1| protein export protein prsA precursor [Rickettsia akari str. Hartford] gi|157799914|gb|ABV75168.1| protein export protein prsA precursor [Rickettsia akari str. Hartford] Length = 282 Score = 97.0 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 7/154 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 K I++ EY K E V ++ +QKEA++ L KG F +LAEE Sbjct: 116 KSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEELS 175 Query: 305 KSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + S G I + + F+L K + + + +FG+ I V KP Sbjct: 176 LDKASASNGGVIGYIILNQPGQLVPEFENKAFAL-KVNEVSIPVKTTFGWHIIKVLEKKP 234 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +E K I N + + + + + + Sbjct: 235 VPIPTKEEAKVTIDNILAAEVLKKYISDLESKAD 268 >gi|307244093|ref|ZP_07526212.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus stomatis DSM 17678] gi|306492617|gb|EFM64651.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus stomatis DSM 17678] Length = 353 Score = 97.0 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 105/285 (36%), Gaps = 51/285 (17%) Query: 145 GINEKEYIDHYT--KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 GI++KEYI+ K++ M+ N + + V V + Sbjct: 32 GISKKEYIEQLKFTKLMYEMQYGDKIWDQMKSQNKEYQETVKKNVLQSMVKSRVYLSYAE 91 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKR------------------ISYILFDVHEKEK 244 P VL+Q+ +K K+ + + K + + ++ +K Sbjct: 92 KNNVKPDEKVLSQYKKKNKEAFENAKAKEKFEKAGIDQAFMDKYSEQAATMTSLLNFLQK 151 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------------ADEAFQ 288 K + +E++A++E +K ++ + A++ + Sbjct: 152 KAMPTEEEVKAKFETEGDKL------DASHILIKTVDDNNKPLSDEKKAEAKKKAEDLLK 205 Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 LK G F +LA+ + G + +LG F K + + F+L K+G+ +P++ Sbjct: 206 QLKSGTDFAELAKKNSQDPGSAAKGGALGEFGKGQMV-SEFEKAAFAL-KEGEISPIVET 263 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 FGY I ++ + +++ K I + K + V E K Sbjct: 264 QFGYHIIKLNKRVKA---DYEKSKDKIKTSLINEKIKKLVDEIVK 305 Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 14/188 (7%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV--- 75 V+ + + GLS S S V SV + + +I K M + G + Sbjct: 4 VLAILLAAVVGLSTVACS---SDDVASVDGKGISKKEYIEQLKFTKLMYEMQYGDKIWDQ 60 Query: 76 --NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + + + K +L ++V + E ++ D + ++ F Sbjct: 61 MKSQNKEYQETVKKNVLQSMVKSRVYLSYAEKNNVKPDEKVLSQYKKKNKE------AFE 114 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + GI++ + + + T ++ P+ + + Sbjct: 115 NAKAKEKFEKAGIDQAFMDKYSEQAATMTSLLNFLQKKAMPTEEEVKAKFETEGDKLDAS 174 Query: 194 YIVLNNRH 201 +I++ Sbjct: 175 HILIKTVD 182 >gi|292493646|ref|YP_003529085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] gi|291582241|gb|ADE16698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] Length = 308 Score = 97.0 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 21/183 (11%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQA----EYEKNKEKYFSPEIRTVEQLVFPNQKE-- 282 +++ + S+ +L+A Y +K+K + E R V ++ + Sbjct: 101 RRQVLARALMKKVAGEAAVPSDRDLKALARERYSLHKDKLRTAEKRRVAHILLAEPADCP 160 Query: 283 ----------ADEAFQSLKKGKKFIQLAEE----QGKSLSDISL-GSFSKEYIPDVSLAD 327 A + L G F A E +G + L G ++ D Sbjct: 161 CDERPPARERAAALRRELLAGGDFGAAARERSRDKGTAPDGGELPGWIKRDGRLVKPFED 220 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + F+L K GD + + FG + + +KPS +SF+EVK + Q+R + +++ Sbjct: 221 AAFALTKPGDISKPVETPFGVHLIKLLEVKPSRQLSFEEVKGKLMRQVRAEVRASAMEQK 280 Query: 388 YKR 390 + Sbjct: 281 RSQ 283 >gi|52144166|ref|YP_082662.1| peptidylprolyl isomerase [Bacillus cereus E33L] gi|51977635|gb|AAU19185.1| peptidyl-prolyl cis-trans isomerase (protein export protein) [Bacillus cereus E33L] Length = 285 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 17/148 (11%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + K ++ +++A Y+ PEI+ ++ ++ EA E + L G F + Sbjct: 115 AMNEAIKKSVTEKDVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDVGASFEE 165 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+++ + L LG F+ + + + L K G + + GY I ++ Sbjct: 166 LAKQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-KVGQISNPVKSPNGYHIIKLT 223 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 + K + EVK I + + ++ Sbjct: 224 DKKE--LKPYDEVKDSIRKNLEEERIAD 249 Score = 36.9 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 55/132 (41%), Gaps = 10/132 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L +G S +E++++E + G Sbjct: 128 DVKAHYKPEIKASHILVSDENEAKEIKKKLDVGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ P E +++ + V P+G Y +++ + + +EV Sbjct: 188 SGR---MAPEFETAAYKL----KVGQISNPVKSPNG-YHIIKLTDKKE--LKPYDEVKDS 237 Query: 486 VKKDWKTVKTAE 497 ++K+ + + A+ Sbjct: 238 IRKNLEEERIAD 249 >gi|122070641|sp|Q145L3|SURA_BURXL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 450 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 56/427 (13%), Positives = 123/427 (28%), Gaps = 78/427 (18%) Query: 30 LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 + S SG TV V + ++Q+ V ++ L Sbjct: 25 VQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----L 79 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 +++L+ +V Q ++ G+ D V + R N + DV+ SR+ +G Sbjct: 80 RQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQG 135 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193 + + L+ + + V + S+ + + R + Sbjct: 136 VPWTTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGLTSDLHLQH 192 Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226 ++ + + + K N+ Sbjct: 193 IFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSK 252 Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277 PE+ + + L I S+ E+ ++ + S + V ++ Sbjct: 253 LPPEFVKAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 312 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326 +++ E + G F + A + G S LG S Sbjct: 313 VGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 371 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 ++ SL + G + + +GY + V + S S + + KA + + Sbjct: 372 RAMNSL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVAQQMDLARQAIGQRKAEQAYAD 429 Query: 387 DYKRLEE 393 + L + Sbjct: 430 WLRELRD 436 >gi|315608313|ref|ZP_07883302.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574] gi|315249943|gb|EFU29943.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574] Length = 716 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 87/699 (12%), Positives = 200/699 (28%), Gaps = 132/699 (18%) Query: 17 FLVVLFVPFLIWG-LSDALFSVSGSS------TVVSVGRQKVPFSSFINSWKQELGMISQ 69 +++ + F ++ +++ LF SS V V +K+ F + +I Sbjct: 12 LILICIIGFGLFAFIAEELFRSCESSRNDQRQQVGEVLGEKISVQDFQKLLDEYQEVIKM 71 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--------EIAR 121 + G SE + + + + V +++ +++GL + + + Sbjct: 72 QQGTETLSEE-QLNQVKDMVWNTYVQSKLVEKEAKELGLTVTDTELQDVLKAGTNPMLLQ 130 Query: 122 SPLFHGKDNKFSHDVFVSRLAR-----EGINEKEYIDH-------------YTKMLSRTD 163 +P + + +F LA +N + + + L Sbjct: 131 TPFVNQQTGRFDAASLQKFLADFKANKAAVNPQMQEQYQKIYNYWTFIEKTLRQQLLAQK 190 Query: 164 VVGMFVGGMRPSNLLLDQA----------------------------------------K 183 G+ + + A Sbjct: 191 YQGLLAHCFLSNPVEAKMAFEDENQESQINLAAFPYSDIADNKVTVEESDLKAKYDQLKA 250 Query: 184 RFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 RFY E+R + Y+ + PA L + + E R S L + Sbjct: 251 RFYQPMESRDIKYVDIEVSASPADRAALQKELAGYRTQLAAAADPAEVVRKSGSLVEYIG 310 Query: 242 KEKKIEISNDELQAEYEKNK----------------------EKYFSPEIRTVEQLVF-- 277 + ++ A+++ K P+ + Sbjct: 311 VPVPRQFFPQDVAAQFDSMAVGVTSAVKESTLDNSLTIVRLLGKVSLPDSVQFRSIQIGG 370 Query: 278 ----PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI-PDVSLADSIF 330 AD + +L+ G F LA++ G + + + + + S+ Sbjct: 371 ETAAKASATADSVYTALQGGADFEALAKKYGQTGAKTWATAQQLVGSLMQSNTPDQKSMV 430 Query: 331 SLAKKGDF--TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + + G+ ++ + G +I V+ K F E + + + + Y Sbjct: 431 NAVRNGEVNKYNLVKLTQGSIIVQVTARKA-----FSENYTAAVIKKTNDFSKDTYRTAY 485 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 + F++ ++ +I + + L ++ VA I + L +F + Sbjct: 486 NKFASFVSANSTGADIEKNAEKAGYRLQTLND--MTTSTHNVANIHSTREALKWIFEAKE 543 Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDWKTVKTAEEVSSKANQL 506 + + V + + A R + +V +K + K AE++ +K Sbjct: 544 GEVSPMYECGDNNHLLVVVLDKIHNAGYRNMNDAQVKEMLKAEVIRDKKAEQLMAKV--- 600 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMVKC 562 +G K GA + NQ+ V + Sbjct: 601 ------KGVTGISAAKAKGAKVSMVNQVTFAAPVFVPLTGASEPALSGAVAATKKGQFST 654 Query: 563 FPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNK 600 ++ +F+VT + P + + + L Q + Sbjct: 655 HAVKGAAGVYLFQVTGRTMRPGKFDDKAQEAKLAQRAMQ 693 >gi|326803153|ref|YP_004320971.1| putative peptidylprolyl isomerase PrsA3 [Aerococcus urinae ACS-120-V-Col10a] gi|326651580|gb|AEA01763.1| putative peptidylprolyl isomerase PrsA3 [Aerococcus urinae ACS-120-V-Col10a] Length = 340 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 28/245 (11%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL----NNRH 201 I + + D K+ + + + + + D+ K E +N Sbjct: 40 ITQGQLNDQMKKVAGDQTLRQLILSEISKQEVGKDRYKEIEQETDQQIAATKAQVGDNDK 99 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + S + +++ Y +K I +S++EL+ YE + Sbjct: 100 FQNVLKSSGVPSEEAYKESLIQYT-----------LTQEALKKNIPVSDEELKKAYEDYE 148 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 + ++ ++ EA + + L +G F LA+E K SLG K Sbjct: 149 PAA------EISHILVEDENEAKDIIKQLDQGGDFSALAKEHSKDPGSKEKGGSLGQVEK 202 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + D+ F L + + +GY I + K SF++ K ++ Q++ Sbjct: 203 GQMVK-EFEDAAFKLNEGEYTKEPVKSQYGYHIIKLD--KKGQKSSFEDEKDNLTEQVKN 259 Query: 378 TKASE 382 K + Sbjct: 260 KKMQD 264 >gi|86136812|ref|ZP_01055390.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193] gi|85826136|gb|EAQ46333.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193] Length = 283 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 67/175 (38%), Gaps = 12/175 (6%) Query: 227 PEYKRISYILFDVHEKEKKI------EISNDE-LQAEYEKNKEKYFSPEIRTVEQLVFPN 279 P Y +++ + S++E ++ YE + ++ Sbjct: 88 PHYVKLAVENEMRALLAANVIETVMKSASDEEAVRQAYEDKYSDGDGGDEFNAAHILVET 147 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKG 336 Q++A E L G F +A+E+ S LG F++ + ++ L + G Sbjct: 148 QEDALEIKSELDTGADFSIMAKERSTGPSGPNGGDLGWFTRGRMV-PEFEAAVLDL-RAG 205 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + FG+ + + + + +F+EV++ ++ +++ +V + Sbjct: 206 EISAPVETQFGWHLILLKERRKTAAPAFEEVRETLSQELQNAAVEARVSDLTAAA 260 >gi|229068702|ref|ZP_04202000.1| Foldase protein prsA 1 [Bacillus cereus F65185] gi|229078350|ref|ZP_04210914.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2] gi|229177575|ref|ZP_04304953.1| Foldase protein prsA 1 [Bacillus cereus 172560W] gi|228605937|gb|EEK63380.1| Foldase protein prsA 1 [Bacillus cereus 172560W] gi|228705025|gb|EEL57447.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2] gi|228714449|gb|EEL66326.1| Foldase protein prsA 1 [Bacillus cereus F65185] Length = 289 Score = 97.0 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 90/246 (36%), Gaps = 39/246 (15%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ D + + M + + K + E++ VD Sbjct: 35 ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77 Query: 206 ADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + + Q+ ++ K E + S EK + I++ +++A++E K Sbjct: 78 ----DEMKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYK 133 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 ++ ++ +++ A + L +GK F +LA++ + LG F Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + ++ L KKG+ + + FGY I V++ F + K DI + Sbjct: 188 GKMVK-EFEEAAQKL-KKGEVSEPVKTQFGYHIIKVTDNHADAN--FDKAKADIKKSLVQ 243 Query: 378 TKASEK 383 K + Sbjct: 244 EKTQDA 249 >gi|122070657|sp|Q48NT5|SURA_PSE14 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 428 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 19 ESVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 74 LQMGERSGIRVSDNELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L DQ K E + I++ + A Sbjct: 130 IISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 190 VKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAMPVGDVT 249 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A++ + ++ Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQ 309 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + + +G+ + ++G Sbjct: 310 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMNETPQGELSKPFKTAYG 367 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 368 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425 Query: 407 REK 409 + Sbjct: 426 AAQ 428 >gi|91781822|ref|YP_557028.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia xenovorans LB400] gi|91685776|gb|ABE28976.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia xenovorans LB400] Length = 453 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 56/427 (13%), Positives = 123/427 (28%), Gaps = 78/427 (18%) Query: 30 LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 + S SG TV V + ++Q+ V ++ L Sbjct: 28 VQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----L 82 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 +++L+ +V Q ++ G+ D V + R N + DV+ SR+ +G Sbjct: 83 RQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQG 138 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193 + + L+ + + V + S+ + + R + Sbjct: 139 VPWTTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGLTSDLHLQH 195 Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226 ++ + + + K N+ Sbjct: 196 IFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSK 255 Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277 PE+ + + L I S+ E+ ++ + S + V ++ Sbjct: 256 LPPEFVKAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 315 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326 +++ E + G F + A + G S LG S Sbjct: 316 VGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 374 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 ++ SL + G + + +GY + V + S S + + KA + + Sbjct: 375 RAMNSL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVAQQMDLARQAIGQRKAEQAYAD 432 Query: 387 DYKRLEE 393 + L + Sbjct: 433 WLRELRD 439 >gi|324999487|ref|ZP_08120599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp. P1] Length = 353 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 80/178 (44%), Gaps = 7/178 (3%) Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 + A ++++ +++ +++ +++ +++ PE R + +V ++ + Sbjct: 158 DLTAELHRQLVTSRLFEQVTAGVPPVTDQDVRTAFDERRDQMQVPEQRELRNIVVDSRDK 217 Query: 283 ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 AD+ + L G F LA ++ + +LG + D AD+ F+ G F Sbjct: 218 ADDLRRRLDDGADFATLARADSMDESTKQAGGALGKLPATAL-DQPFADAAFTTPSGGLF 276 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFL 395 + FG+ + V+ I P+ ++F++V +++ + +A + +E +R+ + Sbjct: 277 -GPVQTRFGWNLGQVAGITPAVPLTFEQVAENLRATLTDERAGDAWREWLGERIRDAR 333 >gi|186475788|ref|YP_001857258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] gi|184192247|gb|ACC70212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] Length = 259 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A+Y++ ++ E + ++ N+++A + +K G F L Sbjct: 103 ESYVKKNQPTDAEVKAKYDELVKQIGGKEY-HLHHILVENEQQAKDLIAKIKGGASFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K +H FG+ I V ++ Sbjct: 162 AKQFSKDPGSGKNGGDLDWSDPKAYVPEFAAAAEKLQKGQMTDEPVHTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + + F++VK IA QM+ K Sbjct: 222 RQTPPPPFEQVKAQIAQQMQQEKLQ 246 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 56/159 (35%), Gaps = 10/159 (6%) Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAE--------EVSSKANQLVLEYSKEGKNFRD 519 I+ + EV + K + E E +A L+ + K G +F D Sbjct: 102 IESYVKKNQPTDAEVKAKYDELVKQIGGKEYHLHHILVENEQQAKDLIAKI-KGGASFED 160 Query: 520 IGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 + K + +D ++ K + + + + P+ + + +V + Sbjct: 161 LAKQFSKDPGSGKNGGDLDWSDPKAYVPEFAAAAEKLQKGQMTDEPVHTQFGWHIIRVDD 220 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P ++ + + Q M ++ L + L+++ V Sbjct: 221 VRQTPPPPFEQVKAQIAQQMQQEKLQAFEENLRAKAKVQ 259 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 18/163 (11%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE-----KVKEDYKRLEEFLA---LGTSMDEI 404 + + + EVK ++ E + E+ ++ ++ +A G S +++ Sbjct: 102 IESYVKKNQPTDAEVKAKYDELVKQIGGKEYHLHHILVENEQQAKDLIAKIKGGASFEDL 161 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 +++ P G D+ + A + D V G + Sbjct: 162 AKQFS----KDPGSGKNGGDLDWSDPKAY--VPEFAAAAEKLQKGQMTDEPVHTQFG-WH 214 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKAN 504 +++ + E+V + + + K E + +KA Sbjct: 215 IIRVDDVRQTPPPPFEQVKAQIAQQMQQEKLQAFEENLRAKAK 257 >gi|152984838|ref|YP_001346133.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PA7] gi|150959996|gb|ABR82021.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PA7] Length = 430 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 131/408 (32%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + ++ G + E L +++L+ L+ Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + +A + N S + F + L R+G++ + D + + Sbjct: 86 QQIGDRSGIRISDEELNQAMATI----AQRNGMSLEQFQAALTRDGLSYADARDQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ S + + E R + ++ + + + Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201 Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ +K A + ++ ++ G Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSDAETEKLAQKLYERIQSG 321 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L E + + + +G+ + FG+ Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + F+E + + +R K E+++ +++ + Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 104/321 (32%), Gaps = 42/321 (13%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167 RV + + + ++ +V + L R + + + L ++ Sbjct: 28 VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87 Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G+R S+ L+QA + + ++A R Sbjct: 88 IGDRSGIRISDEELNQAMATIAQRNGMSLEQFQAALTRDGLSYADA-------------R 134 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282 + + ++I++S E++ + K E + ++ P + Sbjct: 135 DQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194 Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 A E +Q LK+G F QLA + +L +G +P I Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382 SLA GD T + G++I + + + EV +I + K ++ Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSDAETEKLAQ 312 Query: 383 KVKEDYKRLEEFLALGTSMDE 403 K+ E + E+F L S E Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333 >gi|320333920|ref|YP_004170631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus maricopensis DSM 21211] gi|319755209|gb|ADV66966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus maricopensis DSM 21211] Length = 639 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 122/410 (29%), Gaps = 103/410 (25%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA------LFSVSGSSTVVSVGRQKVPFS 54 ML+ + ++ + ++ L+VL V ++ ++ L + + V V + Sbjct: 1 MLQGGIQVNQKALVRVLLIVLAVMLVLGMVASFTPLLGNLGGQNKGNPAVKVNGTVITDQ 60 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + + + +G + I+++ V L Q D + Sbjct: 61 DLES-----VRRGNPVLGLTQDGVLGDDF--KTAIVESKVQETLLKQGASDQ--QVSRAE 111 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V +++ + S+ +V RL + G + + + L+ + Sbjct: 112 VNDAVSK---LREQLGLKSNKEWVDRLQQYGFTDASFREAQRTQLAWQKKLKALQ----- 163 Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234 P+ A L ++ + D +++ Sbjct: 164 --------------------------DATPKGTPAEAQL--YYTLHPDEFKS-------- 187 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 Q+ ++ +A + K G Sbjct: 188 --------------------------------EARIVGRQIAVSSEAKAKQLLAQAKGGA 215 Query: 295 KFIQLA-------EEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 F +LA +++G +L I G +K +P + ++ F+L + G T V+ Sbjct: 216 DFAKLASENSTVNKDRGGALGPIENGEPKPVAKITLP-AEVGEAAFALTQGG-LTDVVKS 273 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + I V P+ T F+ V+ + + K V+ Y L Sbjct: 274 GDKFYIVKVERFVPASTQPFEAVRSKAIDAVTKQKQDAAVEAWYTDLRNK 323 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 79/209 (37%), Gaps = 13/209 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298 + ++I++ +++ Y+KN Y +P + ++ F ++++A + K Sbjct: 421 AYGARDVKITDAQVRDAYQKNISAYRTPASANISEISFASREKALAFRTAFAASPKNLSS 480 Query: 299 LAEEQGKS---LSDISLGSFSKEYIPD--VSLADSIFSLAK-----KGDFTPVIHGSFGY 348 A G + L + G + P L +++ + +G + V+ + + Sbjct: 481 SAARAGGTVNELGTVQQGQADQSGQPKLNPLLDKAVYDAGRLEPAGEGSLSDVVEVNGRF 540 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI--SR 406 +A+V ++ T EV + + ++ + + + L + S+D++ ++ Sbjct: 541 SLAYVRDLVRGSTKPLSEVSDQVRETLLQEARTQAGQAYLQAQLKGLKITKSLDKVLAAQ 600 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +++ + G G P Sbjct: 601 EKRVAAQAPKTTPAGGTGTSGAAQGTTPA 629 Score = 45.8 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 41/154 (26%), Gaps = 1/154 (0%) Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 F A ++ + R +L V D G+ + + + Sbjct: 471 FAASPKNLSSSAARAGGTVNELGTVQQGQADQSGQPKLNPLLDKAVYDAGRLEPAGEGSL 530 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 V +G + +++ + + L EV V++ + + Q L+ K Sbjct: 531 SDVVEVNGRFSLAYVRDLVRGSTKPLSEVSDQVRETLLQEARTQAGQAYL-QAQLKGLKI 589 Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K+ + + G Sbjct: 590 TKSLDKVLAAQEKRVAAQAPKTTPAGGTGTSGAA 623 >gi|203287575|ref|YP_002222590.1| basic membrane protein [Borrelia recurrentis A1] gi|201084795|gb|ACH94369.1| basic membrane protein [Borrelia recurrentis A1] Length = 336 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 124/410 (30%), Gaps = 99/410 (24%) Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 F+ FL++ + + V+ + + + + F + + + + G +++ Sbjct: 4 FLCFLLFCVLGITSFAQNTPVVI-INLHSNEIITKTEFDSK----VNTLKKTQGRDLSNI 58 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 K++L L++ Q G++ V I + + Sbjct: 59 E------KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRS----QFGLASLTDEQIK 108 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + +G N E + + L+ +V + + Sbjct: 109 QMIESQGTNWNELLASMKRSLAAQKLV-----------------------------LKIA 139 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 I PS + +++E K + P+ RIS++ F +K++ + Sbjct: 140 QPKFSEIKAPSEKEVIEYYEANKTKFVNPDIARISHVFFSAKDKKRSEVL---------- 189 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD----ISLG 313 ++A + + +K K F + + LG Sbjct: 190 ----------------------EQAKDIAKQIKSSKITFEEAVRKYSNDEGSKVKNGDLG 227 Query: 314 SFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-- 366 ++ + +F L KKG+ + I G+ I V+ + + Q+ Sbjct: 228 FLARGDQSAQNVLGADFIKEVFVL-KKGNVSNPISSKEGFHIVKVTEMYSQKFLGLQDKI 286 Query: 367 -------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 VK I N M + V + + + + L S+ + K Sbjct: 287 SPNVNMTVKDAIKNNMINVHQQQIVAKIQQEIYDKLNKSASIQILDSSLK 336 >gi|194018008|ref|ZP_03056615.1| YacD [Bacillus pumilus ATCC 7061] gi|194010345|gb|EDW19920.1| YacD [Bacillus pumilus ATCC 7061] Length = 302 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 115/392 (29%), Gaps = 120/392 (30%) Query: 5 IRKASRTWVAKIFLVV----LFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 +R +R I +++ + + +++ +S A + + S+G++KV ++ Sbjct: 1 MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLK 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + G K L+ +++ +DQ ++ LE + E Sbjct: 61 KMEDRYG---------------------KATLEQMINQKVVDQLAKENKLEVSSKEINRE 99 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + + N F D +EK++ + + ++ Sbjct: 100 LL---MLKAVSNNFYEDG--------HTSEKDWTEQIRYQILLEQLL------------- 135 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 R A S ++EK KD Y+ Sbjct: 136 ----------TRD--------------AVVSEKEAKSFYEKNKDLYQ------------- 158 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 Y+ + + +V + EA+ + LK G F Sbjct: 159 ------------------YDDSY---------RIRHIVVKTKGEAENVLKDLKGGSSFEA 191 Query: 299 LAEEQG----KSLSDISLGSFSKEYIPDVSL-ADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A E+ S LG ++E +L L I GY I + Sbjct: 192 VAAERSIDRYTSPYGGDLGFVTEEQESIPALYIQEAQKLQPDQWTKEPIETKNGYAIIQL 251 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 + S++EVK I Q+ + EK Sbjct: 252 KEKLDGRSFSYEEVKNQIKRQIAMEDLGEKAN 283 >gi|288575146|ref|ZP_06393503.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570887|gb|EFC92444.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 350 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 54/402 (13%), Positives = 127/402 (31%), Gaps = 92/402 (22%) Query: 1 MLEIIRKASRTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 ML +R + + L V+ G + S + V + +K+ S + Sbjct: 1 MLRTLRTQVKWILVFFLLCFVLAIPLMYGVGGGKSSRSSNEDYAVAEIDGKKLMRSQLLR 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 S + + + + + + +LD +V L + ++ +G+ + Sbjct: 61 SVQDYVERA-----GIKDVTSTDLPMIRQMVLDQMVVQEALLKEVKALGITPSKEELDQA 115 Query: 119 IARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++ +++F + + F+ L GI + + LS+ ++ Sbjct: 116 VSGI------EDQFPTKEAFMQYLQETGITMNDLREQLKTQLSQQMLL------------ 157 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYIL 236 A A ++ L ++ KD + PE + Sbjct: 158 ----------------------EEASAAAKVNDEELQALYDSVKDFVFTVPEGFEVLAAE 195 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 F +Q+ A++A++ L G + Sbjct: 196 ----------------------------------------FSSQEAANKAYEELSSGTSW 215 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHG-SFGYVIAHV 353 + EE S S GS ++ SL +++ +A G + + S +++ + Sbjct: 216 DVVLEEFSSSDITGSTGSEKPAFLKKDSLPENLAFIASMDDGQYAEPVEVASDDFIVVYR 275 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + K SF++ K+ + + + K E + + E + Sbjct: 276 KSAKDREVTSFEDAKEQLQSMVLNQKRQELQRTFLDEISEKV 317 >gi|56479153|ref|YP_160742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] gi|56315196|emb|CAI09841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum aromaticum EbN1] Length = 260 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + K ++ +L+ EYE K + S E + ++ ++EA L+ G+KF Sbjct: 104 MQDFVKTNPATDADLRKEYESIKGQMGSKEYKP-RHILVETEEEAKAIIGKLRAGEKFEA 162 Query: 299 LA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA ++ G LG + ++++ L K + FGY + + + Sbjct: 163 LATASKDPGSKDKGGELGWSNPGMFVKP-FSEAMVKLEKGQYSATPVKSDFGYHVIQLDD 221 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 ++ +F+EVK + +++ K + V + + + Sbjct: 222 VRDLKAPAFEEVKPQLEQRLQQKKIEKHVADLRAKAK 258 Score = 41.1 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 39/120 (32%), Gaps = 1/120 (0%) Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 E +A ++ + + G+ F + + F + Sbjct: 142 ETEEEAKAIIGKL-RAGEKFEALATASKDPGSKDKGGELGWSNPGMFVKPFSEAMVKLEK 200 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P+++ Y V ++ + + ++ L Q + + ++ +A L+++ V Sbjct: 201 GQYSATPVKSDFGYHVIQLDDVRDLKAPAFEEVKPQLEQRLQQKKIEKHVADLRAKAKVE 260 >gi|209965938|ref|YP_002298853.1| peptidyl-prolyl cis-trans isomerase family protein, putative [Rhodospirillum centenum SW] gi|209959404|gb|ACJ00041.1| peptidyl-prolyl cis-trans isomerase family protein, putative [Rhodospirillum centenum SW] Length = 315 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 91/241 (37%), Gaps = 18/241 (7%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 K + RT+V+ L + V+ ++ + V Sbjct: 56 KEIRRTEVLAALQQLPPQVQQLPLPMVYPAVLEQVVNAHLVTQAGFKDKLQDTTEV---- 111 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 K +A E + + K +S+ ++ ++++ ++ + ++ Sbjct: 112 ----KQRLKAAEERFVQEAFLKKAIDAK---MSDALVKKKFDEWLKENPPQDEVRARHIL 164 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSL 332 ++EA+ + +K G F +LA +Q + LG F+K+ + + A + F++ Sbjct: 165 VQTKEEAEALIKQIKGGADFNKLAADQKIDTAAAQQQGDLGYFTKDQMVEP-FAKAAFAM 223 Query: 333 AKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K GD + + FG+ + V + + +++E ++ + A + V+ K+ Sbjct: 224 -KPGDVSQTPVETQFGWHVIKVEDKRKQTPPTYEEAAPELRQVVAQDIAGDVVEGLRKQA 282 Query: 392 E 392 + Sbjct: 283 K 283 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 6/137 (4%) Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-EN 541 +V+ V+T EE + +++ K G +F + + Q + Sbjct: 155 QDEVRARHILVQTKEEA-----EALIKQIKGGADFNKLAADQKIDTAAAQQQGDLGYFTK 209 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 F+ V P+E + V KV + + ++ L Q++ +D Sbjct: 210 DQMVEPFAKAAFAMKPGDVSQTPVETQFGWHVIKVEDKRKQTPPTYEEAAPELRQVVAQD 269 Query: 602 LLDSVIAYLKSQYSVTV 618 + V+ L+ Q V + Sbjct: 270 IAGDVVEGLRKQAKVEM 286 >gi|170703395|ref|ZP_02894173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria IOP40-10] gi|170131694|gb|EDT00244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria IOP40-10] Length = 260 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + + E++A Y++ + + ++ ++++A + +K G KF L Sbjct: 103 ESFLKKNQPTEAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA Q+ K Sbjct: 223 RDVAPPPFDQVKAQIAQQLVQQKLQ 247 Score = 40.4 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D ++ K + + + Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + + + + D+ + + Q + + L + L+ Q + Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260 >gi|303327130|ref|ZP_07357572.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio sp. 3_1_syn3] gi|302863118|gb|EFL86050.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio sp. 3_1_syn3] Length = 312 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 54/387 (13%), Positives = 113/387 (29%), Gaps = 91/387 (23%) Query: 15 KIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 K F+++L + F G+ A + V Q + + ELG + Sbjct: 3 KTFILLLAIWFCGVCGVQAAQL----NKVAAVVNGQVITMFDLQKTALPELGRAR--LNP 56 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 ++ + +K+LD ++ L Q + + + V E+ + Sbjct: 57 NNPAQAKEVEKVFRKVLDMMIMDILLGQEAKRLKISVSPSEVDNELVKMMKARNLT---- 112 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 F ++LA++ I+ E ++ K L R ++GM Sbjct: 113 KQQFEAQLAQQKISIDEIRQNFEKSLLRQKIMGM-------------------------- 146 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 V + A + ++E +KDN Sbjct: 147 -------EVGRKVVVTPAEIKAYYEAHKDNL----------------------------- 170 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312 Y+++ LV+ A +K GK F + A + + + Sbjct: 171 ---YDRSGLHMGV--------LVYAPNVNAKSIAAQIKSGKLSFEEAAAKYSIAPNKDKG 219 Query: 313 GSFS--KEYIPDVSLADSIFSLAKKGDFTPVIHGSF---GYVIAHVSNIKPSFTVSFQEV 367 G + + + + K GD T + + ++ ++ Sbjct: 220 GDMGPVEWDRLNPEWEGRLIKM-KPGDVTDIFDLQGRKAQVHLFRPGGDNAEKQLTLEQA 278 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394 I +R KA E+ ++ +L Sbjct: 279 TPQIDAILRQPKAMERFEDYTSQLRNK 305 >gi|157690854|ref|YP_001485316.1| peptidylprolyl isomerase [Bacillus pumilus SAFR-032] gi|157679612|gb|ABV60756.1| possible peptidylprolyl isomerase [Bacillus pumilus SAFR-032] Length = 302 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 120/392 (30%) Query: 5 IRKASRTWVAKIFLVV----LFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 +R +R I +++ + + +++ +S A + + S+G++KV ++ Sbjct: 1 MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLK 60 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 + G K L+ +++ ++Q ++ LE + E Sbjct: 61 KMEDRYG---------------------KATLEQMINQKVVNQLAKENKLEVSSKEINRE 99 Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + + N F D +EK++ + + ++ Sbjct: 100 LL---MLKAVSNNFYEDG--------HTSEKDWTEQIRYQILLEQLL------------- 135 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 R A S ++EK KD Y+ Sbjct: 136 ----------TRD--------------AVVSEKEAKSFYEKNKDLYQ------------- 158 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 Y+ + + +V + EA+ + LK G F Sbjct: 159 ------------------YDDSY---------RIRHIVVKTKGEAENVLKDLKGGSSFEA 191 Query: 299 LAEEQG----KSLSDISLGSFSKEYIPDVSL-ADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A E+ S LG ++E +L L I GY I + Sbjct: 192 VAAERSIDRYTSPYGGDLGFVTEEQESIPALYIQEAQKLQPDEWTKEPIETKNGYAIIQL 251 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 + S++EVK I Q+ + EK Sbjct: 252 KEKLDGRSFSYEEVKNQIKRQIAMEDLGEKAN 283 >gi|317128176|ref|YP_004094458.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cellulosilyticus DSM 2522] gi|315473124|gb|ADU29727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cellulosilyticus DSM 2522] Length = 293 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 14/148 (9%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ--- 303 + ++++LQ YEK E ++ ++EA + ++ ++ G+ F LA++ Sbjct: 137 DPTDEDLQELYEK-------GEEVEASHILVYTEEEALDIYERIENGEDFATLAQDYSED 189 Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G + LG F + + + F+L + + + FGY I V++ P F Sbjct: 190 GSASQGGQLGYFGRGAMV-APFEVAAFNL-DVNEVSSPVESQFGYHIIKVTDRLP-FEAP 246 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 F+EV+ + + K K+ + L Sbjct: 247 FEEVRYMLEDTFNSQKV-NKMMDAQDEL 273 >gi|292493615|ref|YP_003529054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] gi|291582210|gb|ADE16667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus halophilus Nc4] Length = 320 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 14/158 (8%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQ-SLKKGKKFIQLA 300 + Y+ N+E+Y PE V ++ ++ A++ + +L + K F +LA Sbjct: 131 EALARERYQANQEQYQLPEQVKVSHILIKAEERSEEEARQLAEKVRKLALAEEKPFAELA 190 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 E + S LG ++ ++ F+L + G+ +PV+ FG+ I + Sbjct: 191 VEYSEDPSVERNQGDLGFIARGKTVKP-FEEAAFALKQPGNISPVVKSRFGFHIIRLEER 249 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 +P+ F +VK+ + + + T ++ V+ ++ Sbjct: 250 QPAQVQPFDQVKEKLVQEAKETYLNKVVQTHLNQIRNA 287 >gi|209517935|ref|ZP_03266768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] gi|209501651|gb|EEA01674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] Length = 265 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 5/170 (2%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 +A I + + + KK +S+D+L+A Y + K K S E + V ++ ++ EA Sbjct: 95 QAQATWEIEIVRAYMQDFLKKNPVSDDQLKAMYNEMKSKGGSTEYK-VRHILVKDEGEAK 153 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + L KG F LA+E S S LG + + AD++ L K Sbjct: 154 DIIARLNKGASFGDLAKESIDSDSRYNGGDLGWKTSSKVVKP-FADAVSHLHKGEYTQTP 212 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +G+ + V + + SF+E+K + Q + VK + Sbjct: 213 VKTGYGFHVIEVDDTRALQVPSFEEMKPMLYQQAQEELVDRMVKNLRAKA 262 >gi|228932540|ref|ZP_04095421.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827230|gb|EEM72983.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 285 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 30/206 (14%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVH 240 Y ++ + S + + +K K Y + + Sbjct: 57 YEMMAQDVITKKYKVSEDDVEKEVQKAKSQYGDQFKNILKNNGLKDEADFKNQIKFKLAM 116 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K ++ +++A Y+ PEI+ ++ ++ EA E + L G F +LA Sbjct: 117 NEAIKKSVTEKDVKAHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEELA 167 Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +++ + L LG F+ + + + L G + + GY I +++ Sbjct: 168 KQESQDLLSKEKGGDLGYFNSGRMA-PEFETAAYKL-NVGQISNPVKSPNGYHIIKLTDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + + Sbjct: 226 KE--LQPYDEVKDSIRKNLEEERIAN 249 Score = 37.3 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 48/131 (36%), Gaps = 10/131 (7%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 +VK +++ + + + K +++ L G S +E++++E + G Sbjct: 128 DVKAHYKPEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFN 187 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ + + + + + Y +++ + + +EV Sbjct: 188 SGR------MAPEFETAAYKLNVGQISNPVKS--PNGYHIIKLTDKKE--LQPYDEVKDS 237 Query: 486 VKKDWKTVKTA 496 ++K+ + + A Sbjct: 238 IRKNLEEERIA 248 >gi|206967650|ref|ZP_03228606.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH1134] gi|206736570|gb|EDZ53717.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH1134] Length = 289 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 39/246 (15%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ D + + M + + K + E++ VD Sbjct: 35 ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77 Query: 206 ADPSNAVLTQWFEKY----KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + + Q+ +++ K E + EK + I++ +++A++E K Sbjct: 78 ----DEMKKQYGDQFDTLLKQQGIKEETIKTGVRAQLAQEKAVEQSITDKDVKAKFEDYK 133 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 ++ ++ +++ A + L +GK F +LA++ + LG F Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + ++ L KKG+ + + FGY I V++ F + K DI + Sbjct: 188 GKMVK-EFEEAAQKL-KKGEVSEPVKTQFGYHIIKVTDNHADAN--FDKAKTDIKKSLVQ 243 Query: 378 TKASEK 383 K + Sbjct: 244 EKTQDA 249 >gi|229016342|ref|ZP_04173287.1| Foldase protein prsA 1 [Bacillus cereus AH1273] gi|229022583|ref|ZP_04179110.1| Foldase protein prsA 1 [Bacillus cereus AH1272] gi|228738710|gb|EEL89179.1| Foldase protein prsA 1 [Bacillus cereus AH1272] gi|228744934|gb|EEL94991.1| Foldase protein prsA 1 [Bacillus cereus AH1273] Length = 286 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 87/243 (35%), Gaps = 33/243 (13%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ + + + M + E + ++++ V Sbjct: 36 ITKEEFYNQMKTQAGKQVLNNMVM------------------EKVLIKNYKVDDKEVDKK 77 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 D + F+ K E + E+ + I++ +L+A+YE K Sbjct: 78 YDEMKKQVGDQFDTLLKQQGLKEETVKNGVRASLAQEQAIEKSITDKDLKAKYEDYK--- 134 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 + ++ +++ A + + L +GK F +LA++ + LG F + + Sbjct: 135 ---QEIKASHILVKDEETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKM 191 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 ++ L KK + + + GY I V++ +F + K DI ++ K Sbjct: 192 VK-EFDEAARKL-KKDEVSEPVKTQHGYHIIKVTDTHAD--KTFDQAKADIKKEVVQEKT 247 Query: 381 SEK 383 + Sbjct: 248 QDA 250 Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 43/222 (19%) Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KE D+ + +KK G +F L ++QG + G + SLA++ Sbjct: 70 DDKEVDKKYDEMKKQVGDQFDTLLKQQGLKEETVKNGVRA--------------SLAQEQ 115 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 K + +D +++ + K +E K+++E LA Sbjct: 116 AI-----------------EKSITDKDLKAKYEDYKQEIKASHILVKDEETAKKVKEELA 158 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G S +E++++ G K V + L + + ++ Sbjct: 159 QGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKLKKDEVSEPVKTQ---- 214 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 Y +++ ++ D+ ++ D+KK+ KT + Sbjct: 215 ----HGYHIIKVTDTH--ADKTFDQAKADIKKEVVQEKTQDA 250 >gi|124266954|ref|YP_001020958.1| putative exported isomerase [Methylibium petroleiphilum PM1] gi|124259729|gb|ABM94723.1| putative exported isomerase [Methylibium petroleiphilum PM1] Length = 272 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +KK +++ E+QAEY+K K + E R V ++ + EA ++ G F + Sbjct: 112 ADFQKKNPVTDAEVQAEYDKYKAQAGDKEYR-VRHILVETEDEAKALIAQIQGGASFEET 170 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G P ++++ L K I +G+ I + ++ Sbjct: 171 AKKSSKDPGSAPNGGDLDWAAPGSFVPEFSNAMVKLEKGKMTEAPIKSQYGFHILKLEDV 230 Query: 357 KPSFTVSFQEVKKDIANQMRITKA 380 + + EVK I ++ K Sbjct: 231 RDAQFPPLAEVKPQIEQRLSQQKV 254 >gi|203284033|ref|YP_002221773.1| basic membrane protein [Borrelia duttonii Ly] gi|201083476|gb|ACH93067.1| basic membrane protein [Borrelia duttonii Ly] Length = 336 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 124/410 (30%), Gaps = 99/410 (24%) Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 F+ FL++ + + V+ + + + + F + + + + G +++ Sbjct: 4 FLCFLLFCVLGITSFAQNTPVVI-INLHSNEIITKTEFESK----VNTLKKTQGRDLSNI 58 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 K++L L++ Q G++ V I + + Sbjct: 59 E------KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRS----QFGLASLTDEQIK 108 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + +G N E + + L+ +V + + Sbjct: 109 QMIESQGTNWNELLASMKRSLAAQKLV-----------------------------LKIA 139 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 I PS + +++E K + P+ RIS++ F +K++ + Sbjct: 140 QPKFSEIKAPSEKEVIEYYEANKTKFVNPDIARISHVFFSAKDKKRSEVL---------- 189 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSD----ISLG 313 ++A + + +K K F + + LG Sbjct: 190 ----------------------EQAKDIAKQIKSSKITFEEAVRKYSNDEGSKVKNGDLG 227 Query: 314 SFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-- 366 ++ + +F L KKG+ + I G+ I V+ + + Q+ Sbjct: 228 FLARGDQSAQNVLGADFIKEVFVL-KKGNVSNPISSKEGFHIVKVTEMYSQKFLGLQDKI 286 Query: 367 -------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 VK I N M + V + + + + L S+ + K Sbjct: 287 SPNVNMTVKDAIKNNMINVHQQQIVAKIQQEIYDKLNKSASIQILDSSLK 336 >gi|121956444|sp|Q4ZMG7|SURA_PSEU2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 428 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 132/423 (31%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 19 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ + + + + Sbjct: 74 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V + L D K E + I++ + A Sbjct: 130 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSDAIQAAA 189 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 190 VKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 249 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A + + ++ Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQKIYDRIE 309 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + S +G + +G Sbjct: 310 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGVLSKPFQTQYG 367 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 368 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425 Query: 407 REK 409 + Sbjct: 426 AAQ 428 >gi|307718672|ref|YP_003874204.1| basic membrane protein [Spirochaeta thermophila DSM 6192] gi|306532397|gb|ADN01931.1| basic membrane protein [Spirochaeta thermophila DSM 6192] Length = 346 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 129/402 (32%), Gaps = 84/402 (20%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIG 72 KI L V+ + LF G V R K+ +K ++ ++ +++G Sbjct: 5 KIVLGVVVMG---------LFPAFGQIIDAPVARVKLTKLEVITQRQFKADVELLEKQLG 55 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++ E K++LD + + Q E L + IA+ Sbjct: 56 RELSLEE------RKQLLDARIGEILIYQAAEREYLSVTQEELSQAIAQYK--QSVAPNV 107 Query: 133 SHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 S F + +G + +++ + K L A+++ ++ Sbjct: 108 SDQEFQRLIESQGGMTWEQFQEQMKKRLI---------------------AEKYLYQK-- 144 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + + + PS + + + + N+ APE R S+I D S++ Sbjct: 145 ------KGQEIQNVPAPSEEEIRRVYNENISNFTAPEMVRYSHIFIDTRGL------SDE 192 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK---KFIQLAEEQGKSLS 308 E + Y + +KE D + ++ Q + QG + Sbjct: 193 EKKKAYNR----------------ALQVKKEVDGSLAKFREAVEKYSDDQASRYQGGDVG 236 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV------ 362 + +E IFSL + V+ + GY I V+ + Sbjct: 237 YLLRTDKQRESFLGKEFFSKIFSLPLN-KVSDVLASNVGYHIVVVTEHHEPRLLGLDDRL 295 Query: 363 ---SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 S Q V+ I + K E ++ ++L E L + Sbjct: 296 LPNSKQTVRDQITALLVGQKRQEAYQKALQKLIEELRSQADV 337 >gi|260171516|ref|ZP_05757928.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2] gi|315919830|ref|ZP_07916070.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693705|gb|EFS30540.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 713 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 96/722 (13%), Positives = 212/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWTFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R V YI + + + D + A L + Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDVKYIDVQVTASAEDRAAIQKEVDEATAQLATTTDDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEY-------EKNKEKYFSP------ 267 Y+ ++ ++ + + A Y + + Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGAIYGPYYNGADNTINSFKVVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F +A++ G + I+ + Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADVAKKYGQTGDANWITSAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + +L S +++ G VI V+N K V I ++ Sbjct: 418 VDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWTFDKAKPGDVSGLYECGESDHLMVVGLVSIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K D+ + SL + S Sbjct: 589 EKIMADMKAANATSFNQYK---DMANAVSDSLKMVTFAAPAYVSALRSSEPLVGAYASVA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 E PI+ V +V K+ + + LT M + + ++ L + + Sbjct: 646 PENQLSAPIKGNAGVFVLQVYGRDKLNETFDAKAEEATLTNMHAR-FANRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|237803361|ref|ZP_04590946.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025342|gb|EGI05398.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 440 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 61/377 (16%), Positives = 108/377 (28%), Gaps = 85/377 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + S E+ K G V A L K++LD L+ Sbjct: 31 DSVAAIVDNDVIMKSQVDQRVH-EVQQTIAKRGSGVPPAEA----LQKQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + IA + N S + F + L +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIASI----AQRNNMSVEQFRAALIHDGVSYDDAREQVRREM 141 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + V + R V S + + Sbjct: 142 IISRV----------------------RQRR-----------VAERIQVSEQEVKNFLAS 168 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + E ++ IL + I L+ Sbjct: 169 DQGKAQLSEEFHLANILIATPDSASSDVIQAAALK------------------------- 203 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 A + KKG F +LA +L +G +P D + S+ G Sbjct: 204 ---AKSIYDQAKKGADFAKLAATTSSSENALEGGDMGWRKAAQLP-PPFGDMLSSMP-IG 258 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVK--------KDIANQMRITKASEKVKE 386 D TP G++I + + + EV +I ++ ++K+ E Sbjct: 259 DVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYE 318 Query: 387 DYKRLEEFLALGTSMDE 403 + E+F AL S E Sbjct: 319 RIENGEDFAALAKSFSE 335 >gi|222094778|ref|YP_002528838.1| peptidylprolyl isomerase [Bacillus cereus Q1] gi|221238836|gb|ACM11546.1| protein export protein prsa [Bacillus cereus Q1] Length = 286 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 17/208 (8%) Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRA 226 F M+ S E + + ++ V D + F+ K Sbjct: 40 FYEQMKNSPTGKQTLNNMVLEKVLIKNYKVEDKDVDKKYDEMKKQIGDQFDTLLKQPGVT 99 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + + S EK + I++ E++ Y+ PEI+ ++ ++ A + Sbjct: 100 EKTLKNSVRAQLAQEKAVEQAITDKEVKDYYK--------PEIK-ASHILVKDEATAKKV 150 Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + L +GK F +LA++ + LG F + D+ + L KK + + + Sbjct: 151 KEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEDAAYKL-KKDEVSEPV 208 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 FGY I V++IK SF++ K D Sbjct: 209 KSQFGYHIIKVTDIKEPE-KSFEQSKAD 235 >gi|330878394|gb|EGH12543.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963847|gb|EGH64107.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 440 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 53/423 (12%), Positives = 136/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V + L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LA +G++ + + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYNDAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V ++ S + DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + I + Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291 + EK + + + V ++ + A + ++ ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G +L+ L + D + S +G+ + ++G Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + + A + +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|302130724|ref|ZP_07256714.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 440 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V + L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V ++ S + DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + I + Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291 + EK + + + V ++ + A + ++ ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G +L+ L + D + S +G+ + ++G Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + + A + +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|313672046|ref|YP_004050157.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] gi|312938802|gb|ADR17994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio nitroreducens DSM 19672] Length = 345 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 80/170 (47%), Gaps = 2/170 (1%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + + +++ F + + +I+IS +EL+A YE+ + S + Q+V ++ Sbjct: 152 EKFEKLMEEKLLAQKFLEDKIKSEIKISEEELRAYYEEFIKTKQSKVYYHIYQIVNEDKH 211 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTP 340 + +EA++ LK GK+F +A+E + G I + + D + +L K + + Sbjct: 212 KIEEAYKLLKSGKRFEDVAKEYSSGPEAENGGDMGIVDIENFPPVFDLVKNL-KPNEISK 270 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 ++ +GY I + S SF+E+K + +++ K + ++ K Sbjct: 271 IVSSEYGYHIIMLKETISSDKPSFEEIKDLLLDELIAEKKDQYLENYLKE 320 Score = 38.8 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 505 QLVLEYSKEGKNFRDIGKNL--GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562 + + K GK F D+ K G + +D EN +D + + P E+ K Sbjct: 214 EEAYKLLKSGKRFEDVAKEYSSGPEAENGGDMGIVDIENFPPVFDLVKNL--KPNEISKI 271 Query: 563 FPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 E G ++ K T S P + KD + L L++ + V + Sbjct: 272 VSSEYGYHIIMLKETISSDKPSFEEIKDLLLDELIAEKKDQYLENYLKEKMKDVKVEISP 331 Query: 621 NL 622 + Sbjct: 332 DF 333 >gi|224827238|ref|ZP_03700332.1| SurA domain protein [Lutiella nitroferrum 2002] gi|224600527|gb|EEG06716.1| SurA domain protein [Lutiella nitroferrum 2002] Length = 428 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 50/412 (12%), Positives = 130/412 (31%), Gaps = 60/412 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S K+ + + + + L +++L+ +++ Sbjct: 28 DRIVAVVNKSAITESDLQKRIKETVMELEARKVTPPAPDV-----LARQVLEQMITEEVQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q+ G+ + + R NK + + ++LA+EG+ + + + + Sbjct: 83 VQYATSNGVRVSDDELQQTLERLAS----QNKLTLEAMKAQLAKEGVTFDNFREQIRRQI 138 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRF-YFENRS--------------VDYIVLNNRHVP 203 + + + S+ ++Q + NRS D ++ + Sbjct: 139 LLSRLKEREVESRVNVSDTEVEQVLKSEQTANRSEYRLANILVSVPERADAKQIDAQSQK 198 Query: 204 AIADPSN-------AVLTQWFEKYKDNYRAPEY--KRISYILFDVHEKEKKIEI------ 248 A + A + + + + + + S + D + + ++ Sbjct: 199 AHKALAELDAGQPFAKVAAAYSDAPNGLKGGDLGWRPASSLPLDFTKLLETMQPGSHTTV 258 Query: 249 --SNDELQAEYEKNKEKYFSP---EIRTVEQLVFPNQKEADEA---------FQSLKKGK 294 S + K +P E V ++ + EA +++G Sbjct: 259 IRSQQGFFIFQLQEKRSADTPLIVEQYHVRHILLRTNEAVSEADAKTRLLQIRDRIERGA 318 Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F ++A+ + S LG + + ++ SL + + FG+ + Sbjct: 319 SFEEMAKLYSEDASNTRGGDLGWVNLGDTV-PTFEQAMTSLPLN-TVSQPVRSPFGWHLI 376 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V + K + Q+R K E + ++L + + ++E Sbjct: 377 KVEGKRTQDVAQ-DREKMMVKQQIRARKIDEAYLDWVRQLRDSAFVDDRLEE 427 >gi|328949546|ref|YP_004366881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus hydrothermalis DSM 14884] gi|328449870|gb|AEB10771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus hydrothermalis DSM 14884] Length = 611 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 95/655 (14%), Positives = 186/655 (28%), Gaps = 142/655 (21%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMIS 68 + +L V F + + LF+ G+ TV+ V + V + EL + Sbjct: 8 ITVIFGILAVAFALGTI--FLFTPQGNPQQEGRTVLWVNGEPV--------RELELARLQ 57 Query: 69 QKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 Q F +N E A +D L+ ++ L Q + + +V ++ + Sbjct: 58 QTTPLFALNPEGALKPLIDTYFLEQVILLKALAQDAAR--VRVSNSKVRQQVDQI---RE 112 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + + + L + G + D L + Sbjct: 113 RFGLETRQDYSDFLQQIGYTDATLRDEIRTQLRINKRLEQIR------------------ 154 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247 + S +F +KD YR Sbjct: 155 ----------------EQVELSEEEARFYFTLHKDTYRT--------------------- 177 Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-- 305 + Q+V ++ A E + G++F LA E K Sbjct: 178 -------------------EDRIKARQIVVDDEALARELRERTLAGEEFAALAREYSKVA 218 Query: 306 SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + ++G+ + P +AD+ F+L K+G T VI Y + V Sbjct: 219 AEQGGAVGAEAGSDEPQPVTRIVFPKPVADAAFAL-KEGGLTDVIEAGGRYHLVQVEAFL 277 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE----------------EFLALGTSM 401 P SF+EV + K + V++ + + + + Sbjct: 278 PGGDASFEEVADAVRADALAAKQRQAVEDYLEAVRARATVKFADLNLFQYVNPVVATVNG 337 Query: 402 DEI----SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR-VFGKDDPLSKDHTV 456 +EI +P + G + +QL+ R + ++ S V Sbjct: 338 EEIPLRKVAELVFSDQQVPQLIQQGLGQLAVQFFFPASLDQLIARTLLLQEAEKSGQPFV 397 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLT--------DVKKDWKTVKTAEEVSSKANQLVL 508 + V++ +++ + EEV T V VK ++ + Sbjct: 398 GTQEERARDVRLWKTLDVTVSE-EEVRTFYNENPQRFVIPASAQVKAVTFQDKESAETFR 456 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV--FSGPVEMVKCFPIE 566 EG+ D+ + LG ++ +N S+ P V Sbjct: 457 ARLIEGEALEDLAQELGGEVVDYGTVNPRQLPPVLDQLIFFSEATFAESPEGKVSELIEL 516 Query: 567 NGLSYVVFKVTNSKVG---PVQEKDKFISYLT-QMMNKDLLDSVIAYLKSQYSVT 617 ++ V V + K P +E L + + + L+ + Sbjct: 517 EDGTFQVALVNDQKPEVLRPFEEVQDEARALALAQKRNRIANEWLDELRENAQIE 571 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 8/190 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + +S +E++ Y +N +++ P V+ + F +++ A+ L +G+ LA+E G Sbjct: 414 DVTVSEEEVRTFYNENPQRFVIPASAQVKAVTFQDKESAETFRARLIEGEALEDLAQELG 473 Query: 305 KSLSDISLGSFSKEYIPDV-----SLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKP 358 + + G+ + +P V +++ F+ + +G + +I G + +A V++ KP Sbjct: 474 GEV--VDYGTVNPRQLPPVLDQLIFFSEATFAESPEGKVSELIELEDGTFQVALVNDQKP 531 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 F+EV+ + K + E L E + + E+ + + Sbjct: 532 EVLRPFEEVQDEARALALAQKRNRIANEWLDELRENAQIENRLTEVLAELAPPAEEANES 591 Query: 419 DFAGKDVKGK 428 + G+ Sbjct: 592 NGEGETAPAP 601 >gi|257464029|ref|ZP_05628414.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D12] gi|317061550|ref|ZP_07926035.1| predicted protein [Fusobacterium sp. D12] gi|313687226|gb|EFS24061.1| predicted protein [Fusobacterium sp. D12] Length = 549 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 81/568 (14%), Positives = 192/568 (33%), Gaps = 87/568 (15%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFSSFI 57 IRK + + K + V+ + + G+ S + + +K+ Sbjct: 2 AIRKFRK--MMKPVIFVVAIAMIGSGVWLTFTNLLQHRSAGETQYAYQLNGEKISKIKIA 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 L +++ G S+ S+ +++ Q ED+ ++ V Sbjct: 60 REENALLDQLNKM-GQGKTSKDLISL----IAFQKVINDELTLQLAEDMKIKVPSSEVKE 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-------- 169 E + +++ + + F L+ +G ++K + + L V+ F Sbjct: 115 EYEKI-----EESIGNKEQFRRMLSVQGYSKKSFQAMLQENLLLQKVMEKFEEEGKKAGK 169 Query: 170 -GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQW---------- 216 G + L + E + +Y L + V +N + Sbjct: 170 DGNLLYQEALAKKRNEMKLEKLAPEYEKLQMKVVEEKDGFKITNVDMADRVTQLMLMTGE 229 Query: 217 ------------FEKYKDNYRAPEYKRI-------------SYILFDVHEKEKKIEISND 251 FE+ + + + + Y + + ++++ Sbjct: 230 EETKVTEEVKKQFEEGIAFAKKAQERGVVVSKDLPINVQLAEYAKVFFEKLKSEVQVDEL 289 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKK---GKKFIQ 298 EL ++ N +Y V V +K+A+E Q L K K + Sbjct: 290 ELSKFFKANHNRYNQHASIDVNVAVLKIAASKEDIAAIEKKAEEILQGLTKENFAKTGEE 349 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L ++ ++ LG F K + ++ FS + + VI FG + ++ ++ Sbjct: 350 LQKKSTDTVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQE 408 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--DLP 416 + + + +++A+Q I K+ + + ++L++ ++ I++ + D+ Sbjct: 409 NKVKAAHILFREVASQDSIAKSLREAETMKEKLDKKEVTFETLKNINKNLLFTHMFTDVD 468 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 V ++ Y ++ DD ++K + Y++ + KE + Sbjct: 469 KSGMIPGFVNDTKLVETMYAAEMNKVQIYADDYVTKAGII------YLFSKTKEVQD-KV 521 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 LEEV V+ ++K + +E+ N Sbjct: 522 VSLEEVRDKVQDEYKAWRAQQELQKLMN 549 >gi|291277225|ref|YP_003516997.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter mustelae 12198] gi|290964419|emb|CBG40269.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter mustelae 12198] Length = 278 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 14/175 (8%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + +V E+ KK I E++ Y+ N +++ E ++ ++EA++ Sbjct: 96 QLLLQAWQHNVAEQAKKTVIPEAEVKKFYDDNPKQFIQQEG-HARHILVKTKEEAEKIIA 154 Query: 289 SLKKG------KKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 L K +KFI+LA + + LG+F + + D++F+L+ Sbjct: 155 ELNKAPKSRVEQKFIELANKYTTDPNAKKAQNGGDLGTFQRNQMV-PEFGDAVFALSPNT 213 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +GY + ++ T+SF E K I N + K E ++ + L Sbjct: 214 YTKTPVKTQYGYHVVYLIKKGSPKTISFAEAKPTIENMFKERKFQEMAQDKIQHL 268 >gi|255262339|ref|ZP_05341681.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62] gi|255104674|gb|EET47348.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62] Length = 281 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 57/149 (38%), Gaps = 5/149 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ + +QA Y+ ++ +EA ++ G F ++A E+ Sbjct: 113 AVTEEAIQAAYDARFSGAEPETEYNASHILVETLEEAVAVQAEIEAGADFAEVAAEKSTG 172 Query: 307 LSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG F + ++ + + G + + FG+ I ++ + + Sbjct: 173 PSGPNGGQLGWFGPGMMV-APFEAAVVEM-EVGTLSGPVETQFGFHIITLNETRVKEAPA 230 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ ++ +++ + +K+ E + E Sbjct: 231 IETLRPELEAELQQSAIEDKITELREAAE 259 >gi|163787467|ref|ZP_02181914.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium ALC-1] gi|159877355|gb|EDP71412.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium ALC-1] Length = 718 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 88/726 (12%), Positives = 195/726 (26%), Gaps = 121/726 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR+ R+ + + + + F+I L + + + +V + + F Sbjct: 4 LNKIRQ--RSLILILVIALALFSFVIGDLFKNSDALTGESQDVIATVNGKDINRLDFQQK 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K + ++ + L K ++ + E +GL + + + Sbjct: 62 VKSYQERVGGRVSSTQAMNTIYNQELRKIVMKS---------EFEALGLSVEKDEMRDLL 112 Query: 120 A----RSPLFHGKDNKFSHDVFVSRLAR----EGINEKEY---------------IDHYT 156 P F ++ F + + +A +G N Sbjct: 113 KTSFSSYPEFQDENGIFDVNRLNAFIANLKDLQGANPDSAPLGNFLVNYDSWTNNEQTIA 172 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQ 215 + M G+ + + + + Y+ + + + + S ++ Sbjct: 173 ANAVQQTYYNMIKAGVSTTISEAEDEYFGDAKTVDIRYVQVPYTSIADSLVEVSKNDISA 232 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + + ++ Y+ E + I Y+ F + + +L + ++ ++ T Sbjct: 233 YIKNNEEKYKVDERREIVYVEFKEEASKADEDRIKADLLKL-KSDRPEWNESSKNTDTIP 291 Query: 276 VFPNQKEADE---AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 F + ++ A +K F++ A+ + +L F L Sbjct: 292 GFDSTTNVEDFINANSDIKYNDAFLRAAQLPATAKD--TLMKLDVGSYYGPYRDGEYFKL 349 Query: 333 AKKGDFTPVIHGSFGYVIAH----VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 +K + I SN P T + E K + + K+ K + Sbjct: 350 SKIITVKQLPDSVNVRHILVPFAGASNAGPDVTKTLAEAKITADSILAKIKSGTKFMDLL 409 Query: 389 KRLEEFLALGTS-------MDEISRREKIVSIDLPL----VDFAGKDVKGKEVAAIPYKE 437 + + ++ ++ K S D + V E+ Sbjct: 410 ELSSDKVSNENDGELEFAYNAGMAPEFKAFSFDNKVGDIDVVGTSFGYHIIEILEQKSFN 469 Query: 438 QLLFRVFGKDDPLSKDHT------------VALPDGSY---MWVQIKESIPARDRKLEE- 481 + D D T +A DG + + P ++L+E Sbjct: 470 TAIKVATLADKVEPSDETLSDVFNKMSKFEIAAKDGDFNALAAERKLVVKPIVFKELDEN 529 Query: 482 ----------VLTD--------------------VKKDWKTVKTAEEVSSKANQLVL--E 509 V + K +S + + E Sbjct: 530 IPTLGSQREVVRWAFNEGTEKGEYKNFPISGFGFIVAKLVDKKPEGLMSVEDASITALPE 589 Query: 510 YSKEGK-----------NFRDIGKNLGASLLTTNQINRMDNE--NKFFGYDGISQVFSGP 556 KE K + DI KN G S T + + + F Sbjct: 590 IRKEKKAKMIRDKITATSIDDIAKNNGQSPRTAAAVTIKNTTLSGAGVEPQVVGAAFGLA 649 Query: 557 VEMVKCFPIENGLSYVVFKVTNS-KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 V PI+ V +VT + + ++ L + V L+ Sbjct: 650 QG-VTSKPIDGEKGVYVIEVTKVNEATKLDNYTSIMNRLNAERKNIIQGKVYQALEKAAE 708 Query: 616 VTVHDN 621 + + Sbjct: 709 IEDNRA 714 >gi|282855468|ref|ZP_06264788.1| foldase protein PrsA [Pyramidobacter piscolens W5455] gi|282586694|gb|EFB91942.1| foldase protein PrsA [Pyramidobacter piscolens W5455] Length = 303 Score = 96.2 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 17/167 (10%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQ 288 ++ K ++ + Q Y+++KE + P ++ Q++A + + Sbjct: 115 DEAGKTPATDQDAQKYYDEHKEIFQVPAAIRASHILIRADKNMPAKDQKAAQEKAADLIR 174 Query: 289 SLKKGKK-FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K GK F A+ + LG FSK + + F+L K + Sbjct: 175 DIKAGKTTFEDAAKNNSADGTRSRGGDLGYFSKGQMV-PEFEKAAFALKKGEMTAKPVKT 233 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FGY + ++ + + F EVK+DI + K + ++++ L Sbjct: 234 DFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQVKAIQDERDAL 280 Score = 44.2 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%) Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 K + KA L+ + F D KN A + + + Sbjct: 159 AKDQKAAQEKAADLIRDIKAGKTTFEDAAKNNSADGTRSRGGDLGYFSKGQMVPEFEKAA 218 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIA 608 F+ + P++ Y V K T+S+ + K+ + L + + Sbjct: 219 FALKKGEMTAKPVKTDFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQVKAIQDERD 278 Query: 609 YLKSQYSVTV 618 L+++Y V + Sbjct: 279 ALRARYGVKI 288 Score = 40.7 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%) Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + KA+++ + + + A T+ ++ ++ G + +P Sbjct: 160 KDQKAAQE--KAADLIRDIKAGKTTFEDAAKNNSADGTR----SRGGDLGYFSKGQMVPE 213 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 E+ F + + T D Y ++ +S A R EV D+K D K Sbjct: 214 FEKAAFALKKGEMTAKPVKT----DFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQ 269 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGK 522 + + + + L Y + Sbjct: 270 VKAIQDERDALRARYGVKIAAPEAPAS 296 >gi|224825282|ref|ZP_03698387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602203|gb|EEG08381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 264 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 E K+ +++ +++A Y++ + + Q++ ++ EA + LKKGKKF L Sbjct: 107 AEIVKQSPVTDAKIKARYDQLASQQAGSKEVHARQIMVASEAEASKVIADLKKGKKFEDL 166 Query: 300 AEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ K S +G + + + LA+++ L K + G+ + + + Sbjct: 167 AKTLSKDPAAKQSGGDMGWGNLSQM-EPKLAEALKGLGKGQSSSQPFKSGLGWHVFKIED 225 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 I+ + EVK IA Q++ ++ V E + + Sbjct: 226 IRDAKLPPLNEVKAQIARQIQQEDVAKAVGELRSKAK 262 Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 54/131 (41%), Gaps = 2/131 (1%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 K+ + ++A++++ + K+GK F D+ K L M N Sbjct: 135 KEVHARQIMVASEAEASKVIADL-KKGKKFEDLAKTLSKDPAAKQSGGDMGWGNLSQMEP 193 Query: 548 GISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 +++ G P ++GL + VFK+ + + + ++ + + + + ++ + Sbjct: 194 KLAEALKGLGKGQSSSQPFKSGLGWHVFKIEDIRDAKLPPLNEVKAQIARQIQQEDVAKA 253 Query: 607 IAYLKSQYSVT 617 + L+S+ + Sbjct: 254 VGELRSKAKIQ 264 >gi|167586945|ref|ZP_02379333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ubonensis Bu] Length = 259 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 4/145 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + ++ E++A Y++ + + E+ + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPTDAEVKARYDELVKGAANREL-HLHHILVDNEQQAKDLIAKIKAGAKFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G ++ A + L K + FG+ I V ++ Sbjct: 162 AKQYSKDPGSGKNGGDLDWADPKAYVPEFAAAATKLQKGQMTDEPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + F +VK IA QM K Sbjct: 222 RSVAPPPFDQVKPQIAQQMVQQKLQ 246 Score = 43.1 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 +A L+ + K G F D+ K + +D + K + + + Sbjct: 142 EQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWADPKAYVPEFAAAATKLQKG 200 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ + + +V + + D+ + Q M + L + L+ Q V Sbjct: 201 QMTDEPVKTQFGWHIIRVDDVRSVAPPPFDQVKPQIAQQMVQQKLQAFEESLRQQAKVQ 259 Score = 38.4 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 50/163 (30%), Gaps = 18/163 (11%) Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEK-----VKEDYKRLEEFLA---LGTSMDEI 404 + + + EVK ++ E + ++ ++ ++ +A G +++ Sbjct: 102 IEDFLKKNQPTDAEVKARYDELVKGAANRELHLHHILVDNEQQAKDLIAKIKAGAKFEDL 161 Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 +++ P G D+ + A + D V G + Sbjct: 162 AKQYS----KDPGSGKNGGDLDWADPKAY--VPEFAAAATKLQKGQMTDEPVKTQFG-WH 214 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKAN 504 +++ + ++V + + K E + +A Sbjct: 215 IIRVDDVRSVAPPPFDQVKPQIAQQMVQQKLQAFEESLRQQAK 257 >gi|57168166|ref|ZP_00367305.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228] gi|57020540|gb|EAL57209.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228] Length = 273 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGK--- 294 + I++ + +++A YE+NKEKY P + ++ +++EA + + LK KGK Sbjct: 104 EKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKGLKGKALD 163 Query: 295 -KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF QLA+E+ LG F + + D+ F+L T + +FGY Sbjct: 164 DKFSQLAQEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F +VKK I N ++ + + + + + L Sbjct: 223 VILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDL 264 >gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Herminiimonas arsenicoxydans] gi|133737548|emb|CAL60591.1| Chaperone SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (PPIase SurA) (Rotamase SurA) [Herminiimonas arsenicoxydans] Length = 469 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 77/493 (15%), Positives = 156/493 (31%), Gaps = 116/493 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + +V V + + FI K + + G + E+ L +++L+ ++ Sbjct: 54 DAILVVVNNEVITRYEFIERLKVIENRLKGQGGQMPPMEQ-----LQRQLLERMIVERAQ 108 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G++ D + +AR N+ + F RL ++G+ ++ + + Sbjct: 109 LQQAKESGIKVDDAMLDRAVARI----ADQNQLTMPEFRKRLEQDGMVYFQFREEIRSEM 164 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + R VD S+A + + + Sbjct: 165 ILQRLRE-----------------------REVD----------NKIQVSDAEVDAYMAE 191 Query: 220 YKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + N AP+ + IL V E ++++ Sbjct: 192 HSGTNANAPQELNLGQILIRVPENATPQQLAD---------------------------- 223 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 ++K A+E L G F +LA L+ LG +++ +P + D+ SL ++ Sbjct: 224 SRKRAEEVLAQLNAGGDFAKLAAAYSDGTDGLTGGELGWRTQDRLPQL-FVDATASL-QQ 281 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFT---------VSFQEVKK--------DIANQMRIT 378 G P++ G+ I V + + VK+ + + Sbjct: 282 GQIAPLVKSGNGFHILKVLGKRTQSVLRAAPGANPAAANTVKQTHASHILIKVNQVVSAA 341 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 A K+ E +RL+ A + +E++R G G V Sbjct: 342 DARRKLTELKQRLDNKAA---TFEELAR-LHSNDFSASKGGDLGWIYPGDTVPEFERAMD 397 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-----VKKDWKTV 493 L + P G Y + +KE RK ++V + V++ + Sbjct: 398 AL-------PVGEVSEPIESPFG-YHLILVKE------RKSDDVSQERQRLVVRQALRAQ 443 Query: 494 KTAEEVSSKANQL 506 K E Q+ Sbjct: 444 KVEEATQDWLRQV 456 >gi|302876602|ref|YP_003845235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] gi|307687276|ref|ZP_07629722.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B] gi|302579459|gb|ADL53471.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] Length = 339 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 116/396 (29%), Gaps = 83/396 (20%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K + V + L + + G+++ + V VG +K+ + + + Sbjct: 2 KNIKKLVTAVMLGTMIISVSACGIAEKTPAAKAKQVVAKVGEKKITRGEVDTAMQSYIDE 61 Query: 67 ISQKIGFVV--NSERARSVGLDKKI-LDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARS 122 K G + E +S+ ++ L N+V + Q+IED LE + + E Sbjct: 62 AKAKYGEKYETSKEAMKSINAQREAQLKNMVDTELMLQYIEDNNLEINMDEINSETDKEI 121 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 + ++ L G + + ++ Sbjct: 122 EKMKTDYGQGDEQKYIDVLKNAGFTPESFKEYTKNRKLTDKAKEAI-------------- 167 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY--KRISYILFDVH 240 S+ L F ++ ++ + K + YIL Sbjct: 168 --------------------GKDITVSDEELATSF--NEETFKTEKANIKHVQYILIKND 205 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E K N++ AD A +K G F A Sbjct: 206 ANEDKA-------------------------------KNKEIADAALAEIKGGLSFADAA 234 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSN 355 ++ + S LG + + + +L G + +I +G+ I Sbjct: 235 KKYSEDSSTSQTGGYLGEVTDQSQLVEGFLKAALAL-NPGQVSEIIDEPTYGFFIIKALP 293 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I+ + + F++ K + K S K E ++L Sbjct: 294 IEEA--IPFEKEKS--KASLLQEKQSSKYTEVLEQL 325 >gi|257092906|ref|YP_003166547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045430|gb|ACV34618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 336 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 7/158 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298 + K S++ L+AEYE+ K E + ++ + EA LKK F + Sbjct: 120 QDLIKNGAASDEVLKAEYERIKATITGSEYK-ARHILVEKEAEATAIIAKLKKDPGAFAK 178 Query: 299 LA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA ++ G S LG F + A ++ L K + +GY + + Sbjct: 179 LAMEKSKDAGSKASGGELGWFDLSRMV-PEFAAAVSKLEKGAITQEPVKTPYGYHVIQLE 237 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + KP F+EVK +A Q++ + + + + + Sbjct: 238 DSKPIEAPPFEEVKPHLAQQVQQQNLKKHLDDLKAKAK 275 Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 67/220 (30%), Gaps = 35/220 (15%) Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463 ++ +D D+ + V A Y + L+ D+ L ++ Sbjct: 87 VAEEAVKKGLDKSPEVIEQIDLMRQSVLASAYVQDLIKNGAASDEVLKAEY--------- 137 Query: 464 MWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522 E + + ++K E ++A ++ + K+ F + Sbjct: 138 ----------------ERIKATITGSEYKARHILVEKEAEATAIIAKLKKDPGAFAKLA- 180 Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVT 577 E +F + F+ V + P++ Y V ++ Sbjct: 181 ---MEKSKDAGSKASGGELGWFDLSRMVPEFAAAVSKLEKGAITQEPVKTPYGYHVIQLE 237 Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 +SK ++ +L Q + + L + LK++ + Sbjct: 238 DSKPIEAPPFEEVKPHLAQQVQQQNLKKHLDDLKAKAKIE 277 >gi|254787082|ref|YP_003074511.1| chaperone SurA precursor [Teredinibacter turnerae T7901] gi|237683982|gb|ACR11246.1| chaperone SurA precursor [Teredinibacter turnerae T7901] Length = 428 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 55/425 (12%), Positives = 125/425 (29%), Gaps = 68/425 (16%) Query: 17 FLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 V + F + L VV V + + S + + G + Sbjct: 4 IFVSVLAVFALALSLPSYSQPQMLDRVVVIVDKSVITQSELDSRIANITQRA-AQAGMRL 62 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 L K++LD L+S + G+E + G I + + Sbjct: 63 PGRDV----LQKQVLDQLISETLQLNMAKRYGIEISDADLNGAIQNIKA----SRGWDDE 114 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD- 193 F + E N E+ ++ + ++ V V G +R S + + + Sbjct: 115 TFAREIHAEAANMHEFRENLRREITLQQVSQGVVRGRIRISEQEISNFLKSADAQFWISP 174 Query: 194 -------YIVLNNRHVPAIADPSNAVLTQWFEK--YKDNY---RAPEY------------ 229 I L + + +++ N+ E Sbjct: 175 DYRLGHILIPLPPAPSKEQTEAAEKRAEAIYQQLVNGANFGEMAIAESSGPSALKGGDLG 234 Query: 230 -KRISYILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRTVEQLVF- 277 ++ + + E +E+ + + +K E V ++ Sbjct: 235 FRKSADLPTLFAEIAPTLEVGDVSKPARSQAGFHILKLMDKRGETKQVVSQAKVRHILLK 294 Query: 278 --------PNQKEADEAFQSLKKGK-KFIQLAEEQGKSL----SDISLGSFSKEYIPDVS 324 + + ++ + + KG+ F +LA++ + + S LG + Sbjct: 295 PSAILPSDKARAKLEQMREQIIKGEADFAELAKDNSEDIGSKMSGGDLGWAEPDTFVG-E 353 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 A +I K G+ + FG+ I V + + ++ I + R S + Sbjct: 354 FAQTI-RDTKIGEISEPFQTQFGWHILEVLDRRQEDLT-----EEAIRAKARQVLTSRRF 407 Query: 385 KEDYK 389 +++ + Sbjct: 408 EDETQ 412 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 68/208 (32%), Gaps = 21/208 (10%) Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +R + I+ +I IS E+ + +++ + ++ P Sbjct: 125 ANMHEFRENLRREITLQQVSQGVVRGRIRISEQEISNFLKSADAQFWISPDYRLGHILIP 184 Query: 279 ------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSL 325 +K A+ +Q L G F ++A + S + G ++ +L Sbjct: 185 LPPAPSKEQTEAAEKRAEAIYQQLVNGANFGEMAIAESSGPSALKGGDLGFRKSADLPTL 244 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKA 380 I + GD + G+ I + + + + K + + KA Sbjct: 245 FAEIAPTLEVGDVSKPARSQAGFHILKLMDKRGETKQVVSQAKVRHILLKPSAILPSDKA 304 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRRE 408 K+++ +++ + E+++ Sbjct: 305 RAKLEQMREQI---IKGEADFAELAKDN 329 >gi|254437017|ref|ZP_05050511.1| PPIC-type PPIASE domain protein [Octadecabacter antarcticus 307] gi|198252463|gb|EDY76777.1| PPIC-type PPIASE domain protein [Octadecabacter antarcticus 307] Length = 284 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 59/151 (39%), Gaps = 5/151 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + + +LQA Y+ ++ ++EA E + G F + A E+ Sbjct: 114 SAPVGDADLQAAYDARFADVAPDTEYNASHILVTTEEEATEIKAMVDDGADFAETAVEKS 173 Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG F + + +++ +L G+ + + FG+ I ++ + + + Sbjct: 174 TGPSGPSGGDLGWFGLGMMV-PAFEEAVLTL-DAGEVSAPVETQFGWHIIMLNEARETPS 231 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++++++A ++ + + + Sbjct: 232 PTLDDLREELAIDIQQQALDALINSLTESAD 262 >gi|313681753|ref|YP_004059491.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] gi|313154613|gb|ADR33291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] Length = 280 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGKK-- 295 ++ + I++ E++A ++ N E++ E ++ + EA +S+K G K Sbjct: 111 QQQFEAIKVDAKEVKAYFDANPEEFVDKEKIHARHILVKTEGEAQSIIKSMKGLSGDKLR 170 Query: 296 --FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 FI A+ + + LG F + + S D+ F++ + + + FGY + Sbjct: 171 NEFIAQAKSKSTGPSAAKGGDLGYFPRGQMV-PSFNDAAFAMKEGAISSTPVQSQFGYHV 229 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 ++ + KP+ + F EVK I ++++ K +++ L Sbjct: 230 IYIEDKKPAKKLGFDEVKNFIEQRLKMDKFKATMEKKMSDL 270 >gi|254243688|ref|ZP_04937010.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa 2192] gi|126197066|gb|EAZ61129.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa 2192] Length = 430 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + ++ G + E L +++L+ L+ Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S + F + L R+G++ + + + + Sbjct: 86 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYSDAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ S + + E R + ++ + + + Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201 Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ +K A + ++ ++ G Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 321 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L E + + + +G+ + FG+ Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + F+E + + +R K E+++ +++ + Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167 RV + + + ++ +V + L R + + + L ++ Sbjct: 28 VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87 Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G+R S+ L+QA + + S+A R Sbjct: 88 IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYSDA-------------R 134 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282 + + ++I++S E++ + K E + ++ P + Sbjct: 135 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194 Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 A E +Q LK+G F QLA + +L +G +P I Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382 SLA GD T + G++I + + + EV +I ++ K ++ Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 312 Query: 383 KVKEDYKRLEEFLALGTSMDE 403 K+ E + E+F L S E Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333 >gi|110677781|ref|YP_680788.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Roseobacter denitrificans OCh 114] gi|109453897|gb|ABG30102.1| PPIC-type PPIASE domain protein [Roseobacter denitrificans OCh 114] Length = 285 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 59/147 (40%), Gaps = 5/147 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + ++ +++QA Y+ E ++ ++EA +++ G F A E+ Sbjct: 114 EQAVTEEDIQAAYDAEFGNLDPEEEFNASHILVATEEEAIAVKEAIDGGANFAATAREKS 173 Query: 305 KSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG FS + S + +L + G+ + + FG+ + +++ + Sbjct: 174 TGPSGPNGGELGWFSTGMMV-PSFEAATIAL-EVGEVSDPVETQFGWHVITLNDTRQKNI 231 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDY 388 + +E ++ I ++ A ++ Sbjct: 232 PTLEEAREGIEARLAQDAALGIIQNAA 258 >gi|21675072|ref|NP_663137.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS] gi|21648311|gb|AAM73479.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS] Length = 438 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 79/499 (15%), Positives = 148/499 (29%), Gaps = 100/499 (20%) Query: 15 KIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 K+ VL + G +DA S V VG + + S +QEL + Q Sbjct: 3 KVLFAVLAALMIAMNGFADAAASTGLDRIVAIVGNEIILASDVN---EQELMLHLQY--- 56 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW-GEIARSPLFHGKDNKF 132 E + L K+IL+N+++ + + ++ D V AR Sbjct: 57 ---PETRKDPQLRKRILENMINQKIILTKAKIDTVKVDEKSVDDQAAARYSSLRAGFPSV 113 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S + +R G+ H + + ++ F Sbjct: 114 S-----AMESRFGMPVNRLKQHIREDIRDQQMIEAFRRKNFH------------------ 150 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISND 251 S ++ + K APE +S I+ +S Sbjct: 151 ------------EVTVSYDETMAFYNQEKGALPEAPETVSVSQIIKMPL-------VSEA 191 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 QA +K K Q L+ G F LA E Sbjct: 192 ARQAALDKIK-----------------------AVQQQLEAGGSFATLAREYSDDPGSRE 228 Query: 312 LG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS----- 363 G F+++ S ++ S+ K G + ++ FGY I + + + + Sbjct: 229 KGGDLGFTRKGELVPSFEEAA-SVLKPGQISGIVETRFGYHIIQLIDKEGDRIHTRHILA 287 Query: 364 -FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDF 420 F K DI + + K+ K + L+ + E++++ S + Sbjct: 288 LFDRSKTDIPATIALLKSIRK---------DVLSGKATFAEMAKKYSDDPASATNGGLIT 338 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRK 478 +G EVA + + + +S+ + + Y + PA Sbjct: 339 SGSGNPDLEVATLRPDLRKIIDGLKSKGDISQPEKIESDKSAPFYALFMLNSRTPAHVLT 398 Query: 479 LEEVLTDVKKDWKTVKTAE 497 E +++ K+ E Sbjct: 399 PEHDFAQIQELALNHKSQE 417 >gi|228990140|ref|ZP_04150111.1| Foldase protein prsA 1 [Bacillus pseudomycoides DSM 12442] gi|228769579|gb|EEM18171.1| Foldase protein prsA 1 [Bacillus pseudomycoides DSM 12442] Length = 281 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 29/192 (15%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++YK + + S +K + I++ EL+ Sbjct: 65 TVDDKEVDKKYDEYKKQLGDQFDAALKQQGFTKDSFKESVRAELAMDKAIESSITDKELK 124 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA+ ++G + Sbjct: 125 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDKGSAEKGG 175 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + +D+ + L KK + + + FGY I V++IK SF+E K + Sbjct: 176 DLGYFGPGKMVK-EFSDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKSFEEEKAN 231 Query: 371 IANQMRITKASE 382 I + K + Sbjct: 232 IKKGLVEKKKQD 243 >gi|116054322|ref|YP_788767.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa UCBPP-PA14] gi|218889335|ref|YP_002438199.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa LESB58] gi|254237192|ref|ZP_04930515.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa C3719] gi|296387100|ref|ZP_06876599.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PAb1] gi|115589543|gb|ABJ15558.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169123|gb|EAZ54634.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa C3719] gi|218769558|emb|CAW25318.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa LESB58] Length = 430 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + ++ G + E L +++L+ L+ Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S + F + L R+G++ + + + + Sbjct: 86 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYADAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ S + + E R + ++ + + + Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201 Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ +K A + ++ ++ G Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 321 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L E + + + +G+ + FG+ Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + F+E + + +R K E+++ +++ + Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167 RV + + + ++ +V + L R + + + L ++ Sbjct: 28 VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87 Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G+R S+ L+QA + + ++A R Sbjct: 88 IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYADA-------------R 134 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282 + + ++I++S E++ + K E + ++ P + Sbjct: 135 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194 Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 A E +Q LK+G F QLA + +L +G +P I Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382 SLA GD T + G++I + + + EV +I ++ K ++ Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 312 Query: 383 KVKEDYKRLEEFLALGTSMDE 403 K+ E + E+F L S E Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333 >gi|312621942|ref|YP_004023555.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor kronotskyensis 2002] gi|312202409|gb|ADQ45736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor kronotskyensis 2002] Length = 340 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 34/265 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFE---------NRSVDYIVLNNRHVPAIADP-- 208 SRTD++ G LL D+ E R+++ + Sbjct: 67 SRTDILDQVFNGKTYRELLKDELFTILTEELLCLQEARKRNINLTKQEEEEIKKYIQELK 126 Query: 209 SNAVLTQWFEKYKDNYRAPEY------KRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 +N + +F +Y + E + I K +S+ E+ Y NK Sbjct: 127 TNEEMRGYFNQYLRKINSDENHFYRDLYKTRLINKLYSSITSKTTVSDSEIINYYNTNKN 186 Query: 263 KYFSPEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSF 315 ++ +I + V +++A ++ LKKG+ F +L ++ + + G Sbjct: 187 QFKKRKIIDIFLKVENEEEDARKREIANKIVSELKKGESFEKLVKKYSEDDGASTTKGII 246 Query: 316 ------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 KE + +F LA G + VI GY I V + K + EVK+ Sbjct: 247 DYFRKGEKEAEYGSVFEEEVFKLA-VGQISNVIKTVKGYHIVKVLDEK---YMPLDEVKE 302 Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394 +I +++ K E + + L++ Sbjct: 303 EIQSKLMKQKKDEAFRLYIENLKKL 327 >gi|305431687|ref|ZP_07400856.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20] gi|304445282|gb|EFM37926.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20] Length = 273 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--KGK--- 294 + I++ + +++A YE+NKEKY P + ++ +++EA + + LK KGK Sbjct: 104 EKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKGLKGKALD 163 Query: 295 -KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F QLA+E+ LG F + + D+ F+L T + +FGY Sbjct: 164 DNFSQLAQEKSIDPGSKNQGGELGWFDQSTMVKP-FTDAAFALKNGTITTTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + N + + F +VKK I N ++ + + + + + L Sbjct: 223 VILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDL 264 >gi|196230321|ref|ZP_03129184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter flavus Ellin428] gi|196225918|gb|EDY20425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter flavus Ellin428] Length = 319 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 52/384 (13%), Positives = 118/384 (30%), Gaps = 81/384 (21%) Query: 20 VLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 ++ + + GL+ + F+ V V FS + + + Sbjct: 6 LIPLSLVCIGLAISTFTARAQEVLDGIAAVVNSDVVTFSQVRELVGPKEKQAHETLKGQE 65 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 E+ + + + +++L+ A + Q + G + I + Sbjct: 66 LVEKIKE--IRTEAINDLIDRALIIQEFKTKGYTIPDYFIDDRIQGI--IKDEFGN-DRQ 120 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F+ LA + +++ D M+ +++ V G Sbjct: 121 AFLRTLAAQNYTLEKFRDLQKDMIIVSEMRKQAVKGAT---------------------- 158 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 +A +T +++++ + Y PE ++ I Sbjct: 159 -----------SVPDAKITAYYKEHLEEYSQPEQMKLRMIAI------------------ 189 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISL 312 + + R K DE Q + G +F LA + S Sbjct: 190 -------RGVENDSRR---------KMIDEIRQKIVGGAEFGDLARMYSEDSSQEQYGDW 233 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G ++ + + SL + FSL K G+ + V+ Y + + KP+ ++V +I Sbjct: 234 GWIDRKKL-NESLTKTAFSL-KPGEMSQVVELGGSYYLLYCEAKKPATVKPLKDVHDEIE 291 Query: 373 NQMRITKASEKVKEDYKRLEEFLA 396 + T+ ++ + +L Sbjct: 292 KVLLQTERQQQQADWLAKLRRKAY 315 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 9/122 (7%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ + + + G +++R S D+ D K E L F Sbjct: 198 RKMIDEIRQKIVGGAEFGDLARMYSEDSSQEQYGDWGWIDRKK-------LNESLTKTAF 250 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 P V L GSY + + PA + L++V +++K + ++ + Sbjct: 251 SL-KPGEMSQVVELG-GSYYLLYCEAKKPATVKPLKDVHDEIEKVLLQTERQQQQADWLA 308 Query: 505 QL 506 +L Sbjct: 309 KL 310 >gi|148264478|ref|YP_001231184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] gi|146397978|gb|ABQ26611.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter uraniireducens Rf4] Length = 299 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 89/274 (32%), Gaps = 39/274 (14%) Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 + + ++L V + + + +N D + + V A Sbjct: 60 PAQRAEIVRQLLLTKAVAARSRKEGFDKKPEVKEELGYVIDNYLADQYL--RKVVTADVA 117 Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 L +++ +++ ++ + R+ +I F+ + +P Sbjct: 118 IPEEELKKYYAEHEKDFLISQSARVRHIYFEAAKDA----------------------TP 155 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323 E + + +A+ + LK+G F +A + LG S Sbjct: 156 E------VKEKAKAKAEAILKQLKEGADFAAVARASSEDADSASKGGDLGVLSPGKTNSK 209 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + F+L K G+ +PV+ FGY I V T SF E K I ++ +K Sbjct: 210 EFEKAAFAL-KAGETSPVVETPFGYHIIRVDERTDQRTASFDEAKDYIRTTLKGQFEQKK 268 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 +E +L A ++ + + P Sbjct: 269 AREFLDKL----AKEAGLEVVQQAPAATGDSKPQ 298 >gi|308271396|emb|CBX28004.1| hypothetical protein N47_G33280 [uncultured Desulfobacterium sp.] Length = 332 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 45/346 (13%), Positives = 117/346 (33%), Gaps = 70/346 (20%) Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 + S + + I + G+ E A + + +LD L++ DQ I+ G+ Sbjct: 48 ITLSDLEVATRAYTEKI-KSAGYGFEEEHAMLFKMREDMLDQLINRKLTDQEIKKYGIST 106 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 + + I R + + + + ++G+ ++ D + + R+ V+ + Sbjct: 107 NDKEIDNSIERIKEAKYLTD----EELRNMVTKDGMTFDDFRDAIKENILRSKVLDI--- 159 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 V + + +++ +K +Y Sbjct: 160 ------------------------------EVKSKIVITKEDTKAYYDSHKSDYMPQNKY 189 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + I+ + + +K+ ++ + L Sbjct: 190 HLFNIIIKTNSEADGD-----------DKH-----------------EAMSVMEKIYAKL 221 Query: 291 KKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 K+G+ F +++++ + + + LG F + + + D+I +L +K +FT ++ GY Sbjct: 222 KQGQPFEEVSKDSAESSGVENSDLGYFKADEL-SPQIQDAIKNLKQK-EFTKILETDLGY 279 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 I ++ +I+ S E I + + K ++L + Sbjct: 280 QIIYIKDIEVKPGKSLDEAAAGIQGILFNDIIDKNFKLWMEQLRKK 325 >gi|71899114|ref|ZP_00681278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|71731108|gb|EAO33175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] Length = 463 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 53/430 (12%), Positives = 119/430 (27%), Gaps = 64/430 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + G + E L +++L+ L+ Sbjct: 34 DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + I+ ++NK S D +L EGI+ E+ + Sbjct: 89 VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAV---- 212 + + F + S +D A + +I+++ + A Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQANSGAQYHLQHILVSLPDGATSEQIAIAQKKIN 204 Query: 213 -LTQWFEKYKDNYRA-------------------------PEYKRISYILFDVHEKEKKI 246 + +K + + A PE + + Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264 Query: 247 E-ISNDELQAEYEKNKEKYFSPEIR-----TVEQLVF---------PNQKEADEAFQSLK 291 S +L E + + + ++ + + D + Sbjct: 265 RGTSGFQLLKLVEVHDSTAAAGPRQMATEYHARHILVRITEKQKEAQAKAKIDTLRARIA 324 Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +A E + + LG F + + + +LA G+ + + G Sbjct: 325 GGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAAG 382 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + I + + + + + I + + K E + + L + +DE + Sbjct: 383 WHIVQRLGTRQTDV-TRENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIDEPADD 441 Query: 408 EKIVSIDLPL 417 S + Sbjct: 442 HHTPSAAVTP 451 >gi|228996233|ref|ZP_04155879.1| Foldase protein prsA 1 [Bacillus mycoides Rock3-17] gi|229003892|ref|ZP_04161699.1| Foldase protein prsA 1 [Bacillus mycoides Rock1-4] gi|228757344|gb|EEM06582.1| Foldase protein prsA 1 [Bacillus mycoides Rock1-4] gi|228763501|gb|EEM12402.1| Foldase protein prsA 1 [Bacillus mycoides Rock3-17] Length = 281 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 29/192 (15%) Query: 207 DPSNAVLTQWFEKYKDNY------------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + +++YK + + S +K + I++ EL+ Sbjct: 65 KVDDKEVDKKYDEYKKQLGDQFDAALKQQGFTKDSFKESVRAELAMDKAIESSITDKELK 124 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDI 310 Y+ PEI+ ++ ++ A + + L +GK F +LA+ ++G + Sbjct: 125 ENYK--------PEIK-ASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDKGSAEKGG 175 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + +D+ + L KK + + + FGY I V++IK SF+E K + Sbjct: 176 DLGYFGPGKMVK-EFSDAAYKL-KKDEVSEPVKSQFGYHIIKVTDIKE--QKSFEEEKAN 231 Query: 371 IANQMRITKASE 382 I + K + Sbjct: 232 IKKGLVEKKKQD 243 >gi|331017629|gb|EGH97685.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 440 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V + L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V ++ S + DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + I + Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291 + EK + + + V ++ + A + ++ ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATRLLAQKIYERIE 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G +L+ L + D + S +G+ + ++G Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + + A + +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|160872391|ref|ZP_02062523.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Rickettsiella grylli] gi|159121190|gb|EDP46528.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Rickettsiella grylli] Length = 431 Score = 95.8 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 42/371 (11%), Positives = 98/371 (26%), Gaps = 78/371 (21%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V + N + + + N + K++L+ ++ Q Sbjct: 34 AVVNHHAITAQQLDNQMEVKRQQWLSE-----NKSIPNTTTFRKQVLNEMIDQELQLQLA 88 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 IGL+ + + I + N + + +L + + Y + L Sbjct: 89 ATIGLKINDDTLDKTILSI----AQHNGLTLEQLREKLQQANMPFARYREQIRHQLLINR 144 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 + V A ++ + Sbjct: 145 LQQ---------------------------------NEVAAKITVTDQEIKD-------- 163 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + KK ++L + N + ++ A Sbjct: 164 ----------MLTHLPKIISKKAVYHVEDLLIPFSNNPS----------STDIARTKETA 203 Query: 284 DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 Q K+G F L E S LS LG +PD+ S+ +L K G+ Sbjct: 204 LSLLQKAKQGTSFSALIEHANASTIPLSGGDLGWRPLNDLPDI-FQTSVQTL-KPGEVAG 261 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLAL 397 I G+ + + ++ + + + T +++ + + + + Sbjct: 262 PIRADNGFHLIRLLELRGIAPAPHDVISTHARHILIKTSPLLNNQQAENRLREIRADILH 321 Query: 398 GTSMDEISRRE 408 G ++++ Sbjct: 322 GGDFASLAKKY 332 >gi|218961587|ref|YP_001741362.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus Cloacamonas acidaminovorans] gi|167730244|emb|CAO81156.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus Cloacamonas acidaminovorans] Length = 281 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 10/164 (6%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQSLKKGKKF 296 + I I+N +++ Y++ KE + PE ++ + +A++ + + F Sbjct: 109 FPQNIPITNAKIKEFYDEQKEFFLKPEQVRCSHILIRNDNEEAKAKAEQIRREIHNADDF 168 Query: 297 IQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 ++ S+ LG F + + + + FSL G+ + +GY I Sbjct: 169 TYFCQKYSDCPSNNVCGDLGWFPRGKMI-PEIEEVAFSLT-VGEISQPFLSPYGYHILMK 226 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + + F+++K + +++ + K+ L + A Sbjct: 227 TGQSEKEYIPFEDIKDSLYARLQQIEREYKLLRHLAELRKQYAS 270 >gi|254456501|ref|ZP_05069930.1| conserved hypothetical protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083503|gb|EDZ60929.1| conserved hypothetical protein [Candidatus Pelagibacter sp. HTCC7211] Length = 475 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 11/208 (5%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 S + + + + ++ V F+N + E + Q I +++ + +++L L+S Sbjct: 38 STNNQNNIAKINKKNVTTQDFMN-YLNESRISQQAIRENIDN------NIIEELLSGLIS 90 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 + IE++ L V +I + F ++N F + L ++ Y Sbjct: 91 TTLISLEIEELDLSITELTVLKKIKENKNFFDENNVFQRTKYEKFLLTNNMSAPMYELQL 150 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLT 214 + + G LL K+F EN+S+ + D +N+ + Sbjct: 151 KNKELQKHLFDFIGAGTITPEFLL--VKKFEEENKSLSLEYFPMENLYKNKEDLTNSEIE 208 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEK 242 + ++ KD + E+ Y+ + Sbjct: 209 NFLKENKDLLKR-EFIDFKYVTLNPQIL 235 >gi|15595791|ref|NP_249285.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PAO1] gi|9946466|gb|AAG03983.1|AE004495_7 peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PAO1] Length = 430 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + ++ G + E L +++L+ L+ Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S + F + L R+G++ + + + + Sbjct: 86 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQTALTRDGLSYADAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ S + + E R + ++ + + + Sbjct: 142 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 201 Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + Sbjct: 202 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ +K A + ++ ++ G Sbjct: 262 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 321 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L E + + + +G+ + FG+ Sbjct: 322 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 379 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + F+E + + +R K E+++ +++ + Sbjct: 380 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 425 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167 RV + + + ++ +V + L R + + + L ++ Sbjct: 28 VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 87 Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G+R S+ L+QA + + ++A R Sbjct: 88 IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQTALTRDGLSYADA-------------R 134 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282 + + ++I++S E++ + K E + ++ P + Sbjct: 135 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 194 Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 A E +Q LK+G F QLA + +L +G +P I Sbjct: 195 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 253 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382 SLA GD T + G++I + + + EV +I ++ K ++ Sbjct: 254 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 312 Query: 383 KVKEDYKRLEEFLALGTSMDE 403 K+ E + E+F L S E Sbjct: 313 KLYERIQSGEDFGELAKSFSE 333 >gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Herminiimonas arsenicoxydans] gi|133738848|emb|CAL61895.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Herminiimonas arsenicoxydans] Length = 258 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 65/145 (44%), Gaps = 5/145 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + + +++AEY++ + + E ++ +++A LK G KF +L Sbjct: 103 ADFLKKNPVKDADIKAEYDRFRAQASDKEY-HARHILVEKEEDAKAIIAKLKGGAKFEEL 161 Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+ + G + + L + +D++ SL K + + FGY + + ++ Sbjct: 162 AKQSKDPGSADNGGDLDWAAPAAFVKP-FSDAMVSLQKGQLYDTPVKTQFGYHVIKLDDV 220 Query: 357 KPSFTVSFQEVKKDIANQMRITKAS 381 + + + +EVK IA ++ K Sbjct: 221 RAAKIPTLEEVKPQIAEGLQQKKLQ 245 Score = 41.9 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 11/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 +ED K + L G +E++++ K A A + + + Sbjct: 142 EEDAKAIIAKLKGGAKFEELAKQSKDPG-------SADNGGDLDWAAPAAFVKPFSDAMV 194 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501 D V G Y +++ + A+ LEEV + + + K +++ + Sbjct: 195 SLQKGQLYDTPVKTQFG-YHVIKLDDVRAAKIPTLEEVKPQIAEGLQQKKLQAFQQQLRA 253 Query: 502 KAN 504 KA Sbjct: 254 KAK 256 Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 39/118 (33%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 + + ++ K G F ++ K N + F + S Sbjct: 141 KEEDAKAIIAKLKGGAKFEELAKQSKDPGSADNGGDLDWAAPAAFVKPFSDAMVSLQKGQ 200 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + P++ Y V K+ + + + ++ + + + + L + L+++ + Sbjct: 201 LYDTPVKTQFGYHVIKLDDVRAAKIPTLEEVKPQIAEGLQQKKLQAFQQQLRAKAKIQ 258 >gi|254469068|ref|ZP_05082474.1| foldase protein PrsA, putative [beta proteobacterium KB13] gi|207087878|gb|EDZ65161.1| foldase protein PrsA, putative [beta proteobacterium KB13] Length = 257 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y ++Y + + + K+ ISN+++ Y+ +++ E + + ++ + EA+ Sbjct: 91 YMEMAYTEY-LKKYIKEHPISNEDIDLAYKNFTKQFNEQEYKG-QHILVKTKNEAESLIG 148 Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 ++ G +F +LA+ ++ + L F E + + S A+ I +L + + + Sbjct: 149 KIENGNEFSELAKNFSIDKASAEKGGDLDWFRLEDMVE-SFANEIKNL-QINELSGAFQT 206 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ + +++ KP E+KK + + ++ K +KE + E Sbjct: 207 QFGWHVFKLTDKKPLTPPELSEIKKRLEDDLKKRKLKNHIKELKQNAE 254 >gi|171058521|ref|YP_001790870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170775966|gb|ACB34105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 275 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 4/143 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 +E +KK +++ E++AEY+K K E + ++ + EA LK G KF +L Sbjct: 113 NEYQKKNPVTDAEIKAEYDKVKSGAGEKEY-HAKHILVEKEDEAKALIAELKGGAKFDEL 171 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G P + ++ L K + FGY I + ++ Sbjct: 172 AKKASKDPGSAQNGGDLDWAAPANYVPEFSQAMVKLEKGKYTETAVKSQFGYHIILLDDV 231 Query: 357 KPSFTVSFQEVKKDIANQMRITK 379 + + +EVK + ++ K Sbjct: 232 REAQFPPLEEVKAQLEQRLAQQK 254 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 10/123 (8%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 +++ K L L G DE++++ S D G +P Q + ++ Sbjct: 152 EDEAKALIAELKGGAKFDELAKK---ASKDPGSAQNGGDLDWAAPANYVPEFSQAMVKL- 207 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501 + T Y + + + A+ LEEV +++ K EE+ S Sbjct: 208 ---EKGKYTETAVKSQFGYHIILLDDVREAQFPPLEEVKAQLEQRLAQQKMGKYREELRS 264 Query: 502 KAN 504 KA Sbjct: 265 KAK 267 >gi|237721455|ref|ZP_04551936.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4] gi|293370821|ref|ZP_06617366.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|229449251|gb|EEO55042.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4] gi|292634037|gb|EFF52581.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 713 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 92/722 (12%), Positives = 210/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L E Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + Y K K + Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDALKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I ++ +I + + + VI V+N K V I ++ Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 PI+ V +V K+ + + LT M + ++ L + + Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|237715673|ref|ZP_04546154.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1] gi|262408682|ref|ZP_06085228.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294807295|ref|ZP_06766109.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|229444382|gb|EEO50173.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1] gi|262353547|gb|EEZ02641.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294445593|gb|EFG14246.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 713 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 92/722 (12%), Positives = 210/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L E Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + Y K K + Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I ++ +I + + + VI V+N K V I ++ Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 PI+ V +V K+ + + LT M + ++ L + + Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|95930006|ref|ZP_01312746.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM 684] gi|95133975|gb|EAT15634.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM 684] Length = 303 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 113/381 (29%), Gaps = 95/381 (24%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW--KQELGMISQKIG 72 KI L +I ++++ S V + + + E + Sbjct: 4 KIVFTALLFSLII----PSVWAEQLSKIAAVVNDEIITTRQLEQRLVSRGERSATDAQ-- 57 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 ++ LDN+++ ++Q +IGLE + I N Sbjct: 58 -------------KRQELDNMINERLMEQRSREIGLEVSDDDIETAINDVQQ----QNNI 100 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S + L +G++ Y + + R ++G Sbjct: 101 SREQLEQALIAQGLSMSGYREQLRGQILRYKLMG-------------------------- 134 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 V + D + + +++++ D YR R+S + F + + Sbjct: 135 -------YEVKSKVDITRQEVRNYYQEHLDQYRQSPRVRLSRLTFPLGDDP--------- 178 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDI 310 ++ A A + L G+ ++ + Sbjct: 179 ------------------------TAARENATIALRKLDDGESVDEVLVNMSPRTRIEGG 214 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +GSF + + + +I L GD TP+I I V P V++ Sbjct: 215 EMGSFVAGELSE-TFEQAIADL-DSGDHTPLIPLGDALHILKVEERIPGSVADISTVEEQ 272 Query: 371 IANQMRITKASEKVKEDYKRL 391 I ++ K +K++E + L Sbjct: 273 IRGELSQQKMDQKLQEWRENL 293 >gi|330961060|gb|EGH61320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 440 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 85/377 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L K++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQKQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LA +G++ + + + + Sbjct: 86 LQMGERAGIRVSDEELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYDDAREQVRREM 141 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + V + R V S + + Sbjct: 142 IISRV----------------------RQRR-----------VAERIQVSEQEVKNFLAS 168 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + E ++ IL + + + Sbjct: 169 DQGKAQLSEEFHLANILIATPDSAS----------------------------SEAIQAA 200 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +A + LKKG F +LA +L +G +P D + S+ G Sbjct: 201 AIKAKSIYDQLKKGADFGKLATTNSSSENALEGGDMGWRKAAQLP-PPFGDMLSSMP-IG 258 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVK--------KDIANQMRITKASEKVKE 386 D TP G++I + + + EV +I ++ ++K+ + Sbjct: 259 DVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYD 318 Query: 387 DYKRLEEFLALGTSMDE 403 + E+F L S E Sbjct: 319 RIENGEDFATLAKSFSE 335 >gi|323697784|ref|ZP_08109696.1| SurA domain [Desulfovibrio sp. ND132] gi|323457716|gb|EGB13581.1| SurA domain [Desulfovibrio desulfuricans ND132] Length = 323 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 108/356 (30%), Gaps = 81/356 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 +V + V K I + + E+ + GL ++ LD LV+ + Sbjct: 28 DRILVKINDSIVTQYDLDQEMKPVYDQIKDR--KLTAREQTQLEGLRRQALDKLVNDVLI 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q I+ +E + EI R + K + + F +A++G++ +E+ K+L Sbjct: 86 QQEIKRFSVEVSDENIDKEIERV----RTERKLTLEEFQQMVAQDGLSMEEFRSRLKKLL 141 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + +++G V +++ + Q +E Sbjct: 142 EKQELIGHMVNS---------------------------------KVVVTDSEIQQEYEA 168 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 KD+Y + + ++ P+ Sbjct: 169 RKDDYSMGKMVEL----------------------------------------AIILLPS 188 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGD 337 + E + + G+ F + + S GS + D++ + G Sbjct: 189 EVSPVEVRERITSGEMTFAEAVAKYSVGPGKESGGSIGELSWEDLADDWQNALKGVSVGG 248 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + + I V ++V+ DI + K + + +L++ Sbjct: 249 VSTPLTIQNHQALLSPVKINEDRIVPLEDVRDDIYKDLMQKKRETVFTDYFNKLKQ 304 >gi|90021693|ref|YP_527520.1| tRNA pseudouridine synthase [Saccharophagus degradans 2-40] gi|89951293|gb|ABD81308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus degradans 2-40] Length = 264 Score = 95.4 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 19/164 (11%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQSLKK 292 K ++ + ++ Y N+++Y + V ++F +A EA L++ Sbjct: 103 KKNVTPEAIKNYYNNNQDEY-QNKKIHVAHILFRTNGRMSDEEKNARLLKAKEAHARLQQ 161 Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 +KF LA+E LG + I D + ++F++ G + S+GY Sbjct: 162 NEKFEDLAKEYSDDKLSAQKGGDLGWLDEGSI-DPVFSRTVFAM-DAGAVSEPFVTSYGY 219 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 I V + T F VK DIA +++ ++ ++ + Sbjct: 220 HIVKVIEAAKTTTKPFDAVKGDIAYKLKEQAKQAEMNRLKEQAK 263 >gi|150005095|ref|YP_001299839.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC 8482] gi|294778904|ref|ZP_06744320.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|149933519|gb|ABR40217.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC 8482] gi|294447213|gb|EFG15797.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 710 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 95/721 (13%), Positives = 204/721 (28%), Gaps = 126/721 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + + + + F+ L G V V + + + Sbjct: 4 LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61 Query: 62 QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119 + +I G +N ++ + ++ + V+ + +GL V I Sbjct: 62 EYTEVIKLTQGVSALNDDQLTQ--VKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIE 119 Query: 120 -------ARSPLFHGKDNKFSHDVFVSR------LAREGINEKEYIDHYT---------- 156 ++P + + F D+ L + +Y+++Y Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKM-PAQYVEYYQKMGAFWNFIE 178 Query: 157 ----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-------- 204 + + + + + + A E V + + Sbjct: 179 KTLIQSTLAEKYQNLIAKSLISNPVAAEDAFTSRTEQSDVLLAAIPYSSISDSTITVSNS 238 Query: 205 ---------------------------IADPSNA-------VLTQWFE-----KYKDNYR 225 + PS +T++ + + Sbjct: 239 EIKDLYNKKKSSFEQPVETRNIKYIDVLVTPSEEDRKEVLNEVTEYANQLGTAADMNTFI 298 Query: 226 APE-------YKRISYILFDVHEKEKKIEISNDELQA-EYEKNKEKY---------FSPE 268 I+ ++ + ++ +E+ Y + + Y +P+ Sbjct: 299 RSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYYNQADDSYNAFKIIAKQTAPD 358 Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321 Q+ + A D F +LK G F +A++ G++ L + + + Sbjct: 359 SIQYRQIQVYAEDAAKTATLADSIFNALKDGADFADIAKKYGQTGEATWLTARNYEGAAL 418 Query: 322 DVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 D A I +L + + + + G VI V + K V I + +K Sbjct: 419 DADNAKYINTLINSNVKELSNLQIGQAN-VILQVLDKKAMKDKYKVAV---IKRPVEFSK 474 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 E + Y +F+A T+MD+I + L ++ A V + + Sbjct: 475 --ETYNKAYNDFSQFVAQNTTMDKIVANAEESGYRL--LERADFRSAEHRVGGVKGTREA 530 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 L +F + + M V +++ PA R + V +K + K Sbjct: 531 LKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDK----- 585 Query: 500 SSKANQLVLEYSKEGKNFRDI---GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 KA +L+ E K + + + S+ + S Sbjct: 586 --KAEKLIAE-MKGANSIDQVKNMANAVSDSVKHITFSAPAYVSVTRASEPALGAYASKA 642 Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 PI+ + +V N + + K M S I L + V Sbjct: 643 EVNKLTGPIKGNAGVYMIQVYNKEKSAEEFDAKNEENNLSNMAGRYASSFINDLYKKAEV 702 Query: 617 T 617 Sbjct: 703 K 703 >gi|126653292|ref|ZP_01725403.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905] gi|126589966|gb|EAZ84095.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905] Length = 323 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 47/375 (12%), Positives = 111/375 (29%), Gaps = 116/375 (30%) Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70 + +A + L + + F+ W + + + V ++ + ++ + ++ G Sbjct: 32 SVIAVLLLGNI-LWFIAWAIPNKSQEIGSDEQVAAIDGDVITRQEWMIAMEERYG----- 85 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 K+ L NLV+ + +++ + ++ + E+A + Sbjct: 86 ----------------KETLQNLVNESVMEKAAKTYKIKVTDQEIDLELALM---RSAQD 126 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 KF A + ++ ++ L V+ Sbjct: 127 KFDT-------AMQNLSAEQLRQKIRSQLILDKVL------------------------- 154 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 S + +++E+ + Y R ++ Sbjct: 155 ------------TKDVVISEESIEKYYEENQGLYNTKTSYRTNF---------------- 186 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 + +K ADEA LK G F LA E + Sbjct: 187 ------------------------IEVDAKKAADEALGELKNGSDFSVLAREISLDSASA 222 Query: 311 SLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSF 364 SLG + D ++ +++ S K + + G Y I V + + ++ Sbjct: 223 SLGGDVGFLTENQENVDPAIINAVKS-TKANEVSKAFKLDNGHYGIVQVQEVLEGQSFTY 281 Query: 365 QEVKKDIANQMRITK 379 +VK+ I ++ + + Sbjct: 282 DDVKEHIERELALEQ 296 >gi|164688876|ref|ZP_02212904.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM 16795] gi|164602080|gb|EDQ95545.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM 16795] Length = 351 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 92/236 (38%), Gaps = 48/236 (20%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEK-YKD---NYRAPEYKR--------ISYILFD----- 238 V+ + +P++ + + + K N E + ++YI Sbjct: 111 VIYQKAKEVKVEPTDKEIQEQVDDFNKSINSNETTKEQAKKAGITDKFLTYIFTRELANS 170 Query: 239 --VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--------------- 281 K ++ + L+ EYE NK+ Y + T ++ + Sbjct: 171 AYQEYFNKHTKVDDATLKKEYESNKQAYNT---VTASHILISTKDSDGKELSAKKKAEAK 227 Query: 282 -EADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKG 336 +A+E Q K G+ F +LA++ + S LG+F+ + + + + F L KG Sbjct: 228 KKAEEVLQKAKNGEDFAKLAKKYSEDTSNAENGGELGAFTYPQMVE-EFSKAAFKL-NKG 285 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 D + ++ S+GY I V++ +F VK + + K SE+V++ + + Sbjct: 286 DISDIVETSYGYHIIKVTD----KADTFDAVKNSVKTAVLSNKYSEQVQKLFDDAK 337 >gi|298481511|ref|ZP_06999703.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22] gi|298272375|gb|EFI13944.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22] Length = 713 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 94/722 (13%), Positives = 210/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L E Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + Y K K + Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I +L S +++ G VI V+N K V I ++ Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 PI+ V +V K+ + + LT M + ++ L + + Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|222112631|ref|YP_002554895.1| sura domain-containing protein [Acidovorax ebreus TPSY] gi|221732075|gb|ACM34895.1| SurA domain protein [Acidovorax ebreus TPSY] Length = 471 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 128/401 (31%), Gaps = 64/401 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + ++ + I+ + G V E L K++L+ L+ Q Sbjct: 70 VAVVNSEPITNNEVRQRTERVVQQIASQGGKVPPQEL-----LAKEVLERLILEKIQVQQ 124 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 ++ G++ D V + N S D RLA +GI+++ + + L Sbjct: 125 AKETGIKVDDYAVSQAEQSV----ARQNSISVDEMHRRLAADGISKERFREELRNQLLAL 180 Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-------------NRHVPAIADP 208 + +R S+L +DQ R + + LN V + Sbjct: 181 RLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGHILVKVPENAGPDEVAQRSAR 240 Query: 209 SNAVLTQW-----FEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDE---------- 252 + L + F Y APE + ++ ++ ++ + Sbjct: 241 AQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADRYPELFVNATQQASVGSVVGP 300 Query: 253 ---------LQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSL-----KKG 293 L+ + + ++ +++A E + L + G Sbjct: 301 VRSPAGFHILKVVDKTQSGVPTTAVQSHARHILLRTNANLSERQAAERLEDLRDRVARGG 360 Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA E G + LG S +++ +L + G+ + + FG + Sbjct: 361 ADFAALAREYSQDGSAKDGGDLGWASPGRYV-PEFEEALNAL-RPGEISRPVVSRFGVHL 418 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + ++ + + + +R K E + Sbjct: 419 IQLLERREAKLTQREQ-RDMVRDTVREKKLDEAFATWIQEA 458 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 112/371 (30%), Gaps = 46/371 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L + V G++ + + QA++ S+ ++ R Sbjct: 114 RLILEKIQVQQAKETGIKVDDYAVSQAEQSVARQNSISVDEMHRRLAADGIS-------- 165 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVEQ 274 K+ +R ++ + + E ++ +S+ E+ E+ + + Sbjct: 166 -----KERFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGH 220 Query: 275 LVFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321 ++ A EA ++ G F +A E + + G + Sbjct: 221 ILVKVPENAGPDEVAQRSARAQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADR 280 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA- 380 L + A G + G+ I V + S + V+ + + T A Sbjct: 281 YPELFVNATQQASVGSVVGPVRSPAGFHILKVVDKTQSGVPT-TAVQSHARHILLRTNAN 339 Query: 381 --SEKVKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 + E + L + +A G ++R G +P E Sbjct: 340 LSERQAAERLEDLRDRVARGGADFAALAREYSQDG----SAKDGGDLGWASPGRYVPEFE 395 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKT 495 + L + + ++ P S V + + + R+ KL E V+ + K Sbjct: 396 EALNAL--------RPGEISRPVVSRFGVHLIQLLERREAKLTQREQRDMVRDTVREKKL 447 Query: 496 AEEVSSKANQL 506 E ++ + Sbjct: 448 DEAFATWIQEA 458 >gi|222529840|ref|YP_002573722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor bescii DSM 6725] gi|222456687|gb|ACM60949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor bescii DSM 6725] Length = 340 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 112/370 (30%), Gaps = 94/370 (25%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQ------KIGFVVNSERARSVGLDKKILDNLV 94 V+ V ++V + + Q + V N + R + L ++ L Sbjct: 36 RVVLEVNGEQVTKREYKIRFNALKENAIQFSSRTDILDQVFNGKTYREL-LKDELFTILT 94 Query: 95 SGATLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 Q + + I N+ F L + Sbjct: 95 EELLCLQEARKRNINLTKQEEEEIKKYIQELKA-----NEEMRGYFNQYLRKI----DSD 145 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 +H+ + L +T ++ + + S++ Sbjct: 146 ENHFYRDLYKTRLINKLYSSIT------------------------------SKTTVSDS 175 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 + ++ K+ ++ ++I I K+E ++ + Sbjct: 176 EIVNYYNTNKNQFK---KRKIIDIFL-------KVENEEEDARK---------------- 209 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSF------SKEYIPDVS 324 ++ A++ LKKG+ F +L ++ + S + G KE Sbjct: 210 --------REIANKIVSELKKGENFEKLVKKYSEDDSASTTKGIIDYFRKGEKEAEYGSV 261 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + +F LA G + VI GY I V + K + EVK++I +++ K E Sbjct: 262 FEEEVFKLA-VGQISNVIKTVKGYHIVKVLDEK---YMPLDEVKEEIQSKLMKQKKDEAF 317 Query: 385 KEDYKRLEEF 394 + + L++ Sbjct: 318 RLYIENLKKL 327 >gi|288925729|ref|ZP_06419660.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17] gi|288337384|gb|EFC75739.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17] Length = 716 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 84/701 (11%), Positives = 198/701 (28%), Gaps = 136/701 (19%) Query: 17 FLVVLFVPFLIWG-LSDALFSVSGSS------TVVSVGRQKVPFSSFINSWKQELGMISQ 69 +++ + F ++ +++ LF SS V V +K+ F + +I Sbjct: 12 LILICIIGFGLFAFIAEELFRSCESSRNDQRQQVGEVLGEKISVQDFQKLLDEYQEVIKM 71 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--------EIAR 121 + G SE + + + + V +++ +++GL + + + Sbjct: 72 QQGTETLSEE-QLNQVKDMVWNTYVQSKLVEKEAKELGLTVTDTELQDVLKAGTNPMLLQ 130 Query: 122 SPLFHGKDNKFSHDVFVSRLAR-----EGINEKEYIDH-------------YTKMLSRTD 163 +P + + +F LA +N + + + L Sbjct: 131 TPFVNQQTGRFDAASLQKFLADFKANKAAVNPQMQEQYQKIYNYWTFIEKTLRQQLLAQK 190 Query: 164 VVGMFVGGMRPSNLLLDQA----------------------------------------K 183 G+ + + A Sbjct: 191 YQGLLAHCFLSNPVEAKMAFEDENQESQINLAAFPYSDIADNKVTVEESDLKAKYDQLKA 250 Query: 184 RFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 RFY E+R + Y+ + PA + + E R S L + Sbjct: 251 RFYQPMESRDIKYVDIEVSASPADRAALQKEFAGYRTQLAAAADPAEVVRKSGSLVEYIG 310 Query: 242 KEKKIEISNDELQAEYEKNK----------------------EKYFSPEIRTVEQLVF-- 277 + ++ A+++ K P+ + Sbjct: 311 VPVPRQFFPQDVAAQFDSMAVGVTSAVKESTLDNSLTIVRLLGKVSLPDSVQFRSIQIGG 370 Query: 278 ----PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI-PDVSLADSIF 330 AD + +L+ G F LA++ G + + + + + S+ Sbjct: 371 ETAAKASATADSVYTALQGGADFEALAKKYGQTGAKTWATAQQLVGSLMQSNTPDQKSMV 430 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSN----IKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + + G+ Y + ++ ++ + +F E + + + + Sbjct: 431 NAVRNGEV-------NKYHLVKLTQGSIIVQVTARKAFSENYTAAVIKKTNDFSKDTYRT 483 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 Y + F++ ++ +I + + L ++ VA I + L +F Sbjct: 484 VYNKFASFVSANSTGADIEKNAEKAGYRLQTLND--MTTSTHNVANIHSTREALKWIFEA 541 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPA--RDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + + + V + + A RD +V +K + K AE++ +K Sbjct: 542 KEGEVSPMYECGDNNHLLIVVLDKIHNAGYRDMNDAQVKEMLKAEVIRDKKAEQLMAKV- 600 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMV 560 +G K GA + NQ+ V + Sbjct: 601 --------KGVTGISAAKAKGAKVSMVNQVTFAAPVFVPLTGSSEPALSGAVAATKKGQF 652 Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNK 600 ++ +F+VT + P + + + L Q + Sbjct: 653 STHAVKGAAGVYLFQVTGRTMRPGKFDDKAQEAKLAQRAMQ 693 >gi|210613468|ref|ZP_03289727.1| hypothetical protein CLONEX_01934 [Clostridium nexile DSM 1787] gi|210151168|gb|EEA82176.1| hypothetical protein CLONEX_01934 [Clostridium nexile DSM 1787] Length = 245 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 74/169 (43%), Gaps = 6/169 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 +R + E K + +S +E++A YE NK+ + + + + ++ ++++ + +S Sbjct: 76 RRDILAQMAMRETLKDVVVSEEEIEAYYEANKQHFTKGDTVSAKHILTDSEEKCNSILES 135 Query: 290 LKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G+K F A+E S LG F + + D+ F+ A+ G + Sbjct: 136 ITTGEKEFETAAKEFSTCPSGAKGGDLGEFGRGQMVK-EFEDAAFA-AEIGHVVGPVKTQ 193 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FGY + V + S +EVK+ I + K +E + +++ Sbjct: 194 FGYHLIKVEKKNEAIVASLEEVKETIRRTLLQQKQNEAYNTKVEEMKKK 242 >gi|311029004|ref|ZP_07707094.1| hypothetical protein Bm3-1_00328 [Bacillus sp. m3-13] gi|311032299|ref|ZP_07710389.1| hypothetical protein Bm3-1_17466 [Bacillus sp. m3-13] Length = 309 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 84/235 (35%), Gaps = 17/235 (7%) Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++V + +L++ + Y + + V+ V+ S + + + Sbjct: 50 QANIVATVGDTVITRKDMLEELEGMYGQEMLTKMVNNEVVKQIAKKYKVTVSEQSVDREW 109 Query: 218 EKYKDNY--------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 + K Y + E + I L K + I EL++ Y++NK+ Y Sbjct: 110 KMIKTMYSRSPLHTNTSEELVKEQIRSSLLLEELLVKDVNIPEAELESYYQENKQLYTIE 169 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDV 323 + + ++ + EAD + L+ G F LA E LG + E Sbjct: 170 DAFHLSHIIVETKDEADAVVKELEDGSNFTSLAMEVSTDELTANQGGDLGFLTHESQVYP 229 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + + + K+ ++ I Y I ++ T SF EVK I + + Sbjct: 230 TAYMAEAANLKEKTWSDPISVDEKYAIIYLYEKMDGVTYSFDEVKDQIRRHLAME 284 >gi|110598304|ref|ZP_01386579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium ferrooxidans DSM 13031] gi|110340112|gb|EAT58612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium ferrooxidans DSM 13031] Length = 438 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 136/453 (30%), Gaps = 100/453 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V VGR+ + S + + + + E A+ GL ++ILD L+ + Sbjct: 29 DRIVAVVGREVILKSEIDS---------RALMARLQSPELAKDTGLSRRILDGLIEQQII 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + ++ D + F +F+ R G D + Sbjct: 80 LSKAKIDSVKVDENAISATAGD--RFKQLRARFASK--EEMETRFGKTLPAIRDEIRTEI 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 +++ RS A ++ + ++ Sbjct: 136 RNQELIQTLRR------------------KRS------------AGVKVTSGEVMDYYNA 165 Query: 220 YKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + PE ++S I+ + +LQA Sbjct: 166 NREKFSLIPEGVKVSQIMKYPAVSA------DAQLQAL---------------------- 197 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAK 334 + + L+ G F LA + + LG K + S + FSL K Sbjct: 198 --TKIQAVRKELQGGADFALLARKYSQDPGSARLGGDLGYVQKGALI-PSFETAAFSL-K 253 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFT------VSFQEVKKDIANQMRITKASEKVKEDY 388 +G+ + +I +GY I + N +P+ V+F K D + +++ Sbjct: 254 EGEVSGIIETRYGYHIIQLLNKEPNAIHVRHILVAFDHSKDDFS-------GVDQLLNSI 306 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE---QLLFRVFG 445 + + L+ +S E++ + L E ++P + + Sbjct: 307 RA--DILSGKSSFSEMASKYSDDPSTAKLGGVISSIGGVGEYISLPSLRPELRAIITALK 364 Query: 446 KDDPLSKDHTVALPDGS--YMWVQIKESIPARD 476 +S + P G Y +++ E + A Sbjct: 365 NPGDISPPSKIDPPQGESFYTIIKLNERVAAHT 397 >gi|327438069|dbj|BAK14434.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris StLB046] Length = 324 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 47/363 (12%), Positives = 96/363 (26%), Gaps = 116/363 (31%) Query: 25 FLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81 F++W L + G + +V + ++ + G Sbjct: 45 FVLWLLPSDETTSEKEDGGEKIAAVEGDPITRQQWLAEMENRYG---------------- 88 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 K+ L +LV+ A +++ E L+ + EIA ++ H Sbjct: 89 -----KETLQSLVNEAVMEKAAEKYKLDVKEEEIDLEIALLRSAQDSNDSTLHS------ 137 Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 ++ ++ L V+ Sbjct: 138 ----LSPEQLRQKMRAQLILDKVL------------------------------------ 157 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 +++E K Y P Sbjct: 158 -TNDIVVKENEAKKYYEDNKSIYNIPTT-------------------------------- 184 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----S 316 ++ ++++A+ + LK G F LA E + SLG S Sbjct: 185 --------HRTSIIIVNSKEDAERVEKELKDGSDFAVLAREHSLDTASASLGGDIGFISS 236 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + D ++ + L +K P + Y I V+ + SF EV+ + Q+ Sbjct: 237 SQSAVDPAILPEVEKLKEKETSKPFVLSDGRYAIVKVTENMEGQSFSFDEVEGHVKRQLA 296 Query: 377 ITK 379 + + Sbjct: 297 LEQ 299 >gi|56476305|ref|YP_157894.1| rotamase [Aromatoleum aromaticum EbN1] gi|56312348|emb|CAI06993.1| probable rotamase [Aromatoleum aromaticum EbN1] Length = 256 Score = 95.1 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 14/155 (9%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLA 300 + + Y + E++ PE + ++ ++ + E Q+ K + F +LA Sbjct: 72 DKAAREFYVAHPEQFVQPEQVHAQHVLIKSEGRSKEEALVLAKQVVAQANKDSQDFGKLA 131 Query: 301 ----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 E+ + LG F++ + D+IF L G+ + FG+ + + Sbjct: 132 AEFTEDPSGKANGGDLGFFARGSMVKP-FEDAIFGLKSPGEIVGPVESQFGFHVIRLVER 190 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K T+ F EVK + + + ++Y R+ Sbjct: 191 KAETTIPFDEVKDKLVRDETLKYRRMAIGKEYGRI 225 >gi|312890294|ref|ZP_07749831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter paludis DSM 18603] gi|311297064|gb|EFQ74196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter paludis DSM 18603] Length = 704 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 87/645 (13%), Positives = 193/645 (29%), Gaps = 95/645 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINS 59 + +R+ + + + F+ + + ++ V V +K+ F Sbjct: 4 MGFLRERF-GKIVAAIIGLALFAFIATEVVQYGKSYFNGSANDVGEVDGEKIKKDDFDKK 62 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 Q Q+ G + + S + + VS L + I+ +GL I Sbjct: 63 VDQNTANFKQQSGQGAINPQITSY-IQETTWSQTVSQLILQKEIDKLGLVVGVDETKDMI 121 Query: 120 A----RSPLFHG----KDNKFSHDVFVSRLAREGI---------NEKEYIDHYTKMLSRT 162 + + + +F L R + ++ + Sbjct: 122 SGPTPNQLILQNFGNQQTGQFDRSALNEFLGRLRVAKADDPIKATWANFVTQMIEGKKIE 181 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYK 221 + + G+ ++L + + Y+ L+ +P ++ +++++K Sbjct: 182 KYITLVKNGLYVNSLDAKDDYEAKNKLVNFKYVALDYASIPDNKITLTDDDYKSYYDEHK 241 Query: 222 DNYR-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 ++ E + ++Y+ FD + +++ +L+ + Sbjct: 242 KQFKNQQELRSLAYVAFDASPSKDDSAAVKEQI-------------------TKLIPEFK 282 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 D++ F+ + E L G + DS+ A KG Sbjct: 283 AATDDSL--------FVAVNAESKTPLIYQKKGQLDPQI-------DSLMLNASKGFTYG 327 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALG- 398 + Y +A + + + S VK I ++ + EK L++ + G Sbjct: 328 PYFSNGYYKVAKLVDSRFSP----DSVKARHILISIQAEGSPEKAVAKADSLKKLIQSGK 383 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 + E++ + SID G + IP E +F D + Sbjct: 384 KTFAELAP---LNSIDKGSAVKGGDLGTFARGSMIPVFEDAVFN------GKKGDIKIVT 434 Query: 459 PDGSYMWVQIKESIPAR--------DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 ++I + + D+ LE + KT SKA + Sbjct: 435 SQYGVHLIEILDQKGSSKVVKVAVVDKPLE----------PSSKTKSAAYSKAQAFLGSL 484 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENG 568 +K NF + K G + T +N + + D + F E G Sbjct: 485 NKN--NFDEEVKKAGLTKKTAEDLNGLASSAPGLDNIRDLVRWAFKADKGDFTDQVYEPG 542 Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL-DSVIAYLKS 612 YV+ ++T K V + + + + L++ Sbjct: 543 NEYVIAQLTEIKPKGVLSLEAVKKQIQPAVLNIAKAKQLAPKLQA 587 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 23/242 (9%) Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDI-SLGSFSKEYIPDVSLAD---SIFSLAKKGD 337 +A SL K F + ++ G + L + ++ D F K Sbjct: 476 KAQAFLGSLNKN-NFDEEVKKAGLTKKTAEDLNGLASSAPGLDNIRDLVRWAFKADKGDF 534 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 V YVIA ++ IKP +S + VKK I + K K+ +L+ Sbjct: 535 TDQVYEPGNEYVIAQLTEIKPKGVLSLEAVKKQIQPAVLN---IAKAKQLAPKLQAATNG 591 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 +++D+++++ + + FA V + +L+ +FG +K V Sbjct: 592 SSTIDQVAQKSNTQVTPVQNIVFA-----NPIVPGAGQENKLIGAIFGS--QPNKVSKVI 644 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 D + + + + + + +A +LE K N Sbjct: 645 EGDRGVYVYVVDSFLNPAPLN--------NALRQKEQIGQILLQRAEGGILEALKNKANV 696 Query: 518 RD 519 +D Sbjct: 697 KD 698 >gi|319943017|ref|ZP_08017300.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] gi|319743559|gb|EFV95963.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC 51599] Length = 491 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 51/402 (12%), Positives = 113/402 (28%), Gaps = 59/402 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S G +Q G V L K++L+ ++ Sbjct: 85 DRIVAVVNQGVITESELQAQIHLIEGRAAQTPGAGVPPPD----ELRKQVLEQMILQLAQ 140 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158 +Q+ D GL+ V +A ++N S RL EG++ + Sbjct: 141 EQYAADYGLKPSDAEVDRAVADV----AQNNGLSTQQLTERLKDEGVSLDTFRRQLVAEI 196 Query: 159 ----LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 L + + L ++ + + I+L + + Sbjct: 197 VSARLRERETASNVSISEGEIDAELAKSGKVSQPEYDIRQILLKLPEGADQKEVARQKAR 256 Query: 215 ---------------QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE------- 252 ++ + A + + D + + Sbjct: 257 ADELVAKARKGADFGALAQENSEAGDAATGGSMGWRKADDLPGLFADTVRKLKPGEISAP 316 Query: 253 --------LQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL--------KKGK 294 + ++ + E+ ++ P + + A EA + L Sbjct: 317 VRSPAGFHILKLQDRRDGGATTVELTHARHILLPANSPETAAEAERRLSLFRRDIEAGKA 376 Query: 295 KFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+E G + LG ++ SL G+ + + FG + Sbjct: 377 DFAKLAKEFSSDGSAAKGGDLGWLYPGDTV-PEFEQAMKSLH-DGEISEPVQTQFGVHLV 434 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 V + + ++ ++R K E ++ + L + Sbjct: 435 QVLGRRTDTESP-ERLRNAARAKLREAKGGEAYQQWLRELRD 475 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 61/396 (15%), Positives = 117/396 (29%), Gaps = 48/396 (12%) Query: 148 EKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 E + + + G++PS+ +D+A +N + L R Sbjct: 123 PDELRKQVLEQMILQLAQEQYAADYGLKPSDAEVDRAVADVAQNNGLSTQQLTERLKDEG 182 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE--------- 256 D +R I E + IS E+ AE Sbjct: 183 VSL-------------DTFRRQLVAEIVSARLRERETASNVSISEGEIDAELAKSGKVSQ 229 Query: 257 --YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDIS 311 Y+ + PE ++ V + ADE +KG F LA+E G + + S Sbjct: 230 PEYDIRQILLKLPEGAD-QKEVARQKARADELVAKARKGADFGALAQENSEAGDAATGGS 288 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 +G + +P + AD++ L K G+ + + G+ I + + + + + Sbjct: 289 MGWRKADDLPGL-FADTVRKL-KPGEISAPVRSPAGFHILKLQDRRDGGATTVELTHA-- 344 Query: 372 ANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 + + + E E +RL + A ++++ D Sbjct: 345 RHILLPANSPETAAEAERRLSLFRRDIEAGKADFAKLAKEFSSDGSAAKGGDLGWLYPGD 404 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 +P EQ + + V G VQ+ + E + + Sbjct: 405 T----VPEFEQAMKSL----HDGEISEPVQTQFG-VHLVQVLGRRTDTESP-ERLRNAAR 454 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 + K E +L E + D Sbjct: 455 AKLREAKGGEAYQQWLRELRDRTYVEYRQKSDAAST 490 >gi|295086974|emb|CBK68497.1| hypothetical protein [Bacteroides xylanisolvens XB1A] Length = 713 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 92/722 (12%), Positives = 210/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L E Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + Y K K + Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASIGTIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I ++ +I + + + VI V+N K V I ++ Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 PI+ V +V K+ + + LT M + ++ L + + Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGRDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|121596392|ref|YP_988288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] gi|120608472|gb|ABM44212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] Length = 471 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 129/401 (32%), Gaps = 64/401 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + ++ + I+ + G V E L K++L+ L+ Q Sbjct: 70 VAVVNSEPITNNEVRQRTERVVQQIASQGGQVPPQEL-----LAKEVLERLILEKIQVQQ 124 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 ++ G++ D V + N S D RLA +GI+++ + + L Sbjct: 125 AKETGIKVDDYAVNQAEQSV----ARQNSISVDEMHRRLAADGISKERFREELRNQLLAL 180 Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-------------NRHVPAIADP 208 + +R S+L +DQ R + + LN V + Sbjct: 181 RLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGHILVKVPENAGPDEVAQRSAR 240 Query: 209 SNAVLTQW-----FEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDE---------- 252 + L + F Y APE + ++ ++ ++ + Sbjct: 241 AQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADRYPELFVNATQQASVGSVVGP 300 Query: 253 ---------LQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSL-----KKG 293 L+ + + ++ +++A E + L + G Sbjct: 301 VRSPSGFHILKVVDKTQSGVPTTAVQSHARHILLRTNANLSERQAAERLEDLRDRVARGG 360 Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA E G + LG S +++ +L + G+ + + FG + Sbjct: 361 ADFAALAREYSQDGSAKDGGDLGWASPGRYV-PEFEEALNAL-RPGEISRPVVSRFGVHL 418 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + ++ ++ + + +R K E + Sbjct: 419 IQLLERREAKLTQREQ-REMVRDTVREKKLDEAFATWIQEA 458 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 113/371 (30%), Gaps = 46/371 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L + V G++ + ++QA++ S+ ++ R Sbjct: 114 RLILEKIQVQQAKETGIKVDDYAVNQAEQSVARQNSISVDEMHRRLAADGIS-------- 165 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVEQ 274 K+ +R ++ + + E ++ +S+ E+ E+ + + Sbjct: 166 -----KERFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGH 220 Query: 275 LVFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321 ++ A EA ++ G F +A E + + G + Sbjct: 221 ILVKVPENAGPDEVAQRSARAQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADR 280 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA- 380 L + A G + G+ I V + S + V+ + + T A Sbjct: 281 YPELFVNATQQASVGSVVGPVRSPSGFHILKVVDKTQSGVPT-TAVQSHARHILLRTNAN 339 Query: 381 --SEKVKEDYKRLEEFLA-LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 + E + L + +A G ++R G +P E Sbjct: 340 LSERQAAERLEDLRDRVARGGADFAALAREYSQDG----SAKDGGDLGWASPGRYVPEFE 395 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKT 495 + L + + ++ P S V + + + R+ KL E V+ + K Sbjct: 396 EALNAL--------RPGEISRPVVSRFGVHLIQLLERREAKLTQREQREMVRDTVREKKL 447 Query: 496 AEEVSSKANQL 506 E ++ + Sbjct: 448 DEAFATWIQEA 458 >gi|225010080|ref|ZP_03700552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium MS024-3C] gi|225005559|gb|EEG43509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium MS024-3C] Length = 706 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 92/605 (15%), Positives = 206/605 (34%), Gaps = 77/605 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 LE IR+ RT V + + + F+I G+ + S G S + SV +++ F Sbjct: 4 LEKIRQ--RTTVLILIIGLALFAFVISGVFTNSGSGSPMGGSAIGSVNGEEISIDDF--- 58 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 +Q+L + +Q+ G +A +V L ++ ++ + + L+Q IED+G+ + ++ I Sbjct: 59 -RQKLEVAAQRAGS-----QATTVQLVNQVWNSSLRTSLLNQEIEDLGISVEGDQIMNFI 112 Query: 120 ARS------PLFHGKDNKFSHDVFVSRL----AREGINEK---EYIDHYTKMLSRTDVVG 166 + P F ++ FS +F++ + A + + Sbjct: 113 KNTPSYSNQPEFQDENGIFSESLFIAAVADWKANNPYRYSLWLQDELAIMQSAKEQMYFN 172 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYR 225 + G+ + + + + Y+ + VP + + + K ++ Sbjct: 173 LVKAGVGTTLEEGKFDYKLANDKVDISYVRMPFSAVPDTTITVTAGEIESYISKNPALFK 232 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 + I + +E+ K ++ + + +E +E Sbjct: 233 QEPARDIRLV--------------------YFEEKASKEDEQAVKDAVVGLLSDTEEYNE 272 Query: 286 AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPV 341 + +K F+ + G L SDI+ + + VS DSI SL G Sbjct: 273 NTGTTEKVAGFLN-TTDLGAFLERNSDITYDTIFRAKNEIVSTFKDSIISL-NPGQTFGP 330 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEV------KKDIANQMRITKASEKVKEDYKRLEEFL 395 + Y ++ + K + TV + + ++ + TK +E K L Sbjct: 331 YKENNAYKVSKLVAKKNNGTVKASHILISFVGAERVSPTVTRTK-----EEARKEANRLL 385 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 + + D P G +E P +F L + Sbjct: 386 IEAKKSTTVFAELARDNSDGPTASRGGDLGFFQEGQMTPKFNDFVFSNSVDAIGLVETEF 445 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 + V++ + + ++ T + + +T + ++A + +E ++ K Sbjct: 446 ------GFHIVRVDDKQD-----IFQIATLSRDVAPSEQTINTIFTQATKFEMEVTENPK 494 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVV 573 + I K + + N++ MD + F+ ++ YV+ Sbjct: 495 EYVGIAKEGNFDVRSVNKLLAMDENLPGLAEQRGVVQWAFNEDTDLGAIKRFNVNNGYVI 554 Query: 574 FKVTN 578 ++T Sbjct: 555 VQLTA 559 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 47/352 (13%), Positives = 110/352 (31%), Gaps = 30/352 (8%) Query: 278 PNQKEADEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333 +KEA+ KK F +LA + + LG F + + D +FS + Sbjct: 376 EARKEANRLLIEAKKSTTVFAELARDNSDGPTASRGGDLGFFQEGQMT-PKFNDFVFSNS 434 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR-ITKASEKVKEDYKRLE 392 D ++ FG+ I V + + F + ++ + + + + E Sbjct: 435 V--DAIGLVETEFGFHIVRVDDKQDIFQI------ATLSRDVAPSEQTINTIFTQATKFE 486 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + + E K + D+ V+ + + + + ++ F +D L Sbjct: 487 MEVTE--NPKEYVGIAKEGNFDVRSVNK--LLAMDENLPGLAEQRGVVQWAFNEDTDLGA 542 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512 + +G Y+ VQ+ + + + + K KA ++ +K Sbjct: 543 IKRFNVNNG-YVIVQLTARYRSGTMTVADASATALPILRKEK-------KAVWIL--KNK 592 Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLS 570 G G S+ T + ++ G + + + F+ + Sbjct: 593 GGNTLESFAAASGQSVETASALSVKSPIIPGAGREAYVVGKAFNLTEGATSSLLVGETGV 652 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622 ++V + + + L + S LK ++ + + Sbjct: 653 FLVQLNKKQEAVALDSYATYAEALKAGTQNSIFFSSYNALKETATIEDNRAV 704 >gi|313681760|ref|YP_004059498.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] gi|313154620|gb|ADR33298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] Length = 280 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 10/160 (6%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFI 297 I++ E++A ++ N ++ E ++ ++ +A S+K K+F+ Sbjct: 115 DAIKVDAKEVKAYFDTNPNEFIDKEKIHARHILVRSKTQAQSIIASMKTLSGDRLKKEFM 174 Query: 298 QLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A+ + LG F + + S D+ F+L + + FGY + +V Sbjct: 175 AQAKLFSIGPSAARGGDLGYFPRGQMV-ASFNDAAFALKTGTVSSIPVQSQFGYHVIYVE 233 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + KP+ + F VK I ++++ K E +++ L E Sbjct: 234 DRKPAKKMGFDAVKSFIEQRLKMDKFKETMEKKMAALHEK 273 >gi|226940618|ref|YP_002795692.1| signal peptide protein [Laribacter hongkongensis HLHK9] gi|226715545|gb|ACO74683.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9] Length = 263 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K+ +S+ +++AEY+K K + Q++ ++ EA+ LKKG F + Sbjct: 106 DDLAKQNPVSDAQVRAEYDKLKSALSGQKEVQARQIIVGSEAEANAVIAQLKKGGNFEAI 165 Query: 300 AEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+++ K + +G + + LAD++ L K G+ I V N Sbjct: 166 AKQKSKDPAAKQNGGDMGWGNLGVMAKP-LADTLKPLGKGQYTQQPFKSDLGWHIFKVEN 224 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 ++ + F EVK ++ QM+ + + + + + Sbjct: 225 VRDAKVPQFDEVKPQLSRQMQGAAVEKALNDLRGKAK 261 Score = 37.3 bits (85), Expect = 8.8, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 2/131 (1%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN-KFFGY 546 K+ + + ++AN ++ + K G NF I K M N Sbjct: 134 KEVQARQIIVGSEAEANAVIAQLKKGG-NFEAIAKQKSKDPAAKQNGGDMGWGNLGVMAK 192 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 + P ++ L + +FKV N + V + D+ L++ M ++ Sbjct: 193 PLADTLKPLGKGQYTQQPFKSDLGWHIFKVENVRDAKVPQFDEVKPQLSRQMQGAAVEKA 252 Query: 607 IAYLKSQYSVT 617 + L+ + + Sbjct: 253 LNDLRGKAKIQ 263 >gi|295700292|ref|YP_003608185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] gi|295439505|gb|ADG18674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1002] Length = 265 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 5/170 (2%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 +A I + + + KK +S+D+L+A Y K K S V ++ +Q EA Sbjct: 95 QAQATWEIEIVRAYMQDFLKKNPVSDDQLKAMYNDMKAKGGST-QYKVRHILVKDQGEAK 153 Query: 285 EAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + L KG F LA+E + + LG + + AD++ L K Sbjct: 154 DIIAKLNKGASFGDLAKESIDADTRYNGGDLGWITSSKVVKP-FADAVSHLHKGEYTRMP 212 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +G+ + V + +P SF+++K + Q + VK + Sbjct: 213 VKTGYGFHVIEVDDTRPLQVPSFEDMKPMLYQQAQAELVDRMVKNLRAKA 262 >gi|325662683|ref|ZP_08151280.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471022|gb|EGC74249.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium 4_1_37FAA] Length = 246 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + E K + ++++E+ A YE+NK+++ E + + ++ ++++ +S+ G+K Sbjct: 83 LAMRETLKDVTVTDEEVAAYYEENKQQFTKGETVSAKHILVDSEEKCTSVLESITSGEKA 142 Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A+E S LG F K + + A+ G + FGY + Sbjct: 143 FEDAAKEASTCPSGARGGDLGEFGKGQMVKEFEEAA--FAAEIGHVVGPVKTQFGYHLIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + +F EVK+ I + K + + L+E Sbjct: 201 VEKKNEASVAAFDEVKEAIKRNLIQQKQNAAYNAKVQELKEK 242 >gi|299537572|ref|ZP_07050865.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1] gi|298726941|gb|EFI67523.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1] Length = 326 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 101/276 (36%), Gaps = 28/276 (10%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVHEK 242 ++ + + + ++ + + ++ + +K + + Sbjct: 57 MVTEKVLADKYEVTDKEIKEAYDTTASQFGDGFTQALAESGLTEQGFKDSLRVQLLQEKA 116 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 K I ++++ YE+ K + ++ ++K A E + +K G KF +A+E Sbjct: 117 LKDQAIKEEDVKKYYEQMKTELNG------RHILVADEKTAKEVIEKIKGGAKFEDVAKE 170 Query: 303 Q----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 G + LG FS + D D+ ++L + + + SFGY + +++ + Sbjct: 171 YSTDTGSAQKGGELGWFSVGSMVD-EFNDAAYAL-ELNTLSEPVKSSFGYHVIEITDKRD 228 Query: 359 SF-TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 SF++ +++I + M + E L++ +A ++ +K + L Sbjct: 229 VKGVGSFKDEEENIRSTMLNKL--NQTGEAQTILKDIVAKMAKDADVKTSDKDLKEPLKF 286 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++ A E+ + +D D Sbjct: 287 FTTTSEEQAKAAEEAAKKAEENAPKEDSEDKAEDTD 322 >gi|296161011|ref|ZP_06843822.1| SurA domain protein [Burkholderia sp. Ch1-1] gi|295888710|gb|EFG68517.1| SurA domain protein [Burkholderia sp. Ch1-1] Length = 453 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 54/427 (12%), Positives = 122/427 (28%), Gaps = 78/427 (18%) Query: 30 LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 + S S TV V + ++Q+ V ++ L Sbjct: 28 VQAQALSGSSGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----L 82 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 +++L+ +V Q ++ G+ D V + R N + DV+ SR+ +G Sbjct: 83 RQQVLNQMVLERIQLQKAKEDGINIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQG 138 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193 + + L+ + + V + S+ + + R + Sbjct: 139 VPWSTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGLTSDLHLQH 195 Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226 ++ + + + K N+ Sbjct: 196 IFLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSK 255 Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277 PE+ + + L I ++ E+ ++ + S + V ++ Sbjct: 256 LPPEFVKAASTLRPGEINPDLIRTNDGFEIVRLVDRRTGQGTSSDAPKLVQTHVRHILLR 315 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326 +++ E + G F + A + G S LG S Sbjct: 316 VGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 374 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 ++ SL + G + + +GY + V + S S + + KA + + Sbjct: 375 RAMNSL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVAQQMDLARQAIGQRKAEQAYAD 432 Query: 387 DYKRLEE 393 + L + Sbjct: 433 WLRELRD 439 >gi|313203966|ref|YP_004042623.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter propionicigenes WB4] gi|312443282|gb|ADQ79638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter propionicigenes WB4] Length = 704 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 96/720 (13%), Positives = 218/720 (30%), Gaps = 124/720 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L+ IR S+ + + + + F++ + F V V + + + Sbjct: 4 LDRIR--SKGVLLVAVVGLALLAFIVGDFLKEGSTFFNKSKEIVGKVAGDDINIKEYTAA 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA---------------------- 97 +Q + + G +E + + + + ++++S Sbjct: 62 IEQMTEVYKIETGRAELNEEM-TTQIRQSVWESMMSEKILNAEAKKLGLAVSADELSDRL 120 Query: 98 -------------------------TLDQFIEDIGLEADHGRVWGEIARSPLF-----HG 127 L QF+ + + + +IA++ + Sbjct: 121 IGNNIHPLIMQRRTFAGENGQFSRPALVQFLSSLEQAPANEEMKQQIAQAKNYWNFWEKT 180 Query: 128 KDNKFSHDVFVSRLA----REGINEKEYIDHYTKMLSRTDVVGMFVG----GMRPSNLLL 179 N + + + ++ ++ K + + VV + ++ S+ + Sbjct: 181 VKNSILQEKYNALISKSVCANSLDAKMSFEDKKTSVDVAYVVQPYFAVPDADIKVSSSEI 240 Query: 180 DQAKRFYFENRSVDY-IVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILF 237 E D + P + W +K + ++ + + Sbjct: 241 KDLYNKKKEQFKQDANCSFSYVAFDIKPLPEDYKEGEAWMKKLEGEFKTTADV-AALVNS 299 Query: 238 DVHEKEKKIEISNDELQAEYEKN-------------------------KEKYFSPEIRTV 272 + S + A + + + + Sbjct: 300 NSDVMYDGRNYSERTVPALLKDFAFGSATGAVYGPSFVNDTYTMARVMQGGIMQSDSVKL 359 Query: 273 EQL--VFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEY-IPDVSL 325 + + + +AD ++K G F LA++ + + +G + P+ + Sbjct: 360 RHIFLLAKDATKADSLVSAIKGGADFGALAKKYSAVKQTAANGGEIGWMQEATQGPEKEI 419 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI--ANQMRITKASEK 383 FS +K FT I G I V + P+ VK I + +K+ K Sbjct: 420 TSQAFSKSKNDIFT--IKDEQGVQIFQVMDKTPARRK----VKLAILERKIVPSSKSYSK 473 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + D K+ L+ + D+ ++ + + V + +++A I Q++ V Sbjct: 474 IYNDAKQFAVDLS-ADNFDKKAKEKGYIVRPAAEVLRST-----EKIADINQSRQIIRWV 527 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 F + V ++ E R LE+V +K + K AE + Sbjct: 528 FNSS--KNDVSDVFDCGTKFVVAMTTELNKKGYRSLEKVSDQLKAEIIKDKKAESMIK-- 583 Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE--NKFFGYDGISQVFSGPVEMVK 561 L E SK G + + L S+ T +N + F I +V + V Sbjct: 584 -NLSAELSKTG-SLEGLASLLKDSVKTAPAVNFASYQLGTAGFEPAVIGKVTKTALGKVS 641 Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 PI+ V + +N +V P + L ++ L ++ +K + +T + Sbjct: 642 T-PIKGNAGVYVVRTSNKQVNPQAFNAQLEKMQLNARLSYSLSYTLFQDMKEKADITDNR 700 >gi|301382733|ref|ZP_07231151.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato Max13] gi|302063472|ref|ZP_07255013.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato K40] Length = 440 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V + L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMGQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ + + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V ++ S + DQ K E + I++ + A Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 201 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + I + Sbjct: 202 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291 + EK + + + V ++ + A + ++ ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G +L+ L + D + S +G+ + ++G Sbjct: 322 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + + A + +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|83648743|ref|YP_437178.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] gi|122070647|sp|Q2S9C1|SURA_HAHCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|83636786|gb|ABC32753.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] Length = 434 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 121/408 (29%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V +S + + + Q+ + E L +K+LD LV + Sbjct: 35 DRVVAVVNDDIVLYSELQDRASRIKDKLRQQ-KTPLPPEAV----LHEKVLDQLVLESIQ 89 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ ++ + K N + D F L+ EG+ + + + + Sbjct: 90 MQMADRGGIRVSDSQLNQTMQNI----AKQNGMTLDQFQQALSEEGVTYQSAREQIRREM 145 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAVLTQ- 215 + V V +R + ++ + E R+ +Y L + + +PS+A + Sbjct: 146 IISRVQQRSVDSRVRVTEKEVNDFLKSASAKEQRAEEYH-LAHILIALPENPSDAQRKEA 204 Query: 216 -----------------------WFEKYKDN------YRAPEYKRISYILFDVHEKEKKI 246 + + +R P+ + + Sbjct: 205 ESKVEKIRSQLDQGVDFKQLAITYSDASTATQGGDLGWRKPDQVPSLFADVAPKLAPGQT 264 Query: 247 EI-----SNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKEADEAFQSLKK 292 S A EK E V ++ +K +E + ++ Sbjct: 265 SEPIRNSSGVHFVAMLEKRGGVSKVVEQSKVRHILVQQNELRDEIAAKKLIEEIYGKVQA 324 Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + SL + + D + G + +FG+ Sbjct: 325 GEDFAELAKAYSDDAVSAAAGGSLDWVNPGDMV--PEFDQMMRETPVGAVSKPFQSTFGW 382 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + + + K E+++ + + Sbjct: 383 HILQVQDRREADIGDRLMA-SQARQVLHRRKYEEELQNWLSEIRDEAF 429 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 27/206 (13%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------- 278 + + + ++ ++ E+ + K E + ++ Sbjct: 142 RREMIISRVQQRSVDSRVRVTEKEVNDFLKSASAKEQRAEEYHLAHILIALPENPSDAQR 201 Query: 279 --NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + + ++ L +G F QLA + + LG + +P + AD LA Sbjct: 202 KEAESKVEKIRSQLDQGVDFKQLAITYSDASTATQGGDLGWRKPDQVPSL-FADVAPKLA 260 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASEKVK 385 G + I S G + + + ++ K ++ +++ K E++ Sbjct: 261 -PGQTSEPIRNSSGVHFVAMLEKRGGVSKVVEQSKVRHILVQQNELRDEIAAKKLIEEIY 319 Query: 386 EDYKRLEEF--LALGTSMDEISRREK 409 + E+F LA S D +S Sbjct: 320 GKVQAGEDFAELAKAYSDDAVSAAAG 345 >gi|328952685|ref|YP_004370019.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453009|gb|AEB08838.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109] Length = 316 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 43/355 (12%), Positives = 106/355 (29%), Gaps = 78/355 (21%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + S + K + ++ + ++ L+ L+ + Sbjct: 30 VAQVNDEVITLSELEQAMKYI------QANPAAGAKVKNNQAFRRQALEMLIDRKLAKEE 83 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + G+ + + K + LA++G+ ++ R Sbjct: 84 AKRYGITVPEKEIKKTVDDI---KQKYGFTDDETLSKALAKDGMTMEQ---------LRQ 131 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 ++ L V + S+A + Q++E+ Sbjct: 132 QLIEQIQQD------------------------RLMLSTVRSKVKVSDAEIQQFYEQ--- 164 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 YR + + + + ++ +E++A Sbjct: 165 RYRQADNR-VHIKIINLPVAAGSSAEEQEEVRAL-------------------------- 197 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 A+ ++G+ F +L E KS LG + I D + + +L + G+ Sbjct: 198 AERILIQARRGESFDKLMETYSKSTPNVPGGDLGYIRQSDI-DPRFFEFLSNL-RPGEIV 255 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + FG+ I + + K S E + +I + + ++ E + + + Sbjct: 256 -PLRAPFGFQIIKMVDAKVGKAKSLSEARGEIEQILIREQMAKLFSEYLQSIRQK 309 >gi|299148688|ref|ZP_07041750.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23] gi|298513449|gb|EFI37336.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23] Length = 713 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 96/722 (13%), Positives = 213/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + A L + Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATAQLATTTDDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + A Y K K + Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGAIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDALKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I +L S +++ G VI V+N K V I ++ Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWTFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASVA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 E PI+ V +V K+ + + LT M + ++ L + + Sbjct: 646 PENQLSAPIKGNAGVFVLQVYGRDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|322379924|ref|ZP_08054201.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5] gi|321147622|gb|EFX42245.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5] Length = 318 Score = 94.7 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 14/159 (8%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFIQ 298 K +I D+L+ Y+ NK ++ E + ++ + +A L K K+FI Sbjct: 151 KEDIPEDQLRKYYQDNKTQFVQQEAK-ARHILVKTEADAKRVISELNKTPKTRIEKEFID 209 Query: 299 LAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A + + LG F K + ++++F+L + FGY + + Sbjct: 210 IANRESIDPNTKNSKNGGDLGKFQKNQMA-PEFSNAVFALKPGSYTKTPVKTEFGYHVIY 268 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + T +F++ ++ I ++ + E VK + ++L Sbjct: 269 LMSKNEPKTPTFEQARQTIIGILKEHQFQEYVKGELEKL 307 >gi|28199704|ref|NP_780018.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1] gi|182682448|ref|YP_001830608.1| SurA domain-containing protein [Xylella fastidiosa M23] gi|81724959|sp|Q87AJ0|SURA_XYLFT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|28057825|gb|AAO29667.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1] gi|182632558|gb|ACB93334.1| SurA domain [Xylella fastidiosa M23] gi|307578730|gb|ADN62699.1| SurA domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 463 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 51/431 (11%), Positives = 120/431 (27%), Gaps = 66/431 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + G + E L +++L+ L+ Sbjct: 34 DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + I+ ++NK S D +L EGI+ E+ + Sbjct: 89 VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAV---- 212 + + F + S +D A + +I+++ + A Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQANSGAQYHLQHILVSLPDGATSEQIAIAQKKIN 204 Query: 213 -LTQWFEKYKDNYRA-------------------------PEYKRISYILFDVHEKEKKI 246 + +K + + A PE + + Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264 Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290 ++ E++ + + E ++ + + D + Sbjct: 265 RGTSGFQLLKLVEVRDSTAAAGPRQMATEY-HARHILVRITDKQKEAQAKAKIDTLRARI 323 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +A E + + LG F + + + +LA G+ + + Sbjct: 324 AGGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAA 381 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + + + + + I + + K E + + L + ++E + Sbjct: 382 GWHIVQRLGTRQTDV-TRENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIEEPAD 440 Query: 407 REKIVSIDLPL 417 S + Sbjct: 441 DHHTPSAAVTP 451 >gi|23098603|ref|NP_692069.1| post-translocation molecular chaperone [Oceanobacillus iheyensis HTE831] gi|46396906|sp|Q8CXK4|PRSA_OCEIH RecName: Full=Foldase protein prsA; Flags: Precursor gi|22776830|dbj|BAC13104.1| protein secretion (post-translocation molecular chaperone) [Oceanobacillus iheyensis HTE831] Length = 299 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 80/179 (44%), Gaps = 17/179 (9%) Query: 222 DNYRAPEY-KRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + E + I Y+ + + +EI+ ++LQ YE+ + + ++ N Sbjct: 96 QQFGGEEQLREIMYVSMLQEKAAAEDVEITEEDLQELYERKNTEI------QAQHILLEN 149 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335 +++ E Q ++ G+ F +LA+E LG FS + ++ FSL + Sbjct: 150 EEDVAEVQQKIEDGEDFGELAQEYSTDTGSAENGGDLGYFSAGSMV-PEFEEAAFSL-EA 207 Query: 336 GDFTPVIHGSFGYVIAHVSNI--KPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRL 391 G+ + + + G I V+++ K F++VKK++ ++ + + +++E +L Sbjct: 208 GEISDPVQSTHGTHIIKVNDVREKEESIGEFEDVKKELEREILLNRVDQTQIQEKINKL 266 >gi|225076364|ref|ZP_03719563.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens NRL30031/H210] gi|224952307|gb|EEG33516.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens NRL30031/H210] Length = 329 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 32/356 (8%), Positives = 97/356 (27%), Gaps = 90/356 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V + + + Q + + + + L +++L +++ + Sbjct: 52 SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + IA +P + Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + +V + + + S++ + ++ E Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K + + + +Y + Sbjct: 173 QAKQQ---------------------GVTLPEADPVRQYHAQHILIKADNDNAA----VG 207 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + + + + G F LA + + S LG F+ + +++ L K Sbjct: 208 AESTIRKIYTQARSGADFGGLARQYSQDSSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + + FG+ I +++++ + T + + + + KA + + L Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320 >gi|15594454|ref|NP_212242.1| basic membrane protein [Borrelia burgdorferi B31] gi|195941846|ref|ZP_03087228.1| basic membrane protein [Borrelia burgdorferi 80a] gi|216264206|ref|ZP_03436198.1| basic membrane protein [Borrelia burgdorferi 156a] gi|218249766|ref|YP_002374636.1| basic membrane protein [Borrelia burgdorferi ZS7] gi|221217448|ref|ZP_03588919.1| basic membrane protein [Borrelia burgdorferi 72a] gi|223889066|ref|ZP_03623655.1| basic membrane protein [Borrelia burgdorferi 64b] gi|224532923|ref|ZP_03673533.1| basic membrane protein [Borrelia burgdorferi WI91-23] gi|224533973|ref|ZP_03674557.1| basic membrane protein [Borrelia burgdorferi CA-11.2a] gi|225549343|ref|ZP_03770316.1| basic membrane protein [Borrelia burgdorferi 94a] gi|225549885|ref|ZP_03770847.1| basic membrane protein [Borrelia burgdorferi 118a] gi|226320700|ref|ZP_03796258.1| basic membrane protein [Borrelia burgdorferi 29805] gi|226321981|ref|ZP_03797506.1| basic membrane protein [Borrelia burgdorferi Bol26] gi|2687994|gb|AAC66497.1| basic membrane protein [Borrelia burgdorferi B31] gi|215980679|gb|EEC21486.1| basic membrane protein [Borrelia burgdorferi 156a] gi|218164954|gb|ACK75015.1| basic membrane protein [Borrelia burgdorferi ZS7] gi|221192726|gb|EEE18942.1| basic membrane protein [Borrelia burgdorferi 72a] gi|223885315|gb|EEF56416.1| basic membrane protein [Borrelia burgdorferi 64b] gi|224512122|gb|EEF82513.1| basic membrane protein [Borrelia burgdorferi WI91-23] gi|224512809|gb|EEF83176.1| basic membrane protein [Borrelia burgdorferi CA-11.2a] gi|225369576|gb|EEG99027.1| basic membrane protein [Borrelia burgdorferi 118a] gi|225370201|gb|EEG99641.1| basic membrane protein [Borrelia burgdorferi 94a] gi|226232571|gb|EEH31325.1| basic membrane protein [Borrelia burgdorferi Bol26] gi|226233916|gb|EEH32639.1| basic membrane protein [Borrelia burgdorferi 29805] gi|312148208|gb|ADQ30867.1| basic membrane protein [Borrelia burgdorferi JD1] gi|312149453|gb|ADQ29524.1| basic membrane protein [Borrelia burgdorferi N40] Length = 336 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 116/366 (31%), Gaps = 80/366 (21%) Query: 24 PFLIWGLSD--ALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 FL W + + S + ++ V + + + + F + + + + G + Sbjct: 3 SFLFWVILGTVGISSFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKTQGRDLTDA 58 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 K++L L++ Q G++ V I F + F+ + Sbjct: 59 E------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN--FTDEQIK 108 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + ++G N E + + LS +V + Sbjct: 109 QMIEKQGTNWGELLSSMKRSLSSQKLV-----------------------------LKQA 139 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 I PS + +++E K + P+ R+S+I F +K++ + Sbjct: 140 QPKFSEIKTPSEKEIVEYYEANKTKFVNPDISRVSHIFFSTKDKKRSDVLDQA------- 192 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318 KN +++ F +EA + + ++ + L +S G + + Sbjct: 193 KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFLSRGDQNAQ 237 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---------VKK 369 + +F+ KGD + I G+ I V+ + + VK Sbjct: 238 NLLGADFVKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTADLIVKD 296 Query: 370 DIANQM 375 I N M Sbjct: 297 AIRNNM 302 >gi|261380640|ref|ZP_05985213.1| putative cis-trans isomerase [Neisseria subflava NJ9703] gi|284796620|gb|EFC51967.1| putative cis-trans isomerase [Neisseria subflava NJ9703] Length = 329 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 33/356 (9%), Positives = 97/356 (27%), Gaps = 90/356 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V + + + Q + + + + L +++L +++ + Sbjct: 52 SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + IA +P + Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + +V + + + S++ + ++ E Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K I + + +Y + Sbjct: 173 QAKQQ---------------------GITLPEADPVRQYHAQHILIKADNDNAA----VG 207 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + + + + G F LA + + S LG F+ + +++ L K Sbjct: 208 AESTIRKIYSQARSGADFGGLARQYSQDGSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + + FG+ I +++++ + T + + + + KA + + L Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320 >gi|28867781|ref|NP_790400.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato str. DC3000] gi|81732691|sp|Q88A44|SURA_PSESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|28851016|gb|AAO54095.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato str. DC3000] Length = 428 Score = 94.3 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V + L ++LD L+ Sbjct: 19 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ + + + Sbjct: 74 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 129 Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V ++ S + DQ K E + I++ + A Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + I + Sbjct: 190 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 249 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291 + EK + + + V ++ + A + ++ ++ Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 309 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G +L+ L + D + S +G+ + ++G Sbjct: 310 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 367 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + + A + +R K E+++ +++ + + + ++ Sbjct: 368 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425 Query: 407 REK 409 + Sbjct: 426 AAQ 428 >gi|229091310|ref|ZP_04222528.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42] gi|228692076|gb|EEL45817.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42] Length = 149 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 6/142 (4%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLAD 327 V ++ ++K A E + + G+ F LA++ + G + P + Sbjct: 2 KVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 61 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + + L G + + ++GY I V++ K F EVK I + + + + Sbjct: 62 AAYKL-DAGQVSEPVKTTYGYHIIKVTDKKE--LKPFDEVKDSIRKDIEQQRLQDTTGKW 118 Query: 388 YKRLEEFLALGTSMDEISRREK 409 +++ L + + K Sbjct: 119 KQQVVNELLKDADIKVNDKEFK 140 Score = 37.3 bits (85), Expect = 7.9, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%) Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 K + V E G++F + K + Q + + Sbjct: 11 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 70 Query: 561 KCFPIENGLSYVVFKVTNSK-VGPVQE-KDKFISYLTQMMNKDL----LDSVIAYLKSQY 614 P++ Y + KVT+ K + P E KD + Q +D V+ L Sbjct: 71 VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 130 Query: 615 SVTVHDN 621 + V+D Sbjct: 131 DIKVNDK 137 >gi|152974625|ref|YP_001374142.1| peptidylprolyl isomerase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023377|gb|ABS21147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cytotoxicus NVH 391-98] Length = 282 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 14/165 (8%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 K E + S EK + I+++E + +Y + + ++ ++ Sbjct: 91 KQQGIKEETLKTSVRAQLAQEKAIEKSITDEEAKKKYRD--------KRVFAKHILVKDE 142 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGD 337 + A + + L +GK F LA++ + G E P D+ F + KK + Sbjct: 143 ETAKKVKEELGQGKSFEDLAKQYSEDPGSKEKGGDLGELKPGTLVKEFEDAAFKM-KKDE 201 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + SFGY I V++IK + F+E K I ++ K + Sbjct: 202 VSEPVKSSFGYHIIKVTDIKDA--KPFKEEKAAIKKEIAQQKLQD 244 >gi|255020025|ref|ZP_05292098.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus ATCC 51756] gi|254970554|gb|EET28043.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus ATCC 51756] Length = 258 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 7/157 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K+ + E+QA Y K E V ++ + EAD+ LK GKKF L Sbjct: 100 DQYIKEHPVPESEIQAAYNKFVAAMGKKEY-EVRHILVKTKAEADKILAELKAGKKFSTL 158 Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 AE+ + LG + A++I + FGY I V Sbjct: 159 AEKYSIDKASAAHGGELGWIVPGMVV-PPFAEAIEKAPIDKPV-GPVQTQFGYHIIEVQA 216 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 KP +K I Q++ +A++ V + + + Sbjct: 217 TKPLTPPPLSAMKDRIKAQLQQEEAAKFVSDLRSQAK 253 Score = 43.8 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 47/159 (29%), Gaps = 9/159 (5%) Query: 468 IKESIPARDRKLEEVLTD----VKKDWKTVKTAE----EVSSKANQLVLEYSKEGKNFRD 519 + + I E+ V K + ++A++++ E K GK F Sbjct: 99 VDQYIKEHPVPESEIQAAYNKFVAAMGKKEYEVRHILVKTKAEADKILAEL-KAGKKFST 157 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 + + + + ++ P++ Y + +V + Sbjct: 158 LAEKYSIDKASAAHGGELGWIVPGMVVPPFAEAIEKAPIDKPVGPVQTQFGYHIIEVQAT 217 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 K + + ++ ++ L+SQ + + Sbjct: 218 KPLTPPPLSAMKDRIKAQLQQEEAAKFVSDLRSQAKIDI 256 >gi|160887185|ref|ZP_02068188.1| hypothetical protein BACOVA_05201 [Bacteroides ovatus ATCC 8483] gi|156107596|gb|EDO09341.1| hypothetical protein BACOVA_05201 [Bacteroides ovatus ATCC 8483] Length = 713 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 94/722 (13%), Positives = 210/722 (29%), Gaps = 125/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L E Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + Y K K + Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I +L S +++ G VI V+N K V I ++ Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWTFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615 PI+ V +V K+ + + LT M + ++ L + + Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR-FASRLMNDLYLKAN 704 Query: 616 VT 617 V Sbjct: 705 VK 706 >gi|75758814|ref|ZP_00738928.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493718|gb|EAO56820.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 254 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 14/167 (8%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 K E + S EK + I++ +++A++E K++ ++ ++ Sbjct: 93 KQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEI------KASHILVKDE 146 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A + L +GK F +LA++ + LG F + ++ L KK Sbjct: 147 ETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVK-EFEEAAQKL-KKD 204 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + + + FGY I V++ +F + K DI + K + Sbjct: 205 EVSEPVKTQFGYHIIKVTDNHADA--TFDKSKADIKKSLAQEKTQDA 249 >gi|239780227|gb|ACS15392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium FLS12] Length = 306 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 83/250 (33%), Gaps = 19/250 (7%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 K + V G+ + + + + + + P Sbjct: 55 RKEAVQAMAKDHVVTGVLINQEVARRHMSIPPHELEAAFEAVAQQQDAKDKPPE----QG 110 Query: 216 WFEKYKDNYRAPE-YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +++ + + R+ E + +++ A YE++K+++ PE+ Sbjct: 111 GWDENQADAVKKNLEMRMKIDRLLDEVCRDVPEPTEEDVLACYEESKDRFAVPEMIHAAH 170 Query: 275 LV-------FPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSL-SDISLGSFSKEYIPD 322 +V +++ A + + KG F +LA S LG F + + Sbjct: 171 IVKHVQDGNIMDRQAAYNEMKDIANEIDKGATFEELAARHSDCPDSGGDLGVFPRGQMV- 229 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 D +F+L + G + + FG IA + +P SF EV ++ + Sbjct: 230 QEFEDVVFAL-EVGQVSGIFSSCFGLHIAKLYERRPRVDKSFDEVADEVRKACATELENT 288 Query: 383 KVKEDYKRLE 392 ++ L+ Sbjct: 289 RIDAFVDELK 298 >gi|327479275|gb|AEA82585.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri DSM 4166] Length = 435 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 60/372 (16%), Positives = 114/372 (30%), Gaps = 76/372 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ I ++ G V L +++L+ L+S Sbjct: 36 DRVVAIVDNDVIMQSQLDQRIQEVRQTIEKR-GAEVPPNEV----LQQQVLERLISENLQ 90 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + +A + N + + F LAR+G++ + + + + Sbjct: 91 LQIGERSGVRISDEELNQAMATI----AQRNNMTPEQFREALARDGLSPETAREQIRREM 146 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + V + R V S + + Sbjct: 147 IISRV----------------------RQRR-----------VAERIQVSEQEVQNFLAS 173 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + E ++ IL V E I E Sbjct: 174 DLGKLQLSEEYHLANILIPVPEAADSATIQAAE--------------------------- 206 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A + + L+KG F +LA + +L +G +P + LA G Sbjct: 207 -RMARDTHEQLQKGADFARLAVARSASENALEGGDMGWRKAAQLP-PPFDSLVRELA-VG 263 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFL 395 +FT + G++I V + T EV I + ++ ++ + KRL E + Sbjct: 264 EFTEPVRTPPGFIIVKVLEKRGGETQVRDEVHVRHILIKPSAIRSEDEARLLVKRLRERI 323 Query: 396 ALGTSMDEISRR 407 G E++R Sbjct: 324 LAGEDFAELARN 335 >gi|94984847|ref|YP_604211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus geothermalis DSM 11300] gi|94555128|gb|ABF45042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus geothermalis DSM 11300] Length = 345 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 48/358 (13%), Positives = 92/358 (25%), Gaps = 89/358 (24%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99 + V VG + + F +++Q + + G + L + Sbjct: 57 TVVAQVGNETYTLADFDRAFRQAVARVLNAQGVPYTPDLLAEFAEARPDFLTQFARDRAV 116 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKM 158 Q + + ++A FS D F L G E + Sbjct: 117 YQLARRTT-QVKPADIDAQVAE------ARKGFSSDADFQQALQASGY---ENEAEFRAD 166 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L R VV ++ + + +A++ ++ Sbjct: 167 LERQAVVQAYLDSI------------------------------KSRLTFGDALVQSFYN 196 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + P V+ ++ Sbjct: 197 LNRAAFNRPAQA----------------------------------------CVKHILVK 216 Query: 279 NQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 Q EA + L+ G F QLA ++ G + LG S + FS Sbjct: 217 TQAEAQGVLRDLQGGADFAQLAQQKSQDPGSAADGGDLGCLSPGETV-AAFDKVAFSAPL 275 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 V+ +G+ + V+ + EV I Q+ A + + RL Sbjct: 276 NQP--QVVQTEYGWHVLVVTKRSEAGVPPLSEVAPLIREQLARDAAQKYLDAQIARLN 331 >gi|239616790|ref|YP_002940112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia TBF 19.5.1] gi|239505621|gb|ACR79108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia TBF 19.5.1] Length = 673 Score = 94.3 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 72/597 (12%), Positives = 181/597 (30%), Gaps = 134/597 (22%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---------------TVVSVGR 48 +RK + + ++ + W ++ + S + ++ Sbjct: 6 WMRK-IQVPIIWTIAILFAAGVIWWSVATYMSGKSRETGSTTPTNSARPEDAFAYLTKDG 64 Query: 49 QK-------VPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-----DKKILDNLVSG 96 + +S + ++ + L +SQ+ ++ S G+ +L +L+ Sbjct: 65 TPLEDPIYWISYSEYDDTVRDVLSSLSQR-NIQLDPYFKGSAGMSEIDVRYMVLLDLIDQ 123 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L + + + + + S + + +++ + + + + + Sbjct: 124 KILIYYAKKHNIYPTEDEINTRVEEI-----VSKYTSDENYKAQIEQYYGSVEAFKEKVR 178 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 K + + + + + L + Sbjct: 179 KSIFPSVLKEKVQNDVL---------------------------------KDVDQKLKTY 205 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 FE+ K DE++ +Y E ++ Sbjct: 206 FEENK-----------------------------DEIKNKY----------ERVEASHIL 226 Query: 277 FPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331 ++ A E L G F A E + SLGSF + D+ FS Sbjct: 227 LTSEASALELKNELLNGAINFSDAASEFSIDRNSAVLGGSLGSFGHGQMVK-EFEDAAFS 285 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKR 390 A G+ + +G+ + V+ + +F E+K A +Q + S++ K+ ++ Sbjct: 286 -ATPGEIVGPVETKYGFHLIKVA--TKTVFDTFDELKSSSAYDQFKNDYESDEFKKWFEN 342 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + G +++ KI + + + D K+++ + E V G P+ Sbjct: 343 YKNNEKFGYVIND--EELKIYNEFKKVQNAGNTDEYLKKLSTTIFNESGGISVEGSYLPI 400 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS--------- 501 + ++ + + ++ + +KL E + +++S Sbjct: 401 AIFVQLSDEKLNNLKYELNDLKE--MKKLSETTPATILSLSNEEIEKKLSELNDSTDTKL 458 Query: 502 -----KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 A +L SK G++ + + L +++N F Y+ + F Sbjct: 459 KDLYSDAKKLKEYQSKYGEDINSVNELLETKQKEFDELNSRFATAVKFLYNMMPYSF 515 >gi|292492134|ref|YP_003527573.1| SurA domain protein [Nitrosococcus halophilus Nc4] gi|291580729|gb|ADE15186.1| SurA domain protein [Nitrosococcus halophilus Nc4] Length = 425 Score = 93.9 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 59/435 (13%), Positives = 135/435 (31%), Gaps = 65/435 (14%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 ++ V + W + + V V + V S + K G + + Sbjct: 5 LVAVLAVFWSMGS-FGATILDRIVAVVNEEVVLESELEQMVHTVQEQLVAK-GTPLPPDY 62 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L++++L+ LV Q G+ + + R +DN + F Sbjct: 63 M----LEQQVLERLVMQQLQLQLAARTGIRVGDETLNQALRRI----AEDNGLTLSQFRD 114 Query: 140 RLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFEN--RSVDYIV 196 L ++G N + ++ + L + + + S +D + + V Y Sbjct: 115 VLEQDGYNFPSFRENIRRELIISQLHKREVNDRVTVSEAEIDNFLTTQRKRGNQDVQY-Q 173 Query: 197 LNNRHVPAIADPSNAVLTQW----------------FEKYKDNYRAPEYK---------- 230 L + + S L F+K Y + Sbjct: 174 LGHVLIAVPEAASPEQLQAARAKGEQLLRQLREGMDFQKAALAYSDGQQALEGGNLGWRK 233 Query: 231 --RISYILFDVHEKEKKIEISNDE-------LQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 ++ + DV K + EIS + ++ E+ ++ + Sbjct: 234 MGQLPTLFVDVVPKLQVGEISELIRSPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDE 293 Query: 282 EADEAFQSLK---------KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADS 328 L+ +G F +LA+ ++ +L LG S + + Sbjct: 294 LTSNRDARLRLGQLRQRALQGDDFSELAQAHSDDKASALKGGDLGWISPGQMI-PRFEEV 352 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + SL G+ + FG+ + + N + ++ + + ++R K E+++ Sbjct: 353 MRSL-DPGEISKPFQTQFGWHVVQILNRR-QQNMTEEFNRNRARMEIRQRKIEEELENWL 410 Query: 389 KRLEEFLALGTSMDE 403 ++L + + +D Sbjct: 411 RQLRDEAYVEYRLDS 425 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 40/371 (10%), Positives = 110/371 (29%), Gaps = 35/371 (9%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + V+ V L R E + + + ++ + + + Sbjct: 63 MLEQQVLERLVMQQLQLQLAARTGIRVGDETLNQALRRIAEDNGLTLSQFRDVLEQDGY- 121 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++R + + E ++ +S E+ +++ + ++ Sbjct: 122 -NFPSFRENIRRELIISQLHKREVNDRVTVSEAEIDNFLTTQRKRGNQDVQYQLGHVLIA 180 Query: 279 NQKEA------------DEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV 323 + A ++ + L++G F + A ++L +LG +P Sbjct: 181 VPEAASPEQLQAARAKGEQLLRQLREGMDFQKAALAYSDGQQALEGGNLGWRKMGQLP-T 239 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD----IANQMRITK 379 D + L + G+ + +I G+ I + + + + +++ + Sbjct: 240 LFVDVVPKL-QVGEISELIRSPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDELTSNR 298 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + +L + G E+++ G G+ + P E++ Sbjct: 299 DARL---RLGQLRQRALQGDDFSELAQAHSDDKASALKGGDLGWISPGQMI---PRFEEV 352 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + DP G ++ + + + + + K EE+ Sbjct: 353 MRSL----DPGEISKPFQTQFGWHVVQILNRRQQNMTEEFN--RNRARMEIRQRKIEEEL 406 Query: 500 SSKANQLVLEY 510 + QL E Sbjct: 407 ENWLRQLRDEA 417 >gi|322437244|ref|YP_004219456.1| SurA domain protein [Acidobacterium sp. MP5ACTX9] gi|321164971|gb|ADW70676.1| SurA domain protein [Acidobacterium sp. MP5ACTX9] Length = 377 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 51/372 (13%), Positives = 113/372 (30%), Gaps = 83/372 (22%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + +V + + + +LG Q ++E+A S L +L L+ Sbjct: 54 SADVMATVNGHAIMRADLDKVYNLQLGEAQQ---SQPSAEQADSQRL--GLLKQLIDEEI 108 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + L A + V ++A ++ + F L + + + Sbjct: 109 VQQRATKMNLTATNEEVDAKLAEMKA------PYTEEQFDGLLRERHTSVDDIKRDLRRS 162 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L+ ++ + + + S+A +T +F Sbjct: 163 LTMNKLLN---------------------------------KEINSKVTVSDADITSYFN 189 Query: 219 KYKDNYRAPE-YKRISYILF--DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++K + E I+ IL + ++ S + A Sbjct: 190 QHKSEFNNIETQYHIARILVTSSPAPQAGNLQGSKAQTDA-------------------- 229 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 +K+ + G+ F LA E+ S S +GS ++ + + + + Sbjct: 230 --DAKKKILALKNRVDSGEDFGSLAMNFSEDPQTSASGGDMGSVAETQMKSNPIIFNSLA 287 Query: 332 LAKKGDFTP----VIHGS----FGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKAS 381 K G T GY I + + P+ E V++ I + ++ Sbjct: 288 NLKPGQVTDIMPFPDPSDPKKVGGYAIFQLLSRDPAGQHDVSEPQVQQRIRQGLHDARSQ 347 Query: 382 EKVKEDYKRLEE 393 Y+ L + Sbjct: 348 LLKGAYYEMLRD 359 >gi|325981462|ref|YP_004293864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] gi|325530981|gb|ADZ25702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp. AL212] Length = 264 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 77/166 (46%), Gaps = 4/166 (2%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ + + K ++S+D L+ EY+ + + E + ++ N+ EA + S Sbjct: 98 RQAVLVRAFQADYIKHNQVSDDTLRKEYDVLRVQMGDKEYK-ARHILVENENEARDIIAS 156 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LKKG F ++AEE+ G +S ++++ L+K G + SF Sbjct: 157 LKKGGNFAKIAEEKSIDDGSKENGGELNWSPPAAYVRPFSEALVKLSKGGMTEQPVQTSF 216 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + + +I+P F+EVK++I ++ + + V++ + + Sbjct: 217 GWHVIQLMDIRPMEVPPFEEVKQNIQQRVLQREFATVVQDLRSKAK 262 Score = 41.9 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 11/91 (12%) Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86 +WGL S V V +P S K + Q + Sbjct: 14 VWGLIAFSVQAQSSGVVAKVNGVAIPQSRLELMVKANVAQGQQ-----------DGPEMR 62 Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 K + +NL++ L Q L+ D + Sbjct: 63 KALRENLIAEEILAQEATKKRLDQDPEVIAQ 93 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 47/131 (35%), Gaps = 2/131 (1%) Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546 K++K E ++A ++ K G NF I + + ++ + + Sbjct: 135 KEYKARHILVENENEARDIIASLKKGG-NFAKIAEEKSIDDGSKENGGELNWSPPAAYVR 193 Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 + + P++ + V ++ + + V ++ + Q + + +V Sbjct: 194 PFSEALVKLSKGGMTEQPVQTSFGWHVIQLMDIRPMEVPPFEEVKQNIQQRVLQREFATV 253 Query: 607 IAYLKSQYSVT 617 + L+S+ V Sbjct: 254 VQDLRSKAKVE 264 >gi|331086426|ref|ZP_08335506.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406192|gb|EGG85715.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 246 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 6/162 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK- 295 + E K + ++++E+ A YE+NK+++ E + + ++ ++++ +S+ G+K Sbjct: 83 LAMRETLKDVTVTDEEVAAYYEENKQQFTKGETVSAKHILVDSEEKCTSVLESITSGEKA 142 Query: 296 FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F A+E S LG F K + + A+ G + FGY + Sbjct: 143 FEDAAKEASTCPSGARGGDLGEFGKGQMVKEFEEAA--FAAEIGHVVGPVKTQFGYHLIK 200 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 V + F EVK+ I + K + + L+E Sbjct: 201 VEKKNEASVAVFDEVKEAIKRNLIQQKQNAAYNAKVQELKEK 242 >gi|325981517|ref|YP_004293919.1| SurA domain [Nitrosomonas sp. AL212] gi|325531036|gb|ADZ25757.1| SurA domain [Nitrosomonas sp. AL212] Length = 441 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 49/414 (11%), Positives = 130/414 (31%), Gaps = 63/414 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V + + K + + Q+ G + L++++L+++++ Sbjct: 37 NHIVAVVNEDVITRHELDEAIKTAISRMQQQ-GMQIPDRHI----LEEQVLESVITKRIQ 91 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-M 158 Q +++GL + I R +DN+ + F + L +GI+ ++ + + M Sbjct: 92 IQHAQEVGLSVAETELDETINRI----AEDNQLTLPEFHTVLENDGISYNKFREEIREEM 147 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYF-------ENRSVDYIVLNNRHVPAIADPSNA 211 + + + +D + E R ++L ++ A A Sbjct: 148 IIARLKEREVKHQVNVTEGEVDNFLQTQEASAVGDDEYRLAHIMILVPENMTADQIQQRA 207 Query: 212 VLTQW----------FEKYKDNY-------------------RAPEYKRISYILFDVHEK 242 + F + + P + +I L Sbjct: 208 ERAEMALTRLREGAEFSQIVSEFSDAADAKNGGIIEWRPISQMGPAFAQILEALQPGDIT 267 Query: 243 EKKIEISNDELQAEYEKNKEKYFSP--EIRTVEQLVFPNQK---------EADEAFQSLK 291 + + + ++ + + ++ + + L Sbjct: 268 SIVQSPNGFHIFKLLGRRAQETPTVIIDQTHARHILIKINELTSENDGKLKILALKDRLD 327 Query: 292 KGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 +G+ F ++A E + S LG S + +L G+ + + FG+ Sbjct: 328 RGESFEEVARLYSEDASASSGGDLGWLSPGDTV-PDFERVMNALL-PGEISDPVRSQFGW 385 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + V + + +S ++ +R KA +++ ++L + + +D Sbjct: 386 HLIQVMERR-TQDISLDRRRQTARQAIRTRKADVVIQDWLQQLRDQAYIEYRLD 438 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 71/202 (35%), Gaps = 18/202 (8%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277 + +R + + E + ++ ++ E+ + + + + ++ Sbjct: 137 NKFREEIREEMIIARLKEREVKHQVNVTEGEVDNFLQTQEASAVGDDEYRLAHIMILVPE 196 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLAD 327 + A+ A L++G +F Q+ E + + G I + A Sbjct: 197 NMTADQIQQRAERAEMALTRLREGAEFSQIVSEFSDAADAKNGGIIEWRPISQMGPAFAQ 256 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVKKD-IANQMRITKASEKV 384 + +L + GD T ++ G+ I + + T + + I ++ + Sbjct: 257 ILEAL-QPGDITSIVQSPNGFHIFKLLGRRAQETPTVIIDQTHARHILIKINELTSENDG 315 Query: 385 KEDYKRLEEFLALGTSMDEISR 406 K L++ L G S +E++R Sbjct: 316 KLKILALKDRLDRGESFEEVAR 337 >gi|320334162|ref|YP_004170873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus maricopensis DSM 21211] gi|319755451|gb|ADV67208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus maricopensis DSM 21211] Length = 331 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 40/357 (11%), Positives = 95/357 (26%), Gaps = 86/357 (24%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99 + V +G Q + + F ++++Q + + G ++++ +IL+ + + Sbjct: 41 TVVARIGTQTLTLADFESAYRQAVAQVVNAQGVPLSADVLPYFVQYRPEILEQVARQRAV 100 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + GL+ D +V I D + Sbjct: 101 LQLAANSGLKVDTAKVDQSI--------------------------------EDLRKEYP 128 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + D G S L Q+ + S++V+ ++ Sbjct: 129 ADADYTDALEGSGYVSEAALRQSIA------DAQLYRAYLDTIRGKFKFSDSVVNGYYLS 182 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K ++ P + ++ + Sbjct: 183 HKADFTRP----------------------------------------AEACAKHILLKD 202 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKK 335 A L KG+ F ++A E + LG + ++F Sbjct: 203 DATARTVAARLSKGEDFAKVAAEVSEDPGSKGQGGDLGCLAPGDTV-PEFDAAVFKGPLN 261 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + FG + V+ + E I + + A + + +++ Sbjct: 262 --TVQTVKTQFGTHLVVVTKRTDAGLAPLAEAADQIRDTLANEAAQKYINAQLVKVK 316 Score = 41.5 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 22/265 (8%) Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 F + + +I Q+ +A ++ + + + S++++ + + ++ +G Sbjct: 83 FVQYRPEILEQVARQRAVLQLAANSGLKVDTAKVDQSIEDLRKEYPADADYTDALEGSGY 142 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 + +I + L+R + + ++ +G Y+ + + PA Sbjct: 143 VSEAALRQSIADAQ--LYRAYLDTIRGKFKFSDSVVNGYYLSHKADFTRPA--------- 191 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENK 542 + K + ++ +++ V +G++F + + + Q + Sbjct: 192 ---EACAKHILLKDDATAR---TVAARLSKGEDFAKVAAEVSEDPGSKGQGGDLGCLAPG 245 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQEKDKFISYLTQMMNKD 601 + + VF GP+ V+ + G VV K T++ + P+ E + + + Sbjct: 246 DTVPEFDAAVFKGPLNTVQTVKTQFGTHLVVVTKRTDAGLAPLAEA---ADQIRDTLANE 302 Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRY 626 I + V V +L+ Sbjct: 303 AAQKYINAQLVKVKVEVFKDLVTEA 327 >gi|307826208|ref|ZP_07656418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter tundripaludum SV96] gi|307732742|gb|EFO03609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter tundripaludum SV96] Length = 343 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 K+ D+ K +++ E++AEY+ E + ++ + EA + Sbjct: 112 KKALLTQADLQNFIKANPVTDAEIKAEYDSKVAAEKGTEYK-ARHILVKTETEAKKLITE 170 Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 L KG F +LA + + LG FS + ++++ +L K + Sbjct: 171 LDKGADFAKLANKNSLDAKESQNGGDLGWFSAAQMV-APFSEAVAALEKGKYTKEPVKTQ 229 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ + + +P + VK+ + ++ K E ++ K+ + Sbjct: 230 FGFHVILKEDSRPVTPPPLEAVKEQLTPFLQRKKVQEMIETLRKQAK 276 >gi|218779881|ref|YP_002431199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] gi|218761265|gb|ACL03731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum alkenivorans AK-01] Length = 327 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 17/163 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQSLKKG-K 294 + E Q Y++N + P V ++ + A + +KKG + Sbjct: 154 TPTEAEAQKYYDENPNDFVLPRALRVRHILIKKDAAKGVDGKTAKARAQQILARVKKGGE 213 Query: 295 KFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFGYV 349 F +A E +G S+ + + L + + + G+ + G+ Sbjct: 214 PFAIIAREASDGPEKDQGGDMGYVSEGALKNTELEPLEKVILKLQPGEIGNPVETDIGFH 273 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 I + +P F+ VK+ + + ++ K E + + L+ Sbjct: 274 IVKALDERPESITPFETVKERLISALQKKKMVEALNQLASELK 316 >gi|89100502|ref|ZP_01173363.1| YacD [Bacillus sp. NRRL B-14911] gi|89084768|gb|EAR63908.1| YacD [Bacillus sp. NRRL B-14911] Length = 296 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 80/202 (39%), Gaps = 15/202 (7%) Query: 192 VDYIVLNNRHVPAIADPSNAVL-------TQWFEKY--KDNYRAPEYKRISYILFDVHEK 242 +D V+ + S + ++ + + ++I Y L Sbjct: 69 IDQKVIGAMAEKYDVEVSKDAVERELTLVKTMYQGNRLQQLDESKWKEQIKYSLLLEELL 128 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 + + ++ +E++ Y++NK + P+ + Q+V +KEA++ + L+ G F LA E Sbjct: 129 TRDVVVTEEEMKDYYDQNKSLFQVPDSYHISQIVVKTKKEAEQTIKELENGSSFPVLAME 188 Query: 303 QGKSLSDISLGSFS-----KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + G + ++ D L K+G+++ + GY + + Sbjct: 189 RSIDEFTANQGGETGFISEEDERFSQDFIDEAAKL-KEGEWSEPVEVEDGYAVILLHEHL 247 Query: 358 PSFTVSFQEVKKDIANQMRITK 379 +F++VK I Q+ + + Sbjct: 248 DGRNYAFKDVKNQIRRQVALEQ 269 >gi|206603171|gb|EDZ39651.1| Protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 234 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 28/233 (12%) Query: 1 MLEIIRKAS----RTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54 MLE IRK + + + L + V WG S G V + + + Sbjct: 1 MLEWIRKVAVERPKVLGTLMILVGAIFVVSMGWWGFSAYKSGKPG--IVARINGTPLYAT 58 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 F ++ + + + + + +L N++ + L Sbjct: 59 EFSRDYEIMKNNYQRLLNGALGKKILTELNFPGLVLRNMIFRQLWIDEANHLHLVVPDAV 118 Query: 115 VWGEIARSPLFHGKDNK-FSHDVFVSRLAREGINEKEYIDHYTKMLSRTD---VVGMFVG 170 V E++R P F + FS ++ L + K++ + L +V Sbjct: 119 VVSEVSRIPFFQEGNPPAFSSKLYTQFLLETHQSAKDFEQSIREDLLVQRAQVLVRAIQT 178 Query: 171 GMRPSN----------------LLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 P++ L + + F + + + ++ ++ Sbjct: 179 PAAPTDEKTATSLDDWQKKRLALQEETLQSFQMQLENRSNVKIDQEAFKKLSK 231 >gi|122070665|sp|Q9I5U3|SURA_PSEAE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 417 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + ++ G + E L +++L+ L+ Sbjct: 18 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 72 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S + F + L R+G++ + + + + Sbjct: 73 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQTALTRDGLSYADAREQVRREM 128 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ S + + E R + ++ + + + Sbjct: 129 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 188 Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + Sbjct: 189 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 248 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ +K A + ++ ++ G Sbjct: 249 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 308 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L E + + + +G+ + FG+ Sbjct: 309 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 366 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + F+E + + +R K E+++ +++ + Sbjct: 367 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 412 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167 RV + + + ++ +V + L R + + + L ++ Sbjct: 15 VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 74 Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G+R S+ L+QA + + ++A R Sbjct: 75 IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQTALTRDGLSYADA-------------R 121 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282 + + ++I++S E++ + K E + ++ P + Sbjct: 122 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 181 Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 A E +Q LK+G F QLA + +L +G +P I Sbjct: 182 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 240 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382 SLA GD T + G++I + + + EV +I ++ K ++ Sbjct: 241 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 299 Query: 383 KVKEDYKRLEEFLALGTSMDE 403 K+ E + E+F L S E Sbjct: 300 KLYERIQSGEDFGELAKSFSE 320 >gi|254451174|ref|ZP_05064611.1| foldase protein PrsA [Octadecabacter antarcticus 238] gi|198265580|gb|EDY89850.1| foldase protein PrsA [Octadecabacter antarcticus 238] Length = 284 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 5/151 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + +LQA Y+ ++ ++EA E + G F + A E+ Sbjct: 114 SAPVDEADLQATYDARFADIVPEAEYNASHILVETEEEAIEIGTMIDDGADFAETAVEKS 173 Query: 305 ---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 S LG F + + +++ +L G+ + + FG+ I ++ + + Sbjct: 174 TGPSGPSGGDLGWFGLGMMV-PAFEEAVLTL-DAGEVSAPVQTQFGWHIVKLNETRETPL 231 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ ++ ++ + + + Sbjct: 232 PTLDGLRVELTTGIQQQGLDALITTLTETAD 262 >gi|310817118|ref|YP_003965082.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25] gi|308755853|gb|ADO43782.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25] Length = 297 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 8/166 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ LQA Y++ + + ++ Q+EAD L G+ F +A+E Sbjct: 123 AVTDETLQAAYDRAFDGVTPGNEYSAAHILVATQEEADAVIARLNAGEDFATVAQELSLD 182 Query: 307 ----LSDISLGSFSKEYIPDVSLADSIFSLAKKGD---FTPVIHGSFGYVIAHVSNIKPS 359 + LG F+ E + + A+++ L + G + I FG+ I V +P Sbjct: 183 TGSGAAGGELGWFAPEMMVEP-FANAVVELGEAGQFDTLSAPIESQFGFHIITVHEARPQ 241 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + E++ ++ Q+R +E + E T+ D + Sbjct: 242 SLPTIAEIRTELEGQVRQDTLTEILNGLEAESEVSRTDLTTFDPTA 287 >gi|225552054|ref|ZP_03772994.1| basic membrane protein [Borrelia sp. SV1] gi|225371052|gb|EEH00482.1| basic membrane protein [Borrelia sp. SV1] Length = 336 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 116/366 (31%), Gaps = 80/366 (21%) Query: 24 PFLIWGLSD--ALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 FL W + + S + ++ V + + + + F + + + + G + Sbjct: 3 SFLFWVILGTVGISSFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKTQGRDLTDA 58 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 K++L L++ Q G++ V I F + F+ + Sbjct: 59 E------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN--FTDEQIK 108 Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + ++G N E + + LS +V + Sbjct: 109 QMIEKQGTNWGELLSSMKRSLSSQKLV-----------------------------LKQA 139 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 I PS + +++E K + P+ R+S+I F +K++ + Sbjct: 140 QPKFSEIKTPSEKEIIEYYEANKTKFVNPDISRVSHIFFSTKDKKRSDVLDQA------- 192 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318 KN +++ F +EA + + ++ + L +S G + + Sbjct: 193 KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFLSRGDQNAQ 237 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---------VKK 369 + +F+ KGD + I G+ I V+ + + VK Sbjct: 238 NLLGADFVKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTADLIVKD 296 Query: 370 DIANQM 375 I N M Sbjct: 297 AIRNNM 302 >gi|42521667|ref|NP_967047.1| parvulin-like peptidyl-prolyl isomerase [Bdellovibrio bacteriovorus HD100] gi|39574197|emb|CAE77701.1| Parvulin-like peptidyl-prolyl isomerase [Bdellovibrio bacteriovorus HD100] Length = 322 Score = 93.9 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 10/172 (5%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +R + EK + +E++ YE NK++Y E + Q+V Sbjct: 132 SEWREELRYSLVEREVFKKINEKVKAPTEEEIKRYYEDNKDRYKRKERVFLRQIVVDEDA 191 Query: 282 EADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 +AD LK G F +LA + ++ +G K + D +F G Sbjct: 192 KADAIKVDLKTG-DFAELARKYSITPEAKQGGVVGWIEKGTV---DYFDPLF---NVGSG 244 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 I FG + V P+ T+S +EVK I +R + + Sbjct: 245 VQTIKSPFGIHLIRVEKKAPASTLSLEEVKPQIIRALRAQREQAEYVAWLDA 296 >gi|302185941|ref|ZP_07262614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv. syringae 642] Length = 440 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 49/423 (11%), Positives = 133/423 (31%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-M 158 Q E G+ + I + N S + F + LA +G++ + + + M Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW- 216 + ++ S + + + + L N + S+ + Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSEAIQAAA 201 Query: 217 ------FEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 +++ K ++ ++ + + + + + + Sbjct: 202 AKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVGDVT 261 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQSLK 291 + EK + + + V ++ ++ A + + ++ Sbjct: 262 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEAETKRLAQKIYDRIE 321 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F +LA+ + G +L+ L + + S +G+ + +G Sbjct: 322 NGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGELSKPFQTQYG 379 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + ++ A N +R K E+++ +++ + + + ++ Sbjct: 380 WHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 437 Query: 407 REK 409 + Sbjct: 438 AAQ 440 >gi|254251452|ref|ZP_04944770.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] gi|124894061|gb|EAY67941.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] Length = 454 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 50/410 (12%), Positives = 124/410 (30%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 42 DEVVAVVNNDVITGRELDQRVSLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + +RL +G+ + + L Sbjct: 97 VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRARLEAQGVPWNIFTNDARTEL 152 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205 + + V + S+ + + + + + + + A Sbjct: 153 MLSKLREREVDSKITVSDAEVANYIASQRGPNAAQQQDLRFQHIFIKAPTNAPQTEIEAA 212 Query: 206 ADPSNAVLTQWF-------------EKYKDN------YRA-----PEYKRISYILFDVHE 241 + A+L Q E +++ P+ + + L Sbjct: 213 QKKAEALLQQAMSGADFEKLARNNSEANDAKKGGDLGFKSPGALPPDVVQAASKLRPGQV 272 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + V ++ ++E + Sbjct: 273 NPTLIRVPDGFEIVRLVDRRPSQGATAAAPKIVQTHVRHILIRVGEGKSEGQARQELLDI 332 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ SL + G + + Sbjct: 333 RKQIEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQISQPVR 390 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + + S Q+ + KA + + + L + Sbjct: 391 TEYGYHLIQVLDRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439 >gi|254883229|ref|ZP_05255939.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA] gi|319642604|ref|ZP_07997250.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A] gi|254836022|gb|EET16331.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA] gi|317385692|gb|EFV66625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A] Length = 710 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 95/720 (13%), Positives = 206/720 (28%), Gaps = 124/720 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + + + + F+ L G V V + + + Sbjct: 4 LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61 Query: 62 QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119 + +I G +N ++ + ++ + V+ + +GL V I Sbjct: 62 EYTEVIKLTQGVSALNDDQLTQ--VKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIE 119 Query: 120 -------ARSPLFHGKDNKFSHDVFVSR------LAREGINEKEYIDHYT---------- 156 ++P + + F D+ L + +Y+++Y Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKM-PAQYVEYYQKMGAFWNFIE 178 Query: 157 ----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-------- 204 + + + + + + A E V + + Sbjct: 179 KTLIQSTLAEKYQNLIAKSLISNPVAAEDAFTSRTEQSDVLLAAIPYSSISDSTITVSNS 238 Query: 205 ---------------------------IADPSNA-------VLTQWFE-----KYKDNYR 225 + PS +T++ + + Sbjct: 239 EIKDLYNKKKSSFEQPVETRNIKYIDVLVTPSEEDRKEVLNEVTEYANQLGTAADMNTFI 298 Query: 226 APE-------YKRISYILFDVHEKEKKIEISNDELQA-EYEKNKEKY---------FSPE 268 I+ ++ + ++ +E+ Y + + Y +P+ Sbjct: 299 RSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYYNQADDSYNAFKIIAKQTAPD 358 Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321 Q+ + A D F +LK G F +A++ G++ L + + + Sbjct: 359 SIQYRQIQVYAEDAAKTATLADSIFNALKDGADFADIAKKYGQTGEATWLTARNYEGAAL 418 Query: 322 DVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 D A I +L + + + + G VI V + K V I + +K Sbjct: 419 DADNAKYINTLINSNVKELSNLQIGQAN-VILQVLDKKAMKDKYKVAV---IKRPVEFSK 474 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 E + Y +F+A T+MD+I + L ++ A V + + Sbjct: 475 --ETYNKAYNDFSQFVAQNTTMDKIVANAEESGYRL--LERADFRSAEHRVGGVKGTREA 530 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 L +F + + M V +++ PA R + V +K + K AE++ Sbjct: 531 LKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDKKAEKL 590 Query: 500 SS--KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 + K + + D K+ + ++ G I Sbjct: 591 IAEMKGANSIDQVKNMANAVSDSVKH--ITFSAPAYVSVTRASEPALGAYAIKA-----E 643 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 PI+ + +V N + + K M S I L + V Sbjct: 644 VNKLTGPIKGNAGVYMIQVYNKEKSAEEFDAKNEENNLSNMAGRYASSFINDLYKKAEVK 703 >gi|254447632|ref|ZP_05061098.1| chaperone SurA [gamma proteobacterium HTCC5015] gi|198262975|gb|EDY87254.1| chaperone SurA [gamma proteobacterium HTCC5015] Length = 442 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 70/494 (14%), Positives = 156/494 (31%), Gaps = 94/494 (19%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + + +L + FL + V + ++ + I G Sbjct: 1 MMTMIARLLILFFLFATPLAQAEPQVLARIAAVVDTDIILEQEMLDELSRVKARIQAS-G 59 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +++L++L+ Q + +G+ D + ++ R +N Sbjct: 60 QTPPPDEI----LKRQVLEHLIVKEVQMQAADRVGINVDDTFLNEQLQRIAS----ENGM 111 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 S F +++ EG++ EY + + + + R+V Sbjct: 112 SLAQFKAKIESEGMDYVEYREMLREEMKIQQLR-----------------------QRTV 148 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 S + + + + EY+ ++ Sbjct: 149 Y----------DRVVVSEQEVDDYLAQNPVGSESVEYQLGHILVGTPEA----------- 187 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309 +PE +KEAD ++ +K+G +F QLA +L Sbjct: 188 ------------ATPEQVD------TARKEADNLYEQIKQGARFSQLALSHSDGQRALDG 229 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG + +P + ++I SL +KG + I G+ + + ++ Q+V+ Sbjct: 230 GDLGWLPQGRVPSL-FLEAIESL-QKGQVSRPIRSPSGFHLVQLKGVRGDERRVIQQVRA 287 Query: 370 DIA-----NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 + +A +K+ E +R+ + S E+++ I G Sbjct: 288 RHILLTPNAVLSDEQARQKIAELRRRI---VEADESFAELAKAHSIDG----SAAQGGDL 340 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484 +P Q++ + PL+ D + V++ E D E Sbjct: 341 GWAAPREYVPAFRQVVETL-----PLNTLSEPFRSDFGWHIVEVLERR-QYDETDEYRRG 394 Query: 485 DVKKDWKTVKTAEE 498 +++ + +K +EE Sbjct: 395 MARQELRKMKASEE 408 >gi|253699826|ref|YP_003021015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] gi|251774676|gb|ACT17257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21] Length = 325 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 113/368 (30%), Gaps = 78/368 (21%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 +G V + + + + ++ L + ++ + + V D+ LD V+ Sbjct: 33 NGLQIAARVNDRPIYYHQIKANVERTLAKYKRFGASKISDDVKKQVQKDE--LDRQVNME 90 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 L Q E + E D + + G D ++ + Sbjct: 91 LLVQAGEKLK-ETDLEKKMEALLNM---KGPDGSPRVKK-----------DESREKEMRE 135 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 L R + Y R + + + L +++ Sbjct: 136 QLRRNLLAES------------------YLVLRGIQDVRVP-----------EEELKRFY 166 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + + PE ++S+I+ V +K E++ + + Sbjct: 167 KDNSAKFAVPEAVKVSHIMIAVDKKATPQEVAKANAK---------------------IV 205 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 ++E L+ K F +LA+E + LG + +++P + F L K Sbjct: 206 KVREE------LLQGKKSFEELAKEHSSGDSAAKGGDLGYINPQFMP-PEFDKAAFQL-K 257 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + V+ FG+ + + KP F EVK + + K E L Sbjct: 258 SGEVSDVVKTKFGFHLIKAFDKKPGRIQEFSEVKVLLEKFLLNQYQERKRAEIAMELRRD 317 Query: 395 LALGTSMD 402 + S+ Sbjct: 318 ARIEVSLK 325 >gi|93278583|pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 ++ ++K A+E + LKKG+KF LA+E S LG F+KE D + Sbjct: 4 KIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETF 63 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + F L K G+ + + +GY I + Sbjct: 64 SKAAFKL-KTGEVSDPVKTQYGYHIIKKTE 92 >gi|303256196|ref|ZP_07342212.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium 1_1_47] gi|331001252|ref|ZP_08324878.1| SurA protein [Parasutterella excrementihominis YIT 11859] gi|302860925|gb|EFL84000.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium 1_1_47] gi|329568979|gb|EGG50775.1| SurA protein [Parasutterella excrementihominis YIT 11859] Length = 453 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 52/411 (12%), Positives = 116/411 (28%), Gaps = 79/411 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + Q + ++ N L + LD ++ + Sbjct: 48 DRIAAVVNHDVITEIQLQQRIHQVATNLRRR-----NIPLPPMDNLRDQTLDRMILERII 102 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q D G+ D + G I + +N + +LA +GI+ + L Sbjct: 103 EQKARDTGIRIDDNMLNGAIEQI----ATNNGLTVPQLEKKLAADGISVPSFKSEIRSEL 158 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA----------------------------KRFYFENR 190 + ++ +DQ R Sbjct: 159 LTQRLRERDVDDKIQIPESEIDQYLKDQSGPGKRMEYRLSRIVISFPENPTKAEVEAAQR 218 Query: 191 SVDYIV------LNNRHVPAIADPSNAVLT-----------------QWFEKYKDNYRAP 227 + + + + A + + Q + +K P Sbjct: 219 TASRALEQAQRGADFSQLAAKYSVTPEAMEGGVMGWVPAGKLPPFVVQALQNHKAGDIIP 278 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKN---KEKYFSPEIRTVEQLVFPNQKEAD 284 S+ + + E + ++ + ++ + +PE +++L + Sbjct: 279 LQAGNSFQILKLTGVRDPGEQAQQGVRQTHVRHIMMRPSNVTPEKVVIQRL--------N 330 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 E L KG F LA S LG +P + + L+ G+ + Sbjct: 331 EIKSRLDKGDGDFQTLARLHSADPSGTRGGDLGWLYPGDVP-PEMEQQLDKLS-VGEISE 388 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I +G+ I V + + ++ + ++ +R K + V + +RL Sbjct: 389 PIRTPYGWHIFQVLDRRTKSGIN-ERQREQAREALREQKLGDAVLDWERRL 438 >gi|229073881|ref|ZP_04206965.1| Foldase protein prsA 1 [Bacillus cereus F65185] gi|228709250|gb|EEL61340.1| Foldase protein prsA 1 [Bacillus cereus F65185] Length = 286 Score = 93.9 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 25/235 (10%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY--KDNYRAPEYKRISYILFDV 239 ++ E +D +++ D + F+ Y + N R + + Sbjct: 61 LQQVMLEKILLDKYKVSDDETKKKVDELKKEMGDSFKSYLTQKNVRNEDELKDKLKTQMA 120 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 EK K I+ E++ Y+ I V ++ ++K A E + + G+ F L Sbjct: 121 FEKAIKASITEKEIKDYYK---------PILKVSHILVKDEKMAKEIKEKINNGEDFTTL 171 Query: 300 AEEQGKSLS----DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A+E + LG + + D ++ + L + G + I SFGY I + Sbjct: 172 AKEHSEDPGSKEKGGELGELNAFQMDRMDPKFKEATYKL-EAGQVSEPIKSSFGYHIIKM 230 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKA-----SEKVKEDYKRLEEFLALGTSMDE 403 + K +F + K++I ++ + +K +D + + + + Sbjct: 231 TEKKE--LKTFNQEKENINKELEAKRLTDQQWQQKFFKDLFKQADIKITDKDLKD 283 >gi|261855875|ref|YP_003263158.1| SurA domain protein [Halothiobacillus neapolitanus c2] gi|261836344|gb|ACX96111.1| SurA domain protein [Halothiobacillus neapolitanus c2] Length = 465 Score = 93.5 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 62/478 (12%), Positives = 150/478 (31%), Gaps = 88/478 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + +Q I+ + ++ + L++++LD +++ Sbjct: 53 DRIVAVVNQSVITQRQLNDRIQQVSSQINIQ---ALSPSDFKQ--LEERVLDRMITEEVE 107 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D R+ + R G++ Sbjct: 108 LQRAKQIGITVDEQRLDSALDGIA------------------QRNGMS------------ 137 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + N D ++ + L R V D ++ + ++ ++ Sbjct: 138 -LDQLQQAVTRQGEDWNAYRDNIRK------QIIIDELKRREVYERVDITDRDIDEYLKQ 190 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 Y ++ IL V E ++ N Sbjct: 191 YMGADTDTTEYHLAQILISVPENATPSQVENA---------------------------- 222 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 +K AD+ +LK G+ F +++ E+ + LG IP + D++ SL K G Sbjct: 223 KKRADDVMAALKAGQDFAKVSAERSDAPDATKGGDLGWRDMSRIPGL-FTDTVKSL-KTG 280 Query: 337 DFTPVIHGSFGYVIAHVS---NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-E 392 + + +I G+ I + T + + + Q+ + + K ++L + Sbjct: 281 EISGLIRSPNGFHILKLLGERKRTAGNTQLTEYEAEHVLIQVNGKRDATAAKAQAEKLRQ 340 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 E ++ + EI+ + G V F + P+ K Sbjct: 341 EIISGKATFAEIASKYSDDKGSAQQGGLLGWVNPSDMVPE--------FATMLEQTPVGK 392 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 V + ++++ ++ + +++ ++ + E++ + +L E Sbjct: 393 ISPVFQTQFGFHFLEVLKTREVQVPT-DKLRAQARQAIGQRRADEDLVNYIRRLRAEA 449 >gi|192358925|ref|YP_001981367.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus Ueda107] gi|190685090|gb|ACE82768.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus Ueda107] Length = 437 Score = 93.5 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 50/391 (12%), Positives = 118/391 (30%), Gaps = 58/391 (14%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + + I +++ V L+K+IL+ L+ + + D + Sbjct: 50 LESELNERKASIMERLQGQYQQLPPEDV-LNKQILEQLIVERIELGLAKRYDISIDEAEI 108 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRP 174 IAR + N+ S + L R+G++ + K L+ + V ++ Sbjct: 109 DQAIARI----AQKNQVSAAALEADLKRQGLDMSGLREQLRKDLTINQLQQGVVNSRIKI 164 Query: 175 SNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNY 224 S +D + I +++ + + + ++K + ++ Sbjct: 165 SEQDIDNFLASSDGKYATSPDYHIGHILISVSSSADAEMVEQAENQANDIYKKLQGGADF 224 Query: 225 -------------------------RAPEYKRISYILFDVHEKEKKIEISND-ELQAEYE 258 + PE + + K + E Sbjct: 225 AQMAISYSKDQAALQGGDIGWRKLAQLPELFGNEMMKLSPGQVSKPFRSGAGFHILKNIE 284 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKS--- 306 + E ++ + D+ + + KG+ F +LA E + Sbjct: 285 QRGGGAQMVEQTHARHILVKTSEIMDDRQAREKLLGLRERILKGEDFAKLARENSEDTGS 344 Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LS LG + + +++ + GD + FG+ I V + + Sbjct: 345 MLSGGDLGWSTPGMFV-PAFEEAM-AQTGIGDISRPFKSQFGWHILQVLERRQTDMSDRM 402 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + AN +R + E+ + ++ E Sbjct: 403 K-RNQAANVLRSRRFDEEFQLWLTQIREEAY 432 >gi|118474611|ref|YP_891704.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40] gi|118413837|gb|ABK82257.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40] Length = 269 Score = 93.5 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 11/164 (6%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292 + ++ I++ + + YE+NK+K+ P + ++ +KEA + +SL Sbjct: 99 MKKQFDAIKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAAL 158 Query: 293 GKKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KKF ++A+E+ +++ LG F + + S + + F L K + FGY Sbjct: 159 DKKFSEIAKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGLKKGEITNKPVKSEFGY 217 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++K V F + K +I NQM+ + +++ L+ Sbjct: 218 HVILKEDMKDKSAVGFDKAKANIENQMKSEEFRTVMQKKVSDLK 261 >gi|241759093|ref|ZP_04757204.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114] gi|241320695|gb|EER56948.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114] Length = 329 Score = 93.5 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 32/356 (8%), Positives = 97/356 (27%), Gaps = 90/356 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V + + + Q + + + + L +++L +++ + Sbjct: 52 SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + IA +P + Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + +V + + + S++ + ++ E Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K + + + +Y + Sbjct: 173 QAKQQ---------------------GVTLPEADPVRQYHAQHILIKADNDNAA----VG 207 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + + + + G F LA + + S LG F+ + +++ L K Sbjct: 208 AESTIRKIYSQARSGADFGGLARQYSQDSSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + + FG+ I +++++ + T + + + + KA + + L Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320 >gi|15837440|ref|NP_298128.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c] gi|81788857|sp|Q9PF40|SURA_XYLFA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|9105742|gb|AAF83648.1|AE003923_6 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c] Length = 464 Score = 93.5 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 49/429 (11%), Positives = 120/429 (27%), Gaps = 65/429 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + G + E L +++L+ L+ Sbjct: 34 DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + I+ ++NK S D +L EGI+ E+ + Sbjct: 89 VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQA-------KRFYFENRSV--------DYIVLNNRHVP 203 + + F + S +D A +++ ++ V I + + + Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQASSGAQYHLQHILVAVPDGATSQQIAIAQKKID 204 Query: 204 AIADPSNAVLTQW------FEKYKDNYRA-----------PEYKRISYILFDVHEKEKKI 246 I + + + + + PE + + Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264 Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290 ++ E++ ++ + + D + Sbjct: 265 RGTSGFQLLKLVEVRDSAAAAAGPRQMATEYHARHILVRITEKQKEAEAKAKIDTLRARI 324 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +A E + + LG F + + + +LA G+ + + Sbjct: 325 AGGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAA 382 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + + + + + I + + K E + + L + ++E + Sbjct: 383 GWHIVQRLGTRQTDV-TRENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIEEPAD 441 Query: 407 REKIVSIDL 415 + S + Sbjct: 442 DHQTPSAAV 450 >gi|218896099|ref|YP_002444510.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus G9842] gi|228899723|ref|ZP_04063971.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222] gi|228906786|ref|ZP_04070655.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200] gi|228964109|ref|ZP_04125234.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|218541193|gb|ACK93587.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus G9842] gi|228795596|gb|EEM43078.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228852790|gb|EEM97575.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200] gi|228859905|gb|EEN04317.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222] Length = 289 Score = 93.5 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 39/246 (15%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ D + + M + + K + E++ VD Sbjct: 35 ITKEEFYDQMKTQAGKQVLNNMVMEKVL--------IKNYKVEDKDVDKKF--------- 77 Query: 206 ADPSNAVLTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 + + Q+ ++ K E + S EK + I++ +++A++E K Sbjct: 78 ----DEMKKQYGDQFDTLMKQQGIKEETIKNSVRAQLAQEKAVEQSITDKDVKAKFEDYK 133 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 ++ ++ +++ A + L +GK F +LA++ + LG F Sbjct: 134 KEI------KASHILVKDEETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGP 187 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + ++ L KK + + + FGY I V++ +F + K DI + Sbjct: 188 GKMVK-EFEEAAQKL-KKDEVSEPVKTQFGYHIIKVTDNHADA--TFDKSKADIKKSLAQ 243 Query: 378 TKASEK 383 K + Sbjct: 244 EKTQDA 249 >gi|53805075|ref|YP_113118.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus str. Bath] gi|81682783|sp|Q60B78|SURA_METCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|53758836|gb|AAU93127.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus str. Bath] Length = 454 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 54/417 (12%), Positives = 138/417 (33%), Gaps = 67/417 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + + + + + L +++L+ ++ Sbjct: 31 DRIVAVVDDGVILESELVRKVDEIKRSLRAS-RASLPPDSV----LVRQVLERMIVDKIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH----- 154 Q E +G++ D + +++ + N + D F LAREGI+ +++D Sbjct: 86 IQMAEKMGIQVDDDTLRMAVSQI----AQRNNLTPDQFRRSLAREGIDYGDFLDQVRSEI 141 Query: 155 ----YTKMLSRTDV------VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 + V ++ S + D+ R + V Sbjct: 142 AMGRLRASQINNQIKISDREVEHYLEAQGGSGAVADREYRLGH-ILIATPREASPDEVKK 200 Query: 205 IADPSNAVLT------QWFEK---YKDNYRAPEYKRISYILFD--VHEKEKKI------E 247 + ++ V+ + + Y D+ +A E + + + + E Sbjct: 201 ARERADRVVKELKAGLDFKDASIRYSDDPQALEGGDLGWRKLSEIPSHIAEVVGGMKDGE 260 Query: 248 ISNDELQ----AEYEKNKEKYFSPEIR----TVEQLVFP-----NQKEADEAFQSLK--- 291 +S+ ++ K E + V ++ + ++A +LK Sbjct: 261 VSDP-IRSPGGYHIVKMLAMRGVGEAKLTKTHVRHILIRPNEVLSDEDAKNKLLALKTRI 319 Query: 292 -KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA ++G ++ LG + +++ +L + + + F Sbjct: 320 ENGDDFAELARGHSDDKGSAIKGGDLGWVKPGALV-PPFEEAMNALDEN-QLSDPVQTQF 377 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 G+ + V + S + + +K +++ K E+ + +++ + + +DE Sbjct: 378 GWHLIQVLERQESSDTN-EVLKNRARDELFKRKVDEETELWLRKIRDEAYVEIRLDE 433 Score = 66.9 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 23/249 (9%) Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVFPNQK 281 ++ I+ + +I+IS+ E++ E + + ++ + Sbjct: 132 DFLDQVRSEIAMGRLRASQINNQIKISDREVEHYLEAQGGSGAVADREYRLGHILIATPR 191 Query: 282 EA------------DEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326 EA D + LK G F + + ++L LG IP Sbjct: 192 EASPDEVKKARERADRVVKELKAGLDFKDASIRYSDDPQALEGGDLGWRKLSEIPSHIAE 251 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI---TKASEK 383 + K G+ + I GY I + ++ K + + + + E Sbjct: 252 --VVGGMKDGEVSDPIRSPGGYHIVKMLAMRGVGEAKLT--KTHVRHILIRPNEVLSDED 307 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 K L+ + G E++R G G V L Sbjct: 308 AKNKLLALKTRIENGDDFAELARGHSDDKGSAIKGGDLGWVKPGALVPPFEEAMNALDEN 367 Query: 444 FGKDDPLSK 452 D ++ Sbjct: 368 QLSDPVQTQ 376 >gi|212694486|ref|ZP_03302614.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855] gi|237711177|ref|ZP_04541658.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA] gi|237727542|ref|ZP_04558023.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4] gi|265750767|ref|ZP_06086830.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA] gi|212662987|gb|EEB23561.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855] gi|229434398|gb|EEO44475.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4] gi|229455021|gb|EEO60742.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA] gi|263237663|gb|EEZ23113.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA] Length = 710 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 95/721 (13%), Positives = 201/721 (27%), Gaps = 126/721 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + + + + F+ L G V V + + + Sbjct: 4 LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61 Query: 62 QELGMISQKIG-FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119 + +I G +N ++ + ++ + V+ + +GL V I Sbjct: 62 EYTEVIKLTQGVSALNDDQLTQ--VKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIE 119 Query: 120 -------ARSPLFHGKDNKFSHDVFVSR------LAREGINEKEYIDHYT---------- 156 ++P + + F D+ L + +Y+++Y Sbjct: 120 EGTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKM-PAQYVEYYQKMGAFWNFIE 178 Query: 157 ----KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-------- 204 + + + + + + A E V + + Sbjct: 179 KTLIQSTLAEKYQNLIAKSLISNPVAAEDAFISRTEQSDVLLAAIPYSSISDSTITVSNS 238 Query: 205 ---------------------------IADPSNAVLTQWFEK------------YKDNYR 225 + PS+ + + + + Sbjct: 239 EIKDLYNKKKGSFEQPVETRNIKYIDVLVTPSDEDRKEVLNEVTEYATQLGTAADMNTFI 298 Query: 226 APE-------YKRISYILFDVHEKEKKIEISNDELQA-EYEKNKEKY---------FSPE 268 I+ ++ + ++ +E+ Y + + Y +P+ Sbjct: 299 RSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYYNQADDSYNAFKIIAKQTAPD 358 Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIP 321 Q+ + A D F +LK G F +A++ G++ L + + + Sbjct: 359 SIQYRQIQVYAEDAAKTATLADSIFNALKGGADFTDIAKKYGQTGEATWLTARNYEGAAL 418 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 D A I +L + + G VI V + K V I + +K Sbjct: 419 DADNAKYINTLINSN-VKELTNLQIGQANVILQVLDKKAMKDKYKVAV---IKRPVEFSK 474 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 E + Y +F+A T+MD+I + L ++ A V + + Sbjct: 475 --ETYNKAYNDFSQFVAQNTTMDKIIANAEESGYRL--LERADFRSAEHRVGGVKGTREA 530 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 L +F + + M V +++ PA R + V +K + K Sbjct: 531 LKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDK----- 585 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF---GYDGISQVFSGP 556 KA +L+ E K + + A + I + S Sbjct: 586 --KAEKLIAE-MKSASSIDQVKSMANAVSDSVKHITFSAPAYVSVTRASEPALGAYASKA 642 Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 PI+ + +V N + + K M S I L + V Sbjct: 643 EINKLTGPIKGNAGVYMIQVYNKEKSAEEFDAKNEENNLSNMAGRYASSFINDLYKKADV 702 Query: 617 T 617 Sbjct: 703 K 703 >gi|301312046|ref|ZP_07217968.1| putative PPIC-type PPIASE domain protein [Bacteroides sp. 20_3] gi|300830148|gb|EFK60796.1| putative PPIC-type PPIASE domain protein [Bacteroides sp. 20_3] Length = 522 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + +P V ++ K+ A ++ +++G F +LA+E + Sbjct: 221 SRKPNPGRVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 280 Query: 310 ISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 G F + + F+L+K GD + V+ FGY I + + K SF+ Sbjct: 281 AKKGGVLPWFGIGEMVQP-FEQAAFALSKPGDLSGVVETRFGYHIIKLIDKKGR--PSFE 337 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395 E +K ++ +M E+ E YK ++ + Sbjct: 338 EEEKALSRRMGQ---GERNFELYKAFDDRM 364 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%) Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + PE TV + +EA ++ L+KG+ + + + + + + +P Sbjct: 129 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 187 Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S D+ +SL G + + G+ + V + KP V + + + Sbjct: 188 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRVHVAHILIAFPKDSAI 244 Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + + + + G E+++ + G+ V Sbjct: 245 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKGGVLPWFGIGEMVQPFEQ--- 301 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 F P V G ++ I + Sbjct: 302 ---AAFALSKPGDLSGVVETRFGYHIIKLIDK 330 >gi|182414803|ref|YP_001819869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae PB90-1] gi|177842017|gb|ACB76269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae PB90-1] Length = 328 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 48/367 (13%), Positives = 104/367 (28%), Gaps = 78/367 (21%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 D L + V + + + + ++ + L ++ Sbjct: 25 GDNLNLRFANGIAAIVEDKVITVDDVRREIAPLIAQLQREARNEREFNE-KLEQLQDDVI 83 Query: 91 DNLVSGATLDQFIE-DIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGIN 147 +L+ + + D + +A +F +D F++ L G Sbjct: 84 QSLIDRVLIVKEFRKDEKKHIPDSFIDNRLADI-----LSEQFDNDRSKFLAYLHSRGTT 138 Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 +EY + + + E R I Sbjct: 139 LREYRREVEEDIIYQYMRQ---------------------EQRKSQSI------------ 165 Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 S + ++ + KD + + + I F E ++++L+ Sbjct: 166 VSPVRIETFYNENKDRFYQEDGVHLRLIQFSRANGE-----TDEDLR------------- 207 Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVS 324 +A+ +K G+KF LA E + G + + Sbjct: 208 -------------AKANLVMARIKAGEKFEDLAREYSQDSRRAKGGDWGWQKRSDL-KPE 253 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 ++ +FSL KKG+ + I G I + K + EV+ +I + + Sbjct: 254 FSEPLFSL-KKGEVSDPIILPEGCFILFAEDRKYAGIQPIDEVRDEIERVLVQQMSRNSQ 312 Query: 385 KEDYKRL 391 + +RL Sbjct: 313 EHWLERL 319 Score = 38.4 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 +T E++ +KAN LV+ K G+ F D+ + + + + +F Sbjct: 201 ETDEDLRAKAN-LVMARIKAGEKFEDLAREYSQDSRRAKGGDWGWQKRSDLKPEFSEPLF 259 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQE-KDKFISYLTQMMNKDLLDSVIAYL 610 S V I +++F + + P+ E +D+ L Q M+++ + + L Sbjct: 260 SLKKGEVSDPIILPEGCFILFAEDRKYAGIQPIDEVRDEIERVLVQQMSRNSQEHWLERL 319 Query: 611 KSQYSVT 617 + V Sbjct: 320 RRNGYVK 326 >gi|295397248|ref|ZP_06807346.1| peptidyl-prolyl cis-trans isomerase [Aerococcus viridans ATCC 11563] gi|294974529|gb|EFG50258.1| peptidyl-prolyl cis-trans isomerase [Aerococcus viridans ATCC 11563] Length = 376 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 12/156 (7%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++ Y K IE++++E+Q Y+ + V ++ +++ A + L Sbjct: 120 QVYYYKLMSESVSKYIEVTDEEIQTAYDDYTPSFT------VSHILVDDEETAKDLIAQL 173 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +LA+E S SLG + + D + + LA+ T + + Sbjct: 174 DDGADFAELAKENSTDTSSAKNGGSLGEVNADSGLDETFFAAAQELAEGEYTTAPVETDY 233 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 GY I + S ++ + + + K ++ Sbjct: 234 GYHIIKMDE--KPEKGSLEDETEQLKESIVAEKLTD 267 >gi|198284724|ref|YP_002221045.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249245|gb|ACH84838.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993] Length = 477 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 61/469 (13%), Positives = 139/469 (29%), Gaps = 89/469 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + E L +++L ++ Sbjct: 72 DKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDI----LRRQVLQQMILQDIE 127 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q G++ D + I+ + N + D LA +G + + + Sbjct: 128 LQIAHRAGIKVDKATLDQAISNL----AQANHLTPDQLRQALANQGQSWERFTHDLED-- 181 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 +L+D+ + ENR + + ++ Sbjct: 182 ----------------RILVDRLMQQEVENR---------------VHIGPDEVKTFAQQ 210 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K E +S+ L + + V Sbjct: 211 LK------EMGGVSFDLQQIFIPLPDNPTPDA------------------------VGAA 240 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +++A++A + G++F ++A + +L LG +P ++A ++ L K G Sbjct: 241 RRDAEQARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELP-PAVAQTLLQL-KVG 298 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + +PVI G G+ I + ++K + I + + ++ + + +++ L Sbjct: 299 EISPVIPGPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQALQ 358 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 GT E++R G G+ L R P + Sbjct: 359 SGTRFSELARSYSQDPRTAANGGEMGWVAPGQ-------LPDSLERTLLTLQPGGVSSPI 411 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + Y+ S R + +EE + + V + ++ Sbjct: 412 RVGNAIYIL----HSQAQRQQAVEE--KQIMAAARMQLYNRIVHERMDE 454 >gi|71275093|ref|ZP_00651380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Dixon] gi|71899689|ref|ZP_00681842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|170731077|ref|YP_001776510.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12] gi|71163902|gb|EAO13617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Dixon] gi|71730557|gb|EAO32635.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Ann-1] gi|167965870|gb|ACA12880.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12] Length = 468 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 49/420 (11%), Positives = 113/420 (26%), Gaps = 65/420 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + G + E L +++L+ L+ Sbjct: 34 DRIVAVVDDNVVLKSELDRAIHNVKSQYVGHEGQLPPDEV-----LQRQVLERLILIKLQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + I+ ++NK S D +L EGI+ E+ + Sbjct: 89 VARAQTNGIRVSDDELNQAISSI----AENNKTSVDGLRQKLVAEGISFPEFRQSVRDEI 144 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYF--ENRSVDYIVLNNRHVPAIADPSNAV---- 212 + + F + S +D A + +I++ + A Sbjct: 145 TVHHLRQGFAQSRIVVSEGEVDTALAQANSGAQYHLQHILVALPDGATSEQIAVAQKKIN 204 Query: 213 -LTQWFEKYKDNYRA-------------------------PEYKRISYILFDVHEKEKKI 246 + +K + + A PE + + Sbjct: 205 GIKSVIDKGELAFSAAAVRYSDSPNALESGDLGWRSLDEIPEAFAQMVQTMKPGQIVGPL 264 Query: 247 EISND-------ELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSL 290 ++ E++ ++ + + D + Sbjct: 265 RGTSGFQLLKLVEVRDSAAAAAGPRQMATEYHARHILVRITEKQKEAQAKAKIDTLRARI 324 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G F +A E + + LG F + + + +LA G+ + + Sbjct: 325 AGGADFQTVARESSEDANNSNQGGDLGWFPSDAF-GADFGNHVKALA-DGNVSEPFRSAA 382 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 G+ I + + + + I + + K E + + L + ++E + Sbjct: 383 GWHIVQRLGTRQTDVTK-ENQRAQIRDTIGQRKLEESYERFLRELRSEAYVSLQIEEPAD 441 >gi|91788447|ref|YP_549399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] gi|91697672|gb|ABE44501.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] Length = 261 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 4/156 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +KK +++ +L+ EY+K E + ++ + EA SLKKG KF + Sbjct: 105 ADYQKKNPVTDADLKGEYDKFAAANGGKEYK-ARHILVEKEAEAKAIIASLKKGGKFEDI 163 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++Q K + G P ++++ L K + FGY + V +I Sbjct: 164 AKKQSKDPGSGAKGGDLDWANPSGYVPEFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDI 223 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + SF+EVK IA QM+ K + ++ K+ + Sbjct: 224 RNAQLPSFEEVKPQIAQQMQQQKLATFQEDLRKKAK 259 >gi|227114234|ref|ZP_03827890.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 431 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 124/393 (31%), Gaps = 66/393 (16%) Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 NS Q + + +Q+ G + L +I D L+ + Q + +G++ ++ Sbjct: 43 NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLNQ 98 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGM 172 I N+ S D S+LA EG+N Y + K + +V Sbjct: 99 AITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRITVLP 154 Query: 173 RPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEY 229 + + L Q EN ++ I++ P A L K + Sbjct: 155 QEVDTLAKQIATQTGENDELNLSHILIPLSENPTQQQVDEAENLATSLVKQINEGADFGK 214 Query: 230 KRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIR------------------ 270 I+Y K ++ E+ + + + ++ Sbjct: 215 LAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR 274 Query: 271 -----------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGK 305 ++ Q + E Q +K G F L+++ G Sbjct: 275 GGNKSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLLSQDPGS 334 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + LG S + + D + D++ L KKG+ + +H SFG+ + + + + Sbjct: 335 ANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPVHSSFGWHLIQLLDTRQVDKTD-- 390 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 R+ + +E ++E A Sbjct: 391 --AAQKEQAYRMIFNRKFAEEAQTWMQEQRAAA 421 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 112/329 (34%), Gaps = 34/329 (10%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 S L +N ++ + + + N++L A++ + + + + Sbjct: 43 NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLNQ 98 Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 ++ A S L + + YR K + +E ++I + E+ Sbjct: 99 AITNIAAQNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVD 158 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302 ++ + + + ++ P Q++ DEA + + +G F +LA Sbjct: 159 TLAKQIATQTGENDELNLSHILIPLSENPTQQQVDEAENLATSLVKQINEGADFGKLAIT 218 Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + G + + +L + A+KG I G+ I V++I+ Sbjct: 219 YSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277 Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 S + + + ++A K+ E ++++ G++ + + + K++S D Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKN----GST--DFASQAKLLSQD 331 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + G P L ++ Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360 >gi|194335197|ref|YP_002016991.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1] gi|194307674|gb|ACF42374.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1] Length = 438 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 62/451 (13%), Positives = 141/451 (31%), Gaps = 98/451 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V VG + + S + + + + E ++ GL + ILD L+ + Sbjct: 29 DRIVAVVGNEVIFKSEIDS---------RELMARMQYPELTKNNGLSRSILDGLIDQKII 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + + D + S F KF+ +R G + ++ + L Sbjct: 80 LAKAKIDSVSIDENSISSA--ASERFRELGTKFTSKA--DMESRLGKSSAGILEGIRQEL 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 +V R A S + ++ Sbjct: 136 RNQQLVDTLR------------------------------RKKSAGVTVSYDEVMAFYSA 165 Query: 220 YKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 K+ + PE +S + K +S +E Sbjct: 166 NKEQIPQIPEEVSVS-------QILKYPPVSAEE-----------------------KAQ 195 Query: 279 NQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 + + +K G F +A ++ G + S LG +K + S ++ ++L Sbjct: 196 SLATMERIRTEIKGGADFAAMARQYSQDPGSAQSGGDLGFVAKGQLI-PSFENAAYAL-N 253 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-- 392 +G + ++ +GY + + + +P+ V+ + + + S ++L Sbjct: 254 EGKISDIVETRYGYHLIQLLSKEPNSI----HVRHIL---IGFDRKSGDFSSVTRQLNAV 306 Query: 393 --EFLALGTSMDEISRREKI----VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + L + +++++ + ++ + +A P +Q+L + K Sbjct: 307 RADVLGGKETFADMAKKYSEDPASAAQGGTILLSGSSNPLFSPLALRPQLQQILSTL-QK 365 Query: 447 DDPLSKDHTVALPDGS--YMWVQIKESIPAR 475 +S+ + P G Y ++ E IPA Sbjct: 366 SGDISEVQKIDPPQGEPFYAIYRLNERIPAH 396 >gi|270263924|ref|ZP_06192192.1| chaperone SurA, precursor [Serratia odorifera 4Rx13] gi|270042117|gb|EFA15213.1| chaperone SurA, precursor [Serratia odorifera 4Rx13] Length = 432 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 65/445 (14%), Positives = 139/445 (31%), Gaps = 70/445 (15%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L ++ + A + V +V V S +NS Q + + +Q+ G Sbjct: 6 TLILGLVVCA------NTAFAAPQEVDKVAAVVDNGVVLESDVNSLLQSVKLNAQQAGQQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + L +IL+ L+ Q + +G+ + I NK S Sbjct: 60 LP----DDATLRHQILERLIMDNIQLQMAKKMGIAVSDADLDKAIGNIAA----QNKMSI 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR--- 190 D SRLA EG+N Y K + ++V + +D + Sbjct: 112 DQMRSRLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGAQNGSD 171 Query: 191 ---SVDYIVLNNRHVPAIADPSNAVL--------------------------TQWFEKYK 221 ++ +I++ P+ A Sbjct: 172 TEMNISHILIPLPENPSQQQVDEAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNM 231 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV 276 + E + +K + + K + + + ++ Sbjct: 232 GWGKLQEIPTLFAERLASAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHIL 291 Query: 277 FP---------NQKEADEAFQSLKKG-KKFI----QLAEEQGKSLSDISLGSFSKEYIPD 322 + + +++K G KF QL+++ G +L LG S + I D Sbjct: 292 LKPSVVLTDDQARAKLQAVAEAIKSGNAKFADEAKQLSQDPGSALQGGDLGWASPD-IYD 350 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + D++ L KG+ + +H SFG+ + + + + + K + K +E Sbjct: 351 PAFRDALMKL-NKGEVSKPVHSSFGWHLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAE 408 Query: 383 KVKEDYKRLEEFLALGTSMDEISRR 407 + + + + A +D +++ Sbjct: 409 EAQTWMQE-QRAQAYVKILDGNAQQ 432 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 19/240 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR+ K + +E +++ I E+ A ++ + S + ++ P Sbjct: 124 NYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNISHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325 + A + + G F +LA + G+ + ++ Sbjct: 184 PENPSQQQVDEAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLF 243 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD-IANQMRITKASEK 383 A+ + S AKKGD I G+ I V++I+ + +VS EV I + + ++ Sbjct: 244 AERLAS-AKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQ 302 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + E + G + + K +S D G P L ++ Sbjct: 303 ARAKLQAVAEAIKSGN--AKFADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALMKL 360 >gi|242238056|ref|YP_002986237.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya dadantii Ech703] gi|242130113|gb|ACS84415.1| Peptidylprolyl isomerase [Dickeya dadantii Ech703] Length = 433 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 66/410 (16%), Positives = 130/410 (31%), Gaps = 67/410 (16%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 V +V V S INS Q + M SQ+ G + L +IL+ L+ + Sbjct: 26 DKVAAVVDNGVVLESDINSLMQSVKMNSQESGQQLP----DDATLRHQILERLIMDNIVL 81 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + +G + ++ IA + N + D SRLA EGIN Y K ++ Sbjct: 82 QMAQKMGAQVSDDQLDRAIANI----AQQNHMTLDQLRSRLAAEGINYDTYRSQIRKDMT 137 Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 DV + +D + S + L+ +P +PS + + E Sbjct: 138 IADVRNSEVRRRVTVLPQEVDALAQQIASQGSDKEVNLSQILLPLPENPSQEQVDK-AES 196 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKNKEK-------- 263 + + + + + EL + + + Sbjct: 197 LANRLVKDARQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERLANPEKGQVIG 256 Query: 264 ----------YFSPEIR-----------TVEQLVFPN-----QKEA----DEAFQSLKKG 293 + R ++ +A ++ + +K G Sbjct: 257 PIRSGVGFHILRVNDTRGGNQAISVTETHARHILLKTSVVMNDAQARTKLEDVARQIKSG 316 Query: 294 -KKFIQ----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F L+++ G + LG S + + D + D++ L KKG+ + + SFG+ Sbjct: 317 STSFAAQAKLLSQDPGSANQGGDLGWASPD-MYDPAFRDALMQL-KKGEISAPVRSSFGW 374 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + + + R+ + +E ++E A Sbjct: 375 HLIQLLDTRQVDKTD----AAQKERAYRMLFNRKFAEEAQTWMQEKRASA 420 >gi|107099580|ref|ZP_01363498.1| hypothetical protein PaerPA_01000593 [Pseudomonas aeruginosa PACS2] gi|313111760|ref|ZP_07797553.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa 39016] gi|310884055|gb|EFQ42649.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa 39016] Length = 404 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 44/408 (10%), Positives = 130/408 (31%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + ++ G + E L +++L+ L+ Sbjct: 5 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 59 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S + F + L R+G++ + + + + Sbjct: 60 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYADAREQVRREM 115 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQA-------KRFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ S + + E R + ++ + + + Sbjct: 116 VISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAA 175 Query: 211 AVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + Sbjct: 176 RQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVT 235 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ +K A + ++ ++ G Sbjct: 236 EPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQSG 295 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L E + + + +G+ + FG+ Sbjct: 296 EDFGELAKSFSEDPGSALNGGDLNWIDPEALV-PEFRQ-VMNDTPQGELSKPFRSQFGWH 353 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + F+E + + +R K E+++ +++ + Sbjct: 354 ILQVLGRRATDSSEKFRE--QQAVSVLRNRKYDEELQAWLRQIRDEAY 399 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 42/321 (13%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKE-YIDHYTKMLSRTDVVGM 167 RV + + + ++ +V + L R + + + L ++ Sbjct: 2 VPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQ 61 Query: 168 F--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 G+R S+ L+QA + + ++A R Sbjct: 62 IGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYADA-------------R 108 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--- 282 + + ++I++S E++ + K E + ++ P + Sbjct: 109 EQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASS 168 Query: 283 ---------ADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIF 330 A E +Q LK+G F QLA + +L +G +P I Sbjct: 169 DVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQP-FDSMIG 227 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASE 382 SLA GD T + G++I + + + EV +I ++ K ++ Sbjct: 228 SLA-VGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQ 286 Query: 383 KVKEDYKRLEEFLALGTSMDE 403 K+ E + E+F L S E Sbjct: 287 KLYERIQSGEDFGELAKSFSE 307 >gi|228984336|ref|ZP_04144517.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154831|ref|ZP_04282946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342] gi|228628779|gb|EEK85491.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342] gi|228775453|gb|EEM23838.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 285 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 17/148 (11%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + K ++ +++ Y+ PEI+ ++ ++ EA E + L G F + Sbjct: 115 AMNEAIKKSVTEKDVKDHYK--------PEIK-ASHILVSDENEAKEIKKKLDAGASFEE 165 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+++ + L LG F + + + L K G + + GY I ++ Sbjct: 166 LAKQESQDLLSKEKGGDLGYFHSGAMT-PEFETAAYKL-KIGQISDPVQSPNGYHIIKLT 223 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 K + EVK I + + ++ Sbjct: 224 GKKD--LQPYNEVKDSIRKNLEAERIAD 249 >gi|89901176|ref|YP_523647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] gi|89345913|gb|ABD70116.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] Length = 261 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 +K +++ +++AEY+K E R ++ + +A LKKG KF ++ Sbjct: 105 ANYQKTSPVTDADIKAEYDKFAAANSGKEYR-ARHILVEKEDQAKAIIAQLKKGGKFDEI 163 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K + G P + ++ L K + FGY I + ++ Sbjct: 164 AKKSSKDPGSGANGGDLDWANPSNYVPEFSQALIKLTKGQTTETPVKSQFGYHIIRLDDV 223 Query: 357 KPSFTVSFQEVKK 369 + + F +VK Sbjct: 224 RDAQLPKFDDVKP 236 >gi|294644737|ref|ZP_06722483.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|292639909|gb|EFF58181.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] Length = 696 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 90/705 (12%), Positives = 204/705 (28%), Gaps = 124/705 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-AREGINEKE--------------------- 150 + ++P F F D+ L ++E + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 151 ----------YIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 Y +K L V + G+ S+++ Sbjct: 179 TLIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L E Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + Y K K + Sbjct: 298 IRSTGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAA 357 Query: 268 EIRTVEQLVFPNQKE------ADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417 Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 I ++ +I + + + VI V+N K V I ++ Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQAN--VILQVTNKKSVKDKYKVAV---IKREVEF 472 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +K E Y +F+A S++++ + L +D + + + Sbjct: 473 SK--ETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRMDLSSSEHNIGGVRGTK 528 Query: 438 QLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + L F K P + M V + P R L+ V ++ + K A Sbjct: 529 EALRWAFDKAKPGDVSGLYECGESDHMMVVGLVGIKPEGYRPLKAVQDQLRAEIVKDKKA 588 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E++ + + K + + ++T + + S Sbjct: 589 EKIMADMKAANATSFNQYKEMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASAA 645 Query: 557 VEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNK 600 PI+ V +V K+ + + LT M + Sbjct: 646 EVNQLSAPIKGNAGVFVLQVYGKDKLNETFDAKAEEATLTNMHAR 690 >gi|289422639|ref|ZP_06424480.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L] gi|289156939|gb|EFD05563.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L] Length = 349 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 93/287 (32%), Gaps = 51/287 (17%) Query: 146 INEKEYIDHYTKM--LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 I+ KE + + + M + + + + Sbjct: 33 ISSKEIENQLKFQKWMMESQYGEEVWTQMEAQDKNYQETMKKQVATSVSRIRAFTDYAEK 92 Query: 204 AIADPSNAVLTQWFEKYK------------------DNYRAPEYKRISYILFDVHEKEKK 245 P L ++ + K + + K + ++ +KK Sbjct: 93 NGVKPDQKQLKEFQAQNKKMLEDEKMKKSFEKTGLDEKFLDDFAKEKATMVSLSEYLKKK 152 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QKEADEAFQS 289 + + EL+ YEKN K ++ +K+AD+ ++ Sbjct: 153 SKPTEKELKDYYEKNSVKA------KAAHILLTTTDTNGKPLSPEKKAEVKKKADKIYEE 206 Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 K G F +LA+ + G + + LG F K + ++FS+ K+G+ + I Sbjct: 207 AKSGVDFKELAKKNSQDPGSAQNGGELGEFGKGQMV-PEFEKAVFSM-KEGEISKPIETQ 264 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +GY I + I S F +VK ++ + KA + + + Sbjct: 265 YGYHIIKLEKITKSE---FDKVKAEMEAALSQEKAQKLAQSIIDAAK 308 >gi|157368971|ref|YP_001476960.1| peptidyl-prolyl cis-trans isomerase SurA [Serratia proteamaculans 568] gi|157320735|gb|ABV39832.1| SurA domain [Serratia proteamaculans 568] Length = 432 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 65/445 (14%), Positives = 144/445 (32%), Gaps = 70/445 (15%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L ++ + A + V +V V S +++ Q + + +Q+ G Sbjct: 6 TLILGLVVCA------NTAFAAPQEVDKVAAVVDNGVVLESDVSTLLQSVKLNAQQAGQQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + ++ L +IL+ L+ Q + +G+ + I NK S Sbjct: 60 LPDDK----TLRHQILERLIMDNIQLQMAKKMGINVSDADLDKAIGNIAA----QNKMSI 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR--- 190 D SRLA EG+N Y K + ++V + +D Sbjct: 112 DQMRSRLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDSLAAQVGAQNGSD 171 Query: 191 ---SVDYIVLNNRHVPAIADPSNAVL--------------------------TQWFEKYK 221 ++ +I++ P+ A +A Sbjct: 172 TEMNISHILIPLPENPSQAQVDDAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNM 231 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV 276 + E + +K + + K + + + ++ Sbjct: 232 GWGKLQEIPTLFAERLVNAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHIL 291 Query: 277 FP---------NQKEADEAFQSLKKG-KKFI----QLAEEQGKSLSDISLGSFSKEYIPD 322 + + E +++K G KF QL+++ G +L LG S + I D Sbjct: 292 LKPSVVLTDDQARAKLQEVAEAIKSGRAKFADEAKQLSQDPGSALQGGDLGWASPD-IYD 350 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + D++ L+K G+ + +H SFG+ + + + + + K + K +E Sbjct: 351 PAFRDALMKLSK-GEVSQPVHSSFGWHLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAE 408 Query: 383 KVKEDYKRLEEFLALGTSMDEISRR 407 + + + + A +D +++ Sbjct: 409 EAQTWMQE-QRAQAYVKILDGNAQQ 432 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 27/244 (11%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR+ K + +E +++ I E+ + + + S + ++ P Sbjct: 124 NYNTYRSQIRKEMLISEVRNNEVRRRVTILPQEVDSLAAQVGAQNGSDTEMNISHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325 + A + + G F +LA + G+ + ++ Sbjct: 184 PENPSQAQVDDAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLF 243 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQMRITK 379 A+ + + AKKGD I G+ I V++I+ + +VS EV + + + Sbjct: 244 AERLVN-AKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQ 302 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A K++E + ++ A + K +S D G P Sbjct: 303 ARAKLQEVAEAIKSGRAK------FADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDA 356 Query: 440 LFRV 443 L ++ Sbjct: 357 LMKL 360 >gi|319781324|ref|YP_004140800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167212|gb|ADV10750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 5/137 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++++ E++A Y++ ++ ++EA+ + L G F +LA E Sbjct: 138 KVTDAEVRARYDQEIANTPPTNELHARHILVKTKEEAEAIIKQLDGGADFQKLANEHTSD 197 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S LG F + + +L + FG+ + + + + Sbjct: 198 PSGKTSGGDLGWFGPGQMV-PEFDKAASALEVGKYTEQPVQTQFGWHVIKLEDKRTKQPP 256 Query: 363 SFQEVKKDIANQMRITK 379 +F +VK + K Sbjct: 257 AFDDVKDQAKQAVIRDK 273 >gi|229028936|ref|ZP_04185035.1| Foldase protein prsA 2 [Bacillus cereus AH1271] gi|228732216|gb|EEL83099.1| Foldase protein prsA 2 [Bacillus cereus AH1271] Length = 285 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 14/198 (7%) Query: 194 YIVLNNRHVPAIADPSNA----VLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEI 248 Y ++ + S+ + + ++Y D + A E R+ ++ + K+ + Sbjct: 57 YEMMAQDVITKKYKVSDDDVDREVQKAKKQYGDQFTAVLENNRLKDEADFKNQIKFKLAM 116 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307 + ++ EK+ + ++ PEI+ ++ ++ EA E + L G F +LA+++ + L Sbjct: 117 NEAIKKSVTEKDVKDHYKPEIK-ASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLL 175 Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 LG F + + + L + + GY I ++ K + Sbjct: 176 SKDKGGDLGYFHSGTMT-PEFETAAYKL-NIDQISEPVKSPNGYHIIKLTGKKD--LQPY 231 Query: 365 QEVKKDIANQMRITKASE 382 EVK I + + ++ Sbjct: 232 DEVKGSIRKNLEAERIAD 249 >gi|126649428|ref|ZP_01721669.1| peptidylprolyl isomerase [Bacillus sp. B14905] gi|126593753|gb|EAZ87676.1| peptidylprolyl isomerase [Bacillus sp. B14905] Length = 326 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 28/276 (10%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY-------------RAPEYKRISYILFDVHEK 242 ++ + + + ++ L + ++ + +K + + Sbjct: 57 LVTEKVLSDKYEVTDKELKEAYDTTASQFGDGFAQALAESGLTEQGFKDSLRVQLLQEKA 116 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 K I ++++ YE+ K + ++ ++K A EA + +K G KF +A+E Sbjct: 117 LKDQAIKEEDVKKYYEQMKTELNG------RHILVADEKTAKEAIEKIKGGAKFADVAKE 170 Query: 303 QGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + LG FS + D D+ ++L + + + SFGY + +++ + Sbjct: 171 YSTDTASAQNGGELGWFSVGSMVD-EFNDAAYAL-ELNTLSEPVKSSFGYHVIEITDKRD 228 Query: 359 SFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 V +F++ ++ I M + E L++ +A + +K + L Sbjct: 229 VKDVGAFKDEEEKIRTSMLSKL--NQTGEAQTILKDIVAKMAKDANVKTSDKDLKDSLEF 286 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++ A E+ + D D Sbjct: 287 FTTTSEEQAKAAEEAAKKAEENAAKEESSDKAEDTD 322 >gi|325970754|ref|YP_004246945.1| hypothetical protein SpiBuddy_0924 [Spirochaeta sp. Buddy] gi|324025992|gb|ADY12751.1| hypothetical protein SpiBuddy_0924 [Spirochaeta sp. Buddy] Length = 536 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 59/429 (13%), Positives = 135/429 (31%), Gaps = 71/429 (16%) Query: 6 RKASRTWV-AKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFINSWKQ 62 RK + WV + L+++ V F++ +A S+ +V G+Q++ + + N + Sbjct: 54 RKITIGWVLGMLILILIAVSFVLAPAIEAFVGKRTSNGIVFGKYGKQEIKYV-YGNYFYD 112 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 ++ + + + + K D+ V +++ G+ A V I S Sbjct: 113 QVQNYANQYKSSGTDQTQALYQIWKSAYDSTVIFTAINELATKAGIIAADDVVNRAIINS 172 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 + KD KF + + A ++ + L VV G + S+ + Sbjct: 173 GAY-NKDGKFDVETYQKASAE---SKANVEKSIRRSLPYQIVVDDV-GTVLSSSAEAEYI 227 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + R+ Y+ ++ P N + +Q+ + K + Sbjct: 228 ATMASKGRTFRYLSVDQNQYP------NELASQYALQNKQLFYT---------------- 265 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE 301 + + ++A ++S+ G+ F A Sbjct: 266 ---------------------------MDLSIISVETAEQAKTVYESITSGQTTFEAAAV 298 Query: 302 EQGKSLSDISLGSFSK----EYIPDVSLADSIFSL--AKKGDFTPVIHGSFGYVIAHVS- 354 G + + + AD SL AK GD + + + V+ Sbjct: 299 ANSLDSYAAQEGKVGQLYYYGIVSNFKNADEALSLLSAKDGDVIGPFEANGSFTLYKVNS 358 Query: 355 ---NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 + + VK +A + + + D + A +DE++ + + Sbjct: 359 AAVESDYADETTLASVKAYLA--VNDSALIDSYLSDLAKSWAETAKAEGLDEVALKNNLE 416 Query: 412 SIDLPLVDF 420 + + + Sbjct: 417 VVAVGATPY 425 >gi|262383886|ref|ZP_06077022.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294784|gb|EEY82716.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 533 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + +P V ++ K+ A ++ +++G F +LA+E + Sbjct: 232 SRKPNPGQVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 291 Query: 310 ISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 G F + + F+L+K GD + V+ FGY I + + K SF+ Sbjct: 292 AKKGGGLPWFGVGEMVQP-FEQAAFALSKPGDLSGVVETRFGYHIIKLIDKKGR--PSFE 348 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395 E +K ++ +M E+ E YK ++ + Sbjct: 349 EEEKALSRRMGQ---GERNFELYKAFDDRM 375 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 15/212 (7%) Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + PE TV + +EA ++ L+KG+ + + + + + + +P Sbjct: 140 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 198 Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S D+ +SL G + + G+ + V + KP+ V + + + Sbjct: 199 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKPNPGQ--VHVAHILIAFPKDSAI 255 Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + + + + G E+++ + G+ V Sbjct: 256 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKGGGLPWFGVGEMVQPFEQ--- 312 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 F P V G ++ I + Sbjct: 313 ---AAFALSKPGDLSGVVETRFGYHIIKLIDK 341 >gi|149377958|ref|ZP_01895684.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola DG893] gi|149357732|gb|EDM46228.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola DG893] Length = 429 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 50/397 (12%), Positives = 123/397 (30%), Gaps = 72/397 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S G + + G + L++++L+ L+S + Sbjct: 21 DQVVAVVNDDVILQSELEARINTITGRLRAQ-GTGLPPRDI----LEERVLEQLISESIQ 75 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + +A + N + F +L +EG+ +E + + Sbjct: 76 LQMADRAGMRISDNELNETLASI----AQRNNMTLAQFEQQLVQEGVTYREAREQIRNEM 131 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRS-----VDYIVLNNRHVPAIADPSN-- 210 + V +R ++ ++ + RS + +I++ + S Sbjct: 132 ITSRVQQRQVGNRVRVTDREVENYLAAMAGQGRSNAEYELAHILIEVNDFNDEEEVSAAR 191 Query: 211 AVLTQWFEKYKD--NYRAPEYKR-----------ISYILFDVHEKEKKIEISNDE----- 252 + Q E+ + ++R+ + + + + + E Sbjct: 192 EKVEQLREEIAEGRDFRSVAVAESDASNALDGGNMGWRAENQLPSLVADVVPDLETGTVS 251 Query: 253 -----------LQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADE----AFQSLKK 292 + + +K E V ++ + +A+ +Q + Sbjct: 252 PVLRNSSGFHLVMVMDRRGGDKAQFIEQSKVRHILVRTSETVSEAQAEATIRDLYQQIDN 311 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A E +LG S + ++ A G+ FG+ Sbjct: 312 GADFAVIAREHSDDPVSGSDGGNLGWVSPGQMV-PEFEQAMME-ADVGELKGPFRSQFGW 369 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 I V + + ++DI+ +R ++A + + Sbjct: 370 HILQVQDRR----------QQDISGDVRESEARQAIY 396 >gi|124486132|ref|YP_001030748.1| hypothetical protein Mlab_1314 [Methanocorpusculum labreanum Z] gi|124363673|gb|ABN07481.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanocorpusculum labreanum Z] Length = 93 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 ++ + +A E Q + G F +LA+ + S LG F K + Sbjct: 3 RVKASHILVKTEAQAKEIMQKISAGDDFAKLAKMYSQCPSGNAGGDLGYFGKGQMVKP-F 61 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 D+ F AK GD + FG+ I V++IK Sbjct: 62 EDACFK-AKAGDVVGPVKTQFGWHIIKVTDIK 92 >gi|88803462|ref|ZP_01118988.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P] gi|88781028|gb|EAR12207.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P] Length = 544 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 61/411 (14%), Positives = 137/411 (33%), Gaps = 65/411 (15%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI L + F+ F++ S T+V++ + F +++ L Sbjct: 3 KIVLSICFLIFVL------NLSSQNKKTLVTINNEITTVEDFKRIYEKNLD--------A 48 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 ++S+ A+SV KK L + + L + + Sbjct: 49 IDSKEAKSV---KKNLTLYIDYRLKVAEAYHLKL----DTLRSYQKEIKM---------- 91 Query: 135 DVFVSRLAREGINEKEYIDHYTKML---SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 + +L + + +I K + + +V + + + Y + + Sbjct: 92 --YREQLMAPYLQDTTFISDLVKEIYFRTTNEVKAKHILVRTSEDAVPRDTLIAYNKITA 149 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFE------KYKDNYRAPEYKRISYILFDVHEKEKK 245 + ++N A+A + ++ + K + + ++ DV K Sbjct: 150 IRNRIINGEDFEAVAVAVSEDVSAQDDPRSGRKGNKGDLGYFDAFKMVSSFEDVAYTTKI 209 Query: 246 IEIS---NDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFI 297 +S + K + S V ++ + + + E + +++ + F Sbjct: 210 GAVSHPFKTQFGFHILKVDDFRTSKGALEVAHILITDTTAVGKSKIAEVYAKIQENETFE 269 Query: 298 QLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA + S G F + D+ FSL K+GD + FG+ I + Sbjct: 270 KLAAQFSMDTSSKRNGGKLNKFGIGKMVKP-FEDAAFSLQKEGDVSKPFRTRFGWHIVKL 328 Query: 354 SNIKPSFTVSFQEVKKDIANQMRI--------TKASEKVKEDYKRLEEFLA 396 P SF E++ ++ ++++ T K+K Y +E +A Sbjct: 329 LAKYP--VKSFLELRAELTDKVKRSSRMQMSETAVINKLKASYSIIENEIA 377 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 41/202 (20%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------D 284 + IS+ ++ Y + + + ++ ++A Sbjct: 96 LMAPYLQDTTFISDL-VKEIY------FRTTNEVKAKHILVRTSEDAVPRDTLIAYNKIT 148 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSD------------ISLGSFSKEYIPDVSLADSIFSL 332 + G+ F +A + +S LG F + S D ++ Sbjct: 149 AIRNRIINGEDFEAVAVAVSEDVSAQDDPRSGRKGNKGDLGYFDAFKMV-SSFEDVAYT- 206 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G + FG+ I V + + S + + I + + K K+ E Y +++ Sbjct: 207 TKIGAVSHPFKTQFGFHILKVDDFRTSKG-ALEVAHILITDTTAVGK--SKIAEVYAKIQ 263 Query: 393 -----EFLALGTSMDEISRREK 409 E LA SMD S+R Sbjct: 264 ENETFEKLAAQFSMDTSSKRNG 285 >gi|118595140|ref|ZP_01552487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales bacterium HTCC2181] gi|118440918|gb|EAV47545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales bacterium HTCC2181] Length = 262 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 68/159 (42%), Gaps = 7/159 (4%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + Y L+ ++ +E+ Y + K + E + ++ ++ +A+ + L Sbjct: 95 ELIYTLYLQDYIINN-PVTEEEVATAYNQYKAAFNESEFK-ASHILLTSKNKAELIIKKL 152 Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G+ F LA+++ + + LG FSKE + D++ + F + F Sbjct: 153 DAGESFGVLAKKESEDNDTKNNNGDLGWFSKETMVQSIF-DAVKNTGSGEIFPKPVKTQF 211 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 G+ + V +++P +F + ++ I +++ K + + Sbjct: 212 GWHVIKVDDVRPLEVETFAQKEEFIKTELQKIKLKQHLS 250 >gi|302039584|ref|YP_003799906.1| putative peptidylprolyl isomerase [Candidatus Nitrospira defluvii] gi|300607648|emb|CBK43981.1| putative Peptidylprolyl isomerase [Candidatus Nitrospira defluvii] Length = 344 Score = 93.1 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 50/394 (12%), Positives = 120/394 (30%), Gaps = 86/394 (21%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +R A+ + L + F++ +S+A + V V + S E Sbjct: 30 VRSATGFTTTGALIFCLCLLFVL--ISNAEAAKLEDRIVAVVNSDLIMLSELKRDLLPEQ 87 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 + + R ++ + + ++ Q ++ G++ V + Sbjct: 88 DRLRKLYKGEDLERRLKTA--EAMGVTKMIERKLQLQAAKNKGVDVSDQEVVQAVEEMKK 145 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184 + + + L+ VV Sbjct: 146 QGEAIDSADPNT---------------ARSIREQLTLMRVVD------------------ 172 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 R V +++ +++ + +++++++D + PE ++S IL Sbjct: 173 -----REVRGLIM----------VADSEMKRYYQEHQDRFAYPEEYQLSQILIKP----- 212 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA--EE 302 +P+ + A+ +LK+G+ F LA Sbjct: 213 --------------------RTPDGLSAAH------GRAEALLATLKQGEPFEDLALRFS 246 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 G S ++ +L ++ S+ G T ++ + G I V + KP Sbjct: 247 DGADASRGGRLGLVRQGELIPALEQALTSV-DVGKITGIVETAEGLHIVRVDDKKPRQFR 305 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 F++VK +I + + K ++ + L+ Sbjct: 306 PFEQVKAEIQSLVFQQKTEDQYQIWMADLKNKAY 339 Score = 40.7 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Query: 370 DIANQMRITKASEKVKEDYKRLEEFLAL---GTSMDEISRREKIVSIDLPLVDFAGKDVK 426 ++ + + + + + R E LA G ++++ R D G + Sbjct: 204 QLSQILIKPRTPDGLSAAHGRAEALLATLKQGEPFEDLALRFSD-GADASRGGRLGLVRQ 262 Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486 G+ + A L + D V +G ++ V++ + P + R E+V ++ Sbjct: 263 GELIPA-------LEQALTSVDVGKITGIVETAEGLHI-VRVDDKKPRQFRPFEQVKAEI 314 Query: 487 KKDWKTVKTAEE 498 + KT ++ Sbjct: 315 QSLVFQQKTEDQ 326 >gi|319793857|ref|YP_004155497.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus EPS] gi|315596320|gb|ADU37386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus EPS] Length = 261 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 6/155 (3%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + YK+ + LFD K +S+ +++AEY+K E + ++ Sbjct: 85 DDYKNQLELARQAILIRALFD--NYRKTNPVSDADVKAEYDKFVAANGGKEYK-ARHILV 141 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334 + +A + LKKG KF +A++Q K + G P ++++ L K Sbjct: 142 ETEDQAKKIMADLKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFSEAMIKLKK 201 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 I FGY I V +I+ + +EVK Sbjct: 202 GETTPAPIKTQFGYHIIRVDDIRQAQLPKLEEVKP 236 >gi|284122311|ref|ZP_06386843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Poribacteria sp. WGA-A3] gi|283829362|gb|EFC33756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Poribacteria sp. WGA-A3] Length = 186 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 14/161 (8%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQ 298 +S ++++A Y++ + + SP + Q++ + A+ L +G+ F Q Sbjct: 19 VSPEDIRAYYKEQQPLFTSPHAHHIRQILLLPKLGENMETLKARAEILMSQLDEGRTFEQ 78 Query: 299 LAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LAE + +S+ LG +K + L D++ ++ G+ TP+I G I + Sbjct: 79 LAELFSDGSESVMGGDLGFVTKNELL-PPLRDALHKIS-PGEVTPLIETEIGIHILRLEE 136 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 +P T F++VK I +++ K + L++ Sbjct: 137 SRPGVTEPFEKVKDAIESRLYQEKLQKSHDAWMSSLKDKAY 177 >gi|261886000|ref|ZP_06010039.1| foldase protein PrsA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 268 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 11/151 (7%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------ 292 + ++ I++ + + YE+NK+K+ P + ++ +KEA + +SL Sbjct: 99 MKKQFDAIKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAAL 158 Query: 293 GKKFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 KKF ++A+E+ +++ LG F + + S + + F L K + FGY Sbjct: 159 DKKFSEIAKEKSIDKSSAVNGGELGWFGESQMV-ASFSKAAFGLKKGEITNKPVKSEFGY 217 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + ++K V F + K +I NQM+ + Sbjct: 218 HVILKEDMKDKSAVGFDKAKANIENQMKSEE 248 >gi|319639633|ref|ZP_07994380.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102] gi|317399204|gb|EFV79878.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102] Length = 329 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 33/356 (9%), Positives = 97/356 (27%), Gaps = 90/356 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V + + + Q + + + + L +++L +++ + Sbjct: 52 SDGIAAVVDNEVITHRQVEQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + IA +P + Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPS-----------------------AAVRQD 141 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + +V + + + S++ + ++ E Sbjct: 142 IADSIIVEKVRQ-----------------------------QAIMQNSRVSDSEVARYIE 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K I + + +Y + Sbjct: 173 QAKQQ---------------------GITLPEADPVRQYHAQHILIKADNDNAA----VG 207 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + + + + G F LA + + S LG F+ + +++ L K Sbjct: 208 AESTIRKIYSQARSGADFGGLARQYSQDSSAGNGGDLGWFADGMMV-APFEEAVHKL-KP 265 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + + FG+ I +++++ + T + + + + KA + + L Sbjct: 266 GQISAPVRTQFGWHIIKLNDVREAGTPE-ERQQNAVRQYLSQQKAQQATTNLLREL 320 >gi|229592952|ref|YP_002875071.1| putative chaperone [Pseudomonas fluorescens SBW25] gi|229364818|emb|CAY52844.1| putative chaperone [Pseudomonas fluorescens SBW25] Length = 444 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 50/413 (12%), Positives = 133/413 (32%), Gaps = 64/413 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S K+ I+++ G V + LD+++L+ L+ Sbjct: 32 DKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPPTSV-----LDQQVLERLIVENLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S D F + LA +G++ ++ D + + Sbjct: 87 LQIGDRSGIRISDEELNQAVGTI----AQRNNMSIDQFRAALAHDGLSYEDARDQIRREM 142 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIA-DPSN 210 + V ++ S + + E + ++ + + + Sbjct: 143 IISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPDSANSEQLNAAA 202 Query: 211 AVLTQWFEKYKD--NYR-----------APEYKRISYILFDVHEKEKKIEISNDE----- 252 A +++ K ++ A E + + E+S E Sbjct: 203 AKTQAIYDRLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLPPPFDRELSAMEVGGIT 262 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + + V ++ ++ A + + ++ G Sbjct: 263 QPARTPGGFIILKLLEKRGGETSLKDEVHVRHILVKPSEIRTEAQTKELAQKIYDRIESG 322 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA+ + G +L+ L + + + + +G + +G+ Sbjct: 323 EDFATLAKSFSEDPGSALNGGDLNWIDPKALV-PEFQQ-VMADTPQGVLSKPFKTQYGWH 380 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSM 401 + V + + + ++ A N +R K E+++ +++ + + + Sbjct: 381 VLEVLGRRATDNT--NQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVENKL 431 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 105/341 (30%), Gaps = 42/341 (12%) Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L LV GA L +V + + + ++ +V + R G Sbjct: 9 LRPLVLGALLLGTASAHAAVQQLDKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPP 68 Query: 150 E--YIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 + L ++ G+R S+ L+QA + ++ Sbjct: 69 TSVLDQQVLERLIVENLQLQIGDRSGIRISDEELNQAVGTIAQRNNMSIDQFRAALAHDG 128 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 +E +D R + + +++++S E++ + K Sbjct: 129 LS---------YEDARDQIR----REMIISRVRQRRVAERVQVSEQEVKNFLASDLGKMQ 175 Query: 266 SPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGK---SLSDI 310 E + ++ P A + LK G F Q+A Q +L Sbjct: 176 LSEELHLANILIPTPDSANSEQLNAAAAKTQAIYDRLKAGADFAQMAIAQSGSDNALEGG 235 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK-- 368 +G +P + ++ + G T G++I + + T EV Sbjct: 236 DMGWRKAAQLP-PPFDRELSAM-EVGGITQPARTPGGFIILKLLEKRGGETSLKDEVHVR 293 Query: 369 ------KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +I + + + ++K+ + + E+F L S E Sbjct: 294 HILVKPSEIRTEAQTKELAQKIYDRIESGEDFATLAKSFSE 334 >gi|213967673|ref|ZP_03395820.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato T1] gi|213927449|gb|EEB60997.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato T1] Length = 428 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 52/423 (12%), Positives = 137/423 (32%), Gaps = 66/423 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V + L ++LD L+ Sbjct: 19 DSVVAIVDNDVIMKSQMGQRVR-EVQQTIAKRGSGVPP----AADLQPQVLDRLILENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ + + + Sbjct: 74 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 129 Query: 160 SRTDVVGM-FVGGMRPSNLLL------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V ++ S + DQ K E + I++ + A Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSDAIQAAA 189 Query: 213 LTQ--WFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + I + Sbjct: 190 VKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPIGDVT 249 Query: 253 ----------LQAEYEKNKEKYFSP--EIRTVEQLVF---------PNQKEADEAFQSLK 291 + EK + + + V ++ + A + ++ ++ Sbjct: 250 PPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIE 309 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+ + G +L+ L + D + S +G+ + ++G Sbjct: 310 NGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRD-VMSSTPQGELSKPFKTAYG 367 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + + V + + + + A + +R K E+++ +++ + + + ++ Sbjct: 368 WHVLEVLGRRATDATG--QARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGATQ 425 Query: 407 REK 409 + Sbjct: 426 AAQ 428 >gi|254429963|ref|ZP_05043670.1| SurA N-terminal domain family [Alcanivorax sp. DG881] gi|196196132|gb|EDX91091.1| SurA N-terminal domain family [Alcanivorax sp. DG881] Length = 442 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 64/475 (13%), Positives = 145/475 (30%), Gaps = 86/475 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + + Q+ G + + +++LD +V Sbjct: 42 DRIVAVVNDGAIMASELDERI-NTIALQFQEKGQQLPPPAV----MREQVLDRMVLERLQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G++ D + +A + N S + F + L ++G + ++ + + Sbjct: 97 LQLAERGGIKVDDASLNQALAGI----ARQNGMSLEDFAAALRQDGYDWPQF----REQI 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 V+ + RSV + ++ + ++ Sbjct: 149 REDMVISRL-------------------QQRSV----------ASRIQVTDREVDRFLSS 179 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 E + +IL V + +++ Sbjct: 180 ELGKQMFQEDFHLGHILVRVPAEASPEDVTQA---------------------------- 211 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + +A+ + L G F QLA + K+L LGS P + ++I +KG Sbjct: 212 RSKAESIVKKLNDGGDFQQLAVAESDGPKALEGGDLGSRPAAQWPTLFAENAIN--LQKG 269 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTV--SFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + + G+ I + + K + +V+ + +T A + K+ + +E Sbjct: 270 EISEPLRSGAGFHILKMIDRKGGSEKVVTQYQVRHVLIKTDALTSAEQAHKQAIRLHDEI 329 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 A + + G KG+ V F + P+ + Sbjct: 330 AAGERQFSDTAAEFSDDPGSARSGGELGWVNKGEMVPE--------FEDMMLNTPVGELS 381 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 V + ++++ + A D E + + + EE+ + + E Sbjct: 382 PVFESQFGWHFLRVDDVRDA-DMSAEFRRMQATQALQKRRFEEELETWVQEKRSE 435 >gi|192361586|ref|YP_001982980.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus Ueda107] gi|190687751|gb|ACE85429.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus Ueda107] Length = 270 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 65/161 (40%), Gaps = 19/161 (11%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEAD-----EAFQSLKKGKK 295 + + ++ Y +++ +Y S ++ +++A E + L+KG+ Sbjct: 108 VDDAAVRNYYAEHQGQYESS-RVHAAHILVRIDPTMGETERQAKLSTAHEIYSRLQKGED 166 Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+ + LG ++ + D + +FS+ K G+ + + FG+ + Sbjct: 167 FADLAKSYSEDKVSGEKGGDLGWLAEGAV-DPEFSKKLFSM-KPGEISEPLITPFGFHVV 224 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + S + V+ +I Q+R + + + ++ Sbjct: 225 KMLEGPQTIKRSLESVEGEIRYQLRNQAKATETERLVNTVK 265 >gi|271502081|ref|YP_003335107.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586] gi|270345636|gb|ACZ78401.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586] Length = 430 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 55/402 (13%), Positives = 128/402 (31%), Gaps = 63/402 (15%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 + + +V V S INS Q + + +Q+ G + L +IL+ L+ + Sbjct: 26 NKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLP----DDATLRHQILERLIMDNIIM 81 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + +G++ ++ I N S D SRLA EG++ Y K + Sbjct: 82 QMAQKMGVQVTDEQLDRSITNIAA----QNHMSLDQLRSRLAAEGVSFDTYRSQIRKDMM 137 Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 DV + +D + + + + L+ +P +P+ + + E Sbjct: 138 IADVRNSEVRRRVTVLPQEVDALAQQLASQGANGPEVNLSQILIPLPENPTQDQVDK-AE 196 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKNKEKYFSPE-- 268 + + + + + EL + + + + Sbjct: 197 SLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERLANPQKGQII 256 Query: 269 ---------------------------IRTVEQLVFPN---------QKEADEAFQSLKK 292 ++ + + +E ++ Sbjct: 257 GPIRSGVGFHILRVNDTRGGSQAVSVTEVHARHILLTTSVVMNDAQAKAKLEEVASQIRS 316 Query: 293 GK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 GK F A++ + + G ++ + D + D++ L KKG+ + +H SFG+ Sbjct: 317 GKLSFAAAAKQLSQDPGSANQGGDLGWASPDMYDPAFRDALMDL-KKGEISAPVHSSFGW 375 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + + + + K + K +E+ + + Sbjct: 376 HLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQE 416 >gi|170699177|ref|ZP_02890230.1| SurA domain [Burkholderia ambifaria IOP40-10] gi|170135902|gb|EDT04177.1| SurA domain [Burkholderia ambifaria IOP40-10] Length = 452 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 50/410 (12%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + + + +RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209 + + V G + S+ + + + + + I A + + Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVA 210 Query: 210 NAVLTQWF-----------------EKYKDN------YRAP-----EYKRISYILFDVHE 241 E ++AP E + L Sbjct: 211 QKKAEALLQQATFGADFEKLAKNNSEANDAKKGGDLGFKAPGALPPEVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + S V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVIDRRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|89067389|ref|ZP_01154902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola granulosus HTCC2516] gi|89046958|gb|EAR53012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola granulosus HTCC2516] Length = 280 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 63/165 (38%), Gaps = 6/165 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQ 303 + +S + LQA YE ++ ++EA + + G F +LA E Sbjct: 109 EEAVSEEALQAAYEARFADAEPQTEYNASHILVETEEEAVALTEQARAEGADFAELAREN 168 Query: 304 GKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S LG F + + D++ +L + GD + + FG+ + ++ + S Sbjct: 169 STGPSGPAGGELGWFGEGMMV-QEFYDAVVAL-EPGDVSEPVQTQFGWHVIKLNETRLSE 226 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 + ++ ++ ++++ + + E + + D + Sbjct: 227 VPPLESLRGELTSELQQQAVEDALAELEAGADVTRPEQGAFDPAA 271 >gi|189485156|ref|YP_001956097.1| rotamase surA-like protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|189485167|ref|YP_001956108.1| rotamase surA-like protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287115|dbj|BAG13636.1| rotamase surA-like protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287126|dbj|BAG13647.1| rotamase surA-like protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 351 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 53/373 (14%), Positives = 116/373 (31%), Gaps = 62/373 (16%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 K F VL V F I G+ + T+ V + + F + + + + Sbjct: 1 MKKFFSVLAVTFFIVGVGSIFAAPKKVDQTLAIVNGKPI----FESEVNKVFNNLKSDML 56 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ + L I+ + V I K++ Sbjct: 57 ASEQWSEQKINELKNRILERQIDSILLKNEIKKQKILVSRKEVLEYIKEL----KKNHAI 112 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + L+++ + K+ ++++ ++G + Sbjct: 113 DEE-----LSKQNLTYKDLEKSVSEIIRFMKLLGKILD---------------------- 145 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEIS 249 + A + +++K + + V ++ KK+ Sbjct: 146 ----------VNAEKITEAEIKSFYDKVIIKMKGGNPGLSHDKDCLAASVADELKKVFSE 195 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309 N ++ + KN + E + V+ V +KE K F ++A + + L Sbjct: 196 NVRIKQIFIKNPKGTQDAETQVVQSKVETVKKELQV--------KSFAEVARKYSEDLIS 247 Query: 310 ----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 LG F + + L ++FS+ I GY + P+ + F Sbjct: 248 KSRNGDLGIFVVKGDLPLVLEKAVFSMKVGDYTKEPIKTDIGYYFIKLEEKLPNRKIVFD 307 Query: 366 -EVKKDIANQMRI 377 +VK I +++ Sbjct: 308 GKVKDYINSRLLQ 320 >gi|283850614|ref|ZP_06367901.1| SurA domain protein [Desulfovibrio sp. FW1012B] gi|283573857|gb|EFC21830.1| SurA domain protein [Desulfovibrio sp. FW1012B] Length = 330 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 47/368 (12%), Positives = 106/368 (28%), Gaps = 91/368 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + L G + + ++ L +++L+++++ + Sbjct: 28 DKVVAVVNGKLITMFDVNARLADLLQRTQ---GVSMRPDDPQAAELRRQVLESMINDILI 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q + + + +I K N + FV+ L +EG+ K++ + Sbjct: 85 EQEAARLKVSISETELDSQIDEI----KKKNNLTQQQFVAELNKEGMTLKDFRERMRLDS 140 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++G V ++ + ++EK Sbjct: 141 VKKRLLGFM---------------------------------VHRKVLVTDDEIRDYYEK 167 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K P K I T+ ++ Sbjct: 168 NKGA--LPTAKSILGPKVSG-------------------------------TIGFIMVAT 194 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+AD+ + G KF A++ LG + + L D++ S+ Sbjct: 195 KKQADDLRAQITSGSLKFSDAAKKYSIGPGRDQGGDLGDVQAKDLA-PPLRDALKSVP-A 252 Query: 336 GDFTPVIHGSFGYVIAHV------------SNIKPSFTVSFQEVKKDIANQMRITKASEK 383 G +P + V+ + P+ SF+ + I + K + Sbjct: 253 GQVSPPVMLDGKAVLLVLRTGAASTPAPAAPAPTPAGGPSFEGARDQIQEMLYKQKFDKL 312 Query: 384 VKEDYKRL 391 +E L Sbjct: 313 FQEYIDNL 320 >gi|320450789|ref|YP_004202885.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01] gi|320150959|gb|ADW22337.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01] Length = 307 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 6/148 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++++S L+A + +Y P + ++ P + A E L KG+ F Q+ Sbjct: 146 AHYRTELKVSPAALKALWLL-SPEYRHPALYCARHILVPTLEAAKEVLARLAKGEAFAQV 204 Query: 300 AEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A E + G E + ++ +L K G+ +P + FG+ + + + Sbjct: 205 AREVSQDPGSKEAGGDLGCEPEGTYIPAFEKALLAL-KPGEVSPPVGTEFGFHVILLERL 263 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKV 384 P +EV +++A ++ KA E++ Sbjct: 264 VPPGRYPLEEVAEELAQGVK-DKAWERL 290 >gi|170691413|ref|ZP_02882578.1| SurA domain [Burkholderia graminis C4D1M] gi|170143618|gb|EDT11781.1| SurA domain [Burkholderia graminis C4D1M] Length = 453 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 54/413 (13%), Positives = 127/413 (30%), Gaps = 74/413 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + ++Q+ + +++ L +++L+ +V Sbjct: 42 DTIAAVVNNGVITRRELEERVSLITRRLNQQNAPIPPADQ-----LRQQVLNQMVLERIQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ D V + R + N S DV+ +R+ +G+ + L Sbjct: 97 LQKAKEDGINIDDAAVQKTLERL----AQANNLSLDVYRARIEAQGVPWTTFTSDARTEL 152 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENR----------SVDYIVLNNRHVPAIADP 208 + + + V + S+ + + R +++I+L D Sbjct: 153 TLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGATSDLHLEHILLKAPLNAPQPDI 209 Query: 209 SNAVLTQ------------WFEKYKDNYRAP------------------EYKRISYILFD 238 A + + K N +AP E+ + + L Sbjct: 210 EAAQKKAEALLAEAKGGANFEKLAKSNSQAPDASKGGDMGYAAPSKLPPEFVKAASALRP 269 Query: 239 VHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEA 283 + I S+ E+ ++ + S + V ++ +++ Sbjct: 270 GQVNPEVIRTSDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQARQKL 329 Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 E + + G F + A + G S LG S ++ SL + G + Sbjct: 330 LEIRKEIAAGGDFSKFASTYSQDGSSSQGGDLGWISPGETV-PEFERAMNSL-QDGQISD 387 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + +GY + V + + S + + KA + + + L + Sbjct: 388 PVRSEYGYHLIQVLERREAQG-SIAQQMDLARQAIGQRKAEQAYADWLRELRD 439 >gi|114570817|ref|YP_757497.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris MCS10] gi|114341279|gb|ABI66559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris MCS10] Length = 317 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 6/155 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EE 302 ++++ +Q YE+ E ++ Q+EA + +G+ F +LA E+ Sbjct: 134 AVTDETIQRIYEEQVRLIPLGEEVRARHILVQTQEEAVAIKALIDQGRDFAELAVAMSED 193 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 Q L LG FS+E I + F+ +G + FG+ + V + + Sbjct: 194 QATRLEGGDLGYFSREGIL-PAFGAVAFA-TPEGAVSEPFRTEFGWHLLTVVDRRRQPPP 251 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 S + ++ +IA + + + E A Sbjct: 252 SLESLRPNIARFYTFDQLEALIDGLRDQAEIERAD 286 >gi|323524758|ref|YP_004226911.1| SurA domain-containing protein [Burkholderia sp. CCGE1001] gi|323381760|gb|ADX53851.1| SurA domain protein [Burkholderia sp. CCGE1001] Length = 468 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 47/413 (11%), Positives = 123/413 (29%), Gaps = 74/413 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + ++Q+ + +++ L +++L+ +V Sbjct: 57 DTIAAVVNNGVITRRELDERVNLITRRLNQQNAPIPPADQ-----LRQQVLNQMVLERIQ 111 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ D V + R + N S DV+ +R+ +G+ + L Sbjct: 112 LQKAKEDGINVDDAAVQKTLERL----AQANNLSLDVYRARIEAQGVPWATFTSDARTEL 167 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD------------YIVLNNRHVPAIA 206 + + + V + S+ + + R + ++ Sbjct: 168 TLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGATSDLHMEHIFLKAPLNAPQTDI 224 Query: 207 DPSNAVLTQWFEKYK--DNY--------------------------RAPEYKRISYILFD 238 + + + K N+ PE+ + + L Sbjct: 225 EAAQKKAEALLAEAKGGANFGKLAKSNSQAPDAAKGGDMGYAAPSKLPPEFVKAASALRP 284 Query: 239 VHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEA 283 + I ++ E+ ++ + S + V ++ +++ Sbjct: 285 GEVNPEVIRTNDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQARQKL 344 Query: 284 DEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 E + ++ G F + A + G S LG S ++ +L + G + Sbjct: 345 LEIKKEIQAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFERAMNTL-QDGQISD 402 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + +GY + V + + S + + KA + + + L + Sbjct: 403 PVRSEYGYHLIQVLERREAQG-SIAQQMDLARQAIGQRKAEQAYADWLRELRD 454 >gi|160896759|ref|YP_001562341.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] gi|160362343|gb|ABX33956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] Length = 311 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 67/165 (40%), Gaps = 11/165 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGK 294 + + + + Y+ + E++ E V ++ + +A++ L+ G Sbjct: 128 ADNTPSAAAAEGQARNIYKAHPERFAVEEQVHVRHILIAGTDDAARAQAEKLVAELRGGA 187 Query: 295 KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F LA+E +G + LG F K+ + + F+L KK + + + FG+ + Sbjct: 188 DFAALAKERSADKGSAARGGDLGFFGKDKMV-PEFEQAAFAL-KKNEISGAVQSKFGFHV 245 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + + KP+ SF EV++ + ++ +E + + Sbjct: 246 LQLLDRKPAGQQSFSEVREALVKEVIEQAQAEGRVAAANAIRKEF 290 >gi|300114915|ref|YP_003761490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus watsonii C-113] gi|299540852|gb|ADJ29169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus watsonii C-113] Length = 304 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 14/158 (8%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQ-SLKKGKKFIQLA 300 + Y+ N EKY PE V ++ ++ A++ Q +L K F +LA Sbjct: 128 EALARERYQANPEKYQQPERVKVSHILIKPEERSEEEARELAEQVRQLALTDEKPFSELA 187 Query: 301 EEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + + S LG +K + S ++ F+L + G +PV+ FG+ I + Sbjct: 188 LQYSEDPSLEKNKGDLGFIAKG-MTTQSFEEAAFALEQPGAISPVVKSRFGFHIIRLEER 246 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + T SF EVK+ + ++ T ++ V+ ++ Sbjct: 247 QAPKTKSFAEVKESLVEDIKATHLNQVVQTHLNQIRNA 284 >gi|172061669|ref|YP_001809321.1| SurA domain-containing protein [Burkholderia ambifaria MC40-6] gi|171994186|gb|ACB65105.1| SurA domain protein [Burkholderia ambifaria MC40-6] Length = 452 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + + + +RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209 + + V G + S+ + + + + + I A + + Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVA 210 Query: 210 NAVLTQWFEKYKDN-----------------------YRAP-----EYKRISYILFDVHE 241 ++ ++AP E + L Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + S V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVIDRRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|149202954|ref|ZP_01879925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. TM1035] gi|149143500|gb|EDM31536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. TM1035] Length = 283 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 6/176 (3%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E +R + + DV E+ +++ + LQA Y+ ++ ++ A Sbjct: 96 ENERRAVLAADVAEEVVNADLTEERLQAAYDAQYAGAEDETEYKAAHILVETEEAAQNLV 155 Query: 288 QSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L+ G F LA+E S LG F + + + G + I Sbjct: 156 IELEGGANFAALAQEHSIGPSGPSGGDLGWFGDGVMVPEFF--AAVAALDVGAVSAPIQT 213 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 FG+ + ++ + + V+ ++ N +R A + + E + T+ Sbjct: 214 QFGWHVIQLNETRIKERPTLDGVRDELTNTLRQE-AFDAFIAAREAATEVIRTDTT 268 Score = 37.3 bits (85), Expect = 7.6, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 66/197 (33%), Gaps = 9/197 (4%) Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 K V +++LL + D + + + + + E + D E + Sbjct: 67 KGVLDQLIQQELLSQAHEGDLSRAAALQLENERRAVLAADVAEEVVNADLTEERLQAAYD 126 Query: 488 KDWKTVKTAEEVSS--------KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 + + E + +A Q ++ + G NF + + + + Sbjct: 127 AQYAGAEDETEYKAAHILVETEEAAQNLVIELEGGANFAALAQEHSIGPSGPSGGDLGWF 186 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599 + + + V + V V PI+ + V ++ +++ D LT + Sbjct: 187 GDGVMVPEFFAAVAALDVGAV-SAPIQTQFGWHVIQLNETRIKERPTLDGVRDELTNTLR 245 Query: 600 KDLLDSVIAYLKSQYSV 616 ++ D+ IA ++ V Sbjct: 246 QEAFDAFIAAREAATEV 262 >gi|182417449|ref|ZP_02948776.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521] gi|237665664|ref|ZP_04525652.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378618|gb|EDT76145.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521] gi|237658611|gb|EEP56163.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 252 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 R E ++ + + K I+ +E Y NKEK+ E+ +V+ ++ +Q+EA Sbjct: 71 RIEEARKDILTQMGISKAAGKESINENEALDYYNSNKEKFIIGEMVSVKHILVESQEEAY 130 Query: 285 EAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 ++ + F A + +++ SLG+F + + S ++ F+ AK T Sbjct: 131 NVKNEIENNQISFSDAALKYSMCPSNMNGGSLGTFGRGKLT-ASFEEAAFN-AKINILTD 188 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + FG+ I V + + + F +VK++I ++ Sbjct: 189 PVETEFGFHIILVEDFRDEYIKDFDDVKEEIMLHLKKK 226 >gi|227327727|ref|ZP_03831751.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 431 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 64/398 (16%), Positives = 129/398 (32%), Gaps = 65/398 (16%) Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 NS Q + + +Q+ G + L +I D L+ + Q + +G++ ++ Sbjct: 43 NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLDQ 98 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGM 172 I N+ S D S+LA EG+N Y + K + +V Sbjct: 99 AITNIAA----QNRMSLDQLKSQLAYEGLNYSTYRNQIRKEMLISEVRNNEVRRRITVLP 154 Query: 173 RPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEY 229 + + L Q EN ++ I++ P A L K + Sbjct: 155 QEVDTLAKQIATQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQINEGADFGK 214 Query: 230 KRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIR------------------ 270 I+Y K ++ E+ + + + ++ Sbjct: 215 LAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR 274 Query: 271 -----------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGK 305 ++ Q + E Q +K G F L+++ G Sbjct: 275 GGNKSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLLSQDPGS 334 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-- 363 + LG S + + D + D++ L KKG+ + +H SFG+ + + + + Sbjct: 335 ANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPVHSSFGWHLIQLLDTRQVDKTDAA 392 Query: 364 -FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 ++ + I N+ +A ++E + G S Sbjct: 393 QKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVKVINGAS 430 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 111/329 (33%), Gaps = 34/329 (10%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 S L +N ++ + + + N++L A++ + + + + Sbjct: 43 NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLDQ 98 Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 ++ A S L + YR K + +E ++I + E+ Sbjct: 99 AITNIAAQNRMSLDQLKSQLAYEGLNYSTYRNQIRKEMLISEVRNNEVRRRITVLPQEVD 158 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302 ++ + + + ++ P Q++ DEA + + +G F +LA Sbjct: 159 TLAKQIATQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQINEGADFGKLAIT 218 Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + G + + +L + A+KG I G+ I V++I+ Sbjct: 219 YSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277 Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 S + + + ++A K+ E ++++ G++ + + + K++S D Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKN----GST--DFASQAKLLSQD 331 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + G P L ++ Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360 >gi|302338344|ref|YP_003803550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] gi|301635529|gb|ADK80956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta smaragdinae DSM 11293] Length = 511 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 66/507 (13%), Positives = 159/507 (31%), Gaps = 95/507 (18%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 LV++ V F+ S GS S + + + N ++ M++++ + Sbjct: 35 ILVLIVVTFVGAPAISHFGSQRGSIVFGSWNGEPIEYRP-DNYLSRQRDMVAKRYQAMFQ 93 Query: 77 SERARSVGLDKKILD------NL-VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + +D ++ L V + + + + GL+ RV + + ++ Sbjct: 94 QSQGQD-NIDWQLFQVWNGAFELTVIHSAIMEEAQKSGLQVSDERVDRALTYYEGY-WEN 151 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 KFS + + + + E + + Y Y + L V S+ Sbjct: 152 GKFSPEAYRNTSSSEKFSVRNY---YHESLIHQQWVSDVF-STHSSSAEKAFLLSLASPE 207 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 R+ ++ + PA + ++ + D + + RIS Sbjct: 208 RNFRFVNWDLNSYPA------EKVAEYGRQTGDLFAEGSFSRIS---------------- 245 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGKSL- 307 + ++K A+ + L++ F +LA + Sbjct: 246 --------------------------LKDDKKSAEAVLKQLREETSTFEELATAHSTDIY 279 Query: 308 --SDISLGSFSK----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 +G + I + D +FSLA G+ + ++ +G+ I + P Sbjct: 280 ADKGGEMGYVMRYALQSDISNDKDLDEVFSLA-PGEASGLVETPYGWAIYRSNG--PIRD 336 Query: 362 VSF--QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 F E + + M + V++ + L + S + + L D Sbjct: 337 ADFTNDETIDKVRSYMLVND-RGIVEDYFLDLGKTFGESAEKSSFSETSDTMGLTEHLTD 395 Query: 420 FAGKDV-------------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + + +I +++L +F + P + + ++ Sbjct: 396 YFPINFGSVGFLKVIRTLDNSNYLQSIGSNDRILKLLFSLE-PEGVSEPQVVGNSVIVFQ 454 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTV 493 I E + V + + +++V Sbjct: 455 MIDERDAPQT-----VKDTIDQRYRSV 476 >gi|329767659|ref|ZP_08259179.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341] gi|328839086|gb|EGF88672.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341] Length = 312 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 97/297 (32%), Gaps = 87/297 (29%) Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 E + L K ++ LD++ I + ++ + D F Sbjct: 45 ESIGASQLSKTATSMMIQKVLLDKYKNKIDQKTIDEQLQKA-------QEQYGG--KDKF 95 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 L ++G +Y D ++T ++ + G Sbjct: 96 EQLLKQQGFTLDKYKDGLKVKAAQTLLINDYAGT-------------------------- 129 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 ++ L + +EK K Y +++IL V + +S++E Sbjct: 130 -----------NDDKLKESYEKNKHQY------HLAHILVSVKSESNPNGLSDEE----- 167 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313 +K+A+E + LK G F LA+E + LG Sbjct: 168 ---------------------AKKKAEEVLKKLKDGGDFATLAKENSNDTANASNGGDLG 206 Query: 314 SFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 SKE D+ ++L+K + V+ SFGY I V + K S SF E+K Sbjct: 207 WSSKEDNSFVKEFKDAAYALSKD-KTSDVVKTSFGYHIIKVLDEKDS---SFDELKP 259 >gi|256828792|ref|YP_003157520.1| SurA domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577968|gb|ACU89104.1| SurA domain protein [Desulfomicrobium baculatum DSM 4028] Length = 305 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 41/369 (11%), Positives = 109/369 (29%), Gaps = 87/369 (23%) Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82 + F++ GL A V V V + + F + +G + A + Sbjct: 14 LFFVLAGLGQAAQLV--DRIVAVVNGEIITFQDLQQQIRLSVGQ---------TPDPATA 62 Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 + ++LD ++ L Q + + +E V EI + + S + F L Sbjct: 63 EKIAPQVLDGMIDDVILRQEAQRLKIEVSDSEVDNEIRQFKA----RRRLSEEDFERTLR 118 Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 +G+ +++ + + +++ ++G V Sbjct: 119 LQGLTPEQFKERSREDITKHKMLGYM---------------------------------V 145 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 + + + E+ + + ++ + + + ++ Sbjct: 146 RRKVVVTQEEIDAYMEQNRSELTTERIVDVQMLVL----------VDEERANSLWKS--- 192 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 + + +EA + G K + +S L ++ + + Sbjct: 193 -------------LSEGEVSLEEAVERYSIGPKAENGVM---RDVSWRELAEPWRDGLRN 236 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 +S G+ + +VI + + + V++++ + K E Sbjct: 237 LSA----------GELSKPFLVQDKWVILKLLDRRDGVRQEDAAVEEEVREAIMRPKLEE 286 Query: 383 KVKEDYKRL 391 + KE L Sbjct: 287 RFKEYMNGL 295 >gi|269837477|ref|YP_003319705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter thermophilus DSM 20745] gi|269786740|gb|ACZ38883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter thermophilus DSM 20745] Length = 473 Score = 92.4 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 44/388 (11%), Positives = 111/388 (28%), Gaps = 49/388 (12%) Query: 40 SSTVVSVGRQKVPFSSF----INSWKQELGMISQKIGFVVNSERARSVGLDKKI------ 89 + T+ SV ++ + + ++ Q F + + L ++ Sbjct: 42 NQTLASVNGVEIKRADYWKMRKLELLNQIQQYVQIAQFSQGEQAVQYQQLAEQAQARLRT 101 Query: 90 ----------LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD---- 135 + +V + Q +E +GL V F + S Sbjct: 102 VESDPVESTTVSQMVDDQVVLQRLETLGLSVTDADVEQT---MEQFFSPEPSASPTPTLG 158 Query: 136 ------VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 + + A + + + ++ +++ E Sbjct: 159 VDPTAAAWATATAEAQVTPTPESTPEATPEATEEAESATPAASPTADGEDEESSAASPEA 218 Query: 190 RSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 P S + ++ + + + + + + Sbjct: 219 AEDATPEATPEGTPEPTPTLSPDQVQA---TATATFQQYKRNVLDEAGMSEEDFRRLVVL 275 Query: 249 SNDELQAE-YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306 Q Y ++ E ++ + A + L++G F +LA+EQ Sbjct: 276 PEAARQKVVYALQEKIPTRAEQVHAAHILVATEDAAKAIEEQLRQGADFAELAKEQSADS 335 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 ++ LG F + + + + FSL + G+ + + FG+ I V + V Sbjct: 336 ATAVNGGDLGWFPRGLMVEP-FEEVAFSL-EPGEISAPVQTQFGWHIITVFEKEADRPVD 393 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 + + +R + S+ ++E + Sbjct: 394 VETL-----QTLRNQQFSKWLEEQRAAV 416 >gi|171317315|ref|ZP_02906511.1| SurA domain [Burkholderia ambifaria MEX-5] gi|171097514|gb|EDT42352.1| SurA domain [Burkholderia ambifaria MEX-5] Length = 452 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + + + +RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209 + + V G + S+ + + + + + I A + + Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVA 210 Query: 210 NAVLTQWFEKYKDN-----------------------YRAP-----EYKRISYILFDVHE 241 ++ ++AP E + L Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + S V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + + S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVIDRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|238786686|ref|ZP_04630487.1| Chaperone surA [Yersinia frederiksenii ATCC 33641] gi|238725054|gb|EEQ16693.1| Chaperone surA [Yersinia frederiksenii ATCC 33641] Length = 434 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 60/404 (14%), Positives = 128/404 (31%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L ++L+ L+ L Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDGTLRHQVLERLIMDNIL 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + D SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITVSDEALDKAIADIAA----QNRMTPDQMRSRLAADGLNYNTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E + + + + + EL + + + + + Sbjct: 196 EDLANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEIHARHILLKPSPVMTDEQARAKLSAAAADIK 315 Query: 292 KGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKSSFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDAVMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 374 GWHLIQVIDNR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 >gi|312963417|ref|ZP_07777899.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens WH6] gi|311282223|gb|EFQ60822.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens WH6] Length = 444 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/413 (12%), Positives = 134/413 (32%), Gaps = 64/413 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S K+ I+++ G V + LD+++L+ L+ Sbjct: 32 DKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPPTSV-----LDQQVLERLIVENLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + + + N S D F + LA +G++ ++ D + + Sbjct: 87 LQIGERSGIRISDEELNQAVGTI----AQRNNMSIDQFRAALAHDGLSYEDARDQIRREM 142 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIA-DPSN 210 + V ++ S + + E + ++ + + + Sbjct: 143 IISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPDSANSEQLNAAA 202 Query: 211 AVLTQWFEKYKD--NYR-----------APEYKRISYILFDVHEKEKKIEISNDE----- 252 A +E+ K ++ A E + + E+S E Sbjct: 203 AKTQAIYERLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLPPPFDRELSAMEVGGIT 262 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + E+ + + V ++ ++ A + + ++ G Sbjct: 263 QPARTPGGFIILKLLERRGGETSLKDEVHVRHILVKPSEIRSEAQTKELAQKIYDRIQSG 322 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA+ + G +L+ L + + + + +G + +G+ Sbjct: 323 EDFATLAKSFSEDPGSALNGGDLNWIDPKALV-PEFQQ-VMADTPQGVLSKPFKTQYGWH 380 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSM 401 + V + + S + ++ A + +R K E+++ +++ + + + Sbjct: 381 VLEVLGRRATDNTS--QAREQQALSVLRNRKYDEELQTWLRQIRDEAYVENKL 431 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 25/198 (12%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----- 283 + + +++++S E++ + K E + ++ P A Sbjct: 139 RREMIISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPDSANSEQL 198 Query: 284 -------DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333 ++ LK G F Q+A Q +L +G +P + ++ Sbjct: 199 NAAAAKTQAIYERLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLP-PPFDRELSAM- 256 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASEKVK 385 + G T G++I + + T EV +I ++ + + ++K+ Sbjct: 257 EVGGITQPARTPGGFIILKLLERRGGETSLKDEVHVRHILVKPSEIRSEAQTKELAQKIY 316 Query: 386 EDYKRLEEFLALGTSMDE 403 + + E+F L S E Sbjct: 317 DRIQSGEDFATLAKSFSE 334 >gi|229010444|ref|ZP_04167648.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048] gi|228750864|gb|EEM00686.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048] Length = 289 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 31/242 (12%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++E+ + + + M + ++ +N VD ++ + Sbjct: 35 ITKEEFYNQMKTQAGKQVLNNMVM-------------EKVLIKNYKVDEKEVDKKFDEMK 81 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + K E + E+ + I++ +L+A++E K Sbjct: 82 KQVGDQ----FDTLMKQQGLKEETVKNGVRASLAQEQAIEKAITDKDLKAKFEDYK---- 133 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321 + ++ +++ A + + L +GK F +LA++ + LG F + + Sbjct: 134 --QEIKASHILVKDEETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMV 191 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 ++ L KK + + + GY I V+ +F + K DI ++ K Sbjct: 192 K-EFDEAARKL-KKDEVSEPVKTQHGYHIIKVTETHADA--TFDKAKADIKKEVVQEKTQ 247 Query: 382 EK 383 + Sbjct: 248 DA 249 Score = 38.4 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 43/222 (19%) Query: 279 NQKEADEAFQSLKK--GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++KE D+ F +KK G +F L ++QG + G + SLA++ Sbjct: 69 DEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRA--------------SLAQEQ 114 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 K + +D +++ + K +E K+++E LA Sbjct: 115 AI-----------------EKAITDKDLKAKFEDYKQEIKASHILVKDEETAKKVKEELA 157 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G S +E++++ G K V + L + + ++ Sbjct: 158 QGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKLKKDEVSEPVKTQ---- 213 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 Y +++ E+ D ++ D+KK+ KT + Sbjct: 214 ----HGYHIIKVTETH--ADATFDKAKADIKKEVVQEKTQDA 249 >gi|260642857|ref|ZP_05417609.2| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM 17565] gi|260620246|gb|EEX43117.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM 17565] Length = 713 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 93/723 (12%), Positives = 215/723 (29%), Gaps = 127/723 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ + +GL + Sbjct: 61 EYTEVVKLMRGVNALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSTAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL-----------------AREGIN-------- 147 + ++P F F D+ L + Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMNESQMPTQYAEQYNNMYKYWSFIQK 178 Query: 148 -------EKEYIDHYTKMLSRTDVVGM------------FVGGMRPSNLLL--------- 179 ++Y K L V + G+ S+++ Sbjct: 179 TLIQSRLAEKYQALVAKALLSNPVEAQDAFDARVNQYNVLLAGIPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + A L + Y + Sbjct: 239 LKELYNKKKEQFKQYQETRDIKYIDVQVTASPEDRAAIQKEVDEATAQLATTTDDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 + Y+ ++ ++ + + A Y K K Sbjct: 298 IRSVGSDVPYVDLFYNKTAFPSDVVARLDSASVGAVYGPYYNGADNTINSFKIVAKAAVA 357 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F++LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYVEDALKTKTLADSIYNAIKDGANFVELAKKYGQTGDSNWLTAAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376 I +L S +++ G VI V+N K VK+++ Sbjct: 418 IDGDNL--KFISAINNTGVNELVNLPMGQANVILQVTNKKAVKDKYKVAVVKREV----- 470 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + E Y +F+A S++++ + L +D A + + + Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRL--LDRADLNSSEHGIGGVRGT 527 Query: 437 EQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 ++ L F K +P + M V + P R L+ V ++ + K Sbjct: 528 KEALRWAFDKAEPGEVSGLYECGESDHMMVVGLVSIKPEGYRSLKSVQDQLRAEIVKDKK 587 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 AE++ + + K+ + + ++T + + S Sbjct: 588 AEKIMADMKSANATSFDQYKSMTN-AVSDSLKMVTFAAPAYVSALRS--SEPLVGAYASV 644 Query: 556 PVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 PI+ V +V K+ + + L M + ++ L + Sbjct: 645 AEMNKLSTPIKGNAGVFVLQVYGKDKLNETFDAKTEEATLANMHAR-FASRLMNDLYLKA 703 Query: 615 SVT 617 +V Sbjct: 704 NVK 706 >gi|330955092|gb|EGH55352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae Cit 7] Length = 440 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 54/426 (12%), Positives = 134/426 (31%), Gaps = 72/426 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + E+ K G V A L ++LD L+ Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVR-EVQQTIAKRGSGVPPAEA----LQPQVLDRLILENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH----- 154 Q E G+ + I + N S D F + LA +G++ + + Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYNDAREQVRREM 141 Query: 155 ------YTKMLSRTDVVGMFVGGMRPSNLLLDQA-KRFYFENRSVDYIVLNNRHVPAIAD 207 ++ R V V S+L Q + F+ N + + Sbjct: 142 IISRVRQRRVAERIQVSQQEVKNFLASDLGKAQLSEEFHLANILIAT---PDSASSDAIQ 198 Query: 208 PSNAVLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEIS 249 + A +++ K ++ ++ + + + + + Sbjct: 199 AAAAKAKAIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSMPVG 258 Query: 250 NDE----------LQAEYEKNKEKYFSP--EIRTVEQLVFP---------NQKEADEAFQ 288 + + EK + + + V ++ ++ A + + Sbjct: 259 DVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEAETKRLAQKIYD 318 Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 ++ G+ F +LA+ + G +L+ L + + S +G+ + Sbjct: 319 RIQNGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLV-PEFRQ-VMSETPQGELSKPFQT 376 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +G+ + V + + + ++ A N +R K E+++ +++ + + + Sbjct: 377 QYGWHVLEVLGRRSTDAT--DQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEIKLPG 434 Query: 404 ISRREK 409 ++ + Sbjct: 435 ATQAAQ 440 >gi|315282338|ref|ZP_07870768.1| foldase protein PrsA [Listeria marthii FSL S4-120] gi|313614019|gb|EFR87733.1| foldase protein PrsA [Listeria marthii FSL S4-120] Length = 203 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 69/184 (37%), Gaps = 12/184 (6%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + Y L E +++S +L+ Y+ + V ++ ++ A E Sbjct: 13 KENLEYNLLVQKATEANMDVSESKLKTYYKTWEPDIT------VRHILVDDEATAKEIQT 66 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGS 345 LK G+KF LA+E + + G + P D + + ++L D + ++ + Sbjct: 67 KLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNTDDVSGIVKST 126 Query: 346 FGYVIAHVSNIKPSFT--VSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 +GY + + T VK I +Q+ + +K++ K + D Sbjct: 127 YGYHLIQLVKKTEKGTYEKEKANVKAAYIDSQLTSENMTAALKKELKAANIDIKDSDLKD 186 Query: 403 EISR 406 + Sbjct: 187 AFAD 190 >gi|261823065|ref|YP_003261171.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium wasabiae WPP163] gi|261607078|gb|ACX89564.1| Peptidylprolyl isomerase [Pectobacterium wasabiae WPP163] Length = 431 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 61/393 (15%), Positives = 123/393 (31%), Gaps = 66/393 (16%) Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 NS Q + + +Q+ G + L +I D L+ + Q + +G++ ++ Sbjct: 43 NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLDQ 98 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGM 172 I N+ S D S+LA EG+N Y + K + +V Sbjct: 99 AITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRVTVLP 154 Query: 173 RPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEY 229 + + L Q EN ++ I++ P A L K Sbjct: 155 QEVDTLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISEGADFGK 214 Query: 230 KRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPEIR------------------ 270 I+Y K ++ E+ + + + ++ Sbjct: 215 LAITYSSDSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR 274 Query: 271 -----------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQGK 305 ++ Q + + Q +K G F L+++ G Sbjct: 275 GGNKSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLLSQDPGS 334 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + LG S + + D + D++ L KKG+ + +H SFG+ + + + + Sbjct: 335 ANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPVHSSFGWHLIQLLDTRQVDKTD-- 390 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 R+ + +E ++E A Sbjct: 391 --AAQKEQAYRMIFNRKFAEEAQTWMQEQRAAA 421 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 112/329 (34%), Gaps = 34/329 (10%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 S L +N ++ + + + N++L A++ + + + + Sbjct: 43 NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLDQ 98 Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 ++ A S L + + YR K + +E +++ + E+ Sbjct: 99 AITNIAAQNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRRRVTVLPQEVD 158 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302 ++ + + + ++ P Q++ DEA + + +G F +LA Sbjct: 159 TLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISEGADFGKLAIT 218 Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + G + + +L + A+KG I G+ I V++I+ Sbjct: 219 YSSDSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277 Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 S + + + ++A K+ + ++++ G++ + + + K++S D Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKN----GST--DFAAQAKLLSQD 331 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + G P L ++ Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360 >gi|115352813|ref|YP_774652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] gi|115282801|gb|ABI88318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] Length = 452 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + + + +RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDY----IVLNNRHVPAIADPS 209 + + V G + S+ + + + + + I A + + Sbjct: 151 MLSKLREREVDGKITVSDAEVVNYIASQRGPSAAQQQDLRFQHIFIKAPTNAPQAEIEVA 210 Query: 210 NAVLTQWFEKYKDN-----------------------YRAP-----EYKRISYILFDVHE 241 ++ ++AP E + L Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + S V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RRQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVIDRRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|319654014|ref|ZP_08008107.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2] gi|317394336|gb|EFV75081.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2] Length = 290 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 14/148 (9%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L + I++++ EL+ YE K + ++ ++K A + L G+K Sbjct: 116 LLVEKAAIQDIKVTDKELKESYENYKPEI------KARHILLEDEKTAKDIKNRLNDGEK 169 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E K LG F + ++ ++L + F+ I GY I Sbjct: 170 FEDLAKEFSKDPGSAEDGGDLGWFGSGKMV-PEFEEAAYAL-EVNKFSDPIKTQNGYHII 227 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITK 379 V+ K SF+ ++K++ Q++++K Sbjct: 228 QVTEKKEKE--SFEYMRKELEYQLKVSK 253 >gi|291296508|ref|YP_003507906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber DSM 1279] gi|290471467|gb|ADD28886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber DSM 1279] Length = 305 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 28/241 (11%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 G+ S L K+ + E + + ++ + A S + + K ++ + E Sbjct: 52 QNGLSYSEEALAALKKRFLELVARERAII-LKAEAAGFAASKDDVQAAVAEVKADFDSEE 110 Query: 229 ----------------YKRISYILFD----VHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 Y + Y + K+++ S L+ Y +K ++ P+ Sbjct: 111 AFTQALKEAGIPSLEVYHTLVYEALTYNAYLEHLLKQLKTSEPALRLLYLVSKSQFALPK 170 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVS 324 ++ +EA + L KG+KF LA ++ G LG + Sbjct: 171 RYCSAHILVDTAQEAYQVIARLGKGEKFADLARALSKDPGSKEEGGDLGCEPRGTFV-AP 229 Query: 325 LADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 ++ +L + G+ + + FGY I + ++ + F+EV+ ++ +R + Sbjct: 230 FELALVAL-QPGESSKVPVKTEFGYHIILLKRVEAAGFQGFEEVRAELDQTIRNSAVYRL 288 Query: 384 V 384 + Sbjct: 289 L 289 >gi|218885391|ref|YP_002434712.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756345|gb|ACL07244.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 320 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 112/358 (31%), Gaps = 83/358 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + F EL + + E R V L ++LD+L+S + Sbjct: 36 NKIAAVVNGEMITFFDVQAQATPELMRLGLDRNNPAHQEAVRKVHL--QVLDSLISDILM 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q E + G V E+ + + ++ S F +L ++G++ D K + Sbjct: 94 NQEAERWKITVQDGEVENELRKF----VQRSQLSQQEFERQLTQQGLSMDVMRDRVRKGI 149 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ + + + + ++++ Sbjct: 150 LRHRLLTLM---------------------------------IARKIVITQEDVKKYYDA 176 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K + R+ + +F Sbjct: 177 HKSQFVTDRTVRLGLV----------------------------------------IFAP 196 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKG 336 A+ ++ G+ F QLA + + S G K + +++ L K G Sbjct: 197 TANAEALADKVRTGQTTFEQLAASESIGPNPGSGGDIGTLKWTDLAPAWKEALDGL-KAG 255 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + +PVI + + + + + +E +I N +R K E+ E K+L + Sbjct: 256 ETSPVILVEGRKAMLKLVAVTTGRSQTVEEATPEIENILREPKLQERFTEYTKQLHDK 313 >gi|260912199|ref|ZP_05918751.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472 str. F0295] gi|260633633|gb|EEX51771.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472 str. F0295] Length = 713 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 84/676 (12%), Positives = 181/676 (26%), Gaps = 129/676 (19%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATL 99 V V +K+ F + I + G +N E+ + + + V + Sbjct: 43 QQVGEVYGEKISVQEFQKMVDEYAEAIKMQQGQDNLNDEQLNQ--VKDMVWNTYVQNKLV 100 Query: 100 DQFIEDIGLEADHGRVWG--------EIARSPLFHGKDNKFSHDVFVSRL----AREGIN 147 ++ +++GL + + ++P + + +F L ++ N Sbjct: 101 EKEAKELGLTVTDQEMQNILSQGTNPMLMQTPFVNQQTGRFDASSLKKFLAEYKNQQTAN 160 Query: 148 EK---EYI----------DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR---------- 184 + +Y L + + + + A + Sbjct: 161 PQMAQQYESIYKYWTFIEKQLRTQLLAQKYQSLLAHCLLSNPVEAKMAFKEENEESQIQL 220 Query: 185 --------------------------------FYFENRSVDYIVLNNRHVPAIADPSNAV 212 Y E R + Y+ + A Sbjct: 221 AAFPYSSIEDSKVQVSESDLKAKYEELKPRFKQYVETRDIKYVDIQVDASTADKAALRKQ 280 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN------------ 260 + ++ + + R S L E ++ A + Sbjct: 281 FADYTKELAEAADPADVVRKSTSLVSYLGLPVGKEAYPGDIAARLDSMGVGSVYGPVENT 340 Query: 261 ----------KEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQG 304 K P+ Q+ K AD + +L G F LA++ G Sbjct: 341 QDNTLNLIKLVAKVQLPDSVEYRQIQVGGVTPEAAHKTADSIYNALNNGADFEALAKKYG 400 Query: 305 KS--LSDISLGSFSKEYIPDVSLADSIFSLAKKG--DFTPVIHGSFGYVIAHVSNIKPSF 360 ++ + ++ + D D I SL G D + G +I V N K Sbjct: 401 QTGEKTWMTTRQYQMAPSMDKDTKDYINSLNTMGVNDIKNITLAQ-GNIILQVLNRKAMV 459 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 T V + + +K E + Y + F++ + + + + + Sbjct: 460 TKYQAAV---VKRNVEFSK--ETYRTAYNKFSSFVSANPTAESVVKNAAKSGYRVQEAKD 514 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 +A I + L +F ++ + + V + P R L Sbjct: 515 V--TTAQHNLAGIRSTREALKWLFDANEGDVSPLYECGDNNHLLLVVLDRINPIGYRSLN 572 Query: 481 --EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538 +V VK + K KA Q++ + G + G + NQ+ Sbjct: 573 DPQVKEMVKAEVIRDK-------KAEQILAKL--NGVTSIAAAQAKGGVVTPVNQVTFAS 623 Query: 539 ----NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590 V + P++ +F+VT + P +E + Sbjct: 624 PVFLTATGASEPALSGAVAATAKGAFDKTPVKGNAGVYMFQVTGRTMRPVKYNAKETELR 683 Query: 591 ISYLTQMMNKDLLDSV 606 + + ++ + Sbjct: 684 LRQRAMQYAGNFMNQL 699 >gi|189462485|ref|ZP_03011270.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136] gi|189430646|gb|EDU99630.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136] Length = 711 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 96/727 (13%), Positives = 208/727 (28%), Gaps = 139/727 (19%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F+ L G V + + Sbjct: 4 LQTIR--SKGPLLVIVIGLALFAFIAGDAWKILQPHQGKQDAGEVNGNTLSAQDYQKMVD 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G SE + + ++ + V+ + + +GL+ + I Sbjct: 62 EFSEVIKLTNGLNSLSED-QLTNIKDQVWNTYVTNELIAAEAKKLGLKVTDKELQAIIDE 120 Query: 120 ------ARSPLFHGK-DNKFSHDVFVSRL---AREGIN--EKEYIDHY------------ 155 ++P F F D+ L A + +Y+++Y Sbjct: 121 GTNPLLMQTP-FRNPQTGAFDKDMLKKFLVDYANLDASKMPAQYVEYYQTMGNFWKFVER 179 Query: 156 --TKMLSRTDVVGMFVGGMRPSNLLL--------------------------------DQ 181 + + + + + + D Sbjct: 180 TLKQSVLAEKYQNLIAKSLISNPVAAEDVFNGHTAQSDLLLAGIPYSSISDSTITVSNDD 239 Query: 182 AKRFYFE----------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---YKDNYRAPE 228 K+ Y E R + +I + A +T++ + ++Y A Sbjct: 240 IKKLYEEKKESFKQPVETRDIKFIDVRVVPSEADRQEVQKEVTEYSSQLITTTNDYTAFI 299 Query: 229 YKRISYILFDVHEKEKKIEISNDELQ-----------AEYEKNKEKY---------FSPE 268 S I F K + S+ + Y + + Y +P+ Sbjct: 300 RSTGSVIPFADVPVNKTVLPSDVASRLDSTSVNEVYGPYYNQADDSYNAFKIIAKTTAPD 359 Query: 269 IRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYI 320 Q+ EA D + +LK+G F +LA++ G++ + ++ S+ + Sbjct: 360 SIQFRQIQVYADTEAKTASLADSIYNALKEGADFAELAKKYGQTGEANWVNAQSWEGAAL 419 Query: 321 --PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI- 377 + + + + S + V G +I V N K +K + Sbjct: 420 DAENATFINKLIS-QPVNELANVKVGQAN-LILQVMNKKA--------MKDKYKVAVIKC 469 Query: 378 --TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 + E Y + +F+A T+++ + + + L D V + Sbjct: 470 PVEFSKETYNNAYNKFSQFVAQNTTIENLEKNAEEAGYSLTPRSNFRSDEHY--VGGVKS 527 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 + L VF + + V ++ PA + +V ++ + K Sbjct: 528 TREALKWVFDAKPGEVSPLYECGENDHLLVVALEAINPAGYVNINKVSDMLRSEVLRNKK 587 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF------GYDGI 549 AE++ + K F + + G ++ + + F I Sbjct: 588 AEQIMGQM-----------KGFNSLAQVKGMKDAISDTVKHVTFNAPAFISVTRASEPAI 636 Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 S S PI+ + +V N + + K M I Sbjct: 637 SAYASKTELNKVSAPIKGNAGVYMIQVYNQEKSTEKFDAKKEETALSNMAARYAGQCIYE 696 Query: 610 LKSQYSV 616 L+ + + Sbjct: 697 LRDKAEI 703 >gi|226940617|ref|YP_002795691.1| signal peptide protein [Laribacter hongkongensis HLHK9] gi|226715544|gb|ACO74682.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9] Length = 257 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 6/143 (4%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + K +S +++AEY++ K + E R ++ P+Q+EA + + LKKG +F LA Sbjct: 102 DFMKSHPVSEADVRAEYDRMKVQMARKEYR-ARHILVPSQEEAAKVLEQLKKGARFEDLA 160 Query: 301 EEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + G + LG + + ++ LAK + FG+ I +++ Sbjct: 161 RQYSIDTGSKANGGDLGFVDPAQLV-PEFSGAMTKLAKGQITQTPVKSQFGWHIIQLTDT 219 Query: 357 KPSFTVSFQEVKKDIANQMRITK 379 K + + V+ + Q++ + Sbjct: 220 KEADFPALDAVRAQLEQQIQGQR 242 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 18/163 (11%) Query: 468 IKESIPARDRKLEEVLTD--------VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 +++ + + +V + +K+++ +A + VLE K+G F D Sbjct: 100 VRDFMKSHPVSEADVRAEYDRMKVQMARKEYRARHILVPSQEEAAK-VLEQLKKGARFED 158 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVF 574 + + + + F + FSG + P+++ + + Sbjct: 159 LARQYSIDTGSKA----NGGDLGFVDPAQLVPEFSGAMTKLAKGQITQTPVKSQFGWHII 214 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 ++T++K D + L Q + D+ IA LK+Q V Sbjct: 215 QLTDTKEADFPALDAVRAQLEQQIQGQRFDAYIARLKAQAKVQ 257 >gi|254252165|ref|ZP_04945483.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] gi|124894774|gb|EAY68654.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa AUO158] Length = 260 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 3/132 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ ++++A E +K G KF L Sbjct: 103 ENFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKELIAKIKAGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVDDI 222 Query: 357 KPSFTVSFQEVK 368 + F +VK Sbjct: 223 RDIAPPPFDQVK 234 >gi|296450315|ref|ZP_06892075.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296878727|ref|ZP_06902731.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] gi|296260876|gb|EFH07711.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08] gi|296430301|gb|EFH16144.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07] Length = 380 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 46/235 (19%) Query: 196 VLNNRHVPAIADPSNAVLTQWF---------------EKYKDNYRAPEYK---RISYILF 237 +L++ +N L + E++ + E + L Sbjct: 141 ILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKKELV 200 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------------QK 281 +K ++++ E + Y KNK Y ++ +K Sbjct: 201 ASKYLNEKSKVTDKEAENYYNKNKNNYL---QVRASHILIKTVDDKGKQVSNSKKAELKK 257 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 EA+E + + G+ F LA++ + S LG F K + + S + F+L KKG+ Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKGEV 315 Query: 339 T-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++ +GY I ++ K F+E+K D+ + + K S ++ ++ Sbjct: 316 SNKLVESDYGYHIIKKTDEK---YQPFEEIKSDLVSSLTSEKQSLLIQNLKEKYN 367 >gi|293603952|ref|ZP_06686366.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292817645|gb|EFF76712.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 258 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 4/158 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297 + + K +S+ ++ AEYEK K++ V ++ ++K A++ +K K F Sbjct: 99 MADYLAKNPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQIKSNKSKFD 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ K G ++ A ++ L K + FG+ I V Sbjct: 159 DLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQLKKGQLVDKPVQTQFGWHIIMVD 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +P +V+ + +R ++ K+ + + Sbjct: 219 DTRPVEFPPLDQVRPQLEEMLRQQTLADYQKQLRDKAK 256 >gi|119474853|ref|ZP_01615206.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma proteobacterium HTCC2143] gi|119451056|gb|EAW32289.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma proteobacterium HTCC2143] Length = 440 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 57/403 (14%), Positives = 122/403 (30%), Gaps = 60/403 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V S Q + I Q+ G V + + ++D L+ Sbjct: 48 DQVIAIVDDDVVLASELQERVAQVVANIQQQ-GKEVPPL----PEIRQSLMDQLILENIQ 102 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q G+ ++ + R + N+ + D F L +G++ + K + Sbjct: 103 MQLAVRAGVRISDAQLNDSMLRI----AQQNQLTLDQFRQALDADGLSYAGTREQIRKEM 158 Query: 160 SRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 V + L D+ + + + ++ + AD + A Sbjct: 159 MLQRVQQGNVNQRVQITDQEITNFLDSDEGAALTAPDYRMLHTLIPLPSSASSADITAAK 218 Query: 213 LTQ--WF------EKYKDNYRAPEYKRISYILFDVHEKEKKI-----EISNDE------- 252 + + E Y++ ++ + I ++ DE Sbjct: 219 VRAEKLYLRVQEGESYEEVLATTPFETTDLGWRKAADLPSLIADLTTTMAKDETAEPVQS 278 Query: 253 -----LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---------QSLKKGKKFIQ 298 L + E P V ++ + DEA Q + G F + Sbjct: 279 PSGFHLVKLADSRGEGELIP-QAKVRHILLKSSAIRDEAATEALAISLRQQIIDGADFGE 337 Query: 299 LAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA E G +L LG S + + A+ D + FG+ I V Sbjct: 338 LAREYSEDIGSALEGGDLGWSSPGQLVGE--FQKVMDQAEINDISAPFTSQFGWHILQVL 395 Query: 355 NIKPSFTVSFQEVKKDI-ANQMRITKASEKVKEDYKRLEEFLA 396 + +++++I N + K ++++ +++ + Sbjct: 396 ERRDKDVT--DDIRRNITRNYLHKRKFGDELETWLQKIRDEAY 436 >gi|94499974|ref|ZP_01306509.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65] gi|94427832|gb|EAT12807.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65] Length = 436 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 55/403 (13%), Positives = 126/403 (31%), Gaps = 73/403 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + S Q G + + L ++L+ L+ Sbjct: 40 DSIAAVVDDGIIMESELEQRIDTIK---RQSQGMRLPPDDI----LQDQVLERLIIENLQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ ++ I K N + F L ++G++ + + + Sbjct: 93 LQMAERSGMRISDEQLNQTIINI----AKQNGLTLREFKKALEKDGVSYAQAREQIRRER 148 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 ++V VG + S +D ++ + + L + + + S A L + Sbjct: 149 IISEVQRYRVGSKINISEQDVDNFLNSVRGKSATAEEYRLGHILIQVPSQASRAQLKRAQ 208 Query: 218 EK---------YKDNYRA-------------------PEYKRISYILFDVHEKEKKIEIS 249 K +++ + + + D+ KK ++S Sbjct: 209 NKAEDIVKKLRNGADFQQMAISQSEGRNALKGGDLGWRKEAELPTLFADIVPDLKKGQVS 268 Query: 250 NDE-------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 N + +K ++ +K ++ ++ LK G Sbjct: 269 NPIRSASGYHIIKISDKRGGDTQMVRQTKARHILIQENEIRNSQQAKKLINDLYKKLKNG 328 Query: 294 KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F +LA+E LS LG ++ + + ++ + KKG + FG+ Sbjct: 329 ADFDELAKEYSDDPGSKLSGGDLGWVNQGDMV-PAFEQTMNA-TKKGQISEPFKSRFGWH 386 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + V++ + +KD+ +++ +A + + E Sbjct: 387 VLQVTDYR----------QKDVGEEIQRNQARQLLYSRRFEEE 419 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 18/204 (8%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKK 292 KI IS ++ + K + E + ++ Q +A++ + L+ Sbjct: 161 KINISEQDVDNFLNSVRGKSATAEEYRLGHILIQVPSQASRAQLKRAQNKAEDIVKKLRN 220 Query: 293 GKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G F Q+A Q + +L LG + +P AD + L KKG + I + GY Sbjct: 221 GADFQQMAISQSEGRNALKGGDLGWRKEAELP-TLFADIVPDL-KKGQVSNPIRSASGYH 278 Query: 350 IAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I +S+ + T ++ K I Q + S++ K+ L + L G DE+++ Sbjct: 279 IIKISDKRGGDTQMVRQTKARHILIQENEIRNSQQAKKLINDLYKKLKNGADFDELAKEY 338 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAA 432 G +G V A Sbjct: 339 SDDPGSKLSGGDLGWVNQGDMVPA 362 >gi|239906716|ref|YP_002953457.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1] gi|239796582|dbj|BAH75571.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1] Length = 371 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 45/368 (12%), Positives = 105/368 (28%), Gaps = 91/368 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + M+ Q G + + R L +++L+++++ + Sbjct: 69 DRVVAVVNGKLITLFDVNTRV---ADMVKQTQGVALKPDDPRLDDLRRQVLESMITDMLI 125 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + + + + +I K N S FV+ LA+EG+ K++ D Sbjct: 126 ESEANKLKVTVSDTEIDSQIEEI----KKKNNLSQQQFVTELAKEGLTLKQFRDKMRLDS 181 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++G V ++ + ++EK Sbjct: 182 IKKRLLGFM---------------------------------VHRKVLVTDDEIRDYYEK 208 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K + + ++S + ++ PN Sbjct: 209 NKGS-------------LSAAKSVLGPKVSG--------------------GLGFIMVPN 235 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+A+E + G F A++ LG + + L ++ ++ Sbjct: 236 KKQAEELRDRINSGSMSFADAAKKFSIGPGRDQGGDLGDVQIKDLA-PPLRSALTAVP-P 293 Query: 336 GDFTPVIHGSFGYVIA------------HVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 G + + V+ S++ K+ I + K + Sbjct: 294 GQVSEPVLLDGKAVLLVQRTASAPAEKPAAPAAAAGSNPSYEAAKEQIQELLYKQKFDKL 353 Query: 384 VKEDYKRL 391 +E L Sbjct: 354 FQEYIDNL 361 Score = 38.4 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 15/134 (11%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 +A +L + +F D K + D + K S + + P Sbjct: 236 KKQAEELRDRINSGSMSFADAAKKFSIGPGRDQGGDLGDVQIKDLAPPLRSALTAVPPGQ 295 Query: 560 VKCFPIENGLSYVVFKVTN---------------SKVGPVQEKDKFISYLTQMMNKDLLD 604 V + +G + ++ + T S K++ L + L Sbjct: 296 VSEPVLLDGKAVLLVQRTASAPAEKPAAPAAAAGSNPSYEAAKEQIQELLYKQKFDKLFQ 355 Query: 605 SVIAYLKSQYSVTV 618 I L+S+ V V Sbjct: 356 EYIDNLRSKAVVEV 369 >gi|325276043|ref|ZP_08141858.1| SurA domain-containing protein [Pseudomonas sp. TJI-51] gi|324098828|gb|EGB96859.1| SurA domain-containing protein [Pseudomonas sp. TJI-51] Length = 428 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 54/409 (13%), Positives = 135/409 (33%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 20 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGSVPPA-----GALEQQVLERLIVENLQ 74 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LA +G++ + D + + Sbjct: 75 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALAHDGLSFDDARDQVKREM 130 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHV-PAIADPSN 210 + V ++ S + + E R + ++ A + Sbjct: 131 IISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTPEAANSADIQKAA 190 Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243 + + +++ K ++ + P V E Sbjct: 191 RQVGEVYQQLKQGADFGQLAIARSASENALEGGEMGWRKAAQLPPDFAKMLSSMPVGEIT 250 Query: 244 KKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292 + I I N + + E+ + + + V ++ ++ A+ ++ +K Sbjct: 251 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSDAATEQLAERLYERIKN 310 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G T +G+ Sbjct: 311 GEDFAELAKSYSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 368 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + ++ ++ A N +R K E+++ +++ + Sbjct: 369 HVLEVLGRRATDST--EQAREQQALNVLRNRKYDEELQTWLRQIRDEAY 415 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 30/262 (11%), Positives = 90/262 (34%), Gaps = 17/262 (6%) Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 + AN I KA+ +V E Y++L++ G +++ L + + Sbjct: 178 PEAANSADIQKAARQVGEVYQQLKQ----GADFGQLAIARSASENALEGGEMGWRK---- 229 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVK 487 ++ + +P+G ++ ++++E + L +EV Sbjct: 230 ----AAQLPPDFAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHI 284 Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 + ++ + + + + E K G++F ++ K+ + ++ + Sbjct: 285 LIKPSEIRSDAATEQLAERLYERIKNGEDFAELAKSYSEDPGSALNGGDLNWVDPNSLVP 344 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLD 604 + + + V P + + V +V + E+ + ++ L + L Sbjct: 345 EFREQMANAQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALNVLRNRKYDEELQ 404 Query: 605 SVIAYLKSQYSVTVHDNLIQRY 626 + + ++ + V + + Sbjct: 405 TWLRQIRDEAYVEIKLPGADQA 426 >gi|34498387|ref|NP_902602.1| signal peptide protein [Chromobacterium violaceum ATCC 12472] gi|34104241|gb|AAQ60600.1| probable signal peptide protein [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 66/154 (42%), Gaps = 3/154 (1%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K + + +++A Y++ + + Q+ ++ +A + LKKG KF +L Sbjct: 105 ADIAEKANVGDAQIKARYDEMAAQVAGSKEVHAYQITLGSEADAQKVIAQLKKGAKFDEL 164 Query: 300 AEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + + + G + + LA+++ ++ K + G+ + V++I Sbjct: 165 VKTRSIDPNAKQSGGDMNWGNLSRMEPKLAEALKAIPKGQVSSAPYQSQLGWHVFKVADI 224 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + VK IA Q++ ++ V++ + Sbjct: 225 RNAQVPPLDAVKPQIARQLQEEAIAKAVEDLRAK 258 Score = 38.0 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 4/141 (2%) Query: 480 EEVLTDVK--KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 +E+ V K+ + + A +++ + K+G F ++ K M Sbjct: 123 DEMAAQVAGSKEVHAYQITLGSEADAQKVIAQL-KKGAKFDELVKTRSIDPNAKQSGGDM 181 Query: 538 DNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596 + N +++ P V P ++ L + VFKV + + V D + + Sbjct: 182 NWGNLSRMEPKLAEALKAIPKGQVSSAPYQSQLGWHVFKVADIRNAQVPPLDAVKPQIAR 241 Query: 597 MMNKDLLDSVIAYLKSQYSVT 617 + ++ + + L+++ + Sbjct: 242 QLQEEAIAKAVEDLRAKSKIQ 262 >gi|260219454|emb|CBA26299.1| Probable parvulin-type peptidyl-prolyl cis-trans isomerase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 239 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 ++YK+ + + LF + +KK ++++E +AEY+K E R ++ Sbjct: 63 DEYKNQLELTKQSILIRELFG--DFQKKNPVTDEETKAEYDKFASANAGKEYR-ARHILV 119 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAK 334 + +A LKKG KF LA++ K + G ++ +D++ L+K Sbjct: 120 EKEDQAKALIAQLKKGAKFEDLAKKNSKDPGSGANGGDLDWANASSYVKEFSDALTGLSK 179 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 + FG+ I + +++ + +++VK I Sbjct: 180 GKMTDAPVKTQFGFHIIRLEDVREAQLPKYEDVKPQI 216 >gi|325526673|gb|EGD04205.1| SurA domain-containing protein [Burkholderia sp. TJI49] Length = 452 Score = 91.6 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 119/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPTDQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + +RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRARLESQGVPWSIFTADARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL---------------- 197 + + V G + S+ + + + + + + Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTEIEAA 210 Query: 198 -NNRHVPAIADPSNAVLTQWFEKYKDN----------YRAP-----EYKRISYILFDVHE 241 S A + + + +++P E + L Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEASDAKKGGDLGFKSPSALPAEVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + + V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLLDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RNQIEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVIGRRDAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|163733010|ref|ZP_02140454.1| PPIC-type PPIASE domain protein [Roseobacter litoralis Och 149] gi|161393545|gb|EDQ17870.1| PPIC-type PPIASE domain protein [Roseobacter litoralis Och 149] Length = 285 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E + I+ +++QA Y+ E ++ ++EA +++ G F A Sbjct: 110 EIALEQAITEEDIQAAYDAEFGNIDPEEEFNASHILLETEEEAIAVKEAIDAGANFAATA 169 Query: 301 EEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 E+ S LG F + S + +L + G+ + + FG+ + +++ + Sbjct: 170 REKSTGPSGPNGGELGWFGTGMMV-PSFEAATIAL-EVGEVSDPVETQFGWHVIVLNDTR 227 Query: 358 PSFTVSFQEVKKDIANQM 375 + ++ ++ I +++ Sbjct: 228 KKEIPTLEQAREGIQSRL 245 >gi|319941473|ref|ZP_08015801.1| hypothetical protein HMPREF9464_01020 [Sutterella wadsworthensis 3_1_45B] gi|319805093|gb|EFW01923.1| hypothetical protein HMPREF9464_01020 [Sutterella wadsworthensis 3_1_45B] Length = 261 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 7/163 (4%) Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 + V + KK +S+ E++A Y+ K+ Y E V ++ ++EA Q L KG+ Sbjct: 99 VELLVADYAKKNPVSDKEVRAAYDNAKKVYGDTEY-QVRHILVKTEQEAKNIIQRLNKGE 157 Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTP-VIHGSFGYVI 350 KF LA+ + G P + + ++ F + GD I FG+ + Sbjct: 158 KFDALAKSESLDPKSGPAGGLIGWLSPSNVEPNFGNA-FKILSAGDVAQAPIQNQFGWHV 216 Query: 351 AHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + +++ K + Q+ A E ++ + Sbjct: 217 IKLDAKRSQKNFPTYESQKDSLRAQLSQLNAKRHFAELVQKAK 259 >gi|70732935|ref|YP_262706.1| survival protein SurA [Pseudomonas fluorescens Pf-5] gi|68347234|gb|AAY94840.1| survival protein SurA [Pseudomonas fluorescens Pf-5] Length = 440 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 132/408 (32%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 33 DKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSV-----LEQQVLERLIVENLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ D + + Sbjct: 88 LQIGERSGIRITDEELNQAIGTI----AQRNSMSIEQFRAALAHDGLSYEDARDQVRREM 143 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIADPSNA 211 + V ++ S + + E + ++ + A S A Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSEAIQSAA 203 Query: 212 -VLTQWFEKYKD--NYRAPEY----------------KRISYILFDVHEKEKKIEISNDE 252 + +++ K ++ ++ + + + + + + Sbjct: 204 RQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAVGDIT 263 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + +K + V ++ ++ A + + ++ G Sbjct: 264 QPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDRIEAG 323 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L + + + + +G + +G+ Sbjct: 324 EDFAELAKSYSEDPGSALNGGDLNWIDPNALV-PEFRE-VMAKTPQGQLSKPFKSPYGWH 381 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + S + ++ A +R K E+++ +++ + Sbjct: 382 VLEVLGRRATDSTS--QAREQQAMTVLRNRKYDEELQTWLRQIRDEAY 427 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 40/278 (14%) Query: 151 YIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 + L ++ G+R ++ L+QA + S+ Sbjct: 73 LEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNSMSIEQFRAALAHDGLSY 132 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +A R + + ++I++S E++ + K E Sbjct: 133 EDA-------------RDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSE 179 Query: 269 IRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGK---SLSDISLG 313 + ++ P + A+ E +Q LK+G F QLA + +L +G Sbjct: 180 ELHLANILIPTPESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMG 239 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK----- 368 +P + ++A GD T G++I + + + EV Sbjct: 240 WRKAAQLP-PPFDRELSAMA-VGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHIL 297 Query: 369 ---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +I ++ + ++K+ + + E+F L S E Sbjct: 298 IKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSE 335 Score = 42.7 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 34/312 (10%), Positives = 102/312 (32%), Gaps = 52/312 (16%) Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 S+++ + + + +R + +E+++ + ++ FLA ++S + +I +P Sbjct: 131 SYEDARDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 190 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + A + Q L F + AL G W + + P Sbjct: 191 PESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPF 250 Query: 476 DRKLE------------------------------EVLTDVK--------KDWKTVKTAE 497 DR+L +V +V + ++ + + Sbjct: 251 DRELSAMAVGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETK 310 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 ++ K + + + G++F ++ K+ + ++ + +V + Sbjct: 311 RLAQK----LYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTP 366 Query: 558 EMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 + P ++ + V +V + + + ++ L + L + + ++ + Sbjct: 367 QGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEA 426 Query: 615 SVTVHDNLIQRY 626 V + ++ Sbjct: 427 YVEIKLPGAEQA 438 >gi|187477572|ref|YP_785596.1| protein foldase [Bordetella avium 197N] gi|115422158|emb|CAJ48682.1| putative protein foldase [Bordetella avium 197N] Length = 258 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297 + + KK +++ E++AEYEK K++ + V ++ ++K A++ +K GK KF Sbjct: 99 MADYLKKHPVTDAEVKAEYEKIKKEQAGKQEYDVRHILVEDEKTANDLLAQIKSGKLKFE 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A++ K G ++ AD+I L K + FG+ I Sbjct: 159 DAAKKYSKDPGSAERGGDLGWAPASNYVPPFADAITKLKKGEIADKPVQTQFGWHIIQEK 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + +V+ + MR K + KE ++ + Sbjct: 219 DARAVEFPPLDQVRSQLEEMMRQQKLNAFQKELREKAK 256 >gi|296445269|ref|ZP_06887228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] gi|296257224|gb|EFH04292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus trichosporium OB3b] Length = 335 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 33/247 (13%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I + + + +R + LL + E + + Sbjct: 77 ITTSQLRAYVEALGAREQ-----AAIAKEPGLLSQAVRAMLNERVVLQEALAKKWDQQPK 131 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 L + + + S +ELQ Y+ N+ + Sbjct: 132 VAAQLEQLRE--------------RALVESYLQSVSVPPADYPSEEELQKAYDANRSSFV 177 Query: 266 SPEIRTVEQLVFPNQKEADEA------------FQSLKKGKKFIQLAEEQGKSLSDISLG 313 P + + + K+AD A + LK G F +A+ Q ++ LG Sbjct: 178 VPRQFQLGHIFVQSPKDADRATEDKAKKTLEDIQRKLKSGADFAAVAKAQSEAKDGGELG 237 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 ++ I + + L K G + I G+ + + K S T E ++ +A Sbjct: 238 WLAEGQI-RPEIRTRVMGLVK-GAVSEPIQLDDGWHFVKLIDTKASTTRPLAEAREQLAQ 295 Query: 374 QMRITKA 380 QMR+ +A Sbjct: 296 QMRVERA 302 >gi|253689994|ref|YP_003019184.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756572|gb|ACT14648.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 431 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 125/394 (31%), Gaps = 68/394 (17%) Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 NS Q + + +Q+ G + L +I D L+ + Q + +G++ ++ Sbjct: 43 NSLLQSVKLNAQQAGQQLP----DDATLRHQITDRLIMDNIILQMAQKMGIQVTDEQLEQ 98 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSN 176 I N+ S D S+LA EG+N Y K + ++V + Sbjct: 99 AITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTVLP 154 Query: 177 LLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +D + + D + L++ +P +P+ + + E + + + Sbjct: 155 QEVDTLAKQIANQTGENDELNLSHILIPLPENPTQQQVDE-AENLATSLVKQISEGADFG 213 Query: 236 LFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIR----------------- 270 + + E+ + + + ++ Sbjct: 214 KLAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDI 273 Query: 271 ------------TVEQLVFP---------NQKEADEAFQSLKKG-KKFIQ----LAEEQG 304 ++ Q + + Q +K G F L+++ G Sbjct: 274 RGGNKSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLLSQDPG 333 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG S + + D + D++ L KKG+ + IH SFG+ + + + + Sbjct: 334 SANQGGDLGWASPD-MYDPAFRDALLKL-KKGEISQPIHSSFGWHLIQLLDTRQVDKTD- 390 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 R+ + +E ++E A Sbjct: 391 ---AAQKEQAYRMIFNRKFAEEAQTWMQEQRASA 421 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 113/329 (34%), Gaps = 34/329 (10%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 S L +N ++ + + + N++L A++ + + + + Sbjct: 43 NSLLQSVKLNAQQAGQQLPDDAT---LRHQITDRLIMDNIILQMAQKMGIQ-VTDEQLEQ 98 Query: 198 NNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 ++ A S L + + YR+ K + +E +++ + E+ Sbjct: 99 AITNIAAQNRMSLDQLKSQLAYEGLNYNTYRSQIRKEMLISEVRNNEVRRRVTVLPQEVD 158 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF-------QSLKKGKKFIQLAEE 302 ++ + + + ++ P Q++ DEA + + +G F +LA Sbjct: 159 TLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISEGADFGKLAIT 218 Query: 303 QGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + G + + +L + A+KG I G+ I V++I+ Sbjct: 219 YSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIR-GGN 277 Query: 362 VSFQEVKKDIANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 S + + + ++A K+ + ++++ G++ + + + K++S D Sbjct: 278 KSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKN----GST--DFAAQAKLLSQD 331 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + G P L ++ Sbjct: 332 PGSANQGGDLGWASPDMYDPAFRDALLKL 360 >gi|317401961|gb|EFV82563.1| parvulin-type peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans C54] Length = 258 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 4/158 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297 + + K +S+ ++ AEYEK K++ V ++ ++K A++ LK K KF Sbjct: 99 MADYLAKHPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQLKSNKGKFD 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ K G ++ A ++ L K + FG+ I V Sbjct: 159 DLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQLKKGQLVDKPVQTQFGWHIIMVD 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +P +V+ + +R ++ KE ++ + Sbjct: 219 DTRPVEFPPLDQVRTQLEEMLRQQTLADYQKELREKAK 256 >gi|187922682|ref|YP_001894324.1| SurA domain [Burkholderia phytofirmans PsJN] gi|187713876|gb|ACD15100.1| SurA domain [Burkholderia phytofirmans PsJN] Length = 453 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 51/427 (11%), Positives = 119/427 (27%), Gaps = 78/427 (18%) Query: 30 LSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 + S TV V + ++Q+ V ++ L Sbjct: 28 VQAQALGGSSGQTVDTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQ-----L 82 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 +++L+ +V Q ++ + D V + R N S DV+ SR+ +G Sbjct: 83 RQQVLNQMVLERIQLQKAKEDNINIDDATVQKTLERLAA----ANNLSLDVYRSRIEAQG 138 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVD----------- 193 + + L+ + + V + S+ + + R + Sbjct: 139 VPWSTFTSDARTELTLSRLREKEVDSKVTVSDAEV---ANYIASQRGPNAGATSDLHLQH 195 Query: 194 -YIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRA------------------------ 226 ++ + + + K N+ Sbjct: 196 IFLKAPLNAPETDIEAAQQKAQALLAEAKGGANFDKLAKSNSQAPDASKGGDTGFVAPSK 255 Query: 227 --PEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF- 277 PE + + I ++ E+ ++ + S + V ++ Sbjct: 256 LPPEVVKAVSTMRPGEVNPDLIRTNDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 315 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLA 326 +++ E + + G F + A + G S LG S Sbjct: 316 VGDGMSEPQARQKLLEIKKEIAAGGDFAKFAHTYSQDGSSSQGGDLGWISPGETV-PEFE 374 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 ++ +L + G + + +GY + V + S S + + KA + + Sbjct: 375 RAMNNL-QDGQISDPVRSEYGYHLIQVLGRRESEG-SVSQQMDLARQAIGQRKAEQAYAD 432 Query: 387 DYKRLEE 393 + L + Sbjct: 433 WLRELRD 439 Score = 46.5 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 95/271 (35%), Gaps = 19/271 (7%) Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVK 385 D+I ++ G T +I N + + ++++ + NQM + + +K K Sbjct: 42 DTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQLRQQVLNQMVLERIQLQKAK 101 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 ED +++ +++ ++ + S+D+ + V + E L R+ Sbjct: 102 EDNINIDDATVQ-KTLERLAAANNL-SLDVYRSRIEAQGVPWSTFTSDARTELTLSRLRE 159 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-------VKKDWKTVKTAEE 498 K+ D V + D ++ I ++ +D +K +T E Sbjct: 160 KE----VDSKVTVSD-----AEVANYIASQRGPNAGATSDLHLQHIFLKAPLNAPETDIE 210 Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 + + Q +L +K G NF + K+ + + + + + V + Sbjct: 211 AAQQKAQALLAEAKGGANFDKLAKSNSQAPDASKGGDTGFVAPSKLPPEVVKAVSTMRPG 270 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589 V I + + ++ + + G D Sbjct: 271 EVNPDLIRTNDGFEIVRLVDRRAGQGTSSDA 301 >gi|218665253|ref|YP_002427402.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517466|gb|ACK78052.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 436 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 61/469 (13%), Positives = 139/469 (29%), Gaps = 89/469 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + E L +++L ++ Sbjct: 31 DKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDI----LRRQVLQQMILQDIE 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q G++ D + I+ + N + D LA +G + + + Sbjct: 87 LQIAHRAGIKVDKATLDQAISNL----AQANHLTPDQLRQALANQGQSWERFTHDLED-- 140 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 +L+D+ + ENR + + ++ Sbjct: 141 ----------------RILVDRLMQQEVENR---------------VHIGPDEVKTFAQQ 169 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K E +S+ L + + V Sbjct: 170 LK------EMGGVSFDLQQIFIPLPDNPTPDA------------------------VGAA 199 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +++A++A + G++F ++A + +L LG +P ++A ++ L K G Sbjct: 200 RRDAEQARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELP-PAVAQTLLQL-KVG 257 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + +PVI G G+ I + ++K + I + + ++ + + +++ L Sbjct: 258 EISPVIPGPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQALQ 317 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 GT E++R G G+ L R P + Sbjct: 318 SGTRFSELARSYSQDPRTAANGGEMGWVAPGQ-------LPDSLERTLLTLQPGGVSSPI 370 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 + + Y+ S R + +EE + + V + ++ Sbjct: 371 RVGNAIYIL----HSQAQRQQAVEE--KQIMAAARMQLYNRIVHERMDE 413 >gi|284043450|ref|YP_003393790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei DSM 14684] gi|283947671|gb|ADB50415.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei DSM 14684] Length = 379 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 52/436 (11%), Positives = 123/436 (28%), Gaps = 137/436 (31%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58 M IR A ++ P + G D+ + S+ + SV V + + + Sbjct: 1 MAHSIR------AALTVGALVLCPLAVSACGGDDSSGNDVPSNAIASVDGTPVTKAEYEH 54 Query: 59 SWKQELGMISQKIGFVVNSERARS--------------------------------VGLD 86 ++ + V+ + + L Sbjct: 55 LYEVNAKGAAGGGSAVIPDPPSYTACAARLARQAAAARGRGRPTESQLVAQCRQLDEALR 114 Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146 + + LV LD E +G+E V + F + L + G+ Sbjct: 115 NRSVAQLVQMVWLDGETERLGIEVTDADVERAKRAT--FPRAGDM------QRTLRQLGM 166 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 E++ T + + R Sbjct: 167 TERDVEFQLRFNQLSTRLTEHL-------------------QRR--------------PV 193 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 D +A ++ ++ + ++ + PE + + Sbjct: 194 DVGDAEISAYYARNREQFAVPERRDLEL-------------------------------- 221 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGK---------KFIQLAEEQGKSLSDISLGSFSK 317 ++ + +A++A ++++ G +L++ G L ++ G + Sbjct: 222 --------ILTRTETQANDAKRAVEGGTAWAAAARRWSTDELSKGNGGRLLGVARGQQDR 273 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D+ A++G + G FG+ + V+ + PS + E I +R Sbjct: 274 AL-------DAAAFDARRGVLLGPVRGQFGWYLVRVTRVTPSKQSTLAESSAQIRELVRQ 326 Query: 378 TKASEKVKEDYKRLEE 393 ++ ++E + +E Sbjct: 327 QESQRAMQEYARTFQE 342 Score = 37.3 bits (85), Expect = 8.7, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 17/42 (40%) Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 + V++ P++ L E +++ + ++ + A Sbjct: 296 GWYLVRVTRVTPSKQSTLAESSAQIRELVRQQESQRAMQEYA 337 >gi|317495597|ref|ZP_07953965.1| ppic-type ppiase domain-containing protein [Gemella moribillum M424] gi|316914411|gb|EFV35889.1| ppic-type ppiase domain-containing protein [Gemella moribillum M424] Length = 308 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 112/340 (32%), Gaps = 90/340 (26%) Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 E + L K ++ LD++ I +A ++ + + F Sbjct: 44 ESIGASQLSKTATSMMIQKVLLDKYKGKIDEKAIEEQLQKA-------QTQYGG--KEKF 94 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 L ++G +Y D ++T ++ + G Sbjct: 95 EQLLKQQGFTLDKYKDGLKVKAAQTLLINDYTGT-------------------------- 128 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 + L + +EK K Y +++IL V +S+++ Sbjct: 129 -----------NEDKLKENYEKNKHQY------HLAHILISVKSNSNPNGLSDED----- 166 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLG 313 +K+A+E + +K G+ F LA+E + LG Sbjct: 167 ---------------------AKKKAEELHKKIKDGEDFATLAKENSNDTANASNGGDLG 205 Query: 314 SFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 SKE ++ ++L K + V+ SFGY I V + K + +F E+K +A Sbjct: 206 WSSKEDNSFVKEFKEAAYALTKD-KVSDVVKTSFGYHIIKVLDEKDA---TFDEMKATLA 261 Query: 373 NQMRITKASE---KVKEDYKRLEEFLALGTSMDEISRREK 409 + + V + K+L E + +S ++ K Sbjct: 262 EKAAEEAVKKDSTVVSKALKKLFEEYNVKSSNKDVEAYLK 301 >gi|87119766|ref|ZP_01075663.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121] gi|86165242|gb|EAQ66510.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121] Length = 416 Score = 91.2 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 45/353 (12%), Positives = 109/353 (30%), Gaps = 63/353 (17%) Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 + ++IL+ +++ + +G+ + K LA+ Sbjct: 61 NVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAA----KMKLDLAGLKVALAQ 116 Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLL------DQAKRFYFENRSVDYIV 196 +GI+ Y + + V G V + S+ + D+A + + +I+ Sbjct: 117 QGIDYSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKNNDQVHLRHIL 176 Query: 197 LNNRH--------VPAIADPSNAVLTQWFE---KYKDNYRAPEYKRISYILFD--VHEKE 243 + + + +N + + Y A E + + + Sbjct: 177 IRDNASSQSADQILTIKEKITNE--QDFIDQAIAYSSGQAALEGGDLGWRPLNQLPLLFI 234 Query: 244 KKIEISNDELQAEYEKNKEKY------------FSPEIRTVEQLVFP---------NQKE 282 K + +N L E + ++ E ++ + Sbjct: 235 KSLNANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSANEIRNQTQTKAA 294 Query: 283 ADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 + +Q L KG+ F LA+E +G +L L +K + ++ G+ Sbjct: 295 LEAIYQRLMKGQDFATLAKEFSEDKGSALKGGDLDWTAKGTMV-PEFE-AVMKATSVGEI 352 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +G+ I V + +DI+++++ A + + L Sbjct: 353 SKPFRSQYGWHILKVEGRR----------SQDISDKIKQVNAKNTLIARKQDL 395 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 93/305 (30%), Gaps = 45/305 (14%) Query: 153 DHYTKMLSRTDVVGMFVG------GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 D+ + + + G+R S +QA +D L Sbjct: 60 DNVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAAKMKLDLAGLKVALAQQGI 119 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 D YR I ++I IS+ E++ ++ + Sbjct: 120 D-------------YSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKN 166 Query: 267 PEIRTVEQLVFPNQKEADEAFQ------SLKKGKKFIQLAEEQGK---SLSDISLGSFSK 317 + + ++ + + A Q + + FI A +L LG Sbjct: 167 NDQVHLRHILIRDNASSQSADQILTIKEKITNEQDFIDQAIAYSSGQAALEGGDLGWRPL 226 Query: 318 EYIPDVSLADSIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK------- 369 +P + + SL A G I S G + + K + ++ K Sbjct: 227 NQLPLLFIK----SLNANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSA 282 Query: 370 -DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 +I NQ + A E + + + ++F ++ + +K ++ +D+ K Sbjct: 283 NEIRNQTQTKAALEAIYQRLMKGQDF----ATLAKEFSEDKGSALKGGDLDWTAKGTMVP 338 Query: 429 EVAAI 433 E A+ Sbjct: 339 EFEAV 343 >gi|281425607|ref|ZP_06256520.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302] gi|281400194|gb|EFB31025.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302] Length = 713 Score = 91.2 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 91/725 (12%), Positives = 196/725 (27%), Gaps = 133/725 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR S+ + + F+ +A S + V V +K+ + F Sbjct: 4 LGKIR--SKGAFLMGIIGLGIFAFI---AEEAFRSCESTRNNARQQVGEVLGEKINVNEF 58 Query: 57 INSWKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + +I Q+ +N E+ + + + V ++ + +GL + Sbjct: 59 QKLVDEYTEVIKMQQGAEALNDEQLNQ--VKDMVWNTFVQTKIVEHEAKQLGLRVTDAEL 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYI-------- 152 + ++P + + +F + LA ++Y Sbjct: 117 QNVLKAGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDTQRSANPQMAQQYETIYKYWTF 176 Query: 153 --DHYTKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRFYFENRSVDYIVLN 198 + L + + + + Q F + + D + + Sbjct: 177 IEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFKEENNESNIQLAAFPYSSIQDDKVQIT 236 Query: 199 NRHVPAI-----------------------ADPSNAV---LTQWFEKYKDNYRAPE---- 228 + A PS A L + F Y + + E Sbjct: 237 ESDLKAKYDELKPRFQQYVESRDIKYVDFQVTPSAADKNALQKEFAGYAKDLASAEDPSA 296 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNK----------------------EKYFS 266 R S L + ++ A+ + K Sbjct: 297 VVRKSSSLVNYLGIPVGKTAFPSDIAAKLDSMAVGHTSGVIENTMDNTLNVIRLIAKQQL 356 Query: 267 PEIRTVEQLVFP------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 P+ Q+ K AD + +LK G F +A++ G++ + + Sbjct: 357 PDSIEYRQIQVGGASADVAHKSADSIYAALKAGADFEAVAKKYGQT---GQKAWMTTQQY 413 Query: 321 PDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 D + ++ + ++ G +I V + K V I Sbjct: 414 QSAPSMDNDTKNYITSLNMMAVNETKNIVL-PQGNIIVQVLSRKAMTDKYIAAV---IKK 469 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + ++E + Y + F++ + DEI + + + +A I Sbjct: 470 NIVF--SNETYSKAYNKFSSFVSANQTGDEIIKNAAKNGYRVQEANDI--TTAQHYLANI 525 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWK 491 L +F + + + + P R L+ +V VK + Sbjct: 526 HGTRDALKWLFEAKQGAVSQMYTCGDNDHLLVAVLTKIHPVGYRSLDDSQVKEMVKAEVM 585 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 K AE + SK N V + + + + Sbjct: 586 KDKKAEMLMSKLNG-VSTLAAAKAKGAKVADVNQVTFAAPVFVTLTGASEPALS----GA 640 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 V++ ++ +F+VTN + P + DK + + + + L Sbjct: 641 VYATAKGKFSTKAVKGNAGVYMFQVTNKTMRPGKFDDKTMEQKLRQKTMQYAGNFMNELY 700 Query: 612 SQYSV 616 V Sbjct: 701 INAKV 705 >gi|311104694|ref|YP_003977547.1| PPIC-type PPIASE domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310759383|gb|ADP14832.1| PPIC-type PPIASE domain protein 1 [Achromobacter xylosoxidans A8] Length = 258 Score = 91.2 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 4/158 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297 + + K +S+ ++ AEYEK K++ V ++ ++K A++ +K K F Sbjct: 99 MADYLAKHPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQIKSNKSKFN 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ K G ++ A ++ L K + FG+ I V Sbjct: 159 DLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQLKKGELVDKPVQTQFGWHIIMVD 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +P +V+ + +R ++ KE ++ + Sbjct: 219 DTRPVEFPPLDQVRPQLEEMLRQQTLADYQKELREKAK 256 >gi|37524613|ref|NP_927957.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus luminescens subsp. laumondii TTO1] gi|81707805|sp|Q7N8V5|SURA_PHOLL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|36784037|emb|CAE12906.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase surA) (PPIase) (Rotamase C) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 433 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 119/401 (29%), Gaps = 66/401 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V S N + + +Q G + E+ L +IL+ L+ L Q Sbjct: 29 AAVVNNGVVLESDINNRLQS-VKRDAQHAGQQIPDEQ----TLRHQILERLIIDNILLQM 83 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + +G+ + IA N + D R+A +G+N Y D K + Sbjct: 84 AKQMGITIPDQALDSTIANIAA----QNHITVDQMKHRIAADGMNFDTYRDQIRKEMLIA 139 Query: 163 DVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 +V + +D + +N + + +++ +P +P A + + Sbjct: 140 EVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNISHILIPLPENPDQAQMEKAMTVV 199 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---- 268 + + + + + + EL + + + Sbjct: 200 QKI-MSELKHGVDFGKLAIAYSADPQALKGGNMGWSRLQELPTLFAEQLQLAQKGAVVGP 258 Query: 269 -------------------------IRTVEQLVFPN-----QKEADEAFQSLKKG----- 293 ++ +A Q + Sbjct: 259 IRSGVGFHILKVNDIRGGNPTIAVTEVHARHILLRTSPVMTDDQARTKLQQIASDIRSGK 318 Query: 294 KKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F A+E G +L LG + I D + D++ L KG+ + +H SFG+ Sbjct: 319 TDFADAAKEFSDDPGSALRGGDLGW-TAPDIYDPAFRDALMRL-NKGEISQPVHSSFGWH 376 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + + + + K + K +E+ + + Sbjct: 377 LIQLLDTRKVDKTDVAQ-KDRAYRMLFNRKFTEEAQSWMQE 416 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 D YR K + +E +++ I E+ A ++ + + + ++ P Sbjct: 124 NFDTYRDQIRKEMLIAEVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNISHILIPL 183 Query: 280 QKEADEAF------------QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + D+A LK G F +LA + G+ + + +L Sbjct: 184 PENPDQAQMEKAMTVVQKIMSELKHGVDFGKLAIAYSADPQALKGGNMGWSRLQELPTLF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD-IANQMRITKASEKV 384 LA+KG I G+ I V++I+ + EV I + ++ Sbjct: 244 AEQLQLAQKGAVVGPIRSGVGFHILKVNDIRGGNPTIAVTEVHARHILLRTSPVMTDDQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + + K S D G P L R+ Sbjct: 304 RTKLQQIASDIRSGKT--DFADAAKEFSDDPGSALRGGDLGWTAPDIYDPAFRDALMRL 360 >gi|317008847|gb|ADU79427.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori India7] Length = 299 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E ++++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIDQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y+ NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYDANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|300871743|ref|YP_003786616.1| hypothetical protein BP951000_2140 [Brachyspira pilosicoli 95/1000] gi|300689444|gb|ADK32115.1| hypothetical protein BP951000_2140 [Brachyspira pilosicoli 95/1000] Length = 489 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 124/365 (33%), Gaps = 69/365 (18%) Query: 8 ASRTWVAKIF--LV------VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56 ++ V K L +L V FL+ + T+ SV + S + Sbjct: 10 KKKSPVVKTLQWLGVSAVSILLIVYFLVI----DTRGSQKTPTIGSVNGTPIYYTSTSPY 65 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +++ E+ Q+ G +N++ ++ V+ LD + + Sbjct: 66 GKAFR-EIENYYQQFGIPMNADI--YANIEDLAFRRAVTTILLDDLAAK-NITVSDKIIL 121 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPS 175 + F + ++ + + + +EK I+ K + + ++ + Sbjct: 122 QYMQS--QFIDSNGNYNQMAYDAFIKNTPQSEKIRIEKDLKETVMAQTIALELFNSVKIN 179 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 +L L++ R ++ + ++ + AD + ++F K N+ IS+ Sbjct: 180 SLELERQYIKNLTKRDIEMLYIDASEIVKNADILETDIDKYFNDNKTNFV---QADISW- 235 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 ++ N K+A+ +++LK Sbjct: 236 ---------------------------------------ILLANAKDAENVYKTLKNDIT 256 Query: 296 -FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAH 352 F + E+ +D LG ++ I D ++AD +F+ + I+ + Y + Sbjct: 257 LFDKTVAEKSIYTNDYHLGYVTRMEI-DKNIADRVFTNTQITTNTLLSPINVNGVYYVVL 315 Query: 353 VSNIK 357 V++I+ Sbjct: 316 VNDIR 320 >gi|261414929|ref|YP_003248612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371385|gb|ACX74130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327509|gb|ADL26710.1| peptidyl-prolyl cis-trans isomerase SurA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 427 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 62/476 (13%), Positives = 136/476 (28%), Gaps = 88/476 (18%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V + + S F+N+ + + + +L+ ++ L Sbjct: 28 AAVVDGKPIMRSEFMNNLYR--------FQDTPEAASMTEQQQKEAVLNRMIEEKVLLSR 79 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSR 161 I+ + V + K + + G++ +Y + K + Sbjct: 80 IDRDSIVISENEVDQRVTSHLQSIAASQKIDMATLEKAVRAQLGLSMIQYREQLGKQIRS 139 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + R + ++ P+ + +++ YK Sbjct: 140 HMEISRV---------------------RQLHVGTIH---------PTKKEVDVFYKDYK 169 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 D+ ++ + +L + K + +V + Sbjct: 170 DSL----PRQFNCVLLSHIQLPIKPD-------------------------SMIVDSVKH 200 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 A+ SL G KF LA+ + LG F + + D + +I L Sbjct: 201 VAEALIDSLNLGIKFELLAQRHSQDSTAAKGGDLGYFKRGLL-DPAFEKAIERLKNGHYA 259 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + G+ IA V K S + + + K S V L + Sbjct: 260 STPVKTDLGWHIARVLGRKEDGVRS----AQILLRTIPTAKDSAAVLALADSLRNNI--- 312 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 S DE ++ K S D G + P + + + + + Sbjct: 313 KSKDEFAKAAKKFSEDKSSNFQGGLLGWFQRNEMEPAYVDPVANL-----NVGEISEPVM 367 Query: 459 PDGSYMWVQIKESIPARDRKLEE----VLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 DG+Y ++ +S R+ LEE + + K + + ++++E Sbjct: 368 IDGAYHLFRLDDSRQVRELTLEEDYGKIELMAATHLENEKLQKLIQKWRKEVLVEI 423 >gi|257453206|ref|ZP_05618505.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_5R] gi|317059740|ref|ZP_07924225.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313685416|gb|EFS22251.1| predicted protein [Fusobacterium sp. 3_1_5R] Length = 549 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 83/567 (14%), Positives = 194/567 (34%), Gaps = 91/567 (16%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57 IRK + + K+ + ++ + + G S + + +KV Sbjct: 2 AIRKFRK--IMKLVIFIVAIAMIGSGAWLTFTNLLQHHSAGETQYAYQLNGEKVSKVKIA 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + +++ G S+ S+ +++ Q ED+ ++ + Sbjct: 60 REENNLMEQLNKM-GQGKTSKELVSL----IAFQKVINDELTLQLAEDMKIKVPSSEIKE 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-- 175 E + +++ + + F L+ +G ++K + + L V+ F + S Sbjct: 115 EYEK-----IENSIGNKEQFKRMLSVQGYSKKSFKAMLEENLLLQKVMEKFAEEAKKSGK 169 Query: 176 -------NLLLDQAKRFYFENRSVDYIVLNNRHVPAI----------------------- 205 L + + S +Y L + V Sbjct: 170 DGNLLFQEALAKKRNEMKIDKLSPEYEKLQLKVVEEKDGFKITNVDMADRVTQLMLMTGE 229 Query: 206 --ADPSNAVLTQWFEKYKDNYRAPEYKRI------------SYILFDVHEKEKKIEISND 251 A + V Q+ E +A E + Y + + +++I Sbjct: 230 EEAKVTEEVKKQFEEGIAFAKKAQEKGVLISKDLPINVQLAEYGKAFFEKLKSEVKIDEV 289 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKKGKKFI---- 297 EL ++ N +Y V+ V +K+A+E +SLKK + F Sbjct: 290 ELSRFFQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKAEETLKSLKK-ENFAKIGA 348 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++ +++ LG F K + ++ FS + + VI FG + ++ ++ Sbjct: 349 DLQKKSPETVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQ 407 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + + + +++A+Q I K+ ++ + ++L++ ++ I++ + + Sbjct: 408 ENKVKAAHILFREVASQASIDKSLKEAESIKEKLDKKEVTFETLKNINKNL-LFAHTFTG 466 Query: 418 VDFAG---KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 VD +G V K + Y ++ DD K + L + Sbjct: 467 VDKSGVIQGFVTDKALVDTMYAAEMNKVQIYSDDYAKKAGIIYL-------FSKTKQEED 519 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + LEEV V+ ++++ + +E+ Sbjct: 520 KIVSLEEVQDRVRDEYRSWRAQQELQK 546 >gi|91204225|emb|CAJ71878.1| similar to peptidyl-prolyl cis-trans isomerase [Candidatus Kuenenia stuttgartiensis] Length = 311 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 75/328 (22%) Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 ++ +++ + ++I++ L++ L+ FI+ G+ + E+ D Sbjct: 49 RLNMFKDADVETYNAIRQEIIEQLITDILLEDFIDKQGIVVTPMEMSRELLLIKK-EIAD 107 Query: 130 NKFSHDVF-VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 N+ D F LA G N ++ L+ + Sbjct: 108 NEGEADAFLRDMLASIGSNLYDFEKTIKHSLALEKYFKGSLDS----------------- 150 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 L ++FEK K ++ E R+S+I D + + Sbjct: 151 ----------------------QNLKRFFEKNK-HFFNGEAVRVSHIFIDTKKFNSGDMV 187 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---K 305 V QL+ + L KG F +LA E Sbjct: 188 E---------------------KVAQLI-------NTLKSELDKGSDFEELAREYSDCPS 219 Query: 306 SLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG + D + FSL + G + + +GY + V+ K V+F Sbjct: 220 ASKGGDLGFIQRRGGTYDEPFLSTAFSL-RIGKVSEPVKSEYGYHLIKVTGKKEGVAVNF 278 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392 ++V D+ + M + +K + Sbjct: 279 EDVIDDVRSTMLDEEILGLLKRLRSEAK 306 Score = 43.4 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLG--ASLLTTNQINRMDNENKFFGYDGISQV 552 E+V+ N L E K G +F ++ + S + + + +S Sbjct: 186 MVEKVAQLINTLKSELDK-GSDFEELAREYSDCPSASKGGDLGFIQRRGGTYDEPFLSTA 244 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 FS + V P+++ Y + KVT K G + I + M + + ++ L+S Sbjct: 245 FSLRIGKV-SEPVKSEYGYHLIKVTGKKEGVAVNFEDVIDDVRSTMLDEEILGLLKRLRS 303 Query: 613 QYSVTVHD 620 + + + Sbjct: 304 EAKIEIIQ 311 >gi|320105835|ref|YP_004181425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] gi|319924356|gb|ADV81431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus saanensis SP1PR4] Length = 645 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 108/350 (30%), Gaps = 75/350 (21%) Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 Q + S +Q + Q + + K +L +L+ L +++ Sbjct: 87 NDQIISRSDVERQEQQLQAELRQGGAQAGDPAERQ-----KNMLRDLIDQQLLLSRGKEL 141 Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 G+ + I R +++ S + +G++ +++ Sbjct: 142 GIT-GDTEL---IRRLDDIRKQNHLDSMEDLEKAARAQGVSFEDFKAQIR---------- 187 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + S+++ D+ R + A ++++ +KD + Sbjct: 188 ---NSIITSSVVRDEVSRHLQM--------------------TQADERKYYDAHKDQFAQ 224 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 E R+S IL + I+ Q +A+E Sbjct: 225 QEQVRLSEILIPLPADATDAAIA----------------------------QAQAKAEET 256 Query: 287 FQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F +A+ + LG F + + L + F L K GDFT I Sbjct: 257 AAKIRAGAAFADVAKTTSGGPTAAQGGDLGFFKRGGLA-PVLEEKTFPL-KVGDFTAPIR 314 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G+VI + + + +V + + M + ++ L E Sbjct: 315 TRQGFVILQATEHQEAGVPPLAQVDQQVQEAMYQDQMQPALRAYLTHLRE 364 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 5/124 (4%) Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564 + + G F D+ K + + + F V P Sbjct: 254 EETAAKIRAGAAFADVAKTTSGGPTAAQGGDLGFFKRGGLAPVLEEKTFPLKVGDF-TAP 312 Query: 565 IENGLSYVVFKVT---NSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHD 620 I +V+ + T + V P+ + D+ + + Q + L + + +L+ + + Sbjct: 313 IRTRQGFVILQATEHQEAGVPPLAQVDQQVQEAMYQDQMQPALRAYLTHLREDAYIDIKP 372 Query: 621 NLIQ 624 + Sbjct: 373 GFVD 376 >gi|304311712|ref|YP_003811310.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1] gi|301797445|emb|CBL45665.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1] Length = 439 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 54/398 (13%), Positives = 125/398 (31%), Gaps = 81/398 (20%) Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 + S +N +Q I+++ +E L ++L+ +++ + Q E +G+ Sbjct: 49 ILQSELLNRTRQIRIQIAKR-----GTEAPDEAKLQAQVLERMITESAELQLAEKMGVRV 103 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSRTDVVGMFV 169 D + +A + N S + F + + EG+ Y + + ++ + Sbjct: 104 DDNAINEALANI----ARQNNLSLEQFQNVIEHEEGMTFASYREQVRREMTAHQL----- 154 Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 + R V + S+ + + Sbjct: 155 ------------------QQRRV----------ASRIKISDQDIDAFLASDLGKENLAPD 186 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + +IL VH+ I + ADE ++ Sbjct: 187 YHLGHILIAVHDDSDAASIDQA----------------------------KAMADEVYRQ 218 Query: 290 LKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 LK G F A L LG +P AD + ++ + GD + I Sbjct: 219 LKSGADFAATAVRYSGDDKALEGGDLGWRKAGQLP-TLFADVVVNMHR-GDISAPIRSPS 276 Query: 347 GYVIAHVSNIKPSFTV--SFQEVKKDIA--NQMRITK-ASEKVKEDYKRLEEFLALGTSM 401 G+ I + + + +V+ + N++R A ++ +RL++ ++ Sbjct: 277 GFHIIKILETRGGTEMLVPQAQVRHILIKPNEIRSDADAHALAEDIRRRLQQNKGDFAAL 336 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + + +++ + + V E + E++ Sbjct: 337 AKTYSDDTGSALEGGSLGWVNPGVMVPEFEKVMNSEKI 374 >gi|187251884|ref|YP_001876366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium minutum Pei191] gi|186972044|gb|ACC99029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium minutum Pei191] Length = 390 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 49/390 (12%), Positives = 115/390 (29%), Gaps = 47/390 (12%) Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 + + S F + + + + L+K++LD +++ L Q E Sbjct: 33 NGKPILQSDFDKVAGAFEAQYTAAAPK-LMEQPGVKLKLEKEVLDQMINDELLFQAAEKE 91 Query: 107 GLEADHGRVWGEIAR-----SPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 G++A + + + P K F + L +EGI++K++ D K Sbjct: 92 GVKAREDEIDEAVKQAKDALIPAADEKGKPISEKERTKQFDAALKKEGISQKQFRDKLKK 151 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V + V + A + Sbjct: 152 QIMSRKYVETAI--------------------------------VTKVKPVEEADAKALY 179 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 ++ K + K + ++ + I + ++L A + + + Sbjct: 180 DQVKAVMKKDSKKTALIKPEEHKKEVEAIAMRLEQLSAPKVRIGHIFLEAPKAAGADKIK 239 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333 + A E + + G F + + S G + FSL Sbjct: 240 EKEALAKEIKKKIDGGMDFSTAVRQFSDDKNSQSTGGDMILIKGAPNTPKEIDTKAFSL- 298 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G + I FG+ I + + +++++V ++ + + + E K L Sbjct: 299 DVGKVSDPIKTDFGFHIIKIKEKSAAEEITYEKVAREFGQYIAAQRIQVAINEHIKDLNS 358 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGK 423 + + D + + ++ K Sbjct: 359 KAEIKINKDFSALEKPAANVKEEPAKTEPK 388 >gi|317176991|dbj|BAJ54780.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori F16] Length = 299 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KKI+I E+Q Y NK+++F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQFFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289 >gi|15644804|ref|NP_206974.1| cell binding factor 2 [Helicobacter pylori 26695] gi|2499779|sp|P56112|Y175_HELPY RecName: Full=Uncharacterized protein HP_0175; Flags: Precursor gi|2313264|gb|AAD07245.1| cell binding factor 2 [Helicobacter pylori 26695] Length = 299 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E ++++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIDQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|258545949|ref|ZP_05706183.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis ATCC 15826] gi|258518827|gb|EEV87686.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis ATCC 15826] Length = 433 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 54/392 (13%), Positives = 122/392 (31%), Gaps = 59/392 (15%) Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 V + + + + +++ + L+ ++L++++ L Q + Sbjct: 46 VNDEAITRRQLTQEIEAARRNLPKELKLP-------AGELEHQLLEHVIMNHLLAQIEKK 98 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 +GLE + IA+ G++ ++ G++ + + K L++ + Sbjct: 99 VGLEISEDELNTAIAQIA---GRNKVSEQKLYAQAQRDTGLSRDAFREQVRKSLAQEHMK 155 Query: 166 GMFVGG--MRPSNLLLDQAKRFYFENRSVD-----YIVLNNRHVPAIADPSNAVLTQWFE 218 VG + + + E S I L + A +A + + + Sbjct: 156 EGMVGADINITERQVDEYIAKLAREQGSTIHVQDLLIPLPEGDAQSRAGEVDAKIREVSQ 215 Query: 219 KYKDNY------------------------RAPEYKRISYILFDVHEKEKKIEISNDE-- 252 +D+ R P + E + + +D Sbjct: 216 ALRDSGGNLQQASARVAGARYNDLGDVNLGRIPPRFARALAKLGAGEIVESPVVDDDGMH 275 Query: 253 -LQAEYEKNKEKYFSPEIRTVEQLVF--------PNQKEADEAFQSLKKGKKFIQLAEEQ 303 L+ + + E ++ V ++ ++ D ++ L+ G F LA Sbjct: 276 FLKVASKHSAEGNYTLAEADVSHILLRNNDGRDDNSKARIDAIYRELQAGADFASLARRY 335 Query: 304 GKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG S + LA +I G + I +GY I V + S Sbjct: 336 SEDAQSAAKGGDLGWVSADQFGG-ELAQAI-ETQAVGSISKPIKTPYGYHILLVRERRQS 393 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 S V++ I + E ++ + L Sbjct: 394 -DKSEAVVREQIKRNLYAKALDEAWQQRLQSL 424 >gi|117617860|ref|YP_855486.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559267|gb|ABK36215.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 432 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 56/432 (12%), Positives = 134/432 (31%), Gaps = 60/432 (13%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K + +L A + V++V + V +S + Q++ +Q+ G Sbjct: 3 KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKASAQESGQS 62 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + L K+ LD L+ + Q + GL+ ++ I DNK + Sbjct: 63 LP----DDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAA----DNKMTL 114 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 D ++LAREG+ +Y + + + +V + S + Q + Sbjct: 115 DQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVDILAKQGQQQ 174 Query: 194 YIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----KRISYILFD---------- 238 + + V +PS L K + A + ++++ Sbjct: 175 QQYHVGHIQVALPDNPSAEQLNAAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDW 234 Query: 239 --------VHEKEKKIEISND-------------ELQAEYEKNKEKYFSPEIRTVEQLVF 277 + ++ + + ++ ++ ++ Sbjct: 235 GWMSPQEMPTLMAEAVQGTKKGDIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARHILI 294 Query: 278 P-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324 ++++A D +K GK F LAE+ + G +S + Sbjct: 295 KPSIILSEEKAKGMLDGILHDIKSGKASFASLAEKYSEDPGSAVQGGELGWSDPNVYVPE 354 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D + L + G + + G+ I + + + + ++ + + +E+ Sbjct: 355 FRDMVNRL-QPGQISEPFRTTHGWHIVQLEERRSQDATNKAQ-EQRAYQLIYNRRFTEES 412 Query: 385 KEDYKRLEEFLA 396 + L + Sbjct: 413 QAWLDELRDEAY 424 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 22/224 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR + I ++ ++I IS E++ + ++ + V + Sbjct: 129 AQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVDILAKQGQQQQQYHVGHIQVALPD 188 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326 + + + +LK+G F ++A + K+L G S + +P +L Sbjct: 189 NPSAEQLNAAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDWGWMSPQEMP--TLM 246 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381 KKGD + G I V + K V EV+ I + KA Sbjct: 247 AEAVQGTKKGDIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARHILIKPSIILSEEKAK 306 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 + ++ A S+ E + ++ + ++ +V Sbjct: 307 GMLDGILHDIKSGKASFASLAEKYSEDPGSAVQGGELGWSDPNV 350 >gi|308063037|gb|ADO04924.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Sat464] Length = 299 Score = 91.2 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|153809257|ref|ZP_01961925.1| hypothetical protein BACCAC_03569 [Bacteroides caccae ATCC 43185] gi|149128027|gb|EDM19248.1| hypothetical protein BACCAC_03569 [Bacteroides caccae ATCC 43185] Length = 713 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 89/710 (12%), Positives = 207/710 (29%), Gaps = 134/710 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---- 117 + ++ G ++ ++ + ++ + V+ +++ E +GL + Sbjct: 61 EYTEVVKLMRGVTALNDE-QTSQVRDEVWRSYVNNKLIEKEAEALGLTVSTAEIQDILKA 119 Query: 118 ----EIARSPLFHGK-DNKFSHDVFVSRL---AREGIN--EKEYIDHY----------TK 157 + ++P F F D+ L A+ + +Y + Y K Sbjct: 120 GVHPLLRQTP-FQNPQTGNFDKDMLNKFLVEYAKMNESQMPAQYAEQYNNMYKYWSFIQK 178 Query: 158 MLSR---------------------------------TDVVGMFVGGMRPSNLLL----- 179 L + ++ + ++ Sbjct: 179 TLIQSRLAEKYQALVSKALISNPVEAQDAFDARVNQYNMLLAAVPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E R + YI + + + D + L + Y + Sbjct: 239 LKDLYNKKKEQFKQYQETRDIKYIDVQVTASAADRAAIQKEVDEATEQLATTTDDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + + Y K K + Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYYNGGDNTINSFKIVAKTAAA 357 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEY 319 + Q+ + AD + ++K G F++LA++ G + ++ + Sbjct: 358 DSVEFRQIQVYAADAAKTKTLADSIYNAIKGGANFVELAKKYGQTGDSNWMTAAQYEGAQ 417 Query: 320 I--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376 I ++ +I S + + VI V+N K VK+++ Sbjct: 418 IDGDNLKFISAINSTGVNELVNLPLGQAN--VILQVTNKKAVKDKYKVAVVKREV----- 470 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + E Y +F+A S++++ + L +D A + + Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYKL--LDRADLYSSEHGIGGVRGT 527 Query: 437 EQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 ++ L F K P + M V + P R L+ V ++ + K Sbjct: 528 KEALRWAFDKAKPGEVSGLYECGESDHMMVVGLVNIKPEGYRPLKAVQEQLRAEIVKDK- 586 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF----FGYDGISQ 551 KA +++ + D K + ++ + ++ + Sbjct: 587 ------KAEKIMADMKAANATSLDQYKAMPNAVSDSLKMVTFAAPAYVSALRSSEPLVGA 640 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNK 600 S PI+ V +V K+ + LT M + Sbjct: 641 YASVAEVNKLSAPIKGNAGVFVLQVYGKDKLNDTFNAKDEEATLTNMHAR 690 >gi|330830997|ref|YP_004393949.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565] gi|328806133|gb|AEB51332.1| Peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565] Length = 434 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 59/432 (13%), Positives = 138/432 (31%), Gaps = 60/432 (13%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K + +L AL + V++V + V SS ++ ++ + +Q+ G Sbjct: 5 KTLIALLTAGMFGAMSQAALAAPELMDKVLAVVNKDVVLSSQQDALVNKVKLSAQESGQS 64 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + L K+ LD L+ + Q E GL+ ++ I DNK + Sbjct: 65 LP----DDATLRKQALDRLIQESLQLQLAERQGLKISDTQLEQAIQGIAA----DNKMTL 116 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKR-FYFENRSV 192 D ++LAREG+ +Y + + + +V + S + Q + + Sbjct: 117 DQLRAQLAREGMTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVEILKKQGQQQ 176 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----KRIS--------------Y 234 + + + + +P+ A L K + A + ++++ + Sbjct: 177 NEYHVGHIQIALPDNPTAAQLDAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDW 236 Query: 235 ILFDVHEKEKKIEISNDELQ-----------------AEYEKNKEKYFSPEIRTVEQLVF 277 E + + + ++ ++ ++ Sbjct: 237 GWMSPQEMPTLMAEAVQGAKKGDIVGPLRSGAGLHIVKVFDTKGQQQVMQTEVKARHILI 296 Query: 278 P-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324 ++++A D +K GK F +AE+ + G +S + Sbjct: 297 KPSIILSEEKAKGMLDGILHDIKSGKASFASMAEKYSEDPGSAVQGGELGWSDPNVYVPE 356 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D + L + G + S G+ I V + + + ++ + + E+ Sbjct: 357 FRDMVNRL-QPGQISAPFRTSHGWHIVQVEDRRSQDATDKAQ-EQRAYQLIYNRRFVEES 414 Query: 385 KEDYKRLEEFLA 396 + L + Sbjct: 415 QAWLDELRDEAY 426 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 22/224 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR + I ++ ++I IS E++ E K++ V + Sbjct: 131 AQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVEILKKQGQQQNEYHVGHIQIALPD 190 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326 + + + +LK+G F +LA + K+L G S + +P +L Sbjct: 191 NPTAAQLDAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDWGWMSPQEMP--TLM 248 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381 AKKGD + G I V + K V EVK I + KA Sbjct: 249 AEAVQGAKKGDIVGPLRSGAGLHIVKVFDTKGQQQVMQTEVKARHILIKPSIILSEEKAK 308 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 + ++ A SM E + ++ + ++ +V Sbjct: 309 GMLDGILHDIKSGKASFASMAEKYSEDPGSAVQGGELGWSDPNV 352 >gi|146299175|ref|YP_001193766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium johnsoniae UW101] gi|146153593|gb|ABQ04447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium johnsoniae UW101] Length = 699 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 94/729 (12%), Positives = 209/729 (28%), Gaps = 148/729 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L IR+ S + I L + F+I L S V S+ + + F F Sbjct: 4 LAKIRQRSALLIGVIALALFA--FIIQDLIGKGTFSQSSKDVGSIDGKDISFEDFRVKVS 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--- 118 +K G + S A + ++ D VS A L + +GL + Sbjct: 62 N-----LEKSGQGITSTEAAN-----RVWDQEVSIALLSAQFDKLGLRVGEKHLIEVLKS 111 Query: 119 ---IARSPLFHGKDNKFSHDVFV-----------------------------SRLAREGI 146 I ++P+F F F + L + G+ Sbjct: 112 DPNIGKNPMFLNAAGVFDVVKFKDYFKANPEAAQYISDKEKDAELNAKFQIYNTLVKSGL 171 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPS--------------NLLLDQAKRFYF-ENRS 191 + V + G + S + + K+F E R Sbjct: 172 YTTASEGKLKYEMEANKVNFAYAGALYSSIKDSEVKISDSDIVDYMKKNEKKFKADETRE 231 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQW------FEKYK-DNYRAPEYKRIS----YILFDVH 240 + Y+++ ++ A +T + N P ++ + ++ + Sbjct: 232 IQYVLVEDKASKQDEADIKAKITALLSGSVVYNAKTGKNDTLPGFRNATNIAEFVNANSD 291 Query: 241 EKEKKIEISNDELQA----------------------EYEKNKE-KYFSPEIRTVEQLVF 277 + + L A Y +K + + ++ Sbjct: 292 VPYDSTYVPKNALPAVDADKLFSLPAGAIYGPYVYGKYYAISKSLGFKAGVNAKASHILI 351 Query: 278 -------PNQKEADE----------AFQSLKKGKK-FIQLA---EEQGKSLSDISLGSFS 316 PNQKE ++ F+ LA + + LG F Sbjct: 352 GYEGSQTPNQKEKRTKEEAKAKAEEILAQVQSNPDSFMMLAFTSSDDSSAQQGGDLGYFG 411 Query: 317 KEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + + D +F + K G FG+ + +++ + + IA + Sbjct: 412 QGQMVKP-FNDFVFNNGIGKVGLV----ETPFGFHVIKITDKQDGIRL------ATIAQK 460 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + ++A+ + L + + + + K + + + ++ + Sbjct: 461 IEPSEAT---SDKVFTLATKFEMEAADKDFAATAKELGLKVE--GPVSAKAMDEQFGPLG 515 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 + ++ F K+ L + ++ Q K + + V+ K K Sbjct: 516 AQRNIVRWAFDKETDKGDVKRFELANIGHVIAQYKGENKSGLVSVTMARPYVEPILKNKK 575 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE-NKFFGYDG--ISQ 551 AE + +K G + + K+ G ++ + + G + + Sbjct: 576 KAEILKAKMT---------GSSIEAVAKSAGVAVQQAADVTLENPVLPGGVGQEPQVVGT 626 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 F+ + N YVV + K + ++++ + D ++ LK Sbjct: 627 AFALAANKLSAPIEGNTGVYVVKNIKTVKAPALTNHAEYVAKVKAQSASDA-GRILPALK 685 Query: 612 SQYSVTVHD 620 + + + Sbjct: 686 NNAKIEDNR 694 >gi|308061465|gb|ADO03353.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Cuz20] Length = 299 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|163938953|ref|YP_001643837.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4] gi|163861150|gb|ABY42209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus weihenstephanensis KBAB4] Length = 289 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 74/209 (35%), Gaps = 15/209 (7%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-YKDNYRAPEYKRISYILFD 238 E + ++ + V D + F+ K E + Sbjct: 51 QVLNNMVMEKVLIKNYKVDEKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRASL 110 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 E+ + I++ +L+A++E K + ++ +++ A + + L +GK F + Sbjct: 111 AQEQAIEKAITDKDLKAKFEDYK------QEIKASHILVKDEETAKKVKEELAQGKSFEE 164 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ + LG F + + ++ L KK + + + GY I V+ Sbjct: 165 LAKKYSEDPGSKEKGGDLGFFGPDKMVK-EFDEAARKL-KKDEVSEPVKTQHGYHIIKVT 222 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEK 383 +F + K DI + K + Sbjct: 223 ETHADA--TFDKAKADIKKEAVQEKTQDA 249 >gi|297379400|gb|ADI34287.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori v225d] Length = 299 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMIEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|119897994|ref|YP_933207.1| putative cell binding factor [Azoarcus sp. BH72] gi|119670407|emb|CAL94320.1| putative cell binding factor [Azoarcus sp. BH72] Length = 260 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 5/157 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + K +++ EL+ EY+ K + E + ++ +++ A E L G KF Sbjct: 104 LQDYVKNNPVTDAELKKEYDSIKSRMGDKEYKP-RHVLVESEEHAKEIIGKLNGGAKFDD 162 Query: 299 LAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA+E G LG + + +D++ L K + +G+ + + + Sbjct: 163 LAKESRDPGSKDKGGDLGWTTPDRFVKP-FSDAMVKLEKGKYTAAPVKSDYGFHVIMLDD 221 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 ++ F+EVK + +++ K + + + + + Sbjct: 222 VRELKAPPFEEVKPQLQQRLQQQKVEKHILDLRTKAK 258 >gi|94986747|ref|YP_594680.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis PHE/MN1-00] gi|94730996|emb|CAJ54359.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis PHE/MN1-00] Length = 308 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 109/356 (30%), Gaps = 85/356 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + TV V + + F + + Q++ +++A+ L+K IL+ ++S L Sbjct: 24 NKTVAVVNGEIITL--FDLQAETAPEIFRQQLNPNNPADKAKVEQLEKAILEGMISNLIL 81 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E + + V E ++ + + F +L + + E + + + Sbjct: 82 TQEAERLHVNVGKDEVESEYHNF----IAKSQLTPEEFQYQLELQHLTEDSFKERIRSSI 137 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R+ ++G VG + + +++K Sbjct: 138 LRSRLLGAMVG---------------------------------RKIVVTKKEIEDYYQK 164 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 D + + + LV+P Sbjct: 165 NHDKLK----------------------------------------NNNQLQLAILVYPP 184 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 A + +K G F ++ ++ K+ LGS E + L S K Sbjct: 185 DINAKDWAARIKSGSVSFEEVVKKVSVGPKAKEGGDLGSIDIEDLNPEWLEQ--LSTMKP 242 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ T +I + + NI + + + I +R K E+ KE +L Sbjct: 243 GEVTSLIDINGLQGQLKLINIIKGEPQTLETLTPYIEEILREPKLEERFKEYTDQL 298 >gi|315637996|ref|ZP_07893181.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21] gi|315481844|gb|EFU72463.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21] Length = 273 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 73/162 (45%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295 ++ + I++ +++ YEKNKE++ P + ++ +++EA LK K Sbjct: 104 NKIMQDIKVDAAKVKEAYEKNKEQFVKPARVKAKHILVTSEQEAKNIINELKGLKDKELE 163 Query: 296 --FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F ++A + G + + LG F + + D+ FSL K + +FGY Sbjct: 164 KKFTEIARTKSIDTGSAANGGDLGWFDESTMVKP-FTDATFSLKKGEITKTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I + + V+F++ K I N+++ + +++ + L Sbjct: 223 IILKQDSRAKEQVAFKDAKMGIENRLKFEEFQKRIALKGQEL 264 >gi|251788205|ref|YP_003002926.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya zeae Ech1591] gi|247536826|gb|ACT05447.1| Peptidylprolyl isomerase [Dickeya zeae Ech1591] Length = 430 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 63/411 (15%), Positives = 132/411 (32%), Gaps = 68/411 (16%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 + + +V V S INS Q + + +Q+ G + L +IL+ L+ + Sbjct: 26 NKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLP----DDATLRHQILERLIMDNIIL 81 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + +G++ ++ IA N+ S D SRL EG++ Y K + Sbjct: 82 QMAQKMGVQVTDEQLDRSIANIAA----QNRMSIDQLRSRLTAEGVSFDTYRGQIRKDMI 137 Query: 161 RTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 DV + +D + + + + L+ +P +P+ + + E Sbjct: 138 IADVRNSEVRRRVTVLPQEVDSLAQQLASQGANGPEVNLSQILLPLPENPTQDQVDK-AE 196 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKN---------- 260 + + + + + EL + + Sbjct: 197 SLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPTLFAERLTNPQKGQIV 256 Query: 261 -------------------KEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKK 292 + S ++ + + +E +K Sbjct: 257 GPIRSGVGFHILRVNDTRGGAQAVSVTEVHARHILLTTSVVMNDAQARAKLEEVAGQIKS 316 Query: 293 GK-KFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 GK F QL+++ G + LG S E + D + D++ L KKG+ + +H SFG Sbjct: 317 GKLSFANAAKQLSQDPGTANQGGDLGWASPE-MYDPAFRDALTQL-KKGEISTPVHSSFG 374 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + + + + + R+ + +E ++E A Sbjct: 375 WHLIQLLDTREVDKTD----AAQKERAYRMLFNRKFAEEAQTWMQEKRAAA 421 >gi|222839387|gb|EEE77724.1| predicted protein [Populus trichocarpa] Length = 235 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 6/155 (3%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E YK + LF + +KK +++ E +AEY+K E + ++ Sbjct: 59 EAYKQQLELARQTILIRALF--EDFQKKNPVTDAEAKAEYDKAVAANSGKEYK-ASHILV 115 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334 ++ A +K GKKF +A+++ K + G P ++++ L K Sbjct: 116 ESEDRAKAIIAEIKAGKKFEDIAKKESKDPGSGARGGDLDWANPGNYVPEFSEALIKLEK 175 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G + FGY I + + + + F+EVK Sbjct: 176 GGMTQEPVKTQFGYHIIRLDDARQAELPKFEEVKP 210 >gi|111114930|ref|YP_709548.1| basic membrane protein [Borrelia afzelii PKo] gi|216263862|ref|ZP_03435856.1| basic membrane protein [Borrelia afzelii ACA-1] gi|110890204|gb|ABH01372.1| basic membrane protein [Borrelia afzelii PKo] gi|215979906|gb|EEC20728.1| basic membrane protein [Borrelia afzelii ACA-1] Length = 336 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 57/408 (13%), Positives = 132/408 (32%), Gaps = 84/408 (20%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K FL ++ + + + S + ++ V + + + +SF + + + + Sbjct: 1 MKSFLFLVILGTVG------INSFAQNTPVAIINLYKNEIITKTSFDSK----VDIFKKT 50 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + + K++L L++ Q G++ V I F + Sbjct: 51 QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 F+ + + ++G N E + + LS +V + R Sbjct: 102 -FTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLVLK------------------QAQPR 142 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + PS + +++E K + P+ R+S++ F +K++ + Sbjct: 143 -----------FSEVKTPSEKEIIEYYEANKTRFVNPDISRVSHVFFSTKDKKRSDVLDQ 191 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 KN +++ F +EA + + ++ + L + Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 S + + + +F+ KGD + I G+ I V+ + + Sbjct: 230 SRDDQNAQNLLGPDFIKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSP 288 Query: 367 -----VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 VK I N M + + V + + + L S+ + K Sbjct: 289 ATDLIVKDAIRNNMVNIQQQQIVVQVQQDVYGKLNKSASIQILDSSLK 336 >gi|311696171|gb|ADP99044.1| survival protein surA [marine bacterium HP15] Length = 446 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 57/426 (13%), Positives = 124/426 (29%), Gaps = 65/426 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + G + + L++++LD L++ + Sbjct: 32 DQVVAIVDEDVILQTELEARINTITSRLGAQ-GTALPPRQV----LEERVLDQLITESIQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + +A + N S F ++L EG+ + + K + Sbjct: 87 MQMADRAGMRISDNELNETMANI----AERNGMSLPQFENQLEAEGVTYNQAREQIRKEM 142 Query: 160 SRTDVVG-MFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + V +R ++ ++ +A+ + YI ++ A+ A Sbjct: 143 LTSRVQQRQVGNRVRVTDREVENYLESLEARGGNNAQYRLAYIFVSVDDPSDEAEVDAAR 202 Query: 213 LTQWFE----KYKDNYRAPEYKRISYI------------------LFDVHEKEKKIEISN 250 ++R L E + + Sbjct: 203 EKAERLRSEIANGRDFREVAVAESDASNALEGGDMGWRAEGQLPSLVAPVVPELPVGEPS 262 Query: 251 DELQAEYEKN---------KEKYFSPEIRTVEQLVF-----PNQKEADEA----FQSLKK 292 D L+ + E+ + V ++ +A+ +Q L+ Sbjct: 263 DVLENNSGFHLVMVMDKRGGEQQQMIQQHRVRHILVRPSEATTDSQAETVIRDLYQQLQN 322 Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F LA E +LG S + + ++ A G+ FG+ Sbjct: 323 GASFSALAREYSDDPVSGSDGGNLGWVSPGQMV-PAFEQAMLD-ADIGELRGPFRSQFGW 380 Query: 349 VIAHVSNIKP---SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 I V + S V E ++ I + T+ ++E + DE + Sbjct: 381 HILQVQERRQKDISGDVRDAEARQAIYRRKFETELQNWLQEIRDEAFVEFKGEYAKDEPA 440 Query: 406 RREKIV 411 E + Sbjct: 441 EEEPVS 446 >gi|51598371|ref|YP_072559.1| basic membrane protein [Borrelia garinii PBi] gi|51572942|gb|AAU06967.1| basic membrane protein [Borrelia garinii PBi] Length = 336 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 53/374 (14%), Positives = 122/374 (32%), Gaps = 84/374 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K FL ++ + I G++ S + ++ V + + + + F + + + + Sbjct: 1 MKSFLFLVILG--IMGIN----SFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + + K++L L++ Q G++ V I F + Sbjct: 51 QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + + + ++G N E + + LS +V Sbjct: 102 -LTDEQIKQMIEKQGTNWGELLASMKRSLSSQKLV------------------------- 135 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + + PS + +++E K + P+ R+S++ F +K++ + Sbjct: 136 ----LKQSQPRFSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHVFFSTKDKKRSDVLDQ 191 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 KN +++ F +EA + + ++ + L + Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 S G + + + +F+ KGD + I G+ I V+ + + Sbjct: 230 SRGDQNAQNLLGADFIKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288 Query: 367 -----VKKDIANQM 375 VK I N M Sbjct: 289 TTDLIVKDAIRNNM 302 >gi|114319362|ref|YP_741045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola ehrlichii MLHE-1] gi|122070615|sp|Q0AC82|SURA_ALHEH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|114225756|gb|ABI55555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola ehrlichii MLHE-1] Length = 433 Score = 90.8 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 45/407 (11%), Positives = 118/407 (28%), Gaps = 62/407 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V Q V S + + G + +++L+ L++ Sbjct: 32 DRIVAVVDDQVVLASELERELATIANQLRSR-GQRLPPRDV----FQRQVLERLITQRVQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +G+ D + + R + N + F + +EG + + + + Sbjct: 87 LSRAQRVGITVDDATLDAAMQRM----ARQNNMTLGQFRQAVEQEGFEYNYFREGIREEI 142 Query: 160 SRTDV-VGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + + + + + +++ + EN+ + A + + Sbjct: 143 AISRLRQAQVEEQVTVTPQEVEEVLETLDDENQEYRLGHILVATPEAASTAQLEEARERI 202 Query: 218 EKYKDNYRAPEYK------------------RISYILFDVHEKEKKIEISND-------- 251 E+ ++ A E + + L I Sbjct: 203 EQLREQIIAGETDFEGAATAFSDAASAMEGGDLGWRLHSQLPSLFAEAIDEGLQAGEVSG 262 Query: 252 --------ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------LKKG 293 L ++ + ++ + + ++ G Sbjct: 263 VLQNSSGFHLVKLMDQRTQGGERVTETRARHILIRTDGDVITDEDARLRLRSLLERIEAG 322 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LAE + G + LG + ++ +L ++G + FG+ Sbjct: 323 ESFAELAEAYSEDPGSAARGGDLGWTQPGQLV-PEFQGAMDAL-EEGQISAPFASPFGWH 380 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V++ + S + ++ +A Q+ K E ++ +RL + Sbjct: 381 IVQVTDRRERDV-SRERLRDQLAQQIHQRKVEEAFEQWIRRLRDEAY 426 >gi|332531190|ref|ZP_08407103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] gi|332039297|gb|EGI75710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] Length = 447 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 59/468 (12%), Positives = 135/468 (28%), Gaps = 95/468 (20%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + + L ++ + L +++LD L++ Q Sbjct: 42 VAVVNSEPITNAQVNAEVARALRQLAAQRRPA-----PEGQALRRQVLDQLINERAQLQL 96 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSR 161 ++GL+ D V + N+ + ++ ++ G+ + + L Sbjct: 97 AREMGLKIDEPSVDQAEQNV----ARQNQLTVTQLREQVQQQDGMTTQALRARLKEQLLL 152 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 T + R VD A S+A + Q+ + + Sbjct: 153 TRLRE-----------------------REVD----------ARVKVSDADVEQYLSEQQ 179 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 P + I V E + R EQ+ Sbjct: 180 QRNSNPASQLIHIAHILVAVP---------------EDASATFQLESQRKAEQI------ 218 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFT 339 A ++ +KG F LA E + + G +++ +LA G+ + Sbjct: 219 ----ARRAREKGADFAALARELSDAADRANGGQLGLRAGDRYPALFTNAVRTLA-VGEIS 273 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-------NQMRITKASEKVKEDYKRLE 392 + G+ + + + + Q+ +A +K+ + +R++ Sbjct: 274 EPVRSGAGFHVLKLIERRQPAPAPQTVTQSRARHILLIPSAQLSEAQARDKLNDFRRRIQ 333 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 ++ + ++ + G +P E ++ ++ P Sbjct: 334 SGDTDFATLARQNSQDGSAA-------QGGDLGWASPGMFVPEFENVMNQL----APGQI 382 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEE 498 + S V + + + R L E V+ + K AE Sbjct: 383 SEPLI----SRFGVHLIQLLERRQATLNEREQRELVRNMLRERKMAEA 426 >gi|307636864|gb|ADN79314.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908] gi|325995453|gb|ADZ50858.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018] gi|325997051|gb|ADZ49259.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2017] Length = 299 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N + + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|332878100|ref|ZP_08445830.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684062|gb|EGJ56929.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 479 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 31/199 (15%) Query: 210 NAVLTQWFE---KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 A L ++ +K +R Y + + EL+ Y+ K Sbjct: 76 EAALDARYDTLSSFKKEFRT-------YRDQQIRPYFVSVSAEEKELKRYYDGMKASIGP 128 Query: 267 PEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAE----EQGKSLSDI 310 + ++ ++A D + +L++G F LA+ ++G + Sbjct: 129 DGLIHPAHIMILVAQKATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGG 188 Query: 311 SL-GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 L G F+K D FSL KG+ + GY I + + K S++E+K Sbjct: 189 DLGGWFAKGQTMK-EFEDVAFSL-NKGEMSKPFQSPMGYHIVLMKDRK--QLESYEELKP 244 Query: 370 DIANQMRITKASEKVKEDY 388 + + E+V Sbjct: 245 QLQRFLESRGLKERVASMA 263 >gi|237809111|ref|YP_002893551.1| SurA domain-containing protein [Tolumonas auensis DSM 9187] gi|237501372|gb|ACQ93965.1| SurA domain protein [Tolumonas auensis DSM 9187] Length = 436 Score = 90.8 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 61/390 (15%), Positives = 125/390 (32%), Gaps = 80/390 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + V + V S + +++ + + L K+ILD L+ + + Sbjct: 31 DNVIAIVNKDVVVQSELDRLMHKVQADAAEQRQTLPPYHQ-----LHKQILDRLIEDSLI 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E GL ++ +A + + S ++ REG+ E+ + K + Sbjct: 86 LQLAERQGLRIGDSQLDQALASIAA----EKRLSVADMQAKAEREGLTPAEFRETVRKEM 141 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++ + +R R + ++ + Q ++ Sbjct: 142 ------------------MISEMRRNQLRQR---------------INITDQEVKQLAKQ 168 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + I +IL + + + R E Sbjct: 169 ISEQGNKGQRFHIEHILLSLSSDADR--------------------GEQQRVAE------ 202 Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +A + Q LKKG F Q+A K+L G + E +P SL S A K Sbjct: 203 --KARQLLQQLKKGADFHQMAVAESADSKALDGGDWGWMTIEEMP--SLMAEAISGAHKD 258 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASEKVKEDYKRL 391 F + G I HV +++ + QEV + + KA + +K + + Sbjct: 259 QFIGPLRSGAGLHIIHVKDMQGQQAIEMQEVNARHILLKTSVILSDEKAEQMLKGYLRDI 318 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFA 421 + A + E + ++ + +A Sbjct: 319 QSGKASFAKLAEKYSDDTGSALKGGELGWA 348 >gi|299140828|ref|ZP_07033966.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris C735] gi|298577794|gb|EFI49662.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris C735] Length = 713 Score = 90.4 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 90/725 (12%), Positives = 197/725 (27%), Gaps = 133/725 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR S+ + + F+ +A S + V V +K+ + F Sbjct: 4 LGKIR--SKGAFLMGIIGLGLFAFI---AEEAFRSCESTRNNARQQVGEVLGEKINVNEF 58 Query: 57 INSWKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + +I Q+ +N E+ + + + V ++ + +GL + Sbjct: 59 QKLVDEYTEVIKMQQGAEALNDEQLNQ--VKDMVWNTFVQTKIVEHEAKQLGLRVTDAEL 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYI-------- 152 + ++P + + +F + LA ++Y Sbjct: 117 QNVLKAGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDTQRSANPQMAQQYETIYKYWTF 176 Query: 153 --DHYTKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRFYFENRSVDYIVLN 198 + L + + + + Q F + + D + + Sbjct: 177 IEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFKEENNESNIQLAAFPYSSIQDDKVQIT 236 Query: 199 NRHVPAI-----------------------ADPSNAV---LTQWFEKYKDNYRAPE---- 228 + A PS A L + F Y + + E Sbjct: 237 ESDLKAKYDELKPRFQQYVESRDIKYVDFQVTPSAADKNALQKEFAGYAKDLASAEDPSA 296 Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNK----------------------EKYFS 266 R S L + ++ A+ + K Sbjct: 297 VVRKSSSLVNYLGIPVGKTAFPSDIAAKLDSMAVGHTSGIIENTMDNTLNVIRLIAKQQL 356 Query: 267 PEIRTVEQLVFP------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 P+ Q+ K AD + +LK G F +A++ G++ + + Sbjct: 357 PDSIEYRQIQVGGASADVAHKSADSIYAALKAGADFEAVAKKYGQT---GQKAWMTTQQY 413 Query: 321 PDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + D + ++ + ++ G +I V + K V I Sbjct: 414 QNAPSMDNDTKNYITSLNMMAVNETKNIVL-PQGNIIVQVLSRKAMTDKYIAAV---IKK 469 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + ++E + Y + F++ + D+I + + + +A I Sbjct: 470 NIVF--SNETYSKAYNKFSSFVSANQTGDDIIKNAAKSGYRVQEANDI--TTAQHYLANI 525 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWK 491 L +F + + + + P R L+ +V VK + Sbjct: 526 HGTRDALKWLFEAKQGAVSQMYTCGDNDHLLVAVLTKIHPVGYRSLDDSQVKEMVKAEVM 585 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 K AE + SK N V + + + + Sbjct: 586 KDKKAEMLMSKLNG-VSTLAAAKAKGAKVADVNQVTFAAPVFVTLTGASEPALS----GA 640 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 V++ ++ +F+VTN + P + DK + + + + L Sbjct: 641 VYATAKGKFSTKAVKGNAGVYMFQVTNKTMRPGKFDDKTMEQKLRQKTMQYAGNFMNELY 700 Query: 612 SQYSV 616 V Sbjct: 701 INAKV 705 >gi|218777908|ref|YP_002429226.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759292|gb|ACL01758.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01] Length = 330 Score = 90.4 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 52/357 (14%), Positives = 103/357 (28%), Gaps = 71/357 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S L I G + IL+ +VS + Sbjct: 34 DRIVAIVNTDVIMLSELNEKMAPILAKIDA-AGLPDEQREKTIYKYREDILNTMVSSLLV 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 +Q E +G++ G V + R F + + ++L +GI+ + + + Sbjct: 93 EQESEKLGVKVMEGEVDSYLER---FKQSSHLTDEAL-RAQLEADGISMDLFRNQIHDTI 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + V + ++ + ++ + Sbjct: 149 LFQKL---------------------------------KTTEVDSKIVITDKEVQDYYNE 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + D Y + + YIL Y +N + E + Sbjct: 176 HIDQYEGKKSYHLRYILLP------------------YPEN----ATEEQKAA------V 207 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336 +K E K G+ F L E S LG F + + K G Sbjct: 208 EKTMGEIIAMFKAGESFPALIENVSNEKIGGSGGDLGFFKAGDLTKDLSEKV--KIMKPG 265 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 D T + G I + + S ++V+++I + + + K ++ LE+ Sbjct: 266 DITEPMTVDLGLQIFWLEETEMGEGASLEDVRQEIQDLLYNEEVKHKYEKWVSELED 322 >gi|108562596|ref|YP_626912.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1] gi|107836369|gb|ABF84238.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1] Length = 299 Score = 90.4 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|226309756|ref|YP_002769650.1| hypothetical protein BBR47_01690 [Brevibacillus brevis NBRC 100599] gi|226092704|dbj|BAH41146.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 300 Score = 90.4 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 27/268 (10%) Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV--GMFVGGMRPSNLLL 179 P D S+D +V+ L + ++ + +VV G+ L Sbjct: 33 QPAAIVGDKTISNDEYVTALKQ------KFGKQVLNDMINREVVFQEAKRSGITVDPKQL 86 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 +Q ++ + A + L Q ISY + Sbjct: 87 EQELSQIRDSYGSRTDSEFEAALIKQAGTTVEALKQ---------------EISYQILLQ 131 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K + I ++EL Y ++Y P + Q+V +QKEA++ LK G F + Sbjct: 132 TLATKDMTIKDEELINVYNSRSDRYTRPMQVRLGQIVVASQKEAEQVLADLKNGADFQTI 191 Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ + +G S + A I +K ++ I YVI + Sbjct: 192 AKARSIDADTAVNGGDVGWVSIKDNRLPDEAKPIVEKLEKDKYSEAIKIQDQYVIYQLRE 251 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383 + + +F+EVK ++ +M + Sbjct: 252 RREASQRTFEEVKDELRREMAFAQVESL 279 >gi|317012021|gb|ADU82629.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Lithuania75] Length = 299 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|116750899|ref|YP_847586.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] gi|116699963|gb|ABK19151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter fumaroxidans MPOB] Length = 326 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 57/381 (14%), Positives = 120/381 (31%), Gaps = 78/381 (20%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 VL V F + S + S V V + + +S ++ L ++ + + ++ Sbjct: 7 VLLVLFCVIAASGRCAADSLDRIVAVVNGEIILYSEL----QERLQLVQKSLPETRTNDP 62 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 AR +++++L + +Q + + + V I F D+ S + Sbjct: 63 ARKAAIERELLQQMTREKLTEQEAKRLKITVTKKDVDEAI----AFVMADHNVSQAQMEA 118 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 RL G + +E+ TK L R ++ + + + +D L+ Sbjct: 119 RLKESGQSMEEFRKVLTKDLERDRLLERVLKS------------KILISEKQID-AFLSQ 165 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 +P R E R+ I + + + Sbjct: 166 SPPEVRVEP----------------RGKEEYRLGIIFLPASDGAEGKQ------------ 197 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFS 316 +K A E + LK G+ F +A + K + +G S Sbjct: 198 -------------------AEKRAREIREKLKAGEDFAAMARQYSKGPAAQDGGDVGFVS 238 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-----KPSFTVSFQEVKKDI 371 + + K + V+ G GY I V+++ + + +++ Sbjct: 239 LDEL--APFIAKNVKDLKINQPSDVVKGGDGYYIFLVTDVRRAEMQAAQNSPATNMRERA 296 Query: 372 ANQMRITKASEKVKEDYKRLE 392 Q+ + + + E K LE Sbjct: 297 RRQLYQQEMARRFDEWIKDLE 317 >gi|317013595|gb|ADU81031.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori Gambia94/24] Length = 299 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N + + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|237751766|ref|ZP_04582246.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879] gi|229373132|gb|EEO23523.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879] Length = 280 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 68/186 (36%), Gaps = 18/186 (9%) Query: 225 RAPEYKRISYILFD-------VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 ++ EY+ + + V K I +S + + Y+ N + + + + V ++ Sbjct: 88 KSEEYRMANLQMLSGLWLKKQVDSLSKTINVSVADAKKFYDANPKAFVT-QNAEVRHILV 146 Query: 278 PNQKEADEAFQSLKK------GKKFIQLAEEQGKSLSDISLGSFSK----EYIPDVSLAD 327 +++A + K KF +LA++ G K A Sbjct: 147 QKEQDAKNIIAEINKVPKAKTESKFEELAKKLSIDPGSKDNGGLMKLPINSPAIAPEFAQ 206 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + ++ + +GY I ++ + T +F VK + ++ K E +KE Sbjct: 207 EVLKMSAGTYTKNPVKTRYGYHIIYLKKLDKPATQTFDSVKGQLVELLKQQKMEEVLKEK 266 Query: 388 YKRLEE 393 K++ + Sbjct: 267 VKKMRD 272 >gi|322379060|ref|ZP_08053463.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS1] gi|321148552|gb|EFX43049.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS1] Length = 267 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 14/159 (8%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------GKKFIQ 298 K +I D+L+ Y+ NK ++ E + ++ + +A L K K+FI Sbjct: 100 KEDIPEDQLRKYYQDNKTQFVQQEAK-ARHILVKTEADAKRVISELNKTPKTRIEKEFID 158 Query: 299 LAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A + + LG F K + ++++F+L + FGY + + Sbjct: 159 IANRESIDPNTKNSKNGGDLGKFQKNQMA-PEFSNAVFALKPGSYTKTPVKTEFGYHVIY 217 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + T +F++ ++ I ++ + E VK + ++L Sbjct: 218 LMSKNEPKTPTFEQARQTIIGILKEHQFQEYVKGELEKL 256 >gi|134296902|ref|YP_001120637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] gi|134140059|gb|ABO55802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] Length = 452 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 53/425 (12%), Positives = 127/425 (29%), Gaps = 68/425 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +E+ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPAEQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + +RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLDQYRARLEAQGVPWSVFTSDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205 + + V G + S+ + + + + + + + A Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 210 Query: 206 ADPSNAVLTQWF-------------EKYKDN------YRAPEY-----KRISYILFDVHE 241 + A+L Q E ++AP + L Sbjct: 211 QKKAEALLQQATSGADFEKLARNNSEANDAKKGGDLGFKAPSTLPPDVVAAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + S V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIIRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSENQARQQLLDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RKQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +GY + V + + + S Q+ + KA + + + L + + +D Sbjct: 389 TEYGYHLIQVIDRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQYKIDG 447 Query: 404 ISRRE 408 + Sbjct: 448 VGPAN 452 >gi|134295947|ref|YP_001119682.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] gi|134139104|gb|ABO54847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] Length = 260 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y+ + + ++ N+++A + +K G KF L Sbjct: 103 ENFLKKNQPTDAEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFEDL 162 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V ++ Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVDDV 222 Query: 357 KPSFTVSFQEVK 368 + F +VK Sbjct: 223 RDVAPPPFDQVK 234 >gi|302872296|ref|YP_003840932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor obsidiansis OB47] gi|302575155|gb|ADL42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor obsidiansis OB47] Length = 331 Score = 90.4 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 48/364 (13%), Positives = 110/364 (30%), Gaps = 88/364 (24%) Query: 42 TVVSVGRQKVPFSSFINSWKQ------ELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 V+ V ++V + + + + + V N + R + L ++ L Sbjct: 28 VVLEVNGEQVTKREYKIRFNTLKENAIQFSSRADILDQVFNGKTYREL-LKDELFTILTE 86 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 Q + N+ F L + G +E + Sbjct: 87 ELLCLQDARRRNIYLTKQEEEEIKKYIEELKA--NEEMRSYFNQYLRKIGSDENHFY--- 141 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + L +T ++ + + S++ + Sbjct: 142 -RDLHKTRIINKLYSSIT------------------------------SKTTVSDSEIVN 170 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++ K+ ++ +I + + + ++ ++ E+ Sbjct: 171 YYNTNKNQFK-----KIKIMDIFLKVENEEEDVQKREI---------------------- 203 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-DISLGSF------SKEYIPDVSLADS 328 A++ LKKG+ F +L ++ + S I+ G KE + Sbjct: 204 -------ANKIVSELKKGEDFEKLVKKYTEDESVGITKGIIDYFRKGEKEAEYGSVFEEE 256 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 +F LA G + +I GY I V + K + EVK +I +++ K + + Sbjct: 257 VFKLA-VGQVSNIIKTIKGYHIVKVLDEK---YMPLDEVKGEIQSKLMKQKKDQVFRLYI 312 Query: 389 KRLE 392 + L+ Sbjct: 313 ENLK 316 >gi|323143364|ref|ZP_08078052.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066] gi|322416882|gb|EFY07528.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066] Length = 457 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 127/382 (33%), Gaps = 68/382 (17%) Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88 G++ + + +T V + S + ++E+ G V+ V K Sbjct: 27 GIAFNANAQTLDTTAAVVNNDIILTSELD-AMQKEMAANFASRGQQVSP-----VNARKA 80 Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148 L+ L++ + + Q GL + ++ + + F ++ + G++E Sbjct: 81 ALEQLITKSLILQQARTHGLNLNDMQLDQALEQ---FAARNGVSVKTLLDQM--GPGLSE 135 Query: 149 KEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLLDQAKRFYFENRSVD------YIVLNNRH 201 + + + L +V ++ S+ + + + SV+ +++ Sbjct: 136 AAQRERFREDLIIGEVRRNQVRNRIKISDSEVKLLAKNLKQLGSVEPSYHLSQLIVPLAA 195 Query: 202 VPAIADPSNA------------------VLTQWFEKYK------DNYRAPEYKRISYILF 237 A A L + + D PE + L Sbjct: 196 NATSAQVQRAVNTVDKIKADLRKGADFNDLAALYTQGSLAAQGGDLGYIPESRVPVPFLP 255 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKY--------FSPEIRTVEQLVF------PNQKEA 283 + + + I +++ Y + KY + + ++ P++ Sbjct: 256 SLLKSKPGAVIGP--IRSPYGLHLIKYVGVTDGAVKTITMYDASHILLTTSIVYPDETAV 313 Query: 284 DEA----FQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 E + LK F A+ + G +++ LG + + D + A ++ L K Sbjct: 314 KELNLLRDEILKGAISFSDAAKNFSEDPGSAINGGDLGYATPDR-YDPAFAAAMVRL-KP 371 Query: 336 GDFTPVIHGSFGYVIAHVSNIK 357 G+ + + SFGY + +++IK Sbjct: 372 GEISEPVRSSFGYHLIKLNDIK 393 >gi|229918171|ref|YP_002886817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp. AT1b] gi|229469600|gb|ACQ71372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp. AT1b] Length = 333 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 13/198 (6%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 + K K ++++++E++A++ K ++ ++EA + + L G Sbjct: 140 MLVDAAKSKLVDVTDEEIEAQFAKENV------EVEASHILVETEEEAQDIIKELNDGAD 193 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA+E+ LG FS + + F G + + FG+ + Sbjct: 194 FAELAKEKSTDTGSGEKGGELGFFSAGAMV-PEFEEYAFKEDVVGKISEPVQSQFGFHVI 252 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V++ K ++ K I ++ K AS + Y L E + + ++ Sbjct: 253 KVTDRKEKDLK-LEDEKDRIREELAAEKSASVDANKIYAELIEKYNVDVKDAKAEQQFDA 311 Query: 411 VSIDLPLVDFAGKDVKGK 428 V + D + ++ + Sbjct: 312 VKEAIKNADESSEEPAAE 329 >gi|160898739|ref|YP_001564321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] gi|160364323|gb|ABX35936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans SPH-1] Length = 261 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 6/156 (3%) Query: 219 KYKDNYRAPEYKRISYILFDV--HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + Y+ IL + +KK +++ E +AEY+K E + ++ Sbjct: 82 ANSEAYKQQMELARQTILIRALFEDFQKKNPVTDAEAKAEYDKAVAANSGKEYK-ASHIL 140 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLA 333 ++ A +K GKKF +A+++ K + G P ++++ L Sbjct: 141 VESEDRAKAIIAEIKAGKKFEDIAKKESKDPGSGARGGDLDWANPGNYVPEFSEALIKLE 200 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 K G + FGY I + + + + F+EVK Sbjct: 201 KGGMTQEPVKTQFGYHIIRLDDARQAELPKFEEVKP 236 >gi|315586175|gb|ADU40556.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A] Length = 299 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289 >gi|308183972|ref|YP_003928105.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori SJM180] gi|308059892|gb|ADO01788.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori SJM180] Length = 299 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N + + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|261839036|gb|ACX98801.1| Protein maturation protease (Peptidylprolyl isomerase) [Helicobacter pylori 52] gi|317181484|dbj|BAJ59268.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori F57] Length = 299 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 20/212 (9%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + ++ N D + E K + + E+ KKI+I Sbjct: 86 IRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QALVEFWAKKQAEEVKKIQIPEK 138 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGK 305 E+Q Y NK++ F + ++ + EA + KK KFI+LA Sbjct: 139 EMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDTI 198 Query: 306 SLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG F K + + + F+L + FGY I ++ + Sbjct: 199 DPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 T ++ + K I ++ E++ + + L Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289 >gi|299536706|ref|ZP_07050016.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1] gi|298727820|gb|EFI68385.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1] Length = 323 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 49/382 (12%), Positives = 115/382 (30%), Gaps = 117/382 (30%) Query: 6 RKASRTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 R ++ +A I +++L + F+ W + + + V ++ + ++ + ++ Sbjct: 24 RLKTKPALAVIAVLLLGNVLWFISWLIPNKGQEIGSDEQVAAIDGDVITRQEWMIAMEER 83 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 G K+ L NLV+ +++ + ++ + E+A Sbjct: 84 YG---------------------KETLQNLVNETVMEKAAKTYKIKVTDKEIDLELALM- 121 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 +KF A + ++ ++ L V+ Sbjct: 122 --RSAQDKFDT-------AMQNLSAEQLRQKIRSQLILDKVL------------------ 154 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + +++E+ + Y R ++ Sbjct: 155 -------------------TKDVVIEEENVEKYYEENQGLYNTKTSYRTNF--------- 186 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + ++K ADEA LK G F LA E Sbjct: 187 -------------------------------IEVDSKKAADEALGELKNGSDFTVLAREI 215 Query: 304 GKSLSDISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIK 357 + SLG + D ++ +++ SL K + + G Y I V + Sbjct: 216 SVDSASASLGGDIGFLTENQENVDPAIINTVKSL-KANEVSKAFKLDNGHYGIVQVQEVL 274 Query: 358 PSFTVSFQEVKKDIANQMRITK 379 + ++ +VK+ I ++ + + Sbjct: 275 EGQSFTYDDVKEHIERELALEQ 296 >gi|238752276|ref|ZP_04613756.1| Chaperone surA [Yersinia rohdei ATCC 43380] gi|238709544|gb|EEQ01782.1| Chaperone surA [Yersinia rohdei ATCC 43380] Length = 434 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 128/404 (31%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L ++L+ L+ L Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDGTLRHQVLERLIMDNIL 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITVSDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEI 269 E+ + + + + EL + + + + +I Sbjct: 196 EELAKKLASDIKAGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSAKKGDI 255 Query: 270 R-----------------------------TVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTELHARHILLKPSPVMTDDQARAKLSAAAADIK 315 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKASFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDAVMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + + + + + K + K +E+ + + Sbjct: 374 GWHLIQLVDSR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 >gi|221633228|ref|YP_002522453.1| putative post-translocation molecular chaperone [Thermomicrobium roseum DSM 5159] gi|221156643|gb|ACM05770.1| putative post-translocation molecular chaperone [Thermomicrobium roseum DSM 5159] Length = 464 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 11/125 (8%) Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG----KSLSDISLGSFSKEYIPD 322 E ++ ++ A++A ++ G F +A E+ + + LG + Y+P Sbjct: 289 AEQIHAAHILLATREAAEQALADIQGGADFATIARERSIDSDTAPNGGDLGWLPRGYMP- 347 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + F+LA G+ + +G+ I V P +S + + +R S Sbjct: 348 SAFDEVAFALA-PGEVGGPVQTQYGWHIVKVLERDPDRPLS-----ERMLQALRGQALSR 401 Query: 383 KVKED 387 + E Sbjct: 402 WLDEQ 406 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 20/101 (19%) Query: 41 STVVSVGRQKVPFSSF----INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL--- 93 VV V + + + + ++ Q + + + L + L Sbjct: 66 QVVVEVNGEPITRADYWKMRRLELLNQISQYQQLANLMSGQQSVQYQQLADQARQQLTTV 125 Query: 94 -------------VSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + Q + +G+ D V Sbjct: 126 ERDPINQATVGQMIDDRLVLQRMGQLGVALDEREVEDYTVS 166 >gi|15611231|ref|NP_222882.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori J99] gi|10720360|sp|Q9ZMQ7|Y175_HELPJ RecName: Full=Uncharacterized protein jhp_0161; Flags: Precursor gi|4154677|gb|AAD05744.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori J99] Length = 299 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N + + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|208434128|ref|YP_002265794.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27] gi|208432057|gb|ACI26928.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27] Length = 299 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|322381169|ref|ZP_08055172.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154745|gb|EFX47016.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 303 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 50/382 (13%), Positives = 116/382 (30%), Gaps = 110/382 (28%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 VV+ V F+I+G + A + + V +G+ K+ + G Sbjct: 16 LAVVVLVCFVIFGFTGA--ASGNGTVVAEIGKTKIRKGDLEQNLITHYGS---------- 63 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 +L+ ++ + + GL+ + E+ + + F Sbjct: 64 -----------SVLNQMLDREAIKMEAQSAGLQISDADIDKELKVMMQAYESEEVF---- 108 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + S + G++ +E D V Y + Sbjct: 109 YQSMKEQLGMSRQEVKD-------------------------------------DVYYKL 131 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 L + S++ + + + + + Y Sbjct: 132 LLEKVATKDIQVSDSEIQDYIQAHPEEY-------------------------------- 159 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLG 313 + ++ +++A++ + KG F +LA ++ + LG Sbjct: 160 --------AKKREMHLRRVTTKTREQANKVVAAFSKGDDFAKLARDRSIDDYANNGGDLG 211 Query: 314 SFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 ++ + D + L K G + + + GY+I + K + Q +K+ + Sbjct: 212 WVKEDDPLTDKQVMKQAKDL-KVGQISKPVQTNEGYLIVFLQESKDKGGLDEQTIKETVR 270 Query: 373 NQMRITKASEKVKEDYKRLEEF 394 Q+ + KA +K+ K+L E Sbjct: 271 KQLALQKAPS-IKDLSKKLREK 291 >gi|285019522|ref|YP_003377233.1| ppic-type peptidyl-prolyl cis-trans isomerase [Xanthomonas albilineans GPE PC73] gi|283474740|emb|CBA17239.1| probable ppic-type peptidyl-prolyl cis-trans isomerase protein [Xanthomonas albilineans] Length = 455 Score = 90.4 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 55/445 (12%), Positives = 121/445 (27%), Gaps = 71/445 (15%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + K L I G+S V V S + + + Sbjct: 1 MTKTLSAFLLAVLAIAGVSAQAAVQQTQPLDRIAAVVDEDVVLQSELDRAVRNVKAQYAG 60 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + +++ L +++L+ LV G+ + IA + Sbjct: 61 R-----DTQLPPDNVLRRQVLERLVLVKLQVARANSTGIHVSDDELNRAIASI----AQQ 111 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFE 188 N D ++A +G++ ++ + ++ + F + S +D A Sbjct: 112 NNTDVDGLRKKIAADGMSYDDFRNSVRDEITVQRLRQSFAQSRINVSESEVDAALTQQAT 171 Query: 189 NRS---------------------------------VDYIVLNNRHVPAIADPSNAVLT- 214 + +D ++ S L Sbjct: 172 TGTQYHLAHILVGLPEGATAEQIKTAQGKIDGVKSLIDKGEIDFNAAAVRYSDSPNALEG 231 Query: 215 -----QWFEKYKDNY------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 + ++ + + P + K +E+ + E + E Sbjct: 232 GDLGWRSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEVRDAAANPEKKTVTEY 291 Query: 264 YFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSK 317 + + V +A + + G F ++A+E + LG F Sbjct: 292 HARHILARVSDAQPDAAAKAKIETLRARIAGGADFQKVAKEASDDTNSRNQGGDLGWFPI 351 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + + SL + G +P G+ I + + S Q+R Sbjct: 352 DAF-GADFGHQVESL-QDGQISPPFRTEAGWHILQRVGERQTDVTS-----DTQRAQVRE 404 Query: 378 TKASEKVKEDYKRLEEFLALGTSMD 402 T K++E+Y R + + +D Sbjct: 405 TIGRRKLEEEYNRFLQEMRGEAYVD 429 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 39/274 (14%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L + V G+ S+ L++A + NN V + A Sbjct: 78 RLVLVKLQVARANSTGIHVSDDELNRAIASIAQQ--------NNTDVDGLRKKIAADGMS 129 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + D++R I+ + +I +S E+ A + + + + Sbjct: 130 Y-----DDFRNSVRDEITVQRLRQSFAQSRINVSESEVDAALTQQA---TTGTQYHLAHI 181 Query: 276 VFPNQKEADEAFQSLKKGK-------------KFIQLA---EEQGKSLSDISLGSFSKEY 319 + + A +GK F A + +L LG S + Sbjct: 182 LVGLPEGATAEQIKTAQGKIDGVKSLIDKGEIDFNAAAVRYSDSPNALEGGDLGWRSLDE 241 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-----IANQ 374 IP+ + A I + K G + G G+ + + ++ + ++ + I + Sbjct: 242 IPN-AFAQLIRDM-KPGQVAGPLRGPSGFQLLKLVEVRDAAANPEKKTVTEYHARHILAR 299 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + + K + L +A G ++++ Sbjct: 300 VSDAQPDAAAKAKIETLRARIAGGADFQKVAKEA 333 >gi|329903502|ref|ZP_08273518.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Oxalobacteraceae bacterium IMCC9480] gi|327548325|gb|EGF33013.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Oxalobacteraceae bacterium IMCC9480] Length = 475 Score = 90.1 bits (222), Expect = 9e-16, Method: Composition-based stats. Identities = 76/481 (15%), Positives = 150/481 (31%), Gaps = 96/481 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + + + Q+ S+ + L+K+IL+ ++ Sbjct: 64 DSIVAVVNSDVITRLDLNSRVALVETRMKQQ-----GSQLPQRALLEKQILERMIVDRAQ 118 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q D G++ D + +AR + NK S F ++L REG + + + + Sbjct: 119 LQLAADSGIKIDDVMLDRAMARL----AEQNKLSMQDFRNQLEREGTPFSRFREEIREEI 174 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + R VD + + + + + Sbjct: 175 AMQRIRE-----------------------REVD----------NKLQITESEVDNYLDA 201 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K+ ++Q EY + PE T EQ+ Sbjct: 202 EKNA---------------------------PQIQPEYNLAQILIRIPENATAEQI-AAR 233 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + AD+ + L+ G F +LA +L LG + + +P + D++ L +G Sbjct: 234 RARADDVARQLRSGADFAKLAASYSDSIEALKGGELGWRTADRLPQL-FVDAVARL-NEG 291 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK-----------ASEKVK 385 + + VI + G+ I V+ + S A Q + A+E ++ Sbjct: 292 ELSAVIKSASGFHILKVAGKRTRSADSSTASAAAPAVQQTRARHILIKVNTIVTAAEALR 351 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 + + + +E+++ + G G V LL Sbjct: 352 KLTDLKQRLDNKAATFEELAKLYS-NDLSASKGGDLGWIYPGDTVPEFERAMNLLK---- 406 Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 P + P G Y +++ E ++D E ++ + K E Q Sbjct: 407 ---PGEVSAPIETPFG-YHLIEVIERK-SQDVSQERKRLSARQALRERKLEEATQDWIRQ 461 Query: 506 L 506 L Sbjct: 462 L 462 >gi|88707182|ref|ZP_01104874.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain protein [Congregibacter litoralis KT71] gi|88698587|gb|EAQ95714.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain protein [Congregibacter litoralis KT71] Length = 295 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 29/227 (12%) Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-NDELQAE 256 PS+ ++ + Y + E + Sbjct: 73 KLAAEADKITPSDDD---YWTLHAAL------VGAKYEYMFKRLVSEVSEPDFEPLARER 123 Query: 257 YEKNKEKY-FSPEIRTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 Y K+KY F PE+R ++ + +A L+ G F + E Sbjct: 124 YVTQKDKYAFVPEVRASSHILLISPPGIDRTEVRAKAQGLLDQLRAGADFEAMVAEYSDD 183 Query: 307 LSD----ISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 SLG + + P ++++F + G+++ V FG I + ++ S Sbjct: 184 AGTRARKGSLGKYIRFGDPGITPPYSEALFEIENVGEYSEVTDSQFGVHIIRLDAVQESA 243 Query: 361 TVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLALGTSMDEI 404 F +V+ I +++ A ++V+ + ++ G M+E+ Sbjct: 244 YAEFDKVRDVIITEIKREFAGLARDEVRGRFSITDDLYINGELMEEL 290 >gi|237749474|ref|ZP_04579954.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13] gi|229380836|gb|EEO30927.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13] Length = 256 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQ 298 + K +S++E++AEY++ + V+ ++ ++ AD + + K F + Sbjct: 98 NNYVTKNPVSDNEVKAEYDRLVKMQKGQTEYHVKHILVKDKATADSIIKQVSKNPASFEK 157 Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353 LA+E+ + +G + + +D++ SL KKG + + FGY I V Sbjct: 158 LAQEKSLDKASAARGGDMGWATAGDLVKP-FSDAMVSL-KKGQVSKTPVQTEFGYHIIKV 215 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + +++++K + M+ K E Sbjct: 216 VDSQKVKIPTYEQIKPKLKASMQYRKWQE 244 >gi|254778889|ref|YP_003056994.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative signal peptide [Helicobacter pylori B38] gi|254000800|emb|CAX28724.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative signal peptide [Helicobacter pylori B38] Length = 299 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLDQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|293392898|ref|ZP_06637215.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM 4582] gi|291424432|gb|EFE97644.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM 4582] Length = 433 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 64/436 (14%), Positives = 136/436 (31%), Gaps = 72/436 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L ++ + A + V +V V S +N Q + + +Q+ G Sbjct: 6 TLILGLVVCA------NAAFAAPQEVDKVAAVVDNGVVLESDVNGLLQSVKLNAQQAGQQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + ++ L +IL+ L+ Q + +G+ + I N+ S Sbjct: 60 LPDDK----TLRHQILERLIMDNIQLQMAKKMGINVTDADLDKAIGNIAA----QNRMSI 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR--- 190 D SRLA EG+N Y K + T+V + +D + Sbjct: 112 DQLRSRLAYEGLNYNTYRSQIRKEMLITEVRNNEVRRRVTILPQEVDALAKQVGAQNGSD 171 Query: 191 ---SVDYIVLNNRHVPAIADPSNAVL--------------------------TQWFEKYK 221 ++ +I++ P+ A Sbjct: 172 TEMNISHILIPLPENPSQQQVDEAETLAKRLIGEINSGADFGKLAITYSADSQALKGGNM 231 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLV 276 + E + +K + + K + + + ++ Sbjct: 232 GWGKLQEIPTLFAERLVSAKKGDVVGPIRSGVGFHILKVNDLRGASQSISVTEVHARHIL 291 Query: 277 FP---------NQKEADEAFQSLKKGK-KFI----QLAEEQGKSLSDISLGSFSKEYIPD 322 + + +E ++K GK KF QL+++ G +L LG S + I D Sbjct: 292 LKPSVVMTDDQARAKLEEVAAAVKSGKAKFADEAKQLSQDPGSALQGGDLGWASPD-IYD 350 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + D++ L +KG+ + +H +FG+ + + + + R+ + Sbjct: 351 PAFRDALLKL-QKGEVSQPVHSAFGWHLIQLLDTRQVDKTD----AAQKERAYRMLFNRK 405 Query: 383 KVKEDYKRLEEFLALG 398 +E ++E A Sbjct: 406 FAEEAQTWMQEQRAAA 421 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 82/240 (34%), Gaps = 19/240 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR+ K + +E +++ I E+ A ++ + S + ++ P Sbjct: 124 NYNTYRSQIRKEMLITEVRNNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNISHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325 + A + G F +LA + G+ + ++ Sbjct: 184 PENPSQQQVDEAETLAKRLIGEINSGADFGKLAITYSADSQALKGGNMGWGKLQEIPTLF 243 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEK 383 A+ + S AKKGD I G+ I V++++ S ++S EV I + + ++ Sbjct: 244 AERLVS-AKKGDVVGPIRSGVGFHILKVNDLRGASQSISVTEVHARHILLKPSVVMTDDQ 302 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K +S D G P L ++ Sbjct: 303 ARAKLEEVAAAVKSGK--AKFADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALLKL 360 >gi|219685287|ref|ZP_03540106.1| basic membrane protein [Borrelia garinii Far04] gi|219673060|gb|EED30080.1| basic membrane protein [Borrelia garinii Far04] Length = 336 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 55/374 (14%), Positives = 122/374 (32%), Gaps = 84/374 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K FL ++ + I G++ S + ++ V + + + + F + + + + Sbjct: 1 MKSFLFLVILG--IMGIN----SFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + + K++L L++ Q G++ V I F + Sbjct: 51 QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + + + ++G N E + + LS +V + R Sbjct: 102 -LTDEQIKQMIEKQGTNWSELLASMKRSLSSQKLVLK------------------QAQPR 142 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + PS + +++E K + P+ R+S+I F +K++ + Sbjct: 143 -----------FSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHIFFSTKDKKRSDVLDQ 191 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 KN +++ F +EA + + ++ + L + Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 S G + + + +F+ KGD + I G+ I V+ + + Sbjct: 230 SRGDQNAQNLLGADFIKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288 Query: 367 -----VKKDIANQM 375 VK I N M Sbjct: 289 TTDLIVKDAIRNNM 302 >gi|238026987|ref|YP_002911218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae BGR1] gi|237876181|gb|ACR28514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae BGR1] Length = 259 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ +++A Y++ + E + ++ N++ A E +K G KF L Sbjct: 103 EDFVKKNQPSDADIKARYDELTKSVSGNEY-HLHHILVDNEQLAKELIAKIKAGAKFEDL 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G P A++ L K + FG+ I V ++ Sbjct: 162 AKQYSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDTPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVK 368 +P +VK Sbjct: 222 RPVAPPPLDQVK 233 >gi|210134373|ref|YP_002300812.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12] gi|210132341|gb|ACJ07332.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12] Length = 299 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KK++I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|217970665|ref|YP_002355899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T] gi|217507992|gb|ACK55003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T] Length = 260 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 68/166 (40%), Gaps = 5/166 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ I + + + + + EL+ EYE K + E + ++ + +A Sbjct: 95 RQAILIRAYLQDYVRTNPVDDAELKKEYEAIKGRMGDKEYKP-RHVLVETEDQAKAIIAR 153 Query: 290 LKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L+ G F ++A+E G LG S + +D++ L K T + F Sbjct: 154 LQGGTAFEEVAKESRDPGSKERGGELGW-SNPAMYVKPFSDAMVQLQKGKYTTTPVKSDF 212 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 GY + + +++ F+EVK + +++ K V + ++ + Sbjct: 213 GYHVIQLDDVRDVQPPPFEEVKPQLQQRLQQQKIERHVLDLREKAK 258 >gi|228924392|ref|ZP_04087629.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835272|gb|EEM80676.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 290 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 28/214 (13%) Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD--- 238 ++ E +D +++ D L + +Y + + L D Sbjct: 61 LQQVMLEKILLDKYKVSDDETKKNVD----ELKKEMGDNFKSYLTQKNVKNEDELKDKLK 116 Query: 239 ---VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 EK K I+ E++ Y+ I V ++ ++K A E + + + Sbjct: 117 TQMAFEKAIKASITEKEIKNYYK---------PILKVSHILVKDEKTAKEIKEKINNSED 167 Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F +A+E + LG + + D ++ ++L + G + I SFGY Sbjct: 168 FTTVAKEHSEDPGSKEKGGELGELNAFQMDRMDPKFKEATYNL-ETGQVSEPIKSSFGYH 226 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 I + K F + K++I+ ++ + ++ Sbjct: 227 IIKMIEKKE--LKPFNQEKENISKELEAKRLKDQ 258 >gi|261837623|gb|ACX97389.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori 51] Length = 299 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KKI+I E+Q Y NK++ F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|311280964|ref|YP_003943195.1| SurA domain-containing protein [Enterobacter cloacae SCF1] gi|308750159|gb|ADO49911.1| SurA domain protein [Enterobacter cloacae SCF1] Length = 428 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 112/369 (30%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDNTLRHQILERLIMDQIILQMGQKMGVKVSDEQLDQAIASI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA +G+N Y K + ++V + +D + Sbjct: 110 TMDQMRSRLANDGLNYNTYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGNQND 169 Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224 I++ P S A + + Sbjct: 170 ASTELNLSHILIPLPENPTSDQVSEAEAQARSVVEQARGGADFGKLAITYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVEQ 274 R E I +K I + ++ + + + S Sbjct: 230 QMGWGRIQELPSIFAQALSTAKKGDIIGPIRSGVGFHVIKVNDLRGQSQTISVTEVHARH 289 Query: 275 LVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ + + ++ +K GK F + A+E + + G ++ I Sbjct: 290 ILLKPSPIMSDDQARAKLEQVAADIKSGKTTFEKAAKELSQDPGSANQGGDLGWATPDIY 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D S D++ L+K G + +H SFG+ + + + + + + K + K S Sbjct: 350 DPSFRDAVMKLSK-GQVSAPVHSSFGWHLIQLLDTR-NVDRTDAAQKDKAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR+ K + +E ++I + E+ A ++ + + + ++ P Sbjct: 124 NYNTYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + + G F +LA + G I + S+ Sbjct: 184 PENPTSDQVSEAEAQARSVVEQARGGADFGKLAITYSADQQALKGGQMGWGRIQELPSIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ + V++++ S T+S EV I + + ++ Sbjct: 244 AQALSTAKKGDIIGPIRSGVGFHVIKVNDLRGQSQTISVTEVHARHILLKPSPIMSDDQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + E + K +S D + G P + ++ Sbjct: 304 RAKLEQVAADIKSGKTTFE--KAAKELSQDPGSANQGGDLGWATPDIYDPSFRDAVMKL 360 >gi|285808215|gb|ADC35749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium 293] Length = 392 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 106/357 (29%), Gaps = 84/357 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK--KILDNLVSGA 97 +VSV V S F I+ G + D +IL + Sbjct: 31 ERVIVSVNGGIVSQSEFEQ------RQIAAVQGARIGPSEVEKYLRDNNARILQEAIDDL 84 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 L Q ++G + V I +N S +L REG+ + + + Sbjct: 85 LLVQRASELGFKVPTTYVDETIEGI---KKDNNIPSDQDLQDQLRREGMTLSDLRRNIER 141 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 +SR V+ R + S+A + Sbjct: 142 QVSRRWVLQ---------------------------------RELEGKTSVSDAEARAEY 168 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +K K Y P + I+ + Sbjct: 169 QKNKAEYDKPGTVTLREIVVGGED-----------------------------------A 193 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAK 334 + A++ + + G+ F LA+ + + LG S + LA +F+L K Sbjct: 194 ATRARAEDVAKRARAGEDFAALAKSTSSAASAKNGGELGQLSHTDLA-PDLARIVFALPK 252 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G T + + G+ I V + V F++VK +I ++ KAS + + L Sbjct: 253 GG-VTDPVPVAKGFRILKVEDRSEGGLVPFEQVKAEITRKLVQEKASGEYDRYIEGL 308 >gi|295111546|emb|CBL28296.1| SurA N-terminal domain. [Synergistetes bacterium SGP1] Length = 368 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 62/454 (13%), Positives = 136/454 (29%), Gaps = 104/454 (22%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPF 53 ML+ +R + + I + L FL++ G S + V +V + + Sbjct: 1 MLKNLRTHMKWIMITIVVAFLLSTFLMYEGRSGRRGPSRSADGTMTDYEVAAVDGRPLMR 60 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 S N + L + N+ + + +LD V L+ ++ + Sbjct: 61 SELENRLRAYLEN-----SGLRNAASLDLPAVYQAVLDQYVLERQLESEVKKADIAISDA 115 Query: 114 RVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 + D+ F + + F + L R+GI+ EY + L+ ++ M VG Sbjct: 116 DAEQAMKA-----YADSAFPTREAFYAALERQGISSAEYKKSLARQLAVQQLLHMAVG-- 168 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKR 231 S ++++ KD +R P Sbjct: 169 --------------------------------DVTVSEDEAVKFYDSIKDQLFRTPAGVN 196 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + F +A+ L+ Sbjct: 197 LQVAR----------------------------------------FGASADAEALRAKLQ 216 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKE--YIPDVSLAD---SIFSLAKKGDFTPVIHGSF 346 G ++Q G +L+ + + S ++E ++P+ + + + G +PV + Sbjct: 217 AGTDWVQ--ATSGDALASMDVLSVTREPLFLPESAFESGVLAELASLDVGAVSPVFSPAS 274 Query: 347 G-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL---EEFLALGTSMD 402 G + +A + +++V D+ +R + K+ + L E + S+ Sbjct: 275 GDFSVAVKTERVSESVRPYEDVSSDVRAFLRSQEERRKLNDYEAALMAKAEVVIYDASLF 334 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 S + + A + + K Sbjct: 335 PASADTTASAEPQAVSTDASASADVEPASDDAAK 368 >gi|308182349|ref|YP_003926476.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4] gi|308064534|gb|ADO06426.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4] Length = 299 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KKI+I E+Q Y+ NK++ F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYDANKDQLFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGN 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQERLFQERMNQRIEEL 289 >gi|163856017|ref|YP_001630315.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM 12804] gi|163259745|emb|CAP42046.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii] Length = 258 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 4/157 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297 + + K +++ ++QAEY+K K++ V ++ ++K A++ +K K F Sbjct: 99 MADYLAKHPVTDQQIQAEYDKAKQQQAGQMEYKVRHILVEDEKTANDLLAQIKGNKSKFA 158 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ K + G P AD++ SL K + FG+ I V Sbjct: 159 DLAKQNSKDPGSAAKGGDLGWASPTNYVKPFADTVSSLKKGQLADKPVQTQFGWHIIEVE 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +P +V+ + +R + KE ++ Sbjct: 219 DTRPVEFPPLDQVRPQLEEMLRQQTLTAYQKELREKA 255 >gi|149926466|ref|ZP_01914727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] gi|149824829|gb|EDM84043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] Length = 260 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 5/222 (2%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V G + ++ +Q KR + + + + AV + Sbjct: 29 VNGQSIPSALVDFIMAEQEKRGQAASPEMR-ATIRQELINQEVMKQEAVKKGLGSSPEVK 87 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 Y+ + + K ++++ E++ Y + + E R ++ + EA Sbjct: 88 YQVQMMNQAILANALREDFYKNTKLTDKEVETAYAEIAKMMGGSEFR-ASHILVEQEAEA 146 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTP 340 L KG KF +A+ + K G P+ + ++ L K Sbjct: 147 KAIIDQLGKGGKFADIAKAKSKDPGSAPNGGDLDWANPNSFVPEFSQAMVGLKKGEYTKT 206 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + FGY + +++ + + +E++ + +M K E Sbjct: 207 PVKSQFGYHVILLADTRQATPPKLEEIRPQLEQKMINDKWEE 248 >gi|332530714|ref|ZP_08406644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] gi|332039835|gb|EGI76231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis ATCC 19624] Length = 266 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++ +++ + Q Y++ E ++ P + EA LKKG KF L Sbjct: 110 ARFQQTNPVTDADFQEGYQRFVAANGGKEY-HARHILVPTEAEAQALLAQLKKGAKFDAL 168 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K + G ++ A ++ +L K + FG+ + V ++ Sbjct: 169 AKQHSKDPGSAARGGDLDWAPAQGYVPEFAAALQALGKGQTSEAPVQTQFGWHLLQVEDV 228 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + S +VK +A ++ K E K+ + + Sbjct: 229 RDIQLPSLNDVKPQLAQEIGQRKFEEFQKDLRAKAK 264 Score = 40.7 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558 ++A L+ + K+G F + K + + +D + + + + + + Sbjct: 149 EAEAQALLAQL-KKGAKFDALAKQHSKDPGSAARGGDLDWAPAQGYVPEFAAALQALGKG 207 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P++ + + +V + + + + L Q + + + L+++ + Sbjct: 208 QTSEAPVQTQFGWHLLQVEDVRDIQLPSLNDVKPQLAQEIGQRKFEEFQKDLRAKAKIK 266 >gi|326317152|ref|YP_004234824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373988|gb|ADX46257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 261 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K +++ E+QAEY+K E + ++ + +A S+KKG KF + Sbjct: 105 ADYQKANPVTDAEIQAEYDKYVAANTGKEYK-ASHILVETEDQAKAIIASIKKGAKFEDI 163 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++Q K + G P ++ L K + FG+ + + ++ Sbjct: 164 AKKQSKDPGSGARGGDLDWATPSSYVAEFTQALVKLDKGKMTQTPVKTQFGWHVIRLDDV 223 Query: 357 KPSFTVSFQEVKKDI 371 + + EVK I Sbjct: 224 REAKLPKLDEVKPQI 238 >gi|304394142|ref|ZP_07376065.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130] gi|303293582|gb|EFL87959.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130] Length = 277 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 82/227 (36%), Gaps = 12/227 (5%) Query: 178 LLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + Q +F R +++ A+A + +K E + Sbjct: 51 MAQQFAQFPEPQRKARALDALIDIEVFAALAR------KEGIDKDPKLLARMELLNKRAL 104 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 ++ + I++++LQA Y+K + ++ ++EA + LK G Sbjct: 105 HNGYFTQKVQAGITDEQLQARYDKEIGSAPRQKEVKARHILVKTEEEAKAIIEELKSGAD 164 Query: 296 FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F++LA+ + S LG F K + + F L + FG+ I Sbjct: 165 FVELAKTKSTGPSGPQGGDLGFFKKGQMV-PEFEKAAFELEAGKVTETPVKTQFGFHIIK 223 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 V + + +F++ K+ + + +E +K + + + G+ Sbjct: 224 VDETRDTPLPTFEQSKEQLRQLVLTEAYAEAIKTGRESVGADVLDGS 270 Score = 41.9 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 19/125 (15%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 S V VG +++ S + ++Q+ + + LD L+ Sbjct: 24 SAQEDKIVAKVGSEEITQSELDQAM----ADMAQQF------AQFPEPQRKARALDALID 73 Query: 96 GATLDQFIEDIGLEADHGRVWG-EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 G++ D + E+ H + F+ V + GI +++ Sbjct: 74 IEVFAALARKEGIDKDPKLLARMELLNKRALH--NGYFTQKV------QAGITDEQLQAR 125 Query: 155 YTKML 159 Y K + Sbjct: 126 YDKEI 130 >gi|255014827|ref|ZP_05286953.1| parvulin-like peptidyl-prolyl isomerase [Bacteroides sp. 2_1_7] Length = 522 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + +P V ++ K+ A ++ +++G F +LA+E + Sbjct: 221 SRKPNPGRVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 280 Query: 310 IS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L F + + F+L+K GD + V+ FGY I + + K SF+ Sbjct: 281 AKKEGVLPWFGVGEMVQP-FEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGR--PSFE 337 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395 E +K ++ +M E+ E YK ++ + Sbjct: 338 EEEKALSRRMGQ---GERNFELYKAFDDRM 364 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%) Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + PE TV + +EA ++ L+KG+ + + + + + + +P Sbjct: 129 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 187 Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S D+ +SL G + + G+ + V + KP V + + + Sbjct: 188 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRVHVAHILIAFPKDSAI 244 Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + + + + G E+++ + G+ V Sbjct: 245 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKEGVLPWFGVGEMVQPFEQ--- 301 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 F P V G ++ I + Sbjct: 302 ---AAFALSKPGDLSEVVETRFGYHIIKLIDK 330 >gi|257467204|ref|ZP_05631515.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium gonidiaformans ATCC 25563] gi|315918334|ref|ZP_07914574.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692209|gb|EFS29044.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] Length = 549 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 83/567 (14%), Positives = 193/567 (34%), Gaps = 91/567 (16%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57 IRK + + K + ++ + + G S + + +KV Sbjct: 2 AIRKFRK--IMKPVIFIVAIAMIGSGAWLTFTNLLQHHSAGETQYAYQLNGEKVSKVKIA 59 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + +++ G S+ S+ +++ Q ED+ ++ + Sbjct: 60 REENNLMEQLNKM-GQGKTSKELVSL----IAFQKVINDELTLQLAEDMKIKVPSSEIKE 114 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-- 175 E + +++ + + F L+ +G ++K + + L V+ F + S Sbjct: 115 EYEK-----IENSIGNKEQFKRMLSVQGYSKKSFKAMLEENLLLQKVMEKFAEEAKKSGK 169 Query: 176 -------NLLLDQAKRFYFENRSVDYIVLNNRHVPAI----------------------- 205 L + + S +Y L + V Sbjct: 170 DGNLLFQEALAKKRNEMKIDKLSPEYEKLQLKVVEEKDGFKITNVDMADRVTQLMLMTGE 229 Query: 206 --ADPSNAVLTQWFEKYKDNYRAPEYKRI------------SYILFDVHEKEKKIEISND 251 A + V Q+ E +A E + Y + + +++I Sbjct: 230 EEAKVTEEVKKQFEEGIAFAKKAQEKGVLISKDLPINVQLAEYGKAFFEKLKSEVKIDEV 289 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKKGKKFI---- 297 EL ++ N +Y V+ V +K+A+E +SLKK + F Sbjct: 290 ELSRFFQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKAEETLKSLKK-ENFAKIGA 348 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 L ++ +++ LG F K + ++ FS + + VI FG + ++ ++ Sbjct: 349 DLQKKSPETVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQ 407 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + + + +++A+Q I K+ ++ + ++L++ ++ I++ + + Sbjct: 408 ENKVKAAHILFREVASQASIDKSLKEAESIKEKLDKKEVTFETLKNINKNL-LFAHTFTG 466 Query: 418 VDFAG---KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474 VD +G V K + Y ++ DD K + L + Sbjct: 467 VDKSGVIQGFVTDKALVDTMYAAEMNKVQIYSDDYAKKAGIIYL-------FSKTKQEED 519 Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + LEEV V+ ++++ + +E+ Sbjct: 520 KIVSLEEVQDRVRDEYRSWRAQQELQK 546 >gi|256841003|ref|ZP_05546510.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298375772|ref|ZP_06985728.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 3_1_19] gi|256736846|gb|EEU50173.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298266809|gb|EFI08466.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 3_1_19] Length = 533 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + +P V ++ K+ A ++ +++G F +LA+E + Sbjct: 232 SRKPNPGRIHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 291 Query: 310 IS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L F + + F+L+K GD + V+ FGY I + + K SF+ Sbjct: 292 AKKEGVLPWFGVGEMVQP-FEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGR--PSFE 348 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395 E +K ++ +M E+ E YK ++ + Sbjct: 349 EEEKALSRRMGQ---GERNFELYKAFDDRM 375 Score = 53.8 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%) Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + PE TV + +EA ++ L+KG+ + + + + + + +P Sbjct: 140 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 198 Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S D+ +SL G + + G+ + V + KP V + + + Sbjct: 199 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRIHVAHILIAFPKDSAI 255 Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + + + + G E+++ + G+ V Sbjct: 256 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKEGVLPWFGVGEMVQPFEQ--- 312 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 F P V G ++ I + Sbjct: 313 ---AAFALSKPGDLSEVVETRFGYHIIKLIDK 341 >gi|121594044|ref|YP_985940.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] gi|120606124|gb|ABM41864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42] Length = 261 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +K +++ E+QAEY+K E + ++ + EA S+KKG KF +A Sbjct: 106 DFQKNNAVTDAEIQAEYDKFVAANAGKEYK-ASHILVEKEDEAKAIIASIKKGGKFEDIA 164 Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++Q K + G P +++ L K + FG+ + + +++ Sbjct: 165 KKQSKDPGSGTRGGDLDWASPSSYVAEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVR 224 Query: 358 PSFTVSFQEVKKDI 371 + +EVK I Sbjct: 225 EAQLPKLEEVKPQI 238 >gi|107023645|ref|YP_621972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116690730|ref|YP_836353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] gi|170734072|ref|YP_001766019.1| SurA domain-containing protein [Burkholderia cenocepacia MC0-3] gi|122070635|sp|Q1BTQ6|SURA_BURCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|105893834|gb|ABF76999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia AU 1054] gi|116648819|gb|ABK09460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia HI2424] gi|169817314|gb|ACA91897.1| SurA domain [Burkholderia cenocepacia MC0-3] Length = 452 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 52/410 (12%), Positives = 123/410 (30%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + RL +G+ + + L Sbjct: 95 VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRGRLEAQGVPWSIFTNDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205 + + V G + S+ + + + + + + + A Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 210 Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241 ++A+L Q + + +++P + + L Sbjct: 211 QKKADALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286 I + + E+ ++ + + S V ++ + E Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F + A + G + LG S ++ +L + G + I Sbjct: 331 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V N + + S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVLNRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|219684844|ref|ZP_03539786.1| basic membrane protein [Borrelia garinii PBr] gi|219671789|gb|EED28844.1| basic membrane protein [Borrelia garinii PBr] Length = 336 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 122/374 (32%), Gaps = 84/374 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K FL ++ + I G++ S + ++ V + + + + F + + + + Sbjct: 1 MKSFLFLVILG--IMGIN----SFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + + K++L L++ Q G++ V I F + Sbjct: 51 QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + + + ++G N E + + LS +V + R Sbjct: 102 -LTDEQIKQMIEKQGTNWGELLASMKRSLSSQKLVLK------------------QAQPR 142 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + PS + +++E K + P+ R+S++ F +K++ + Sbjct: 143 -----------FSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHVFFSTKDKKRSDVLDQ 191 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 KN +++ F +EA + + ++ + L + Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 S G + + + +F+ KGD + I G+ I V+ + + Sbjct: 230 SRGDQNAQNLLGADFIKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288 Query: 367 -----VKKDIANQM 375 VK I N M Sbjct: 289 TTDLIVKDAIRNNM 302 >gi|150008996|ref|YP_001303739.1| parvulin-like peptidyl-prolyl isomerase [Parabacteroides distasonis ATCC 8503] gi|149937420|gb|ABR44117.1| parvulin-like peptidyl-prolyl isomerase [Parabacteroides distasonis ATCC 8503] Length = 522 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + +P V ++ K+ A ++ +++G F +LA+E + Sbjct: 221 SRKPNPGRIHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAAS 280 Query: 310 IS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 L F + + F+L+K GD + V+ FGY I + + K SF+ Sbjct: 281 AKKEGVLPWFGVGEMVQP-FEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGR--PSFE 337 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFL 395 E +K ++ +M E+ E YK ++ + Sbjct: 338 EEEKALSRRMGQ---GERNFELYKAFDDRM 364 Score = 53.8 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 15/212 (7%) Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + PE TV + +EA ++ L+KG+ + + + + + + +P Sbjct: 129 FRLPEK-TVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQ 187 Query: 324 S---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S D+ +SL G + + G+ + V + KP V + + + Sbjct: 188 SLKVFEDAAYSLP-IGVVSEPVRTKLGFHLIKVHSRKP--NPGRIHVAHILIAFPKDSAI 244 Query: 381 SE--KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + + + + + G E+++ + G+ V Sbjct: 245 QDSSAFLAKAQAIYKQVQEGADFGELAKEYSGDAASAKKEGVLPWFGVGEMVQPFEQ--- 301 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 F P V G ++ I + Sbjct: 302 ---AAFALSKPGDLSEVVETRFGYHIIKLIDK 330 >gi|145589158|ref|YP_001155755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047564|gb|ABP34191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 263 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 8/158 (5%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K +S +LQA Y+ K +Y E VE ++ + +A +K G F + Sbjct: 101 EDYVEKDGVSEADLQAAYDSVKNQYAGKEY-HVEHILVEKEGDAKAIIVQVKSGGNFEDI 159 Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A+ + G + + LG +++ + + S+ L + FG+ + + Sbjct: 160 AKTKSKDPGSAANGGDLGWVTEKALV-PEFSKSMVQLKNGQMTDKPVKSQFGWHVIKMVE 218 Query: 356 IKPSFTVSFQEVKKDIANQMRITK--ASEKVKEDYKRL 391 ++ + S++E+K + + + K E ++L Sbjct: 219 VRDTKAPSYEELKPQLKQMIVSDQNWQKAKFSEMMQKL 256 >gi|254247257|ref|ZP_04940578.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia PC184] gi|124872033|gb|EAY63749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia PC184] Length = 454 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 52/410 (12%), Positives = 123/410 (30%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 42 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERIQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + RL +G+ + + L Sbjct: 97 VQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRGRLEAQGVPWSIFTNDARTEL 152 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205 + + V G + S+ + + + + + + + A Sbjct: 153 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 212 Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241 ++A+L Q + + +++P + + L Sbjct: 213 QKKADALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQV 272 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286 I + + E+ ++ + + S V ++ + E Sbjct: 273 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 332 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F + A + G + LG S ++ +L + G + I Sbjct: 333 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 390 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V N + + S Q+ + KA + + + L + Sbjct: 391 TEYGYHLIQVLNRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439 >gi|206559288|ref|YP_002230049.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] gi|198035326|emb|CAR51201.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia cenocepacia J2315] Length = 442 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 51/410 (12%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 30 DEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRGQVLNQMVLERIQ 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + +RL +G+ + + L Sbjct: 85 VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRARLEAQGVPWSIFTNDARTEL 140 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVD----YIVLNNRHVPAIADPS 209 + + + V G + S+ + + + + +I A + + Sbjct: 141 TLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 200 Query: 210 NAVLTQWFEKYKD-----------------------NYRAP-----EYKRISYILFDVHE 241 ++ K +++P + + L Sbjct: 201 QKKAEALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVEAASKLRPGQV 260 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286 I + + E+ ++ + + S V ++ + E Sbjct: 261 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDI 320 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F + A + G + LG S ++ +L + G + I Sbjct: 321 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 378 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V N + + S Q+ + KA + + + L + Sbjct: 379 TEYGYHLIQVLNRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 427 >gi|88810558|ref|ZP_01125815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis Nb-231] gi|88792188|gb|EAR23298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis Nb-231] Length = 430 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 50/405 (12%), Positives = 118/405 (29%), Gaps = 75/405 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V + K+EL ++ Q++ + + L ++L+ L+ Sbjct: 31 DRIVAVVNDSVV----LQSELKEELIIVRQQLQRQ-DMQLPDPRNLQHQVLEQLILKKLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 G+ D + + R + N+ + F LA E I +++ D + Sbjct: 86 LDAASRTGISVDDATLDAAVRRV----AEQNQMTLSQFRDALAAEAIGWEDFRDKLRDQI 141 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD---------YIVLNNRHVPAI----- 205 + + + N+ + +F + R + L + P Sbjct: 142 IISRLRHQVMQSRI--NVTPQEIAQFVAQQRGGQSAEYHLGHILVALPDAASPQTIAQAR 199 Query: 206 -----------ADPSNAVLTQWFEKYKDNY--------RAPEYKRISYILFDVHEKEKKI 246 + S L + + + E + L K Sbjct: 200 DKAERIHRQLEQEASFETLAASYSDSQTALQGGDLGWRKQGELPTLIAELISGLPVGKVT 259 Query: 247 EI----SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----EA----DEAFQSLKKG 293 + S + + + + ++ +A + + ++ G Sbjct: 260 PVLRSPSGFHIFKLLARREGERHIITQTHARHILIETNAVVSDRDARRRLESLRKRIENG 319 Query: 294 KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F LA+ LG + + + SL + + + H +G+ Sbjct: 320 DSFAALAKAHSDDSTSAFQGGDLGWVDPGRMV-ATFEQVMDSL-QPDEISQPFHTRYGWH 377 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 I V N + K+D R +A+++++ +L++ Sbjct: 378 IVQVLNRR----------KQDTTEAYRREQAAQQIQNR--KLQDE 410 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 107/382 (28%), Gaps = 57/382 (14%) Query: 79 RARSVGLDKKILDN---LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 A++ L ++LD +V+ + + Q L ++ + + P + Sbjct: 19 EAQTPLLAAQVLDRIVAVVNDSVVLQSELKEELIIVRQQLQRQDMQLPDPRNLQH----- 73 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 L + +L + + G+ + LD A R E + Sbjct: 74 ---QVLEQL-------------ILKKLQLDAASRTGISVDDATLDAAVRRVAEQNQMTLS 117 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 + + +R +I + +I ++ E+ Sbjct: 118 QFRDALAAEAIGWED-------------FRDKLRDQIIISRLRHQVMQSRINVTPQEIAQ 164 Query: 256 EYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQ 303 + + + ++ + +A+ + L++ F LA Sbjct: 165 FVAQQRG--GQSAEYHLGHILVALPDAASPQTIAQARDKAERIHRQLEQEASFETLAASY 222 Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 +L LG + +P +L + S G TPV+ G+ I + + Sbjct: 223 SDSQTALQGGDLGWRKQGELP--TLIAELISGLPVGKVTPVLRSPSGFHIFKLLARREGE 280 Query: 361 TVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + I + + + + L + + G S +++ S Sbjct: 281 RHIITQTHARHILIETNAVVSDRDARRRLESLRKRIENGDSFAALAKAHSDDSTSAFQGG 340 Query: 420 FAGKDVKGKEVAAIPYKEQLLF 441 G G+ VA L Sbjct: 341 DLGWVDPGRMVATFEQVMDSLQ 362 >gi|84684613|ref|ZP_01012514.1| PPIC-type PPIASE domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84667592|gb|EAQ14061.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium HTCC2654] Length = 300 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 6/162 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGK 305 + D +QA Y+ ++ + EA + + K F LA+E Sbjct: 132 AVDEDAIQAAYDAQYADAEPTTEWNASHILVETEAEAADLVEQAKAEDADFAALAKEFST 191 Query: 306 SLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S LG FS + + ++ +A GD + + FG+ + ++ + Sbjct: 192 GPSGPNGGELGWFSAGMMVEP-FETAVADMA-AGDISDPVQTQFGWHVIKLNETREKGAP 249 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 +EV++DI Q++ + E + T++D Sbjct: 250 PLEEVREDIIGQLQTSAVEEALNALMDGATIERTDVTTLDPA 291 >gi|193214030|ref|YP_001995229.1| SurA domain [Chloroherpeton thalassium ATCC 35110] gi|193087507|gb|ACF12782.1| SurA domain [Chloroherpeton thalassium ATCC 35110] Length = 439 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 67/508 (13%), Positives = 142/508 (27%), Gaps = 97/508 (19%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFIN-----SWKQELG 65 + KI +LF+ + G S V VG + + S N +++ ++ Sbjct: 5 LGKIGFALLFM-LALAGSFSKPASAQEMLDGIVAVVGDEAILKSDVDNQAMLYAYQNQIN 63 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 + GL K++ L++ L + + V G + + F Sbjct: 64 --------------LNTPGLWKEVFTALINQKILLMKAKLDSITVSSEEVDGLVEQRIAF 109 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + + + + G + + + +V Sbjct: 110 LRERLRTD----EAIVETFGKSIDMLRVDLREEIKSQRLVEELQRQHF------------ 153 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEK 244 + SN + ++ Y+D+ P +++I+ Sbjct: 154 ------------------SDLTVSNEEVVDFYNTYRDSLPEIPAEVEVAHIVIKPKTDSL 195 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + E + L+ GK F +LA + Sbjct: 196 SKQ------------------------------SALDAIQEVQKELQDGKDFAELARAES 225 Query: 305 KSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + LG F K + F L K+ + ++ FGY I + K Sbjct: 226 QDPGSARLGGDLGFVKRGEFVRRFEEVAFGL-KENQISGIVETEFGYHIIQLLERKGEAI 284 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 +K+ ++ A +++ E E L+ ++R+ L Sbjct: 285 RVRHILKRFDKTKLNDAAAIDQLNEIR---ENVLSGKAEFSMMARQFSEDESSAELGGDI 341 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGK--DDPLSKDHTVALPDGSYM-WVQIKESIPARDRK 478 ++ + + + +SK + L D V++K P Sbjct: 342 VSPQTNQKRIPLDGLLPAIRSIIETLRPGEISKPTRIQLGDEYAFSIVKLKYFAPKHRLN 401 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQL 506 LE+ ++ + AE SS +L Sbjct: 402 LEQDYARLRNMALQRQQAERYSSWVEEL 429 >gi|54293303|ref|YP_125718.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens] gi|81679326|sp|Q5WZN0|SURA_LEGPL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|53753135|emb|CAH14582.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens] Length = 429 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 56/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + V L G+ A V V + S + I + N + Sbjct: 5 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K++L +L+ Q + G+ ++ + I + N + Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188 + ++GI+ +EY + K + + V VG + +N +DQ + Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVDQYLKTAGRIENSNLTYHL 175 Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224 R + + ++ E+ + Sbjct: 176 KNIVIPLSEEPTTRQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235 Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 PE + V + I N +L A +N+ + V ++ Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293 Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326 K+ + ++ ++ GK F +A++ + LG + + Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384 ++ SL + + +G+ + V + E K+ + ++ K E V Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408 Query: 385 KEDYKRLEEFLALGTSMDEIS 405 + + L + +++ Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429 >gi|294102245|ref|YP_003554103.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM 12261] gi|293617225|gb|ADE57379.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM 12261] Length = 358 Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 68/403 (16%), Positives = 134/403 (33%), Gaps = 97/403 (24%) Query: 2 LEIIRKASRTWVAKIFLVVLFVP-FLIWGLSDALFSVSGSST----VVSVGRQKVPFSSF 56 + +R+ R W+ F+V+ + F ++G S + G V + +KV S+ Sbjct: 3 MRSLRENMR-WIMFGFVVIFVLSIFGMYGFSGRQRAPKGEGVQDYAVAEIDGKKVMRSTL 61 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + V + + + + +LD ++ L + +E G++A + Sbjct: 62 EANVMNYVER-----NNVKDVSSNDLMAIRQAVLDGMIIETELAKAVESRGVKASDQEID 116 Query: 117 GEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 I + N+F + + F L+ I + LS+ VV Sbjct: 117 DVIKQI------SNQFPTIEAFQKHLSDNDIKMDALRANIGTQLSQQKVVEQ-------- 162 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA-PEYKRISY 234 + + + ++++K KD + + P +++ Y Sbjct: 163 --------------------------AASTVVVTPEEVQEFYDKGKDAFFSRPAGRKVVY 196 Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-G 293 F N++ AD+ ++ LKK G Sbjct: 197 AR----------------------------------------FSNKEAADKIYEELKKDG 216 Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIH-GSFGYVI 350 K+ L EE S+G + ++P+ + D +L G P I S ++ Sbjct: 217 SKWDALLEEVTSEDKKESIGYEAPVFVPESGMQDKFETLKDLSVGQVAPPIEITSNDIMV 276 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + TVSF EV DI + K E + L+E Sbjct: 277 VLNKEVLEASTVSFDEVSNDIKALLTNQKNEEAQMKFVSELKE 319 >gi|122070668|sp|Q4K4X7|SURA_PSEF5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 426 Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 45/408 (11%), Positives = 132/408 (32%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 19 DKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSV-----LEQQVLERLIVENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S + F + LA +G++ ++ D + + Sbjct: 74 LQIGERSGIRITDEELNQAIGTI----AQRNSMSIEQFRAALAHDGLSYEDARDQVRREM 129 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V ++ S + + + + + L N +P ++ + Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSEAIQSAA 189 Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252 + + Y+ + ++ + + + + + + Sbjct: 190 RQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAVGDIT 249 Query: 253 ----------LQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + +K + V ++ ++ A + + ++ G Sbjct: 250 QPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDRIEAG 309 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L + + + + +G + +G+ Sbjct: 310 EDFAELAKSYSEDPGSALNGGDLNWIDPNALV-PEFRE-VMAKTPQGQLSKPFKSPYGWH 367 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + S + ++ A +R K E+++ +++ + Sbjct: 368 VLEVLGRRATDSTS--QAREQQAMTVLRNRKYDEELQTWLRQIRDEAY 413 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 40/278 (14%) Query: 151 YIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 + L ++ G+R ++ L+QA + S+ Sbjct: 59 LEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNSMSIEQFRAALAHDGLSY 118 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +A R + + ++I++S E++ + K E Sbjct: 119 EDA-------------RDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSE 165 Query: 269 IRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGK---SLSDISLG 313 + ++ P + A+ E +Q LK+G F QLA + +L +G Sbjct: 166 ELHLANILIPTPESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMG 225 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK----- 368 +P + ++A GD T G++I + + + EV Sbjct: 226 WRKAAQLP-PPFDRELSAMA-VGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHIL 283 Query: 369 ---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +I ++ + ++K+ + + E+F L S E Sbjct: 284 IKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSE 321 Score = 41.9 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 34/312 (10%), Positives = 102/312 (32%), Gaps = 52/312 (16%) Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 S+++ + + + +R + +E+++ + ++ FLA ++S + +I +P Sbjct: 117 SYEDARDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 176 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + A + Q L F + AL G W + + P Sbjct: 177 PESANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPF 236 Query: 476 DRKLE------------------------------EVLTDVK--------KDWKTVKTAE 497 DR+L +V +V + ++ + + Sbjct: 237 DRELSAMAVGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETK 296 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 ++ K + + + G++F ++ K+ + ++ + +V + Sbjct: 297 RLAQK----LYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTP 352 Query: 558 EMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 + P ++ + V +V + + + ++ L + L + + ++ + Sbjct: 353 QGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEA 412 Query: 615 SVTVHDNLIQRY 626 V + ++ Sbjct: 413 YVEIKLPGAEQA 424 >gi|319762261|ref|YP_004126198.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans BC] gi|330825811|ref|YP_004389114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans K601] gi|317116822|gb|ADU99310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans BC] gi|329311183|gb|AEB85598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus denitrificans K601] Length = 261 Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +K +++ E+QAEY+K E + ++ + EA S+KKG KF +A Sbjct: 106 DFQKNNPVTDAEIQAEYDKFVAANAGKEYK-ASHILVAKEDEAKSIIASIKKGAKFEDIA 164 Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++Q K + G P +++ L K + FG+ + + +++ Sbjct: 165 KKQSKDPGSGARGGDLDWANPGSYVPEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVR 224 Query: 358 PSFTVSFQEVKKDI 371 + EVK I Sbjct: 225 DAQLPKLDEVKPQI 238 >gi|254284437|ref|ZP_04959405.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B] gi|219680640|gb|EED36989.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B] Length = 294 Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Query: 237 FDVHEKEKKIEISNDEL--QAEYEKNKEKYFS-PEIRTVEQLVFPNQ----KEADEAF-- 287 F + + ++ + + + + + EY K PE R V ++ + +EA +A Sbjct: 103 FTIAKFKEGLTVPDMSVIAREEYMARKNDIAVVPEKRKVAHILLTCEPGCDREAKKAQLK 162 Query: 288 ---QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD------VSLADSIFSLAKKGDF 338 S+ +G KF LA++ + + G I + + F+L GD Sbjct: 163 DFSASIAEGAKFADLAKQYSEDFASARNGGRLGTAIAKDDGNIAFAFRKASFALENPGDL 222 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 +P + FGY + + I+PS+TV F+ ++ I + +E+V Sbjct: 223 SPPVETLFGYHLIVLEEIEPSYTVPFERLRDQIVQLLEREWTNEQVA 269 Score = 38.0 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 8/122 (6%) Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 E K K +A G +++++ S D G+ G +A Sbjct: 154 REAKKAQLKDFSASIAEGAKFADLAKQY---SEDFASARNGGR--LGTAIAKDDGNIAFA 208 Query: 441 F--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 F F ++P V G ++ V ++E P+ E + + + + T E+ Sbjct: 209 FRKASFALENPGDLSPPVETLFGYHLIV-LEEIEPSYTVPFERLRDQIVQLLEREWTNEQ 267 Query: 499 VS 500 V+ Sbjct: 268 VA 269 >gi|294054384|ref|YP_003548042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita akajimensis DSM 45221] gi|293613717|gb|ADE53872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita akajimensis DSM 45221] Length = 330 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 44/356 (12%), Positives = 105/356 (29%), Gaps = 73/356 (20%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 G+ + + + + + + + R R + +++L N++ Sbjct: 35 GNGIAAIAEGEIITVEQLRREVEPIIPRLRVEARTE-DEFRTRIDQISREVLQNMIDRII 93 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q E+ GL + E + + F+ L +G+ +EY + K Sbjct: 94 IVQAAEEKGLLIPQSYIDQEYNQ--VLANDFGG-DRARFLEYLKFQGLTPREYRETIRKR 150 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + +NR + ++ S + +++ Sbjct: 151 VTVDVMRQ---------------------QNR------------KSQSEMSPERIEEFYV 177 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + K + E + I+ E + Sbjct: 178 RNKLRFYQSESMHLRQIILTPMADES-------------------------------ITL 206 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKK 335 ++ A + L +G F A + + S G + + L+D+ FSL + Sbjct: 207 LRQTAKQVMSDLSEGADFGDTARKYSQDDMRRSGGDWGWIERADL-RTELSDAAFSL-ES 264 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+++ I I + + EV+ I + + A E + + L Sbjct: 265 GNYSQPIELGGTIFILYCEEKRDEMIQPISEVRDIIEDVLVGEIAREAQERWLEEL 320 >gi|161523769|ref|YP_001578781.1| SurA domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189351470|ref|YP_001947098.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] gi|160341198|gb|ABX14284.1| SurA domain [Burkholderia multivorans ATCC 17616] gi|189335492|dbj|BAG44562.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC 17616] Length = 451 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 51/410 (12%), Positives = 114/410 (27%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V ++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + SRL +G+ + L Sbjct: 95 VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIFTADARTEL 150 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIV 196 + + V ++ R N Q RF ++ Sbjct: 151 MLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAA 210 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKKI 246 S A + + + +++P + + ++ Sbjct: 211 QKKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQV 270 Query: 247 EISNDELQAEYE---------KNKEKYFSPE--IRTVEQLVFPNQKEADE---------A 286 + + +E +P+ V ++ + E Sbjct: 271 NPTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + I Sbjct: 331 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQISQPIR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVVGRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|241763913|ref|ZP_04761956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] gi|241366808|gb|EER61240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] Length = 261 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K +++ E+QAEY+K E + ++ + +A S+KKG KF ++ Sbjct: 105 ADYQKNNTVTDAEIQAEYDKFVAANSGKEYK-ASHILVEKEADAKAIIASIKKGAKFEEI 163 Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++Q K + G P +++ L K + FG+ + + ++ Sbjct: 164 AKKQSKDPGSGAKGGDLDWANPASYVSEFTEALIKLDKGKMTDAPVKSQFGWHVIRLDDV 223 Query: 357 KPSFTVSFQEVKKDI 371 + + EVK I Sbjct: 224 RQAQLPKLDEVKPQI 238 >gi|319941683|ref|ZP_08016006.1| hypothetical protein HMPREF9464_01225 [Sutterella wadsworthensis 3_1_45B] gi|319804804|gb|EFW01666.1| hypothetical protein HMPREF9464_01225 [Sutterella wadsworthensis 3_1_45B] Length = 260 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 5/157 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + KK +S+ +LQ YE +K Y E V ++ + +A L KG F + Sbjct: 102 AQDWAKKNPVSDADLQKAYEADKASYGDTEY-QVRHILVKTEDQAKNLISRLAKGADFGK 160 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSN 355 LA+E + ++ + G +P + + FS K G+ + FG+ + + Sbjct: 161 LAQEFSEDTANKAQGGLLGWVVPRSFVPAFGAAFSALKPGEVAQAPVRTQFGFHVVKLEA 220 Query: 356 IKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + SF K I N + K + +E KR Sbjct: 221 KRKAELYPSFDSQKAVIHNALANQKVQQHFQELIKRA 257 >gi|188526979|ref|YP_001909666.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori Shi470] gi|188143219|gb|ACD47636.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori Shi470] Length = 299 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N + + E K Sbjct: 66 PNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLNQTP-EFKAMMEAVKK------QAL 118 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 119 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 178 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 179 KQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGDYTK 237 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 238 TPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|150020160|ref|YP_001305514.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429] gi|149792681|gb|ABR30129.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429] Length = 328 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 104/362 (28%), Gaps = 86/362 (23%) Query: 40 SSTVVSVGRQKVPFSSFIN--SWKQELGMISQKIGFVVNSERARSVGLD------KKILD 91 +STV V + + + + ++ + ISQ N G+ + IL+ Sbjct: 24 TSTVAIVNEEVITLETLNSVADVQKLMVSISQIDQTFFNILSNTEEGIKVILRYKRAILE 83 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 LV + QF E V + + +D + F L + Sbjct: 84 QLVDKYLIVQFAEKYNARPSDEEVKQLVDEQLSNYLRDQGIDEETFNFYLEYANMGS--- 140 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 ++ + K + +V + + + + V A + + Sbjct: 141 LEDFKKRMYLNTLVNLSIENLY--------------------------KAVTKDATITVS 174 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 ++EK D Y P + + + ++ Sbjct: 175 EARDYYEKNIDKYATPTQYDLYLLKLSSDSVARDVK------------------------ 210 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-- 329 + G+ F ++A+E G F + L+ + Sbjct: 211 ----------------NRISGGESFEKVAKELGIDK------YFYEGLSEGEELSQKLWM 248 Query: 330 -FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 A +G I G+ + + I P + F+EVK DI +M +K S E Sbjct: 249 YIKNAPEGAILGPIDDKNGFYLFKILKIIPMRSKPFEEVKHDIIEEMLSSKKSTIWSEFI 308 Query: 389 KR 390 + Sbjct: 309 DK 310 >gi|121997812|ref|YP_001002599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira halophila SL1] gi|121589217|gb|ABM61797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira halophila SL1] Length = 427 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 134/426 (31%), Gaps = 61/426 (14%) Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 L+ GL S + V ++ V S +Q Q+ +++ L Sbjct: 12 LLAGLPTLAASETLDRIVAVADQEVVLASELDQEIEQIRAQFFQRGQQPPPADQ-----L 66 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 +++L+ LV + G++ D + + R N + LA+EG Sbjct: 67 REQVLERLVMQRLQMGHAQGAGIQVDDATLDAAMQRIAA----QNNMTLAQLRDALAQEG 122 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVL------- 197 ++ + + + ++ + V + S +++A +++Y V Sbjct: 123 MDMASFREDLREQITVERLQQAVVQQEVEVSPQEIEEAVEAAAAQDNMEYRVAHIRIGTP 182 Query: 198 -------------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + A + E + D A E +I + L Sbjct: 183 EGASSDDLRAAGERAGQIREQAVDGESDFATLAETFSDAATASEGGKIGWRLPGQLPSAF 242 Query: 245 KIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVF---------PNQ 280 + E + ++ E E ++ + Sbjct: 243 ADVVDGLEPGEISEPVQAADGFHIVKLIDRRSEDAQIVEETRARHILLRPGDGVEEDDVR 302 Query: 281 KEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + D + + +G+ F LA EE G S +G + S + + L + G Sbjct: 303 QRLDSFRERIDEGESFEFLARQYSEEPGAEASGGDIGWTRSGQLV-ASFQERMDEL-EVG 360 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + +G+ I V + + ++ IA Q+ K+ E +++ ++L E Sbjct: 361 EVSEPFRTEYGWHIVRVEDRRERDVTD-DRRRERIAQQIHERKSQEALEQWLRQLREEAY 419 Query: 397 LGTSMD 402 + ++ Sbjct: 420 VDYRLE 425 >gi|317179430|dbj|BAJ57218.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori F30] Length = 299 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KKI+I E+Q Y NK++ F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMT-PDFSKAAFALTPGD 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|238764654|ref|ZP_04625599.1| Chaperone surA [Yersinia kristensenii ATCC 33638] gi|238697146|gb|EEP89918.1| Chaperone surA [Yersinia kristensenii ATCC 33638] Length = 424 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 61/404 (15%), Positives = 127/404 (31%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 16 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQEVP----DDATLRHQILERLIMDNIQ 70 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + D SRLA +G+N Y + K + Sbjct: 71 LQMAKKMGITISDEALDKAIADIAA----QNRMTPDQMRSRLAADGLNYDTYREQIRKEM 126 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 127 LTSEVRNNEVRRRITILPQEVEALAKQVGNQTSGDTELNLSHILIPLPENPSQQQVDQ-A 185 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E + + + + + EL + + + + + Sbjct: 186 EDVANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 245 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 246 VGPIRSGVGFHILKVNDIRGGDNTVSVTEVHARHILLKPSPVMTDDQARAKLAAAAADIK 305 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L KKG+ + +H SF Sbjct: 306 SGKTDFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-KKGEISTPVHSSF 363 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 364 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 406 >gi|171060801|ref|YP_001793150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] gi|170778246|gb|ACB36385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6] Length = 359 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 79/351 (22%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 +VG + + + + L + +K + A +++ D +V+ L Sbjct: 59 ATVGDTVISRADYQRA----LAVAMRKKYYHAKPPEAEFARFRREVGDEVVNRVLLLAEA 114 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 G+ D ++ +A +Y +R Sbjct: 115 RRRGIVPDREQIAATVAGYDA-------------------------QYASSANWQANRDQ 149 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 ++ + + S LL++ + V + +P+ VL + ++ Sbjct: 150 MLAAVLPQLE-SESLLERLGQL----------------VKRVPEPAEPVLRAYHAQHPAL 192 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 + PE R+S IL V + E R + Sbjct: 193 FTEPEQVRLSVILLKVDPSSPQAMWDAA--------------HAEGRQLH---------- 228 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS---KEYIPDVSLADSIFSLAKKGDFTP 340 + L G F LA S + G + +P+ + G + Sbjct: 229 ----RRLLAGADFGDLARLHSGDRSAAAGGQMDYAHRGMLPEAVHG--VVDALPPGGLSA 282 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + G I + + +P+ +F++V+ A + +A + E L Sbjct: 283 PVQLLEGVAILRLDDRRPARLRAFEQVRARAAELWQREQAQARWTELIDTL 333 Score = 42.3 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + + V P V L +G +++ + PAR R E+V + W+ + Sbjct: 265 PEAVHGVVDALPPGGLSAPVQLLEG-VAILRLDDRRPARLRAFEQVRARAAELWQREQAQ 323 Query: 497 EE 498 Sbjct: 324 AR 325 >gi|328542082|ref|YP_004302191.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [polymorphum gilvum SL003B-26A1] gi|326411832|gb|ADZ68895.1| Peptidyl prolyl cis-trans isomerase D signal peptide protein [Polymorphum gilvum SL003B-26A1] Length = 287 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 6/147 (4%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---G 304 I+ EL+A Y+ + E + ++ ++ EA E + L +G F +LA G Sbjct: 122 ITEAELKAAYDTEFAGFEGDEEISARHILVASKDEAAELIKKLDEGADFAELATAHSSDG 181 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVS 363 + LG F++ + ++ G+ + + FG+ + V + + S Sbjct: 182 SAAGGGDLGYFTRGQMV--PEFEAAAFALAAGEHSKEPVESQFGWHVIKVEDKRQQAAPS 239 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 F+EV+ + ++ ++++ E Sbjct: 240 FEEVEAGLRQKLIRDIYTKRIGELKAE 266 >gi|221211271|ref|ZP_03584250.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Burkholderia multivorans CGD1] gi|221168632|gb|EEE01100.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Burkholderia multivorans CGD1] Length = 453 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 51/410 (12%), Positives = 114/410 (27%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V ++ L ++L+ +V Sbjct: 42 DEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLNQMVLERIQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + SRL +G+ + L Sbjct: 97 VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIFTADARTEL 152 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIV 196 + + V ++ R N Q RF ++ Sbjct: 153 MLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAA 212 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKKI 246 S A + + + +++P + + ++ Sbjct: 213 QKKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQV 272 Query: 247 EISNDELQAEYE---------KNKEKYFSPE--IRTVEQLVFPNQKEADE---------A 286 + + +E +P+ V ++ + E Sbjct: 273 NPTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 332 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + I Sbjct: 333 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQISQPIR 390 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 391 TEYGYHLIQVVGRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439 >gi|257092441|ref|YP_003166082.1| SurA domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044965|gb|ACV34153.1| SurA domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 436 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 117/379 (30%), Gaps = 91/379 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + L + ++ G + L++++L+ LV Sbjct: 34 DRIVAVVNDEVITLHELRTRLDGALAQLQRQ-GTQLPPRDV----LERQMLERLVIDKVQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR----EGINEKEYIDHY 155 Q D+G+ L R ++ ++ Sbjct: 89 LQQARDMGVRV----------------------DDAQLEQALQRIAAGNKMSLAQFRAAL 126 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLT 214 K F E R + + R V + S + Sbjct: 127 EKDGI--------------------AFASFREEIRGEMTIARVREREVESKIFISEGEID 166 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + A E +++IL SPE + EQ Sbjct: 167 NYLAGASGQGGAVEEFNLAHILL---------------------------RSPESASPEQ 199 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFS 331 + + + ++ + ++KG++F QLA + L LG S + +P A++ + Sbjct: 200 IQ-KLRAKGEQVAERVRKGEEFAQLAAAYSDAPDGLKGGDLGWRSLDRLP-PLFAEAAAT 257 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD----IANQMRITKASEKVKED 387 L K G+ +P++ S G+ + + + + V++ I ++ + + + Sbjct: 258 L-KVGEVSPLLRSSNGFHLIKLVAKRGGG--TLAAVQQTHARHILIKVNEVVSESEARHK 314 Query: 388 YKRLEEFLALGTSMDEISR 406 + L E + G S E+++ Sbjct: 315 LEGLRERIKHGESFAELAK 333 >gi|238755738|ref|ZP_04617071.1| Chaperone surA [Yersinia ruckeri ATCC 29473] gi|238706030|gb|EEP98414.1| Chaperone surA [Yersinia ruckeri ATCC 29473] Length = 433 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 58/375 (15%), Positives = 118/375 (31%), Gaps = 65/375 (17%) Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 Q+ G + E L +IL+ L+ Q + +G+ + IA Sbjct: 54 QQAGQQIPDE----ATLRHQILERLIMDNIQLQMAQKMGITVSDEALDKAIADIAA---- 105 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FY 186 N+ + D SRLA EG+N Y K + ++V + ++ + Sbjct: 106 QNRMTTDQMRSRLAAEGLNYSTYRAQIRKEMLTSEVRNNEVRRRVNILPQEVESLAKQIS 165 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + + L++ +P +PS + E N A K + + Sbjct: 166 AQTGDDAELNLSHILIPLPENPSQQQVDT-AEDLAKNLVAELKKGADFGKLAIANSADSQ 224 Query: 247 EISN--------DELQAEYEKNKEKYFSPE-----------------------------I 269 + EL + + + + Sbjct: 225 ALKGGQMGWGKLQELPTLFAERLKTTSKGDIVGPIRSGVGFHILKVNDIRGENKSISVTE 284 Query: 270 RTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQ----LAEEQGKSLSDISLGSF 315 ++ + + A +K GK F L+E+ G ++ LG Sbjct: 285 VHARHILLKPSVVMTDDQARAKLQAAANDIKNGKVTFADEAKRLSEDSGSAIQGGDLGWA 344 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S + I D + D++ L KKG+ + +H SFG+ + + + + + K + Sbjct: 345 SPD-IYDPAFRDALLKL-KKGEISAPVHSSFGWHLIQLLDTR-QVDRTDAAQKDRAYRML 401 Query: 376 RITKASEKVKEDYKR 390 K +E+ + + Sbjct: 402 FNRKFAEEAQTWMQE 416 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YRA K + +E +++ I E+++ ++ + + ++ P Sbjct: 124 NYSTYRAQIRKEMLTSEVRNNEVRRRVNILPQEVESLAKQISAQTGDDAELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + A LKKG F +LA + G + + +L Sbjct: 184 PENPSQQQVDTAEDLAKNLVAELKKGADFGKLAIANSADSQALKGGQMGWGKLQELPTLF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 KGD I G+ I V++I+ + ++S EV I + + ++ Sbjct: 244 AERLKTTSKGDIVGPIRSGVGFHILKVNDIRGENKSISVTEVHARHILLKPSVVMTDDQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + G + K +S D G P L ++ Sbjct: 304 RAKLQAAANDIKNGK--VTFADEAKRLSEDSGSAIQGGDLGWASPDIYDPAFRDALLKL 360 >gi|261364046|ref|ZP_05976929.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996] gi|288568080|gb|EFC89640.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996] Length = 328 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 44/358 (12%), Positives = 103/358 (28%), Gaps = 90/358 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + ++ I + + L +++L L++ + Sbjct: 51 SDGIAAIADNEVITRRQLAQAVERARRTIPK-------GTQIGDNELREQVLAQLINQSL 103 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++AD+ + IA +P ++ S +A + + Sbjct: 104 IVQAGKRKNIQADNAEIEAVIAANPSLKTPSASIRREIADSIIA----------EKVRQQ 153 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 R S+ + +A + IA P L Q+ Sbjct: 154 AVMQH--------SRVSDAEVARAIEQAKQQ--------------GIALPEGEPLRQYNA 191 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + E + ++ Y Sbjct: 192 QH---------------ILIKADNENAAAGAESTIRKIY--------------------- 215 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + G + S +LG F+ + +++ L K Sbjct: 216 ---------AQARSGADFAGLARQYSQDGSASSGGNLGWFADGMMV-PPFEEAVHKL-KP 264 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G +P + FG+ I +++++ + T + I + KA + + L E Sbjct: 265 GQVSPPVRTQFGWHIIKLNDVRDAGTPE-ERQHNTIRQYLSRQKAEQAEINLLRELHE 321 >gi|221200089|ref|ZP_03573132.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Burkholderia multivorans CGD2M] gi|221206758|ref|ZP_03579770.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Burkholderia multivorans CGD2] gi|221173413|gb|EEE05848.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Burkholderia multivorans CGD2] gi|221180328|gb|EEE12732.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Burkholderia multivorans CGD2M] Length = 453 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 50/410 (12%), Positives = 114/410 (27%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V ++ L ++L+ +V Sbjct: 42 DEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLNQMVLERIQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + SRL +G+ + L Sbjct: 97 VQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIFTADARTEL 152 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIV 196 + + V ++ R N Q RF ++ Sbjct: 153 MLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAA 212 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKKI 246 S A + + + +++P + + ++ Sbjct: 213 QKKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQV 272 Query: 247 EISNDELQAEYE---------KNKEKYFSPE--IRTVEQLVFPNQKEADE---------A 286 + + +E +P+ V ++ + E Sbjct: 273 NPTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 332 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 333 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQISQPVR 390 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 391 TEYGYHLIQVVGRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 439 >gi|241889428|ref|ZP_04776729.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379] gi|241863971|gb|EER68352.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379] Length = 312 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 98/297 (32%), Gaps = 87/297 (29%) Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 E + L K ++ LD++ I ++ ++ + D F Sbjct: 45 ESIGASQLSKTATSMMIQKVLLDKYKNKIDQKSIDEQLQKA-------QEQYGG--KDKF 95 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 L ++G +Y D ++T ++ + G Sbjct: 96 EQLLKQQGFTLDKYKDGLKVKAAQTLLINDYAGT-------------------------- 129 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 ++ L + +EK K Y +++IL V + +S++E Sbjct: 130 -----------NDEKLKESYEKNKHQY------HLAHILISVKSESNPNGLSDEE----- 167 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLG 313 +K+A++ + LK G F LA+E + LG Sbjct: 168 ---------------------AKKKAEDVLKKLKDGGDFATLAKENSNDTANASNGGDLG 206 Query: 314 SFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 SKE D+ ++L+K + V+ SFGY I V + K S SF E+K Sbjct: 207 WSSKEDNSFVKEFKDAAYALSKD-KTSDVVKTSFGYHIIKVLDEKDS---SFDELKP 259 >gi|91215920|ref|ZP_01252889.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755] gi|91185897|gb|EAS72271.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755] Length = 643 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 60/399 (15%), Positives = 143/399 (35%), Gaps = 58/399 (14%) Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKK 335 +++ D+ + +K G F LA++ S G F + + + F L Sbjct: 245 KEQIDKIYVKVKSGDDFHDLAKQYSDDTDTASKGGYVAAFGIGGLNSKTYENEAFQLENI 304 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 GD+T FG+ I + ++P SFQ++K+D+ +++ + S+ + K E Sbjct: 305 GDYTEPFQTKFGWHIVKLIEVEP--IQSFQDIKEDLKKRLKSSSRSKLLVSKIKEDLEAR 362 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA----IPYKEQLLFRVFGKDDPLS 451 +++E++ + ++D + G+ + +++ F+ FG+ Sbjct: 363 YE-VTINEVASSYFLKALDSTFDKMKWRFSPGENLPETYVIKVEDKEVDFKTFGEYLERQ 421 Query: 452 KDHTVALPDGSYM--------------------WVQIKESIPARDRKLEEVLTDV----- 486 + LP + V+I + R EE + Sbjct: 422 QRKLSKLPKHKIVIENALNDMVYNELLAHHKTQLVEIDQDFANRI---EEYKNGILIFDY 478 Query: 487 --KKDWKTVKTAEEVSSK-----ANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMD 538 W+ + + ++ V + EG+ + K+ + + + +D Sbjct: 479 MSTNVWEPISKDTLLQRDYYTSNQDEFVADSKIEGQLYTSASKSSIKDVRSRLKEKMTLD 538 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYV--------VFKVTNSKVGPVQEK 587 + D I + S P K + G+S + + K V E Sbjct: 539 TISIQLPDDVILEQVSIPKSSSKIPKALKFKEGVSKIYKHLDQYLIMNAIEVKPSFVPEF 598 Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626 +K + + + + +I+ L+ QY++ ++ +++++ Sbjct: 599 NKVSGKIISSLQEKREEQLISNLRDQYTMKINKDILEKL 637 Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 51/430 (11%), Positives = 136/430 (31%), Gaps = 51/430 (11%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 + +++ D + + + Y E++ ++ Y + + Sbjct: 72 IKSAYDQELDTLNSYQKEFSKYYKQIADSYISNGEVTEAMVKEAYGRTRT------EVRA 125 Query: 273 EQLVFPNQK----------EADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKE 318 ++ K A + + G+ F LA++ + S + +L F+ Sbjct: 126 SHILLNLSKYEEDTAKVYNRALVLMKRAENGEDFGMLAKQNSEDPSAQRNEGNLNWFNTF 185 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + D + L G+ + + FGY I + + S K + + Sbjct: 186 KMV-YEFEDVAYKL-DVGEISKPVRSDFGYHIIKKTGERAS--------KGKLKTAHIMV 235 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 + +++ +++++ S D+ K S D G + Sbjct: 236 VNKDSLRDPKEQIDKIYVKVKSGDDFHDLAKQYSDDTDTASKGGYVAAFG--IGGLNSKT 293 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 F ++ G + V++ E P + +++ D+KK K+ ++ Sbjct: 294 YENEAFQLENIGDYTEPFQTKFG-WHIVKLIEVEP--IQSFQDIKEDLKKRLKSSSRSKL 350 Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLL--TTNQINRMDNENKFFGYDGISQVFSGP 556 + SK + + + ++ + L T +++ + + + +V Sbjct: 351 LVSKIKEDLEARYEV--TINEVASSYFLKALDSTFDKMKWRFSPGENLPETYVIKVEDKE 408 Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 V+ + K+ K+ + +N + + ++A+ K+Q V Sbjct: 409 VDFKTFGEYLERQQRKLSKLPKHKI-----------VIENALNDMVYNELLAHHKTQL-V 456 Query: 617 TVHDNLIQRY 626 + + R Sbjct: 457 EIDQDFANRI 466 Score = 41.9 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 9/165 (5%) Query: 228 EYKRISYILFDVHEKEKKIEISNDEL--QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 E + ++FD IS D L + Y N++++ + + ++ + Sbjct: 467 EEYKNGILIFDYMSTNVWEPISKDTLLQRDYYTSNQDEFVADSKIEGQLYTSASKSSIKD 526 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK+ ++ + + + IP S + +L K + + Sbjct: 527 VRSRLKEKMTLDTISIQLPDDVI------LEQVSIPKSS-SKIPKALKFKEGVSKIYKHL 579 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 Y+I + +KPSF F +V I + ++ + + + + Sbjct: 580 DQYLIMNAIEVKPSFVPEFNKVSGKIISSLQEKREEQLISNLRDQ 624 >gi|26987145|ref|NP_742570.1| survival protein SurA [Pseudomonas putida KT2440] gi|24981777|gb|AAN66034.1|AE016232_7 survival protein SurA [Pseudomonas putida KT2440] Length = 439 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 51/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LAR+G++ + + + + Sbjct: 86 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 141 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V ++ S + + + + L N +P ++ + + Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 201 Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252 K D Y+ ++ + D + + + Sbjct: 202 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 261 Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292 E R V ++ ++ A+ + +K Sbjct: 262 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKN 321 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G T +G+ Sbjct: 322 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 379 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + ++ ++ A + +R K E+++ +++ + Sbjct: 380 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 426 Score = 38.4 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%) Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 KA+ KV + Y++L + G ++ + + ++ Sbjct: 198 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 247 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495 ++ + +P+G ++ ++++E + L +EV + Sbjct: 248 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 303 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 +E + + + + + K G++F ++ K+ + ++ + + + Sbjct: 304 SEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 363 Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612 + V P + + V +V + E+ + +S L + L + + ++ Sbjct: 364 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 423 Query: 613 QYSVTVHDNLIQRY 626 + V + + Sbjct: 424 EAYVEIKLPGADQA 437 >gi|154494369|ref|ZP_02033689.1| hypothetical protein PARMER_03724 [Parabacteroides merdae ATCC 43184] gi|154085813|gb|EDN84858.1| hypothetical protein PARMER_03724 [Parabacteroides merdae ATCC 43184] Length = 532 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 56/397 (14%), Positives = 125/397 (31%), Gaps = 64/397 (16%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF-INSWKQELGMISQKIGFVVNSE 78 +L + + ++ VS S V++V +++P F + K +S + E Sbjct: 10 LLVLSLVFACMTGNA-QVSVDSVVMTVAGKQIPLDEFIFIAQKNSEVNLSDRKSVNAYVE 68 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 ++ L ED+GL+ ++ F + D + Sbjct: 69 LFKNFKLK-------------VAEAEDLGLD-----------KTKAFKDE-----LDSYR 99 Query: 139 SRLAREGINEKEYI--------DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 ++L +++K+ D Y ++L + ++ + + K R Sbjct: 100 AQLTSSYLSDKDGEEAAVRAVYDRYGEVLELSHILFRLPQRTLSKDTVPVYQKAIEAYER 159 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS- 249 + V ++ + + P ++ + + Sbjct: 160 IQ--AGEDFAAVGKELKDADKENVGYEYVHC---LLPMQTVKAFENVAYSLPVGSVSLPV 214 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFI 297 + K + +P + V ++ P +K+ A+E ++ K G F Sbjct: 215 RTTMGFHIIKIHSRRRNPGLVRVAHVLIPFEKDSVKFGEAETLARAEEVYRKAKDGADFA 274 Query: 298 QLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA+E G F + + + F+L G+ + + FGY I + Sbjct: 275 MLAKEYSSDAGSAKRGGELPAFGVGEMVEP-FEVAAFALNTPGELSRPVKTRFGYHIIKL 333 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 K SF + KK + QM + + + + Sbjct: 334 IEKK--GIPSFDDKKKAWSRQMAQGERNFEYYGAFDE 368 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 90/272 (33%), Gaps = 55/272 (20%) Query: 250 NDELQAEYEKNKE-------KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 ++A Y++ E + P RT+ + P ++A EA++ ++ G+ F + Sbjct: 114 EAAVRAVYDRYGEVLELSHILFRLP-QRTLSKDTVPVYQKAIEAYERIQAGEDFAAV--- 169 Query: 303 QGKSLSDISLGSFSKEYI-------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 GK L D + EY+ + + +SL G + + + G+ I + + Sbjct: 170 -GKELKDADKENVGYEYVHCLLPMQTVKAFENVAYSLP-VGSVSLPVRTTMGFHIIKIHS 227 Query: 356 IK--PSFTV------SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + P F+ K + T A +E Y++ ++ G +++ Sbjct: 228 RRRNPGLVRVAHVLIPFE--KDSVKFGEAETLAR--AEEVYRKAKD----GADFAMLAKE 279 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAI---PYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 AG +G E+ A E F + P V G Y Sbjct: 280 Y---------SSDAGSAKRGGELPAFGVGEMVEPFEVAAFALNTPGELSRPVKTRFG-YH 329 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 +++ E ++ K W Sbjct: 330 IIKLIEKK--GIPSFDDKK----KAWSRQMAQ 355 >gi|34498388|ref|NP_902603.1| signal peptide protein [Chromobacterium violaceum ATCC 12472] gi|34104242|gb|AAQ60601.1| probable signal peptide protein [Chromobacterium violaceum ATCC 12472] Length = 260 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 29/262 (11%) Query: 155 YTKMLSRTDVVGMFVGGMRP-----------SNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 K+L +T +V F G S+ +D + + R Sbjct: 1 MRKILLQTALVAAFAGSAIAVAGPSVNGQPISDARVDAVVKMMEAQ--GQNVNPQARDQI 58 Query: 204 AIADPSNAVLTQWFEKYKDNY-RAPE-------YKRISYILFDVHEKEKKIEISNDELQA 255 + VL Q E K ++PE + ++ + + EK +S +L+A Sbjct: 59 KDQLVTAEVLRQ--EAVKKGLDKSPEFNAELQNMQAMALANRLIKDYEKANPLSEADLKA 116 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DIS 311 EY+K + ++ ++ EA +LKKGK F +LA+E+ + Sbjct: 117 EYDKLAASVPETKQFHARHILVKSEAEAKSVIDALKKGKSFDKLAKEKSQDPGSKANGGD 176 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS-FQEVKKD 370 LG ++++ LAK + +G+ + + +++ V +E++ Sbjct: 177 LGWQEAGTFV-APFSEAMSKLAKGEVTAKPVKTEYGWHVIKLDDVRTQRNVPQLEEIRPQ 235 Query: 371 IANQMRITKASEKVKEDYKRLE 392 + ++ + + V E + + Sbjct: 236 LTQRVMGARIEKYVAELKAKAQ 257 >gi|317010455|gb|ADU84202.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori SouthAfrica7] Length = 299 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 23/232 (9%) Query: 175 SNLLLDQAKRFYFE---NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 N D+ K E +++ ++ N D + E K Sbjct: 65 PNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLDQTP-EFKAMMEAVK------RQAL 117 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL- 290 + + E+ KKI+I E+Q Y NK++ F + ++ + EA + Sbjct: 118 VEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEID 177 Query: 291 -----KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 KK KFI+LA + LG F K + + + F+L Sbjct: 178 KQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGTYTK 236 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++++ K I ++ E++ + + L Sbjct: 237 TPVKTEFGYHIIYLISKDSPITYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 288 >gi|167465904|ref|ZP_02330993.1| peptidyl-prolyl cis-trans isomerase D, putative [Paenibacillus larvae subsp. larvae BRL-230010] Length = 353 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 25/168 (14%) Query: 247 EISNDELQAEYEKNKEKYFSP-EIRTVEQLVF--------------PNQKEADEAFQSLK 291 +++ DE + Y++N + + E+ V ++ + A E L+ Sbjct: 157 QVTEDETKKAYDENLAQEPNAYEVEDVSHILIGLKDQEGKDLRNKDEAKTRALEVKGKLE 216 Query: 292 KGKKFIQLAEEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 KG+ F LA+E G +S+ + +SL + + + Sbjct: 217 KGEDFAALAKEYSDDPGSKDKGGKYEKVDYSQMMQFVEPFKQAAWSLEEN-KISDPVETD 275 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY I V N K ++ EVK I +Q+ K + ++++ +L E Sbjct: 276 YGYHIMKVENRKK---QTYDEVKDQIRSQLSQKKMRDYIEQEVPKLIE 320 >gi|299529221|ref|ZP_07042666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] gi|298722844|gb|EFI63756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] Length = 263 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 6/155 (3%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E YK + LFD + KK +++ E +AEY+K E + ++ Sbjct: 87 EAYKQQMEMARQTVLIRALFD--DFRKKNPVTDAEAKAEYDKFVAANGGKEYK-ASHILV 143 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334 ++ A +K GKKF +A+++ K + G P+ +++ L K Sbjct: 144 ESEDRAKAIIAEVKAGKKFEDIAKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKK 203 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 + FG+ I + + + + F++VK Sbjct: 204 GEMTDAPVKSQFGWHIIRMDDERQAEMPKFEDVKP 238 >gi|264679103|ref|YP_003279010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] gi|262209616|gb|ACY33714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] Length = 263 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 6/155 (3%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E YK + LFD + KK +++ E +AEY+K E + ++ Sbjct: 87 EAYKQQMEMARQTVLIRALFD--DFRKKNPVTDAEAKAEYDKFVAANGGKEYK-ASHILV 143 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAK 334 ++ A +K GKKF +A+++ K + G P+ +++ L K Sbjct: 144 ESEDRAKAIIAEVKAGKKFEDIAKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKK 203 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 + FG+ I + + + + F++VK Sbjct: 204 GEMTDAPVKSQFGWHIIRMDDERQAEMPKFEDVKP 238 >gi|148545689|ref|YP_001265791.1| SurA domain-containing protein [Pseudomonas putida F1] gi|148509747|gb|ABQ76607.1| SurA N-terminal domain [Pseudomonas putida F1] Length = 439 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 52/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LAR+G++ + + + + Sbjct: 86 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 141 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V ++ S + + + + L N +P ++ + + Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 201 Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252 K D Y+ ++ + D + + + Sbjct: 202 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 261 Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292 E R V ++ Q+ A+ + +K Sbjct: 262 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATQQLAERLYDRIKN 321 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G T +G+ Sbjct: 322 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 379 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + ++ ++ A + +R K E+++ +++ + Sbjct: 380 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 426 Score = 38.0 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%) Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 KA+ KV + Y++L + G ++ + + ++ Sbjct: 198 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 247 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495 ++ + +P+G ++ ++++E + L +EV + Sbjct: 248 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 303 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 +E + + + + + K G++F ++ K+ + ++ + + + Sbjct: 304 SEAATQQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 363 Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612 + V P + + V +V + E+ + +S L + L + + ++ Sbjct: 364 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 423 Query: 613 QYSVTVHDNLIQRY 626 + V + + Sbjct: 424 EAYVEIKLPGADQA 437 >gi|224532128|ref|ZP_03672760.1| basic membrane protein [Borrelia valaisiana VS116] gi|224511593|gb|EEF81999.1| basic membrane protein [Borrelia valaisiana VS116] Length = 336 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 51/374 (13%), Positives = 118/374 (31%), Gaps = 84/374 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K FL ++ + + + S + ++ V + + + + F + + + + Sbjct: 1 MKSFLFLIILGTVG------INSFAQNTPVAIINLYKNEIITKTGFDSK----VDIFKKT 50 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + K++L L++ Q G++ V I F + Sbjct: 51 QGRDLTVAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 + + + ++G N E + + LS +V Sbjct: 102 -LTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLV------------------------- 135 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + + PS + +++E K + P+ R+S++ F +K++ + Sbjct: 136 ----LKQAQPKFSEVKTPSEKEIIEYYEANKTKFVNPDIARVSHVFFSTKDKKRSDVLDQ 191 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 KN +++ F +EA + + ++ + L + Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 S G + + + +F+ KGD + I G+ I V+ + + Sbjct: 230 SRGDQNAQNLLGADFMKEVFNF-NKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSP 288 Query: 367 -----VKKDIANQM 375 VK I N M Sbjct: 289 TTDLIVKDAIRNNM 302 >gi|259907387|ref|YP_002647743.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia pyrifoliae Ep1/96] gi|224963009|emb|CAX54492.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia pyrifoliae Ep1/96] gi|283477220|emb|CAY73127.1| survival protein SurA precursor [Erwinia pyrifoliae DSM 12163] gi|310765112|gb|ADP10062.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia sp. Ejp617] Length = 431 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 55/378 (14%), Positives = 122/378 (32%), Gaps = 60/378 (15%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ LV L Q + GL+ ++ IA + NK S D SR Sbjct: 62 DDKTLRHQILERLVMDNILLQKAKQAGLQISDAQLDQAIANI----AQQNKISVDQLRSR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAK-RFYFENRSVDYIVLN 198 LA +G+N Y + K ++ +V + +D + +N + + ++ Sbjct: 118 LAYDGMNYASYREQIRKEMATAEVRNNEVRRRVTILPQEVDSLATQLASQNSAGTELNIS 177 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250 + +P +P+ + E + + + + Sbjct: 178 HILLPLPENPTQQQVDDQ-ENLAKQLVSEAKGGADFGKLAIANSADPQALKGGNMGWGRI 236 Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFP--- 278 EL + + + + ++ Sbjct: 237 QELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDSQSISVTEVHARHILLKPSP 296 Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADS 328 +++ + +K GK F A++ + +LG +S + D + D+ Sbjct: 297 VMTDDQARQKLQQVANEIKSGKLTFSDAAKQLSQDPGSANLGGDLGWSSAEVYDPAFRDA 356 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + L KKG +H SFG+ + + + + KK+ A ++ + + + + Sbjct: 357 LLRL-KKGQIGDPVHSSFGWHLIQLMDTRKVDKT--DAAKKERAYRLLFNRKFAEEAQTW 413 Query: 389 KRLEEFLALGTSMDEISR 406 + E A +D ++ Sbjct: 414 MQEERAAAYVKILDANAQ 431 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 45/308 (14%), Positives = 104/308 (33%), Gaps = 40/308 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ++ + G++ S+ LDQA + + L +R Sbjct: 73 RLVMDNILLQKAKQAGLQISDAQLDQAIANIAQQNKISVDQLRSRL-------------A 119 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + +YR K ++ +E +++ I E+ + + + + + + Sbjct: 120 YDGMNYASYREQIRKEMATAEVRNNEVRRRVTILPQEVDSLATQLASQNSAGTELNISHI 179 Query: 276 VFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + P + A + K G F +LA + G+ I ++ Sbjct: 180 LLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIANSADPQALKGGNMGWGRIQEL 239 Query: 324 S--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK-----DIANQM 375 A ++ + AKKGD + G+ I V++++ S ++S EV + M Sbjct: 240 PSLFAQALVT-AKKGDIIGPVRSGVGFHILKVNDMRGDSQSISVTEVHARHILLKPSPVM 298 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +A +K+++ ++ + + + +++ S D + G P Sbjct: 299 TDDQARQKLQQVANEIK---SGKLTFSDAAKQL---SQDPGSANLGGDLGWSSAEVYDPA 352 Query: 436 KEQLLFRV 443 L R+ Sbjct: 353 FRDALLRL 360 >gi|217031935|ref|ZP_03437437.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128] gi|298736882|ref|YP_003729412.1| peptidylprolyl isomerase [Helicobacter pylori B8] gi|216946404|gb|EEC25009.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128] gi|298356076|emb|CBI66948.1| peptidylprolyl isomerase [Helicobacter pylori B8] Length = 299 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 20/212 (9%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 + ++ N D + E K + + E+ KKI+I Sbjct: 86 IRTALVENEAKTEKLDSTP-EFKAMMEAVKK------QALVEFWAKKQAEEVKKIQIPEK 138 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLAEEQGK 305 E+Q Y NK++ F + ++ + EA + KK KFI+LA Sbjct: 139 EMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELANRDTI 198 Query: 306 SLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + LG F K + + + + F+L + FGY I ++ + Sbjct: 199 DPNSKNAQNGGDLGKFQKNQMA-LDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISKDSP 257 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 T ++++ K I ++ E++ + + L Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|194332867|ref|YP_002014727.1| SurA domain [Prosthecochloris aestuarii DSM 271] gi|194310685|gb|ACF45080.1| SurA domain [Prosthecochloris aestuarii DSM 271] Length = 439 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 67/471 (14%), Positives = 138/471 (29%), Gaps = 98/471 (20%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 V +I + + + F + L + + V VG + V S + Sbjct: 5 VFRILVALALLCFAGVPV---LRAATVDRIVAIVGNEIVLQSEIEQ---------QAVMT 52 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + E A++ L +ILDNLV + + + + + + F Sbjct: 53 ELQYPEMAKAKDLRGRILDNLVMQKIVLTKARLDSVNVNESDIDKQT-------DERLMF 105 Query: 133 SHDVFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 F S E K Y + ++ Sbjct: 106 LRSRFPSIEEMEKTFSKSYAMIEKEIKDDIRNQQLIDNLR-------------------- 145 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEI 248 R + S + ++ +++D PE +IS I+ Sbjct: 146 ----------RQKMSGVTVSYDEVEDFYRQHRDELPSIPESVQISQIIMYPQ-------- 187 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQG 304 +PE + + + + Q L +G F ++A ++ G Sbjct: 188 ----------------VTPENKAKARSLIED------VQQRLLEGADFDEMARRYSQDPG 225 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + LG + ++ FSL K G+ + ++ FGY I + + + Sbjct: 226 SAEVGGDLGYSKRGEFVKP-YEEAAFSL-KDGEISAIVESRFGYHIIQLLEKEGDRVHTR 283 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 + + A EK++E + LA + E++ + + Sbjct: 284 HILAVFDRTTLDRDAAKEKLEEIRS---DVLAGKATFAEMASTYSEDPLSSLNGGMI-QQ 339 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLS---KDHTVALPDGS--YMWVQIKE 470 G+ + ++ L V K D K + P+G Y ++ + Sbjct: 340 ADGEGLFPSASLKEPLKSVVAKLDEPGAISKPMLINAPEGEPFYALFRLDK 390 >gi|222111223|ref|YP_002553487.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus TPSY] gi|221730667|gb|ACM33487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus TPSY] Length = 261 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + +K +++ E+QAEY+K E + ++ + EA S+KKG KF +A Sbjct: 106 DFQKNNAVTDAEIQAEYDKFVAANAGKEYK-ASHILVEKEDEAKAIIASIKKGGKFEDIA 164 Query: 301 EEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++Q K + G P +++ L K + FG+ + + +++ Sbjct: 165 KKQSKDPGSGARGGDLDWASPSSYVAEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVR 224 Query: 358 PSFTVSFQEVKKDI 371 + +EVK I Sbjct: 225 EAQLPKLEEVKPQI 238 >gi|149927949|ref|ZP_01916199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] gi|149823388|gb|EDM82621.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp. MED105] Length = 456 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 62/420 (14%), Positives = 131/420 (31%), Gaps = 66/420 (15%) Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88 G S+ + + V V + S +++ +I +++ + + L K+ Sbjct: 42 GASNGSGAAAIDGIVAVVNTDIITRSEL----NRQVALIERQMSRR-GAPLPDRIELRKQ 96 Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148 +LD +V Q E++G+ + ++ +AR N S + F++RL EG++ Sbjct: 97 VLDRMVMDRAQLQKAEEVGIRIEEAQIEAAMARV----ADQNGLSLEDFLARLQEEGVSP 152 Query: 149 KEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFE------NRSVDYIVL---- 197 + + ++ + ++ S+ + + V+++ L Sbjct: 153 ARFREEVRSEITLGRLREREVEARIQVSDAEIQNYLAARTKGGAAPNQPEVNWVQLLVKA 212 Query: 198 -------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK-----RISYILFDVHEKEKK 245 + L PE ++ + FD Sbjct: 213 PSDASGATLNQARGKVEAIEKALKDGKTVEAIVQTNPELAIDGTGQMGWSGFDAVPTLFS 272 Query: 246 IEISNDELQAEYEKNKEK----YFSPEIR--------------TVEQLVF---PNQKEAD 284 +S +L A E R ++ P+ EA+ Sbjct: 273 EFLSKAQLNAVQTIRSPNGFHVLKVLERRESGAALDSTPVTQTRARHILIRPGPDITEAE 332 Query: 285 E------AFQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 A + L+ G F LA+ + G + LG + L Sbjct: 333 ARRRLNFALEQLQGGAATFDTLAKRYSQDGSASKGGDLGWLYPGDTV-PEFEREMNQLG- 390 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G +PV FG+ I V + S + ++ +R K+ E +E ++L + Sbjct: 391 IGGVSPVFQSRFGFHIIQVVERR-QQAASEERQRQAARQAIRANKSEESYQEWLRQLRDA 449 >gi|78188012|ref|YP_378350.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium chlorochromatii CaD3] gi|78170211|gb|ABB27307.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium chlorochromatii CaD3] Length = 438 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 53/429 (12%), Positives = 127/429 (29%), Gaps = 85/429 (19%) Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ ++ + + + A+ + + IL +V L + + +V Sbjct: 42 FQSDINRRAAMLRAQY-PDLAKEQSVPRNILQGMVEQKLLVTKARLDSVTVESAQVDAT- 99 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 +F + + G+ + + L+ + Sbjct: 100 -TLERLRQIVARFPTK--QAMERQLGMTLPALRESIREELTNQQLADKLR---------- 146 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 R A+A + + ++ + + Sbjct: 147 --------------------RKKTALASVTYDEVMAFYRDNRGQ---------------I 171 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++++ +S + K +PE R Q L+ G F +L Sbjct: 172 APADEQVSVS--------QIIKYAAVTPESRK------EAAAVMQSIQQELQAGADFGEL 217 Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A ++ G + S LG K + F+L K+G+ + V+ +G + + N Sbjct: 218 ARKYSQDPGSATSGGDLGFVRKGQLV-ARFEQVAFAL-KEGEVSEVVETRYGLHLIQMLN 275 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKE----DYKRLEEFLALGTSMDEISRRE--- 408 + V+ + R+ ++++ KE E ++ S + ++R Sbjct: 276 RDDNSI----HVRHILR---RMERSTDDFKEANSTLASAYESVVSGKESFADAAKRLSDD 328 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + + + AG + + + P LL + D + + Y + Sbjct: 329 DVSAARGGQLVAAGASRQTVPLNKLFPQMRSLLGALKVGDVSRPQLIEPPQGEPFYAIFK 388 Query: 468 IKESIPARD 476 + E IPA Sbjct: 389 LNERIPAHP 397 >gi|326330421|ref|ZP_08196729.1| LigA [Nocardioidaceae bacterium Broad-1] gi|325951696|gb|EGD43728.1| LigA [Nocardioidaceae bacterium Broad-1] Length = 345 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 4/139 (2%) Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + YE + +++ +PE R + +V K+A Q +KG+ F LA + G Sbjct: 178 RDYYEAHPDRFMTPEGRELRNIVVRTDKDAQAVVQRARKGEDFAALARANSLDDATRDQG 237 Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 A + F A+ G + FG+ + V I P +F +V+ Sbjct: 238 GALGVVPASSLAGDYAKAAFG-ARSGAVFGPVRTQFGWNVGQVVRIVPGKEPTFDQVEDQ 296 Query: 371 IANQMRITKASEKVKEDYK 389 + +R +A E ++ + Sbjct: 297 ALDVVRSERALETWRDWLE 315 >gi|109946965|ref|YP_664193.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str. Sheeba] gi|109714186|emb|CAJ99194.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str. Sheeba] Length = 298 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 21/228 (9%) Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 + L ++ K+ E ++ +++ N D + + K + + Sbjct: 68 DKLKEEEKKALVEQ-AIRTVLVENEAKTEKLDSTP-EFKAMIDAVKK------QALVEFW 119 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK--- 292 E+ KK++I E+Q Y NKE+ F + ++ ++ EA + K Sbjct: 120 AKKQAEQVKKVKIPEKEMQDFYNANKEQIFVKQEAHARHILVKSEDEAKRIISEIDKQPK 179 Query: 293 ---GKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 KFI+LA + LG F K + + + F+L I Sbjct: 180 TKREAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGNYTKTPIK 238 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FGY I ++ + T ++++ K I ++ E++ + ++L Sbjct: 239 TEFGYHIIYLISKDNPVTYTYEQAKPTIKGMLQEKLFQERMNQKIEQL 286 >gi|42521666|ref|NP_967046.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100] gi|39574196|emb|CAE77700.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100] Length = 307 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 117/358 (32%), Gaps = 73/358 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 TV V + V S F + K+ + + +G K LD L++ L Sbjct: 13 EKTVAIVNSELVLESDFKDLVKRIPKQGMVDESLLFDKPATSLIGNRKAQLDYLINEKIL 72 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 I+ + L + RV E+ + N+ S + ++G++ +Y + Sbjct: 73 QSEIKRLNLAVTNDRVESELKEM----ARKNQVSEAELAKVIQQQGVSMDDYRRFLKDSI 128 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++ + + ++ L ++ + Sbjct: 129 EKRSLMDA----------------------EIISKLRIS----------DEDALNEYLKT 156 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +N + + +S+I F+ + + I Sbjct: 157 NPNNRPSIDEFSVSHIFFNPKKGGAEASI------------------------------- 185 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 K A+ L+ G+ F LA++ + + +LG+F K + ++I SL K Sbjct: 186 -KRAETVLGKLRSGENFENLAQQFSEDPNFSTGGALGTF-KSGEFLPEIEEAISSL-KVN 242 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + TP++ G+ I ++ K + F+ K I Q+ ++K + + Sbjct: 243 ETTPIVKSRMGFHIVKLTGKKLTTDPKFERAKDKIKAQLLENSFKRQLKNWLQTKRDE 300 >gi|77461354|ref|YP_350861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] gi|121956432|sp|Q3K5T4|SURA_PSEPF RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|77385357|gb|ABA76870.1| putative chaperone [Pseudomonas fluorescens Pf0-1] Length = 426 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 45/424 (10%), Positives = 136/424 (32%), Gaps = 60/424 (14%) Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81 + L G + S V V V S + I+++ G + Sbjct: 1 MLGALFLGTAANAAVQSIDRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGLPPPGV-- 58 Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 LD+++L+ L+ Q E G+ + + + N + + F L Sbjct: 59 ---LDQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTI----AQRNNMTPEQFRIAL 111 Query: 142 AREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNN 199 +R+G++ ++ + + + + V ++ S + + + + + L N Sbjct: 112 SRDGLSYEDAREQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLAN 171 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEY-------------------------KRISY 234 +P ++ + K + Y+ + ++ + Sbjct: 172 ILIPTPESANSEAIQSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQ 231 Query: 235 ILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRTVEQLVFP------ 278 + + + + + EK + + V ++ Sbjct: 232 LPPPFDRELSSMATGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRD 291 Query: 279 ---NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLA 333 ++ A + ++ G+ F +LA++ + G P+ + + ++ + + Sbjct: 292 EAKTKELAQSLYNRIEAGEDFAELAKKYSEDPGSALNGGDLNWIDPNALVPEFRAVMAKS 351 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLE 392 +G + +G+ + V + + + ++ ++ A +R K E+++ +++ Sbjct: 352 PQGQLSKPFQTQYGWHVLEVLGRRATDST--EQAREQQAMTVLRNRKYDEELQTWLRQIR 409 Query: 393 EFLA 396 + Sbjct: 410 DEAY 413 Score = 67.7 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 18/196 (9%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---- 284 + + ++I++S E++ + K E + ++ P + A+ Sbjct: 126 RREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSEAI 185 Query: 285 --------EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333 E +Q LK+G F Q+A +L +G +P + S+A Sbjct: 186 QSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQLP-PPFDRELSSMA 244 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392 GD T G++I + + + EV I + + K KE + L Sbjct: 245 -TGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRDEAKTKELAQSLY 303 Query: 393 EFLALGTSMDEISRRE 408 + G E++++ Sbjct: 304 NRIEAGEDFAELAKKY 319 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 99/308 (32%), Gaps = 44/308 (14%) Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 S+++ ++ I + +R + +E+++ + ++ FLA ++S + +I +P Sbjct: 117 SYEDAREQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPT 176 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + A + Q L FG+ + AL G W + + P Sbjct: 177 PESANSEAIQSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQLPPPF 236 Query: 476 DRKLE------------------------------EVLTDVKKDWKTVK----TAEEVSS 501 DR+L ++ +V VK E + Sbjct: 237 DRELSSMATGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRDEAKTK 296 Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561 + Q + + G++F ++ K + ++ + V + + Sbjct: 297 ELAQSLYNRIEAGEDFAELAKKYSEDPGSALNGGDLNWIDPNALVPEFRAVMAKSPQGQL 356 Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P + + V +V + E+ + ++ L + L + + ++ + V + Sbjct: 357 SKPFQTQYGWHVLEVLGRRATDSTEQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEI 416 Query: 619 HDNLIQRY 626 + Sbjct: 417 KLPGADQA 424 >gi|115351951|ref|YP_773790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] gi|115281939|gb|ABI87456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] Length = 260 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ ++++A + +K G KF L Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVESEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222 Query: 357 KPSFTVSFQEVK 368 + F +VK Sbjct: 223 RDVAPPPFDQVK 234 >gi|57505869|ref|ZP_00371794.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter upsaliensis RM3195] gi|57015899|gb|EAL52688.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter upsaliensis RM3195] Length = 273 Score = 88.9 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 11/162 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295 ++ + I++ +++ YEKNKE++ P + ++ N++EA LK K Sbjct: 104 NKIMQDIKVDATKVKEAYEKNKEQFVKPARVKAKHILVTNEQEAKNIINELKGLKDKELE 163 Query: 296 --FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F ++A + G + + LG F + + D+ FSL K + +FGY Sbjct: 164 KKFTEIARTKSIDTGSAANGGDLGWFDESTMVKP-FTDATFSLKKGEITKTPVKTNFGYH 222 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I + + V+F++ K I N+ + + +++ + L Sbjct: 223 IILKQDSRAKEQVAFKDAKMGIENRFKFEEFQKRIGLKGQEL 264 >gi|237749066|ref|ZP_04579546.1| chaperone SurA [Oxalobacter formigenes OXCC13] gi|229380428|gb|EEO30519.1| chaperone SurA [Oxalobacter formigenes OXCC13] Length = 459 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 64/489 (13%), Positives = 143/489 (29%), Gaps = 114/489 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V + + Q+ N K++L++++ Sbjct: 45 DSIAAIVNSDVITKGELNERVTLVEAQLKQQ-----NIALPPRTEFQKQVLEHMIVERAQ 99 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D+GL D ++ IA + N S F + + G +++ + + + Sbjct: 100 LQLAKDMGLRVDDTQLDRTIALM----AEQNHMSLAQFKRQTEQNGTPFEKFREKVREEI 155 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + L +R V ++A + Sbjct: 156 TMS---------------------------------RLRDREVVNKIQINDAEVDNLLGA 182 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + PE R+ +IL + E +I+ + Sbjct: 183 D-SQLQMPEQLRLGHILIRIPENASPEQIAEKRAR------------------------- 216 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 A++ LK G F Q A + LS +G S + +P S D++ + K G Sbjct: 217 ---AEKVLDVLKSGGDFQQTAASYSDADEGLSGGDIGWRSTDRLPK-SFVDALAGV-KPG 271 Query: 337 DFTPVIHGSFGYVIAHVSNIKP--SFTVSFQEVKK--------------DIANQMRITKA 380 + T +I G+ I V + + + S + + +A Sbjct: 272 NVTGIIKSPNGFHILKVLDRRKMTNGAESVASASDKNTVQQIHARHILIKVNQLVSADEA 331 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 K+ + +R+ + + +E+++ + G +P E+ + Sbjct: 332 KRKLIDLRQRI---INKSATFEELAKTYS----NDGSASRGGDLGWIYPGDTVPEFEKAM 384 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 + P + G ++ + L++ DV + K + + + Sbjct: 385 VAL----KPGEISEPIETQFGFHL-----------IQVLDKKTDDVSAERKRIAAKQALR 429 Query: 501 SKANQLVLE 509 + E Sbjct: 430 ERKVAEATE 438 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 16/152 (10%) Query: 265 FSPEIRTVEQLVFPNQK--EADEAFQSL--------KKGKKFIQLAEEQGKSLS---DIS 311 + + ++ + ADEA + L K F +LA+ S Sbjct: 308 NTVQQIHARHILIKVNQLVSADEAKRKLIDLRQRIINKSATFEELAKTYSNDGSASRGGD 367 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG ++ +L K G+ + I FG+ + V + K S + + Sbjct: 368 LGWIYPGDTV-PEFEKAMVAL-KPGEISEPIETQFGFHLIQVLDKKTDDV-SAERKRIAA 424 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 +R K +E +E ++L + + +DE Sbjct: 425 KQALRERKVAEATEEWLRQLRDKAYVEYRLDE 456 >gi|224534854|ref|ZP_03675423.1| basic membrane protein [Borrelia spielmanii A14S] gi|224513794|gb|EEF84119.1| basic membrane protein [Borrelia spielmanii A14S] Length = 336 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 52/374 (13%), Positives = 121/374 (32%), Gaps = 84/374 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70 K FL ++ + + + S + ++ V + + + +SF + + + + Sbjct: 1 MKSFLFLVILGTVG------INSFAQNTPVAIINLYKNEIITKTSFDSK----VDIFKKT 50 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 G + + K++L L++ Q G++ V I F + Sbjct: 51 QGRDLTTAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT--QFGLVN- 101 Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 F+ + + ++G N E + + LS ++ + R Sbjct: 102 -FTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLILK------------------QAQPR 142 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + PS + +++E K + P+ R+S++ F +K++ + Sbjct: 143 -----------FSEVKTPSEKEIIEYYEANKTKFVNPDISRVSHVFFSTKDKKRSDVLDQ 191 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 KN +++ F +EA + + ++ + L + Sbjct: 192 A-------KNILS-----QIRSKKITF------EEAVRKYSNDES----SKAKNGDLGFL 229 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 S + + + +F+ KGD + I G+ I V+ + + Sbjct: 230 SRDDQNAQNLLGSDFIKEVFNF-NKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSP 288 Query: 367 -----VKKDIANQM 375 VK I N M Sbjct: 289 TIDLIVKDAIRNNM 302 >gi|307132630|ref|YP_003884646.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii 3937] gi|306530159|gb|ADN00090.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii 3937] Length = 430 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 65/403 (16%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 + + +V V S INS Q + + +Q+ G + L +IL+ L+ + Sbjct: 26 NKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLP----DDATLRHQILERLIMDNIIL 81 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + +G++ ++ IA N+ S D SRLA EG++ Y K + Sbjct: 82 QMAQKMGVQVTDEQLDRSIANIAA----QNRMSVDQLRSRLAAEGVSFDTYRSQIRKDMI 137 Query: 161 RTDVVGM-FVGGMRPSNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +V + +D + + S + L+ +P +P+ + + E Sbjct: 138 IAEVRNSEVRRRVTVLPQEVDSLAQQIASQGASGPEVNLSQILIPLPENPTQDQVDK-AE 196 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEIS--------NDELQAEYEKN---------- 260 + + + + + EL + + + Sbjct: 197 SLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERLTNPQKGQVI 256 Query: 261 -------------------KEKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292 ++ S ++ + ++ +K Sbjct: 257 GPIRSGVGFHILRVNDTRGGDQSVSVTEVHARHILLRTSVVMNDAQARARLEDIASQIKS 316 Query: 293 GK-KFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 GK F QL+++ G + LG S + D S D++ L KKG+ + +H SFG Sbjct: 317 GKLSFTNAAKQLSQDPGTANQGGDLGW-SSPDMYDPSFRDALTQL-KKGEISAPVHSSFG 374 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + + + + + K + K +E+ + + Sbjct: 375 WHLIQLLDTR-QVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQE 416 >gi|327402945|ref|YP_004343783.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis DSM 16823] gi|327318453|gb|AEA42945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis DSM 16823] Length = 651 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 87/265 (32%), Gaps = 38/265 (14%) Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLA 300 + YE+ K ++ + A + ++ G+ F +A Sbjct: 110 VAQAYERMKN------EVHAAHILVKVVENASPEDTLAAYNRILAIKKRIENGEDFATVA 163 Query: 301 E------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 + + + + LG F+ + ++ + + + G + I FGY I V Sbjct: 164 KGKNGSDDPSAARNGGDLGYFTAFQMV-YQFEEAAY-MTQVGKISNPIRTKFGYHILKVI 221 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE---FLALGTSMDEISRREKIV 411 +I+P+ I E++ + K+++E L G S ++++ Sbjct: 222 DIRPARGT---MKAAHIMVATGKDAGQEELDDARKKVDEIYSKLQNGESFEKLAGEFSDD 278 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 + G +P E+ F + D V G ++ ++ E Sbjct: 279 AQTAEKGGELPLFGTGTTTRMVPEFEEAAFALTANGDI---SKPVQTAFGFHIIKRL-EL 334 Query: 472 IPARDRKLEEVLTDVKKDWKTVKTA 496 P R +E+ +++ + A Sbjct: 335 TP--LRSFDELKKEIQSKVNKDERA 357 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 21/141 (14%) Query: 271 TVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---- 314 ++ K+A DE + L+ G+ F +LA E G Sbjct: 231 KAAHIMVATGKDAGQEELDDARKKVDEIYSKLQNGESFEKLAGEFSDDAQTAEKGGELPL 290 Query: 315 --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 ++ F+L GD + + +FG+ I + P SF E+KK+I Sbjct: 291 FGTGTTTRMVPEFEEAAFALTANGDISKPVQTAFGFHIIKRLELTP--LRSFDELKKEIQ 348 Query: 373 NQM-RITKASEKVKEDYKRLE 392 +++ + +A ++L+ Sbjct: 349 SKVNKDERAIVTQNSFIQKLK 369 >gi|161612428|ref|YP_001586393.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361792|gb|ABX65560.1| hypothetical protein SPAB_00117 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 428 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190 + D SRLA +G+N Y + K + ++V + +D + +N Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249 + + L++ + +P++ + + + E + + + + + Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAENIVEEARNGADFGKLAITYSADQQALK 227 Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272 EL + + + Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287 Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319 ++ N ++A +E +K GK F A+E + + G ++ Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L K G + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSEQVNDAQRQAENIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|157736637|ref|YP_001489320.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018] gi|157698491|gb|ABV66651.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018] Length = 269 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQL 299 KI+++ + + YEKNKEK+ PE ++ + EA + L K +KF +L Sbjct: 107 DKIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKAPNKVEKFKEL 166 Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ + + + +LG F+ E + ++ +LAK + FGY + ++ + Sbjct: 167 SKKSLDTASAKNGGALGRFAVEQMV-PEFGSAVKALAKGTYSKTPVKTQFGYHVIYLKDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 PS T ++ EV+K+I + ++K+KE + L Sbjct: 226 FPSKTFAYTEVEKNINQVLIGNALNKKIKELVEDL 260 >gi|217033999|ref|ZP_03439421.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10] gi|216943507|gb|EEC22958.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10] Length = 299 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KKI+I E+Q Y NK++ F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKIPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|332673018|gb|AEE69835.1| cell binding factor 2 [Helicobacter pylori 83] Length = 299 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KK++I E+Q Y NK++ F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEEL 289 >gi|121956435|sp|Q88QT4|SURA_PSEPK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 427 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 51/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 19 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 73 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LAR+G++ + + + + Sbjct: 74 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 129 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V ++ S + + + + L N +P ++ + + Sbjct: 130 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 189 Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252 K D Y+ ++ + D + + + Sbjct: 190 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 249 Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292 E R V ++ ++ A+ + +K Sbjct: 250 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKN 309 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G T +G+ Sbjct: 310 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 367 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + ++ ++ A + +R K E+++ +++ + Sbjct: 368 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 414 Score = 38.4 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%) Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 KA+ KV + Y++L + G ++ + + ++ Sbjct: 186 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 235 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495 ++ + +P+G ++ ++++E + L +EV + Sbjct: 236 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 291 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 +E + + + + + K G++F ++ K+ + ++ + + + Sbjct: 292 SEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 351 Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612 + V P + + V +V + E+ + +S L + L + + ++ Sbjct: 352 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 411 Query: 613 QYSVTVHDNLIQRY 626 + V + + Sbjct: 412 EAYVEIKLPGADQA 425 >gi|226946688|ref|YP_002801761.1| peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii DJ] gi|226721615|gb|ACO80786.1| Peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii DJ] Length = 432 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 53/413 (12%), Positives = 133/413 (32%), Gaps = 64/413 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + V + + E+ K G + L ++L+ L+ + Sbjct: 33 DRIVAIIDNDVVMQTQLDRRLR-EVEQTIAKRGAQLPPRD----QLVSQVLERLILESIQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q G+ + +A + N + + F + LAR+G++ E + + + Sbjct: 88 LQMGSRAGIRIGDEELAQAMATI----AQRNGLTLEQFQAALARDGLSFDEAREQVRREM 143 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAK-------RFYFENRSVDY-IVLNNRHVPAIADPSN 210 + V V ++ S+ + + E R + I L + P + Sbjct: 144 IISRVRQRVVADRIQISDHEVQNFLASDLGKLQLSEEFRLANITIPLPDGAPPEQIQAAE 203 Query: 211 AVLTQWFEKYKD--NY-----------RAPEYKRISYILFDVHEKEKKIEISND------ 251 + + + + D ++ A E I + +S Sbjct: 204 QQVLEIYRQLSDGADFAQLAITRSAGETALEGGEIGWRRAAQLPPPFDNLVSQLPVGGVT 263 Query: 252 ---------ELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + EK + V ++ ++ + + + G Sbjct: 264 EPVRTPGGYIIIKLLEKRGGSAQIRDEVHVRHILIKPSEIRTDIDARRLIERIHERILNG 323 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L + + + + G+ +P FG+ Sbjct: 324 EDFAELAKSFSEDPGSALNGGDLNWIDPNALV-PEFRE-MMAKTPAGELSPPFKSPFGWH 381 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLALGTSM 401 + V + + + + +V++ A N +R K E+++ +++ + + T + Sbjct: 382 VLEVLGRRATDSST--QVREQQAMNVLRNRKYDEELQSWLRQIRDEAYVETKL 432 Score = 68.5 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 77/271 (28%), Gaps = 38/271 (14%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L + G+R + L QA + + A Sbjct: 80 RLILESIQLQMGSRAGIRIGDEELAQAMATIAQRNGLTLEQFQAALARDGLSFDEA---- 135 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 R + + +I+IS+ E+Q + K E + + Sbjct: 136 ---------REQVRREMIISRVRQRVVADRIQISDHEVQNFLASDLGKLQLSEEFRLANI 186 Query: 276 VFPNQKEAD------------EAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320 P A E ++ L G F QLA + +L +G + Sbjct: 187 TIPLPDGAPPEQIQAAEQQVLEIYRQLSDGADFAQLAITRSAGETALEGGEIGWRRAAQL 246 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIA 372 P D++ S G T + GY+I + + EV +I Sbjct: 247 PPP--FDNLVSQLPVGGVTEPVRTPGGYIIIKLLEKRGGSAQIRDEVHVRHILIKPSEIR 304 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 + + E++ E E+F L S E Sbjct: 305 TDIDARRLIERIHERILNGEDFAELAKSFSE 335 >gi|172060877|ref|YP_001808529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] gi|171993394|gb|ACB64313.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria MC40-6] Length = 260 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 KK + ++ E++A Y++ + + ++ N+++A + +K G KF L Sbjct: 103 ESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFEDL 162 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I +I Sbjct: 163 AKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDI 222 Query: 357 KPSFTVSFQEVK 368 + F +VK Sbjct: 223 RDVAPPPFDQVK 234 >gi|317179979|dbj|BAJ57765.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori F32] Length = 299 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 13/175 (7%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E+ KK++I E+Q Y NK++ F + ++ + EA Sbjct: 116 QALVEFWAKKQAEEVKKVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIIS 175 Query: 289 SL------KKGKKFIQLAEEQGKSLS------DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + KK KFI+LA + LG F K + + + F+L Sbjct: 176 EIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMA-PDFSKAAFALTPGD 234 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + FGY I ++ + T ++ + K I ++ E++ + + L Sbjct: 235 YTKIPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEEL 289 >gi|315453564|ref|YP_004073834.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C [Helicobacter felis ATCC 49179] gi|315132616|emb|CBY83244.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C [Helicobacter felis ATCC 49179] Length = 291 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 75/191 (39%), Gaps = 16/191 (8%) Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 F+ +Y+ + + + E K +I D+L+ Y+ NK+++ E ++ Sbjct: 93 FKSNLASYK--KQLLVEVWVKHRAEIIGKEQIPEDQLKQYYDTNKDRFVQQEA-QARHIL 149 Query: 277 FPNQKEADEAFQSLKKGKK------FIQLAEEQGKSLS------DISLGSFSKEYIPDVS 324 + +A L K K FI++A + LG F K + Sbjct: 150 VKTEADARRIISELNKVPKTKVEHEFIKIANRDSIDPNTKNTKNGGDLGKFQKSQMT-PE 208 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + ++F L + FGY + ++ + T +F + K+ I ++ + E V Sbjct: 209 FSKAVFELRPGTYTKTPVKTEFGYHVVYLMHKSQPVTPTFAQAKQSIIGILKEQQFQEYV 268 Query: 385 KEDYKRLEEFL 395 K + ++L + + Sbjct: 269 KGELEKLRKQV 279 >gi|126662093|ref|ZP_01733092.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38] gi|126625472|gb|EAZ96161.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38] Length = 653 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 121/396 (30%), Gaps = 55/396 (13%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 +L FL A S + ++ F+ + + L ++ ++ Sbjct: 6 LLIFSFLFV---SAFLSAQTKEVLFTIDNHPYYNDEFVRVYNKNLDLVKDDSQKDLD--- 59 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 K LD + + IGL + + + + + + Sbjct: 60 --------KYLDLFLGYKLKVEKANKIGL-----------QNGLNYQNELKSYRNQLSKN 100 Query: 140 RLAREGIN---EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + + KE D + + + ++ + G P + L K + R Sbjct: 101 YVNDSKVTNELVKEAYDRMQQEVRASHILVLVDEGALPQDTLKAYNKVIEIKRRLDAGED 160 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DEL 253 DPS + R+ Y + K ++S Sbjct: 161 FITVAQQTSEDPSVKE-------NNGDLGYFSAFRMVYPFENAAYNTKVGQVSKPFRTRF 213 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------DEAFQSLKKGKKFIQLAEEQ 303 K +K + TV ++ Q +A D+ ++ +++G+ F LA++ Sbjct: 214 GYHIVKVLDKRVNRGEVTVAHIMIVKQNDAAQNEKAKTTIDDIYKKIQQGEAFESLAQQF 273 Query: 304 GKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + S G F + + F L +K + FG+ I + P Sbjct: 274 SEDKSSAPKGGVLQRFGSGQLSSEEFENVAFELKEKDQISVPFQSQFGWHIVKLIEKHP- 332 Query: 360 FTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEF 394 SF E+K ++ ++R + S + K+L + Sbjct: 333 -VRSFDEMKFELEEKIRKDERSLLITNSLAKKLRDK 367 Score = 50.8 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 14/193 (7%) Query: 209 SNAVLTQWFEKYKDNYRAPEYKRI------SYILFDVHEKEKKIEISNDEL--QAEYEKN 260 + L ++ + +N PE+K + +LFD+ EKE ND + + N Sbjct: 449 TEEQLIAYYNENLEN-EFPEFKNVMDEYRDGLLLFDLMEKEIWNRAKNDTIGLHNYFANN 507 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 + Y + + + L ++K ++A + LKKGK + E+ K + SK + Sbjct: 508 IKNYQWKKRYSADILSSTDKKIVEKAQKFLKKGKSLEYIREQLNKD---GKVNIMSKSGM 564 Query: 321 PDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + S F KG + V + + + ++++ KP+ E K + + Sbjct: 565 YEEDYDVLSQFENLSKGVTSIVSKDQY-FFVVNITDEKPAGAKELSECKGKAISDYQQYL 623 Query: 380 ASEKVKEDYKRLE 392 + V E Sbjct: 624 ENNWVDELKSEFN 636 >gi|315635801|ref|ZP_07891063.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] gi|315479780|gb|EFU70451.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22] Length = 269 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG----KKFIQL 299 KI+++ + + YEKNKEK+ PE ++ + EA + L K +KF +L Sbjct: 107 DKIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKASNKVEKFKEL 166 Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++ + + + +LG F+ E + ++ +LAK + FGY + ++ + Sbjct: 167 SKKSLDTASAKNGGALGRFAVEQMV-PEFGSAVKALAKGTYSKTPVKTQFGYHVIYLKDK 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 PS T ++ EV+K+I + ++K+KE + L Sbjct: 226 FPSKTFAYTEVEKNINQVLIGNALNKKIKELVEDL 260 >gi|210634928|ref|ZP_03298375.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279] gi|210158557|gb|EEA89528.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279] Length = 417 Score = 88.5 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 63/411 (15%), Positives = 128/411 (31%), Gaps = 90/411 (21%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS------------GSSTVVSVGRQKV-- 51 RK + KI LV + + ++ +S S +V + Sbjct: 34 RKEKLSKTGKIVLVAIGIAAMLLSVSAMACSGVLNEVQSKEDYKLTGGVAATVNGVNIKE 93 Query: 52 -PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 + I S +Q + ++ + + ++D++V L Q +D G++ Sbjct: 94 DSVTEQIMSMRQSAYESDKDWATYLSQQGMTPETYRENVIDSIVRQYLLVQAEKDYGIKV 153 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 + + + N D FV +++ G ++ Y+++ L++ + G Sbjct: 154 TQEDLDKAWKEA----VEGNGGDEDAFVETISQFGFTKETYLENIKSSLAQQKLREKVAG 209 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 + PS+ + + + Y + + Sbjct: 210 ----------------------------------VKKPSDEDIVAYLNENLSTYN--DAR 233 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 R S+ILF V E + E R + EA + L Sbjct: 234 RSSHILFKVAEDA----------------------TEEERA------KVEAEAQKVLDKL 265 Query: 291 KKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGY 348 G+ +F + AE+ + S + G + + S G + ++ ++GY Sbjct: 266 NAGEIEFAKAAEKYSEDGSAKNGGDVGWDKLTTFVTEYQDALSGLSDGQMSGLVKTTYGY 325 Query: 349 VIAHVSN-IKPSFTVSFQEV----KKDIANQMRITKASEKVKEDYKRLEEF 394 I + S EV + IA +++ T SEK E E Sbjct: 326 HIIKCTGQFNVQTVSSIDEVPEGIRDAIAERIKTTAESEKYSEWLTEYTEK 376 >gi|115525459|ref|YP_782370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] gi|115519406|gb|ABJ07390.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisA53] Length = 353 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 18/190 (9%) Query: 210 NAVLTQWFEKYKDNYRAPEYKR---ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + V+ + +++ + + E R + + DE+Q Y+ N+ + Sbjct: 136 DEVIEKKWDQRPNVVKQLERVRESAVVELYLQSVSTPPDSYPGEDEIQKVYDANRGQLVV 195 Query: 267 PEIRTVEQLVFPNQKEADEA------------FQSLKK-GKKFIQLAEEQGKSLSDISLG 313 P + Q+ + K+AD+A + LK G F +A E+ + LG Sbjct: 196 PRQYQLSQIFIASPKDADKATEDKARKKLEDIQKKLKAPGADFAAIAGEESDAKGSADLG 255 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 S + + + + LAK G + I G+ I +++ K S+T + EV+ +A Sbjct: 256 SIPENQLI-PEIRSHVVGLAK-GAVSDPIRLDAGWHIVKLTDTKASYTRTLPEVRDQLAQ 313 Query: 374 QMRITKASEK 383 QMR +A+ Sbjct: 314 QMRKERAAAL 323 Score = 38.0 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%) Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD--HTVAL 458 +++I ++ K D + D KG + QL+ + L+K Sbjct: 224 LEDIQKKLKAPGADFAAIAGEESDAKGSADLGSIPENQLIPEIRSHVVGLAKGAVSDPIR 283 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 D + V++ ++ + R L EV + + + + A +L+ + Sbjct: 284 LDAGWHIVKLTDTKASYTRTLPEVRDQLAQQMRKERAAALRRGYLAELLKQ 334 >gi|322381189|ref|ZP_08055192.1| molecular chaperone lipoprotein-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154765|gb|EFX47036.1| molecular chaperone lipoprotein-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 351 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 25/168 (14%) Query: 247 EISNDELQAEYEKNKEKYFSP-EIRTVEQLVF--------------PNQKEADEAFQSLK 291 +++ DE + Y++N + + E+ V ++ + A E L+ Sbjct: 155 QVTEDETKKAYDENLAQEPNAYEVEDVSHILIGLKDQEGKDLRNKDEAKTRALEVKGKLE 214 Query: 292 KGKKFIQLAEEQGKSLSDISLG------SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 KG+ F LA+E G +S+ + +SL + + + Sbjct: 215 KGEDFAALAKEYSDDPGSKDKGGKYEKVDYSQMMQFVEPFKQAAWSLEEN-KISDPVETD 273 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY I V N K ++ EVK I +Q+ K + ++++ +L E Sbjct: 274 YGYHIMKVENRKK---QTYDEVKDQIRSQLSQKKMRDYIEQEVPKLIE 318 >gi|302343060|ref|YP_003807589.1| SurA domain protein [Desulfarculus baarsii DSM 2075] gi|301639673|gb|ADK84995.1| SurA domain protein [Desulfarculus baarsii DSM 2075] Length = 327 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 49/380 (12%), Positives = 115/380 (30%), Gaps = 72/380 (18%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIGFV 74 + + FV L+ L + V VG + + + S + + + Sbjct: 6 VIAGLAFVTMAFAPLA-VLAEELVNRVVAVVGDEPITAAELDRSIQGLLQRLQMMQQQQG 64 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 N + + L++L+ ++ +E + + V + R N + Sbjct: 65 QNMAMPPAAEVRYMALNSLIDEKLFNKEVERLKISVSEEEVSMFLERLKA----ANNMTQ 120 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 F++RL G+ +EY + + ++ Sbjct: 121 QEFIARLNETGMTPEEYREKVRNDQLKRKLIN---------------------------- 152 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 V S+ + + ++ PE + + K+ Sbjct: 153 -----YEVKNKVVISDKEVDDYLAEH------PELVQGGGPQLTIQALFLKLP------- 194 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDIS 311 +N ++R +A+ + G F ++ + S Sbjct: 195 ----ENAGDDVKAQLR----------AKAEALREEAVDGADFDEMCRANSQGPGAASGGK 240 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 +G SK + + ++ ++ K+GD +PV+ G V + ++ S EV+ + Sbjct: 241 IGPLSKSDLL-PEMGKALETM-KEGDMSPVLDIPSGVVFMRLISLTDGKEGS-AEVRDQV 297 Query: 372 ANQMRITKASEKVKEDYKRL 391 ++ + E+ E K L Sbjct: 298 RARLENNQLEERFGEWMKEL 317 >gi|225166093|ref|ZP_03727827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae bacterium TAV2] gi|224799664|gb|EEG18159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae bacterium TAV2] Length = 351 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 101/364 (27%), Gaps = 72/364 (19%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 D L + V + + L I + + + + + I+ Sbjct: 48 DDGLDMRFANGIAAIVEDRVITVDDIRRELAPILPQIRRDSRNAKEFQD-KVQAVQEDIV 106 Query: 91 DNLVSGATLDQFIEDIGLE-ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 +L+ + + G + I+ DN F+S L G+ + Sbjct: 107 RSLIDRTLIVKDFYKDGRRHIPASYIDNAISDQMA-QKFDN--DRAKFLSYLRARGLTLR 163 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209 +Y + L + R I S Sbjct: 164 DYRKEVEEDLV---------------------YGYMRSQQRKSQSI------------VS 190 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 A + ++++ + + E + I + + Sbjct: 191 PARVEAYYKQNESKFYQEEAIHLRMIQLNRENGQAD------------------------ 226 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLAD 327 L+ A+E G+KF LA+ + G + ++ + Sbjct: 227 ---AHLIV----RANEIIDKFNNGEKFEDLAKAYTQDSRKARGGDWGWQRKVDLKPDFST 279 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 +FSL K G P++ G + I + + + + + EV+ I + A E ++ Sbjct: 280 PLFSLKKGGVTAPILQGDACF-ILYAEDYRAAGVPAIDEVRDQIERTLIAQMARESQEKW 338 Query: 388 YKRL 391 ++L Sbjct: 339 LEKL 342 Score = 37.3 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 38/128 (29%), Gaps = 9/128 (7%) Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 +A + + + G +++++ S D+ + ++V P Sbjct: 224 QADAHLIVRANEIIDKFNNGEKFEDLAKAYTQDSRKARGGDWGWQ----RKVDLKPDFST 279 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 LF + L + + ++ A ++EV +++ E Sbjct: 280 PLFSL-----KKGGVTAPILQGDACFILYAEDYRAAGVPAIDEVRDQIERTLIAQMARES 334 Query: 499 VSSKANQL 506 +L Sbjct: 335 QEKWLEKL 342 >gi|62178657|ref|YP_215074.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75505914|sp|Q57TG8|SURA_SALCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|62126290|gb|AAX63993.1| peptidyl-prolyl cis-trans isomerase, survival protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 428 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 60/405 (14%), Positives = 121/405 (29%), Gaps = 68/405 (16%) Query: 40 SSTVVSVGRQKVPFSSFI---NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 V V S S K G Q++ L +IL+ L+ Sbjct: 26 DKVAAIVNNGVVLESDVDGLMQSVKLNAGQAGQQLP--------DDATLRHQILERLIMD 77 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + Q + +G++ ++ IA K N + D SRLA +G+N Y + Sbjct: 78 QIILQMGQKMGVKITDEQLDQAIANI----AKQNNMTMDQMRSRLAYDGLNYSTYRNQIR 133 Query: 157 KMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RSVDYIVLNNRHVPAIADPS 209 K + ++V + +D + ++ +I++ P + Sbjct: 134 KEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIALPENPTSEQVN 193 Query: 210 NAVLTQW------------------FEKYKDNY--------RAPEYKRISYILFDVHEKE 243 +A + + R E I +K Sbjct: 194 DAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKG 253 Query: 244 KKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFP-----NQKEA----DEAFQS 289 + + K + + ++ N ++A +E Sbjct: 254 DIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAAD 313 Query: 290 LKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +K GK F A+E + + G ++ I D + D++ L K G + +H S Sbjct: 314 IKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHK-GQISAPVHSS 372 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 FG+ + + + + + K + K SE+ + Sbjct: 373 FGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFSEEAATWMQE 416 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|187734800|ref|YP_001876912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia muciniphila ATCC BAA-835] gi|187424852|gb|ACD04131.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia muciniphila ATCC BAA-835] Length = 384 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 68/359 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGAT 98 + +V + + + ++ + E + + L K I+++LV Sbjct: 83 NRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQ-GPEFYKQLALAKKNIIEDLVEREL 141 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L E +G + E+ R+ + + F+ L+ G+ + + + K Sbjct: 142 LRNEFEGMGGVIRDSLIDQEVNRT-ILTTFNG--DRSAFLKNLSLSGMTIRAFREMTKKQ 198 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L + P+ + Q +E Sbjct: 199 LQVQIMR---------------------------------ASKYDQEIPPTPEEIQQEYE 225 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 K+ YR +I + + + +PE++ Sbjct: 226 STKEQYRDLTKDKIKFKKIFIPMLGD-----------------DSASTPEVQL------- 261 Query: 279 NQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSF--SKEYIPDVSLADSIFSLAKK 335 A+ + +K K F ++A+ K L G + ++ A IF A+ Sbjct: 262 --NLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFG-AQP 318 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + S G+ I V + + +K+ I R +++E+ K+ +RL + Sbjct: 319 GEIIGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRKK 377 >gi|161528450|ref|YP_001582276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosopumilus maritimus SCM1] gi|160339751|gb|ABX12838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosopumilus maritimus SCM1] Length = 92 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADS 328 ++ Q EA + LK G+KF +LA+E G + + +LG F+K + D+ Sbjct: 8 SHILVSKQSEALAIMEKLKSGEKFGKLAKELSIDSGSAKKNGNLGYFTKGMMVKP-FEDA 66 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352 F L + G+ + I FGY I Sbjct: 67 AFKL-QVGEVSEPIKSEFGYHIIK 89 >gi|313496769|gb|ADR58135.1| Chaperone surA [Pseudomonas putida BIRD-1] Length = 439 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 52/409 (12%), Positives = 128/409 (31%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LAR+G++ ++ + + + Sbjct: 86 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFEDAREQVKREM 141 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V ++ S + + + + L N +P ++ + + Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSDDIQKAA 201 Query: 218 EKYKDNYRAPEY-------------------------KRISYILFDVHEKEKKIEISNDE 252 K D Y+ ++ + D + + + Sbjct: 202 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 261 Query: 253 LQAEYEKNKEKYFSPEIR-----------TVEQLVF---------PNQKEADEAFQSLKK 292 E R V ++ Q+ A+ + +K Sbjct: 262 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATQQLAERLYDRIKN 321 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G T +G+ Sbjct: 322 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 379 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + ++ ++ A +R K E+++ +++ + Sbjct: 380 HVLEVLGRRATDST--EQAREQQALGVLRNRKYDEELQTWLRQIRDEAY 426 Score = 38.0 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 103/309 (33%), Gaps = 45/309 (14%) Query: 363 SFQEVKKDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 SF++ ++ + + +R + +E+++ + ++ FLA ++S ++ +I +P Sbjct: 129 SFEDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPT 188 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLF--RVFGKDDPLSKDHTVALPDGSYMWVQ-------- 467 + A D K + Q L FG+ + AL G W + Sbjct: 189 PEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDF 248 Query: 468 --------IKESIPARDRK-------LEE--------VLTDVKKDWKTVKTAEEVSSKAN 504 + E LEE + +V +K +E S A Sbjct: 249 AKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAAT 308 Query: 505 QLVLEYS----KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560 Q + E K G++F ++ K+ + ++ + + + + V Sbjct: 309 QQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGV 368 Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 P + + V +V + E+ + + L + L + + ++ + V Sbjct: 369 VTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALGVLRNRKYDEELQTWLRQIRDEAYVE 428 Query: 618 VHDNLIQRY 626 + + Sbjct: 429 IKLPGADQA 437 >gi|261245325|emb|CBG23113.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 428 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190 + D SRLA +G+N Y + K + ++V + +D + +N Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK-RISYILFDVHEKEKKIEIS 249 + + L++ + +P++ + + + E + + + + + Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAESIVEEARNSADFGKLAITYSADQQALK 227 Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272 EL + + + Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287 Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319 ++ N ++A +E +K GK F A+E + + G ++ Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L K G + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + F +LA + G I + + Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNSADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|78067506|ref|YP_370275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] gi|122070639|sp|Q39D35|SURA_BURS3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|77968251|gb|ABB09631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] Length = 452 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 124/410 (30%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRAGLIARRLQQQNAPVPPTDQ-----LRAQVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + + + RL +G+ + L Sbjct: 95 VQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRGRLEAQGVPWSVFTSDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205 + + V G + S+ + + + + + + + A Sbjct: 151 MLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAA 210 Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241 ++A+L Q + + ++AP + + L Sbjct: 211 QKKADALLQQAKSGADFEKLAKNNSEANDAKKGGDLGFKAPSALPADVVDAASKLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF---------PNQKEADEA 286 I + + E+ ++ + + + V ++ +++ + Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLADI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 ++ G F + A + G + LG S ++ +L + G + I Sbjct: 331 RNQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQISQPIR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + + S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVLSRREAEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|16759087|ref|NP_454704.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763482|ref|NP_459097.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140637|ref|NP_803979.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412363|ref|YP_149438.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550725|ref|ZP_02344482.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989955|ref|ZP_02571055.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230361|ref|ZP_02655419.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168234847|ref|ZP_02659905.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243501|ref|ZP_02668433.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464364|ref|ZP_02698267.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820926|ref|ZP_02832926.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444526|ref|YP_002039322.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451624|ref|YP_002044060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469029|ref|ZP_03075013.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736155|ref|YP_002113109.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248833|ref|YP_002145076.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263512|ref|ZP_03163586.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361300|ref|YP_002140935.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244102|ref|YP_002214044.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386716|ref|ZP_03213328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926901|ref|ZP_03218103.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351432|ref|YP_002225233.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855605|ref|YP_002242256.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213427535|ref|ZP_03360285.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648902|ref|ZP_03378955.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224581934|ref|YP_002635732.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911150|ref|ZP_04654987.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826182|ref|ZP_06545294.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81677737|sp|Q5PDE6|SURA_SALPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|81706931|sp|Q7CR87|SURA_SALTY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|81766233|sp|Q8XEV3|SURA_SALTI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|25513082|pir||AH0513 survival protein SurA precursor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418589|gb|AAL19056.1| peptidyl-prolyl cis-trans isomerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501377|emb|CAD01248.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Typhi] gi|29136261|gb|AAO67828.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126620|gb|AAV76126.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194403189|gb|ACF63411.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409928|gb|ACF70147.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455393|gb|EDX44232.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711657|gb|ACF90878.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632865|gb|EDX51319.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197092775|emb|CAR58200.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212536|gb|ACH49933.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241767|gb|EDY24387.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291654|gb|EDY31004.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938618|gb|ACH75951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603814|gb|EDZ02359.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323566|gb|EDZ08761.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271213|emb|CAR36001.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324462|gb|EDZ12301.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331363|gb|EDZ18127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335129|gb|EDZ21893.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337413|gb|EDZ24177.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342524|gb|EDZ29288.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206707408|emb|CAR31681.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466461|gb|ACN44291.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|267991763|gb|ACY86648.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156721|emb|CBW16195.1| survival protein SurA precursor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911062|dbj|BAJ35036.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084330|emb|CBY94123.1| survival protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222338|gb|EFX47410.1| Survival protein SurA precursor Peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615913|gb|EFY12830.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620698|gb|EFY17558.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623951|gb|EFY20788.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627399|gb|EFY24190.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630706|gb|EFY27470.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638074|gb|EFY34775.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640560|gb|EFY37211.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647700|gb|EFY44185.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648050|gb|EFY44517.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656918|gb|EFY53204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657371|gb|EFY53643.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663691|gb|EFY59891.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666524|gb|EFY62702.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672317|gb|EFY68429.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676371|gb|EFY72442.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679536|gb|EFY75581.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686135|gb|EFY82119.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128410|gb|ADX15840.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194979|gb|EFZ80165.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200112|gb|EFZ85199.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201067|gb|EFZ86136.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209464|gb|EFZ94397.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212284|gb|EFZ97108.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216589|gb|EGA01315.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222472|gb|EGA06842.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225783|gb|EGA10003.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228676|gb|EGA12805.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236710|gb|EGA20786.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239789|gb|EGA23836.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242163|gb|EGA26192.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249412|gb|EGA33328.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252253|gb|EGA36104.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256656|gb|EGA40386.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261310|gb|EGA44897.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265510|gb|EGA49006.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271702|gb|EGA55120.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326621788|gb|EGE28133.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626455|gb|EGE32798.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987044|gb|AEF06027.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 428 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190 + D SRLA +G+N Y + K + ++V + +D + +N Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249 + + L++ + +P++ + + + E + + + + + Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAESIVEEARNGADFGKLAITYSADQQALK 227 Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272 EL + + + Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287 Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319 ++ N ++A +E +K GK F A+E + + G ++ Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L K G + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|121604733|ref|YP_982062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] gi|120593702|gb|ABM37141.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] Length = 263 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 +KK +++ +L+AEY+K E + ++ + EA SLKKG KF + Sbjct: 107 ASYQKKNPVTDADLKAEYDKFAAASGGKEYK-ARHILVEKESEATAIIASLKKGGKFEDI 165 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++Q K + G P +++ L K + FGY + V +I Sbjct: 166 AKKQSKDPGSGAKGGDLDWANPSSYVPEFTEALLKLNKGQMTDTPVKSQFGYHVIRVDDI 225 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + +F+EVK IA QM+ K + +E K+ + Sbjct: 226 RSAKLPAFEEVKPQIAQQMQQQKLAAFQEELRKKAK 261 >gi|158421935|ref|YP_001523227.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Azorhizobium caulinodans ORS 571] gi|158328824|dbj|BAF86309.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Azorhizobium caulinodans ORS 571] Length = 314 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 4/166 (2%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y R ++ + E K ++ D + Y++ ++ ++ ++ +A E Sbjct: 120 YLRTKALMETLMAAEAKKAVTEDAKRKTYDEFVKQTKPETEVHARHILVDSEAKAKEIAA 179 Query: 289 SLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G F +LA+E K LG F+K+ + AD+ F L K G + + F Sbjct: 180 KAKAGADFAKLAKENSKDSAEDGGDLGYFTKDQMV-PEFADAAFKLDK-GQVSDPVKTQF 237 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + V + + ++++V I + S+ V + + Sbjct: 238 GWHVIKVEDKRQKPIPTYEQVSDQIDQYLIRKAQSDLVTKLRSDAK 283 >gi|307610559|emb|CBX00147.1| hypothetical protein LPW_18921 [Legionella pneumophila 130b] Length = 253 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 97/262 (37%), Gaps = 21/262 (8%) Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 QEV+ I +Q+ A K + ++L + + D + + + + + +D Sbjct: 2 QEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQ--TPDSLDPVLDSLKLKIQHTEPFSRD 59 Query: 425 VKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 + + +Q++ F D + + + + + S + +++K+ IP+R++ L+EV Sbjct: 60 GGKQPITK---NKQVIHAAFSTDVLELGNNSEPIQIDNDSVIVLRVKKHIPSREQTLDEV 116 Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSK--EGKNFRDIGKNLGASLLTTNQINRMDNE 540 +KK + +KA ++ E K +++ N + +R ++ Sbjct: 117 RDQIKKIL----AKQYGDAKAKEIGSSLLHPVEDKQQQELIANNQFEWHSVENASRDSDK 172 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-----QEKDKFISYLT 595 D F+ + I + YVV K+ G + +++D I + Sbjct: 173 ANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLSSLDQEQRDSLIQQIE 229 Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617 D + L + Sbjct: 230 ASYGMMDYDLYVNNLLHHAKIE 251 Score = 45.0 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 15/171 (8%) Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + + + L + P+ + ++ V PS + EV+ I + Sbjct: 74 AAFSTDVLELGNNSE--PIQIDNDSVIVLRVKKHIPSREQTLDEVRDQIKKILAKQYGDA 131 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K KE L + + I+ + V+ A +D LL Sbjct: 132 KAKEIGSSLLHPVEDKQQQELIANN----QFEWHSVENASRDSDKANSLINDLAFNLLR- 186 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE-EVLTDVKKDWKT 492 V L +G Y+ V++K + L+ E + + + Sbjct: 187 -------PESRDGVILDNGDYVVVKLKRINDGKLSSLDQEQRDSLIQQIEA 230 >gi|188532873|ref|YP_001906670.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia tasmaniensis Et1/99] gi|188027915|emb|CAO95772.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia tasmaniensis Et1/99] Length = 431 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 54/383 (14%), Positives = 118/383 (30%), Gaps = 70/383 (18%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ LV L Q + GL+ ++ IA + NK S D SR Sbjct: 62 DDKTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKLSIDQLRSR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RSVD 193 LA +G+N Y + + ++ ++V + +D ++ Sbjct: 118 LAYDGMNYATYREQIRQEMATSEVRNSEVRRRVSILPQEVDSLAEQMASQNSAGTELNIS 177 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--- 250 +I+L P + EK + + + + Sbjct: 178 HILLPLSENPTQQQVDDQ------EKLARQLTSEARSGADFAKLAIANSADAQALKGGNM 231 Query: 251 -----DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLV 276 EL + + + + ++ Sbjct: 232 GWGRLQELPSLFAQALVTAKKGDIIGPIRSGVGFHILKVNDMRGDNQSISVTEVHARHIL 291 Query: 277 FP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDV 323 +++ + +K GK F A++ + + G +S + D Sbjct: 292 LKPSPIMTDDQARQKLQQVAAEIKSGKLTFSDAAKQLSQDPGSANQGGDLGWSSAEVFDP 351 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + D++ L KKG + +H SFG+ + + + + KK+ A ++ + + Sbjct: 352 AFRDALLRL-KKGQISDPVHSSFGWHLIELMDTRKVDKT--DAAKKERAYRLLFNRKFAE 408 Query: 384 VKEDYKRLEEFLALGTSMDEISR 406 + + + E A +D ++ Sbjct: 409 EAQTWMQEERAAAYVKILDPNAQ 431 >gi|83719320|ref|YP_442657.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia thailandensis E264] gi|167581594|ref|ZP_02374468.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia thailandensis TXDOH] gi|167619710|ref|ZP_02388341.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia thailandensis Bt4] gi|257138870|ref|ZP_05587132.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia thailandensis E264] gi|83653145|gb|ABC37208.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia thailandensis E264] Length = 259 Score = 88.1 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ EL+A Y+ + E + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I V +I Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQHLQKGQMTDTPVKTQFGWHIIRVDDI 221 Query: 357 KPSFTVSFQEVK 368 + F++VK Sbjct: 222 RNITPPPFEQVK 233 >gi|227357298|ref|ZP_03841655.1| chaperone SurA protein [Proteus mirabilis ATCC 29906] gi|227162561|gb|EEI47550.1| chaperone SurA protein [Proteus mirabilis ATCC 29906] Length = 445 Score = 88.1 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 60/442 (13%), Positives = 133/442 (30%), Gaps = 67/442 (15%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFINSWK 61 +RK + K + ++ + G + + + + + V V S + Sbjct: 1 MRKTHNGKLMKNWKTLVIGLMITVGAATSTTTFAAQELNRVSAIVNNGVVLESDVNRMLQ 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 Q E L ++IL+ LV + Q + + ++ V I Sbjct: 61 TV-----QMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQG 115 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180 +N + + RLA +GI +Y K + +V + +D Sbjct: 116 IAA----ENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVD 171 Query: 181 QAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + S + L++ +P +PS A + + ++ + + + Sbjct: 172 SLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEK-AQQVVNRIKNQLKNGADFGKLAA 230 Query: 240 HEKEKKIEI--------SNDELQAEYEKNKEKYFSPE----------------------- 268 + S DEL + K E Sbjct: 231 TYSADPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGAS 290 Query: 269 ------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312 ++ N ++A + ++ GK F A+E + Sbjct: 291 KTVSVTEVKARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALR 350 Query: 313 GSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G +P D + D++ L K + + + +FG+ + + + + S + K+ Sbjct: 351 GGELGWSMPDIYDPAFRDALMRLNKN-ELSQPVRSNFGWHLIELEDTR-SVDKTDAANKE 408 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + K +E+V+ + L Sbjct: 409 QAYRLLFNRKFNEEVQNWMQEL 430 Score = 66.9 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%) Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAI 205 + + K + + L++D + +D + + + A Sbjct: 60 QTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQGIAAE 119 Query: 206 ADPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 + + L + ++YR K + +E ++I I E+ + ++ + Sbjct: 120 NNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIES 179 Query: 263 KYFSPEIRTVEQLVFP-----NQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDI 310 + + ++ P + E ++A Q LK G F +LA + Sbjct: 180 QASQSIDLNLSHILIPLSENPSPAEIEKAQQVVNRIKNQLKNGADFGKLAATYSADPQAL 239 Query: 311 SLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVK 368 + G+ I + ++ + A+KG+ + G I V++I+ S TVS EVK Sbjct: 240 NGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVSVTEVK 299 Query: 369 KD-IANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRRE 408 I + E+ +++ + + S + ++ Sbjct: 300 ARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEY 341 >gi|167031450|ref|YP_001666681.1| SurA domain-containing protein [Pseudomonas putida GB-1] gi|166857938|gb|ABY96345.1| SurA domain [Pseudomonas putida GB-1] Length = 441 Score = 88.1 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 50/409 (12%), Positives = 132/409 (32%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 33 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TGALEQQVLERLIVENLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + I + N S D F + LA +G++ + + + + Sbjct: 88 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALAHDGLSFDDAREQVKREM 143 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHV-PAIADPSN 210 + V ++ S + + E R + ++ + Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTPEAANSDDIQKAA 203 Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243 + +++ + ++ + P V E Sbjct: 204 RKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEIT 263 Query: 244 KKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVF---------PNQKEADEAFQSLKK 292 + I I N + + E+ + + + V ++ ++ A+ + +K Sbjct: 264 QPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKN 323 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G T +G+ Sbjct: 324 GEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKTQYGW 381 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + ++ ++ A + +R K E+++ +++ + Sbjct: 382 HVLEVLGRRATDST--EQAREQQALSVLRNRKYDEELQTWLRQIRDEAY 428 Score = 38.8 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 27/254 (10%), Positives = 85/254 (33%), Gaps = 19/254 (7%) Query: 378 TKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 KA+ KV + Y++L + G ++ + + ++ Sbjct: 200 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPD---------- 249 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKT 495 ++ + +P+G ++ ++++E + L +EV + Sbjct: 250 ---FAKMLSSMPVGEITQPIRIPNG-FIILKLEEKRGGSENVLRDEVHVRHILIKPSEIR 305 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555 +E + + + + + K G++F ++ K+ + ++ + + + Sbjct: 306 SEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMAN 365 Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKS 612 + V P + + V +V + E+ + +S L + L + + ++ Sbjct: 366 AQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRD 425 Query: 613 QYSVTVHDNLIQRY 626 + V + + Sbjct: 426 EAYVEIKLPGADQA 439 >gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp. Marseille] gi|151282116|gb|ABR90526.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp. Marseille] Length = 469 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 47/325 (14%), Positives = 104/325 (32%), Gaps = 74/325 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + +V V + + F+ +K + + G + E+ L +++L+ ++ Sbjct: 50 DAIIVVVNNEVITRYDFLERYKMIEARLQSQGGNLPPREQ-----LQRQLLERMIVERAQ 104 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G++ D + + R + NK S F RL +G+ ++ + + Sbjct: 105 LQQAKETGIKIDDTMLDRAMGRI----AEQNKLSMPEFRKRLEEDGLVYSKFRNEIRDEM 160 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + R VD S+ + + Sbjct: 161 AIQRLRE-----------------------REVD----------NKVQVSDVEIDAY--- 184 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 A + ++H + I + + Q + + + Sbjct: 185 -----MAAHNAPAATAPQELHIAQILIRVPENATQKQ-------------------LADS 220 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++ ADE L G F +LA L+ LG S E +P + D+ +L + G Sbjct: 221 KRRADEVVAQLAAGADFAKLASAYSDGTDGLTGGELGWRSAERLPQL-FVDATANL-QDG 278 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFT 361 P++ G+ I + + Sbjct: 279 QIAPIVKSGNGFHILKLLGRRTQSV 303 >gi|331000013|ref|ZP_08323709.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] gi|329573161|gb|EGG54778.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] Length = 270 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 7/180 (3%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + Y + I+ ++++ Y+ Y P ++ +EA E Sbjct: 93 EKQAQLYGSILSRRYASEHPITEEQVRNRYDSLLSSY-DPHEIKFRHILVKTPEEAREII 151 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342 QSLK G F LA+E+ S G + + LA++I +L + GD P Sbjct: 152 QSLKVGSDFGSLAKERSLDQSTSQNGGQIPFTNIRNVLVPGLAEAILAL-QPGDLLPVPF 210 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 GY + + + S++EVK + +++ + +E + + K + +S+D Sbjct: 211 KSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELERLQTTEFLNDLQKDAKILKVSDSSVD 270 >gi|218262309|ref|ZP_03476823.1| hypothetical protein PRABACTJOHN_02497 [Parabacteroides johnsonii DSM 18315] gi|218223460|gb|EEC96110.1| hypothetical protein PRABACTJOHN_02497 [Parabacteroides johnsonii DSM 18315] Length = 532 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 19/145 (13%) Query: 262 EKYFSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSD 309 + +P + V ++ P +K+ A+E +Q K G F +LA+E Sbjct: 227 SRKQNPGLVRVAHVLIPFEKDSVKFGEAETLARAEEVYQKAKDGADFAELAKEYSSDAGS 286 Query: 310 ISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 G F + + + F+L G+ + + FGY I + K SF+ Sbjct: 287 AKRGGELPAFGVGEMVEP-FEVAAFALNTPGELSRPVKTRFGYHIIKLIEKK--GLPSFE 343 Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390 + KK + QM + + + + Sbjct: 344 DKKKGWSRQMAQGERNFEYYGAFDE 368 Score = 57.3 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 55/331 (16%), Positives = 112/331 (33%), Gaps = 69/331 (20%) Query: 194 YIVLNNRHVPAIADPSNAVL---TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 Y+ L +A+ + L + ++ D+YRA +++ + E Sbjct: 66 YVELFKNFKLKVAEAEDLELDKTKAFKDE-LDSYRA----QLTSSYLSDKDGE------E 114 Query: 251 DELQAEYEKNKE-------KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 ++A Y++ E + P RT+ + P ++A EA++ ++ G+ F + Sbjct: 115 AAVRAIYDRYGEVLELSHILFRLP-QRTLSKDTVPVYQKAIEAYERIQAGEDFATV---- 169 Query: 304 GKSLSDISLGSFSKEYI-------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 GK L + + EY+ + + +S+ G + + + G+ I + + Sbjct: 170 GKELKEADKENVGYEYVHCLLPMQTVKAFENVAYSMP-VGSVSLPVRTTMGFHIIKIHSR 228 Query: 357 K--PSFTV------SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 K P F+ K + T A +E Y++ ++ G E+++ Sbjct: 229 KQNPGLVRVAHVLIPFE--KDSVKFGEAETLAR--AEEVYQKAKD----GADFAELAKEY 280 Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAI---PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 AG +G E+ A E F + P V G Y Sbjct: 281 ---------SSDAGSAKRGGELPAFGVGEMVEPFEVAAFALNTPGELSRPVKTRFG-YHI 330 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 +++ E E+ K W Sbjct: 331 IKLIEKK--GLPSFEDKK----KGWSRQMAQ 355 >gi|322713110|gb|EFZ04681.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 428 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 113/369 (30%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN-- 189 + D SRLA +G+N Y + K + ++V + +D + Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169 Query: 190 ----RSVDYIVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224 ++ +I++ P ++A + + Sbjct: 170 ASTELNLRHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274 R E I +K + + K + + Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARH 289 Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ N ++A +E +K GK F A+E + + G ++ I Sbjct: 290 ILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L K G + +H SFG+ + + + + + K + K S Sbjct: 350 DPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|262340880|ref|YP_003283735.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272217|gb|ACY40125.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 697 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 97/283 (34%), Gaps = 36/283 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL---FSVSGSSTVVSVGRQKVPFSSFIN 58 LE IRK + + + + + + + L + F S+ + V + F + + Sbjct: 4 LEKIRKNT-----WLIFLFIGISLVFFVLDPNILLKFFSENSNVIGKVNGDNISFKEYFD 58 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 +++ L + G +S L + LV L Q +G+++ W Sbjct: 59 NFQF-LKRFRE--GESDSS-------LKNDVWKLLVHEKVLTQQAMKLGIQSTKRDFWKA 108 Query: 119 IARSPL------FHGKDNKFSHDVFVSRLARE-GINEKEYIDH----------YTKMLSR 161 I + + F + F L ++ + + K + Sbjct: 109 IEKQSIYSKIYDFQDEKGNMDIKKFQLYLKNLEKLSIPQAEEEKNIWNYEKKNILKKIVA 168 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKY 220 V M + G+ S + + R +DY+ + + P N + + +K Sbjct: 169 KKYVEMLMYGLNTSFIEAELNSRDKNYFSIIDYVFIPYSEIEKKYHPIKNYEIYDYIKKN 228 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 K Y+ + +S+++ H + +++++ +++ K Sbjct: 229 KFFYKTENLRNLSFVILRSHPSLDDEKNMDNKIRKLFQELKSS 271 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 81/249 (32%), Gaps = 28/249 (11%) Query: 272 VEQLVFP-----------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSL---SDISL 312 ++ ++K+A+ + + K +F L ++ + +L Sbjct: 340 FSHILISHKEAVRSSNQRSKKKAENIAKKIYNTVQKNPYQFDALVMKKSDDFIKNNKGNL 399 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G E ++ D IFS K FGY I + + K + I Sbjct: 400 GWMKYEEQNNLKKLD-IFSSENKKGTIAFTETKFGYHILRIEDQKD--LKPVYQFSIIIK 456 Query: 373 NQMRITKASEKVKEDYKRL--EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + K + + ++ + + + ++ +R +K ++ L V ++ G Sbjct: 457 TLVPSKKTEDLLHKNAVQFIKQNKNSNLNTLINNARIKKYETVFLETVKNYQWNIHG--- 513 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 ++++ + K+ + Y+ V + + +EE+ ++ Sbjct: 514 LNTELDKEIINWSYEKNRKEGDFKVFYTSNRDYIIVFLSKIQKKGY-PIEEIKNNLIPLL 572 Query: 491 KTVKTAEEV 499 K + + Sbjct: 573 INKKIHKNL 581 >gi|197104227|ref|YP_002129604.1| peptidyl-prolyl cis-trans isomerase family protein [Phenylobacterium zucineum HLK1] gi|196477647|gb|ACG77175.1| peptidyl-prolyl cis-trans isomerase family protein [Phenylobacterium zucineum HLK1] Length = 318 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 57/150 (38%), Gaps = 6/150 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ + ++ Y + + E Q+V + +A+ + L G F LA E+ + Sbjct: 128 AVTENNIRGLYAEQQRVAKRQEEIRARQIVLATEADAEAVKKLLAAGASFEALAMERSRD 187 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG F+ + +P+ + AK G+ G + V + + + Sbjct: 188 PETRFNGGDLGYFTTDVMPEAY--ELALKTAKPGEIVGPFEVEGGVALVKVEDRRLEQPI 245 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + + I + + + +++ + + Sbjct: 246 TLEAARPQIVRFLTYDRIRDLLEKLRGKAK 275 Score = 38.0 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 82/255 (32%), Gaps = 41/255 (16%) Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-SKEYIPDVS 324 P +++ + A ++LK+ +A+ + + D LG ++ + D Sbjct: 70 DPASDLFRRVLDEVVDQKLLAAEALKRNLDEDPVAQRRLAAARDRILGDMLIEDVVADAV 129 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 ++I L + V+ + ++R + Sbjct: 130 TENNIRGLYAEQQ--------------RVAKRQE---------------EIRARQIVLAT 160 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + D + +++ LA G S + ++ P F G D+ +P +L + Sbjct: 161 EADAEAVKKLLAAGASFEALAMERS----RDPETRFNGGDLGYFTTDVMPEAYELALKTA 216 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSS 501 + + +G V++++ + LE + + + E++ Sbjct: 217 KPGEIVGPFEV----EGGVALVKVEDRRLEQPITLEAARPQIVRFLTYDRIRDLLEKLRG 272 Query: 502 KANQLVLEYSKEGKN 516 KA L ++G Sbjct: 273 KAKIESLVKPQDGAP 287 >gi|153005189|ref|YP_001379514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] gi|152028762|gb|ABS26530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] Length = 342 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 14/169 (8%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------D 284 E++ + S+ EL+A Y+ + + PE V +++ A + Sbjct: 159 LLAAEEKARGSASDAELRAWYDSHGAELAQPERLRVRRVLAKVDPGASRSDRERARERAE 218 Query: 285 EAFQSLKKGKKFIQLA--EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 L+ G++F +A + + LG + D L + F L G +PVI Sbjct: 219 RFAGRLRAGERFEAVAVSGDGPERARGGDLGLIGRGDGKDARLESAAFELPAVGARSPVI 278 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + G+ + + +P SF+E + +++N++ + E RL Sbjct: 279 ELTDGFAVLELIERRPGRVPSFEEARGEVSNRLVPQLKRKAFDELLSRL 327 >gi|253998290|ref|YP_003050353.1| SurA domain-containing protein [Methylovorus sp. SIP3-4] gi|253984969|gb|ACT49826.1| SurA domain protein [Methylovorus sp. SIP3-4] Length = 438 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 56/413 (13%), Positives = 124/413 (30%), Gaps = 60/413 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + V + + + ++ G + L+K+IL+ L++ Sbjct: 35 DRIVAVVDQGVVTEKELNDRIEIVSAQLEKQ-GNQLPPRNV----LEKQILERLINDRLQ 89 Query: 100 DQFIEDIGLEADHGRVWGEIARS--------PLFHGKD-------NKFSHDVFVSRL--- 141 Q+ GL D ++ I R P F KF D+ L Sbjct: 90 LQYAAQTGLRVDDDQLDKTIMRIAEQNKMGVPEFKEALAAEGIVYKKFREDIRNEILLAR 149 Query: 142 -------AREGINEKEYIDHYTKMLSRTDVVGMFVGG---MRPSNLLLDQAKRFYFENRS 191 R + E E + T SR D + +R + + E Sbjct: 150 LREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPEDGSPEDLKRLREKAE 209 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 L + E K ++ LF K ++ + Sbjct: 210 DALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPA---LFLEALKPMQVGQLSG 266 Query: 252 ELQAEYEKNKEKYFSP---------EIRTVEQLVFPN---------QKEADEAFQSLKKG 293 L++ + K + ++ +++ D Q + G Sbjct: 267 ILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEAKRKIDGIKQLIDNG 326 Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + F + A+ G + + LG + ++ +L + G + + FG+ + Sbjct: 327 EDFGEAAKRYSNDGSAANGGDLGWVNPGDTV-PQFEKAMNAL-QPGQISDAVRSPFGWHL 384 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V + + ++ + + ++R KA E ++ + L + + +++ Sbjct: 385 IQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVRELRDRAYVELRLED 436 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 100/302 (33%), Gaps = 29/302 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +R I E + ++ ++ E+ + S + + ++ + Sbjct: 135 KKFREDIRNEILLARLREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPE 194 Query: 282 E------------ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLA 326 + A++A + L+ G+ F Q++ + +L LG + +P + L Sbjct: 195 DGSPEDLKRLREKAEDALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPALFLE 254 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384 + G + ++ G+ I +++ + T + + + I + + + Sbjct: 255 --ALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEA 312 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 K +++ + G E ++R D + +P E+ + + Sbjct: 313 KRKIDGIKQLIDNGEDFGEAAKRYSNDGSAANGGDLGWVNPGDT----VPQFEKAMNAL- 367 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 P V P G + +Q+ E +D E +++ + K E Sbjct: 368 ---QPGQISDAVRSPFG-WHLIQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVR 422 Query: 505 QL 506 +L Sbjct: 423 EL 424 >gi|325971259|ref|YP_004247450.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp. Buddy] gi|324026497|gb|ADY13256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp. Buddy] Length = 348 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 41/374 (10%), Positives = 101/374 (27%), Gaps = 88/374 (23%) Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108 + + + + ++L+ L++ Q G+ Sbjct: 36 TPISMAELDAEVAEYQASAKAAGQDPATIDPL-------QVLNLLINNELFRQGAARDGV 88 Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 + + A Y +++S + Sbjct: 89 KITDSMIDSAYASQKA-------------------------NLEASYNQVISDEQFAEVI 123 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRA 226 ++ ++ E VD YI L + + A ++ ++ K K + + Sbjct: 124 TNNFGS----VEAYRKMVGEQLMVDSYIRLKKADTLNTPVSITEAEISSFYRKNKTQFVS 179 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 PE ++S+I I +++D+ N+ ++ Sbjct: 180 PETVKLSHIY---------IPLTDDQTANA---------------------KNKATLEDV 209 Query: 287 FQSLKKGK-KFIQLAEEQGKSLSD----ISLGSFSKEYIP-----DVSLADSIFSLAKKG 336 +K G F + + + +G + + + D F+ + G Sbjct: 210 AAKIKAGTLTFEKAVVDYSQDPQSKSKAGDIGWLTMDNADALSGLGDAFFDVAFT-TEVG 268 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV---------KKDIANQMRITKASEKVKED 387 + V+ GY I + + + E + I N++ K E + Sbjct: 269 TTSSVVTSLTGYHILKILAYNETKILGLDEAISPNTTSTIRDYIKNELSSAKQQETYYKA 328 Query: 388 YKRLEEFLALGTSM 401 L + L ++ Sbjct: 329 INSLVDELRKSATV 342 >gi|303257438|ref|ZP_07343451.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] gi|302859795|gb|EFL82873.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] Length = 261 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 7/180 (3%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + Y + I+ ++++ Y+ Y P ++ +EA E Sbjct: 84 EKQAQLYGSILSRRYASEHPITEEQVRNRYDSLLSSY-DPHEIKFRHILVKTPEEAREII 142 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342 QSLK G F LA+E+ S G + + LA++I +L + GD P Sbjct: 143 QSLKVGSDFGSLAKERSLDQSTSQNGGQIPFTNIRNVLVPGLAEAILAL-QPGDLLPVPF 201 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 GY + + + S++EVK + +++ + +E + + K + +S+D Sbjct: 202 KSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELERLQTTEFLNDLQKDAKILKVSDSSVD 261 >gi|46199933|ref|YP_005600.1| hypothetical protein TTC1631 [Thermus thermophilus HB27] gi|46197560|gb|AAS81973.1| hypothetical conserved protein [Thermus thermophilus HB27] Length = 608 Score = 87.7 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 72/618 (11%), Positives = 165/618 (26%), Gaps = 139/618 (22%) Query: 63 ELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 EL ++ + + + E +D L+ ++ L Q + V E+ Sbjct: 51 ELDLLRLQGNDPLYAASPEGLLKTLVDTYFLEQVILTEALKQDAAR--VRVSSAEVRQEV 108 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 R + + L + G + + L + G Sbjct: 109 NRI---REQFGLKDKAAYEQFLNQVGYTDAQLRAEVKTQLQIQKRLEQIRSG-------- 157 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 A P+ + ++E +K+NYR + Sbjct: 158 --------------------------AKPTEEEVRFYYEVFKENYRTEPRVK-------- 183 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 Q+V ++ A+E K G+ F L Sbjct: 184 --------------------------------ARQIVVDDKALAEELAAKAKAGEDFAAL 211 Query: 300 AEEQGK--SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYV 349 A + K + +LG+ E P + +++F+L G P+ G Y Sbjct: 212 ARQHSKVGAEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGPGVVGPIAAG-GRYY 270 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEISRR 407 I V PS +F+EVK +A K + ++ + L + + + Sbjct: 271 IVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQVRFAEDNPYAYQN 330 Query: 408 EKIVSIDLPLVDFAG-KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + ++ + + + +Q L + + + + Sbjct: 331 PPVAKVNEKEILLSEVLQPVFSNQQTVALVQQGLGELAVQFFLPQTLENLIDRELLVEAA 390 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV------------------- 507 + + ++ + + +T + +S+ Sbjct: 391 RKSG------KPFIGSKAEIAEAYLRYETRDVTASEEEARAFYSENPALFTVPASAKVIG 444 Query: 508 ------------LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF- 553 + G + + K ++ +N I++ F Sbjct: 445 VNFKEEAQAKAFRAAALRGGDLEALAKAQEGTVTDYGTVNPNQLPAVLDRLVFKITETFP 504 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609 GP+ V SY V +++ K ++ + Q + ++I Sbjct: 505 QGPLGEVSEVIKMEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQA 564 Query: 610 LKSQYSVTVHDNLIQRYL 627 L+ + + + + L Sbjct: 565 LREEAKIENRLAEVLQAL 582 Score = 37.7 bits (86), Expect = 7.0, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 10/153 (6%) Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 G ++ +++ ++ D V+ + A + + F + + Sbjct: 463 GGDLEALAKAQEGTVTDYGTVN------PNQLPAVLDRLVFKITETFPQGPLGEVSEVIK 516 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + DGSY + I + + +V + ++ K +E KA L+ +E K Sbjct: 517 MEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSE----KAQALIQALREEAKIE 572 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 + + L A T ++ +++ + + + Sbjct: 573 NRLAEVLQALTPKTPSQDQPNSQEQPQPEEAPA 605 >gi|323344316|ref|ZP_08084542.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269] gi|323095045|gb|EFZ37620.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269] Length = 713 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 87/729 (11%), Positives = 194/729 (26%), Gaps = 141/729 (19%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR I + VL + + + + + + + V + + F Sbjct: 4 LGKIRGK-----GTILITVLGIALFAFIVEEGVRTCESRQNEQRQQIGQVLGKNIDVQEF 58 Query: 57 INSWKQELGMISQKIGFV-VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + +I + G +N E+ + + + V +++ E +GL + Sbjct: 59 QKLVDEYTEVIKMQQGQNNLNDEQLNQ--VKDMVWNTYVQTKIIEKEAEKLGLIVTDEEL 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRL---AREGINEKEYIDHY--------- 155 + ++P + + +F + L + + + Y Sbjct: 117 QNILNQGTNPMLLQTPFVNQQTGRFDANALKKFLADYRSQQTTNSQLAEQYHTIYKYWSF 176 Query: 156 -----TKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRFYFENRSVDYIVLN 198 + + +F + + + + F + + + D + + Sbjct: 177 VEKTLRQQILSQKYQSLFAHCLLSNPIEAKMAFKDENEESRIELAAFPYSSIADDKVQVT 236 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNY-----------RAPEYKRISYILFDVHEKEKKIE 247 + + A D A Q+ E Y RA K + D+ + Sbjct: 237 DADLKAKYDELKARFRQYVESRDIKYVDIEVMPSSQDRAALQKDFTGYAKDLAAATDPSD 296 Query: 248 ISN-------------------DELQAEYEKN----------------------KEKYFS 266 + ++ A + K Sbjct: 297 VVKKSTSVINYLGIPVAKTAFPADIAAHLDSMSVGQTYGPVENKQDNTLNLIKLVAKQQL 356 Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 P+ + K AD + +LK G F +A+ G++ + Sbjct: 357 PDSIQYRMIQVGGATVDAAHKTADSIYTALKGGADFEAIAKRYGQT---GEKTWITTAQY 413 Query: 321 PDVSLADS-------IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + D + + A + G +I V + K V I Sbjct: 414 QNAPSMDKDTKTYISVLNTAAVNAIENIPVVQ-GNIILQVVDRKSIIPKYTAAV---IKK 469 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + + + Y + F + + D+I + + + + +A I Sbjct: 470 NI--EFSRDTYSAAYNKFSSFASTNQTADDIVKNAQKNGYKVQEAKDLTTAIHY--IAGI 525 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWK 491 + + VF D+ + + + + + P R L +V VK + Sbjct: 526 RGTREAVKWVFDADENDVSQMFECGDNNHLLIMVLDKIHPVGYRSLNDPQVKEIVKTEVL 585 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYD 547 K AE++ +K N G N K G + +Q+ Sbjct: 586 KDKKAEQLMNKLN---------GVNSLASAKAKGGKVSPIDQVTFSAPVFVLSTGASEPA 636 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 V + P++ +F+V N + DK + + + Sbjct: 637 LSGAVAATAKGRFSAKPVKGNAGVYLFQVVNKTDRKAKFDDKAEEQKLRQKALQYASNFM 696 Query: 608 AYLKSQYSV 616 L V Sbjct: 697 NELYINAKV 705 >gi|83859697|ref|ZP_00953217.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis alexandrii HTCC2633] gi|83852056|gb|EAP89910.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis alexandrii HTCC2633] Length = 330 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 23/257 (8%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 +D + + M + D + +L V Sbjct: 68 VDDVRREAVSLGLTETPQALMPSDQVFRDTLSDLIDQR------LLALEAVARDVQDDEE 121 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 + A E + + IL + ++++ ++ YE+ E Sbjct: 122 A--------RLRLAAAEERILGNILVENAIASA---VTDEAVELVYEEQSRLAPRTEEIR 170 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLAD 327 ++ ++EADE + L +G F QLA + + L S LG F++ I A Sbjct: 171 ARHILVETREEADEVARLLAEGSDFGQLAAQVSRDLATRFSGGDLGYFTRTGIL-PGFAQ 229 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 F+ +G + +G+ + V + + S +EV+ +I + + + ++ Sbjct: 230 VAFA-TDEGAVSAPFETEYGWHVLQVMDRRLQPRESLEEVRPNIVRFLTLQGIDDLLEVL 288 Query: 388 YKRLEEFLALGTSMDEI 404 +R G + + Sbjct: 289 RERYPVTRVAGRAPSAL 305 >gi|168704077|ref|ZP_02736354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata obscuriglobus UQM 2246] Length = 309 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 41/356 (11%), Positives = 106/356 (29%), Gaps = 84/356 (23%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + +V +++ + K L + + + + R + ++L ++V Sbjct: 26 NPNLAATVNGEQITLAEVDALLKTTLPL------TPLTAAQKRQ--MRVEVLADMVDDVL 77 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L QF+ G + D + ++ F +L EG ++ Sbjct: 78 LRQFLRKNGPKVDPAEIDAQL---------------KAFGEKLKAEGKTLADFYRE---- 118 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 G ++ + Q + ++ + L +F Sbjct: 119 ------TGQTEAQVKEAWTTAMQLTGYV------------------KSNATEEQLKAYFA 154 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 KD++ E ++ +++ + SP R Sbjct: 155 ANKDHFDRVE-VKVRHVVLRAGKSA----------------------SPAERAA------ 185 Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 +++ + + GK F A++ + +G ++ K Sbjct: 186 AKEKLEAIRADIAGGKLDFADAAKKHSHCPSGPAGGDIGVIYRKGGIVDEAFAKAAFALK 245 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V+ FGY + V+ KP ++ + D+ + ++ + + K+ Sbjct: 246 PGELSGVVETDFGYHLIQVTERKPGTPTTYDKSATDVLDTYSDEFRADLIAKLRKQ 301 >gi|90424494|ref|YP_532864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] gi|90106508|gb|ABD88545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] Length = 310 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%) Query: 245 KIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFP------------NQKEADEAFQSLK 291 + ++ D ++ Y++ K + + + LVF + +A AF + Sbjct: 131 QQAVTEDAVRKAYQEVVVKPATDQIELHLRHLVFKFPDANDAAAASATEVKAKAAFARID 190 Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG+ F +A + + + ++ + AD F+L K G+ + I +FG Sbjct: 191 KGEDFAAVAADLSEDPATKARGGDFDWRTRPEMGK-EYADVAFAL-KPGEVSAPIKTAFG 248 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + I + +P V F++++ +A + + V + Sbjct: 249 WHIIKLEERRPRKPVEFEKIRDRVAAMVANAARFDLVDKARSAA 292 >gi|239815915|ref|YP_002944825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] gi|239802492|gb|ACS19559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus S110] Length = 261 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 4/141 (2%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ I K +S+ E++AEY+K E + ++ + +A + Sbjct: 95 RQAILIRALFENYRKTSPVSDAEVKAEYDKFVAANGGKEYK-ARHILVETEDQAKKIMAD 153 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSF 346 LKKG KF +A++Q K + G P ++++ L K + F Sbjct: 154 LKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFSEAMIKLKKGETTPAPVKTQF 213 Query: 347 GYVIAHVSNIKPSFTVSFQEV 367 GY I V +++ + +EV Sbjct: 214 GYHIIRVDDVRQAQLPKLEEV 234 >gi|152968631|ref|YP_001333740.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893026|ref|YP_002917760.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae NTUH-K2044] gi|330009278|ref|ZP_08306494.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3] gi|150953480|gb|ABR75510.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545342|dbj|BAH61693.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238774029|dbj|BAH66526.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae NTUH-K2044] gi|238774061|dbj|BAH66557.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae] gi|328534855|gb|EGF61397.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3] Length = 428 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA EGIN Y + K + ++V + ++ + + Sbjct: 110 TLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQND 169 Query: 192 VDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + L++ +P +P++ + ++ ++ ++ + + + Sbjct: 170 ASTELNLSHILIPLPENPTSDEVAA-AQEQANSIVEQARNGANFGKLAITYSADQQALKG 228 Query: 251 --------DELQAEYEKNKEKYFSPE-----------------------------IRTVE 273 EL + + + Sbjct: 229 GQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHAR 288 Query: 274 QLVFP---------NQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEY 319 ++ Q + ++ +K GK F Q A+ + G + LG + + Sbjct: 289 HILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPD- 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L KG + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALMRL-NKGQTSGPVHSSFGWHLIELLDSR-QVDRTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 98/306 (32%), Gaps = 27/306 (8%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I + E++A ++ ++ + + ++ P Sbjct: 124 NYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ +S EV I + + Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++ + G ++ K S D + G P L R+ Sbjct: 304 QAKLEQIAAEIKSGK--ITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRL- 360 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + P S + E + +R DR + K +EE ++ Sbjct: 361 -------NKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATW 413 Query: 503 ANQLVL 508 + Sbjct: 414 MQEQRA 419 >gi|119470578|ref|ZP_01613281.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales bacterium TW-7] gi|119446279|gb|EAW27556.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales bacterium TW-7] Length = 431 Score = 87.7 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 112/377 (29%), Gaps = 83/377 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S + + ++ + + L + ++ LVS A + Sbjct: 28 DKVVGIVNQGVILQSEVNSIVDRVKKQAQEQ-----GQQLPKDETLRVQAMERLVSQALM 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +GL+ ++ +A + S + G + + Y + K + Sbjct: 83 MQMAERMGLQISDSQLDQTLANIA--KEQGGTISD--LRRTVEASGDSFQAYREEIRKEI 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + V +V S + + Sbjct: 139 TTQQV---------------------------------TRANVDRRIYISEQEVDNLLKI 165 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++ E I +IL D+ + EIS Sbjct: 166 MASQGQSAEEYDIGHILIDIPNEATADEIS----------------------------AA 197 Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + AD+ + L G++F ++A K+L LG +P + A+++ S KK Sbjct: 198 KTRADKVIELLNDGQEFKRIAISSSSGSKALEGGQLGWMGINEMPSL-FAEAVKS-KKKD 255 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391 + G+ I V +++ V EV+ I + KA + K Sbjct: 256 AIVGPLRSGAGFHIIKVQDVRGLQVVETTEVRSRHILIEPSIILSEEKARNMLAGFAK-- 313 Query: 392 EEFLALGTSMDEISRRE 408 + A E+++ Sbjct: 314 -DLRAGNADFGELAKEY 329 >gi|320161645|ref|YP_004174870.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1] gi|319995499|dbj|BAJ64270.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1] Length = 438 Score = 87.4 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 9/126 (7%) Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD 322 E ++ ++ A E L KG+ +++LA E K S LG F K + Sbjct: 290 EEKVWARHILVETEETAKEVLDRLNKGEDWVKLAAEYSKDTSNANKGGDLGWFGKGTMVK 349 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS--NIKPSFTVSFQEVKKDIANQ-MRITK 379 D++++L K G+ + + +FGY I + ++P F + K+ ++ + K Sbjct: 350 -EFEDAVYAL-KVGEISQPVQTTFGYHIIQLLGREVRPLTDSEFNQKKQAAYDEWLTQAK 407 Query: 380 ASEKVK 385 +++ VK Sbjct: 408 SADTVK 413 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 17/129 (13%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72 + +++ + +++G+ D + + V VG +K+ F K + Q+ Sbjct: 31 LGTAIVLIAVIGLIVYGILDQSV-LKQNRAVAQVGNEKITVKEFQTEAKFWRYLQVQQYN 89 Query: 73 ----------------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + A + K++LD ++ A + Q G+ + Sbjct: 90 NLASNPLLVQFYGSYLQELETSLADPQTIGKQVLDAMIEDALVAQEAAKRGITVSEEEID 149 Query: 117 GEIARSPLF 125 E+ + F Sbjct: 150 KEMQEAFGF 158 >gi|292489392|ref|YP_003532279.1| survival protein SurA [Erwinia amylovora CFBP1430] gi|292898389|ref|YP_003537758.1| survival protein A [Erwinia amylovora ATCC 49946] gi|291198237|emb|CBJ45343.1| chaperone (peptidyl-prolyl cis-trans isomerase) (survival protein A) [Erwinia amylovora ATCC 49946] gi|291554826|emb|CBA22684.1| survival protein SurA precursor [Erwinia amylovora CFBP1430] Length = 431 Score = 87.4 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 62/383 (16%), Positives = 121/383 (31%), Gaps = 70/383 (18%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ LV L Q + GL+ ++ IA + NK S D SR Sbjct: 62 DDRTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKMSIDQLRSR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN------RSVD 193 LA +G+N Y + K ++ ++V + +D ++ Sbjct: 118 LAYDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNIS 177 Query: 194 YIVLNNRHVPAIADPSNAV----------------------------------------- 212 +I+L P + Sbjct: 178 HILLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQ 237 Query: 213 ------LTQWFEKYKDNYRAPEYKRISYILFDVHEKE---KKIEISNDELQAEYEKNKEK 263 K + P + + + V++ + I ++ + K Sbjct: 238 ELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPI 297 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + R Q V + K F + K QL+++ G + LG S E + D Sbjct: 298 MTDDQARQKLQQVASDIKSGKLTFSAAAK-----QLSQDPGSANQGGDLGWSSAE-VFDP 351 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + D++ L KKG +H SFG+ + + + + KK+ A ++ + + Sbjct: 352 AFRDALLRL-KKGQIGDPVHSSFGWHLIELMDTRKVDKT--DAAKKERAYRLLFNRKFAE 408 Query: 384 VKEDYKRLEEFLALGTSMDEISR 406 + + + E A +D ++ Sbjct: 409 EAQTWMQEERAAAYVKILDANAQ 431 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 40/308 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ++ + G++ S+ LDQA + + L +R Sbjct: 73 RLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKMSIDQLRSRL-------------A 119 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + +YR K ++ E +++ I E+ + + + + + + Sbjct: 120 YDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNISHI 179 Query: 276 VFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + P + A + K G F +LA + G+ I ++ Sbjct: 180 LLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQEL 239 Query: 324 S--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQM 375 A ++ + AKKGD + G+ I V++++ ++S EV + M Sbjct: 240 PSLFAQALVT-AKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIM 298 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +A +K+++ ++ + + +++ S D + G P Sbjct: 299 TDDQARQKLQQVASDIK---SGKLTFSAAAKQL---SQDPGSANQGGDLGWSSAEVFDPA 352 Query: 436 KEQLLFRV 443 L R+ Sbjct: 353 FRDALLRL 360 >gi|312173557|emb|CBX81811.1| survival protein SurA precursor [Erwinia amylovora ATCC BAA-2158] Length = 431 Score = 87.4 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 122/378 (32%), Gaps = 60/378 (15%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ LV L Q + GL+ ++ IA + NK S D SR Sbjct: 62 DDRTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKMSIDQLRSR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAK-RFYFENRSVDYIVLN 198 LA +G+N Y + K ++ ++V + +D + +N + + ++ Sbjct: 118 LAYDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNIS 177 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250 + +P +P+ + E + + + + Sbjct: 178 HILLPLPENPTQQQVDDQ-ENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRI 236 Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFP--- 278 EL + + + + ++ Sbjct: 237 QELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSP 296 Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADS 328 +++ + +K GK F A++ + + G +S + D + D+ Sbjct: 297 IMTDDQARQKLQQVASEIKSGKLTFSAAAKQLSQDPGSANQGGDLGWSSAEVFDPAFRDA 356 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + L KKG +H SFG+ + + + + KK+ A ++ + + + + Sbjct: 357 LLRL-KKGQIGDPVHSSFGWHLIELMDTRKVDKT--DAAKKERAYRLLFNRKFAEEAQTW 413 Query: 389 KRLEEFLALGTSMDEISR 406 + E A +D ++ Sbjct: 414 MQEERAAAYVKILDANAQ 431 Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 40/308 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ++ + G++ S+ LDQA + + L +R Sbjct: 73 RLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKMSIDQLRSRL-------------A 119 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + +YR K ++ E +++ I E+ + + + + + + Sbjct: 120 YDGMNYASYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNISHI 179 Query: 276 VFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323 + P + A + K G F +LA + G+ I ++ Sbjct: 180 LLPLPENPTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQEL 239 Query: 324 S--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQM 375 A ++ + AKKGD + G+ I V++++ ++S EV + M Sbjct: 240 PSLFAQALVT-AKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIM 298 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +A +K+++ ++ + + +++ S D + G P Sbjct: 299 TDDQARQKLQQVASEIK---SGKLTFSAAAKQL---SQDPGSANQGGDLGWSSAEVFDPA 352 Query: 436 KEQLLFRV 443 L R+ Sbjct: 353 FRDALLRL 360 >gi|167562430|ref|ZP_02355346.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia oklahomensis EO147] gi|167569612|ref|ZP_02362486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia oklahomensis C6786] Length = 259 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ EL+A Y+ + E + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPSDAELKARYDDLVKSAAGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V +I Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDI 221 Query: 357 KPSFTVSFQEVK 368 + F++VK Sbjct: 222 RSITPPPFEQVK 233 >gi|313200363|ref|YP_004039021.1| sura domain-containing protein [Methylovorus sp. MP688] gi|312439679|gb|ADQ83785.1| SurA domain protein [Methylovorus sp. MP688] Length = 438 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 56/413 (13%), Positives = 124/413 (30%), Gaps = 60/413 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + V + + + ++ G + L+K+IL+ L++ Sbjct: 35 DRIVAVVDQGVVTEKELNDRIEIVSAQLEKQ-GNQLPPRNV----LEKQILERLINDRLQ 89 Query: 100 DQFIEDIGLEADHGRVWGEIARS--------PLFHGKD-------NKFSHDVFVSRL--- 141 Q+ GL D ++ I R P F KF D+ L Sbjct: 90 LQYAAQTGLRVDDDQLDKTIMRIAEQNKMGVPEFKEALAAEGIVYKKFREDIRNEILLAR 149 Query: 142 -------AREGINEKEYIDHYTKMLSRTDVVGMFVGG---MRPSNLLLDQAKRFYFENRS 191 R + E E + T SR D + +R + + E Sbjct: 150 LREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPEDGSPEDLKRLREKAE 209 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 L + E K ++ LF K ++ + Sbjct: 210 DALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPA---LFLEALKPMQVGQLSG 266 Query: 252 ELQAEYEKNKEKYFSP---------EIRTVEQLVFPN---------QKEADEAFQSLKKG 293 L++ + K + ++ +++ D Q + G Sbjct: 267 ILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEAKRKIDGIKQLIDNG 326 Query: 294 KKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + F + A+ G + + LG + ++ +L + G + + FG+ + Sbjct: 327 EDFGEAAKRYSNDGSAANGGDLGWVNPGDTV-PQFEKAMNAL-QPGQISDAVRSPFGWHL 384 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 V + + ++ + + ++R KA E ++ + L + + +++ Sbjct: 385 IQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVRELRDRAYVELRLED 436 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 100/302 (33%), Gaps = 29/302 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +R I E + ++ ++ E+ + S + + ++ + Sbjct: 135 KKFREDIRNEILLARLREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEISHILIRAPE 194 Query: 282 E------------ADEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLA 326 + A++A + L+ G+ F Q++ + +L LG + +P + L Sbjct: 195 DGSPEDLKRLREKAEDALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVPALFLE 254 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384 + G + ++ G+ I +++ + T + + + I + + + Sbjct: 255 --ALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEVLSETEA 312 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 K +++ + G E ++R D + +P E+ + + Sbjct: 313 KRKIDGIKQLIDNGEDFGEAAKRYSNDGSAANGGDLGWVNPGDT----VPQFEKAMNAL- 367 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 P V P G + +Q+ E +D E +++ + K E Sbjct: 368 ---QPGQISDAVRSPFG-WHLIQVLERR-NQDMTREAERMKARQEIRQRKADEAYQDWVR 422 Query: 505 QL 506 +L Sbjct: 423 EL 424 >gi|288940552|ref|YP_003442792.1| SurA domain-containing protein [Allochromatium vinosum DSM 180] gi|288895924|gb|ADC61760.1| SurA domain protein [Allochromatium vinosum DSM 180] Length = 446 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 56/400 (14%), Positives = 127/400 (31%), Gaps = 62/400 (15%) Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 S + ++Q+ G + L K++LD L+ Q +++GL+ D Sbjct: 56 QSELEREIALVIPQLNQR-GTAIPPPE----QLRKQVLDRLILKHLQQQRAKELGLKVDE 110 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGG 171 + + N S D + L GI +++ + + + + V Sbjct: 111 ATLEEALQGIAG----RNGLSLDELKATLEAGGIRFEDFREDTRSQILSSRLQNQEVVRK 166 Query: 172 MRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--------- 221 ++ S +D+ R + + L + + +P+ + + +K K Sbjct: 167 IQVSEPEVDRFLAREASRLIEREQVRLQHILIALPENPTPEQVKRAEDKAKGLVERLRSG 226 Query: 222 DNYRAPEYKR-------------------ISYILFDVHEKEKKIEISN----DELQAEYE 258 ++ A + + ++ D+ + E+S Sbjct: 227 ADFAAVAVRESDGRNALEGGDLGWFEMGAVPSLVSDLAYTLAEGEVSEPLRSPSGFHIIR 286 Query: 259 KNKEKYFSPE---IRTVEQLVFPNQK---EADE------AFQSLKKGKKFIQLAE----E 302 + K +PE ++ + +AD + + G+ F LA + Sbjct: 287 MREIKAAAPEDVTQTRARHILIRTNEIVSDADARQRLLQLRERIIGGEDFAGLARAHSDD 346 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 G +L LG + + +LA G + FG+ I V + Sbjct: 347 TGSALKGGELGWVDPGKTV-PEFEEQMNALA-VGATSEPFKSPFGWHILQVEERRQQSAN 404 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++ ++ KA E +E ++L + + +D Sbjct: 405 E-DILRLKAREALQRRKAEEATEEWLRQLRDEAYVEIRLD 443 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 103/307 (33%), Gaps = 31/307 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 +++R +I E +KI++S E+ + + E ++ ++ Sbjct: 143 EDFREDTRSQILSSRLQNQEVVRKIQVSEPEVDRFLAREASRLIEREQVRLQHILIALPE 202 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326 + +A + L+ G F +A + +L LG F +P + ++ Sbjct: 203 NPTPEQVKRAEDKAKGLVERLRSGADFAAVAVRESDGRNALEGGDLGWFEMGAVPSL-VS 261 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKASEK 383 D ++LA+ G+ + + G+ I + IK + + + I ++ A Sbjct: 262 DLAYTLAE-GEVSEPLRSPSGFHIIRMREIKAAAPEDVTQTRARHILIRTNEIVSDA--D 318 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 ++ +L E + G ++R + G GK V + L V Sbjct: 319 ARQRLLQLRERIIGGEDFAGLARAHSDDTGSALKGGELGWVDPGKTVPEFEEQMNAL-AV 377 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 +P + +Q++E + + + ++ + K E Sbjct: 378 GATSEPFKSPF-------GWHILQVEERRQQSANE-DILRLKAREALQRRKAEEATEEWL 429 Query: 504 NQLVLEY 510 QL E Sbjct: 430 RQLRDEA 436 >gi|169825994|ref|YP_001696152.1| foldase protein prsA 1 [Lysinibacillus sphaericus C3-41] gi|168990482|gb|ACA38022.1| Foldase protein prsA 1 precursor [Lysinibacillus sphaericus C3-41] Length = 319 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 35/276 (12%) Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY------------RAPEYKRISY-ILFDVHEK 242 ++ + + + ++ + ++ + E + S + + Sbjct: 57 MVTEKVLSDKYEVTDKEFKEAYDVTASQFGDSFSQALAESGLTEEGFKDSLRVQLLQEKA 116 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 K I ++++ YE+ K + ++ ++K A E +K G KF +A+E Sbjct: 117 LKDQAIKEEDVKKYYEQMKTELNG------RHILVADEKTAKEVIAKIKGGAKFADVAKE 170 Query: 303 QGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 LG FS + D D+ ++L + + + SFGY + +++ + Sbjct: 171 YSTDTGSAEKGGELGWFSVGSMVD-EFNDAAYAL-ELNTLSEPVQTSFGYHVIEITDKRD 228 Query: 359 SFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 V SF++ +++I M ED L++ +A + +K + L Sbjct: 229 VKDVGSFKDEEENIRTAMLGKLKQT--GEDQVILKDIIAKMAKDANVRTPDKNLKQSLEF 286 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 ++ E+ + +D D Sbjct: 287 FTTTSEEQAKAT-------EEAAKKAESEDKAEDTD 315 >gi|146309025|ref|YP_001189490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] gi|145577226|gb|ABP86758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] Length = 430 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 50/413 (12%), Positives = 132/413 (31%), Gaps = 64/413 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S ++ I ++ G + E L +++L+ L+ Sbjct: 31 DRVVAIVDNDVVMQSQLDARLREVQQTIDKR-GGALPPEHV----LSQQVLERLIIENIQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + + + N S + F LAR+G++ + D + + Sbjct: 86 LQIGERSGIRITDEELNQAMGTI----AQRNGMSLEQFRQALARDGLSYADARDQVRREM 141 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ ++ + + E R + ++ ++ + ++ Sbjct: 142 IISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEIQAAD 201 Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243 + +++ + ++ + P + E Sbjct: 202 RQARELYQQLQQGADFAQLAISRSASETALEGGEMGWRKAGQLPPPFDSMISQLNPGEVT 261 Query: 244 KKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + + + EK + V ++ ++ + +Q + G Sbjct: 262 EPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSPEETRRLVERLYQRIVAG 321 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L + + S G+ + FG+ Sbjct: 322 EDFAELAKSFSEDPGSALNGGDLNWIDPNALV-PEFRQ-VMSETASGELSKPFQTQFGWH 379 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + V + + F+E + AN +R K E+++ +++ + + T + Sbjct: 380 VLQVMGRRATDSSAQFRE--QQAANLLRNRKYDEELQAWLRQIRDEAYVETKL 430 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 21/235 (8%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------- 278 + + ++I++++ E+Q + K E + ++ P Sbjct: 138 RREMIISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEI 197 Query: 279 --NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLA 333 ++A E +Q L++G F QLA + +L +G +P DS+ S Sbjct: 198 QAADRQARELYQQLQQGADFAQLAISRSASETALEGGEMGWRKAGQLPPP--FDSMISQL 255 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392 G+ T + G++I + + T EV I + ++ E+ + +RL Sbjct: 256 NPGEVTEPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSPEETRRLVERLY 315 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 + + G E+++ S D G A +P Q++ + Sbjct: 316 QRIVAGEDFAELAKSF---SEDPGSALNGGDLNWIDPNALVPEFRQVMSETASGE 367 >gi|319778501|ref|YP_004129414.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9] gi|317108525|gb|ADU91271.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9] Length = 491 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 59/458 (12%), Positives = 132/458 (28%), Gaps = 124/458 (27%) Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93 L + + V + + F + G + D+ +L +L Sbjct: 36 LSKNATEQILAVVNDEVITMGDFASRLNTLR-----ISGQHFS---------DEAVLQSL 81 Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 + +D F ++ GL RV I N + + + ++ IN EY+ Sbjct: 82 IDEKLMDTFAKERGLTVSDQRVAQAIQNIAA----QNGLTPEQMKAASSQYNINWDEYLK 137 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 + + + D+ + + + + Sbjct: 138 NIRQQILIEDLKAAI---------------------------------IRDRINITPHDI 164 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 + + ++ +++ E + E + E+YF P+ +++ Sbjct: 165 EAYLAQNPTGL--------------PKGYKEPVKV---EPRFEKRQVVEQYFVPKAISLQ 207 Query: 274 QLVFPNQK------------EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 + + +A+EA ++KG+KF +A + + G+ Sbjct: 208 HIYIRVPEGSSPETVAAAKAKANEALSKIRKGQKFADVARQYSDGPEAANGGNLGIRMNE 267 Query: 322 D-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK----------------PSFTVSF 364 D +L + + G + V + G+ I V + P Sbjct: 268 DWPALFMNATKNVRDGRTSGVFQAANGFHILRVVERRGLVDQRVKTVNVRLPDPPQPQLS 327 Query: 365 QEVKKDIAN-------------------QMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 ++ K I + KA EK+ + +L+ G +++ Sbjct: 328 EKEKAAIKEGPVEVEESHVRHILVAINPVVDEQKAYEKIVDIANQLK----SGAEFSDLA 383 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + PL V+G A P +Q F + Sbjct: 384 EKYSD-DTSAPLGGDLSWIVRGS---ADPAFDQAAFSL 417 >gi|167836282|ref|ZP_02463165.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia thailandensis MSMB43] Length = 259 Score = 87.4 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ EL+A Y++ + E + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPSDAELKARYDELVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V ++ Sbjct: 162 AKQFSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVK 368 + F++VK Sbjct: 222 RSITPPPFEQVK 233 >gi|126664692|ref|ZP_01735676.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] gi|126631018|gb|EBA01632.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] Length = 481 Score = 87.4 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 49/408 (12%), Positives = 122/408 (29%), Gaps = 85/408 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + + + + + L +++LD L++ + Sbjct: 63 DQVVAIVDDDVILATELDARINSIVTRLQSQETTLPPRSL-----LQERVLDQLITESVQ 117 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +G+ + + N S + F +LA EG++ ++ + L Sbjct: 118 LQMAGKMGMRISDNELNETMVSIAG----RNGMSLEQFEQQLANEGVSYRDAREQIRNEL 173 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + V + R V + ++ + + + Sbjct: 174 LTSRV-----------------------QQRQV----------GSRIRVTDREVENYQQA 200 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + R++YI + + + Sbjct: 201 QQAGGGNTAEYRLAYIFIETEDPSSDASVQ----------------------------TA 232 Query: 280 QKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + +A+ Q + +G+ F +A + +L +G + +P SL + G Sbjct: 233 RSKAEALRQQIVEGRDFRAVAVAESDASNALEGGDMGWRVESQLP--SLVAPVVPDLVVG 290 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---VKKDIAN---QMRITKASEKVKEDYKR 390 + V+ S G+ + V + + V+ + + +A +KV++ +++ Sbjct: 291 QPSEVLQNSSGFHLVMVMEQRGGEQQKLVQQNRVRHILVQPSDAITEAEAEDKVRDLFEK 350 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 L+ G E+++ E ++ G G+ V Q Sbjct: 351 LQN----GADFAELAKAESDDTVSGSDGGNLGWVNPGQMVPEFEQAMQ 394 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 50/142 (35%), Gaps = 16/142 (11%) Query: 268 EIRTVEQLVFP-----NQKEADE----AFQSLKKGKKFIQLAEEQGKSL----SDISLGS 314 + V ++ + EA++ F+ L+ G F +LA+ + +LG Sbjct: 320 QQNRVRHILVQPSDAITEAEAEDKVRDLFEKLQNGADFAELAKAESDDTVSGSDGGNLGW 379 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 + + ++ + A G + FG+ + V + +S + + + Sbjct: 380 VNPGQMV-PEFEQAMQN-ATVGQIEGPVRSQFGWHLLQVQERR-QKDMSDEFRESETRQT 436 Query: 375 MRITKASEKVKEDYKRLEEFLA 396 + K +++ + + + Sbjct: 437 LYQRKFENELQNWLREIRDEAF 458 >gi|238758995|ref|ZP_04620166.1| Chaperone surA [Yersinia aldovae ATCC 35236] gi|238702806|gb|EEP95352.1| Chaperone surA [Yersinia aldovae ATCC 35236] Length = 434 Score = 87.4 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 58/404 (14%), Positives = 124/404 (30%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQSGQQVP----DDATLRHQILERLIMDNIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITISDEALDKAIADIAA----QNRMTAAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQVGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E + + + EL + + + + + Sbjct: 196 EDLAKRLVTEIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L+K G+ + +H SF Sbjct: 316 SGKSSFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDAVMKLSK-GEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + + + + + K + K +E+ + + Sbjct: 374 GWHLIQLVDTR-QVDKTDAAQKDKAYRMLFSRKFAEEAQTWMQE 416 >gi|153005190|ref|YP_001379515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] gi|152028763|gb|ABS26531.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp. Fw109-5] Length = 320 Score = 87.4 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 22/172 (12%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK----------EADEAFQSLK----- 291 + ++DE + Y+++ +++ PE V ++F +A A LK Sbjct: 112 KPADDEARKYYDEHLDEFVKPERARVSAVIFAAPAGSPDRAAKAGQAKNALARLKVEGPK 171 Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 F LA E + LG +KE + LA++ F+L + G + V+ Sbjct: 172 NPLAFSNLARELSDDPVTKAAGGDLGYRTKEELSAQHSPELANAAFALREVGQESGVVET 231 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 G+ I + + F EVK IA ++ +++ K L E + Sbjct: 232 PRGFAILKLGARQAPIDRPFDEVKAQIAARIGRESRTKEFDSYVKGLREKAS 283 Score = 39.6 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 94/295 (31%), Gaps = 35/295 (11%) Query: 345 SFGYVIAHVSNIK---PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + G ++A I +F E I + + ++ E+ R E Sbjct: 22 NGGPIVAKGDGISVTADAFKKKLDEQSPFIRARYSALERKKEFLENLIRFE--------- 72 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 ++R + +D KD + +E ++L+ + F + D Sbjct: 73 -LLAREAQAKGLD--------KDPEVQETLKKIMVQKLVRQAFDSEAGKPADDEAR---- 119 Query: 462 SYMWVQIKE-SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520 Y + E P R R + A + + +L +E K F ++ Sbjct: 120 KYYDEHLDEFVKPERARVSAVIFAAPAGSPDRAAKAGQAKNALARLKVEGPKNPLAFSNL 179 Query: 521 GKNLGASLLTTN-----QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 + L +T + + + + F+ + +E + + K Sbjct: 180 ARELSDDPVTKAAGGDLGYRTKEELSAQHSPELANAAFALREVGQESGVVETPRGFAILK 239 Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626 + + + D+ + + + ++ DS + L+ + S+ + D +++ Sbjct: 240 LGARQAPIDRPFDEVKAQIAARIGRESRTKEFDSYVKGLREKASIEIFDAELEKI 294 >gi|251772461|gb|EES53028.1| protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 235 Score = 87.4 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 14/205 (6%) Query: 1 MLEIIRKAS----RTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54 MLE IR+ + + I L + + W + SG V V + Sbjct: 1 MLEWIRREAVERPKVIGVLILLTGGIFVLSMGWW--GFSQSGSSGGDVVAKVDGVPIKAK 58 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + + + + + ++ + + +L N++ + +G+ Sbjct: 59 DYSRDYLIMKDNYKRLLRGDLGAKILKDLNFPGLVLRNMIYRQLWIDEGKSLGIAVSDKT 118 Query: 115 VWGEIARSPLFHGKDNK-FSHDVFVSRLAREGINEKEYIDHYTKMLS--RTDVV---GMF 168 V EIA+ P F + FS D +V+ L + + + + R + Sbjct: 119 VVDEIAKIPFFQVGNPPVFSKDAYVTFLKETHQSAQSFERSVRLDVLVQRAQLFVRASQT 178 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD 193 +G + + QA E + Sbjct: 179 IGALPSAPSSGQQASDLASERSRIQ 203 >gi|33602778|ref|NP_890338.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella bronchiseptica RB50] gi|81713941|sp|Q7WCX5|PLP1_BORBR RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Rotamase; Flags: Precursor gi|33577220|emb|CAE35777.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella bronchiseptica RB50] Length = 258 Score = 87.4 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 4/158 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FI 297 + + +K +++ +++AEYEK K++ V ++ ++K A++ +K K F Sbjct: 99 MADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKSKFD 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ K G ++ A+++ L K + FG+ + V Sbjct: 159 DLAKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVD 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +P + +V+ + +R + K+ ++ + Sbjct: 219 DTRPVEFPAMDQVRPQLEEMLRQQTLANYQKQLREQAK 256 >gi|255530403|ref|YP_003090775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus DSM 2366] gi|255343387|gb|ACU02713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus DSM 2366] Length = 455 Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 89/306 (29%), Gaps = 72/306 (23%) Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 L ++Q+ +NS + IL +++ L Q E + D G+V E+ + Sbjct: 39 LSDLNQQYAQFLNSGNTDDPKVKCYILQQMLAQKLLKQQAEIDSVMVDDGQVDEEVEKRM 98 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 + + + L R + +Y D + + Sbjct: 99 RYQIQRAG-GQERLEQFLNR---SVLQYKDEIRPDIKEQLISNKMQ-------------- 140 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHE 241 + + + ++F+ Y+ + P I I+ Sbjct: 141 ----------------AKITQDVSITPLEVKKYFDGYQKDSLPDIPTEFEIGEIVMYP-- 182 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 +++ E Q Y+K D +K G+ F LA+ Sbjct: 183 -----KLTKAEKQKYYDK-----------------------IDALRLRVKSGEDFAFLAK 214 Query: 302 ----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + LG F + + F L K G+ +PV G+ I V + Sbjct: 215 SYSEDPGSAADGGDLGFFDRTRMVK-EFTAWAFKL-KPGEMSPVFETEHGFHILQVVERR 272 Query: 358 PSFTVS 363 + Sbjct: 273 GEQVQA 278 >gi|294634977|ref|ZP_06713494.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC 23685] gi|291091576|gb|EFE24137.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC 23685] Length = 434 Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 119/402 (29%), Gaps = 62/402 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S K + + +Q+ G + + L +IL+ L+ Sbjct: 26 DKVVAIVDNGVVLESDVDGMMKS-VKLNAQQAGQQLP----DNATLRHQILERLIMDNIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +GLE + I N + SRLA +G++ K Y K + Sbjct: 81 LQMAKRMGLEVSDSELDNAINGIAA----QNHLTPQQLRSRLAADGLDYKAYRAQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSN------- 210 ++V + +D + S + V L++ +P +P+ Sbjct: 137 LISEVRNNEVRRRVTILPQEVDALAKQISSQNSGETAVNLSHILIPLPENPTQQQVSEAQ 196 Query: 211 ----------------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 A L + + E E ++ Sbjct: 197 QQAESLVQQLRHGADFAKLAATYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIV 256 Query: 255 ------------AEYEKNKEKYFSP-EIRTVEQLVF---------PNQKEADEAFQSLKK 292 + ++ ++ + + + +K Sbjct: 257 GPIRSGVGFHILRVNDLRGDQANVAVTEVHARHILLRTSPVMSDAQARAKLEALAAQIKS 316 Query: 293 GK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F Q A++ G ++ + D + D++ L KG+ + +H +FG+ Sbjct: 317 GQITFEQAAKQYSDDPGSAQKGGDLGWAVPSMYDPAFRDALMKL-NKGEISQPVHSNFGW 375 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + + + + K+ + K +E+ + + Sbjct: 376 HLIQLLGTR-QVDRTDEAQKERAYRILFNRKFAEEAQTWLQE 416 >gi|282858536|ref|ZP_06267707.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282588661|gb|EFB93795.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 715 Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 79/612 (12%), Positives = 188/612 (30%), Gaps = 89/612 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L IR S+ + I + + + FL + + S SG S V + +K+ F Sbjct: 4 LGKIR--SKGALLMIVIGLGLLGFL---VEEGARSCSGLKAEQHSQVGEILGEKISNQDF 58 Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 ++ I ++ E + ++ LVS L+ + +GL + Sbjct: 59 QKLIEEYQSAIKLTMQRDNLSEEELNQ--VKDQVWQQLVSNRVLEADAKKVGLTVTEQEM 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 +A++P + + +F + + K + + Sbjct: 117 QNVLNDGTNPALAQTPFVNQQTGRFDVNALKQFIDSYN------KAKAAKSPQLEQMQSI 170 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + + L Q ++ ++ N + + Sbjct: 171 YNYWLFVEKNLRSQLLAQKYQGLLASCVLSNKAEAKL----------AFKDNN------- 213 Query: 228 EYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADE 285 E +I + ++I++++L+A+YE+ K + E R V+ + + A + Sbjct: 214 EEAQIQLAALPYSSVKDADVKITDEDLKAKYEELKGAFRQTVETRDVKYVDVQIKASAAD 273 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLA 333 + L +A + G + I + S + + PD++ ++ Sbjct: 274 RNAIVKDMNNIQKQLASATDVASVASKSGSMIPYLGIPVSSKAYQQYPDIASKIDSLAVG 333 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI--ANQMRITKASEKVKEDYKRL 391 G V + I V + +++ I + ++ K + Sbjct: 334 TTGVIENVQDNTLN--IIRVLSK--------EQLPDSIQFRQIQVVANTPDEAKAKADSI 383 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 ++ LA G I++R + L + + +L ++ Sbjct: 384 QKALAGGADFVAIAKRYGQTADKTWLTGQQYEGSASMGQDNRTFLMAILK------GEVN 437 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 VAL G+ + +Q+ + + + + V+ K + A A E+ Sbjct: 438 ATQNVALTQGN-VILQVLDKKAMKTKTVAAVIKKAIDFSKDTRAA------AYNKFSEFV 490 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEMV-KCFPI 565 + DI KN G + + + + D + +F + + + Sbjct: 491 AKNTTLADIQKNAGKYGYSVKDLKGITTAEHYVAGIRGTRDVLKWIFDAKQGDISPLYEV 550 Query: 566 ENGLSYVVFKVT 577 + +V + Sbjct: 551 GDNDHMMVLALN 562 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 29/363 (7%) Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ + +AD ++L G F+ +A+ G++ L Sbjct: 353 SKEQLPDSIQFRQIQVVANTPDEAKAKADSIQKALAGGADFVAIAKRYGQTADKTWLTGQ 412 Query: 316 SKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIA 372 E + + F +A KG+ + + G VI V + K T + V K Sbjct: 413 QYEGSASMGQDNRTFLMAILKGEVNATQNVALTQGNVILQVLDKKAMKTKTVAAVIKKAI 472 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + + T+A+ Y + EF+A T++ +I + + + G VA Sbjct: 473 DFSKDTRAA-----AYNKFSEFVAKNTTLADIQKNAGKYGYSVKDLK--GITTAEHYVAG 525 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 I +L +F + M + + R ++ +VK+ K Sbjct: 526 IRGTRDVLKWIFDAKQGDISPLYEVGDNDHMMVLALNGIHQQGYRPWDD--AEVKEMLKR 583 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYDG 548 + KA L+ + +G N + GA + T NQI Sbjct: 584 EVMKD---KKAEMLMAKL--KGVNSIAAAQAKGAKVSTVNQITFASPAFIQAVGSVEPAL 638 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 V + P++ VF V + + ++ + L Q + + V Sbjct: 639 SGAVAATAQGQFSKAPVKGNAGVYVFHVVKKAMRAGSKFNE--TQLEQQSAQQAMQLVGN 696 Query: 609 YLK 611 Y++ Sbjct: 697 YMQ 699 >gi|221066302|ref|ZP_03542407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni KF-1] gi|220711325|gb|EED66693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni KF-1] Length = 263 Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 4/133 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +KK +++ E +AEY+K E E + ++ ++ A +K GKKF + Sbjct: 107 EDFQKKNPVTDAEAKAEYDKFVEANGGKEYK-ASHILVESEDRAKAIIAEVKAGKKFEDI 165 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+++ K + G P+ +++ L K + FG+ I + + Sbjct: 166 AKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKKGEMTDAPVKSQFGWHIIRMDDE 225 Query: 357 KPSFTVSFQEVKK 369 + + F++VK Sbjct: 226 RQAEMPKFEDVKP 238 >gi|55980321|ref|YP_143618.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8] gi|55771734|dbj|BAD70175.1| peptidyl-prolyl cis-trans isomerse, PpiC family [Thermus thermophilus HB8] Length = 608 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 72/618 (11%), Positives = 165/618 (26%), Gaps = 139/618 (22%) Query: 63 ELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 EL ++ + + + E +D L+ ++ L Q + V E+ Sbjct: 51 ELDLLRLQGNDPLYAASPEGLLKTLVDTYFLEQVILTEALKQDAAR--VRVSSAEVRQEV 108 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 R + + L + G + + L + G Sbjct: 109 NRI---REQFGLKDKAAYEQFLNQVGYTDAQLRAEVKTQLQIQKRLEQIRSG-------- 157 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 A P+ + ++E +K+NYR + Sbjct: 158 --------------------------AKPTEEEVRFYYEVFKENYRTEPRVK-------- 183 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 Q+V ++ A+E K G+ F L Sbjct: 184 --------------------------------ARQIVVDDKALAEELAAKAKAGEDFAAL 211 Query: 300 AEEQGK--SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYV 349 A + K + +LG+ E P + +++F+L G P+ G Y Sbjct: 212 ARQHSKVGAEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGPGVVGPIAAG-GRYY 270 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF--LALGTSMDEISRR 407 I V PS +F+EVK +A K + ++ + L + + + Sbjct: 271 IVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQVRFAEDNPYAYQN 330 Query: 408 EKIVSIDLPLVDFAG-KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + ++ + + + +Q L + + + + Sbjct: 331 PPVAKVNEKEILLSEVLQPVFSNQQTVALVQQGLGELAVQFFLPQTLENLIDRELLVEAA 390 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV------------------- 507 + + ++ + + +T + +S+ Sbjct: 391 RKSG------KPFIGSKAEIAEAYLRYETRDVTASEEEARAFYSENPALFTVPASAKVIG 444 Query: 508 ------------LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF- 553 + G + + K ++ +N I++ F Sbjct: 445 VNFKEEAQAKAFRAAALRGGDLEALAKAQEGTVTDYGTVNPNQLPAVLDRLVFKITETFP 504 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609 GP+ V SY V +++ K ++ + Q + ++I Sbjct: 505 QGPLGEVSEVIKMEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQA 564 Query: 610 LKSQYSVTVHDNLIQRYL 627 L+ + + + + L Sbjct: 565 LREEAKIENRLAEVLQAL 582 Score = 37.3 bits (85), Expect = 8.3, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 10/153 (6%) Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 G ++ +++ ++ D V+ + A + + F + + Sbjct: 463 GGDLEALAKAQEGTVTDYGTVN------PNQLPAVLDRLVFKITETFPQGPLGEVSEVIK 516 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 + DGSY + I + + +V + ++ K +E KA L+ +E K Sbjct: 517 MEDGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSE----KAQALIQALREEAKIE 572 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 + + L A T ++ +++ + + + Sbjct: 573 NRLAEVLQALTPKTPSQDQPNSQEQPQPEEAPA 605 >gi|167893828|ref|ZP_02481230.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia pseudomallei 7894] gi|167918548|ref|ZP_02505639.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia pseudomallei BCC215] Length = 259 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ EL+A Y+ + E + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I V ++ Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVK 368 + F++VK Sbjct: 222 RSITPPPFEQVK 233 >gi|53723651|ref|YP_103096.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia mallei ATCC 23344] gi|121601461|ref|YP_993254.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia mallei SAVP1] gi|124384406|ref|YP_001029302.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia mallei NCTC 10229] gi|126440095|ref|YP_001059336.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 668] gi|126450119|ref|YP_001080762.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia mallei NCTC 10247] gi|134277391|ref|ZP_01764106.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 305] gi|166998724|ref|ZP_02264578.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei PRL-20] gi|167719141|ref|ZP_02402377.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia pseudomallei DM98] gi|167902279|ref|ZP_02489484.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia pseudomallei NCTC 13177] gi|217421758|ref|ZP_03453262.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 576] gi|237812660|ref|YP_002897111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei MSHR346] gi|238562190|ref|ZP_00440767.2| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei GB8 horse 4] gi|254177766|ref|ZP_04884421.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei ATCC 10399] gi|254179444|ref|ZP_04886043.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1655] gi|254200043|ref|ZP_04906409.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei FMH] gi|254206378|ref|ZP_04912730.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei JHU] gi|254358208|ref|ZP_04974481.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei 2002721280] gi|52427074|gb|AAU47667.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei ATCC 23344] gi|121230271|gb|ABM52789.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei SAVP1] gi|124292426|gb|ABN01695.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei NCTC 10229] gi|126219588|gb|ABN83094.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 668] gi|126242989|gb|ABO06082.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei NCTC 10247] gi|134251041|gb|EBA51120.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 305] gi|147749639|gb|EDK56713.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei FMH] gi|147753821|gb|EDK60886.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei JHU] gi|148027335|gb|EDK85356.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei 2002721280] gi|160698805|gb|EDP88775.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei ATCC 10399] gi|184209984|gb|EDU07027.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1655] gi|217395500|gb|EEC35518.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 576] gi|237503368|gb|ACQ95686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei MSHR346] gi|238523045|gb|EEP86486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei GB8 horse 4] gi|243065078|gb|EES47264.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia mallei PRL-20] Length = 259 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ EL+A Y+ + E + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP-VIHGSFGYVIAHVSNI 356 A++ K G P + + + +KG T + FG+ I V ++ Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVK 368 + F++VK Sbjct: 222 RSITPPPFEQVK 233 >gi|226227552|ref|YP_002761658.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27] gi|226090743|dbj|BAH39188.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27] Length = 463 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 64/473 (13%), Positives = 130/473 (27%), Gaps = 92/473 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 VG Q + S ++S G + S + L++ L L+ L Sbjct: 48 DGIAAIVGDQVILVSEVMSSVNSARAQ-----GAKIESAK-DLSKLEQDALQQLIEAELL 101 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGI-NEKEYIDHYTK 157 Q + +E + + + FS D F L G +E+ Sbjct: 102 VQKAKLEKIEVNDVELQSGVDSRE--KQARGNFSTDAEFRQALKENGFGTVEEWRKMQLD 159 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 R+ + + L + +NA + + + Sbjct: 160 AARRSKLQQEVMQ-------------------------KLQRDGKVTAVNVTNAEIDEAY 194 Query: 218 EKYKDNYRAPE----YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 E+ K E ++I + +KK + D L+A+ +K+ Sbjct: 195 EEAKTQLPRKEARVGMRQIVVATKPSEDAKKKARVKIDSLRAQLDKHP------------ 242 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 + F +A+ + + LG + + +F Sbjct: 243 --------------------EDFENIAKRESMDGTRELGGDLGWNRRGRMV-PEFDRMMF 281 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L G +PV+ FGY I V ++P+ + + + + K Sbjct: 282 AL-NPGVISPVLETGFGYHIIRVDRVQPAEVKA--------RHILIRPTVDSVDEGRTKL 332 Query: 391 LEEFLAL----GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 L + +A G S D +S + S + Y+ L Sbjct: 333 LADSVAGAWRKGGSYDSLSVKFHDESGGEEKTI----PEYPRSELPEAYRNALEGAKLND 388 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 A ++ Q+ + + E T +++ K + Sbjct: 389 IIGPFAIPDPAAGANKFIIAQVTLLDEGGEMTVTEARTRIREHLAGEKKMRRL 441 >gi|313669248|ref|YP_004049532.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640] gi|313006710|emb|CBN88180.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica 020-06] Length = 359 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 83/273 (30%), Gaps = 34/273 (12%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + + + E + + ++ + A + Sbjct: 92 EVITRRRLAQAVADAKANLPKGVQISDTALTEQVLMQLVNQSLIVQAGKRRNIQATEAEI 151 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 + +P +R I + +S E+ E+ K+ Sbjct: 152 DAVVAQNPALKNLSPAQRRELADNIIAEKVREQAVMQNSRVSEAEVDRFIEQAQKQGITL 211 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + Sbjct: 212 PEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNGTDFSGLARQYSQDAGAGNG 271 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG FS + ++ +L K G + + FG+ I ++ ++ + T ++ Sbjct: 272 GDLGWFSDGVMV-APFEAAVHAL-KPGQVSAPVRTQFGWHIIKLNEVRDAGTP-----EE 324 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 I N +R +K ++ L L G +D Sbjct: 325 RIRNSVRQYIFQQKAEQATAELLRDLHSGAYID 357 >gi|110346942|ref|YP_665760.1| hypothetical protein Meso_4128 [Mesorhizobium sp. BNC1] gi|110283053|gb|ABG61113.1| hypothetical protein Meso_4128 [Chelativorans sp. BNC1] Length = 725 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 77/560 (13%), Positives = 177/560 (31%), Gaps = 96/560 (17%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 ++++ ++ ++S ++ ++ A + EN +++ ++ Sbjct: 172 MSQEALLETVEDLVSDQLILRWAANRKPEADESFQHAIKHINENLNLE--SFADQLHTER 229 Query: 206 ADPSNAVLTQWFEKYKDNY-------------------RAP-------EYKRISYILFDV 239 S + + ++++K K Y + P E R S + Sbjct: 230 ISISESSIREYYDKNKARYEGRSFTEVRDEIRRTLVAEQEPAFVEDYLEKLRTSASITRS 289 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-------PNQKEADEAFQSLKK 292 + S EL+ Y +N +++ P V++L F Q+EA A ++ Sbjct: 290 FDLLDVPAPSQKELETYYRQNIDRFKLPRRAIVDELEFSASQFSPKAQQEAASALLGIQG 349 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD----VSLADSIFSLAKKGDFTPVIHGSFGY 348 G F A K+ S+ +P+ +F+L G+ V Y Sbjct: 350 GATFQATAGRFSKAR------FSSRAEVPEGSRNPDWDKYVFALV-PGELASVFQAGGSY 402 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR------------------ 390 + + + P+ SF EV+ I +R K ++ ++ Sbjct: 403 YVVRLQEVMPAGAKSFAEVRPTIMTTVRTQKEQRWFADNGEKTLFTIKGQRYSLRDFYKE 462 Query: 391 -----LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 L E + ++ + + DV K +A E L + Sbjct: 463 YEEASLREQFEGAEGLKRLANALIDRMLLVSDTYDRLLDVANKPLAD----ETRLRLLRQ 518 Query: 446 KDDPLSKDHTVALPDGSYMWV----QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 + D + + D + + P + R + + A Sbjct: 519 MMEQEEVDDRIEVSDEQIQAFYSDNRDRLVSPPKSR----IRYVRIGLGSSEADASRARE 574 Query: 502 KANQLVLEYSKE--GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP--- 556 ++++ + + G +F + + + T ++ + G D + ++ S P Sbjct: 575 RSDEAYRKLTGAVPGSDFASVAQEYSEDVETASKGGEFPDWIGESG-DPLGELMSHPFHE 633 Query: 557 -----VEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVI 607 P E G S + +VT + + K YLT ++ + + + Sbjct: 634 AIQDMEPGKVGKPFELGGSIYIVEVTERTLPQQLTLDEAKPFIEEYLTNQQHRSMAEELQ 693 Query: 608 AYLKSQYSVTVHDNLIQRYL 627 + V ++ +++ YL Sbjct: 694 RRQLQEAKVQLYPQVLEEYL 713 >gi|260886177|ref|ZP_05736674.2| putative peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC 51259] gi|260850470|gb|EEX70339.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC 51259] Length = 487 Score = 87.0 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 25/180 (13%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + +KD +R Y + + A Y+ K + ++ ++F Sbjct: 96 KAFKDEFRT-------YRDLQLTPFMVDQAFIDSTAIALYDNMKTRLGGKDLLRPAHILF 148 Query: 278 PNQKEADEAFQSLKK------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDV-- 323 ++ A A + K G F LA+E L G P Sbjct: 149 SVKQNATAAEKETAKMRADSVYQVIMNGGNFAALAKEYSGDLGSALRGGEISWIGPGATV 208 Query: 324 -SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++ + L K G+ + + FGY I + K + E++ I ++ E Sbjct: 209 KEFEEAAYKL-KVGEVSQPVLTPFGYHIIKMQERK--QLEPYAELRDQILYSLKQQGVDE 265 >gi|262275062|ref|ZP_06052873.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP 101886] gi|262221625|gb|EEY72939.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP 101886] Length = 432 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 127/379 (33%), Gaps = 85/379 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + ++ + + + + + + L+++ILD L+ Sbjct: 28 DRVVAVVNDGVILSSDID-ALEKTVALNADQ--ANLPPKDV----LEQQILDQLILEELQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ D R+ I K+ S RL R GI+ Y D + + Sbjct: 81 LQEAKRLGIRIDDTRLEQAINSI----AKERNLSVSQLQERLKRNGISWSSYRDQIRREM 136 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++ + I + + V ++A + Sbjct: 137 TISEARNA----------------------QVRRRISILPQEVESLAS----------QL 164 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 N EY+ +S+I ++E +K E R + Sbjct: 165 NAKNLENVEYR-LSHIQLRLNEGAEK----------------------EEREI------V 195 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A+ + LK G+ F LA K+L G E +P AD I + KG Sbjct: 196 AETANRLVKELKDGRDFAALALANSKGPKALQGGDWGWMRLEEMP-TIFADQIKN-NGKG 253 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391 GY I ++++K +V+ EVK I + A ++ + ++ Sbjct: 254 AIIGPFRSGVGYHILKITDVKGLKSVAVTEVKARHILIKPSIVLSDDGAKRQLNQMIAQI 313 Query: 392 EEFLALGTSMDEISRREKI 410 ++ S ++++++ Sbjct: 314 KK---GEKSFEDLAKQYSA 329 >gi|315127730|ref|YP_004069733.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp. SM9913] gi|315016244|gb|ADT69582.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp. SM9913] Length = 431 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 45/370 (12%), Positives = 112/370 (30%), Gaps = 64/370 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + S + ++ N + + L + ++ LV+ + Sbjct: 28 DKVIGIVNQGVILKSEVDTIVDRVKKQAEKQ-----NQQLPKDETLRVQAIERLVNQTLM 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +GLE ++ +A + D+ + G + + Y + K + Sbjct: 83 MQMAERMGLEISDSQLDQTLANMA---KEQGGTIADL-RRTIEASGESFQAYREEIRKEI 138 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFY------FENRSVDYIVLNNRHVPAIADPSNAV 212 + V + S+ +D + E + +I+++ A D S+A Sbjct: 139 TTQQVTRANVDRRIYVSDQEIDNLLKIMDSQGQNAEEYDIGHILIDIPSGAAADDVSSAK 198 Query: 213 LTQWFEKYKDNYRA-PEYKRISYILFD------------------VHEKEKKIEISNDE- 252 +K + E+KRI+ + ++ + Sbjct: 199 TRA--DKVIELLEDGQEFKRIAISSSSGSKALEGGQLGWMGINEMPSLFAEAVKGKKKDA 256 Query: 253 ------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ----SLK 291 + + + ++ ++++A L+ Sbjct: 257 IIGPLRSGAGFHIIKVQDVRGRQVVETTEVKSRHILIKPSIILSEEKARTMLAGFVKDLR 316 Query: 292 KGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F +LA+E + G ++ + D++ SL K + + FG Sbjct: 317 AGDVDFAELAKEHSQDPGSALKGGQYDWTDPTTYVPAFRDTLLSLDKN-EISEPFRSQFG 375 Query: 348 YVIAHVSNIK 357 + I + + + Sbjct: 376 WHIVQLLDKR 385 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 46/319 (14%), Positives = 107/319 (33%), Gaps = 31/319 (9%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + + L + + + + + L+ Q S + ++ + A Sbjct: 55 AEKQNQQLPKDETLRVQAIERLVNQTLMMQMAERMGLEISDSQLDQTLANMAKEQGGTIA 114 Query: 212 VLTQWFEKYKDNYRA--PEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 L + E ++++A E ++ I+ +++I +S+ E+ + + + E Sbjct: 115 DLRRTIEASGESFQAYREEIRKEITTQQVTRANVDRRIYVSDQEIDNLLKIMDSQGQNAE 174 Query: 269 IRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLG 313 + ++ + AD+ + L+ G++F ++A K+L LG Sbjct: 175 EYDIGHILIDIPSGAAADDVSSAKTRADKVIELLEDGQEFKRIAISSSSGSKALEGGQLG 234 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--- 370 +P + A+++ KK + G+ I V +++ V EVK Sbjct: 235 WMGINEMPSL-FAEAVKG-KKKDAIIGPLRSGAGFHIIKVQDVRGRQVVETTEVKSRHIL 292 Query: 371 IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 I + KA + K + A E+++ S D G+ Sbjct: 293 IKPSIILSEEKARTMLAGFVK---DLRAGDVDFAELAKEH---SQDPGSALKGGQYDWTD 346 Query: 429 EVAAIPYKEQLLFRVFGKD 447 +P L + + Sbjct: 347 PTTYVPAFRDTLLSLDKNE 365 >gi|254468048|ref|ZP_05081454.1| chaperone SurA, putative [beta proteobacterium KB13] gi|207086858|gb|EDZ64141.1| chaperone SurA, putative [beta proteobacterium KB13] Length = 428 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 62/432 (14%), Positives = 141/432 (32%), Gaps = 69/432 (15%) Query: 13 VAKIFLVV-LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 + KI + L V F L V V + + + + L Q Sbjct: 5 LIKIIFFLCLLVNFSFVSSYQEL-----DRIVAIVNKDVITHNDLTEGVDKALLFFQQN- 58 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 + E ++KK+LD L+ ++ + ED ++A + I N+ Sbjct: 59 ----SIEPPEESIIEKKVLDELIEQKIIEGYAEDWNIKASQEDIDSLIQNI----LSANQ 110 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENR 190 + D S L ++G + + + + + V + S + + K + R Sbjct: 111 ITLDELKSNLKQQGSSYDKLLKSLSYEIILKKVKNREISSKLNISEYEIKKHKEKMAKIR 170 Query: 191 SVDYIVLNNRHVPAIADPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHE------ 241 D L++ + ++P+ + E+ D + ++ +I+Y D + Sbjct: 171 -PDVFDLSHILIKFSSEPTAEEKKEKRKLGEEIFDKLKTDDFAKIAYEFSDSPDANEGGS 229 Query: 242 --KEKKIEISNDELQAEYEKNKEKYFSP----------------------------EIRT 271 K K+ E+ + + +Y +P + Sbjct: 230 LGKLKQSELPEIFIDKLNNLSAGEYSTPFESNNGIHIIKINQVESYSESKNSSQKIKKYF 289 Query: 272 VEQLVFPNQKEA--DEAFQSLK-------KGKKFIQLAEEQGKSLSDISLGSFS--KEYI 320 ++ +V + A D+ + LK G F +A++ + S + G E + Sbjct: 290 IKHIVLKTSEVASEDDVIKKLKRYKNEIDSGADFSVIAKKYSEDFSAANGGEIGWINEGL 349 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D D S+ + + + G+ I ++ K S + + I ++ + Sbjct: 350 LDQEF-DKQLSIIDQNEVSQPFKTDLGWHIIQYTDSKFEDLAS-ENIDNKIKYELINERT 407 Query: 381 SEKVKEDYKRLE 392 ++ + L+ Sbjct: 408 ELLYQDWFSALK 419 >gi|315500239|ref|YP_004089042.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis excentricus CB 48] gi|315418251|gb|ADU14891.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis excentricus CB 48] Length = 332 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 7/164 (4%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 I + +++ Y++ + E ++ + EAD + L+ G F +A E+ Sbjct: 126 DASIDDKKVKDLYDEQVKLAQKSEEIRARLILVKTRPEADNVMRQLQGGSLFEAMAMERS 185 Query: 305 KSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +G F+ + IP+ + AK G + G+ + V +P Sbjct: 186 IDQATRFNGGDMGYFTTDVIPESY--RAALMTAKPGQIAGPVQIDGGWAVFKVEERRPEQ 243 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDE 403 ++ +E + I + +++ + + EFL G S E Sbjct: 244 PMTIEEARPGIVSALKLEQVRGLLGGLRDGARVEFLVKGLSSSE 287 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 36/231 (15%) Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 A +LKKG +LA+ + + + LG E D S+ D Sbjct: 90 AQAALKKGIDRTELAQRRIAAAREDILGHMLLEQSVDASIDDK----------------- 132 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 V ++ + ++I ++ + K + ++L+ G+ + ++ Sbjct: 133 ------KVKDLYDEQVK-LAQKSEEIRARLILVKTRPEADNVMRQLQ----GGSLFEAMA 181 Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465 I F G D+ IP P V + DG + Sbjct: 182 MERSID----QATRFNGGDMGYFTTDVIPESY---RAALMTAKPGQIAGPVQI-DGGWAV 233 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 +++E P + +EE + K + + + +E+ +G + Sbjct: 234 FKVEERRPEQPMTIEEARPGIVSALKLEQVRGLLGGLRDGARVEFLVKGLS 284 >gi|33594430|ref|NP_882074.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] gi|33597875|ref|NP_885518.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella parapertussis 12822] gi|81713668|sp|Q7W5E0|PLP1_BORPA RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Rotamase; Flags: Precursor gi|167016622|sp|P40415|PLP1_BORPE RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Protein p13; AltName: Full=Rotamase; Flags: Precursor gi|33564505|emb|CAE43820.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] gi|33574304|emb|CAE38637.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella parapertussis] gi|332383841|gb|AEE68688.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis CS] Length = 258 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 68/158 (43%), Gaps = 4/158 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297 + + +K +++ +++AEYEK K++ V ++ ++K A++ +K K KF Sbjct: 99 MADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKNKFD 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ K G ++ A+++ L K + FG+ + V Sbjct: 159 DLAKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVD 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +P + +V+ + +R + K+ ++ + Sbjct: 219 DTRPVEFPAMDQVRPQLEEMLRQQTLANYQKQLREQAK 256 >gi|237746912|ref|ZP_04577392.1| chaperone SurA [Oxalobacter formigenes HOxBLS] gi|229378263|gb|EEO28354.1| chaperone SurA [Oxalobacter formigenes HOxBLS] Length = 468 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 145/480 (30%), Gaps = 107/480 (22%) Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 + + + ++ N L K++L++++ + Q +++ Sbjct: 59 NNDVITMGELNERIQMIESQLQKQ-----NVNLPPRAELQKQVLEHMIVESAQMQLAKEM 113 Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 GL D ++ IAR + + F + R+G + + + + ++ + Sbjct: 114 GLRIDDTQLDRTIARI----AESKHMTVPQFQQYIERDGTSFESHREKIRSEITMQRLRD 169 Query: 167 M-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 V ++ ++ +D + + Sbjct: 170 REVVNKIQINDAEVDHLLGADSQM-----------------------------------Q 194 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 PE R+ +IL + E +I+ + A++ Sbjct: 195 MPEQVRLGHILIRIPENASPEQIAEKRER----------------------------AEK 226 Query: 286 AFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 Q L+ G F Q A + LS +G S + +P + AD++ + K G+ T +I Sbjct: 227 VLQILQSGGDFQQNAASYSDADEGLSGGDIGWRSTDRLPKI-FADALVGV-KPGNITGII 284 Query: 343 HGSFGYVIAHVSNIK--PSFTVSFQEVKK--------------DIANQMRITKASEKVKE 386 G+ I V + + + + + +A K+ + Sbjct: 285 KSPNGFHILKVLDKRSMSTGPEPVAGAADGNAVQQIHARHILIKVNQLVSADEAKRKLLD 344 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 +R++ S +E+++ + G +P E+ L + Sbjct: 345 LKQRIQN---DSASFEELAKTYS----NDTSASRGGDLGWIYPGDTVPEFEKALVSL--- 394 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 P V G ++ + + D LE K+ + K AE QL Sbjct: 395 -QPGEISEPVETQFGFHLIQVLDKKTD--DVSLERKRIAAKQALRERKIAEATEEWLRQL 451 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 16/149 (10%) Query: 268 EIRTVEQLVFPNQK--EADEAFQSL--------KKGKKFIQLAEEQGKSLS---DISLGS 314 + ++ + ADEA + L F +LA+ S LG Sbjct: 318 QQIHARHILIKVNQLVSADEAKRKLLDLKQRIQNDSASFEELAKTYSNDTSASRGGDLGW 377 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 ++ SL + G+ + + FG+ + V + K S + + Sbjct: 378 IYPGDTV-PEFEKALVSL-QPGEISEPVETQFGFHLIQVLDKKTDDV-SLERKRIAAKQA 434 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDE 403 +R K +E +E ++L + + +++ Sbjct: 435 LRERKIAEATEEWLRQLRDRAYVEYRLND 463 >gi|295098567|emb|CBK87657.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 428 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 111/365 (30%), Gaps = 57/365 (15%) Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + L +IL+ L+ + Q + +G+ ++ IA K N + D Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVTISDEQLDQAIANI----AKQNNITPDQ 113 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD-- 193 SRLA +GI+ Y + K + ++V + +D + Sbjct: 114 MRSRLAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTE 173 Query: 194 ------YIVLNNRHVPAIADPSNAVLTQWFEK--YKDNY--------------------- 224 I L A + + E+ D++ Sbjct: 174 LNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGDDFGKLAITYSADQQALKGGQMGW 233 Query: 225 -RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFP 278 R E + +K + + K + + ++ Sbjct: 234 GRIQELPSLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLK 293 Query: 279 ---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325 + + ++ +K GK F + A+E + + G ++ I D + Sbjct: 294 PSPIMTDDQARAKLEQIAADIKSGKTTFDKAAKEFSQDPGSANQGGDLGWAAADIYDPAF 353 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++ L KG +P +H SFG+ + + + + + + K + K SE+ Sbjct: 354 RDALMKL-NKGQMSPPVHSSFGWHLIQLMDTR-NVDKTDAAQKDRAYRMLFNRKFSEEAA 411 Query: 386 EDYKR 390 + Sbjct: 412 TWMQE 416 Score = 57.3 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 17/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + +E +++ I E+ A ++ + + + ++ P Sbjct: 126 ATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPE 185 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 + +A + + G F +LA + G I + SL Sbjct: 186 NPTSDQAAEAESQARAIVEQARNGDDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQ 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386 S AKKGD I G+ I V++++ S +S EV I + ++ + Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARA 305 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +++ + G + + + K S D + G P L ++ Sbjct: 306 KLEQIAADIKSGKTTFD--KAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKL 360 >gi|126734461|ref|ZP_01750208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp. CCS2] gi|126717327|gb|EBA14191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp. CCS2] Length = 280 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 61/171 (35%), Gaps = 6/171 (3%) Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 Y +R + ++ ++Q Y+ E + L+ ++E Sbjct: 90 EYTLSNERRALIAADVITSIADNA-VTEADVQTAYDARFENAEEIQEFNAAHLLVETEEE 148 Query: 283 ADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 A A + +G F +A + + +LG F + + +++ L G + Sbjct: 149 AIAAKARIDEGAAFADVARDVSTGPTGPNGGNLGWFGPGAMV-PTFEEAVMGL-DVGGVS 206 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 FG+ +A + + + +++ IA +++ + ++ E + Sbjct: 207 EPFETQFGWHVATLLETRVQPRPTIDDLRPQIAQELQEAAITARLDELAEA 257 >gi|74318356|ref|YP_316096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] gi|121956487|sp|Q3SGF9|SURA_THIDA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|74057851|gb|AAZ98291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus denitrificans ATCC 25259] Length = 436 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 114/371 (30%), Gaps = 76/371 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V + + + + + +S++ N+ L+K++L+ +V+ L Sbjct: 36 NHIVAVVNDEVITRQELAKRYDEVVRNLSRQ-----NTPLPPRNVLEKQLLERMVTELAL 90 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ AD V + R NK + L +EG +D + Sbjct: 91 QQHARNTGVRADPTLVERALQRIAA----QNKLDMAGLQAALEKEGQT----LDGMRNTI 142 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++ R VD S+A + + + Sbjct: 143 RNELLIA-------------------RARERDVD----------NRISVSDAEIDGYLQT 173 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 EY S+IL V E +I R Sbjct: 174 QAQQGAETEY-NFSHILVSVPENASPEQIRE-------------------RRAR------ 207 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDF 338 A++ L G F QL+ + + G+F + +L + G+ Sbjct: 208 ---AEDILAQLAAGADFAQLSASHSDAPDALKGGNFGWRASGKLPALFVEALKPMQPGEI 264 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFL 395 +P++ G+ I + + + + + + + T + + +L+E + Sbjct: 265 SPLLRSGNGFHILKLVDKR-GLDATLSVTQTHARHILIKTNEITSEADARNRLLQLKERI 323 Query: 396 ALGTSMDEISR 406 G DE++R Sbjct: 324 DNGVKFDELAR 334 Score = 67.7 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 15/140 (10%) Query: 269 IRTVEQLVFPNQK---EADE------AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFS 316 ++ + EAD + + G KF +LA E + LG + Sbjct: 293 QTHARHILIKTNEITSEADARNRLLQLKERIDNGVKFDELARLHSEDASASKGGDLGWIN 352 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 ++ +L + G+ + + FG+ + V + + K +R Sbjct: 353 PGDTV-PDFEKAMNAL-QPGEVSAPVQSPFGWHLIQVLERRDQDVTQ-ERQKLMARQAIR 409 Query: 377 ITKASEKVKEDYKRLEEFLA 396 KA E ++ +++ + Sbjct: 410 ERKAEEAFQDWVRQIRDAAY 429 >gi|163788664|ref|ZP_02183109.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium ALC-1] gi|159875901|gb|EDP69960.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium ALC-1] Length = 647 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 56/437 (12%), Positives = 132/437 (30%), Gaps = 78/437 (17%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +V+L + F FS S ++ V + + S F+ + + L ++ + + Sbjct: 8 LIVVLLALNF--------SFSQDKDSELIKVDGESIMTSEFLRVYNKNLELVKDESQKDI 59 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L + + + L D + Sbjct: 60 D-----------GYLKLFTEYQLKLKEAKRLKLHEDDKYQREFL---------------- 92 Query: 136 VFVSRLAREGINEKEYIDHYTKML--SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + +L + ++E + D K + +R + D K + E ++ Sbjct: 93 RYKKQLTKNYLSENKVTDVLVKEAYDRSNQDINASHILVRLAETETDTLKAY-NEVLALR 151 Query: 194 YIVLNNRHVPAIADPSN------AVLTQW------FEKYKDNYRAP-----EYKRISYIL 236 ++ + N L + ++ Y P R + Sbjct: 152 ERAISEGFDKVKTEVHNGKTIFLEDLGYFSAFKMVYDFETAAYNTPVDEISMPFRTQFGY 211 Query: 237 FDVHEKEKKI---EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 V KEK+ ++ + ++ K+ PE R ++ ++ L +G Sbjct: 212 HVVWVKEKRQSRGTVTAAHIMVALKQ-KDSLLDPEQRI------------NDIYKKLNQG 258 Query: 294 KKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA++ S + G F + F L GD + ++G+ Sbjct: 259 ENFDALAKQFSDDKSSSNKGGKLSPFKSGQLSSEEFESQAFGLKADGDVSKPFKTAYGWH 318 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I +KP F+++K + +++ S+ + + S D ++ Sbjct: 319 IVKRIKLKP--IQDFKDLKPSLEVKVKRDSRSKLINAAMVSELKKRYN-MSYDADAKAYF 375 Query: 410 IVSIDLPLVDFAGKDVK 426 I + + + Sbjct: 376 KSIITKDFFARSWRLPE 392 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 3/140 (2%) Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 ++A Y KNK KY + V ++ + +KKGK + + + Sbjct: 494 IEAYYSKNKSKYQWKDRVEVVMASSADESHMKSVLKMMKKGKSEEAINKALNTDAKQNVI 553 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 + S I D L AKKG + + + + + V + P+ + +E K ++ Sbjct: 554 FTKSTYAIDDDKLPTE--FKAKKG-LSKIYKHNEAFHVIDVKALLPAGNKTLEEAKGNVI 610 Query: 373 NQMRITKASEKVKEDYKRLE 392 N + + +K+ YKR + Sbjct: 611 NDYQSEIEASWIKDLYKRFK 630 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 116/335 (34%), Gaps = 36/335 (10%) Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---PNQKEADEAFQ 288 + Y + ++++ ++ Y++ S + ++ + + +A+ Sbjct: 92 LRYKKQLTKNYLSENKVTDVLVKEAYDR------SNQDINASHILVRLAETETDTLKAYN 145 Query: 289 SL------KKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + + F ++ E GK++ LG FS + + ++ + + Sbjct: 146 EVLALRERAISEGFDKVKTEVHNGKTIFLEDLGYFSAFKMV-YDFETAAYN-TPVDEISM 203 Query: 341 VIHGSFGYVIAHVSNIKPSF-TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 FGY + V + S TV+ + + + + +++ + YK+L + G Sbjct: 204 PFRTQFGYHVVWVKEKRQSRGTVTAAHIMVALKQKDSLLDPEQRINDIYKKLNQ----GE 259 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 + D ++++ S D + GK K + E+ + FG Sbjct: 260 NFDALAKQF---SDDKSSSNKGGKLSPFK--SGQLSSEEFESQAFGLKADGDVSKPFKTA 314 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 G W +K + +++ ++ K ++ +++ + + ++ Sbjct: 315 YG---WHIVKRIKLKPIQDFKDLKPSLEVKVKRDSRSKLINAAMVSELKKRYNM--SYDA 369 Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 K S++T + R + F D +FS Sbjct: 370 DAKAYFKSIITKDFFARSWRLPEDFQKD--KTIFS 402 >gi|71908519|ref|YP_286106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] gi|71848140|gb|AAZ47636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] Length = 263 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 5/157 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + + K IS+ +L+AEYE K S E + ++ + +A L KG+KF + Sbjct: 107 LSDYVKAHPISDAQLKAEYELIKNNLGSTEYK-ARHVLVEKEDDAKAIIAKLDKGEKFSE 165 Query: 299 LAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 LA+ + G LG S +++ L K + FGY + + + Sbjct: 166 LAKQSKDPGSKDKGGELGWSSPNAYVKP-FGEALGKLKKGEYTKTPVKSDFGYHVIQLDD 224 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +P F +VK + + + VKE + + Sbjct: 225 SRPMTPPPFDQVKPQLQQRAGQQQVENLVKELRGKAK 261 >gi|53719054|ref|YP_108040.1| putative exported isomerase [Burkholderia pseudomallei K96243] gi|76809971|ref|YP_333855.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia pseudomallei 1710b] gi|126452457|ref|YP_001066604.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1106a] gi|167738143|ref|ZP_02410917.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 14] gi|167815330|ref|ZP_02447010.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 91] gi|167823737|ref|ZP_02455208.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 9] gi|167845286|ref|ZP_02470794.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei B7210] gi|167910520|ref|ZP_02497611.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 112] gi|226197257|ref|ZP_03792834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pakistan 9] gi|242315812|ref|ZP_04814828.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1106b] gi|254189167|ref|ZP_04895678.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei Pasteur 52237] gi|254198249|ref|ZP_04904671.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei S13] gi|254259998|ref|ZP_04951052.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1710a] gi|254297327|ref|ZP_04964780.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 406e] gi|52209468|emb|CAH35420.1| putative exported isomerase [Burkholderia pseudomallei K96243] gi|76579424|gb|ABA48899.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia pseudomallei 1710b] gi|126226099|gb|ABN89639.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1106a] gi|157807500|gb|EDO84670.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 406e] gi|157936846|gb|EDO92516.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei Pasteur 52237] gi|169654990|gb|EDS87683.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei S13] gi|225930636|gb|EEH26646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pakistan 9] gi|242139051|gb|EES25453.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1106b] gi|254218687|gb|EET08071.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei 1710a] Length = 259 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 4/132 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + KK + S+ EL+A Y+ + E + ++ N+++A + +K G KF L Sbjct: 103 EDFLKKNQPSDTELKARYDDLVKNAGGREY-HLHHILVDNEQQAKDLIAKIKGGAKFEDL 161 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++ K G +S A + L K + FG+ I V ++ Sbjct: 162 AKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDV 221 Query: 357 KPSFTVSFQEVK 368 + F++VK Sbjct: 222 RSITPPPFEQVK 233 >gi|260596477|ref|YP_003209048.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter turicensis z3032] gi|260215654|emb|CBA27953.1| Chaperone surA [Cronobacter turicensis z3032] Length = 440 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 114/386 (29%), Gaps = 65/386 (16%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +IL+ L+ + Q + +G++ ++ Sbjct: 57 LMQSVKLNANQAGQQLP--------DDSTLRHQILERLIMDQIMLQMGQKMGVKISDDQL 108 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y K + ++V + Sbjct: 109 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRAQIRKEMIISEVRNNEVRRRVTI 164 Query: 175 SNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAVLTQW------------ 216 ++ I++ P S A Sbjct: 165 LPQEVETLAEQVGNQNDASTELNLSHILIPLPENPTADQVSEAETQARSIIDQARNGGDF 224 Query: 217 ------FEKYKDNY--------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 + + R E + +K I + K + Sbjct: 225 GKLAITYSADQQALKGGQMGWGRIQELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVND 284 Query: 263 KYFSPE-----IRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSL 307 + ++ +++ +E +K GK F Q A E + Sbjct: 285 LRGQSQTVSVTEVHARHILLKPSPIMTDQQARQKLEEIAADIKSGKTTFAQAAREFSQDP 344 Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G ++ I D + D++ +L+K G + +H SFG+ + + + + S Sbjct: 345 GSANQGGDLGWAAADIYDPAFRDALMNLSK-GQMSTPVHSSFGWHLIELLDTRKSDRTDA 403 Query: 365 QEVKKDIANQMRITKASEKVKEDYKR 390 + K + K SE+ + Sbjct: 404 AQ-KDRAYRMLFNRKFSEEAATWMQE 428 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 25/243 (10%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YRA K + +E +++ I E++ E+ + + + ++ P Sbjct: 136 NYNTYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLSHILIPL 195 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA + G I + S+ Sbjct: 196 PENPTADQVSEAETQARSIIDQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSVF 255 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK-----DIANQMRITKA 380 S AKKGD I G+ I V++++ S TVS EV + M +A Sbjct: 256 AQALSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSPIMTDQQA 315 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 +K++E ++ + T+ + +R S D + G P L Sbjct: 316 RQKLEEIAADIK---SGKTTFAQAAREF---SQDPGSANQGGDLGWAAADIYDPAFRDAL 369 Query: 441 FRV 443 + Sbjct: 370 MNL 372 >gi|163802667|ref|ZP_02196558.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4] gi|159173555|gb|EDP58375.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4] Length = 427 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 68/404 (16%), Positives = 134/404 (33%), Gaps = 90/404 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 KI+ ++ L G++ A + V V + S + K Q G Sbjct: 1 MKIWKSLIVTTLLSCGVTAAPAEL--DKVAVIVNDGVILQSDIDTAMKTLQANARQS-GK 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + S L +++++ L+ Q + IG+ D R+ IA ++N S Sbjct: 58 SLPSAGV----LKEQVVEKLIIDTLQGQEAKRIGVRIDDNRLNQAIAEI----ARNNNQS 109 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + EG+N E+ + K ++ ++ V R ++ Sbjct: 110 VEQLAASVQMEGLNYSEFREQIRKEIAASEARNALV-------------------RRRIN 150 Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + A +NA + +I +I + + K E+ Sbjct: 151 ILPAEVDSLTDQLAQETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSD 309 + EA+ + LK G F ++A K+L Sbjct: 192 ---------------------------EAEANALVKKLKAGADFSEMAYTYSKGPKALQG 224 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G KE +P AD I + KG+ G+ I + ++K TV+ EV Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGNIIGPFRSGIGFHILKIEDVKGLETVAVTEVNA 282 Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + A +++ E +R++ A S +++ + Sbjct: 283 RHILIKPTVILSDDGAKKELNEFIRRIK---AGEASFGQLATQY 323 >gi|156935427|ref|YP_001439343.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter sakazakii ATCC BAA-894] gi|156533681|gb|ABU78507.1| hypothetical protein ESA_03285 [Cronobacter sakazakii ATCC BAA-894] Length = 428 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 114/386 (29%), Gaps = 65/386 (16%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +IL+ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNANQAGQQLP--------DDSTLRHQILERLIMDQIMLQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRAQIRKEMIISEVRNNEVRRRVTI 152 Query: 175 SNLLLDQAKRFYFENRSVDY------IVLNNRHVPAIADPSNAVLTQW------------ 216 ++ I++ P S A Sbjct: 153 LPQEVETLAEQVGNQNDASTELNLSHILIPLPENPTADQVSEAEAQARSIIDQARNGGDF 212 Query: 217 ------FEKYKDNY--------RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 + + R E + +K I + K + Sbjct: 213 GKLAITYSADQQALKGGQMGWGRIQELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVND 272 Query: 263 KYFSPE-----IRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSL 307 + ++ +++ +E +K GK F Q A E + Sbjct: 273 LRGQSQTVSVTEVHARHILLKPSPIMTDQQARQKLEEIAADIKSGKTTFAQAAREFSQDP 332 Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 + G ++ + D + D++ SL+K G + +H SFG+ + + + + S Sbjct: 333 GSANQGGDLGWAAADVYDPAFRDALMSLSK-GQMSTPVHSSFGWHLIELLDTRKSDRTDA 391 Query: 365 QEVKKDIANQMRITKASEKVKEDYKR 390 + K + K SE+ + Sbjct: 392 AQ-KDRAYRMLFNRKFSEEAATWMQE 416 Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 25/243 (10%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YRA K + +E +++ I E++ E+ + + + ++ P Sbjct: 124 NYNTYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA + G I + S+ Sbjct: 184 PENPTADQVSEAEAQARSIIDQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSVF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK-----DIANQMRITKA 380 S AKKGD I G+ I V++++ S TVS EV + M +A Sbjct: 244 AQALSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSPIMTDQQA 303 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 +K++E ++ + T+ + +R S D + G P L Sbjct: 304 RQKLEEIAADIK---SGKTTFAQAAREF---SQDPGSANQGGDLGWAAADVYDPAFRDAL 357 Query: 441 FRV 443 + Sbjct: 358 MSL 360 >gi|145300233|ref|YP_001143074.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853005|gb|ABO91326.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449] Length = 432 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 59/432 (13%), Positives = 136/432 (31%), Gaps = 60/432 (13%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K + +L A + V++V + V +S + Q++ +Q+ G Sbjct: 3 KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKSSAQESGQS 62 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + L K+ LD L+ + Q + GL+ ++ I DNK + Sbjct: 63 LP----DDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAA----DNKMTL 114 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 D ++LAREG+ +Y + + + R V + ++D + + Sbjct: 115 DQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVRRRINISDQEVKQVVDILAKQGQQQ 174 Query: 190 RSVDY----IVLNNRHVPAIADPSNAVLTQWFEKYKD--NYR-----------APEYKRI 232 + I L + + + + + + K ++R A E Sbjct: 175 QQYHVGHIQIALPDNPSAEQLNAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDW 234 Query: 233 SYILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVF 277 S++ + + ++ ++ ++ Sbjct: 235 SWMSPQEMPTLMAEAVQGAAKGDIVGPLRSGAGLHIVKVFDAKGQQQVLQTEVKARHILI 294 Query: 278 P-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVS 324 ++++A D +K GK F LAE+ + G +S + Sbjct: 295 KPSIILSEEKAKGMLDGILHDIKSGKATFASLAEKYSEDPGSAVQGGELGWSDPNVYVPE 354 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 D + L K G+ + + G+ I + + S + ++ + + +E+ Sbjct: 355 FRDMVNRL-KPGELSAPFRTTHGWHIVQLEERRSQDATSKAQ-EQRAYQLIFNRRFTEES 412 Query: 385 KEDYKRLEEFLA 396 + L + Sbjct: 413 QAWLDELRDEAY 424 >gi|238028597|ref|YP_002912828.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1] gi|237877791|gb|ACR30124.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1] Length = 451 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 52/411 (12%), Positives = 110/411 (26%), Gaps = 69/411 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V + R ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVDLIARRLRQQKAPVPPIDELRM-----QVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ D V + R N S D + +RL EG+ ++ L Sbjct: 95 VQKAKEDGIVVDDAMVQATLQRLAA----ANNMSLDQYRARLEAEGVPWNIFVSDARTEL 150 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195 + + V ++ R N Q R +D Sbjct: 151 MLSRLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVAAPQNAPETQIDAA 210 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKK 245 + A A + + + ++ P + + + Sbjct: 211 RKKAEGLLKQALAPGADFERLAKNNSEAKDAKSGGDLGFKPPGSLPADVVQAVAQLRPGQ 270 Query: 246 IEISNDELQAEYEKNKEKYFSPEI-----------RTVEQLVFPNQKEADEAFQS----- 289 + + + +E + P V ++ + EA Sbjct: 271 VNPALIRVPDGFEIVRLVDRRPAQGTSAASPKIVQTHVRHILLRVGEGKSEAQARQQLID 330 Query: 290 ----LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++ G F A + G + LG S ++ SL + G + + Sbjct: 331 IRNKVEAGGDFASFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQISNPV 388 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 389 RTEYGYHLIQVLGRRDAEG-SIQQQMDIARQAIGQRKAEQAYADWLRELRD 438 >gi|54296347|ref|YP_122716.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris] gi|81679579|sp|Q5X877|SURA_LEGPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|53750132|emb|CAH11524.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris] Length = 429 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 54/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + V L G+ A V V + S + I + N + Sbjct: 5 IALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K++L +L+ Q + G+ ++ + I + N + Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188 + ++GI+ +EY + K + + V VG + +N ++Q + Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHL 175 Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224 + + + ++ E+ + Sbjct: 176 KNIVIPLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235 Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 PE + V + I N +L A +N+ + V ++ Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293 Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326 K+ + ++ ++ GK F +A++ + LG + + Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384 ++ SL + + +G+ + V + E K+ + ++ K E V Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408 Query: 385 KEDYKRLEEFLALGTSMDEIS 405 + + L + +++ Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429 Score = 56.9 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 32/298 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + K I ++N++++ + S ++ +V P Sbjct: 125 QEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHLKNIVIPLSE 184 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326 + EA+ +KKG+ F +LA E+ +L LG +P+V A Sbjct: 185 EPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FA 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKV 384 + + K G I G+ + + + V + + + AS Sbjct: 244 KEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVP 299 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 E K++ S + + K S+D G +P E+ + + Sbjct: 300 SEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL- 358 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500 H V+ P + + E I R + E V++ + K E V Sbjct: 359 -------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409 >gi|213161291|ref|ZP_03347001.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 399 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 47/339 (13%), Positives = 109/339 (32%), Gaps = 60/339 (17%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190 + D SRLA +G+N Y + K + ++V + +D + +N Sbjct: 110 TMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249 + + L++ + +P++ + + + E + + + + + Sbjct: 170 ASTELNLSHILIALPENPTSEQVND--AQRQAESIVEEARNGADFGKLAITYSADQQALK 227 Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272 EL + + + Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHA 287 Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEY 319 ++ N ++A +E +K GK F A+E + + G ++ Sbjct: 288 RHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 I D + D++ L K G + +H SFG+ + + + + Sbjct: 348 IFDPAFRDALTKLHK-GQISAPVHSSFGWHLIELLDTRK 385 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|104779703|ref|YP_606201.1| peptidyl-prolyl cis-trans isomerase A [Pseudomonas entomophila L48] gi|95108690|emb|CAK13384.1| putative peptidyl-prolyl cis-trans isomerase A [Pseudomonas entomophila L48] Length = 439 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 50/409 (12%), Positives = 132/409 (32%), Gaps = 65/409 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + I+++ G V + L++++L+ L+ Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPA-----GALEQQVLERLIVENLQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + + + N S + F + LA +G++ + + + + Sbjct: 86 LQIGERSGIRITDEELNQAVGTI----AQRNGMSLEQFRAALAHDGLSYDDAREQIKREM 141 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAK-------RFYFENRSVDYIVLNNRHVPAIA-DPSN 210 + V ++ S + + E R + ++ + A + Sbjct: 142 IISRVRQRRVAERIQVSEQEVKNFLNSDLGKMQLSEEYRLANILIPTPESANSDAIQAAA 201 Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243 +++ K ++ + P + Sbjct: 202 RQAGDVYQQLKQGADFARLAIARSASENALEGGEMGWRKAGQLPPDFAKMLSSMATGDVT 261 Query: 244 KKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLVF---------PNQKEADEAFQSLKK 292 + I I N + + E+ + S + V ++ ++ A+ + +K Sbjct: 262 QPIRIPNGFIILKLEEKRGGESSVLRDEVHVRHILIKPSEIRSDKATEQLAERLYDRIKN 321 Query: 293 GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G+ F +LA+ + G +L+ L + + ++G+ T +G+ Sbjct: 322 GEDFSELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGEVTRPFRTQYGW 379 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 + V + + + + ++ A N +R K E+++ +++ + Sbjct: 380 HVLEVMGRRATDST--AQAREQQAMNVLRNRKYDEELQTWLRQIRDEAY 426 >gi|253576879|ref|ZP_04854204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843746|gb|EES71769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. oral taxon 786 str. D14] Length = 376 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 108/336 (32%), Gaps = 24/336 (7%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I E E+ +L+ + F+ L+ Q + + D A Sbjct: 41 ITENEFDREQRIVLALQPQMEQFMQMEDFRQYLVKQEIAYEYLEAKADEKTKEAGKKKAE 100 Query: 206 ADPSNAVLTQWFEKY-KDNYRAPEYKRISYILFDVHEKE----KKIEISNDELQAEYEKN 260 + + + + E+ K+ A + + + V ++ +IS D+++ E+E Sbjct: 101 EQF-DLMKSSYGEENFKNMLDAQKVSEAEFKDYMVRIYTVMEGERQKISEDDVKKEFEAT 159 Query: 261 KEKYFSPEIRTV----------EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 K+ Y + +R + E+ K A E L KG+ F LA++ + Sbjct: 160 KQDYTTASVRHILINFTDPDGKERTEEETLKLAKEVKAKLDKGEDFAALAKQYSEDPGSK 219 Query: 311 SLGSFSKEYIPDVSLAD-SIFSLAKK-GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 G + + +L + + +GY I V + F+++ Sbjct: 220 DNGGLYENVEVSNWVEAFKQAALTQPLNQIGDPVKTEYGYHIIRVESRTE---KKFEDLT 276 Query: 369 KDIANQMRITKASEKVKE-DYKRLEEFLALGTSM--DEISRREKIVSIDLPLVDFAGKDV 425 ++ + ++ T AS K+ E LE+ + + E S E D + + Sbjct: 277 QEQKDMIQTTLASNKLDEFMAGDLEKKIIKKIDLPKVETSTGENGTGTDTNAGNGSNAGT 336 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 A G + + G Sbjct: 337 DTGTNAGTEGSGNAGNTGTGSNTGNGAANNAGSNSG 372 >gi|148358511|ref|YP_001249718.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila str. Corby] gi|296105860|ref|YP_003617560.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila 2300/99 Alcoy] gi|148280284|gb|ABQ54372.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella pneumophila str. Corby] gi|295647761|gb|ADG23608.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila 2300/99 Alcoy] Length = 429 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 54/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + V L G+ A V V + S + I + N + Sbjct: 5 IALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K++L +L+ Q + G+ ++ + I + N + Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188 + ++GI+ +EY + K + + V VG + +N ++Q + Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHL 175 Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224 + + + ++ E+ + Sbjct: 176 KNIVIPLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235 Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 PE + V + I N +L A +N+ + V ++ Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293 Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326 K+ + ++ ++ GK F +A++ + LG + + Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384 ++ SL + + +G+ + V + E K+ + ++ K E V Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408 Query: 385 KEDYKRLEEFLALGTSMDEIS 405 + + L + +++ Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 32/298 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + K I ++N++++ + S ++ +V P Sbjct: 125 QEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVIPLSE 184 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326 + EA+ +KKG+ F +LA E+ +L LG +P+V A Sbjct: 185 EPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FA 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKV 384 + + K G I G+ + + + V + + + AS Sbjct: 244 KEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVP 299 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 E K++ S + + K S+D G +P E+ + + Sbjct: 300 SEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL- 358 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500 H V+ P + + E I R + E V++ + K E V Sbjct: 359 -------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409 >gi|253988050|ref|YP_003039406.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779500|emb|CAQ82661.1| chaperone SurA precursor (peptidyl-prolyl cis-trans isomerase) [Photorhabdus asymbiotica] Length = 433 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 58/429 (13%), Positives = 129/429 (30%), Gaps = 71/429 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L + ++ +S A + + +V V S INS Q + +Q G Sbjct: 6 TLILGL------MFSVSTAFAAPQQMDKIAAVVNNGVVLESDINSLLQSVKRDAQHAGQQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + E L +IL+ L+ L Q + +G+ + IA N + Sbjct: 60 IPDEH----TLRHQILERLIMDNILLQMAKQMGITIPDQTLDSTIANIAA----QNHITR 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSV 192 D R+ +G++ Y + K + +V + +D + +N + Sbjct: 112 DQMKHRIVADGMSFDTYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNAND 171 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250 + +++ +P +P + + + + + + + Sbjct: 172 SELNISHILIPLPENPDQTQMEK-ATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGN 230 Query: 251 ------DELQAEYEKNKEKYFSPE-----------------------------IRTVEQL 275 EL + + + Sbjct: 231 MGWSKLQELPTLFAAQLQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHI 290 Query: 276 VFP-----NQKEADEAFQSLKKG-----KKFIQLAEE----QGKSLSDISLGSFSKEYIP 321 + ++A Q + F A+E G +L LG + + I Sbjct: 291 LLRISPVMTDEQARAKLQQIAGDIRSGKTDFADAAKEFSEDPGSALRGGDLGWSTPD-IF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG+ + IH SFG+ + + + + + K + K + Sbjct: 350 DPAFRDALMRL-NKGEISQPIHSSFGWHLIQLLDTRKVDKTDVAQ-KDRAYRMLFNRKFT 407 Query: 382 EKVKEDYKR 390 E+ + + Sbjct: 408 EEAQSWMQE 416 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 17/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 D YR K + +E +++ I E+ ++ + + + ++ P + Sbjct: 126 DTYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNANDSELNISHILIPLPE 185 Query: 282 EAD------------EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 D + LK G F +LA + G+ + + +L + Sbjct: 186 NPDQTQMEKATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGNMGWSKLQELPTLFAA 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD-IANQMRITKASEKVKE 386 A+KG I G+ I V++I+ T++ EV I ++ E+ + Sbjct: 246 QLQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHILLRISPVMTDEQARA 305 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +++ + G + + + K S D G P L R+ Sbjct: 306 KLQQIAGDIRSGKT--DFADAAKEFSEDPGSALRGGDLGWSTPDIFDPAFRDALMRL 360 >gi|330996061|ref|ZP_08319955.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT 11841] gi|329574058|gb|EGG55636.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT 11841] Length = 479 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 31/199 (15%) Query: 210 NAVLTQWFE---KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 A L ++ +K +R Y + + EL+ Y+ K Sbjct: 76 EAALDARYDTLSSFKKEFRT-------YRDQQIRPYFVSLSAEEKELRRYYDGMKASIGP 128 Query: 267 PEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAE----EQGKSLSDI 310 + ++ ++A D + +L++G F LA+ ++G + Sbjct: 129 DGLVHPAHIMILVAQKATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGG 188 Query: 311 SL-GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 L G F+K D FSL KG+ + GY I + + K ++E+K Sbjct: 189 DLGGWFAKGQTLK-EFEDVAFSL-NKGEMSKPFLSPMGYHIVWMKDRK--QLEPYEELKP 244 Query: 370 DIANQMRITKASEKVKEDY 388 + + E+V Sbjct: 245 QLQRFLESRGLKERVASIA 263 >gi|307609120|emb|CBW98563.1| hypothetical protein LPW_03901 [Legionella pneumophila 130b] Length = 429 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 54/441 (12%), Positives = 129/441 (29%), Gaps = 71/441 (16%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + V L G+ A V V + S + I + N + Sbjct: 5 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K++L +L+ Q + G+ ++ + I + N + Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFE---------- 188 + ++GI+ +EY + K + + V VG + +N ++Q + Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHL 175 Query: 189 ------------NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY------------ 224 + + + ++ E+ + Sbjct: 176 KNIVIPLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHL 235 Query: 225 -RAPEYKRISYILFDVHEKEKKIEISND----ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 PE + V + I N +L A +N+ + V ++ Sbjct: 236 AELPEVFAKEVVHMKVGQVAGPIRAGNGFHLIKLVAVGGENQRHVIT--QTHVRHILLKP 293 Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLA 326 K+ + ++ ++ GK F +A++ + LG + + Sbjct: 294 DASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELV-PEFE 352 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV--KKDIANQMRITKASEKV 384 ++ SL + + +G+ + V + E K+ + ++ K E V Sbjct: 353 KTMNSLPLH-KVSKPVKTQYGWHLIEVIARR---QKDDSEAFKKQQVRQFLQQRKFVEAV 408 Query: 385 KEDYKRLEEFLALGTSMDEIS 405 + + L + +++ Sbjct: 409 QNWQQHLRSQAYINIVDKDLA 429 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 96/298 (32%), Gaps = 32/298 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + K I ++N++++ + S ++ +V P Sbjct: 125 QEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVIPLSE 184 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326 + EA+ +KKG+ F +LA E+ +L LG +P+V A Sbjct: 185 EPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FA 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKV 384 + + K G I G+ + + + V + + + AS Sbjct: 244 KEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVP 299 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 E K++ S + + K S+D G +P E+ + + Sbjct: 300 SEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL- 358 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500 H V+ P + + E I R + E V++ + K E V Sbjct: 359 -------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409 >gi|259047483|ref|ZP_05737884.1| foldase protein PrsA [Granulicatella adiacens ATCC 49175] gi|259035674|gb|EEW36929.1| foldase protein PrsA [Granulicatella adiacens ATCC 49175] Length = 315 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 28/189 (14%) Query: 229 YKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 Y++ Y+ +K ++++++ Y++ + V+ ++ + A + Sbjct: 110 YRQTIYLNKLMTAAVKKAAAFTDEDIKKYYDEWEP------QIKVQHILIAAKATASDEE 163 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFS 331 Q LK G F +LA+E +G F + + +++ ++ Sbjct: 164 KAAAKAKAEELIQKLKDGADFSELAKENSADTGTASKGGEIGPFKRSDMVK-EFSEASYN 222 Query: 332 LAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 L GD T + FGY I + + F EVK + ++M K + ++ Sbjct: 223 LKNVGDITETPVETQFGYHIIKMLD--KGEKKPFDEVKSQMEDEMLQAKLKDSAY-LHQT 279 Query: 391 LEEFLALGT 399 + + L Sbjct: 280 MVDLLKGAD 288 >gi|220932053|ref|YP_002508961.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168] gi|219993363|gb|ACL69966.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168] Length = 495 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 118/395 (29%), Gaps = 94/395 (23%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV------VSVGRQKVPFS 54 M + +R S+ + + L + G S +S+V V +P Sbjct: 1 MFKKLRNYSKYII-YFVVAALVLTGAFLGFGAYRNSSPAASSVIDPNYIARVNDTSIPRE 59 Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL--EADH 112 ++ + ++ E+ V +L+ L+ L Q E +G+ Sbjct: 60 TYYQYLQNNAQFAQ------LSREQ--QVPYRLNLLNQLIERELLLQEAEKLGIESNPTD 111 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 V +I + + + + L GI +++ + + ++++ Sbjct: 112 KEVKEQINKM----LEAYNITEEKLKELLDSRGIKYEDFKEDIRHNIKTSNIIRK----- 162 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 H + S + + +EK P + Sbjct: 163 -------------------------TIEHTYKGVEVSEDEIREAYEK-----VRPALIAV 192 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + E KIE + EL+ E + + A + LK Sbjct: 193 NIEGEKKKEARAKIEKALKELE-------------EGKAF------GEVAAKYSDLKLKD 233 Query: 293 GKKFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 G LG + + D F L +KG + +I G GY I Sbjct: 234 G-----------------DLGFIGRNNGFLPQEVLDKAFEL-EKGKTSDIIEGEKGYYIV 275 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 V + K + F++ ++++ +Q+ K + + Sbjct: 276 KVIDKKLARGEEFEKSREELKDQLLKQKQNRTYQN 310 Score = 48.8 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 6/149 (4%) Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539 E+V + + +E +K + + E +EGK F ++ L + + Sbjct: 183 EKVRPALIAVNIEGEKKKEARAKIEKALKEL-EEGKAFGEVAAKYSDLKLKDGDLGFIGR 241 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLT 595 N F + + + F IE Y + KV + K+ +E +++ L Sbjct: 242 NNGFLPQEVLDKAFELEKGKTSDI-IEGEKGYYIVKVIDKKLARGEEFEKSREELKDQLL 300 Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + + + K Q + ++D ++ Sbjct: 301 KQKQNRTYQNWLRDTKKQADIEIYDPVLN 329 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 54/150 (36%), Gaps = 10/150 (6%) Query: 349 VIAHVSNIKPSFTV-SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + ++++V+ + + ++ + ++ + L G + E++ + Sbjct: 166 HTYKGVEVSEDEIREAYEKVRPALIAVNIEGEKKKEARAKIEKALKELEEGKAFGEVAAK 225 Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467 + + + F G++ +++L + F + + D + + Y V+ Sbjct: 226 YSDLKLKDGDLGFIGRNNGFLP-------QEVLDKAFELEKGKTSD--IIEGEKGYYIVK 276 Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 + + AR + E+ ++K K Sbjct: 277 VIDKKLARGEEFEKSREELKDQLLKQKQNR 306 >gi|218261354|ref|ZP_03476208.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii DSM 18315] gi|218224075|gb|EEC96725.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii DSM 18315] Length = 470 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 129/375 (34%), Gaps = 34/375 (9%) Query: 262 EKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DIS 311 +K +P+ V ++ N + +AD LKKG F LA+E + Sbjct: 110 DKTVAPDSVKVSHIMLANTGDEAAIKAKADSLLNVLKKGGDFAALAKEYSADQAAEKGGE 169 Query: 312 LGSFSKEYI---PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 LG F++ + ++FS D++ ++ +G I V++ + +V Sbjct: 170 LGWFTEATALRGVNDDFKKAVFS-TPVNDYS-IVKSLYGTHIIKVTDKTANVDK--YKVA 225 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 M ++ +++ Y L +F++ +MD++ K +L + + Sbjct: 226 D---IDMTVSPSTKTYGNIYNELNQFISKNQNMDKLDDAAKEAGYNL--LSNVTVTANDQ 280 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + +I ++ F + D ++ I+ ++P R LE V +K Sbjct: 281 LLGSIKNSRPVIRWAFQNS--KGDISEIFECDDKFVIAAIQGTLPEGYRSLESVTPMLKS 338 Query: 489 DWKTVKTAEEVSSKANQLVLEY-SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 + K K ++V + +K + + + +S + ++ G + Sbjct: 339 ELIAQK-------KGEKIVQDLSAKNLSSVDAYAQAMNSSADSVKFVSFATRRIAGIGVE 391 Query: 548 G-ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-ISYLTQMMNKDLLDS 605 ++ + S + P+ VFKV + I L Sbjct: 392 PKLNAMVSLAQKDQLSAPVAGNNGVYVFKVYEQNKDAKNYDEAAEIKTLDASNAYRFGFQ 451 Query: 606 VIAYLKSQYSVTVHD 620 I L ++ V + Sbjct: 452 AIQSLVNKADVEDNR 466 >gi|22127555|ref|NP_670978.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis KIM 10] gi|45443417|ref|NP_994956.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar Microtus str. 91001] gi|51594986|ref|YP_069177.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pseudotuberculosis IP 32953] gi|108810533|ref|YP_646300.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Nepal516] gi|145600395|ref|YP_001164471.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Pestoides F] gi|150260469|ref|ZP_01917197.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis CA88-4125] gi|153949109|ref|YP_001402397.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pseudotuberculosis IP 31758] gi|165928093|ref|ZP_02223925.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937810|ref|ZP_02226371.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275] gi|166008803|ref|ZP_02229701.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001] gi|166212220|ref|ZP_02238255.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004] gi|167422012|ref|ZP_02313765.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426071|ref|ZP_02317824.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470553|ref|ZP_02335257.1| chaperone SurA [Yersinia pestis FV-1] gi|170025786|ref|YP_001722291.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pseudotuberculosis YPIII] gi|186893987|ref|YP_001871099.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pseudotuberculosis PB1/+] gi|218927692|ref|YP_002345567.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis CO92] gi|229836923|ref|ZP_04457088.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis Pestoides A] gi|229840382|ref|ZP_04460541.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842462|ref|ZP_04462617.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis biovar Orientalis str. India 195] gi|229900721|ref|ZP_04515845.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis Nepal516] gi|270487908|ref|ZP_06204982.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|294502589|ref|YP_003566651.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis Z176003] gi|81691900|sp|Q66EQ7|SURA_YERPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|121956556|sp|Q7CG87|SURA_YERPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|121956562|sp|Q1CMT0|SURA_YERPN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|21960659|gb|AAM87229.1|AE013971_5 survival protein [Yersinia pestis KIM 10] gi|45438286|gb|AAS63833.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis biovar Microtus str. 91001] gi|51588268|emb|CAH19875.1| peptidyl-prolyl cis-trans isomerase, survival protein [Yersinia pseudotuberculosis IP 32953] gi|108774181|gb|ABG16700.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis Nepal516] gi|115346303|emb|CAL19174.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis CO92] gi|145212091|gb|ABP41498.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis Pestoides F] gi|149289877|gb|EDM39954.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis CA88-4125] gi|152960604|gb|ABS48065.1| chaperone SurA [Yersinia pseudotuberculosis IP 31758] gi|165914222|gb|EDR32838.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275] gi|165919954|gb|EDR37255.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016] gi|165992142|gb|EDR44443.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001] gi|166206966|gb|EDR51446.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004] gi|166960149|gb|EDR56170.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167054994|gb|EDR64794.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752320|gb|ACA69838.1| SurA domain [Yersinia pseudotuberculosis YPIII] gi|186697013|gb|ACC87642.1| SurA domain protein [Yersinia pseudotuberculosis PB1/+] gi|229682060|gb|EEO78152.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis Nepal516] gi|229690772|gb|EEO82826.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis biovar Orientalis str. India 195] gi|229696748|gb|EEO86795.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705866|gb|EEO91875.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis Pestoides A] gi|262360619|gb|ACY57340.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis D106004] gi|262364565|gb|ACY61122.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis D182038] gi|270336412|gb|EFA47189.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|294353048|gb|ADE63389.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis Z176003] gi|320016865|gb|ADW00437.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 434 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 140/437 (32%), Gaps = 74/437 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L ++ + A + V +V V S I+ Q + M +Q+ G Sbjct: 6 TLILGLVICA------NTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGQQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V L +IL+ L+ Q + +G+ + IA N+ + Sbjct: 60 VP----DDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTL 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193 SRLA +G++ Y + K + ++V + ++ + S D Sbjct: 112 AQMRSRLAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGD 171 Query: 194 Y-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250 + L++ +P +P+ + Q E + A + + + Sbjct: 172 TELNLSHILIPLPENPTQQQVDQ-AEDLANKLVADIKGGADFGKLAIANSADSQALKGGQ 230 Query: 251 ------DELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADE------------ 285 EL + + + + EI L + + AD+ Sbjct: 231 MGWGKLQELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHI 290 Query: 286 -------------------AFQSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYIP 321 A +K GK F +A+E G ++ LG S + I Sbjct: 291 LLKPSPMMTDEQARAKLEAAAAEIKSGKTSFATIAKEISQDPGSAMQGGELGWASPD-IY 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KKG+ + +H SFG+ + + + + R+ Sbjct: 350 DPAFRDALMKL-KKGEISAPVHSSFGWHLIQLVDTRQVDKTD----AAQKERAYRMLFNR 404 Query: 382 EKVKEDYKRLEEFLALG 398 + +E ++E A Sbjct: 405 KFAEEAQTWMQEQRAAA 421 >gi|46198541|ref|YP_004208.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB27] gi|46196163|gb|AAS80581.1| probable peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB27] Length = 337 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 65/153 (42%), Gaps = 8/153 (5%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++ +S L+A + +Y P + L+ P ++EA+EA L +G+ F ++ Sbjct: 172 ARYRSRLAVSRAALKALWLL-SPEYRHPTLYCARHLLVPTREEAEEARLRLARGEAFAEV 230 Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A ++ G LG + + +++ L + G+ + + FGY + + Sbjct: 231 ARAVSQDPGSKEEGGDLGCAPEGTYV-PAFEEALVRL-RPGEVSGPVRTEFGYHLILLER 288 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + P +E + ++ +A E+++E Sbjct: 289 VVPPGRYPLEEAAPLLEKEVA-DRAWERLEEAL 320 >gi|238782669|ref|ZP_04626699.1| Chaperone surA [Yersinia bercovieri ATCC 43970] gi|238716329|gb|EEQ08311.1| Chaperone surA [Yersinia bercovieri ATCC 43970] Length = 434 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 128/404 (31%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ + Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDSIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITVSDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E+ + + + + + EL + + + + + Sbjct: 196 EELANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAEKLQSANKGDV 255 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLAAAAADIK 315 Query: 292 KGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKTTFANIAKEISQDPGSAVQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 >gi|309791442|ref|ZP_07685948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris trichoides DG6] gi|308226521|gb|EFO80243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris trichoides DG6] Length = 363 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 45/241 (18%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 ++R + V + G S +L + + V+ + + + +A + Sbjct: 114 ITRGEFVRAYQPGDEVSAVLKQLIQVELLLQQAGVEGVTVEASEL-------DAEIAAI- 165 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE------KYFSPEIRT 271 K ++ PE S + +++ E+N + + E Sbjct: 166 ---KSSFGTPEEFT--------AMLAANQIESEEAMRSIIERNMLIDKMVLSHTTMEQVH 214 Query: 272 VEQLVFPN--------QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY 319 ++ + EA+ ++ G F QLA E+ + LG + Sbjct: 215 ARHILLATTAETVDARKAEAEAILAQIQGGADFAQLAAEKSEDPGSKDKGGDLGWAGRGM 274 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 +++FS+ K ++ FG+ I V + PS S D+ M + Sbjct: 275 FVGP-FDEAVFSMQKDEV--RLVQTDFGWHIIQVLD--PSTVRSLDSA--DLLQTMAGQQ 327 Query: 380 A 380 A Sbjct: 328 A 328 Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 28/176 (15%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 A+ V+ + + VG + F+ ++ + G V++ +L Sbjct: 95 QAIGDVTSTEPITQVGDAVITRGEFVRAY---------QPGDEVSA-----------VLK 134 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 L+ L Q G+ + + EIA + F + LA I E Sbjct: 135 QLIQVELLLQQAGVEGVTVEASELDAEIAAI---KSSFGT--PEEFTAMLAANQI---ES 186 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 + ++ R ++ V + + +VD + A Sbjct: 187 EEAMRSIIERNMLIDKMVLSHTTMEQVHARHILLATTAETVDARKAEAEAILAQIQ 242 >gi|330818272|ref|YP_004361977.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli BSR3] gi|327370665|gb|AEA62021.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli BSR3] Length = 451 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 50/411 (12%), Positives = 110/411 (26%), Gaps = 69/411 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V + L ++L+ +V Sbjct: 40 DEVVAVVNNGVITARELDQRVGLISRRLQQQKVPVPPPDE-----LRSQVLNQMVVERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+E V + R N + D + ++L G+ + L Sbjct: 95 LQKAKDDGIEVSDATVQSTLQRLAA----ANGMTVDQYRAQLEALGVPWSTFSGDARNEL 150 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195 + + V ++ R N Q R +D Sbjct: 151 ILSRLREKEVDSKITVTDAEVASYIASQRGPNSGSQQDVRLEHIFVAAPQNAPQDQIDIA 210 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAPEYKRISYILFDVHEKEKK 245 + A S A + + ++AP + + + Sbjct: 211 QKKADGLLKQALASGADFEKLARNSSEAKDAKTGGDLGFKAPGSLPADVVQAVSQLRPGQ 270 Query: 246 IEISNDELQAEYEKNKEKYFSPE-----------IRTVEQLVF-----PNQKEADE---- 285 + + + +E + P V ++ ++ +A + Sbjct: 271 VSPNLIRVPDGFEIVRLVDRRPASGTVGASPKIVQTHVRHILLRVGEGKSESQARQQLID 330 Query: 286 AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++ G F A + G + LG S ++ L + G + + Sbjct: 331 IRNQIEAGGDFANFARTYSQDGSASQGGDLGWISPGETV-PEFERAMSQL-QDGQISQPV 388 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 389 RTEYGYHLIQVLGRRDAEG-SVQKQMDIARQAIGQRKAEQAYADWLRELRD 438 Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 107/309 (34%), Gaps = 30/309 (9%) Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--DVSLADSIFSLAKKGDFTPVIHGSFG 347 +KK +F + +S +S+ + + + +LAD + ++ G T Sbjct: 1 MKKSLRFAAIVSGLAAVMSLLSVTPAAAQALGSSGATLADEVVAVVNNGVITARELDQRV 60 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS-EKVKEDYKRLEEF--------LALG 398 +I+ + E++ + NQM + + +K K+D + + LA Sbjct: 61 GLISRRLQQQKVPVPPPDELRSQVLNQMVVERIQLQKAKDDGIEVSDATVQSTLQRLAAA 120 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 M R ++ ++ +P F+G D + + + + ++++ ++ D ++ Sbjct: 121 NGMTVDQYRAQLEALGVPWSTFSG-DARNELILSRLREKEVDSKITVTDAEVASYIASQR 179 Query: 459 PD--GSYMWVQIKESIPARDR--KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 GS V+++ A + +++ + KA+ L+ + G Sbjct: 180 GPNSGSQQDVRLEHIFVAAPQNAPQDQI--------------DIAQKKADGLLKQALASG 225 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 +F + +N + + D + V V I + + Sbjct: 226 ADFEKLARNSSEAKDAKTGGDLGFKAPGSLPADVVQAVSQLRPGQVSPNLIRVPDGFEIV 285 Query: 575 KVTNSKVGP 583 ++ + + Sbjct: 286 RLVDRRPAS 294 >gi|332160260|ref|YP_004296837.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664490|gb|ADZ41134.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 434 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E + + + + EL + + + + + Sbjct: 196 EDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSASKGDV 255 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKANFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 >gi|295675486|ref|YP_003604010.1| SurA domain protein [Burkholderia sp. CCGE1002] gi|295435329|gb|ADG14499.1| SurA domain protein [Burkholderia sp. CCGE1002] Length = 477 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 49/436 (11%), Positives = 122/436 (27%), Gaps = 74/436 (16%) Query: 20 VLFVPFL-IWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 V F+ + + + TV V + ++Q+ V Sbjct: 40 VAAASFVPVASVQAQALGGNSGQTVDTIAAVVNNGVITQRELDERVGLIAHRLNQQNAPV 99 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 +++ L +++L +V Q ++ G+ D V + R + N Sbjct: 100 PPTDQ-----LRQQVLTQMVLERIQLQKAKEDGINIDDAAVQRTLERL----AQANNMPL 150 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG----------------------- 171 ++ +R+ +G+ + + L+ + + V Sbjct: 151 AMYRARIEAQGVPWATFSNDARTELTLSRLREKEVDSKITVTDAEVANYIASQRGPGAGQ 210 Query: 172 --------MRPSNLLLDQAKRFYFENRSVDYIVLNN---RHVPAIADPSNAVLTQWFEKY 220 + S L + ++ +A ++ Sbjct: 211 TSDLHMQHIFVSAPLNAPETDIEAAQKKAQGLLAEAKGGADFGKLAKANSQAPDASKNGG 270 Query: 221 KDNYRAP-----EYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPE-----I 269 + AP E+ + + L I ++ E+ E+ + S + Sbjct: 271 DLGFLAPSKLPPEFVKAASTLRPGEISPDLIRTNDGFEIVRLVERRAGQGTSADAPKLVQ 330 Query: 270 RTVEQLVF---------PNQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSK 317 V ++ +++ + + G F + A + G S LG S Sbjct: 331 THVRHILLRVGDGQSEPQARQKLIDIRNQIAAGGDFAKFAHTYSQDGSSSQGGDLGWISP 390 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 ++ +L + G + + +GY + V + + S + + Sbjct: 391 GETV-PEFERAMNAL-QDGQISEPVRSEYGYHLIQVLGRRDAEG-SIAQQMDLARQAIGQ 447 Query: 378 TKASEKVKEDYKRLEE 393 KA + + + L + Sbjct: 448 RKAEQAYADWLRELRD 463 >gi|269137960|ref|YP_003294660.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda EIB202] gi|267983620|gb|ACY83449.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda EIB202] gi|304558008|gb|ADM40672.1| Survival protein SurA precursor [Edwardsiella tarda FL6-60] Length = 435 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 55/402 (13%), Positives = 115/402 (28%), Gaps = 62/402 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S K Q + + + L +IL+ L+ Sbjct: 26 DKVVAIVDNGVVLESDVDGMMKSVKLNAQQ-----ADQQLPDNATLRHQILERLIMDNVQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +GLE + I + N S SRLA +G++ K Y K + Sbjct: 81 LQMAKRMGLEISDSELDNAINGI----AQQNHISMQQLRSRLAADGLDYKTYRAQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSN------- 210 ++V + +D + S + V L++ +P +P+ Sbjct: 137 LISEVRNNEVRRRVTILPQEVDALAKQIGSQNSGETAVNLSHILIPLPENPTQQQVSEAQ 196 Query: 211 ----------------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL- 253 A L + + E E ++ Sbjct: 197 QQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIV 256 Query: 254 --------QAEYEKNKEKYFSPE----IRTVEQLVF---------PNQKEADEAFQSLKK 292 N + ++ + + + + Sbjct: 257 GPIRSGVGFHILRVNDLRGDQANVSVTEVHARHILLRTSPVMSDAQARAKLEALSAQITS 316 Query: 293 GK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 GK F Q A+E + G ++ + D + D++ L KG+ + +H +FG+ Sbjct: 317 GKITFEQAAKEYSQDPGSAQKGGDLGWAVPSMYDPAFRDALMKL-NKGEISQPVHSNFGW 375 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + + + + K+ + K +E+ + + Sbjct: 376 HLIQLLGTR-QVDRTDEAQKERAYRMLFNRKFAEEAQTWLQE 416 Score = 63.9 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 94/304 (30%), Gaps = 32/304 (10%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ++ + G+ S+ LD A + + L +R D Sbjct: 73 RLIMDNVQLQMAKRMGLEISDSELDNAINGIAQQNHISMQQLRSRLAADGLD-------- 124 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 YRA K + +E +++ I E+ A ++ + + + Sbjct: 125 -----YKTYRAQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQIGSQNSGETAVNLSHI 179 Query: 276 VFPNQK------------EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322 + P + +A+ Q L +G F +LA + G + + Sbjct: 180 LIPLPENPTQQQVSEAQQQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQEL 239 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKA 380 +L AKKGD I G+ I V++++ VS EV I + + Sbjct: 240 PTLFAEALQSAKKGDIVGPIRSGVGFHILRVNDLRGDQANVSVTEVHARHILLRTSPVMS 299 Query: 381 SEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + + + L + G + ++ ++ S D G P Sbjct: 300 DAQARAKLEALSAQITSGKITFEQAAKEY---SQDPGSAQKGGDLGWAVPSMYDPAFRDA 356 Query: 440 LFRV 443 L ++ Sbjct: 357 LMKL 360 >gi|238795196|ref|ZP_04638783.1| Chaperone surA [Yersinia intermedia ATCC 29909] gi|238725483|gb|EEQ17050.1| Chaperone surA [Yersinia intermedia ATCC 29909] Length = 434 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 126/404 (31%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQSGQQVP----DDATLRHQILERLIMDNIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITINDEALDKAIADIAA----QNRMTTAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E+ + + + + EL + + + + + Sbjct: 196 EELATKLVSDIKSGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255 Query: 269 ----------------------------IRTVEQLVFP-----NQKEADEAFQ----SLK 291 ++ +A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQARTKLAAAAADIK 315 Query: 292 KGKK-FIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKSSFATIAKEISQDPGSAVQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 99/312 (31%), Gaps = 35/312 (11%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 D YR K + +E ++I I E+++ ++ + + ++ P Sbjct: 124 NYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 ++ A + +K G F +LA + G + + SL Sbjct: 184 PENPSQQQVDQAEELATKLVSDIKSGADFGKLAIANSADSQALKGGQMGWGKLQELPSLF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKK-----DIANQMRITKA 380 A KGD I G+ I V++I+ + T+S EV + M +A Sbjct: 244 AERLQSANKGDVVGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQA 303 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 K+ ++ + +S I++ +S D G P L Sbjct: 304 RTKLAAAAADIK---SGKSSFATIAKE---ISQDPGSAVQGGDLGWASPDIYDPAFRDAL 357 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEE 498 ++ + ++ P S + + + R D+ + + K AEE Sbjct: 358 MKLQKGE--------ISAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEE 409 Query: 499 VSSKANQLVLEY 510 + + Sbjct: 410 AQTWMQEQRAAA 421 >gi|108810078|ref|YP_653994.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Antiqua] gi|167401555|ref|ZP_02307049.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|121956548|sp|Q1C0H3|SURA_YERPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|108781991|gb|ABG16049.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia pestis Antiqua] gi|167048937|gb|EDR60345.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 434 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 140/437 (32%), Gaps = 74/437 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L ++ + A + V +V V S I+ Q + M +Q+ G Sbjct: 6 TLILGLVICA------NTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGLQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V L +IL+ L+ Q + +G+ + IA N+ + Sbjct: 60 VP----DDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTL 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193 SRLA +G++ Y + K + ++V + ++ + S D Sbjct: 112 AQMRSRLAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGD 171 Query: 194 Y-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250 + L++ +P +P+ + Q E + A + + + Sbjct: 172 TELNLSHILIPLPENPTQQQVDQ-AEDLANKLVADIKGGADFGKLAIANSADSQALKGGQ 230 Query: 251 ------DELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADE------------ 285 EL + + + + EI L + + AD+ Sbjct: 231 MGWGKLQELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHI 290 Query: 286 -------------------AFQSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYIP 321 A +K GK F +A+E G ++ LG S + I Sbjct: 291 LLKPSPMMTDEQARAKLEAAAAEIKSGKTSFATIAKEISQDPGSAMQGGELGWASPD-IY 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KKG+ + +H SFG+ + + + + R+ Sbjct: 350 DPAFRDALMKL-KKGEISAPVHSSFGWHLIQLVDTRQVDKTD----AAQKERAYRMLFNR 404 Query: 382 EKVKEDYKRLEEFLALG 398 + +E ++E A Sbjct: 405 KFAEEAQTWMQEQRAAA 421 >gi|119504985|ref|ZP_01627062.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma proteobacterium HTCC2080] gi|119459271|gb|EAW40369.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma proteobacterium HTCC2080] Length = 436 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 124/410 (30%), Gaps = 72/410 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQ-ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 V V + + + + ++I + AR LD L+ + Sbjct: 42 DKVVAIVDDDIILATELQERLLLIQRNIEQRQIDAPPDEVLARE------TLDRLILESI 95 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 Q G+ ++ +AR + ++ + F + + G + Y+ + Sbjct: 96 QLQLANRYGVRIPDAQLDAAMARMAS----GSNYTLEQFRAAVEANG---QSYLA-MREE 147 Query: 159 LSRTDVVGMFVGGMRPSNLLL--DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + R ++ G N+ + + F + R + A+ + S Sbjct: 148 IRREMMIQRVQQGNVSRNIEISEQEVDNFLSTEAGAEMTQPEFRVIQALVEVSKKDSKAD 207 Query: 217 FEKYKDNYRA------------PEYKRIS-----------YILFDVHEKEKKIEISNDEL 253 +K K+++ PE + + D I + ++ Sbjct: 208 RQK-KEDFVDGILASILAGKDFPEAVSVIEPYVFKGGDLGWKKLDAIPSMFAAVIPSLKV 266 Query: 254 QA-------------EYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK--- 292 + + E V ++ ++ A L++ Sbjct: 267 GDTAKVASGAGFHLVYLADERGRERLVEQTEVRHILIKPTEVLDEDAAIALATELRQRAM 326 Query: 293 -GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA+E + LG S + D+ + + G+ + + FG Sbjct: 327 DGEDFGALAKEYSDDIGSAQEGGELGWTSPGQMV--PEFDATMATTEVGEISYPVKSQFG 384 Query: 348 YVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYKRLEEFLA 396 + I V+ + +++ ++ + + K E+++ +++ E Sbjct: 385 WHILEVTGRREENIA--EQMRRQQVMGYLHDQKYDEELEAWLRKIREEAF 432 >gi|262198048|ref|YP_003269257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum DSM 14365] gi|262081395|gb|ACY17364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum DSM 14365] Length = 342 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 13/222 (5%) Query: 217 FEKYKDNYRAPEYKRI-SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 F+K + R + I + ++ K +I +EL+A ++++KE+Y P+ + Sbjct: 112 FDKDPEVVRTLKQVMIQKLVKEQFTDELKPEDIPEEELRAYFDEHKEEYQRPDQVRAAAI 171 Query: 276 VFPNQKEADEAFQSLKKGK-----KFIQLAEEQGKS----LSDISLGSFSKEYI-PDVSL 325 V ++ AD+ K F L K S LG F K + Sbjct: 172 VLDDKASADKLLSEAKAAAEKNHVAFRNLVTAHSKDGDSKNSGGDLGFFDKSSSDVPAPV 231 Query: 326 ADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 ++ F+L + VI G + I ++ + + + SF +VK+ + N++ K + Sbjct: 232 IEAAFALDSN-QVSDVIDAGNGRFYIIKITGRRKAMSKSFDDVKRQLLNRVYRDKRVKMQ 290 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 ++ L+E + + + +S+ E + ++ G+ Sbjct: 291 EDFVAALKEKATINYNEENLSKVEIDTGSGMTDLNQHGQLPS 332 Score = 43.8 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 6/162 (3%) Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528 E R ++V +A+++ S+A + +N G S Sbjct: 154 DEHKEEYQRP-DQVRAAAIV-LDDKASADKLLSEAKAAAEKNHVAFRNLVTAHSKDGDSK 211 Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588 + + D + I F+ V + + K+T + + D Sbjct: 212 NSGGDLGFFDKSSSDVPAPVIEAAFALDSNQVSDVIDAGNGRFYIIKITGRRKAMSKSFD 271 Query: 589 KFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626 L + +D + + +A LK + ++ ++ + + Sbjct: 272 DVKRQLLNRVYRDKRVKMQEDFVAALKEKATINYNEENLSKV 313 >gi|110346927|ref|YP_665745.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp. BNC1] gi|110283038|gb|ABG61098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp. BNC1] Length = 290 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 88/246 (35%), Gaps = 23/246 (9%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 D L+ + + G P + E R V A+ ++ Sbjct: 44 QDITADDLAIAEQMYSQQLGQMPEDARRSMLVDALIELRIV-------AEAARKANVADQ 96 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 +++ + A + + ++++ ++A Y++ K R Sbjct: 97 EA---YKRQLAFFEAQSLRSLFLEQRVAAA------VTDEAVKAAYDERVGKIPPVLERR 147 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLAD 327 + ++ ++ +A E ++LK GK F +LA+E+ + LG ++ + D Sbjct: 148 LRHILLRSESDAVEVIEALKGGKAFAELAQERSADEVSKVKGGDLGFVAEGQVV--PEVD 205 Query: 328 SIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + + + G+FT + +FG+ + V + +F+ V I + T+ + E Sbjct: 206 AAAAKLQPGEFTQSPVASAFGFHVVLVEETRNRPPPAFEAVAPQIRQALEATEERRIISE 265 Query: 387 DYKRLE 392 + Sbjct: 266 LRAAAK 271 Score = 38.0 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 1/112 (0%) Query: 507 VLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565 V+E K GK F ++ + A + + + + P+ Sbjct: 162 VIEALKGGKAFAELAQERSADEVSKVKGGDLGFVAEGQVVPEVDAAAAKLQPGEFTQSPV 221 Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617 + + V V ++ P + + Q + +I+ L++ V Sbjct: 222 ASAFGFHVVLVEETRNRPPPAFEAVAPQIRQALEATEERRIISELRAAAKVE 273 >gi|206581089|ref|YP_002240483.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae 342] gi|288937183|ref|YP_003441242.1| peptidylprolyl isomerase [Klebsiella variicola At-22] gi|290512604|ref|ZP_06551970.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55] gi|206570147|gb|ACI11923.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae 342] gi|288891892|gb|ADC60210.1| Peptidylprolyl isomerase [Klebsiella variicola At-22] gi|289774945|gb|EFD82947.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55] gi|294488615|gb|ADE88150.1| peptidyl-prolyl cis-trans isomerase [Pantoea agglomerans] Length = 428 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 114/371 (30%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA EGIN Y K + ++V + ++ + + Sbjct: 110 TMDQMRSRLAYEGINYNTYRSQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQND 169 Query: 192 VDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + L++ +P +P+ + ++ + ++ + + + Sbjct: 170 ASTELNLSHILIPLAENPTADEVAA-AQEQANAIVEQARNGANFGKLAITYSADQQALKG 228 Query: 251 --------DELQAEYEKNKEKYFSPE-----------------------------IRTVE 273 EL + + + Sbjct: 229 GQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHAR 288 Query: 274 QLVFP---------NQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEY 319 ++ Q + ++ +K GK F + A+ + G + LG + + Sbjct: 289 HILLKPSPIMNDAQAQAKLEQIAADIKSGKTTFAKAAKAFSEDPGSANQGGDLGWATPD- 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L KG + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALMRL-NKGQTSGPVHSSFGWHLIELLDSR-QVDRTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 55/382 (14%), Positives = 119/382 (31%), Gaps = 48/382 (12%) Query: 149 KEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 + L +V G++ S+ LDQA ++ Sbjct: 64 ATLRHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAI----------------ANIAKQN 107 Query: 207 DPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 + + + + + YR+ K + +E ++I + E++A ++ ++ Sbjct: 108 NMTMDQMRSRLAYEGINYNTYRSQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQ 167 Query: 264 YFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 + + ++ P Q++A+ + + G F +LA + Sbjct: 168 NDASTELNLSHILIPLAENPTADEVAAAQEQANAIVEQARNGANFGKLAITYSADQQALK 227 Query: 312 LGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKK 369 G I + + S AKKGD I G+ I V++++ +S EV Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHA 287 Query: 370 D-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 I + + + +++ + G + ++ K S D + G Sbjct: 288 RHILLKPSPIMNDAQAQAKLEQIAADIKSGKT--TFAKAAKAFSEDPGSANQGGDLGWAT 345 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDV 486 P L R+ + P S + E + +R DR Sbjct: 346 PDIFDPAFRDALMRL--------NKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRA 397 Query: 487 KKDWKTVKTAEEVSSKANQLVL 508 + K +EE ++ + Sbjct: 398 YRMLMNRKFSEEAATWMQEQRA 419 >gi|146281122|ref|YP_001171275.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri A1501] gi|145569327|gb|ABP78433.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri A1501] Length = 451 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 47/408 (11%), Positives = 122/408 (29%), Gaps = 64/408 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ I ++ ++ L +++L+ L++ Sbjct: 52 DRVVAIVDNDVIMQSQLNQRMREVQQTIEKRGADAPPTDV-----LQQQVLERLITENLQ 106 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ + + + N S + F LAR+G++ + + + + Sbjct: 107 LQIGERSGIRISDEELNQAMGTI----AQRNNMSLEQFREALARDGLSLETAREQIRREM 162 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVD--------YIVLNNRHVPAIADPSN 210 + V ++ SN + + I + A + Sbjct: 163 VISRVRQRRVAERIQVSNQEVQNFLASDLGKLQLSEEYHLANILIAVPEGADSATIQAAE 222 Query: 211 AVLTQWFEKYKD--NYRAPEYKRI---------SYILFDVHEKEKKIEISNDELQ----- 254 +++ + ++ R + + EL Sbjct: 223 RTAMDTYQQLQQGADFARLAVSRSGSENALEGGDMGWRKAAQLPPPFDTEVRELSVGEVT 282 Query: 255 ------------AEYEKNKEKYFSPEIRTVEQLVFP-----NQKEA----DEAFQSLKKG 293 +K + + V ++ + +EA + G Sbjct: 283 QPVRTPPGFIMLKLLDKRGGETQVRDEVHVRHILIKPSAIRSDEEARLLVQRLRDRINAG 342 Query: 294 KKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F QLA E+ G +L+ L + + + + G+ + V +G+ Sbjct: 343 EDFAQLARSFSEDPGSALNGGDLNWIDPASLV-PEFRE-VMANTPSGELSQVFKSPYGWH 400 Query: 350 IAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 I V + + ++ ++ A + +R K E+++ +++ + Sbjct: 401 ILEVLGRRATDAS--EQFREQQALSLLRNRKYDEELQAWLRQIRDEAY 446 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 18/195 (9%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-- 286 + + ++I++SN E+Q + K E + ++ + AD A Sbjct: 159 RREMVISRVRQRRVAERIQVSNQEVQNFLASDLGKLQLSEEYHLANILIAVPEGADSATI 218 Query: 287 ----------FQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333 +Q L++G F +LA + +L +G +P + L+ Sbjct: 219 QAAERTAMDTYQQLQQGADFARLAVSRSGSENALEGGDMGWRKAAQLP-PPFDTEVRELS 277 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLE 392 G+ T + G+++ + + + T EV I + ++ E+ + +RL Sbjct: 278 -VGEVTQPVRTPPGFIMLKLLDKRGGETQVRDEVHVRHILIKPSAIRSDEEARLLVQRLR 336 Query: 393 EFLALGTSMDEISRR 407 + + G +++R Sbjct: 337 DRINAGEDFAQLARS 351 >gi|329847914|ref|ZP_08262942.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19] gi|328842977|gb|EGF92546.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19] Length = 348 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 76/222 (34%), Gaps = 8/222 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +I ++ Y++ + E ++ +++EAD ++++ G F +A E+ Sbjct: 129 DIDEKSIKEHYDEQVKLSKQSEEIRTRVILLKSKEEADNVMKAVQGGSLFEAMAMERSID 188 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S +G F+ + +P + S AK GD + G+ I V + +P Sbjct: 189 QTTRFSGGDMGYFTTDIMPQAY--KGVLSTAKIGDTVGPVQAEGGWAILRVEDRRPEQLP 246 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYK--RLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 S +E + I + + + ++ K ++E+ + D + Sbjct: 247 SLEEERPIIMRYLIYNQVAGLLESLRKGAKVEKLIEKSALSDRAGQEPANAPAHAVEDSA 306 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 + + A + + V + + G Sbjct: 307 SASEEASASTPATGKGKPVAMSVPMGEAKPGSSKLIGTARGG 348 >gi|124516328|gb|EAY57836.1| protein of unknown function [Leptospirillum rubarum] Length = 238 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 32/237 (13%) Query: 1 MLEIIRKAS----RTWVAKIFL--VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54 MLE IRK + + + L + V WG S G V + + + Sbjct: 1 MLEWIRKVAVERPKVLGTLMILVGAIFVVSMGWWGFSAYKSGKPG--IVARINGTPLYAT 58 Query: 55 SFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113 F ++ + + + + + +L N++ + L Sbjct: 59 EFSRDYEIMKNNYQRLLLNGALGKKILTELNFPGLVLRNMIFRQLWIDEANHLHLIVPDA 118 Query: 114 RVWGEIARSPLFHGKDNK-FSHDVFVSRLAREGINEKEYIDHYTKMLSRTD---VVGMFV 169 V E++R P F + FS ++ L + K++ + L +V Sbjct: 119 VVVSEVSRIPFFQEGNPPVFSSKLYTQFLLETHQSAKDFEQSIREDLLVQRAQVLVRAIQ 178 Query: 170 GGMRPSN-------------------LLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 P++ L + + F + + + ++ ++ Sbjct: 179 TPAAPASPTDEKTAAGLDDWQKKRLALQEETLQSFQMQLENRSNVKIDQEAFKKLSK 235 >gi|238797487|ref|ZP_04640985.1| Chaperone surA [Yersinia mollaretii ATCC 43969] gi|238718628|gb|EEQ10446.1| Chaperone surA [Yersinia mollaretii ATCC 43969] Length = 434 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 127/404 (31%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITVSDEALDKAIADIAA----QNRMTTAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSADAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E+ + + + + + EL + + + + + Sbjct: 196 EELANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSANKGDV 255 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKATFANIAKEISQDPGSAVQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 >gi|152984414|ref|YP_001350152.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PA7] gi|150959572|gb|ABR81597.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PA7] Length = 314 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQL 299 S+ +L YE NK + P + V Q+ +K A E ++ G F +L Sbjct: 140 SDADLHDAYEANKAQLGVPALYRVSQIFIATATAGGPAEARKRAQELYRQAATG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G+ + I G G+ + ++ Sbjct: 199 ARKYSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGEVSEPIQGGNGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S EV++ + +R + + K L Sbjct: 259 RDPRLASLDEVRERLRASLRAQRQEQIAKAYLDGL 293 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + ++ + L A G E++R+ D P G D+ G + A + Sbjct: 178 EARKRAQELYRQAATGD-FAELARKYS----DDPQTARNGGDIGG--LLAQAQLLPAIRP 230 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + + +G + V++ E R L+EV ++ + + + + Sbjct: 231 ALERLKVGEVSEPIQGGNG-FHLVKLTERRDPRLASLDEVRERLRASLRAQRQEQIAKAY 289 Query: 503 ANQLV 507 + LV Sbjct: 290 LDGLV 294 >gi|330505263|ref|YP_004382132.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] gi|328919549|gb|AEB60380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] Length = 432 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 47/413 (11%), Positives = 133/413 (32%), Gaps = 64/413 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S ++ I ++ G + E L +++L+ L+ Sbjct: 33 DRVVAIVDNDVVMQSQLDARLREVQQTIDKR-GGALPPEHV----LSQQVLERLIIENIQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ + + + N S + F LAR+G++ + D + + Sbjct: 88 LQIGDRSGIRITDEELNQAMGTI----AQRNGMSLEQFRDALARDGLSYADARDQVRREM 143 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAK-------RFYFENRSVDYIV-LNNRHVPAIADPSN 210 + V ++ ++ + + E R + ++ ++ + ++ Sbjct: 144 IISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEIQAAD 203 Query: 211 AVLTQWFEKYKD--NY-------------------------RAPEYKRISYILFDVHEKE 243 + +++ + ++ + P + E Sbjct: 204 RQAQELYQQLQQGADFGQLAVSRSASENALEGGEMGWRKAGQLPPPFDSMISQLNPGEAT 263 Query: 244 KKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 + + + EK + V ++ ++ + +Q + G Sbjct: 264 EPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSEEETRRLVERLYQRIVDG 323 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +LA+ + G +L+ L + + + + G+ + +G+ Sbjct: 324 EDFAELAKSFSEDPGSALNGGDLNWIDPNALV-PEFRE-VMNNTASGELSKPFKSPYGWH 381 Query: 350 IAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + V + + F+E + AN +R K E+++ +++ + + T + Sbjct: 382 VLQVMGRRATDSSAQFRE--QQAANLLRNRKYDEELQAWLRQIRDEAYVETKL 432 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 25/198 (12%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------- 278 + + ++I++++ E+Q + K E + ++ P Sbjct: 140 RREMIISRVRQRRVAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEI 199 Query: 279 --NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333 ++A E +Q L++G F QLA + +L +G +P DS+ S Sbjct: 200 QAADRQAQELYQQLQQGADFGQLAVSRSASENALEGGEMGWRKAGQLPPP--FDSMISQL 257 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK--------KDIANQMRITKASEKVK 385 G+ T + G++I + + T EV +I ++ + E++ Sbjct: 258 NPGEATEPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSEEETRRLVERLY 317 Query: 386 EDYKRLEEFLALGTSMDE 403 + E+F L S E Sbjct: 318 QRIVDGEDFAELAKSFSE 335 >gi|288941221|ref|YP_003443461.1| nitrogen fixation protein NifM [Allochromatium vinosum DSM 180] gi|288896593|gb|ADC62429.1| nitrogen fixation protein NifM [Allochromatium vinosum DSM 180] Length = 290 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 18/170 (10%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--------PNQ 280 + + + + +S +E++ + ++ E++ PE R ++ + Sbjct: 109 RRELIFDAVMTRVGARAEAVSEEEVRRFHAEHPERFQIPERRAARHILITINADYAENGR 168 Query: 281 KEADEAFQSLKKGKK-----FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332 + A ++L + F QLA +L D LG+ + + L ++F+L Sbjct: 169 EAARARIEALAADAQARPDAFGQLARRHSECPTALEDGRLGTLPRGRLY-PELDAALFAL 227 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 G + V+ G+ + +I+P T+ F++ + I +++ + + Sbjct: 228 -DAGQVSGVLESEIGFHLLWCEHIEPGRTIDFEQARPHIRERLQSQRRHD 276 >gi|162420091|ref|YP_001605345.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Angola] gi|162352906|gb|ABX86854.1| chaperone SurA [Yersinia pestis Angola] Length = 434 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 140/437 (32%), Gaps = 74/437 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + L ++ + A + V +V V S I+ Q + M +Q+ G Sbjct: 6 TLILGLVICA------NTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGQQ 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 V L +IL+ L+ Q + +G+ + IA N+ + Sbjct: 60 VP----DDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTL 111 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193 SRLA +G++ Y + K + ++V + ++ + S D Sbjct: 112 AQMRSRLAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGD 171 Query: 194 Y-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-- 250 + L++ +P +P+ + Q E + A + + + Sbjct: 172 TELNLSHILIPLPENPTQQQVDQ-AEDLANKLVADIKGGADFGKLAIANSADSQALKGGQ 230 Query: 251 ------DELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADE------------ 285 EL + + + + EI L + + AD+ Sbjct: 231 MGWGKLQELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHI 290 Query: 286 -------------------AFQSLKKGKK-FIQLAEE----QGKSLSDISLGSFSKEYIP 321 A +K GK F +A+E G ++ LG S + I Sbjct: 291 LLKPSPMMTDEQARAKLEAAAAEIKSGKTNFATIAKEISQDPGSAMQGGELGWASPD-IY 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KKG+ + +H SFG+ + + + + R+ Sbjct: 350 DPAFRDALMKL-KKGEISAPVHSSFGWHLIQLVDTRQVDKTD----AAQKERAYRMLFNR 404 Query: 382 EKVKEDYKRLEEFLALG 398 + +E ++E A Sbjct: 405 KFAEEAQTWMQEQRAAA 421 >gi|262044914|ref|ZP_06017956.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037641|gb|EEW38870.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 428 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 117/371 (31%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISEDQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA EGIN Y + K + ++V + ++ + + Sbjct: 110 TLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQND 169 Query: 192 VDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + L++ +P +P++ + ++ ++ ++ + + + Sbjct: 170 ASTELNLSHILIPLPENPTSDEVAA-AQEQANSIVEQARNGANFGKLAITYSADQQALKG 228 Query: 251 --------DELQAEYEKNKEKYFSPE-----------------------------IRTVE 273 EL + + + Sbjct: 229 GQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHAR 288 Query: 274 QLVFP---------NQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEY 319 ++ Q + ++ +K GK F Q A+ + G + LG + + Sbjct: 289 HILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPD- 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L KG + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALMRL-NKGQTSGPVHSSFGWHLIELLDSR-QVDRTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 98/306 (32%), Gaps = 27/306 (8%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I + E++A ++ ++ + + ++ P Sbjct: 124 NYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ +S EV I + + Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++ + G ++ K S D + G P L R+ Sbjct: 304 QAKLEQIAAEIKSGK--ITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRL- 360 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + P S + E + +R DR + K +EE ++ Sbjct: 361 -------NKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATW 413 Query: 503 ANQLVL 508 + Sbjct: 414 MQEQRA 419 >gi|123440995|ref|YP_001004984.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087956|emb|CAL10744.1| survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607170|emb|CBY28668.1| survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [Yersinia enterocolitica subsp. palearctica Y11] Length = 434 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 26 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 81 LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 136 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 137 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 195 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E + + + + EL + + + + + Sbjct: 196 EDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSASKGDV 255 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 256 VGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 315 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 316 SGKANFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 373 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 374 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 416 >gi|226942334|ref|YP_002797407.1| nitrogen fixation cis-trans peptidyl prolyl isomerase, NifM [Azotobacter vinelandii DJ] gi|226717261|gb|ACO76432.1| Nitrogen fixation cis-trans peptidyl prolyl isomerase, NifM [Azotobacter vinelandii DJ] Length = 293 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 102/270 (37%), Gaps = 48/270 (17%) Query: 175 SNLLLDQAKRFYFENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----- 228 S L QA R R + D ++ + + + PS L + + Y +PE Sbjct: 31 SEEQLQQADRIIGRQRHIEDAVLRSPDAIGVVIPPS--QLEEAWAHIASRYESPEALQQA 88 Query: 229 ----------YKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVE 273 + + V + EIS+ ++ Y + E++ P Sbjct: 89 LDAQALDAAGMRAMLARELRVEAVLDCVCAGLPEISDTDVSLYYFNHAEQFKVPAQHKAR 148 Query: 274 QLVF--------PNQKEA----DEAFQSLK-KGKKFIQLAEEQG---KSLSDISLGSFSK 317 ++ ++ A + + L+ K ++F + A + ++ LG Sbjct: 149 HILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGLLGEVVP 208 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--QM 375 + L +F +A+ G+ +PV+ G+ + + ++ P+ ++ +E+ + + Q+ Sbjct: 209 GTLY-PELDACLFQMAR-GELSPVLESPIGFHVLYCESVSPARQLTLEEILPRLRDRLQL 266 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEIS 405 R KA ++ K LE L +++ ++ Sbjct: 267 RQRKAYQR-----KWLESLLQQNATLENLA 291 >gi|317503245|ref|ZP_07961302.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606] gi|315665633|gb|EFV05243.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606] Length = 713 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 87/722 (12%), Positives = 204/722 (28%), Gaps = 127/722 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR S+ + + + F+ +A S + V V +K+ + F Sbjct: 4 LGKIR--SKGALLMGIIGLGLFAFI---AEEAFRSCESTRNNERQQVGEVLGEKISVNDF 58 Query: 57 INSWKQELGMI-SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + + ++ Q+ +N E+ + + + V +++ +++GL + Sbjct: 59 QKLFDEYSEVVKMQQGADALNDEQLNQ--VKDMVWNTFVQTKLIEKEAKELGLRVTDTEM 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYI-------- 152 + ++P + + +F + LA ++Y Sbjct: 117 QNVLREGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDAQRTANPQMAQQYETIYKYWTF 176 Query: 153 --DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV------------DYIVLN 198 + L + + + + A + + D + ++ Sbjct: 177 IEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFNEENQESQIQLAAFPYTSIQDDKVKIS 236 Query: 199 NRHVPAI-----------------------ADPSNAV---LTQWFEKYKDNYRAPE---- 228 + + A PS L + F Y + A E Sbjct: 237 DSDLKAKYDELKPRFRQYVESRDIKYVDVQVTPSATDRSALQKDFAGYAKDLAAAEDPST 296 Query: 229 -----YKRISYILFDVHEKEKKIEIS---------------NDELQAEYEKNK--EKYFS 266 ++Y+ V + +I+ D+L + K Sbjct: 297 VVRKSSSLVNYLGLPVGKTAFPADIAAKLDSMAVGQTSGVIEDKLDNTLNVIRLISKQQL 356 Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ K AD + +LK G F LA++ G++ + ++ + Sbjct: 357 PDSVQYRQIQVGGASAAAAHKSADSIYAALKAGADFEALAKKYGQTGQKAWMTTQQYQSA 416 Query: 319 YIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 D + I +L + + G +I V + K V I + Sbjct: 417 PSMDNDTKNYINNLNTMAVNETKNIPLSQ-GNIIVQVLDRKGMTEK---YVAAVIKKNIV 472 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 +++ + Y + F++ + +I + + +A I Sbjct: 473 F--SNDTYSKAYNKFSSFVSANQTAADIEKNAAKSGYRVQEAKDV--TTAQHYLANIHGT 528 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVK 494 L +F + + + + P R L+ +V VK + K Sbjct: 529 RDALKWLFDAKQGDVSPMYSCGDNDHLLVAILTKINPVGYRSLDDAQVKDMVKAEVMKDK 588 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 AE + +K + V + + + + + V++ Sbjct: 589 KAEMLMNKV-KGVNSLAAAKAKGAKVAEVNQVTFAAPVFVTLTGASEPALS----GAVYA 643 Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 P++ +F+V N + P + D + + + + L Sbjct: 644 TAKGKFSTNPVKGNAGVYMFQVVNKTMRPGKFDDNGMEQKIRQKIMQYAGNFMNELYINA 703 Query: 615 SV 616 V Sbjct: 704 KV 705 >gi|160901465|ref|YP_001567047.1| SurA domain-containing protein [Delftia acidovorans SPH-1] gi|160367049|gb|ABX38662.1| SurA domain [Delftia acidovorans SPH-1] Length = 475 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 62/473 (13%), Positives = 135/473 (28%), Gaps = 92/473 (19%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + V + + I+++ G + E L +++L+ L+ Q Sbjct: 73 VAVVNSEPVTNNEVRARMARVAQNIAEQ-GGQMPPEAL----LAREVLERLIVEKAQLQE 127 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 +D GL D V + + N SRL EG+NEK++ + + ++ Sbjct: 128 AKDTGLRVDDYAVDQALTNV----ARQNGLDKAGLQSRLRAEGVNEKQFREELRRQITLQ 183 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + R V ++A + ++ + + Sbjct: 184 RLRE---------------------------------RDVDGRVRVTDADIDRYLAEQRS 210 Query: 223 NY--RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 +AP + +IL V E E++ + + Q Sbjct: 211 GGADKAPAAVNLGHILISVPENASPAEVAE---------REARAKQAAEAARTQ------ 255 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFT 339 F+ + +E G+ + L +G Sbjct: 256 -------------GDFLAVVKEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIV 302 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQE------VKKDIANQMRITKASEKVKEDYKRLEE 393 G+ + V + S + I +QM A++++ + +R++ Sbjct: 303 GPFRSGAGFHVLKVLEKSQAGMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVD- 361 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 + S + ++R G +P EQ+L + + Sbjct: 362 --SGQASFESLAREFSQDG----SARNGGDLGWASPGQFVPEFEQVLNAL-----QPGQV 410 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + +Q+ E A E+ V+ + K + + +L Sbjct: 411 SDPLVSRFGVHLIQLIERRQAALTPREQ-RDMVRNVVRERKLETDYQAWLQEL 462 >gi|313204350|ref|YP_004043007.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter propionicigenes WB4] gi|312443666|gb|ADQ80022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter propionicigenes WB4] Length = 647 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 51/382 (13%), Positives = 116/382 (30%), Gaps = 62/382 (16%) Query: 22 FVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80 + FL W LS F+ + ++++ + V S F + + Sbjct: 5 VIAFLTFWALSVGSFAQTSDPVLMTINGKPVSKSEFEYIYN-----------KNNTNNSL 53 Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 LD+ + + ++ + + G++ + + S+ Sbjct: 54 DKKTLDEYV-ELFINFKLKVEEAKKQGIDTTEAFISEL----------------SGYRSQ 96 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR---PSNLLLDQAKRFYFENRSVDYIVL 197 L R + + + + + + V + P N L + + E ++ + L Sbjct: 97 LTRPYLTDPKVDEILLREAYERSKEDVDVSHILIRIPQNALPADTLKAWNEINTI-WRRL 155 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 + + +A + + EK R Y S ++ + Sbjct: 156 EHENFSRVAKEISQDESA--EKNSGRLGWISVFRTVYPFESAAYNTPVGSYSKP-IRTAF 212 Query: 258 EKNKEKYFSPEIRT------VEQLVFPNQK-----------EADEAFQSLKKGKKFIQLA 300 + K R V ++ K D ++ L G+ F LA Sbjct: 213 GYHIVK--VHARRKTLGDVLVSHIMILTNKGDDFLNKRAKTTIDSLYRRLIAGEDFGALA 270 Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + + + L F + + F+L G+ + I + G+ I + + Sbjct: 271 RKYSQDKTTSSKNGELPWFGSGRMV-PEFEKAAFALKNVGEISKPIQTNGGWHILKLLDK 329 Query: 357 KPSFTVSFQEVKKDIANQMRIT 378 K SF E+K D+ +++ Sbjct: 330 K--GIASFDELKADLERKVKRD 349 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 87/273 (31%), Gaps = 47/273 (17%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK------------GK 294 ++ L+ YE++K E V ++ + A A +LK + Sbjct: 106 KVDEILLREAYERSK------EDVDVSHILIRIPQNALPA-DTLKAWNEINTIWRRLEHE 158 Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F ++A+E + S LG S + + ++ G ++ I +FGY I Sbjct: 159 NFSRVAKEISQDESAEKNSGRLGWIS-VFRTVYPFESAAYN-TPVGSYSKPIRTAFGYHI 216 Query: 351 AHVSNIKPSFTVSFQEV---KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 V + + +V I +++ K L L G ++R+ Sbjct: 217 VKVHARR----KTLGDVLVSHIMILTNKGDDFLNKRAKTTIDSLYRRLIAGEDFGALARK 272 Query: 408 E---KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464 K S + + G + F + + +G + Sbjct: 273 YSQDKTTSSKNGELPWFGSGR---------MVPEFEKAAFALKNVGEISKPIQT-NGGWH 322 Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 +++ + +E+ D+++ K ++ Sbjct: 323 ILKLLDKK--GIASFDELKADLERKVKRDDRSK 353 >gi|218961685|ref|YP_001741460.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730342|emb|CAO81254.1| hypothetical protein; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 679 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 18/185 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + EY + + I++D+L + Y +N +++ T++ + N+ Sbjct: 112 KRFYIQEYYK--------RNVSDLVFITDDDLLSYYNQNLSQFYQYPYITIDYIQAENED 163 Query: 282 EADEAFQSLKKGKKFIQL---------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 A +A LKKG F + A+ + ++ L D+ L + I + Sbjct: 164 AAKKALAELKKGISFATVSDTYNQNSYAKGLKGRIKNVRLNGNIPGIGNDIELENIIRNA 223 Query: 333 AKKG-DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +F + +G+ I + + + F EVK +I ++R K E + L Sbjct: 224 QVDTLNFIGPVKTDYGWHILRIVDWIEGYQKDFNEVKPEIEQRVRPMKERELLNALTDNL 283 Query: 392 EEFLA 396 + A Sbjct: 284 KIKYA 288 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 13/189 (6%) Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 ++F + +D +A + IEI+++E+ YE+ KE++ +P RT+E Sbjct: 376 EKYFSENEDYLQA--KRSYVLRRAFEKLVSDTIEITDEEIAERYEREKERFSTPAYRTIE 433 Query: 274 QLVFPNQKEADEAFQSLKKG------KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327 L F N+K+A+ A++ K +K ++ ++ + L I D Sbjct: 434 VLFFDNKKDANTAWKKYSKAYKKHNEQKMQEIIKKYSLKPENAILDHQYNNGIITGFGQD 493 Query: 328 SIFSLA----KKGDFTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + FS G +PV + G ++ PS S +E + + ++ K Sbjct: 494 AEFSSQIWNNPVGYLSPVFTSARGDIVFFRTLKETPSSYKSKEETETQLRRMIKSEKEKA 553 Query: 383 KVKEDYKRL 391 K++E + L Sbjct: 554 KMEEVTENL 562 >gi|256823427|ref|YP_003147390.1| SurA domain-containing protein [Kangiella koreensis DSM 16069] gi|256796966|gb|ACV27622.1| SurA domain protein [Kangiella koreensis DSM 16069] Length = 427 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 49/416 (11%), Positives = 126/416 (30%), Gaps = 63/416 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + S Q I + G + E L K++L+ L+ + Sbjct: 25 DKVIAHVDEDVILQSELDRKVIQAKQQIRSR-GGQLPPEDV----LKKELLEQLIIQSLQ 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q G++ + A+ + + + D F LA++GI + ++D K + Sbjct: 80 YQMAVRSGMQLQPAELQQYAAQV----AQSSGMTLDEFRLSLAQQGIAYELFLDDLRKEI 135 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + FV ++ S+ ++ + V+Y + + A+ + ++ + + Sbjct: 136 LTGQLRDAFVSRRIKVSDKEIESLIQSMNAQNQVEYHL--GHILIAVQEDADEETQKQAK 193 Query: 219 KYKDNYRAP--------EYKRISYILFDVHEKEKKIEISNDELQAEY------------- 257 + E ++ D E + + + Sbjct: 194 QNALKVMKELKAGADFAETAKVVSSSPDAAEGGDFGWRTESNMPTLFANVVNFLDTGDIS 253 Query: 258 ---------------EKNKEKYFSPEIRTVEQLVF-----PNQKEADEAFQS-----LKK 292 +K E+ + ++ + A + Q+ L Sbjct: 254 QPIRSPSGFHILKIKDKRGEQQHLVQQTNARHILIRPDAITTESNAKQQLQNIRQRVLAG 313 Query: 293 GKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F A++ LG ++ + D ++ L + + +FG+ Sbjct: 314 EADFGDEAKKHSDDPGSAKLGGNLGWNNLGVYDPVFEQTLTDL-DVNEISEPFQSNFGWH 372 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 I + + ++ ++ K E+V+ + L + + ++E + Sbjct: 373 IVQLLGRRTDDQTD-AMKRQQAMRILQQRKFGEEVENWIRELRDEAYVKKIVEEDA 427 >gi|323339608|ref|ZP_08079882.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC 25644] gi|323093003|gb|EFZ35601.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC 25644] Length = 304 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 30/198 (15%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 ++ + + KYK Y ++ K I L +I++ Sbjct: 74 KVTDKKVDAEYNKYKKQYGSSFSTVLAQNNYTKSSFKKNIRSSLLLHEALVANTKITDKM 133 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSD 309 L+A++++ + K V ++ + +A+ LKK K F +LA+E+ Sbjct: 134 LEAQWKEYEPKIT------VAHILVAKKSDAEAIINELKKDGSYKNFAKLAKEKSTDTGT 187 Query: 310 ISLG-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 S G + + D + + F L + T + S+GY I + ++K Sbjct: 188 KSNGGKLSAFDNTDTSLDSTFKKAAFKLKQGTFTTEPVKTSYGYHIIY--SVKNPGKGKM 245 Query: 365 QEVKKDIANQMRITKASE 382 + KK++ +Q+ KAS+ Sbjct: 246 SDHKKELKDQIINAKASD 263 Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 33/168 (19%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 GS TV + KV S + +S + K++L ++ Sbjct: 27 GSKTVATTSGGKVTESEYYSS--------------------LKKTSSGKQVLQEMILNKI 66 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 LD ++ G + +V E + K K F + LA+ + + + Sbjct: 67 LD---KEYGDKVTDKKVDAE-------YNKYKKQYGSSFSTVLAQNNYTKSSFKKNIRSS 116 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 L + V + ++ +L+ + Y +V +I++ + Sbjct: 117 LL---LHEALVANTKITDKMLEAQWKEYEPKITVAHILVAKKSDAEAI 161 >gi|320539610|ref|ZP_08039274.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia symbiotica str. Tucson] gi|320030222|gb|EFW12237.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia symbiotica str. Tucson] Length = 435 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 53/376 (14%), Positives = 119/376 (31%), Gaps = 65/376 (17%) Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 Q+ G + + L +I++ L+ Q + +G+ + + IA Sbjct: 58 QQDGQPLPDDNL----LRHQIIERLIMDNIQLQMAQKMGITVSNADLDNSIANIAA---- 109 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV-GMFVGGMRPSNLLLDQAKRFY- 186 NK S + +RL+ EG+N Y K + +V + ++ + Sbjct: 110 QNKMSLNQLRNRLSYEGLNYNTYRLQIRKEMLIAEVRNNAVRRRVTILPQEVEALAKQVG 169 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 +N S + +++ +P +PS + E + + + Sbjct: 170 AQNVSDTEMNISHILLPLPENPSQQQMDS-AEALARKLMGELHNGADFGKLAITYSADPQ 228 Query: 247 EISN--------DELQAEYEKN-----------------------------KEKYFSPEI 269 + E+ + ++ + S Sbjct: 229 ALKGGNMGWGKLQEIPTLFAEHLVNAKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTE 288 Query: 270 RTVEQLVFP-----NQKEA----DEAFQSLKKG-KKFIQ----LAEEQGKSLSDISLGSF 315 ++ +A Q +K G KF L+++ G +L LG Sbjct: 289 VHARHILLKPSVVMTDDQARTKLASIAQDIKSGRTKFADEAKHLSQDPGSALQGGDLGWA 348 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S + I D + D++ L KG+ + +H +FG+ + + + + + K + Sbjct: 349 SPD-IYDPAFRDALLKL-NKGEISAPVHSAFGWHLIQLLDTR-QVDKTDAAQKNRAYRML 405 Query: 376 RITKASEKVKEDYKRL 391 K +E+ + + L Sbjct: 406 FNRKFAEEAQTWMQEL 421 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 101/309 (32%), Gaps = 29/309 (9%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + + +++ I E++A ++ + S + ++ P Sbjct: 128 NYNTYRLQIRKEMLIAEVRNNAVRRRVTILPQEVEALAKQVGAQNVSDTEMNISHILLPL 187 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325 + A + L G F +LA + G+ + ++ Sbjct: 188 PENPSQQQMDSAEALARKLMGELHNGADFGKLAITYSADPQALKGGNMGWGKLQEIPTLF 247 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEK 383 A+ + + AKKG I G+ I V++I+ S +VS EV I + + ++ Sbjct: 248 AEHLVN-AKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTEVHARHILLKPSVVMTDDQ 306 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + + K +S D G P L ++ Sbjct: 307 ARTKLASIAQDIKSGRT--KFADEAKHLSQDPGSALQGGDLGWASPDIYDPAFRDALLKL 364 Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSS 501 ++ P S + + + R D+ + K AEE + Sbjct: 365 --------NKGEISAPVHSAFGWHLIQLLDTRQVDKTDAAQKNRAYRMLFNRKFAEEAQT 416 Query: 502 KANQLVLEY 510 +L + Sbjct: 417 WMQELRAQA 425 >gi|325845187|ref|ZP_08168495.1| putative foldase protein PrsA [Turicibacter sp. HGF1] gi|325488783|gb|EGC91184.1| putative foldase protein PrsA [Turicibacter sp. HGF1] Length = 549 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 72/191 (37%), Gaps = 17/191 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEE 302 I++++LQA Y + K ++ +++ A + L + F +LA+E Sbjct: 334 PITDEQLQAAYNEYKPNIS------ARHILVEDEETAKDLIAQLDAAEDKEAKFEELAKE 387 Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 K S LGSF K + ++ F+L + +GY + + Sbjct: 388 YSKDGSASNGGDLGSFGKGQMV-SEFENAAFALNVGEYTEEPVKTQYGYHVIY--KYAED 444 Query: 360 FTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 SF ++K ++ +R + ++ K++ + + + + + +R + ++ Sbjct: 445 EKPSFDDLKDELETTIRSEEYTQLKLEAILIKYRTEANVKFTDESVQKRYDAIVANIQDS 504 Query: 419 DFAGKDVKGKE 429 A + Sbjct: 505 LSAEEGTDNTT 515 >gi|319786209|ref|YP_004145684.1| SurA domain [Pseudoxanthomonas suwonensis 11-1] gi|317464721|gb|ADV26453.1| SurA domain [Pseudoxanthomonas suwonensis 11-1] Length = 442 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 44/402 (10%), Positives = 108/402 (26%), Gaps = 62/402 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + S + + + + + S+ L++++L+ LV Sbjct: 34 ERIAAIVEEDVILQSELDLALRNVMAQYAGR-----ESQLPPRPVLERQVLERLVLTRLQ 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 G+ V +A + N + D RLA +G++ +E+ + + Sbjct: 89 VARARQQGIRVSEQEVNQAVAMI----AQQNGLTLDGLRQRLASDGLSFEEFRRSLNEEI 144 Query: 160 SRTDVVGMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNR------------------ 200 + + F+ + S +D R +R + Sbjct: 145 TVQRLRQGFIQRINVSEGEIDAALAREATGSRQYRLAHILVALPDGATAEQITTGQRKVE 204 Query: 201 ---HVPAIADPSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKI 246 +V + A + + P + E + Sbjct: 205 GILNVINKGEMDFAAAAVRYSDSPNALEGGDLGWRSLDEIPSAFAQQILQLQPGEIFGPV 264 Query: 247 EISNDELQAEYEKNKEKYFSPEI----RTVEQLVF---------PNQKEADEAFQSLKKG 293 + + ++ +P V ++ + + D + G Sbjct: 265 RGPSGFQLLRLTEVRDSAQAPAQTVTEYHVRHILVRVNDRQDAATARAKIDTLRARIAGG 324 Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F ++A E + S LG F + + +L + G + G+ Sbjct: 325 ADFQEVAREASEDNSTRGQGGDLGWFPADA-YGPEFGGQVTAL-EDGQVSQPFRTDAGWH 382 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I + + + I + + K E+ + + + Sbjct: 383 IIERVARRETDVTD-DNRRAQIRDTIGRRKLEEEYERYLQEM 423 >gi|319779226|ref|YP_004130139.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella equigenitalis MCE9] gi|317109250|gb|ADU91996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella equigenitalis MCE9] Length = 258 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 7/169 (4%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + + +K + +E++ Y+ + + V ++ ++ A E +Q Sbjct: 86 SREQILTTALLSKYIEKNPVKEEEIKKLYDSQIKALGDVKQYNVRHILVKDEDRAKELYQ 145 Query: 289 SL-KKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 L K F + A+ +QG + LG A ++ AK G T + Sbjct: 146 QLVDKKIDFAETAKKESIDQGTASGGGVLGWHPSSNFV-PQFAKAV-EEAKIGVLTEPVK 203 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FGY + V +I+P+ SF+ K++I N + + K ++ +E K+ + Sbjct: 204 SDFGYHLILVDDIRPTPLPSFEASKREIVNALSLEKVNKYTEELKKKAK 252 Score = 38.4 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 53/154 (34%), Gaps = 7/154 (4%) Query: 467 QIKESIPARDRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 +IK+ ++ + L +V +V+ + +A +L + + +F + K Sbjct: 109 EIKKLYDSQIKALGDVKQYNVRHILVKDE------DRAKELYQQLVDKKIDFAETAKKES 162 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 T + + ++ V P+++ Y + V + + P+ Sbjct: 163 IDQGTASGGGVLGWHPSSNFVPQFAKAVEEAKIGVLTEPVKSDFGYHLILVDDIRPTPLP 222 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619 + + ++ + ++ LK + + + Sbjct: 223 SFEASKREIVNALSLEKVNKYTEELKKKAKIKTN 256 >gi|329765286|ref|ZP_08256866.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138192|gb|EGG42448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 92 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADS 328 ++ Q EA + +KKG+KF +LA+E G + D SLG F+K + ++ Sbjct: 8 SHILVEKQSEAIAICERIKKGEKFGKLAKELSIDTGSAKKDGSLGYFTKGMMVKP-FEEA 66 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352 F L + G+ + + FGY I Sbjct: 67 AFKL-QIGEMSEPVKSEFGYHIIK 89 >gi|212550676|ref|YP_002308993.1| peptidyl-prolyl cis-trans isomerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548914|dbj|BAG83582.1| putative peptidyl-prolyl cis-trans isomerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 711 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 103/287 (35%), Gaps = 40/287 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56 L+ IR ++ + + + V F+ + D L S S +V + + + + Sbjct: 4 LKKIRN--KSLLLVMVVGVALFSFI---IGDFLRSGSAFINQKKENIVVINGEAINCQDY 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR-- 114 + + + ++ + + IL+ ++ L + + +GL Sbjct: 59 QTRVEDYINNAIRNNNNQPLTDD-EQYQIKQMILNEMIDDILLFKEAKKLGLVVSKEEYK 117 Query: 115 -------VWGEIARSPLFHGKDN-KFSHDV---FVSRLAREGINEKEYID---------H 154 + + + P F KF F+ + E + ++ Sbjct: 118 DLVMGDNISPLLQQIPSFRNPKTKKFDKTALLHFLQNIENEDYSTEQSSRLMSIKKAWLA 177 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLD--QAKRFYFENR---SVDYIVLNNRHVPA-IADP 208 K + + + F + ++L + +A+ FY E + DY+ + +P + Sbjct: 178 IEKQIIKEQLKKKF-NTLFTYSILTNVLEARAFYEEKKINVDFDYVAQSYNSIPDREVNV 236 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 S+ + + + + K+ YR E + +I ++ +K ++ ++L+ Sbjct: 237 SDIEIQKRYNECKNLYRQKEGALVDFIALNIVPSKKDYQMIENKLKE 283 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 108/325 (33%), Gaps = 27/325 (8%) Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLADSIFSLAKKGDFTP 340 D Q +KKG F +A K + LG ++ + D+ D I + Sbjct: 379 DSLIQVVKKGTPFSDMASTLSKGKTTGELGWMTESQLISRLDIQFKDKILTAKINEPV-- 436 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFLALGT 399 VI + G + V K IAN Q+++ + E Y R +F++ Sbjct: 437 VIKSNIGIFLVQVLEKTKPIK------KYKIANIQIQVVPSQETKTRLYNRFIQFISSNH 490 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459 S+ ++ K + KD + I Q++ +F D Sbjct: 491 SIADLRENAKSSGFSIQTDVEISKDQ--ININHIQNTRQIVQWIFNNKKGAISDIFECQN 548 Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY-SKEGKNFR 518 + V IKE + R L+ + + +K++ K KA +L+ + K+ + Sbjct: 549 SEYFAVVAIKEHLREGFRPLKSISSVLKRNLINEK-------KALKLISDLKVKKLNTLK 601 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGI--SQVFSGPVEMVKCFPIENGLSYVVFKV 576 + + + + +N + G + I +V P+ + P V + Sbjct: 602 QYAEAMNTTPQSVQSVNFATSYISGIGKEPILNVKVPEAPINQI-SGPYAGKNKIYVLYI 660 Query: 577 TNSKVGPVQEKDK--FISYLTQMMN 599 TN + K Q M Sbjct: 661 TNKNISKEPYDTKCFLKQAQIQNMR 685 >gi|187250598|ref|YP_001875080.1| hypothetical protein Emin_0179 [Elusimicrobium minutum Pei191] gi|186970758|gb|ACC97743.1| hypothetical protein Emin_0179 [Elusimicrobium minutum Pei191] Length = 231 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 69/191 (36%), Gaps = 10/191 (5%) Query: 24 PFLI----WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 F+ G + +S T+ VG +K+ + +Q+ + + + + Sbjct: 18 SFIGGLFYAGYNSFSVGLSNHETIAKVGNEKIKARQYNRIVEQQERELRRLATEDFDDDG 77 Query: 80 ARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 + L ++ L L+ + + Q E G+ + I +P F + FS +V Sbjct: 78 GSLLNYLKQRALQTLMFQSAMVQSAEKYGIHTPDFEIAYMIQTAPAFTN-NGLFSKQAYV 136 Query: 139 SRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV-DYIV 196 + + + E+ + + + + + + + + L + + ++ DY Sbjct: 137 WTVRNQLMMTPAEFENQERRNMQMNKMANIIMSSYKSTPEEL--LFNYKTQYGTIKDYAK 194 Query: 197 LNNRHVPAIAD 207 +P +A+ Sbjct: 195 KKEDFIPTVAE 205 >gi|78357080|ref|YP_388529.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219485|gb|ABB38834.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 329 Score = 85.4 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 104/356 (29%), Gaps = 81/356 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V + + +L + + ++ A ++ + L++++ + Sbjct: 45 NKIVAVVNGEIITQYDLQARAASKLHRAG--LSALDPADAAAIKKIESETLEDMIVDRLM 102 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E L AD V E+ LAR I E + + Sbjct: 103 VQEAERYNLGADDAAVDNELRS------------------LLARMQITEDQLVAQLKSE- 143 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 D+ F G+ +N++ + F V + + ++E+ Sbjct: 144 -GQDLD--FYRGLIRNNIMRQKLLSFM---------------VSRKVVVTRQDIEAYYEE 185 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +K+ Y + +S LVF Sbjct: 186 HKNEYMQDKSISLSL----------------------------------------LVFAP 205 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSK-EYIPDVSLADSIFSLAKKGD 337 + + + +++G F ++ + S G+ K ++ VS G Sbjct: 206 TADPEPVLRDIREGNISFADAVKKYSVGPAASSGGAIGKLDWSSLVSQWKQALEGVAAGG 265 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + I HV + EV +I ++R E+ +E ++L E Sbjct: 266 LSRPIEYDGRAAYLHVDEVIEGTVRPVDEVADEIEAKLREPMLKERFEEYTRKLRE 321 >gi|326794311|ref|YP_004312131.1| Chaperone surA [Marinomonas mediterranea MMB-1] gi|326545075|gb|ADZ90295.1| Chaperone surA [Marinomonas mediterranea MMB-1] Length = 419 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 53/399 (13%), Positives = 114/399 (28%), Gaps = 76/399 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V Q + S ++ I + G+ ++IL+ L+ Sbjct: 27 DGVVAIVDSQPLLESDINTRFQVIKDRI---------PGGVMTAGIRRQILNQLIEETVQ 77 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGINEKEYIDHYTK 157 + + +G+ + KFS D+ L+R+GI+ Y Sbjct: 78 INYGKRLGIRIPQENTDAAVLNVAQ------KFSTDLGGLKQLLSRQGIDYSRYRQQIEN 131 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV--LNNRHVPAIADPSNAVLTQ 215 + V + ++ + F +++ L+ RH+ A L + Sbjct: 132 EILINAVKQRVIKDRI--SITEQEISDFISASQNTQSSKNELHLRHIIVRAKNETEALAK 189 Query: 216 WFE-----KYKDNYRAPE--YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP- 267 + ++++ Y + L + + K P Sbjct: 190 IKQIASGIASENDFINQAITYSDGQFALEGGDLGWRPVSQLPALFTKAINTQKGPLIGPL 249 Query: 268 ------------EIRTV----------EQLVFP---------NQKEADEAFQSLKKGKKF 296 E R+ ++ +E ++ G+ F Sbjct: 250 KSNAGYHLLWVIEKRSANVQLQAQTKTRHILLQPNEIRTEQQTVALINELYKRAMSGEDF 309 Query: 297 IQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA E QG +L LG + + + + K G + FG+ I Sbjct: 310 AGLASEYSDDQGSTLQGGDLGWVKLGMMV-PAFEK-VMTATKTGAVSKPFRSQFGWHILK 367 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 V + + K+DI+ ++ +A + + + Sbjct: 368 VEDRR----------KEDISESVKQQQAEKALVAQKQDF 396 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 89/296 (30%), Gaps = 29/296 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN 279 YR I + +I I+ E+ ++ S + ++ N Sbjct: 123 SRYRQQIENEILINAVKQRVIKDRISITEQEISDFISASQNTQSSKNELHLRHIIVRAKN 182 Query: 280 QKEADEAFQSLKKG----KKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSL 332 + EA + + G FI A +L LG +P + +I Sbjct: 183 ETEALAKIKQIASGIASENDFINQAITYSDGQFALEGGDLGWRPVSQLPAL-FTKAIN-- 239 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +KG + + GY + V + + + + + + ++ + Sbjct: 240 TQKGPLIGPLKSNAGYHLLWVIEKRSANVQL--QAQTKTRHILLQPNEIRTEQQTVALIN 297 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 E S ++ + S D G K +P E+++ K +SK Sbjct: 298 ELYKRAMSGEDFAGLASEYSDDQGSTLQGGDLGWVKLGMMVPAFEKVMTA--TKTGAVSK 355 Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 + +++++ D+ + K + + + ++ VL Sbjct: 356 PFRSQF---GWHILKVEDRR----------KEDISESVKQQQAEKALVAQKQDFVL 398 >gi|89891030|ref|ZP_01202538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BBFL7] gi|89516674|gb|EAS19333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BBFL7] Length = 658 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 15/171 (8%) Query: 269 IRTVEQLVFPNQKEA---------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----F 315 TV ++ + ++A + ++ L++ KF +LA E +S S G F Sbjct: 231 EVTVSHIMTFDARDASEKTAAKRIQDVYKQLQESGKFEELAREFSDDMSSASRGGKLDRF 290 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + D F L +KG ++ FG+ I + P S++E+ + ++ Sbjct: 291 GTGGLNAPVFEDIAFGLEEKGSYSAPFKSKFGWHIVKLIEKHP--VGSYEELAPSLKEKI 348 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 R + + K+ + + + +E+ + D L + D Sbjct: 349 RKSPRARKITDSFNKGLREKYNVKRSEEVLKVLNETITDSILTNSWQFDPS 399 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 86/251 (34%), Gaps = 47/251 (18%) Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 K++Y+ + +Y E++ ++ Y++ K ++ Sbjct: 84 DNKESYK---KELNNYRQSLAQAYLTDTEVTESLVREAYDRKKR------EVNASHILVK 134 Query: 279 ------------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV 323 + + L G F QLA + + ++ LG FS + Sbjct: 135 VGPGDTPHDTLKAWNKINSIKNELDNGADFSQLARTKSEGPSAGNEGKLGWFS-VFRMVY 193 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-------TVSFQEVKKDIANQMR 376 ++ F+ G + + FGY I V +P+ ++F A Sbjct: 194 PFENAAFN-TPVGKHSDIFRTDFGYHIVKVFEDRPARGEVTVSHIMTFD------ARDAS 246 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK-DVKGKEVAAIPY 435 A++++++ YK+L+E +E++R S D+ GK D G P Sbjct: 247 EKTAAKRIQDVYKQLQE----SGKFEELAREF---SDDMSSASRGGKLDRFGTGGLNAPV 299 Query: 436 KEQLLFRVFGK 446 E + F + K Sbjct: 300 FEDIAFGLEEK 310 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 26/196 (13%) Query: 210 NAVLTQWFE-----KYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDEL--QAEYEKNK 261 + + +++ + KD + EYK +LFD+ E + + D L QA Y+ + Sbjct: 451 DKSIAAYYDRNLVNENKDFAFIYDEYKE-GLLLFDLLETKIWNKAKEDSLGQQAYYDLHT 509 Query: 262 EKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319 +KY R V+ ++ ++ A + Q L KG ++ E ++ +K Sbjct: 510 DKYQW--KRRVDIILTQNTTEEVATQVQQLLMKGTSREEIKER-------FNIDGRTKVM 560 Query: 320 IPDVSLADSIFSLA-----KKGDFTPVIHGSFG-YVIAHVSNIKPSFTVSFQEVKKDIAN 373 + + + ++ L K+G + G Y + V I + +E + + N Sbjct: 561 MSNGVVEETYNRLPDNFEIKEGVSSIYYDEKTGFYKVILVKEILEPTQKTLEEARGAVIN 620 Query: 374 QMRITKASEKVKEDYK 389 + + + Sbjct: 621 DYQQQLEKDWMSSLRN 636 Score = 44.6 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 85/250 (34%), Gaps = 26/250 (10%) Query: 383 KVKEDYKRLEEFLALGTSMDEIS--RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 K ++ L G +++ + E + + + + + Sbjct: 146 KAWNKINSIKNELDNGADFSQLARTKSEGPSAGNEGKLGWFSVFRMVYPFENAAF----- 200 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 + P+ K + D Y V++ E PAR EV + +E+ + Sbjct: 201 ------NTPVGKHSDIFRTDFGYHIVKVFEDRPARG----EVTVSHIMTFDARDASEKTA 250 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ--VFSGPVE 558 +K Q V + +E F ++ + + + ++ ++D + + F + Sbjct: 251 AKRIQDVYKQLQESGKFEELAREFSDDMSSASRGGKLDRFGTGGLNAPVFEDIAFGLEEK 310 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM-----NKDLLDSVIAYLKSQ 613 P ++ + + K+ PV ++ L + + + + DS L+ + Sbjct: 311 GSYSAPFKSKFGWHIVKLIEKH--PVGSYEELAPSLKEKIRKSPRARKITDSFNKGLREK 368 Query: 614 YSVTVHDNLI 623 Y+V + ++ Sbjct: 369 YNVKRSEEVL 378 >gi|55980571|ref|YP_143868.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8] gi|55771984|dbj|BAD70425.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8] Length = 337 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 65/153 (42%), Gaps = 8/153 (5%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 +I +S L+A + +Y P + L+ P ++E +EA L +G+ F ++ Sbjct: 172 ARYRSRIAVSRAALKALWLL-SPEYRHPTLYCARHLLVPTREEVEEARLRLARGEAFAEV 230 Query: 300 A----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A ++ G LG + + +++ L + G+ + + FGY + + Sbjct: 231 ARAVSQDPGSREEGGDLGCAPEGTYV-PAFEEALVRL-RPGEVSGPVRTEFGYHLILLER 288 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + P +EV + ++ +A E+++E Sbjct: 289 VVPPGRYPLEEVAPLLEKEVA-DRAWERLEEAL 320 >gi|119896837|ref|YP_932050.1| peptidylprolyl isomerase [Azoarcus sp. BH72] gi|119669250|emb|CAL93163.1| probable peptidylprolyl isomerase [Azoarcus sp. BH72] Length = 285 Score = 85.4 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 64/179 (35%), Gaps = 18/179 (10%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + + + E + Y + +++ +PE RTV ++ + + Sbjct: 97 QRDLLVEAVMERVGARAGSVDETEAEIFYYAHVDRFRAPERRTVRHILVTINDAYPDNRR 156 Query: 289 SLK-------------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332 + K ++F + A + +L+ LG + + L +F + Sbjct: 157 EVASRRIHEICKRLNNKPERFEEQAMKHSECPTALNGGLLGELPRGTLY-PELDAVLFEM 215 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 K G + V+ G+ + I+P +SF EV + + Q+ + + + L Sbjct: 216 -KAGQLSGVVESEIGFHLLRCDAIQPERVLSFAEVSESLRQQLTAERGRKDARRWLTEL 273 >gi|161504788|ref|YP_001571900.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866135|gb|ABX22758.1| hypothetical protein SARI_02912 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 428 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 116/371 (31%), Gaps = 61/371 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENR 190 + D SRLA +G+N Y + K + ++V + +D + +N Sbjct: 110 TLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEIS 249 + + L++ + +P++ + + + E + + + + + Sbjct: 170 ANTELNLSHILIALPENPTSGQVND--AQRQAESIVEEARNGADFGKLAITYSADQQALK 227 Query: 250 N--------DELQAEYEKNKEKYFSPE-----------------------------IRTV 272 EL + + + Sbjct: 228 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSPNISVTEVHA 287 Query: 273 EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEY 319 ++ ++A +E +K GK F A+E + + G ++ Sbjct: 288 RHILLKPSPIMTDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPD 347 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 I D + D++ L K G + +H SFG+ + + + + + K + K Sbjct: 348 IFDPAFRDALTKLHK-GQMSAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRK 405 Query: 380 ASEKVKEDYKR 390 SE+ + Sbjct: 406 FSEEAATWMQE 416 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR K + +E ++I + E+ A ++ + + + ++ Sbjct: 124 NYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDANTELNLSHILIAL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 Q++A+ + + G F +LA + G I + + Sbjct: 184 PENPTSGQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + ++ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSPNISVTEVHARHILLKPSPIMTDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + + + G + + K S D + G P L ++ Sbjct: 304 RLKLEEIAADIKSGKT--TFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 360 >gi|189345572|ref|YP_001942101.1| SurA domain [Chlorobium limicola DSM 245] gi|189339719|gb|ACD89122.1| SurA domain [Chlorobium limicola DSM 245] Length = 437 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 68/514 (13%), Positives = 149/514 (28%), Gaps = 115/514 (22%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 L++L +PF +S + V +G + V S + G Sbjct: 11 LILLCMPF----ISGTAVAAIADRIVAVIGNEVVLQSELDERVLMTHMQYPESKGDK--- 63 Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137 L +K+L++L+ + + D + G + ++FS Sbjct: 64 ------TLPEKVLNSLIDQKVILAKAKIDSTGIDDAALEGLVGERM--KVLASRFSSR-- 113 Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 +R G + + + ++ Sbjct: 114 EEMESRFGKSSLVIRRELRQEIKNQQLIESLR---------------------------- 145 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNY-RAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 R + ++ ++E K PE +S IL Sbjct: 146 --RKKLSGVTVTHEESMAFYEANKSRLPVIPEGVSVSQILKYPD---------------- 187 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312 + E R+ + ++ LK G F LA++ + L Sbjct: 188 --------VTAESRS------GAKAMIEKVQAELKGGADFGALAKKYSQDPGSAQLGGDL 233 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF------TVSFQE 366 G K + S ++ + L K+G + V+ +G+ + + N + + V+F Sbjct: 234 GYVQKGELI-QSFENAAYGL-KEGQVSGVVETRYGFHLIQLLNKEVNSLHVRHILVAFDR 291 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLVDFAGKD 424 + D A + + ++ + LA + E++ + VS L + Sbjct: 292 SRSDAAGTIGLLRSIRA---------DVLAGKATFAEMAGKYSDDPVSARLGGAILSASS 342 Query: 425 VKGKEVAAI-PYKEQLLFRV-FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK---- 478 +++ + P +++ + D D Y ++ E I + Sbjct: 343 KNVFQLSTLRPQLREVIGTLKQSGDISEPVKVDPPQGDSFYAIFRLNEKIGSHQLNPRQD 402 Query: 479 ---LEEV-----LTDVKKDWKTVKTAEEVSSKAN 504 LEE+ + ++W E K++ Sbjct: 403 YALLEEIVLENKRQRLYEEWLQELRKEITVRKSD 436 >gi|297181079|gb|ADI17278.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha proteobacterium HF0070_17D04] Length = 355 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 4/144 (2%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 EI+ + +QA Y+ S E T ++ ++EA L G F +LA E+ Sbjct: 187 EITEEAIQAAYDTYVADTGSRETVTASHILVETEEEAKAIIDQLMDGADFAELAREKSTG 246 Query: 307 LSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVS 363 S GS + + F + G F+ + FG+ + VS + Sbjct: 247 PSGPGGGSLGSFGRGQMVPAFEAAAFGMP-VGSFSDNPVQTQFGWHVIQVSEKGIQEAPA 305 Query: 364 FQEVKKDIANQMRITKASEKVKED 387 +++ IA + + V+ Sbjct: 306 LDQMRDQIAANLSRQSFARIVETL 329 Score = 45.4 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 5/138 (3%) Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 V V+T EE + +QL+ +G +F ++ + + Sbjct: 207 RETVTASHILVETEEEAKAIIDQLM-----DGADFAELAREKSTGPSGPGGGSLGSFGRG 261 Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602 + F PV P++ + V +V+ + D+ + +++ Sbjct: 262 QMVPAFEAAAFGMPVGSFSDNPVQTQFGWHVIQVSEKGIQEAPALDQMRDQIAANLSRQS 321 Query: 603 LDSVIAYLKSQYSVTVHD 620 ++ L+ ++ + Sbjct: 322 FARIVETLRVGTTIEIRP 339 >gi|257470876|ref|ZP_05634966.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium ulcerans ATCC 49185] gi|317065078|ref|ZP_07929563.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690754|gb|EFS27589.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 584 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 145/384 (37%), Gaps = 55/384 (14%) Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + + + R + E + +M RT + +N D+A+ E I Sbjct: 235 YKAYVERNEMEEDGFAVSNIEMAKRTL------NNLFITNGDRDKARELSKEYYRAQ-IK 287 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 L + + L +Y+ EYK+ + + + S+ +L+ Sbjct: 288 LAKIAIERGITV-DETL-------PLDYKFEEYKKGLF-----ENIKNSLNPSDAQLKEY 334 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---------GKKFIQLAEEQG--- 304 +EKNK Y + + A++ + K + F ++A++ Sbjct: 335 FEKNKLVYDTFPSSDSYIAILKVDASAEDKAAAKAKAEELLKTLTPENFAEVAKKNSDGP 394 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVS 363 S + LG FSK+ + + ++FS + G P + FG + ++ + K Sbjct: 395 SSPNGGDLGWFSKKDMVEP-FQKAVFS-GEVGKIYPQPVETIFGEHLIYIEDRKD----- 447 Query: 364 FQEVKKDIANQMRITKASEKV----KEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLV 418 E + ++ + + K SE K + + ++E LA GT + + +S+ K D+ Sbjct: 448 -DEERAKASHILIVPKVSEATINIKKAEIEAVKEKLANGTVNFETLSKENK----DVLQS 502 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDR 477 K + + Y E L +F D PL+K T + D Y++ + E A D Sbjct: 503 SLFSKIDDTGYIPGLGYNEALTKLIF--DAPLNKVQTALIEDKFYIFKKTNEVKYKAAD- 559 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSS 501 E+ VK D+ KT EE+ Sbjct: 560 -FNELKDRVKDDYLNSKTQEELKK 582 Score = 67.7 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 88/640 (13%), Positives = 201/640 (31%), Gaps = 100/640 (15%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVVSVGRQKVPFSSFI 57 IRK + K + ++ + ++ G L S+ GS + + K+ Sbjct: 9 AIRKFRKQ--MKPIIWLVTILMVLGGGYATLSSIIGSMSNGHSNYAFKLNGNKISKFEVE 66 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + S+ +G V+ + D +V+ + + + ++ +G V Sbjct: 67 KTKATMIDGYSRYLGDKVDRSLIDIL-----AFDEVVNKNLTLEMADKLKVKVSNGDV-- 119 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 +++ + D F L +G + + L+ + G+ P++ Sbjct: 120 ---NDQYDKIENSIGNRDQFKRMLQVQGYTKNTFKKELKDNLTVEQTLAKIQEGINPTD- 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ ++Y +N Y + + + + + L Q K I + Sbjct: 176 --EEINKYYEDNL---YTRFSGKPLSDVKNEVITDLKQ-------------TKGIEEYVL 217 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----------IRTVEQLVFPNQKEADEA 286 + + K +++ + + EY+ E+ E RT+ L N Sbjct: 218 LLDKARKNMKL--ENVSQEYKAYVERNEMEEDGFAVSNIEMAKRTLNNLFITNGDRDKA- 274 Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGS 345 +L++E ++ ++ + + D +L D F KKG F + S Sbjct: 275 ----------RELSKEYYRAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENI-KNS 323 Query: 346 FGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSM 401 A + + + +++ ++E + EE L + Sbjct: 324 LNPSDAQLKEYFEKNKLVYDTFPSSDSYIAILKVDASAEDKAAAKAKAEELLKTLTPENF 383 Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 E++++ G ++ + E VF + V Sbjct: 384 AEVAKKN----------SDGPSSPNGGDLGWFSKKDMVEPFQKAVFSGEVGKIYPQPVET 433 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV--SSKAN-QLVLEYSKEGK 515 G ++ DRK +E K +E KA + V E G Sbjct: 434 IFGEHLIYI-------EDRKDDEERAKASHILIVPKVSEATINIKKAEIEAVKEKLANGT 486 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSY 571 + +L ++ +++D+ G +F P+ V+ IE+ + Sbjct: 487 VNFETLSKENKDVLQSSLFSKIDDTGYIPGLGYNEALTKLIFDAPLNKVQTALIEDK--F 544 Query: 572 VVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVI 607 +FK TN + ++ + ++ L +I Sbjct: 545 YIFKKTNEVKYKAADFNELKDRVKDDYLNSKTQEELKKLI 584 >gi|221236099|ref|YP_002518536.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000] gi|220965272|gb|ACL96628.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000] Length = 323 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 69/177 (38%), Gaps = 6/177 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ D ++ Y + ++ E Q++ +Q EA+ + L G F LA E+ Sbjct: 130 AVTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEAESIKKLLATGASFDALAMERSTD 189 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG F+ + +P+ + A+KG G+V+ V + + + Sbjct: 190 QATRFNGGDLGYFTLDVMPEAYG--AALKDAQKGALIGPFAAEGGWVLVKVEDKRTEEPI 247 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + + + I + + + +++ + + +G S + + + + P + Sbjct: 248 TLEAARPQIIRFLTYDQVRDILEKLRGSAKVEMMIGKSQELPAGSAQEPASAPPELQ 304 >gi|261338952|ref|ZP_05966810.1| hypothetical protein ENTCAN_05153 [Enterobacter cancerogenus ATCC 35316] gi|288318779|gb|EFC57717.1| peptidylprolyl cis-trans isomerase SurA [Enterobacter cancerogenus ATCC 35316] Length = 428 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 113/365 (30%), Gaps = 57/365 (15%) Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + L +IL+ L+ + Q + +G++ ++ IA K N + D Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----AKQNNMTPDQ 113 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDV---------------VGMFVGGM--------- 172 SRLA +GI+ Y + K + ++V V + Sbjct: 114 MRSRLAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTE 173 Query: 173 ---------RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 P N DQA + RS+ N +A +A Sbjct: 174 LNLSHILIPLPENPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGW 233 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFP 278 R E + +K + + K + + ++ Sbjct: 234 GRIQELPSLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLK 293 Query: 279 ---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325 + + ++ +K GK F A+E + + G ++ I D + Sbjct: 294 PSPIMTDDQARAKLEQISADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAF 353 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++ ++K G + +H SFG+ + + + + + + K + K SE+ Sbjct: 354 RDALMKMSK-GQISAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLFNRKFSEEAA 411 Query: 386 EDYKR 390 + Sbjct: 412 TWMQE 416 Score = 57.7 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 17/234 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + +E +++ I E+ A ++ + + + ++ P Sbjct: 126 ATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPE 185 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 + +A + + G F +LA + G I + SL Sbjct: 186 NPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQ 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386 S AKKGD I G+ I V++++ S +S EV I + ++ + Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARA 305 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 +++ + G + + K S D + G P L Sbjct: 306 KLEQISADIKSGKT--SFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDAL 357 >gi|239996025|ref|ZP_04716549.1| survival protein surA [Alteromonas macleodii ATCC 27126] Length = 427 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 43/365 (11%), Positives = 116/365 (31%), Gaps = 59/365 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V + Q V S I++ Q++ ++ + S+RA L + ++ L++ + Q Sbjct: 28 VAVIVDQGVVLESEIDALVQDVKRNAEANNQQLPSDRA----LRTQAIERLITKSLQLQM 83 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR- 161 E +G+ ++ I+ + ++LA EGI +Y + + + Sbjct: 84 AERMGIRISDPQLEQTISNIAANQNAT----IEELRAQLAAEGIAYDDYREDIREEVIMG 139 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFEN-RSVDYIVLNNRHVPAIADPSNAVLTQWFE-- 218 + + ++ + + L + + +P++ + E Sbjct: 140 EVRRANVRRRVYITPQEIETLIDLMEQQGATQAEYRLGHILIGFPPEPTDEDIQSARERA 199 Query: 219 -------KYKDNY-----------RAPEYKRISYILFDVHEKEKKIEISNDE-------- 252 + ++ A E + ++ + I N + Sbjct: 200 DKVISLLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMPTLFAEAIQNKDKDALVGPI 259 Query: 253 -------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF----QSLKKGK-K 295 + + + + E ++ ++ +A + +K G+ Sbjct: 260 RSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSEDKAKAMLNRFKEEVKNGEAD 319 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F +LA+E + G P+ D++ L + G+F+ + G+ + Sbjct: 320 FAELAKEHSEDPGSALRGGELGWSDPNNYVPEFKDALAQL-EPGEFSEPVRTVHGWHLIQ 378 Query: 353 VSNIK 357 + + Sbjct: 379 LIERR 383 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 91/270 (33%), Gaps = 23/270 (8%) Query: 198 NNRHVPAIADPSNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 ++ A + + L D+YR + + +++ I+ E++ Sbjct: 99 TISNIAANQNATIEELRAQLAAEGIAYDDYREDIREEVIMGEVRRANVRRRVYITPQEIE 158 Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEE 302 + +++ + + ++ ++ AD+ L+ G F ++A Sbjct: 159 TLIDLMEQQGATQAEYRLGHILIGFPPEPTDEDIQSARERADKVISLLESGSDFAKIAIA 218 Query: 303 QGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +L +G + +P A++I + K I G+ I V + + Sbjct: 219 SSSGNEALEGGDMGWLNINAMP-TLFAEAIQN-KDKDALVGPIRSGAGFHILKVLDTRGI 276 Query: 360 FTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 V+ +EV I + I + +K K R +E + G + + K S D Sbjct: 277 EKVTVEEVNSRHILVKPSIILSEDKAKAMLNRFKEEVKNGE--ADFAELAKEHSEDPGSA 334 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 G+ +P + L ++ + Sbjct: 335 LRGGELGWSDPNNYVPEFKDALAQLEPGEF 364 >gi|170723956|ref|YP_001751644.1| SurA domain-containing protein [Pseudomonas putida W619] gi|169761959|gb|ACA75275.1| SurA domain [Pseudomonas putida W619] Length = 441 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 57/413 (13%), Positives = 131/413 (31%), Gaps = 73/413 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S ++ I+++ G V + L++++L+ L+ Sbjct: 33 DRVVAIVDNDVVMQSQLDQRVQEVQQTIAKRGGGVPPTS-----ALEQQVLERLIVENLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID------ 153 Q E G+ + I + N S D F + LAR+G++ + + Sbjct: 88 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 143 Query: 154 -----HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 ++ R V V S D K E+ + I++ D Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLAS----DMGKMQMSEDYRLANILIPTPEGANSDDI 199 Query: 209 SNAVLT--QWFEK----------------------------YKDNYRAPEYKRISYILFD 238 A +++ K PE+ ++ + Sbjct: 200 QKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAAQLPPEFAKLLSSMAT 259 Query: 239 VHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVF---------PNQKEADEAFQ 288 + S + EK + + V ++ ++ A+ ++ Sbjct: 260 GDITQPLRIPSGFIIIKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYE 319 Query: 289 SLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 +K G+ F +LA+ + G +L+ L + + ++G T Sbjct: 320 RIKGGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA--QQGVVTKPFKT 377 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKASEKVKEDYKRLEEFLA 396 +G+ + V + + + ++ ++ A N +R K E+++ +++ + Sbjct: 378 QYGWHVLEVLGRRATDST--EQAREQQAMNVLRNRKYDEELQTWLRQIRDEAY 428 Score = 39.2 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 88/253 (34%), Gaps = 17/253 (6%) Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 KA+ KV + Y++L + G +++ L + + P Sbjct: 200 QKAARKVGDVYQQLRQ----GADFGQMAIANSASENALEGGEMGWRKAAQLP----PEFA 251 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL-EEVLTDVKKDWKTVKTA 496 +LL + D + +P G ++ ++++E + L +EV + + Sbjct: 252 KLLSSMATGD----ITQPLRIPSG-FIIIKLEEKRGGSENVLRDEVHVRHILIKPSEIRS 306 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556 E + + + + E K G++F ++ K+ + ++ + + + Sbjct: 307 EAATEQLAERLYERIKGGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANA 366 Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQ 613 + V P + + V +V + E+ + ++ L + L + + ++ + Sbjct: 367 QQGVVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQAMNVLRNRKYDEELQTWLRQIRDE 426 Query: 614 YSVTVHDNLIQRY 626 V + + Sbjct: 427 AYVEIKLPGADQA 439 >gi|303236785|ref|ZP_07323364.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN] gi|302482953|gb|EFL45969.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN] Length = 407 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 67/436 (15%), Positives = 144/436 (33%), Gaps = 60/436 (13%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE--IR 270 + + D + + + ++Y V E Q Y++ +++ IR Sbjct: 3 VQAALDAKLDTLTSFKQEFMTYRDQQVRPTMITDADIEAEAQKIYKETRDRIEGSGGLIR 62 Query: 271 TVEQLVFPNQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----F 315 L+ QK AD + + KG F +LA++ K S + G Sbjct: 63 CAHILLSAGQKASVAEQKEIADRADSLYNVIMKGGNFAELAKKYSKDPSSAARGGELPLI 122 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 ++ + +++FS+ K G+ + I FGY I + + +K DI + Sbjct: 123 TRGQTV-QAFEEALFSM-KPGEISHPILSPFGYHIIKY--VAKEQFQPYDSLKADIHQFI 178 Query: 376 RITKASEKVKE-DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 E++ + +++ G + ++ ++ L + KD K + Sbjct: 179 EARNLREQIIDQKLQKMATEAGNGVTPQQL--------VEKKLAEMEEKDPNLKNLVR-E 229 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKT 492 Y + LL + K +Y K R + + + Sbjct: 230 YHDGLLLIEMSSREVWDKASNDEAGLQAYFKKHKKHYAWKEPRFK-------GIAYHVQK 282 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDG 548 + + V ++ F+D G+ L + + I R+ E F Sbjct: 283 KEDVKAVKDCVAKI---------PFKDWGEKLRTTFNNDSTI-RIRVEKGLFKQGDNPLV 332 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 ++F + +Y + V K+ +E + S + + L I Sbjct: 333 DKEIFKQNTTVKPV------ENYPIDAVYGKKLKAPEEMNDVRSQVISDYQESLEKEWIK 386 Query: 609 YLKSQYSVTVHDNLIQ 624 L+ +Y+V+V+ ++ Sbjct: 387 ALRKKYTVSVNREVLN 402 >gi|322418770|ref|YP_004197993.1| Dcu family anaerobic c4-dicarboxylate antiporter [Geobacter sp. M18] gi|320125157|gb|ADW12717.1| anaerobic c4-dicarboxylate antiporter, Dcu family [Geobacter sp. M18] Length = 546 Score = 85.0 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 4/95 (4%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 + +V ++ EA + LK G F +A + + LG +K + Sbjct: 273 RISHIVVRSETEAKQVLAQLKSGGSFSDVARQCSIDATAGTGGDLGWQAKGKML-PEFEK 331 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + L K GD T VI FGY + +P+ Sbjct: 332 ACAKLKKPGDLTEVIKSPFGYHVVKFDEKRPAQNK 366 >gi|289522411|ref|ZP_06439265.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504247|gb|EFD25411.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 388 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 53/404 (13%), Positives = 127/404 (31%), Gaps = 98/404 (24%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFI 57 L+ +R ++ + + + + F +G+ D+ + V + S Sbjct: 3 LKALRTRTKVIMIAVAVAFVISIFAGYGIYSRRGDSSATTEKDKVVAKANGTNIMLSQID 62 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW- 116 +Q + + + N +++ L K +LD +V LD+ +++ +E + Sbjct: 63 MGVRQLMDQM-----GISNLPQSQYYILRKHVLDQIVLDMELDKEVKENKIEVTDDEINV 117 Query: 117 ---GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173 I++ P + + L+ I E++ + L++ ++ Sbjct: 118 AMDRIISQFPT---------KEAYQDYLSAYNIKEEDLKKELRRQLAQQKLLQT------ 162 Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 V + + +++E D+Y Sbjct: 163 ---------------------------AVKTDDTVTEEEMQEFYEARGDDY--------- 186 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 + PE V +F ++K A +L G Sbjct: 187 ------------------------------FVRPEGLWVNFAIFSDEKTAQGVRDALASG 216 Query: 294 KKFIQLAEEQG-KSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIH-GSFGYV 349 + + + + G K+L S + + + + L K+G+ + I + Sbjct: 217 QTWDDVMSQYGDKALHSTSYDKPLLLPMTTLEAQEELLPLKELKEGELSRPIQLDEEQFG 276 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I V + + + EVK++I + KA + +E + L + Sbjct: 277 IYLVKGYQKQEKIPYDEVKENIKLALSQQKAQAQRQEYLQGLVD 320 >gi|253581345|ref|ZP_04858571.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725] gi|251836709|gb|EES65243.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725] Length = 584 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 124/312 (39%), Gaps = 57/312 (18%) Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 ++ +P++A L ++FEK K Y + D + K++ S ++ Sbjct: 318 ENIKNSLNPTDAQLKEYFEKNKLVYDT-------FPSADSYIAILKVDPSAED------- 363 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316 + A+E ++L K F ++A++ S + LG FS Sbjct: 364 ----------------KAAAKTRAEELLKTLT-PKNFAEVAKKNSDGPSSPNGGDLGWFS 406 Query: 317 KEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 K+ + + ++F+ + G P + FG + ++ + K E + ++ + Sbjct: 407 KKDMVEP-FQKAVFA-GEVGKIYPEPVETIFGQHLIYIEDRKD------DEERAKASHIL 458 Query: 376 RITKASEKV----KEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 + K SE K + + ++E LA GT + + +S+ K D+ K + Sbjct: 459 IVPKISEATLNTKKAEIETVKEKLANGTVNFETLSKENK----DVLQSTLFSKIDDAGYI 514 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDRKLEEVLTDVKKD 489 + Y E L +F P++ T + D Y++ +I E A D E+ VK+D Sbjct: 515 PGLGYNESLTKLIFAA--PINSVQTALIEDKFYIFKKINEVKYKAAD--FNELKNRVKED 570 Query: 490 WKTVKTAEEVSS 501 + KT EE+ Sbjct: 571 YLNSKTQEELKK 582 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 91/623 (14%), Positives = 198/623 (31%), Gaps = 78/623 (12%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVVSVGRQKVPFSSFI 57 IRK + K + ++ + ++ G L S+ GS + + K+ Sbjct: 9 AIRKFRKQ--MKPIIWLVTILMVLGGGYATLSSIIGSMSNGHSNYAFKLNGNKISKFEVE 66 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + + S+ +G V+ + D +V+ + + + ++ G V Sbjct: 67 KTKVTMIDGYSRYLGDKVDRGLIDIL-----AFDEVVNKNLTLEMADKLKVKVSSGDVNA 121 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + + + + + D F L +G + + L+ + G+ P++ Sbjct: 122 QYDKI-----ESSIGNKDQFKRMLQVQGYTKNTFKKELKDNLTVEKTLAKIQEGINPTD- 175 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ ++Y +N YI + + + + + L Q K + Y K + Sbjct: 176 --EEINKYYEDNL---YIRFSGKPLAEVKNEVITDLKQ--TKGIEEYILLLNKARKEMKL 228 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + +E K + +E++ + RT+ L N Sbjct: 229 ENISEEYKAYVERNEMEE--DGFAISNVEMAKRTLNNLFITNGDREKA-----------R 275 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +L++E K+ ++ + + D +L D F KKG F + S A + Sbjct: 276 ELSKEYYKAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENI-KNSLNPTDAQLKEY 334 Query: 357 KPSFTVSFQE--VKKDIANQMRITKASEKVKEDYKRLEEFLA--LGTSMDEISRREKIVS 412 + + +++ ++E R EE L + E++++ Sbjct: 335 FEKNKLVYDTFPSADSYIAILKVDPSAEDKAAAKTRAEELLKTLTPKNFAEVAKKN---- 390 Query: 413 IDLPLVDFAGKDVKGKEV---AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 G ++ + E VF + V G ++ Sbjct: 391 ------SDGPSSPNGGDLGWFSKKDMVEPFQKAVFAGEVGKIYPEPVETIFGQHLIYI-- 442 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVS--SKAN-QLVLEYSKEGKNFRDIGKNLGA 526 DRK +E K +E KA + V E G + Sbjct: 443 -----EDRKDDEERAKASHILIVPKISEATLNTKKAEIETVKEKLANGTVNFETLSKENK 497 Query: 527 SLLTTNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582 +L + +++D+ G +F+ P+ V+ IE+ Y+ K+ K Sbjct: 498 DVLQSTLFSKIDDAGYIPGLGYNESLTKLIFAAPINSVQTALIEDKF-YIFKKINEVKYK 556 Query: 583 PVQEKDKFISYLTQMMNKDLLDS 605 + L + +D L+S Sbjct: 557 AADFNE-----LKNRVKEDYLNS 574 Score = 41.5 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 21/149 (14%) Query: 256 EYEKNKEKYFSPEIRTVEQLVF----------PNQKEADEAFQSLKKGK-KFIQLAEE-- 302 E K+ E ++ + E + + L G F L++E Sbjct: 441 YIEDRKDD---EERAKASHILIVPKISEATLNTKKAEIETVKEKLANGTVNFETLSKENK 497 Query: 303 ---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 Q S I + + SL IF+ T +I F Y+ ++ +K Sbjct: 498 DVLQSTLFSKIDDAGYIPGLGYNESLTKLIFAAPINSVQTALIEDKF-YIFKKINEVK-Y 555 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDY 388 F E+K + +K E++K+ Sbjct: 556 KAADFNELKNRVKEDYLNSKTQEELKKLI 584 >gi|149177450|ref|ZP_01856054.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris DSM 8797] gi|148843783|gb|EDL58142.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris DSM 8797] Length = 407 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 51/330 (15%), Positives = 113/330 (34%), Gaps = 43/330 (13%) Query: 112 HGRVWGEIARSPLF-HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 V + +PLF + + A + + +EY + L + D+ Sbjct: 92 DSTVVAMVNGTPLFVSDIIGVYDFQLKQ---AEQRMPPEEY-QKLRRALVKRDLKSHIER 147 Query: 171 GMR---PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP----SNAVLTQ-------- 215 + L + E+ + +P + S L + Sbjct: 148 QLLIHEMKTTLKKEQLAMLQEHLD---KAFDEERIPELQKAVGASSPQELEEKLNQQGRS 204 Query: 216 -WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++E K+ + + S + F + + K + S +E+ A Y+ N ++Y P ++ Sbjct: 205 LYYE--KELFMKQQ----SALQFMAVKAKSKNDFSREEVLARYKSNLDEYAYPAKARWQR 258 Query: 275 LVFP-----NQKEA----DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPD 322 + + +A DE L+ G+ F LAE+ + G + + D Sbjct: 259 IRISYAKHGGKDKAVGVLDEVIHKLQAGENFGTLAEKYSDGPRAEKKGQWGWTGRGSLAD 318 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + ++F L G + V + I V + K + F +V+ + M + Sbjct: 319 SEVEAALFELP-VGQTSQVFETDDSFQIVKVIDRKEAGHTPFADVQAQLEQSMVNDARMK 377 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVS 412 +E +L + + + + + EK+ + Sbjct: 378 ATRETLDQLFKKAIIESMFEYETEDEKVTN 407 >gi|120611614|ref|YP_971292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120590078|gb|ABM33518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 265 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +K +++ ++QAEY+K E + ++ + +A S+KKG KF + Sbjct: 109 ADYQKANPVTDADIQAEYDKFVAANTGKEYK-ASHILVETEDQAKSIIASIKKGAKFEDI 167 Query: 300 AEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A++Q K + G P +++ L K + FG+ + + ++ Sbjct: 168 AKKQSKDPGSGARGGDLDWATPSSYVSEFTEALVKLDKGKMTQTPVKTQFGWHVIRLDDV 227 Query: 357 KPSFTVSFQEV 367 + + EV Sbjct: 228 REAKLPKLDEV 238 >gi|20808476|ref|NP_623647.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter tengcongensis MB4] gi|20517095|gb|AAM25251.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter tengcongensis MB4] Length = 264 Score = 85.0 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 16/217 (7%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILF 237 ++ + EN + ++ L + ++ KD + K I Sbjct: 56 EELTKTALENLKAKKA-VEYEAQKEGIAVTDEELNKAWQNIKDKTKLTKEDLKDILLSDK 114 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 ++ K I ++ +E++ YE +K+ Y + V ++ ++ AD +Q LK G+ F Sbjct: 115 LFNKYTKDITVNPEEVEQFYETHKDYYTT---VKVYEISVRDKDTADMVYQKLKSGEDFS 171 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF-GYVIAHVSN 355 +L E+ + G ++ ++ ++ F ++ K I + GY+I + Sbjct: 172 KLFEQYSIDRISGNGG-----FMGEIPVSQKFFGVSLKPDTIYEPIPVNNEGYIILKTTE 226 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 F EVK I + K + + K E Sbjct: 227 ---QIIKPFDEVKDGIELYLLNQKKLDFYHKKIKEWE 260 >gi|302346446|ref|YP_003814744.1| hypothetical protein HMPREF0659_A6700 [Prevotella melaninogenica ATCC 25845] gi|302150324|gb|ADK96585.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 715 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 79/677 (11%), Positives = 197/677 (29%), Gaps = 115/677 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59 L IR S+ + + + FL + + + G + + +K+ + Sbjct: 4 LGKIR--SKGGILVGAIGLALFAFLAGDAARSCDGIKGEARQQIGEILGKKISVQDYQKL 61 Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG- 117 + I + + + ++ ++ LVS ++ E +GL + Sbjct: 62 IDEYQSAIKFTMQRDNLTDQELKQ--VEDQVWQQLVSNRVIEADAEKVGLTVTEKEIQNV 119 Query: 118 -------EIARSPLFHGKDNKFSHDVFVSRLAREG------------INEKE-----YID 153 + ++P + + +F + + Sbjct: 120 LNEGTNPMLVQTPFVNQQTGRFDVNALKQFFDSYNKAKAAKSPQVEQMQPIYDYWLFVEK 179 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAV 212 + L + + + A + E + L V A ++ Sbjct: 180 NLRAQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAYSTVKDADVKVTDDD 239 Query: 213 LTQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 L + + K +R E + I ++ F + Sbjct: 240 LKAKYAELKPAFRQNVETRDIKFVDFQIKASAADRS------------------------ 275 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 KE ++ + L + + G + + L +K Y +A I S Sbjct: 276 ------QVVKEMNDFQKQLASAADPAAVVSKSGSEIPYLGLPVSNKAYQQYPDIASKIDS 329 Query: 332 LAKKGDFTPVIHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKAS------EKV 384 L+ G V + + I V + K +A+ ++ + + ++ Sbjct: 330 LS-VGTTGVVENAQDNTLNIIRVLS------------KAQLADSIQFRQINIAAATPDEA 376 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++ LA G D +++R + + + LL Sbjct: 377 RAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALL---- 432 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + ++ +AL G+ + +Q+ + + V+ V ++ S A Sbjct: 433 --NGEVNATQNLALTQGNII-LQVLDKKAFTTKTTAAVIKKVVDF------SKATRSNAY 483 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEM 559 E+ + D+ KN S +N + + G +D + +F Sbjct: 484 NKFSEFVAKSSTVADLEKNAPKSGYQVQSLNDISTAEHYVGGIPGTHDALKWLFEAKQGE 543 Query: 560 V-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS-----VIAYLKSQ 613 V + N +V +T P + + + +++ ++++ ++A LK Sbjct: 544 VSPLYECGNNDHLLVIALTAVH--PQGYRSWDDAQVKEILKREVIKDKKAEKLMAKLKG- 600 Query: 614 YSVTVHDNLIQRYLDGE 630 V+ + + Sbjct: 601 ----VNSIAAAQAKGAK 613 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 116/348 (33%), Gaps = 24/348 (6%) Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKG 336 + +AD ++L G F LA+ G++ + E P ++ + F + G Sbjct: 375 EARAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNG 434 Query: 337 DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + + G +I V + K T + V I + +KA+ Y + EF Sbjct: 435 EVNATQNLALTQGNIILQVLDKKAFTTKTTAAV---IKKVVDFSKATR--SNAYNKFSEF 489 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 +A +++ ++ + + ++ V IP L +F Sbjct: 490 VAKSSTVADLEKNAPKSGYQVQSLNDISTAEHY--VGGIPGTHDALKWLFEAKQGEVSPL 547 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + + + + P R ++ VK+ K + KA +L+ + +G Sbjct: 548 YECGNNDHLLVIALTAVHPQGYRSWDD--AQVKEILKREVIKD---KKAEKLMAKL--KG 600 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGL 569 N + GA + + NQI + SG V P++ Sbjct: 601 VNSIAAAQAKGAKVSSVNQIT-FAAPAFVQATGSVEPALSGAVAGTAAGKFSKAPVKGNA 659 Query: 570 SYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 VF+V S + + + N L+ + + L + V Sbjct: 660 GVYVFQVVKKSMRAGSKYDETLVMQQAAQANMQLVGNFMQDLILKAKV 707 >gi|167590259|ref|ZP_02382647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ubonensis Bu] Length = 452 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 122/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V ++ R+ ++L+ +V Sbjct: 40 DEVVAVVNNDVITGRELDQRVGLISRRLKQQNAPVPPLDQMRA-----QVLNQMVLERIQ 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D V + R + N + D + +R+ +G+ + L Sbjct: 95 VQKAKDDGIRIDDAAVQSTLQRL----AQANGMTLDQYRARIEAQGVPWSVFTGDARTEL 150 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-----FENRSVDYIVL--------NNRHVPAI 205 + + V + S+ + + + + + + + A Sbjct: 151 MLSKLREREVDSKITVSDAEVASYIASQRGPSASQQQDLRFQHIFVKAPTSAPQADIEAA 210 Query: 206 ADPSNAVLTQ---------WFEKYKDN----------YRAP-----EYKRISYILFDVHE 241 ++A+L Q + + +++P + + L Sbjct: 211 QKKADALLKQAQSGADFERLAKNNSEADDAKKGGDLGFKSPGALPADVVAAASQLRPGQV 270 Query: 242 KEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQKEADE---------A 286 I + + E+ ++ + + S V ++ + E Sbjct: 271 NPTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDI 330 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 331 RKQVEAGGDFAKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNNL-QDGQVSIPVR 388 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + S S Q+ + KA + + + L + Sbjct: 389 TEYGYHLIQVLERRESEG-SVQQQMDIARQAIGQRKAEQAYADWLRELRD 437 >gi|295425340|ref|ZP_06818043.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus amylolyticus DSM 11664] gi|295065116|gb|EFG56021.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus amylolyticus DSM 11664] Length = 302 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 28/239 (11%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYF-ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V + GG D+ K+ ++ + I+ + + S++ + + + YK Sbjct: 32 VASYKGGKITQQQYYDEMKKSQSGQSTLANMIIYRALNEQYGSKVSSSEVNKQYNNYKKQ 91 Query: 224 Y------------RAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 Y P + + L + +++ + + ++ + K Sbjct: 92 YGSQFSAVLQQNGMTPSSFKQNLKTNLLSEAALKDIKKVTKAQEKKAWKTYQPK------ 145 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVS 324 TV+ ++ + A + + LK GK F LA++ + + S + D S Sbjct: 146 VTVQHILVSKKSTAQKIIKELKAGKSFASLAKKYSLDTATKNNAGKLPAFDSTDTTLDPS 205 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + F L + + GY + + IK +F E KK I N + + A ++ Sbjct: 206 FKTAAFKLKTGEVTSTPVKSQSGYHVIKM--IKHPSKGTFAEHKKTIDNLIYASMAQDQ 262 Score = 44.6 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 48/171 (28%), Gaps = 33/171 (19%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 S SSTV S K+ + + + + L N++ Sbjct: 25 SNGSSSTVASYKGGKITQQQYY--------------------DEMKKSQSGQSTLANMII 64 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L++ G + V + + + F + L + G+ + + Sbjct: 65 YRALNEQ---YGSKVSSSEVNK---QYNNYKKQYGS----QFSAVLQQNGMTPSSFKQNL 114 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 L + + +A + Y +V +I+++ + Sbjct: 115 KTNLLSE---AALKDIKKVTKAQEKKAWKTYQPKVTVQHILVSKKSTAQKI 162 >gi|94985701|ref|YP_605065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus geothermalis DSM 11300] gi|94555982|gb|ABF45896.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus geothermalis DSM 11300] Length = 635 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 47/373 (12%), Positives = 105/373 (28%), Gaps = 97/373 (26%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 + + + V Q V + ++ ++ + + L + Sbjct: 25 VGALFGRRQAGTPALKVNGQTVTAEELE-AIRRSFPALAGFESGPLADD------LKTYV 77 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 + L Q +D ++ V E+ + +N + + L G+ + Sbjct: 78 VAQKARQVLLIQAAKD--IKVSRADVNAEVQKV---RQANNLTDNKAWTDALQSAGLTDA 132 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209 + L+ P+ + Sbjct: 133 TFRQQVRDQLAVQRKSEEIQQAAPPA---------------------------------T 159 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 +A ++E + +++++ Sbjct: 160 DAEARLYYELHPESFQS----------------------------------------DAR 179 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-------EEQGKSLSDISLG---SFSKEY 319 ++V ++ +A+ + ++ G F QLA E+G +L + G ++ Sbjct: 180 IVGREIVVNDKAKAEALLKQVRGGADFAQLARQNSSEFAERGGALGPLENGRPRPVARVA 239 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 +PD +A + F+L G T VI + I V P T F + K D + K Sbjct: 240 LPD-EVAAAAFALT-GGGVTDVIASGGKFYIVKVEQYLPPQTKPFADAKADAVTAVNRQK 297 Query: 380 ASEKVKEDYKRLE 392 V++ LE Sbjct: 298 KDAAVEQWLTNLE 310 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +++++ ++Q Y +N +++ +P TV + F ++ +A QS F Sbjct: 409 AYGARNVQVTDADIQKFYLQNPQQFETPASATVSEASFADRDKALAFRQSWNGQGDFTAA 468 Query: 300 AEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAK-----KGDFTPVIHGSFGYVIA 351 A + G ++S+ + + + ++F+ +G + V+ YV+A Sbjct: 469 ATKAGATVSERGEVRPSTPETPGTLAQPVEAAVFTAKTLRPAGEGSLSDVVKVGNRYVVA 528 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-ISRREKI 410 +V++++ + V+ I Q+ K E + + L ++ + ++ ++K Sbjct: 529 YVTDLQRASVQPLAAVRDQIRQQLLTQKREEAGQAYLAQQVAALKPVNNLQKVLADQQKR 588 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 V+ + P +G + G P S + T Sbjct: 589 VAAEAPKTPATEGGAEGSAGSNTDTNGSAGQGATGSSAPKSSEGT 633 Score = 41.1 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 35/149 (23%), Gaps = 3/149 (2%) Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + A P + + + V Y+ + + A + L Sbjct: 484 PSTPETPGTLAQPVEAAVFTAKTLRPAGEGSLSDVVKVGNRYVVAYVTDLQRASVQPLAA 543 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEY---SKEGKNFRDIGKNLGASLLTTNQINRMD 538 V +++ T K E + Q V + K D K + A T Sbjct: 544 VRDQIRQQLLTQKREEAGQAYLAQQVAALKPVNNLQKVLADQQKRVAAEAPKTPATEGGA 603 Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIEN 567 + D G E Sbjct: 604 EGSAGSNTDTNGSAGQGATGSSAPKSSEG 632 >gi|283783842|ref|YP_003363707.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase) [Citrobacter rodentium ICC168] gi|282947296|emb|CBG86841.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase) [Citrobacter rodentium ICC168] Length = 428 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 109/369 (29%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA + N Sbjct: 54 SQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----ARQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA +G+N Y + K + ++V + ++ + Sbjct: 110 TLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRVTILPQEVEALAQQVGNQND 169 Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224 I++ P S A + + Sbjct: 170 ASTELNLSHILIPLPENPTSDQVSEAEAQARSIVDQARSGSDFGKLAIAYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274 R E I +K + + K + + Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDMRGQNQSISVTEVHARH 289 Query: 275 LVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIP 321 ++ +++ ++ +K GK F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDQQARQKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ + KG + +H SFG+ + + + + S + K + K S Sbjct: 350 DPAFRDALTRM-NKGQISAPVHSSFGWHLIELLDTR-SVDKTDAAQKDRAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 >gi|16127297|ref|NP_421861.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter crescentus CB15] gi|13424717|gb|AAK25029.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter crescentus CB15] Length = 314 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 69/177 (38%), Gaps = 6/177 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ D ++ Y + ++ E Q++ +Q EA+ + L G F LA E+ Sbjct: 121 AVTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEAESIKKLLATGASFDALAMERSTD 180 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG F+ + +P+ + A+KG G+V+ V + + + Sbjct: 181 QATRFNGGDLGYFTLDVMPEAYG--AALKDAQKGALIGPFAAEGGWVLVKVEDKRTEEPI 238 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 + + + I + + + +++ + + +G S + + + + P + Sbjct: 239 TLEAARPQIIRFLTYDQVRDILEKLRGSAKVEMMIGKSQELPAGSAQEPASAPPELQ 295 >gi|240142444|ref|YP_002966954.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens AM1] gi|240012388|gb|ACS43613.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium extorquens AM1] Length = 266 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 21/224 (9%), Positives = 75/224 (33%), Gaps = 23/224 (10%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL-NNRHVPAIADPSNAVLTQ 215 + + + V + + + + + + VD +L + + ++ P+ Sbjct: 33 RAVQTAQLREAAVRFAQRLAGVPEVRRAGFIAGQVVDVAILSDAARLEGVSPPTVDADRD 92 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + + +++ K+ ++++ Y+ + Sbjct: 93 Y------------GRDSQAAQAMLNKIVKESAPEESDVRSAYDAQVPGL----EYRARHI 136 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS 331 + +++A A + G++F +A + LG F ++ + ++ + Sbjct: 137 LVATEEQALAARGRIVAGERFEDVARSVSSDRSTVPAGGDLGWFLRDRMV-PEFGTAVAA 195 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 L+ G + + FG+ + + +P ++ + + Q+ Sbjct: 196 LS-PGALSEPVRSQFGWHLIRLDETRPQTIPPYENDAQRVRAQL 238 >gi|167950935|ref|ZP_02538009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 79 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML+ IR ++ W+A ++++ +PF +WG+ + L V SV +++ + Sbjct: 1 MLQAIRDKAQGWIAWAIVILISIPFALWGIQEYL-GAGAEPVVASVNDEEITERDLDQRF 59 Query: 61 KQELGMISQKIGFVV 75 + +++G Sbjct: 60 NTFRQQLRERLGAAY 74 >gi|332140206|ref|YP_004425944.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype'] gi|327550228|gb|AEA96946.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype'] Length = 427 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 43/366 (11%), Positives = 111/366 (30%), Gaps = 57/366 (15%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 V + Q V S I++ QE+ + + S+RA L + ++ L++ + Sbjct: 26 DRVAVIVDQGVVLESEIDALVQEVKRNAAANDQQLPSDRA----LRTQAIERLITKSLQL 81 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q E +G+ ++ I + ++LA EGI +Y + + + Sbjct: 82 QMAERMGIRISDPQLEQTIGNIASNQNAT----VEQLRAQLAAEGIAYDDYREDIREEII 137 Query: 161 R-TDVVGMFVGGMRPSNLLLDQAKRFYFEN-RSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + ++ + L + + +P++ + E Sbjct: 138 MGEVRRANVRRRVYITPQEIETLVDLMEQQGAQQAEYRLGHILIGFPPEPTDEDIQAARE 197 Query: 219 ---------KYKDNY-----------RAPEYKRISYILFDVHEKEKKIEISNDE------ 252 + ++ A E + ++ + I N + Sbjct: 198 RADKVIALLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMPTLFAEAIQNKDKDALVG 257 Query: 253 ---------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAF----QSLKKGK 294 + + + + E ++ ++ +A + LK G+ Sbjct: 258 PIRSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSEDKAKAMLTRFKEELKNGE 317 Query: 295 K-FIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIA 351 F LA+E + G P + + S + G+++ + G+ + Sbjct: 318 AEFADLAKEHSEDPGSALRGGELGWSDPGNYVPEFKEALSQLEPGEYSDPVRTVHGWHLI 377 Query: 352 HVSNIK 357 + + + Sbjct: 378 QLIDRR 383 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 20/238 (8%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277 D+YR + I +++ I+ E++ + +++ + ++ Sbjct: 126 DDYREDIREEIIMGEVRRANVRRRVYITPQEIETLVDLMEQQGAQQAEYRLGHILIGFPP 185 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326 ++ AD+ L+ G F ++A +L +G + +P A Sbjct: 186 EPTDEDIQAARERADKVIALLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMP-TLFA 244 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVK 385 ++I + K I G+ I V + + V+ +EV I + I + +K K Sbjct: 245 EAIQN-KDKDALVGPIRSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSEDKAK 303 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 R +E L G E + K S D G+ +P ++ L ++ Sbjct: 304 AMLTRFKEELKNGE--AEFADLAKEHSEDPGSALRGGELGWSDPGNYVPEFKEALSQL 359 >gi|330863030|emb|CBX73162.1| chaperone surA [Yersinia enterocolitica W22703] Length = 424 Score = 84.7 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 66/404 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + +Q+ G V L +IL+ L+ Sbjct: 16 DKVAAVVDNGVVLQSDVDGLLQS-VKLNAQQAGQQVP----DDATLRHQILERLIMDNIQ 70 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + IA N+ + SRLA +G+N Y + K + Sbjct: 71 LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 126 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWF 217 ++V + ++ + S D + L++ +P +PS + Q Sbjct: 127 LTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQQVDQ-A 185 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE- 268 E + + + + EL + + + + + Sbjct: 186 EDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSASKGDV 245 Query: 269 ----------------------------IRTVEQLVFP---------NQKEADEAFQSLK 291 ++ + + A +K Sbjct: 246 VGPIRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIK 305 Query: 292 KGK-KFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 GK F +A+E G ++ LG S + I D + D++ L +KG+ + +H SF Sbjct: 306 SGKANFATIAKEISQDPGSAMQGGDLGWASPD-IYDPAFRDALMKL-QKGEISAPVHSSF 363 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + V + + + K + K +E+ + + Sbjct: 364 GWHLIQVVDTR-QVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQE 406 >gi|119775949|ref|YP_928689.1| survival protein surA [Shewanella amazonensis SB2B] gi|119768449|gb|ABM01020.1| survival protein surA [Shewanella amazonensis SB2B] Length = 434 Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 48/399 (12%), Positives = 120/399 (30%), Gaps = 65/399 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K+ L + G V V V S N G Sbjct: 6 KLIFAALAMTM---GFQSLAAPQPLDRVAVQVNDGIVLESEIQNMMDTVKKNALA-AGQT 61 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + S+ A L ++++ L+ Q E +GL ++ I K + Sbjct: 62 LPSDDA----LRTQVIERLILTRLQLQMAERVGLHIGDLQLDQAIENIAREQ----KMTV 113 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RS 191 + EG++ +Y + + ++ ++ ++ S ++ + E + Sbjct: 114 AQMQQAIQAEGMSFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKMIEEQGNKD 173 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYK---------DNYR-----------APEYKR 231 V+Y + + + ++P++A L ++ + +++R A E Sbjct: 174 VEY-QIGHILIEVPSNPTSAELESASKRAQAVMDRLNSGNDFRSIAIAASSGPKALEGGV 232 Query: 232 ISYILFDVHEKEKKIEISNDELQAEY---------------EKNKEKYFSPEIRTVEQLV 276 Y+ + I + + A + + E ++ Sbjct: 233 WDYMNINEMPTLFAEVIGDAKKDAIIGPIKSGSGFHILKIMDIRGLQTREIEEVRARHIL 292 Query: 277 FP-----NQKEADEAFQ----SLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDV 323 +++ A +K G+ KF +A + + + G +++ I Sbjct: 293 LKPSPILSEERAKAMLDQFVTQIKSGEAKFADIARQYSEDPGSATKGGELGWAEPNIYVP 352 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 A + L+ + + + G+ I + + + Sbjct: 353 EFAQMLGQLSLD-EISAPFRTAHGWHIVQLEEKRKTDAT 390 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 99/306 (32%), Gaps = 37/306 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQA + + V + A Sbjct: 75 RLILTRLQLQMAERVGLHIGDLQLDQAIENIAREQKMT--------VAQMQQAIQAEGMS 126 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + YR + I+ + +++I++S E+ + +E+ + + Sbjct: 127 F-----AQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKMIEEQGNKDVEYQIGHI 181 Query: 276 VFPNQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322 + K A L G F +A + G + I + Sbjct: 182 LIEVPSNPTSAELESASKRAQAVMDRLNSGNDFRSIAIAASSGPKALEGGVWDYMNINEM 241 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRI 377 +L + AKK I G+ I + +I+ T +EV+ + + Sbjct: 242 PTLFAEVIGDAKKDAIIGPIKSGSGFHILKIMDIRGLQTREIEEVRARHILLKPSPILSE 301 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +A + + +++ + +I+R+ S D G+ + +P Sbjct: 302 ERAKAMLDQFVTQIK---SGEAKFADIARQY---SEDPGSATKGGELGWAEPNIYVPEFA 355 Query: 438 QLLFRV 443 Q+L ++ Sbjct: 356 QMLGQL 361 >gi|332284989|ref|YP_004416900.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp. T7-7] gi|330428942|gb|AEC20276.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp. T7-7] Length = 258 Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFI 297 + + KK +++ ++QAEY+K K+ + V ++ +QK A++ ++K K F Sbjct: 99 MADHLKKNPVTDAKIQAEYDKIKKLQADKQEYKVRHILVKDQKAAEDLTAAIKSKKVTFE 158 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 A++ G ++ AD++ L K + FG+ I V Sbjct: 159 AAAKKDSIDPGSGKNGGDLGWAPSTNYVPEFADAVEKLKKGQMTDKPVQSQFGWHIIQVD 218 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASE 382 + + EVK I +R + +E Sbjct: 219 DTRDVKFPELAEVKPQIEEMLRQQQLAE 246 >gi|84514873|ref|ZP_01002236.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53] gi|84511032|gb|EAQ07486.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53] Length = 270 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 5/149 (3%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 + I+ + LQ Y+ L+ + EA+ A L G+ F +A Sbjct: 101 QTSINQELLQEAYQDRFADAPETPEFRAAHLLVATEDEANAAKAQLDAGEAFADVAAAVS 160 Query: 305 KS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + LG F + + ++ +L + + + FG+ I +++ + Sbjct: 161 TDVTSANGGDLGWFGAGAMVE-EFETAVMAL-EIDEISDPFETQFGWHIVTLTDQRARPA 218 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 +F++V + ++ +++ + E Sbjct: 219 PTFEQVVQQLSAELQEAAVIAYLDELSAA 247 >gi|15806083|ref|NP_294787.1| peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1] gi|6458794|gb|AAF10636.1|AE001957_4 peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1] Length = 344 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 47/360 (13%), Positives = 100/360 (27%), Gaps = 87/360 (24%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSG 96 S + V VG Q + + F S++ + + G ++ + + L V Sbjct: 51 SPDAVVARVGNQTLTLADFDRSFRVAVAGVVNAQGLPLSDDLLAEFASSRPEYLKQFVRE 110 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L Q ++ D + ++A + S F L + G D Sbjct: 111 QALTQLA-RASVKPDAAAIDAQLA-----QARAGFGSDADFQQALTQTGYGSA---DDLR 161 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L R V+ ++ + + R +A++ + Sbjct: 162 AGLERQAVIAPYLQSV---------------QKR---------------FTFGDAIVNGY 191 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + ++D + V+ ++ Sbjct: 192 YNLHRDAFTR----------------------------------------DAEACVKHIL 211 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 + EA L GK F +A+ + G + LG + + + FS Sbjct: 212 VATEAEAKTIVTDLSAGKDFAAVAKAKSQDPGSAAEGGDLGCIAPGDTV-AAFDKASFSG 270 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 V+ +G+ + VS + + E I Q+ A + + R++ Sbjct: 271 PLNQP--QVVQTEYGWHVLTVSRRSAAGLLPLTEAAPLIREQLSREAAQKYLDAQIARIK 328 >gi|294671290|ref|ZP_06736142.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307017|gb|EFE48260.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 320 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 61/383 (15%), Positives = 120/383 (31%), Gaps = 80/383 (20%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI L F + + +V G + V G + F + Q + + + Sbjct: 5 KILTAALLACFFQTASAADIKTVDGVAAVA--GDSVITMRQFEQAVAQARRLPAAQRPP- 61 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 L +++L L++ + + Q + GL A V +A + K S Sbjct: 62 -------ENELRQQVLAQLINQSLIVQAGKRRGLAATQAEVDEAVAHAAAEQ----KISV 110 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVD 193 D +R A++G+++ L V + R S +D A + Sbjct: 111 DQLYARAAKDGLSKAALRRQTADALVAQKVQQQAILQNARVSEAEVDAALARAQQQ---- 166 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 +A P +AP R +IL Sbjct: 167 ----------GVAIP--------------EGKAPRQYRAQHILIKAE------------- 189 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDI 310 KE + + ++ +K G+ F +LA + G + Sbjct: 190 -------KENAVAAAETVINKIRAQAEK-----------GRDFGELARQYSQDGSAPQGG 231 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 LG F + ++ L KKG + + FG+ + +++++ T + + Sbjct: 232 DLGWFGDGMMV-PEFESAVQKL-KKGQVSRPVRTQFGWHLIKLNDVREVGTPE-ERRRNT 288 Query: 371 IANQMRITKASEKVKEDYKRLEE 393 I + KA + + ++L E Sbjct: 289 IRQYIMQQKAEQAAGQLLQQLHE 311 >gi|262198047|ref|YP_003269256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum DSM 14365] gi|262081394|gb|ACY17363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum DSM 14365] Length = 349 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 99/361 (27%), Gaps = 73/361 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + S ++ + R L + LD ++S + Sbjct: 53 DRVAAVVNDSVILTSELDARLAPLTAGLANINDERERARRGEQ--LRSQQLDEMISEELV 110 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q L D V +A + G+++ + + Sbjct: 111 VQEARKSKLNVDDKEVSAALAEIK------------------QQNGLDDTQLAAALAQQG 152 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + +R R+++ +V ++ + ++ Sbjct: 153 YSMQ-------------AYRKEVERQLLHRRAINMLVRP------RVTVTDEDVRVRYDT 193 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 A R+ + L + +L+ Sbjct: 194 MSRRSAAVSKVRLKHALLSLPPNPSN----------------------------ELLAEA 225 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335 + +A ++++ G F A + + S LG + I +FS+ ++ Sbjct: 226 KSKAAAIVEAVRGGASFDDQARQYSDDINTRDSGGDLGWIERGSIA-TEWEVIVFSM-EE 283 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + G G + +V + S F VK+ + +++ + +++ + L + Sbjct: 284 GEVRGPVSGPGGLHVFYVEELAKSDLEEFDAVKEQLQSEIYREEMDKEITAWLQELRDKA 343 Query: 396 A 396 Sbjct: 344 F 344 >gi|197286178|ref|YP_002152050.1| peptidyl-prolyl cis-trans isomerase SurA [Proteus mirabilis HI4320] gi|194683665|emb|CAR44613.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase) [Proteus mirabilis HI4320] Length = 436 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 115/382 (30%), Gaps = 59/382 (15%) Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + Q E L ++IL+ LV + Q + + ++ V I Sbjct: 47 NRMLQTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQG 106 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180 +N + + RLA +GI +Y K + +V + +D Sbjct: 107 IAA----ENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVD 162 Query: 181 QAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + S + L++ +P +PS A + + ++ + + + Sbjct: 163 SLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEK-AQQVVNRIKNQLKNGADFGKLAA 221 Query: 240 HEKEKKIEI--------SNDELQAEYEKNKEKYFSPE----------------------- 268 + S DEL + K E Sbjct: 222 TYSADPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGAS 281 Query: 269 ------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISL 312 ++ N ++A + ++ GK F A+E + Sbjct: 282 KTVSVTEVKARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALR 341 Query: 313 GSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G +P D + D++ L K + + + +FG+ + + + + S + K+ Sbjct: 342 GGELGWSMPDIYDPAFRDALMRLNKN-ELSQPVRSNFGWHLIELEDTR-SVDKTDAANKE 399 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + K +E+V+ + L Sbjct: 400 QAYRLLFNRKFNEEVQNWMQEL 421 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 23/282 (8%) Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY----IVLNNRHVPAI 205 + + K + + L++D + +D + + + A Sbjct: 51 QTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQGIAAE 110 Query: 206 ADPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 + + L + ++YR K + +E ++I I E+ + ++ + Sbjct: 111 NNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIES 170 Query: 263 KYFSPEIRTVEQLVFP-----NQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDI 310 + + ++ P + E ++A Q LK G F +LA + Sbjct: 171 QASQSIDLNLSHILIPLSENPSPAEIEKAQQVVNRIKNQLKNGADFGKLAATYSADPQAL 230 Query: 311 SLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVK 368 + G+ I + ++ + A+KG+ + G I V++I+ S TVS EVK Sbjct: 231 NGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVSVTEVK 290 Query: 369 KD-IANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRRE 408 I + E+ +++ + + S + ++ Sbjct: 291 ARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEY 332 >gi|146339244|ref|YP_001204292.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] gi|146192050|emb|CAL76055.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] Length = 308 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 20/181 (11%) Query: 247 EISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKE------------ADEAFQSLKKG 293 +S + ++ YE K S + + LVF + A A + LKKG Sbjct: 129 AVSEETVRKAYEDVVLKAASEQTEVHLRHLVFLTKDAPDDAARKAIEARAQAALERLKKG 188 Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F +A E G + + AD+ F + K GD +P+I G Sbjct: 189 EDFAAVATETSDDPVTKSRGGDFGWRIRPELSK-EYADAAFEM-KNGDISPLIKTGVGLH 246 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRRE 408 I + + + F V++ +A + T E V + + E G S+ ++ Sbjct: 247 IIKLEDRRTRRPPEFDTVRERVAAMVSATAQIELVDKARAAAKIERFDGGASIAPTAQPS 306 Query: 409 K 409 K Sbjct: 307 K 307 >gi|163753204|ref|ZP_02160328.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1] gi|161326936|gb|EDP98261.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1] Length = 701 Score = 84.3 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 87/638 (13%), Positives = 201/638 (31%), Gaps = 91/638 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS----TVVSVGRQKVPFSSFI 57 L IR+ RT V + + + F+ +SD + G + +V + +P F Sbjct: 4 LAKIRQ--RTLVLILIIGLALFAFV---ISDVFNNNGGGDKRPTEMGTVNGENIPLQQFQ 58 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 N + ++ R ++ + + D V A + Q ++++G+ + +W Sbjct: 59 NQVE---------YAKNLSRGRQTTMQIVNSLWDEEVKNALITQQLDELGITIEKDEIWN 109 Query: 118 E------IARSPLFHGKDNKFSHDVFVSRLARE-------GINEKEY------IDHYTKM 158 I SP F + F + ++ EY + + Sbjct: 110 LLITSPNITSSPQFQDESGTFVEGKLREYVNNLEAKRNLDDQSKAEYNNWVATEQYTIRE 169 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWF 217 + + G + + A R + + Y+ + + + + + + + Sbjct: 170 AKKALYYNLVKAGSIATVKEGEMAYRMENDKVTFKYVQIPYTSIADSLVEVRKSDVQNYI 229 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E +K + E + I Y+ F + Sbjct: 230 ENHKSEFEVKESRDIQYVFFPETPSK---------------------------------- 255 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS-FSKEYIPDVSLADSIFSLAKKG 336 +++EA + + KKG + A ++ + + F+ ++ I ++ + G Sbjct: 256 SDEEEAKQMVEDYKKGLAAAEDANAYANEYTETNESTAFTYSSQLPADISSEIMAM-EVG 314 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 D Y I+ + VK +R ++ + + EE Sbjct: 315 DVYGPYKVGNQYKISRLVETSKLP----DSVKSR-HILIRFAGSAGAQPDLKRTKEEAKK 369 Query: 397 LGTSMDEISRREKIVSIDL-PLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKD 453 S+ I +R K D+ + KG ++ L F+ F ++ Sbjct: 370 TADSILTIVKRNKSKFADIAKEISDDTSKDKGGDLGWFTGATALTPTFKEFVFENETGDM 429 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 V P G ++ + + KL + V+ T +T ++ + +++ + K Sbjct: 430 GVVESPFGFHVIEIEDQKNEQKVVKLATINKQVE---VTEQTLNDLFTTSSKFESDAGKS 486 Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSY 571 F ++ K + N+I +D + I F E+ G + Sbjct: 487 DDAFVNVAKERNYDVNPVNRIKELDASLAGMPQQREVIRWTFEEDTEVGDIRRFSVGSGF 546 Query: 572 VVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDS 605 +V +VT + + + L +++ + Sbjct: 547 IVVQVTAKHAAGLASVEEASARVLGTLRNKKKAEMIKA 584 Score = 44.2 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 74/235 (31%), Gaps = 30/235 (12%) Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFG- 347 K F+ +A+E+ ++ ++ + + + + + + + S G Sbjct: 485 KSDDAFVNVAKERNYDVNPVNRIKELDASLAGMPQQREVIRWTFEEDTEVGDIRRFSVGS 544 Query: 348 -YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 +++ V+ + S +E + +R K +E +K + A ++ E++ Sbjct: 545 GFIVVQVTAKHAAGLASVEEASARVLGTLRNKKKAEMIKANN-------AGSKTLAELAS 597 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + + +++++ F D + + Sbjct: 598 AAGKA-----EQQATSLSMAAPIIPGAGAEKKVVGAAFALDKGATSGLIE--GRTGVFMI 650 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVK--TAEEVSSKANQLVLEYSKEGKNFRD 519 Q+ ++V K + T + ++KA V+E K D Sbjct: 651 QVV----------DKVEAPAKDTYLTEMNTLRNQRATKATSSVVEALKSSSEIED 695 Score = 41.5 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 259 KNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317 K+ S E + L N+K+A+ + K +LA GK+ + S + Sbjct: 554 KHAAGLASVEEASARVLGTLRNKKKAEMIKANNAGSKTLAELASAAGKAEQQATSLSMAA 613 Query: 318 EYIPDVSLAD----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS--FQEVKKDI 371 IP + F+L K G + +I G G + V + + E+ Sbjct: 614 PIIPGAGAEKKVVGAAFALDK-GATSGLIEGRTGVFMIQVVDKVEAPAKDTYLTEM---- 668 Query: 372 ANQMRITKASEKVKEDYKRLE 392 N +R +A++ + L+ Sbjct: 669 -NTLRNQRATKATSSVVEALK 688 >gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium sp. Marseille] gi|151280896|gb|ABR89306.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium sp. Marseille] Length = 307 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 16/171 (9%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------- 279 + +S + + S+ E++A YE+ K + P V Q+ + Sbjct: 115 RIVSTSYLESVAQVPATYPSDAEVKAAYEQGKANFNLPASYRVAQIYLASTGTDAAATTK 174 Query: 280 -QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKK 335 + EA + +G F LA + + G + D++ L K Sbjct: 175 LRDEAKKLATQ-ARGGDFAALARSRSQDPRSAERGGEVGMLPLEQMLPEVRDAVAKL-KV 232 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 G + + G+ I + +P+ T + +E+K + +R + + ++ Sbjct: 233 GQVSEPVQSPSGFHIVKLLETQPARTATLEEIKPRLQTALRDQRQQQLIQA 283 >gi|220904185|ref|YP_002479497.1| SurA domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868484|gb|ACL48819.1| SurA domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 311 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 46/359 (12%), Positives = 101/359 (28%), Gaps = 89/359 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V Q + + ++ ++++ + + +K+LD ++ + Sbjct: 25 NKVAAVVNGQVITMFDLQKNALPDMARARLNPDNPADAKQVDA--IFRKVLDMMIMDILI 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + + + EIA+ + F +LAR+ + E + K L Sbjct: 83 AQEARRLKVSVSPADIDNEIAKLMQGRN----MTKQQFEEQLARQKSSVAELRGNIEKSL 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ M V + + ++E Sbjct: 139 LRQKIMSM---------------------------------EVGRKVVVTPEEIRAYYEA 165 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +KD Y++N +V+ Sbjct: 166 HKD--------------------------------TMYDRNGLHMGV--------MVYSP 185 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKG 336 + A ++ G F + A + + + G + + + + K G Sbjct: 186 KVNAASIAAQIRSGALTFEEAARKYSIAPNKEKGGDMGPVEWDRLNPEWEGRLTKM-KPG 244 Query: 337 DFTPVIHGSFGYVIAHVSNIKPS----FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 D T + A V +P +S +E K I +R KA E+ + +L Sbjct: 245 DVTELFDLQG--HKAQVHLFRPGGGGVKMLSLEEAKPQIDAILRQPKAMERFDDYTGQL 301 >gi|260909468|ref|ZP_05916172.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472 str. F0295] gi|260636393|gb|EEX54379.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472 str. F0295] Length = 474 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 130/393 (33%), Gaps = 50/393 (12%) Query: 250 NDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKF 296 + Y+ +++ + V ++ ++A D + +LK+G F Sbjct: 107 EKAARQLYDDTRQRVDGQGGLIRVAHIMLMLPQKASKEAQNRAELRIDSIYNALKRGADF 166 Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA ++G + L K D+ F+L K G+ + + GY + Sbjct: 167 ATLARKLSDDKGSAQQGGELPWLQKGQTLK-EFEDAAFAL-KPGEISKPVLSPAGYHVIK 224 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEISRREKI- 410 + + + + VK DI + + E++ + + + L + ++ + K+ Sbjct: 225 LIERR--MFLPYDSVKADILAYIEQSGMREQIIDNKLNEMAKALGTTRTTADVLQERKVQ 282 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 + P + + ++ + + + ++ L + + Y W Sbjct: 283 LEAKDPALKYLIQEYHDGLLLYEVSNRAVWEKAAKDEEGL--RYYFSKNKKRYAW----- 335 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 +E + +KA+ ++ + F + + L + Sbjct: 336 ---------DEPRFKGIACY--------AKTKADFKAVKKLVKKLPFSEWNEALRKAFNN 378 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 + I R+ E F S V + IE + + V K+ +E D Sbjct: 379 DSTI-RIKVERGMFKPGDNSLVDR--DAFKRTVSIEMNPEFPIVGVIGKKLKAPKEMDDV 435 Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + + + L + L+ QY V V++ ++ Sbjct: 436 RALVVADFQETLEKEWVKDLRKQYKVEVNEAVL 468 >gi|149372555|ref|ZP_01891667.1| possible peptidyl-prolyl cis-trans isomerase [unidentified eubacterium SCB49] gi|149354598|gb|EDM43162.1| possible peptidyl-prolyl cis-trans isomerase [unidentified eubacterium SCB49] Length = 653 Score = 84.3 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 49/361 (13%), Positives = 117/361 (32%), Gaps = 61/361 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S ++++ V + F+ +++ L ++ + V+ LD V Sbjct: 24 SDVIMTIDGNPVYANEFVRVYQKNLELVQDESQKSVD-----------GYLDLFVDYKLK 72 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + GL + D + + +L+R + Y D T L Sbjct: 73 VAEAYEQGLNNND----------------DYRKEFSKYEEQLSRNYL----YEDKVTTDL 112 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++ ++ +++L+ + ++ Y + A + L + + Sbjct: 113 AKLAYERGKYD-LKVAHILVRSSYDDVPQDTLKAYNKIKEALDKARSGEDFGTLAGTYSE 171 Query: 220 YKDNYRAPEYKRISY-----ILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPEIR-- 270 A I Y ++ + + + D ++ ++ + K R Sbjct: 172 EPGA--AERGGDIGYFSTFTMVHQFEDMAYETPVGEISDIVRTQFGYHILKVEDKRERSP 229 Query: 271 --TVEQLVFPNQKEA----------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---- 314 TV ++ ++ A +E LK+G F LA++ + + G Sbjct: 230 DITVSHIMISDKDNAARTFDPEERINEVNTLLKQGSSFEDLAKQYSEDKNSGKKGGKLNR 289 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 F K + + + + L GD + FG+ I + +F+E K+ + + Sbjct: 290 FGKGQLRSAAFEEVAYGLKNVGDVSEPFKTEFGWHIVRLDEKH--THQTFEEQKEMLEKK 347 Query: 375 M 375 + Sbjct: 348 V 348 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 61/419 (14%), Positives = 132/419 (31%), Gaps = 71/419 (16%) Query: 192 VDYIVLNNRHVPAIADPSNA---VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 VDY + + ++ +++ E+ NY + + +++ Sbjct: 67 VDYKLKVAEAYEQGLNNNDDYRKEFSKYEEQLSRNYLYEDKVTTDLAKLAYERGKYDLKV 126 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQG 304 ++ +++ Y+ V Q + EA + G+ F LA EE G Sbjct: 127 AHILVRSSYDD------------VPQDTLKAYNKIKEALDKARSGEDFGTLAGTYSEEPG 174 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK---PSFT 361 + +G FS + D + G+ + ++ FGY I V + + P T Sbjct: 175 AAERGGDIGYFSTFTMVHQ-FEDMAYE-TPVGEISDIVRTQFGYHILKVEDKRERSPDIT 232 Query: 362 VSFQEVKKDIANQMRITKASEKV--KEDYKRLEEFLALGTSMDEISRRE---KIVSIDLP 416 VS + A+ +E + L G+S ++++++ K Sbjct: 233 VSHIMISD-------KDNAARTFDPEERINEVNTLLKQGSSFEDLAKQYSEDKNSGKKGG 285 Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476 ++ GK AA L V +P + + V++ E Sbjct: 286 KLNRFGKGQLRS--AAFEEVAYGLKNVGDVSEPFKTEF-------GWHIVRLDEKH--TH 334 Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536 + EE +++ + EG + + + + Sbjct: 335 QTFEEQK---------------------EMLEKKVGEGPRSKIVVMAVNEKIKEKYGFKG 373 Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 DN FF +F+ + + F ++ + +F++ + + FI L Sbjct: 374 EDNFKPFFTEFVTDSIFNKTWDFDENFSQKDKM---LFEIGDDYTATYGDFASFIKQLQ 429 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 16/190 (8%) Query: 211 AVLTQWF----EKYKDNYRA--PEYKR----ISYILFDVHEKEKKIEISNDELQAEYEKN 260 L ++F E+ ++Y + EY+ + +V +K KK I + +A YE + Sbjct: 452 QELKKYFRTKLEETNEDYASVISEYRDGLLIFDVMRLNVWDKAKKDTIGS---KAYYEAH 508 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 K+ Y + + + + + A L GK ++ E ++ + S K Sbjct: 509 KQNYNWKKRISADVISSSQEDMIKVASTMLSNGKTIQEIKEALNQNDKISIIASSGKYEE 568 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 D SL ++ + +KG + +VI +V +I PS + EVK + + + Sbjct: 569 DDQSLPEN--FVIEKG-VSKPYEQHGNFVIVNVKDIIPSRVKLYDEVKGGVISDYQKQVE 625 Query: 381 SEKVKEDYKR 390 E ++ + Sbjct: 626 KEWMESLRDK 635 Score = 41.9 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 15/154 (9%) Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 ++ S ++ K L+ G ++ EI + + ++ +GK Sbjct: 515 KKRISADVISSSQEDMIKVASTMLSNGKTIQEIKEALN-QNDKISIIASSGK-------- 565 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 +Q L F + +SK + G+++ V +K+ IP+R + +EV V D++ Sbjct: 566 -YEEDDQSLPENFVIEKGVSKPYE---QHGNFVIVNVKDIIPSRVKLYDEVKGGVISDYQ 621 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 E + S ++ +E +K K + K Sbjct: 622 KQVEKEWMESLRDKHKVEVNK--KTLNKVKKQFD 653 >gi|332665904|ref|YP_004448692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter hydrossis DSM 1100] gi|332334718|gb|AEE51819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter hydrossis DSM 1100] Length = 656 Score = 84.3 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 46/327 (14%), Positives = 97/327 (29%), Gaps = 22/327 (6%) Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDV----VGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + +LA + K+ + TK L + + + D F V Sbjct: 95 YRRQLADSYLLNKQVTEKLTKELFERSQYDLDISHILFALPAEAKGADTVSTFRQAM-EV 153 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS--- 249 +L IA +A + + + Y L V + ++S Sbjct: 154 RARLLKGEDFATIAKQVSADKSAATNGGNIGFVTAMFPNGFYPLESVAYRSSFDQVSMPV 213 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE--------ADEAFQSLKKGKKFIQLAE 301 + K K + V ++ + D + +LKKG F +LA Sbjct: 214 RTSVGYHLVKVHSKRPARGEVEVAHILLRTEDADAMAVKMQIDTLYAALKKGLNFEELAA 273 Query: 302 EQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + G F + + D+ FS+AK GD++ S G+ I I Sbjct: 274 KNSQDTRTADKGGYVGFVTINRFEQAFEDAAFSVAKDGDYSKPFQTSVGWHIIK--RISK 331 Query: 359 SFTVSFQEVKKDIANQMRITKASEKV-KEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + +++ + +++ E K ++ + ++ ++ Sbjct: 332 KEIQPYDQMRGQLEARIKRDARFEMARKAMVDDIKRETGFKDYPNLLADFATTLNDTFFT 391 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + + V K+ F Sbjct: 392 FQWRAPQQRTGNVLFTMAKKAYTMGDF 418 >gi|29349779|ref|NP_813282.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron VPI-5482] gi|253569857|ref|ZP_04847266.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6] gi|29341690|gb|AAO79476.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron VPI-5482] gi|251840238|gb|EES68320.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6] Length = 712 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 87/726 (11%), Positives = 203/726 (27%), Gaps = 134/726 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G ++ ++ + ++ + V+ +++ + +GL + + Sbjct: 61 EYTEVIKLSRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119 Query: 120 -----ARSPLFHGK-DNKFSHD-----------------------------VF----VSR 140 + F F D + Sbjct: 120 GVHPLLQQTPFRNPQTGAFDKDMLNKFLVDYAKMNESQMPAQYAEQYNNMYKYWSFIQKT 179 Query: 141 LAREGINEKEYIDHYTKMLSRT----------------DVVGMFVGGMRPSNLLL----- 179 L + + EK Y K L ++ + ++ Sbjct: 180 LVQSRLAEK-YQALVAKALLSNPVEAQDAFDARVNQYDLLMAAVPYSSIVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E+R + YI + + + D + A L + Y + Sbjct: 239 LKDLYNKKKEQFKQYQESRDIKYIDVQVTASAEDRAAIQQEVDEATAQLATTTDDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + + Y K K + Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYYNGADNTINSFKVVAKTAAA 357 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G++ + +S + Sbjct: 358 DSIEFRQIQVFAEDALKTKALADSIYTAIKGGANFADLAKKYGQTGETNWMSSAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376 I +L S V++ G VI V+N K VK+++ Sbjct: 418 IDGDNL--KFISAINNTGVNEVVNLPLGQANVILQVTNKKAVKDKYKVAVVKREV----- 470 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + E Y +F+A + +++ + L +D + + Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPTAEKMIANAEEAGYKL--LDRRDLYSSEHTIGGVRGT 527 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 ++ L F + V + P R L+ V ++ + K Sbjct: 528 KEALRWAFSAKPGDVSGLYECGESDHMVAVALVGVTPEGYRPLKAVQDQLRAEIVKDK-- 585 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF----FGYDGISQV 552 KA +++ + D K + ++ + ++ + Sbjct: 586 -----KAEKIMADMKAANATSLDQYKAMSGAVSDSLKLVTFAAPAYVSALRSSEPLVGAY 640 Query: 553 FSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 S PI+ V ++ K+ + L M + ++ L Sbjct: 641 ASVAEMNKLSAPIKGNAGVFVLQMYGKDKLSDTFNAKDEEATLANMHAR-FASRLMNDLY 699 Query: 612 SQYSVT 617 + V Sbjct: 700 LKGKVK 705 >gi|332880502|ref|ZP_08448176.1| hypothetical protein HMPREF9074_03951 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681490|gb|EGJ54413.1| hypothetical protein HMPREF9074_03951 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 716 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 60/472 (12%), Positives = 144/472 (30%), Gaps = 85/472 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L+ IR ++ + I + + F+ +A+ S+ +S V + +++ F Sbjct: 4 LQKIR--AKGPLLVIVIGLALFAFI---AEEAMRSIQSASNESKQQVGEIYGERISVHEF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N + ++ G +++ + L ++ + V+ ++ E++GL + Sbjct: 59 QNLVDEYAEVVKFTSGNSALNDQ-QLTQLRDQVWNTYVNNKLIEHEAEELGLTVTDTEIQ 117 Query: 117 GEI--------ARSPLFHGKDNKFSHDVFVSRLAR-EGIN------EKEYIDHY------ 155 I ++P + + +F +V L EG+ EY+D+Y Sbjct: 118 SIISEGNSPILMQTPFRNEQTGRFDANVLKKFLTDYEGMKTKSEQMPAEYMDYYNSLYKF 177 Query: 156 --------TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIA 206 + + M + ++ A + + + Sbjct: 178 WMFIEKTLRQESLAQKYQVLLSKAMLGNKIIDKAAFEARTNESDIIMAAVPYSTINDKDI 237 Query: 207 DPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + L + + K+ ++ E + I +I V + ++ Sbjct: 238 KVEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDM------------ 285 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 E +L G ++ E G +++ L SK P+ + Sbjct: 286 ------------------AETATALAAGGDIAKIVRESGSTINYSPL-PVSKNIFPN-DI 325 Query: 326 ADSIFSLAKKGDFTPV--IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 A + S+A G G I V N + + Sbjct: 326 ASQLDSMA-VGQMKAPYYYAGDNTMNIIKVINKISAPD------SIQLRQIQVAGADMNA 378 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAI 433 +++ + L G + D I+++ + ++ G + G + I Sbjct: 379 IQKTADSIMTALRGGVAFDSIAKKYNQTGEKTWITSRNYEGAPLDGDNLKFI 430 >gi|304405785|ref|ZP_07387443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304345028|gb|EFM10864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 320 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 84/238 (35%), Gaps = 15/238 (6%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 TK L R M M + L+ A + +V L+ + + Sbjct: 67 EQDLTKELHRQYGASMLRTMMLHEAVKLEAAA----QGLTVTAEQLSAELARTMEGYGSE 122 Query: 212 VLTQWFEKYKDNY---RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 +++E+ ++ R Y L + I +++D++ ++ ++ Sbjct: 123 --AEYYEEMQEQLGLSREDVQADAEYRLLLEQIATRAITVTDDQIDEYLAEHASEFTGVT 180 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEY-IPDV 323 + ++ + +A++ + L G+ F +A+ LG + + Sbjct: 181 ELKLRWILTGTRSDANDVIEKLSDGEDFALMAKTYSIDAFTSEQGGDLGYIEDNDPLVEA 240 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 +L D+ SL G T + GY I + + ++ + +++ Q+ + +A Sbjct: 241 ALLDATHSL-DVGQVTGPVKTEGGYAIIRLDERREREGMALGQRREEARRQVSLEQAR 297 >gi|293376704|ref|ZP_06622927.1| putative foldase protein PrsA [Turicibacter sanguinis PC909] gi|292644661|gb|EFF62748.1| putative foldase protein PrsA [Turicibacter sanguinis PC909] Length = 544 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 71/191 (37%), Gaps = 17/191 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK----FIQLAEE 302 I++++LQA Y + ++ +++ A + L + F +LA+E Sbjct: 334 PITDEQLQAAYNEYTPNIS------ARHILVEDEETAKDLIAQLDAAEDKEAKFEELAKE 387 Query: 303 QGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 K S LGSF K + ++ F+L + +GY + + Sbjct: 388 YSKDGSASNGGDLGSFGKGQMV-SEFENAAFALNVGEYTEEPVKTQYGYHVIY--KYAED 444 Query: 360 FTVSFQEVKKDIANQMRITKASE-KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 SF ++K ++ +R + ++ K++ + + + + + +R + ++ Sbjct: 445 EKPSFDDLKDELETTIRSEEYTQLKLEAILIKYRTEANVKFTDESVQKRYDAIVANIQDS 504 Query: 419 DFAGKDVKGKE 429 A + Sbjct: 505 LSAEEGTDNTT 515 >gi|17545235|ref|NP_518637.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum GMI1000] gi|17427526|emb|CAD14044.1| probable peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia solanacearum GMI1000] Length = 498 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 53/409 (12%), Positives = 115/409 (28%), Gaps = 67/409 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + V RA +G ++L+ L+ Sbjct: 90 DEVVAVVNTDIITRRELLDRADLVERTLQSQNRQV--PVRADLLG---EVLEQLILERVQ 144 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+LA+ G+ +Y + + + Sbjct: 145 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDKYREDLRQEI 200 Query: 160 SRTDVVGMFVGGMRP------SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSN 210 + V N L Q A + +V I++ + + Sbjct: 201 LLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAEDASAEQKAA 260 Query: 211 AVLTQ------------WFEKYKDNYRAPE-----------------YKRISYILFDVHE 241 A + + +D+ APE + + + Sbjct: 261 ARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKPGQ 320 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQK--EADEAFQSLKK-- 292 ++ S +K + V ++ AD+A + L Sbjct: 321 VVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARRQLAGLR 380 Query: 293 -----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 G F A + S LG S + ++ L K G+ + + Sbjct: 381 DRIVHGYDFGDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-GLLKPGEVSQPVQS 438 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 439 QFGLHLIQVEGRREAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 486 >gi|288924570|ref|ZP_06418507.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17] gi|288338357|gb|EFC76706.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17] Length = 474 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 65/413 (15%), Positives = 141/413 (34%), Gaps = 67/413 (16%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIR--------TVEQLVF-------PNQKEA- 283 ++ + +++ +++A K ++ Y + R ++ Q++A Sbjct: 93 DQQVRPTLVTDADVEA---KARDIYRETQQRVDGGGGLLKTSHILLLLDQNATKTQQDAA 149 Query: 284 ----DEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 D + +LKKG F LA ++ +++ L + + + D ++L KK Sbjct: 150 KARIDSVYNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVK-AYEDVAYAL-KK 207 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + +GY I + + +P F + VK I + + + RL+E Sbjct: 208 GEISKPFLSEYGYHIVKLDDKQPFF--PYDSVKTSIYQFIESRGLRDAI--VTDRLQEEA 263 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 +G + E K + + Y + LL K Sbjct: 264 KVGNTTPEQLLDAKTEELTAKD--------DALKYLIKEYHDGLLLYEISNRTVWDKAAK 315 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 +Y K+ R A V + ++ ++ S +GK Sbjct: 316 DEAGLSAYFAKNKKKYRWEEPR--------------FKGIAYHVKTASDVDAVKRSIKGK 361 Query: 516 NFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGI--SQVFSGPVEM--VKCFPIENGLS 570 F + L + + + R++ G + + +VF PV + V+ +PI+ Sbjct: 362 PFAEWADILRTTFNNDSVLRIRVEKGIFKKGDNAVVDKEVFKVPVTVKPVEGYPIDATFG 421 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 V+ K P +D + L + L+ +Y+V ++ ++ Sbjct: 422 KVL------KNKPEDYQDVRALVVAD-YQDALEKQWVESLRKKYTVVINKEVL 467 >gi|317153442|ref|YP_004121490.1| SurA domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943693|gb|ADU62744.1| SurA domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 312 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 48/380 (12%), Positives = 110/380 (28%), Gaps = 83/380 (21%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 + + + L++ + +V V + + L I G +N Sbjct: 5 IFLFISLFLLVFSTNSLAVESVYDKILVKVNEDIITQYELDEEMRPILASIK---GRELN 61 Query: 77 SERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L ++ LD +V+ + Q I+ + + EI R ++ + + Sbjct: 62 EAEREQLADLRRQTLDRMVNDLLMTQEIKKFQITVTDTVIDDEIRRM----KEERGLTDE 117 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 F + R+G+ +E+ ++ + +++G V Sbjct: 118 AFEEMVKRDGLTIQEFRSKLKGLIEKQELLGYMVHS------------------------ 153 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 +++ + +E +DNY + + Sbjct: 154 ---------KVVVTDSEIEAEYEARRDNYLLEKMVGL----------------------- 181 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS 314 LV P A E + + G+ F Q + + S GS Sbjct: 182 -----------------AILVLPADVSALEVRKRIMDGELTFDQAVLKYSVGPATDSGGS 224 Query: 315 FSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + D++ K+G + + I V +EV+ I Sbjct: 225 IGEVNWADLADDWRDSIEGVKQGGVGTPVEVRGQMALLSPVTIASDRLVPLEEVRDAIFE 284 Query: 374 QMRITKASEKVKEDYKRLEE 393 ++ K E +++L++ Sbjct: 285 RLMEGKRETIFDEYFEKLKQ 304 >gi|281419839|ref|ZP_06250838.1| peptidyl-prolyl cis-trans isomerase [Prevotella copri DSM 18205] gi|281406139|gb|EFB36819.1| peptidyl-prolyl cis-trans isomerase [Prevotella copri DSM 18205] Length = 716 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 56/496 (11%), Positives = 145/496 (29%), Gaps = 86/496 (17%) Query: 17 FLVVLFVPFLIWGL--SDALFSVSGSST-----VVSVGRQKVPFSSFINSWKQELGMISQ 69 ++V + F ++ +A S + + V +K+ F + +I Sbjct: 12 VILVCIISFGLFAFIAEEAFRSCDSAKNNERQQIGEVLGEKISVQDFQKLVDEYSEVIKM 71 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--------EIAR 121 + G E + + + + + + + +GL + + + Sbjct: 72 QQGQENLPEE-QMNQVKDMVWNTYIQNQIIAKEASKLGLTVTDAELQDILKTGTNPMLQQ 130 Query: 122 SPLFHGKDNKFSHDVFVSRL-----------AREGINEK--------EYIDH-YTKMLSR 161 +P + + +F L A + ++ +I+ + Sbjct: 131 TPFVNQQTGRFDASSLQKFLADYKAQKANPSANAQMMDQYTKIYNYWSFIEKTLRQQTLA 190 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKY 220 + G + + A + E + + S + L +++ Sbjct: 191 QKYQALLAGCFLSNPVEAKMAFKEENEESQIQLAAFPYSDIQDDKVKISESDLKAKYDEI 250 Query: 221 KDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K ++ P E + I ++ +++ SN + A ++ + Sbjct: 251 KARFKQPVESRDIKFVDI-------EVQASNADRAALNKEFAGYHS-------------- 289 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 L ++ + +++ + + SK+ P +A + S+A G + Sbjct: 290 ---------QLAAAADPTEVVRKSASTVAYLGI-PVSKDAFP-RDIAAQLDSMA-VGSTS 337 Query: 340 PVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 V G I + + V+ + + A K ++ +A Sbjct: 338 AVKANAGDNTLNIVKLVAKQELP----DSVQYRVIQVAANSVAEAK--TKADSIQGAIAG 391 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 G + I+++ A K E A K+ F ++ + Sbjct: 392 GADFEAIAKKYGQTGDK------AWMTTKQYEYAQSMDKDNKTFINTLNTAAVNSLSQLQ 445 Query: 458 LPDGSYMWVQIKESIP 473 L G Y+ +Q+ + Sbjct: 446 LGQG-YVVLQVLDRKA 460 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 54/349 (15%), Positives = 106/349 (30%), Gaps = 27/349 (7%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF- 330 V + +AD ++ G F +A++ G++ + + EY + + F Sbjct: 371 AANSVAEAKTKADSIQGAIAGGADFEAIAKKYGQTGDKAWMTTKQYEYAQSMDKDNKTFI 430 Query: 331 ---SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 + A + + G GYV+ V + K + V I + + + Sbjct: 431 NTLNTAAVNSLSQLQLGQ-GYVVLQVLDRKAMVSKYTAAV---IKKPI--DFSQGTYRTA 484 Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 Y + F++ +++ + + + V VA I + L +F Sbjct: 485 YNKFSSFVSANPKSEDLLKNAAKEGYKVQDLKDITTSVHY--VANIHSTREALKWIFDSK 542 Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQ 505 + + + V + + R L + V VK + K AE + +K N Sbjct: 543 EGEISPLYECGDNNHLLVVVLDKIHHIGYRDLNDAVVKETVKAEVLKDKKAEMIEAKLN- 601 Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYDGISQVFSGPVEMVK 561 G K G + + NQI V Sbjct: 602 --------GVKNIAAAKAKGGKVSSVNQITFAAPVFIAATGASEPALSGAVAGTKKGAFS 653 Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 ++ +F+VTN PV+ DK + + + L Sbjct: 654 AHAVKGNAGVYLFQVTNKANRPVKFDDKTYQQKCRQKAMQYAGNFMNEL 702 >gi|333031477|ref|ZP_08459538.1| peptidyl-prolyl cis-trans isomerase [Bacteroides coprosuis DSM 18011] gi|332742074|gb|EGJ72556.1| peptidyl-prolyl cis-trans isomerase [Bacteroides coprosuis DSM 18011] Length = 712 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 95/718 (13%), Positives = 206/718 (28%), Gaps = 132/718 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + + + F I G + +F V V + + S + Sbjct: 4 LQNIR--SKGPLLVGAIALALFAF-IAGDALKVFQPRQPHDVGEVDGKALSISEYQLLVD 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 E I + + + + + + VS + + +GL + + + Sbjct: 61 -EYTNIQKGFSGRNSLSEMETNQIKDMVWNTYVSNQVIANEADKLGLVVTKAELNNILDQ 119 Query: 122 --------SPLFHGK-DNKFSHDVFVSRLAR-------EGINEK---------------- 149 P+F + +F D LA GI+ Sbjct: 120 GVNPTFRIVPMFFNEQTGRFDKDKLFMFLAEYAKLSKTAGIDPNYMGSMQQLHALWAFVE 179 Query: 150 -------------------------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD---- 180 E L++ ++ + + + Sbjct: 180 KSLIQEKLAEKYMALVGSAFGTNKVEVESGIEGRLNQANLTAALIPFTSVDDSKVQVTDA 239 Query: 181 ----------QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE---KYKDNYRA- 226 + + E+R V YI + A + ++++ E KDNY + Sbjct: 240 DLQKEYDAKKEMFKQDTESRQVKYIDVKINPSVADVEALEQEVSEYAELLRNEKDNYASI 299 Query: 227 ------------PEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFS 266 Y + DV K+ + + + K +K Sbjct: 300 INNTSGSNIPYNDVYLSLELYPEDVIAHVKETSVGDTFGPYTNAQDATINAVKVVDKKNL 359 Query: 267 PEIRTVEQLVFPN-QKEA-----DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 P+ L + +A D +L G F +AEE+ + + + Sbjct: 360 PDSVQFRMLQIQGLEADALVKKSDSIVNALNNGASFKSIAEEEQQPSEAFWISENTIANQ 419 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKDIANQMRITK 379 L +++ ++ + + G +I + + K VK+ + Sbjct: 420 EQFVLYNTLSTMQPNEIKSLPVQS--GNIILQLVDRKVFKDKYKLAVVKR------TMEI 471 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 +SE + Y +F+A +++ + + + + V I ++ Sbjct: 472 SSETANKAYNDFSQFVAENSTVQSMIDNAEEAGYSVSTQELTTSM---HTVGNISSTKEA 528 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + +F + + V + + IPA R L V +K K AE + Sbjct: 529 VRWIFDSKTGQVSNIYECGEGDHLLVVGLTDIIPAGYRPLSYVKDGLKNLVLNNKKAEYL 588 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE---NKFFGYDGISQVFSGP 556 ++ + K+ D+ A + T + +S + Sbjct: 589 ENQIASVNA------KSISDVASIENAVVDTIKHVTFNSPAFISKTNSSEPVVSGYAAVA 642 Query: 557 VEMVKCFPIENGLSYVVFKV-----TNSKVGPVQEKDKFISYLTQ-MMNKDLLDSVIA 608 E V PI+ S +V + + +V E+ + S + + +L +I Sbjct: 643 KEGVLSGPIKGNASVMVLNLLNRDKSEEEVDATVERTRIESEMMYFANGRTILQDLIE 700 >gi|329925505|ref|ZP_08280379.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5] gi|328939788|gb|EGG36128.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5] Length = 311 Score = 83.9 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 32/277 (11%) Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN--------LLLDQAKRFYFENR 190 + + I E E++D K R ++ M + +R Sbjct: 48 ASIQDRAITEDEWVDELKKRYGREMLMTMLNRHAVALEAKAKGIDVTAAEVETEIEVMSR 107 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 S + + + L +Y L + I Sbjct: 108 SYGSKERFLSEMEDQLGITESELKT---------------ETTYRLLLEKIATSDVHIEE 152 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---- 306 ++ + E+ +++ + + + ++ EA+ L+ G+ F LA + Sbjct: 153 QQIDSYLEQYPDQFRPKKQLNLSMIEVASEDEAERVMDRLENGEDFADLAAQVSLDEYTR 212 Query: 307 LSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 +G ++ L ++ SL + GD + + Y I +V +I S + Sbjct: 213 EDGGQIGLVEEDDPFLPPELLEAALSL-EPGDIAGPVSLTDTYAIVYVKDIIEPQAPSEE 271 Query: 366 EVKKDIANQMRITKA---SEKVKEDYKRLEEFLALGT 399 ++K + Q+ + ++ SE ++ ++ E ++ GT Sbjct: 272 SIRKAVRKQLALEQSVSLSELERQLREKYEARISAGT 308 Score = 38.0 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 7/128 (5%) Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGA---SLLTTNQINRMDNENKFFGYDGISQVF 553 E S + V++ + G++F D+ + + QI ++ ++ F + + Sbjct: 178 EVASEDEAERVMDRLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAAL 237 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL---LDSVIAYL 610 S + P+ +Y + V + ++ + + + + L + L Sbjct: 238 SLEPGDIAG-PVSLTDTYAIVYVKDIIEPQAPSEESIRKAVRKQLALEQSVSLSELERQL 296 Query: 611 KSQYSVTV 618 + +Y + Sbjct: 297 REKYEARI 304 >gi|121956451|sp|Q8Y220|SURA_RALSO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 496 Score = 83.9 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 53/409 (12%), Positives = 115/409 (28%), Gaps = 67/409 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + V RA +G ++L+ L+ Sbjct: 88 DEVVAVVNTDIITRRELLDRADLVERTLQSQNRQV--PVRADLLG---EVLEQLILERVQ 142 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+LA+ G+ +Y + + + Sbjct: 143 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDKYREDLRQEI 198 Query: 160 SRTDVVGMFVGGMRP------SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSN 210 + V N L Q A + +V I++ + + Sbjct: 199 LLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAEDASAEQKAA 258 Query: 211 AVLTQ------------WFEKYKDNYRAPE-----------------YKRISYILFDVHE 241 A + + +D+ APE + + + Sbjct: 259 ARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKPGQ 318 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQK--EADEAFQSLKK-- 292 ++ S +K + V ++ AD+A + L Sbjct: 319 VVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARRQLAGLR 378 Query: 293 -----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 G F A + S LG S + ++ L K G+ + + Sbjct: 379 DRIVHGYDFGDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-GLLKPGEVSQPVQS 436 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 437 QFGLHLIQVEGRREAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 484 >gi|261403937|ref|YP_003240178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] gi|261280400|gb|ACX62371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] Length = 311 Score = 83.9 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 92/277 (33%), Gaps = 32/277 (11%) Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN--------LLLDQAKRFYFENR 190 + + I E E++D K R ++ M + +R Sbjct: 48 ASIQDRAITEDEWVDELKKRYGREMLMTMLNRHAVALEAKAKGIDVTTAEVETEIEVMSR 107 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 S + + + L +Y L + I Sbjct: 108 SYGSKERFLSEMEDQLGITESELKT---------------ETTYRLLLEKIATSDVHIEE 152 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---- 306 ++ + E+ +++ + + + ++ EA+ L+ G+ F LA + Sbjct: 153 QQIDSYLEQYPDQFRPKKQLNLSMIEVASEDEAERVMDRLENGEDFADLAAQVSLDEYTR 212 Query: 307 LSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 +G ++ L ++ SL + GD I + Y I +V +I S + Sbjct: 213 EDGGQIGLVEEDDPFLPPELLEAALSL-EPGDIAGPISLTDTYAIVYVRDIIEPQAPSEE 271 Query: 366 EVKKDIANQMRITKA---SEKVKEDYKRLEEFLALGT 399 ++K + Q+ + ++ +E ++ ++ E ++ GT Sbjct: 272 SIRKAVRKQLALEQSVSLTELERQLREKYEARISAGT 308 Score = 38.0 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 7/128 (5%) Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGA---SLLTTNQINRMDNENKFFGYDGISQVF 553 E S + V++ + G++F D+ + + QI ++ ++ F + + Sbjct: 178 EVASEDEAERVMDRLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAAL 237 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL---LDSVIAYL 610 S + PI +Y + V + ++ + + + + L + L Sbjct: 238 SLEPGDIAG-PISLTDTYAIVYVRDIIEPQAPSEESIRKAVRKQLALEQSVSLTELERQL 296 Query: 611 KSQYSVTV 618 + +Y + Sbjct: 297 REKYEARI 304 >gi|146310266|ref|YP_001175340.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter sp. 638] gi|145317142|gb|ABP59289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp. 638] Length = 428 Score = 83.9 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 55/369 (14%), Positives = 109/369 (29%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKVTDEQLDQAIANI----SKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLS-------------------RTDVVGMFVGGMR 173 + D SRLA +GI+ Y + K + + Sbjct: 110 TLDQMRSRLAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDQLAKQVGNQND 169 Query: 174 PSNLL--------------LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 S L DQA + RS+ N +A +A Sbjct: 170 ASTELNLSHILVPLPENPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGG 229 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274 R E I +K + + K ++ + Sbjct: 230 QMGWGRIQELPSIFGQALSTAKKGDIVGPIRSGVGFHILKVNDRRGQSQNISVTEVHARH 289 Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ +A ++ +K GK F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDDQARVKMEQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIY 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG + +H +FG+ + + + + + + K + K S Sbjct: 350 DPAFRDALMKL-NKGQMSAPVHSTFGWHLIELLDTR-NVDKTDAAQKDRAYRMLFNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 17/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + +E +++ I E+ ++ + + + ++ P Sbjct: 126 ATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDQLAKQVGNQNDASTELNLSHILVPLPE 185 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 + +A + + G F +LA + G I + S+ Sbjct: 186 NPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSIFGQ 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386 S AKKGD I G+ I V++ + S +S EV I + ++ + Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDRRGQSQNISVTEVHARHILLKPSPIMTDDQARV 305 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +++ + G + + K S D + G P L ++ Sbjct: 306 KMEQIAADIKSGKT--SFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKL 360 >gi|157147527|ref|YP_001454846.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter koseri ATCC BAA-895] gi|157084732|gb|ABV14410.1| hypothetical protein CKO_03327 [Citrobacter koseri ATCC BAA-895] Length = 428 Score = 83.9 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 108/369 (29%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA +G++ Y K + ++V + +D + Sbjct: 110 TLDQMRSRLAYDGLSYSTYRSQIRKEMIISEVRNNEVRRRVTILPQEVDALAQQVGNQND 169 Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224 I++ P S A + + Sbjct: 170 ASTELNLSHILIPLPENPTSDQVSEAEARARSIVDEARNGSDFGKLAITYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274 R E I +K + + K + + Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARH 289 Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++A +E +K GK F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDQQARLKLEEIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG + +H SFG+ + + + + + + K + K S Sbjct: 350 DPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 >gi|319941329|ref|ZP_08015660.1| hypothetical protein HMPREF9464_00879 [Sutterella wadsworthensis 3_1_45B] gi|319805250|gb|EFW02073.1| hypothetical protein HMPREF9464_00879 [Sutterella wadsworthensis 3_1_45B] Length = 268 Score = 83.9 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 5/166 (3%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 + + V+E KK ++ EL+ EY+K +++ E R V ++ Q EA + + Sbjct: 99 DMVLMKHAVNEYVKKNPVTEKELKDEYQKESDRWGKTEYR-VRHILVKTQDEAKQIIDQI 157 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 KG F ++A E+ G ++ + L+ +I L K + G Sbjct: 158 NKGASFAKIAAEKSLDEESKDRGGILDWTSASVFTGQLSSAIMGLKKGEMDKVPVQSPAG 217 Query: 348 YVIAHVSNIKPSFT-VSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + V +++P+ ++ K+++ + + K + E R E Sbjct: 218 FHVVKVEDVRPAELYPKYEARKEELRHILLQRKVQAFIHEQVLRAE 263 >gi|260773615|ref|ZP_05882531.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP 69.14] gi|260612754|gb|EEX37957.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP 69.14] Length = 431 Score = 83.9 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 69/480 (14%), Positives = 140/480 (29%), Gaps = 101/480 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S ++ + E L ++I++ L+ Sbjct: 28 DRVAVIVNSGVILQSDIDSALLTVRANAKTN-QQTLPPENI----LREQIIEKLIVDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D + I +N+ + + +A +G+ E+ + K + Sbjct: 83 QQEADRIGVRIDDNTLNDAITEI----AHNNQQTPEQLRLSIAEQGLTYPEFREQIRKEI 138 Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + ++ V + +D + S Sbjct: 139 AASEARNALVRRRINIIPAEVDTLAELLAQETSATV------------------------ 174 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +IS+I ++ + K E+ Sbjct: 175 ----------QYKISHIQLRFNDGQDKSEV------------------------------ 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + +A++ L +G F +A K +L G KE +P AD I + K Sbjct: 195 -EAQANKLVAELNQGADFSTMAITYSKGPRALQGGDWGWMRKEEMP-TIFADQI-KMQNK 251 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDY 388 G G+ I + +IK TV+ EV K I + A ++ + Sbjct: 252 GSIIGPFRSGVGFHILKIDDIKGLETVAVTEVNARHILIKPTII--LSDEGAKNQLNDLV 309 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448 +R+ A S E++++ S D G+ +P + + + Sbjct: 310 RRIN---AGEASFAELAQQY---SQDPGSAAQNGELGYQTPELYVPEFKHQIETL----- 358 Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508 P+ + V++ + DR + + K EE S+ +L Sbjct: 359 PVGTISEPFKTVHGWHIVEVLDRR-EVDRTDAAMKNRAYRILFNRKFNEEASTWLQELRA 417 >gi|53725016|ref|YP_102044.1| survival protein SurA [Burkholderia mallei ATCC 23344] gi|67641452|ref|ZP_00440230.1| chaperone SurA [Burkholderia mallei GB8 horse 4] gi|121598370|ref|YP_994032.1| putative survival protein SurA [Burkholderia mallei SAVP1] gi|124385555|ref|YP_001028304.1| putative survival protein SurA [Burkholderia mallei NCTC 10229] gi|126449043|ref|YP_001081948.1| putative survival protein SurA [Burkholderia mallei NCTC 10247] gi|254176840|ref|ZP_04883497.1| putative survival protein SurA [Burkholderia mallei ATCC 10399] gi|254203730|ref|ZP_04910090.1| putative survival protein SurA [Burkholderia mallei FMH] gi|254208705|ref|ZP_04915053.1| putative survival protein SurA [Burkholderia mallei JHU] gi|81685183|sp|Q62MM4|SURA_BURMA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|52428439|gb|AAU49032.1| survival protein SurA, putative [Burkholderia mallei ATCC 23344] gi|121227180|gb|ABM49698.1| putative survival protein SurA [Burkholderia mallei SAVP1] gi|124293575|gb|ABN02844.1| putative survival protein SurA [Burkholderia mallei NCTC 10229] gi|126241913|gb|ABO05006.1| putative survival protein SurA [Burkholderia mallei NCTC 10247] gi|147745242|gb|EDK52322.1| putative survival protein SurA [Burkholderia mallei FMH] gi|147750581|gb|EDK57650.1| putative survival protein SurA [Burkholderia mallei JHU] gi|160697881|gb|EDP87851.1| putative survival protein SurA [Burkholderia mallei ATCC 10399] gi|238522391|gb|EEP85835.1| chaperone SurA [Burkholderia mallei GB8 horse 4] Length = 448 Score = 83.5 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S P ++ +L + G + + Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGE-PVPEFERAMNTL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|90416848|ref|ZP_01224777.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma proteobacterium HTCC2207] gi|90331195|gb|EAS46439.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma proteobacterium HTCC2207] Length = 434 Score = 83.5 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 59/431 (13%), Positives = 126/431 (29%), Gaps = 68/431 (15%) Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78 +L V + ++ + V V V S I Q+ G + Sbjct: 10 ALLAVLLGAFSVTASAQIEILDKVVAIVDEDVVLESEVQRRLATIYAQI-QQSGTQPPPQ 68 Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138 + +++L+ L+S G+ + +AR K N+ + + + Sbjct: 69 EI----IVQQVLERLISERLQLNMGYSAGIRITDAELNDAMARI----AKSNQLTMEQYA 120 Query: 139 SRLAREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR------- 190 ++ G + +M+ G + +R SN LD E R Sbjct: 121 EQIHATGSTLSNVREEIRNEMILMRVQQGQVMRRIRISNQELDNFLN-SEEGRFMTSPDV 179 Query: 191 SVDYIVLNNRHVPAIADP---------------SNAVLTQWFEKYKDNYRAPEYKRISYI 235 +V +I+L + S Q + A + + + Sbjct: 180 NVGHILLPVPSGKNTDEVNAILQRAQGILDQANSGTDFRQLAIANSADQTALQGGDLGWR 239 Query: 236 LFDVHEKEKKIEISNDELQ---------------AEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + E+ YE+ E ++ Sbjct: 240 KMAQLPGVFIEAVEKLEIDQVSEPIRSDAGYHLIKLYERKGGGEQLIEQHFARHILIKPN 299 Query: 281 KEADEA---------FQSLKKGKKFI----QLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327 + DEA + +K G+ F + +E+ G +L+ LG + Sbjct: 300 QIRDEATVVSQLTELRERIKAGEDFALLTKEFSEDPGSALNGGELGWSTPGMFV-PEFEQ 358 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDIANQMRITKASEKVK 385 ++ S+ + + + FG+ I V+ + F E + N +R K E+++ Sbjct: 359 TMGSI-ELNEVSAPFLSQFGWHILQVTERR---NQDFSENITRNRAQNLLRQRKYEEELQ 414 Query: 386 EDYKRLEEFLA 396 + + + Sbjct: 415 VWLQEIRDEAF 425 Score = 64.6 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 53/394 (13%), Positives = 114/394 (28%), Gaps = 47/394 (11%) Query: 139 SRLAREGINEKEYIDHYTKMLSRT-----DVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 +++ + G ++L R + + G+R ++ L+ A R Sbjct: 56 AQIQQSGTQPPPQEIIVQQVLERLISERLQLNMGYSAGIRITDAELNDAMA-----RIAK 110 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 L + + L+ E+ ++ + + + ++I ISN EL Sbjct: 111 SNQLTMEQYAEQIHATGSTLSNVREEIRNE--------MILMRVQQGQVMRRIRISNQEL 162 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQSLKKGKKFIQLAE 301 + ++ + V ++ P + A G F QLA Sbjct: 163 DNFLNSEEGRFMTSPDVNVGHILLPVPSGKNTDEVNAILQRAQGILDQANSGTDFRQLAI 222 Query: 302 EQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 L LG +P V + + + I GY + + K Sbjct: 223 ANSADQTALQGGDLGWRKMAQLPGVFIE--AVEKLEIDQVSEPIRSDAGYHLIKLYERKG 280 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 ++ + + +L E + ++ + K S D Sbjct: 281 GGEQLIEQHFA--RHILIKPNQIRDEATVVSQLTELRERIKAGEDFALLTKEFSEDPGSA 338 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 G+ +P EQ + + L++ L + +Q+ E R++ Sbjct: 339 LNGGELGWSTPGMFVPEFEQTMGSI-----ELNEVSAPFLSQFGWHILQVTER---RNQD 390 Query: 479 LEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 E + + K EE+ ++ E Sbjct: 391 FSENITRNRAQNLLRQRKYEEELQVWLQEIRDEA 424 >gi|251767814|ref|ZP_02268497.2| putative survival protein SurA [Burkholderia mallei PRL-20] gi|254360242|ref|ZP_04976512.1| putative survival protein SurA [Burkholderia mallei 2002721280] gi|148029482|gb|EDK87387.1| putative survival protein SurA [Burkholderia mallei 2002721280] gi|243061646|gb|EES43832.1| putative survival protein SurA [Burkholderia mallei PRL-20] Length = 450 Score = 83.5 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 41 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 96 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 151 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 152 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 211 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 212 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 271 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 272 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 331 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S P ++ +L + G + + Sbjct: 332 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGE-PVPEFERAMNTL-QDGQVSNPVR 389 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 390 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 438 >gi|312860326|gb|ADR10202.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium enrichment culture clone F5-11] Length = 290 Score = 83.5 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + E KKIEI + + Y + + + + Q+V ++ A Sbjct: 123 QRDTLIAQRFLAEASKKIEIDDAAIAEYYAQLPKHF----EYDLRQIVTADEASARAVIA 178 Query: 289 SLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F QLA E ++ + SLG E +P ++AD++ ++ + Sbjct: 179 KLKDGADFAQLASEMSQAPEAANGGSLGWLMAEQLP-TTIADAVRAMQAGTFTDQPLQTP 237 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 G+ + V ++ V + + I ++R K + + + Sbjct: 238 QGWHVVRVEGVRQLEQVPLETARAWIEGELRNQKIQQMIDQM 279 Score = 45.8 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 74/229 (32%), Gaps = 11/229 (4%) Query: 398 GTSMDEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 G + E + + + + + + + ++ + FG DD + Sbjct: 62 GVTRQEKASEAEATGQTAQPELTEADHQAILDRLITLEAVVQEAAKQGFGTDDAFLHELA 121 Query: 456 VALPD--GSYMWVQIKESIPARDRKLEEVLTDV----KKDWKTVKTAEEVSSKANQLVLE 509 + + + I D + E + + D + + TA+E S++A V+ Sbjct: 122 LQRDTLIAQRFLAEASKKIEIDDAAIAEYYAQLPKHFEYDLRQIVTADEASARA---VIA 178 Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569 K+G +F + + + N + + V + P++ Sbjct: 179 KLKDGADFAQLASEMSQAPEAANGGSLGWLMAEQLPTTIADAVRAMQAGTFTDQPLQTPQ 238 Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + V +V + + +++ + + +I +++ V + Sbjct: 239 GWHVVRVEGVRQLEQVPLETARAWIEGELRNQKIQQMIDQMRASAKVEI 287 Score = 41.5 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 38 SGSSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 SG+ V +V + +P F +QE ++ G E + + ILD L+ Sbjct: 39 SGNEPVATVNGRPIPRGVFEVMLGVTRQEKASEAEATGQTAQPELTEAD--HQAILDRLI 96 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIAR 121 + + Q G D + + Sbjct: 97 TLEAVVQEAAKQGFGTDDAFLHELALQ 123 >gi|331000016|ref|ZP_08323712.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] gi|329573164|gb|EGG54781.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis YIT 11859] Length = 268 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 5/176 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + Y V + +++ +L+ YE+ K++Y P V ++ ++EA + Sbjct: 88 ERQTEIYSAELVRKNAAAHPLTDADLKKTYEEVKKQY-DPNEIKVRHILVKTEQEAKDII 146 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +SL G F +A+E+ + G + I A++ +L K H Sbjct: 147 KSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNIRRIAIPGFAETAMALNKGALLPVPFH 206 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + GY + + + + SF +K I N +A + + + K + A Sbjct: 207 SALGYHVIQLQDKREVPLPSFDALKPQIQNLAAQRQAQQYMADLMKNAKIAEAAPA 262 >gi|31789450|gb|AAP58564.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 434 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E RI + + +K++ ++ E+ A ++ + N+ +A+E Sbjct: 197 EQARILAQTYAQEQLAEKMKATDAEIDAYIAQHPDLDAK-----------QNRGKAEEVL 245 Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + +K G+ F +LA+E LG F++ + + F+L K G+ + ++ Sbjct: 246 KRVKAGEDFAKLAKEFSTDPGSKEKGGDLGWFAQGAMV-PEFEQAAFAL-KPGEVSDLVE 303 Query: 344 GSFGYVIAHVSNIKPSFT--VSFQEVKKDIANQMRITKASE--------KVKEDYKRLEE 393 SFGY I V K ++V + + A K ++ + E Sbjct: 304 SSFGYHIIKVEERKTETKDGKPQEQVHA--RHILIGDSAKSDNPFAPPMKGRDKARAAVE 361 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +DEI +R + + V + P + Sbjct: 362 EEKQKKVLDEIVKRSHVTVAENFQVKMPEQQQMPGLPPGFPQAD 405 >gi|90580797|ref|ZP_01236600.1| putative survival protein SurA [Vibrio angustum S14] gi|90438065|gb|EAS63253.1| putative survival protein SurA [Vibrio angustum S14] Length = 433 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 152/495 (30%), Gaps = 90/495 (18%) Query: 22 FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + ++ G+S + V++V + S ++ + + + + + + Sbjct: 8 VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDV-SAMLKTVRLNAAEEHQQLPPNN 66 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L ++++D L+ Q + +G+ D ++ IA K S D Sbjct: 67 I----LRQQVMDQLILENLQIQQAQQLGIRIDDSQLDQAIADV----AKQRNMSVDQLRQ 118 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 LA+ G++ + + + E R++ Sbjct: 119 SLAKAGVSYSMFREQMRNDM-------------------------LASEARTII------ 147 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 V + + ++ + + IS I V E K E Sbjct: 148 --VRKRVNVLPQEVESLAKQMAEQTQQNVQYNISQIQIRVDEDADKAERDKA-------- 197 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316 ++EA++ LKKG F QLA K+L G S Sbjct: 198 --------------------KQEAEDIVAQLKKGANFSQLAYRYSKGPKALKGGEWGWMS 237 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373 K +P AD I + K GY I ++++K +VS EVK I Sbjct: 238 KAEMP-TVFADQIQNNGKD-AIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKP 295 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 M ++ A+ K + +++ + + G + K S D G+ Sbjct: 296 SMILSDAAAKAE--LEKIRQSIISGK--QTFAAAAKAYSEDPGSAANGGQLGWQVPDMYA 351 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P + + + P+ K + V+++ DR + + Sbjct: 352 PAFKDKVETL-----PVDKISEPFKSTFGWHIVEVEGRRKV-DRTDAAMKNRAAQIIFNR 405 Query: 494 KTAEEVSSKANQLVL 508 K EE + +L Sbjct: 406 KFNEEAQTWLQELRA 420 >gi|163855066|ref|YP_001629364.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM 12804] gi|163258794|emb|CAP41093.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii] Length = 516 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 36/319 (11%), Positives = 87/319 (27%), Gaps = 53/319 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + + + + + G V L +++L +L+ Sbjct: 59 DGIAAVVNKDVITLREVESGAARATEDLKHR-GIQVPPPDV----LRRQVLQSLIMERLQ 113 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ + ++ I N+ + + + G+ +Y + Sbjct: 114 KQEADRLGIRVNDAQIDQAIETIAG----RNRIPVAQMRAEIEKSGVTWAQYRQSLGNDI 169 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + ++ +D + N + P+ + Sbjct: 170 RMNRLRQRAVDSNIIITDAEVDAFLKDRAHNPAAGTGFSGQPAGQRAPQPTQS------- 222 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 PE ++ IL V E E++ Sbjct: 223 -------GPEQVALAQILVRVPEGASSSEVARL--------------------------- 248 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGD 337 +K+A+ L++G F LA + G ++ L + + G Sbjct: 249 -RKKAEGLLAQLQQGGDFANLAASSSDGPEALQGGVMGARPLDGWPDLFIKAIASLQPGQ 307 Query: 338 FTPVIHGSFGYVIAHVSNI 356 + +I G+ I V + Sbjct: 308 VSGLIQSGNGFHILKVLDR 326 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 16/147 (10%) Query: 269 IRTVEQLVFPNQK--EADEAFQSLKK--------GKKFIQLAEEQGKSLS---DISLGSF 315 ++ D+A Q L++ G F +A + + + LG Sbjct: 363 QTHARHILIKTSAVMSDDQARQRLEQIRQRIVNGGASFADMARQYSQDANAPQGGDLGWV 422 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + S ++ +L G + + FG+ + V + VS + + + Sbjct: 423 NPGEMV-PSFEQAMNALP-VGGVSQPVLSPFGWHLIQVEERRE-HDVSDELQRMQARQIL 479 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402 +A ++ +L + ++ Sbjct: 480 FERRAEPAFEDWLAQLRNEAYIDNRLE 506 >gi|327312552|ref|YP_004327989.1| putative phage tail component, N-terminal domain-containing protein [Prevotella denticola F0289] gi|326944288|gb|AEA20173.1| putative phage tail component, N-terminal domain protein [Prevotella denticola F0289] Length = 474 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 66/431 (15%), Positives = 140/431 (32%), Gaps = 52/431 (12%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPE-I 269 + + + D P +++ + + I ++ DE + Y K++ + + Sbjct: 70 VQAALDAHLD--TLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGL 127 Query: 270 RTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS--- 314 ++ ++ AD + +L+KG F LA+ S G Sbjct: 128 WHCAHILIGMGQHTSKEEEAAARQLADSIYTALQKGADFADLAKRYSTDTSSAKNGGDLP 187 Query: 315 -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 K ++ +L K G+ + + FG+ I + + + ++ DI Sbjct: 188 RLQKGQTV-AEFEKAMLTL-KPGETSRPVLSPFGFHIIRMIGHE--SLPPYDSLRSDIMQ 243 Query: 374 QMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + + +++ +RL+ + A G + +E+I+ L ++ D+K Sbjct: 244 YIEMRGLRDQIIN--QRLDSLVQAGGKDI----TQEQILDRKLAELEEKDADLKR---LI 294 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 Y + LL K +Y K+ A R Sbjct: 295 REYHDGLLMVEMSNRTVWDKVAKDETALEAYFRKHRKQYKWAEPR--------------F 340 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 A V KA+ ++ +G F + L + I R+ E F + + Sbjct: 341 KGIAYHVKKKADVDAVKECVKGLPFSKWAERLRNTFNKDGNI-RIRVEKGIFRKGDNALI 399 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 G Y + V K+ +E D + ++L S +A L+ Sbjct: 400 DREVFGQKATVAPVEG--YPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRR 457 Query: 613 QYSVTVHDNLI 623 +Y V + ++ Sbjct: 458 KYKVVIDKAVL 468 >gi|297568379|ref|YP_003689723.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus AHT2] gi|296924294|gb|ADH85104.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus AHT2] Length = 559 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 114/301 (37%), Gaps = 31/301 (10%) Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 ++ L + +E + R+ +P D+ F +V V+ +R+ + E+++I Sbjct: 263 LTRQLLAELRRKYQVEINEQRLAELDINAP-----DDAFGDEVLVAT-SRQNLTERDFIA 316 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 + ++ D A + E ++ + A + + L Sbjct: 317 MVRRDMTMR----------------PDAAHAAFDEEKAAEIKDRVVDGFIAQSLTNWESL 360 Query: 214 TQWFEKYKDNYRAPEYKRISYIL---FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + +EK ++ ++ +++ L + ++++ +D ++ YE+N + P Sbjct: 361 ARGYEK-REPFKGEYDFHVNHRLSVTLERRLFADQVKVDDDMVRRHYEENLAHFSRPAHV 419 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 + ++ ++ ++ + + GK+F + +E G D + + Sbjct: 420 RL-NIITNDEGPVNQVWAEVVAGKEFSRAVQEH---FGRRIPGQEVPINHLDPRVRGVVE 475 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 LA G+ + V+ H+ + P + F+ V +I +++ K ++ + + Sbjct: 476 KLA-PGETSAPFDAQGSRVVVHLIDRVPENPLPFERVAGNIRDRLVREKTAQLRQSYLDQ 534 Query: 391 L 391 L Sbjct: 535 L 535 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 8/161 (4%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 + ++ +I+++ +L+A+YEK VE+L F N +EA A++ L+ Sbjct: 117 ALLMLKNEAVNSRIKVTEADLKAQYEKEYLP-----RWQVERLHFRNAEEAVAAWEELQA 171 Query: 293 GK-KFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 G +L A E + ++ + A+ IF+ +KG+ G ++ Sbjct: 172 GNLTVAELLAREPDEGGPVTRQVNWHRPQGIAPGWAE-IFNNMEKGEVADPEKHHGGLML 230 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 H+ +K FQ +++ + + + + ++ L Sbjct: 231 FHLKEVKGGDAEDFQRMRESLHRDVWKEQEAALTRQLLAEL 271 Score = 38.8 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 520 IGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 + + L + R N ++ G G +++F+ + P ++ ++F + Sbjct: 176 VAELLAREPDEGGPVTRQVNWHRPQGIAPGWAEIFNNMEKGEVADPEKHHGGLMLFHLKE 235 Query: 579 SKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLI 623 K G ++ + L + + L ++A L+ +Y V +++ + Sbjct: 236 VKGGDAEDFQRMRESLHRDVWKEQEAALTRQLLAELRRKYQVEINEQRL 284 Score = 37.3 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 73/532 (13%), Positives = 145/532 (27%), Gaps = 100/532 (18%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 G T++++ + F W+ G V D + Sbjct: 46 GGDTLLTIDGVEYSTEDFKGWWQ-----YWNDEGLAVPPTP-----------DLYIDWLL 89 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI------NEKEYI 152 L + E + E+A P F + F + L E + E + Sbjct: 90 LVREAERM-----------ELAGDPSFQRQTRVFLTSRALLMLKNEAVNSRIKVTEADLK 138 Query: 153 DHYTKM-LSRTDV---------------VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 Y K L R V + G + + LL + R V++ Sbjct: 139 AQYEKEYLPRWQVERLHFRNAEEAVAAWEELQAGNLTVAELLAREPDEGGPVTRQVNWHR 198 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF--------DVHEKEKKIEI 248 P P A + + K PE +LF D + ++ E Sbjct: 199 ------PQGIAPGWAEI--FNNMEKGEVADPEKHHGGLMLFHLKEVKGGDAEDFQRMRES 250 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + ++ E E + E+R Q+ Q+ A+ + L ++L+ Sbjct: 251 LHRDVWKEQEAALTRQLLAELRRKYQVEINEQRLAELDINAPDDAFGDEVLVATSRQNLT 310 Query: 309 DIS-LGSFSKEYIPDVSLADSIFSLAKKGDFTP-------------------------VI 342 + + ++ A + F K + Sbjct: 311 ERDFIAMVRRDMTMRPDAAHAAFDEEKAAEIKDRVVDGFIAQSLTNWESLARGYEKREPF 370 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVK---KDIANQMRITKA--SEKVKEDYKRLEEFLAL 397 G + + + H ++ + +VK + A S + Sbjct: 371 KGEYDFHVNHRLSVTLERRLFADQVKVDDDMVRRHYEENLAHFSRPAHVRLNIITND--E 428 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457 G + + + G+ + G+EV ++ R + + Sbjct: 429 GPVNQVWAEVVAGKEFSRAVQEHFGRRIPGQEVPINHLDPRV--RGVVEKLAPGETSAPF 486 Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 GS + V + + +P E V +++ KTA+ S +QL Sbjct: 487 DAQGSRVVVHLIDRVPENPLPFERVAGNIRDRLVREKTAQLRQSYLDQLRAR 538 >gi|261400512|ref|ZP_05986637.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970] gi|269209772|gb|EEZ76227.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970] Length = 358 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 34/273 (12%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLL---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 ++++R + + D+ + V+ ++ S A + Sbjct: 91 EVITRRRLAQAVADAKANLPKDVQIGDEELTGQVLMQLVNQSLIVQAGKRRNIQASEAEI 150 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 + + + E +R I + +S E+ E+ K+ Sbjct: 151 DAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEVDRFIEQAQKQGITL 210 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + Sbjct: 211 PEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNGTDFSGLARQYSQDAGAGNG 270 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG FS + ++ +L K G + + FG+ I ++ ++ + T ++ Sbjct: 271 GDLGWFSDGVMV-APFEAAVHAL-KPGQVSAPVRTQFGWHIIKLNEVRDAGTP-----EE 323 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 I N +R +K ++ L L G +D Sbjct: 324 RIRNSVRQYIFQQKAEQATAELLRDLHSGAYID 356 >gi|78485996|ref|YP_391921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira crunogena XCL-2] gi|121956485|sp|Q31F26|SURA_THICR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|78364282|gb|ABB42247.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira crunogena XCL-2] Length = 451 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 49/349 (14%), Positives = 109/349 (31%), Gaps = 79/349 (22%) Query: 13 VAKIFLVVLFV-PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 + K+ ++ + PF W V V + S + + Sbjct: 9 LFKLISILFILTPFFAWSAPQETLI---DRVVAVVNDNIILKSELDAEVNLAKQDLQARN 65 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 V N E S K+LD ++ Q I +G++ ++ +I K Sbjct: 66 IPVTNPEELAS-----KVLDKIILERLQLQRINQLGIKIADDELFSQIQEIA-------K 113 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191 ++ + R +++K + + + + + + R Sbjct: 114 QNNLTVIELRDRLNMSQKNGFESFRERIRQQMLFQKL---------------------RE 152 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 V+ + + + ++ + + R + + DV I +S Sbjct: 153 VEVL--------SKTQVTEDEVSNFIQ------------RQALVQSDVEYHLGHIMVS-- 190 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGKSLS 308 + +P+ R +++A E Q ++ G F Q+A E K+L Sbjct: 191 ---------LPESATPDQRDAS------KQKAQEILQKIRTGGDFSQMAVRYSEGSKALQ 235 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 LG + IP + + + + G+ + VI G+ I + + Sbjct: 236 GGDLGWLGIDQIP--TFFNDALNQLEIGETSDVIRSPVGFHIIQLQGKR 282 >gi|71281900|ref|YP_271172.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea 34H] gi|122070643|sp|Q47VK0|SURA_COLP3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|71147640|gb|AAZ28113.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea 34H] Length = 433 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 63/425 (14%), Positives = 132/425 (31%), Gaps = 91/425 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + L I Q+ N L +++D L++ + L Sbjct: 30 DRVAAIVN----TGVVLESEVNDLLVNIKQQAKKN-NQSLPSDKALRIQVMDKLINDSLL 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G++ ++ + +++K + F ++ EG + ++Y ++ L Sbjct: 85 SQMGQRMGIQISDAQLDQTLNNM----AREDKLTLAQFRQQVIDEGTSYEKYRENVRIEL 140 Query: 160 SRTDV-VGMFVGGMRPSNLLLDQAKRFYFENRS--VDYIVLNNRHVPAIADPSNAVLTQW 216 +V + S +D + E S V+Y L + + AD S L Sbjct: 141 VSGEVSRNSVRRRIFVSPQEVDNLLKVMKEQSSNNVEYH-LGHILIEFPADASQEDLAA- 198 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE-------------------- 256 ++ +L D + K S+ + A Sbjct: 199 --------AKTRATKVVELLNDGSDFAKIAITSSGDANALKGGDLGWKNINEMPTLFSEL 250 Query: 257 -YEKNKEKYFSP-----------------------EIRTVEQLVFP-----NQKEADEAF 287 +K K+ P E ++ + ++A Sbjct: 251 INDKPKDTIVGPIRTGLGYSIVKVLDIRGRKVVEVEEVKASHILIKPSIILSDEKAKSLL 310 Query: 288 Q----SLKKGK-KFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 Q + G+ F +LA+E S+ LG + D + +++ ++ KKG + Sbjct: 311 QGFLNQIDAGEATFEELAKEHSEGPTSVRGGDLGW-ADPKNYDPAFTEALATM-KKGGYH 368 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 SFG+ I + + + S Q+ +A + + +E L Sbjct: 369 KPFRSSFGWHIIKLEDRRMVDATS----------QLNENRAYQILFNRKYGMESTRWLKE 418 Query: 400 SMDEI 404 + DE Sbjct: 419 TRDEA 423 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 98/308 (31%), Gaps = 40/308 (12%) Query: 147 NEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 ++K L ++ G++ S+ LDQ + + + Sbjct: 66 SDKALRIQVMDKLINDSLLSQMGQRMGIQISDAQLDQTLNNMAREDKLTLAQFRQQVIDE 125 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 +EKY++N R + + ++I +S E+ + KE+ Sbjct: 126 GTS---------YEKYRENVR----IELVSGEVSRNSVRRRIFVSPQEVDNLLKVMKEQS 172 Query: 265 FSPEIRTVEQLVFPNQKEA---DEAFQS---------LKKGKKFIQLAEEQGKS---LSD 309 + + ++ +A D A L G F ++A L Sbjct: 173 SNNVEYHLGHILIEFPADASQEDLAAAKTRATKVVELLNDGSDFAKIAITSSGDANALKG 232 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG + +P +L + + K I GY I V +I+ V +EVK Sbjct: 233 GDLGWKNINEMP--TLFSELINDKPKDTIVGPIRTGLGYSIVKVLDIRGRKVVEVEEVKA 290 Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 I + KA ++ +++ A + +E+++ + D D Sbjct: 291 SHILIKPSIILSDEKAKSLLQGFLNQID---AGEATFEELAKEHSEGPTSVRGGDLGWAD 347 Query: 425 VKGKEVAA 432 K + A Sbjct: 348 PKNYDPAF 355 >gi|298384049|ref|ZP_06993610.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14] gi|298263653|gb|EFI06516.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14] Length = 712 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 87/726 (11%), Positives = 203/726 (27%), Gaps = 134/726 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + + V V + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G ++ ++ + ++ + V+ +++ + +GL + + Sbjct: 61 EYTEVIKLSRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119 Query: 120 -----ARSPLFHGK-DNKFSHD-----------------------------VF----VSR 140 + F F D + Sbjct: 120 GVHPLLQQTPFRNPQTGAFDKDMLNKFLVDYAKMNESQMPAQYAEQYNNMYKYWSFIQKT 179 Query: 141 LAREGINEKEYIDHYTKMLSRT----------------DVVGMFVGGMRPSNLLL----- 179 L + + EK Y K L ++ + ++ Sbjct: 180 LVQSRLAEK-YQALVAKALLSNPVEAQDAFDARVNQYDLLMAAVPYSSVVDSTIVVKESE 238 Query: 180 --------DQAKRFYFENRSVDYIVL-------NNRHVPAIADPSNAVLTQWFEKYKDNY 224 + + Y E+R + YI + + + D + A L + Y + Sbjct: 239 LKDLYNKKKEQFKQYQESRDIKYIDVQVTASAEDRAAIQQEVDEATAQLATTTDDYTS-F 297 Query: 225 RAPEYKRISYILFDVHEKEKKIEI----SNDELQAEYE-------------KNKEKYFSP 267 Y+ ++ ++ + + + Y K K + Sbjct: 298 IRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYYNGADNTINSFKVVAKTAAA 357 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEY 319 + Q+ + AD + ++K G F LA++ G++ + +S + Sbjct: 358 DSIEFRQIQVFAEDALKTKALADSIYTAIKGGANFADLAKKYGQTGETNWMSSAQYEGAQ 417 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTV-SFQEVKKDIANQMR 376 I +L S V++ G VI V+N K VK+++ Sbjct: 418 IDGDNL--KFISAINNTGVNEVVNLPLGQANVILQVTNKKAVKDKYKVAVVKREV----- 470 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + E Y +F+A + +++ + L +D + + Sbjct: 471 -EFSKETYNRAYNDFSQFIAANPTAEKMIANAEEAGYKL--LDRRDLYSSEHTIGGVRGT 527 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 ++ L F + V + P R L+ V ++ + K Sbjct: 528 KEALRWAFAAKPGDVSGLYECGESDHMVAVALVGVTPEGYRPLKAVQDQLRAEIVKDK-- 585 Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF----FGYDGISQV 552 KA +++ + D K + ++ + ++ + Sbjct: 586 -----KAEKIMADMKAANATSLDQYKAMPGAVSDSLKLVTFAAPAYVSELRSSEPLVGAY 640 Query: 553 FSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 S PI+ V ++ K+ + L M + ++ L Sbjct: 641 ASVAEMNKLSAPIKGNAGVFVLQMYGKDKLSDTFNAKDEEATLANMHAR-FASRLMNDLY 699 Query: 612 SQYSVT 617 + V Sbjct: 700 LKGKVK 705 >gi|198282817|ref|YP_002219138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665858|ref|YP_002425014.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247338|gb|ACH82931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518071|gb|ACK78657.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus ferrooxidans ATCC 23270] Length = 258 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 7/157 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + K+ I ++Q Y K + E V ++ + EAD+ LK G+KF L Sbjct: 100 EQYVKEHPIPETDIQNAYNKFVQAMGKKEF-EVRHILVKTKTEADKIMGDLKAGQKFSAL 158 Query: 300 AEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 AE+ + LG + A +I + + FGY + V Sbjct: 159 AEKYSIDKASAAHGGELGWIVPGMVV-PPFAQAIETAPIDKPV-GPVQTQFGYHVIEVQA 216 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + +K I Q++ +A++ V + + Sbjct: 217 TRALTPPPLSAMKDRIKTQLQQQEAAKFVSNLRSQAK 253 Score = 41.9 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 38/119 (31%), Gaps = 1/119 (0%) Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559 ++A++++ + K G+ F + + + + +Q Sbjct: 139 KTEADKIMGDL-KAGQKFSALAEKYSIDKASAAHGGELGWIVPGMVVPPFAQAIETAPID 197 Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 P++ Y V +V ++ + + + ++ L+SQ + + Sbjct: 198 KPVGPVQTQFGYHVIEVQATRALTPPPLSAMKDRIKTQLQQQEAAKFVSNLRSQAKINI 256 >gi|323964847|gb|EGB60314.1| ppic-type ppiase domain-containing protein [Escherichia coli M863] gi|327255033|gb|EGE66636.1| chaperone surA [Escherichia coli STEC_7v] Length = 428 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 61/391 (15%), Positives = 116/391 (29%), Gaps = 78/391 (19%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA K N + D SRLA +G+N Y + K + ++V Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 143 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 V + ++ + Y A +S+I Sbjct: 144 ------------------------NEVRRRITILPQEVESLAQQVGNQYDASTELNLSHI 179 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L + E +++ E +A + G Sbjct: 180 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGAD 211 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +LA ++ G I + + S AKKGD I G+ I V+ Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 355 NIK-PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 +++ S +S EV I + E+ + +++ + G + + K S Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKT--TFAAAAKEFS 329 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 D + G P L R+ Sbjct: 330 QDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|167568839|ref|ZP_02361713.1| survival protein SurA, putative [Burkholderia oklahomensis C6786] Length = 449 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 51/411 (12%), Positives = 119/411 (28%), Gaps = 69/411 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V ++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPIDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 IQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDVFVRDARTEL 149 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195 + + V ++ R N Q R +D Sbjct: 150 MLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSAPQADIDVA 209 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAP-----EYKRISYILFDVH 240 + A S A + + + +++P + L Sbjct: 210 QKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGQ 269 Query: 241 EKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF-----PNQKEADE---- 285 + + + E+ ++ + S V ++ ++ +A + Sbjct: 270 VNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSESQARQQLID 329 Query: 286 AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + ++ G F + A + G + LG S ++ SL + G + + Sbjct: 330 IRRQVEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQVSNPV 387 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 RTEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 437 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 35/282 (12%) Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 ID + V+ + +++D A R + A Sbjct: 76 IDQLRAQVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARI---E 132 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 A W D + + E + KI +S+ E+ + + + Sbjct: 133 AQGVPW-----DVFVRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQD 187 Query: 271 -TVEQLVFPNQKEADEA-------------FQSLKKGKKFIQLAE---EQGKSLSDISLG 313 +E + A +A Q+L G F +LA+ E + LG Sbjct: 188 LRLEHIFVKAPTSAPQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLG 247 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVK---- 368 S +P + D++ L + G P ++ G+ I + + + S +VS K Sbjct: 248 FKSPSSLP-SDVVDAVSKL-RPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQT 305 Query: 369 --KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + I ++ K+ + ++ + + G ++ +R Sbjct: 306 HVRHILLRVGEGKSESQARQQLIDIRRQVEAGGDFEKFARTY 347 >gi|91202462|emb|CAJ72101.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein surA precursor) [Candidatus Kuenenia stuttgartiensis] Length = 328 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 100/272 (36%), Gaps = 28/272 (10%) Query: 142 AREGINEKEYIDHYTKML--SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 AR +E+E+ + K+L + +++ + + + +DY Sbjct: 56 ARSKYSEEEFAKNIEKILEYTLEELIDRKLLVKEAQKVFGTDISMMDEVQKELDY----- 110 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR------ISYILFDVHEKEKKIEISNDEL 253 A + L++++E + P ++ I K+++ L Sbjct: 111 --FLKGAVENVGSLSKFYEIAESQGINPIERKTELKEDIMIDKIIKENVNNKVKVPPKLL 168 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFP------NQKE----ADEAFQSLKKGKKFIQLAEEQ 303 + Y +N +++ + + ++ ++ + A++ L G+ F +A Sbjct: 169 RRYYMENMDEFCQKKEIKLRHIMIKFSTHDNDKAKTYAFAEKIMTLLSTGEDFSSVARSY 228 Query: 304 GKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + + G +S + I L D + SL K +++ + GY I V I+P Sbjct: 229 SEGPNAEKGGEWSFDEIQGLRKELRDVVNSL-KDNEYSKITESPVGYHIFKVELIRPEVV 287 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 F++V+ +I ++ + K+ L E Sbjct: 288 KKFEDVQDEIYKKLYREEIGRLKKKYILDLRE 319 >gi|322834453|ref|YP_004214480.1| SurA domain protein [Rahnella sp. Y9602] gi|321169654|gb|ADW75353.1| SurA domain protein [Rahnella sp. Y9602] Length = 431 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 75/437 (17%), Positives = 129/437 (29%), Gaps = 84/437 (19%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +ILD L+ Q +G+ V IA + N S D SR Sbjct: 62 DDATLRHQILDRLIMDQIQLQMATRMGITPTDQDVDKAIAGI----AQQNNISVDQLRSR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 LA +G+N Y K + + +R S + R V + Sbjct: 118 LAYDGMNYSTYRTQIRKEM--------IISEVRNSEV-----------RRRVTILPQEVD 158 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260 + N ++ +S+IL + E + ++ + E Sbjct: 159 QLAKQVAAQNGSGAEF--------------NLSHILLPLPENPTQDQVDSAE-------- 196 Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 + A + L G F +LA + G+ + Sbjct: 197 --------------------QLAKKIVADLNNGADFGKLAITYSADSQALKGGNMGWGKL 236 Query: 321 PD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD---IANQM 375 + SL S A+KG I G+ I V++I+ TVS EV + + Sbjct: 237 QELPSLFAQALSTAQKGQVIGPIRSGVGFHILKVNDIRGDNKTVSVTEVHARHILLKPSV 296 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +T A + K +++ + G + K +S D + G P Sbjct: 297 VMTDAQARAK--LEQVAADIKSGK--ATFADEAKQLSQDPGSANQGGDLGWASPDMYDPA 352 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTV 493 L + K ++ P S + + I R D+ + Sbjct: 353 FRDALMNL--------KKGEISAPVHSSFGWHLIQLIDTRQVDKTDAAQKERAYRMLFNR 404 Query: 494 KTAEEVSSKANQLVLEY 510 K AEE + + E Sbjct: 405 KFAEEAQTWMQEQRAEA 421 >gi|167561603|ref|ZP_02354519.1| survival protein SurA, putative [Burkholderia oklahomensis EO147] Length = 452 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 51/411 (12%), Positives = 119/411 (28%), Gaps = 69/411 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V ++ L ++L+ +V Sbjct: 42 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPIDQ-----LRAQVLNQMVLERIQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 97 IQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDVFVRDARTEL 152 Query: 160 SRTDV---------------VGMFVGGMRPSNLLLDQAKRFY---------FENRSVDYI 195 + + V ++ R N Q R +D Sbjct: 153 MLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSAPQADIDVA 212 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN----------YRAP-----EYKRISYILFDVH 240 + A S A + + + +++P + L Sbjct: 213 QKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGQ 272 Query: 241 EKEKKIEISND-ELQAEYEKNKEKYFSPE-----IRTVEQLVF-----PNQKEADE---- 285 + + + E+ ++ + S V ++ ++ +A + Sbjct: 273 VNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSESQARQQLID 332 Query: 286 AFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + ++ G F + A + G + LG S ++ SL + G + + Sbjct: 333 IRRQVEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDGQVSNPV 390 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 391 RTEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 440 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 35/282 (12%) Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 ID + V+ + +++D A R + A Sbjct: 79 IDQLRAQVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARI---E 135 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 A W D + + E + KI +S+ E+ + + + Sbjct: 136 AQGVPW-----DVFVRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQD 190 Query: 271 -TVEQLVFPNQKEADEA-------------FQSLKKGKKFIQLAE---EQGKSLSDISLG 313 +E + A +A Q+L G F +LA+ E + LG Sbjct: 191 LRLEHIFVKAPTSAPQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLG 250 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVK---- 368 S +P + D++ L + G P ++ G+ I + + + S +VS K Sbjct: 251 FKSPSSLP-SDVVDAVSKL-RPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQT 308 Query: 369 --KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + I ++ K+ + ++ + + G ++ +R Sbjct: 309 HVRHILLRVGEGKSESQARQQLIDIRRQVEAGGDFEKFARTY 350 >gi|268315855|ref|YP_003289574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] gi|262333389|gb|ACY47186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] Length = 552 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 8/162 (4%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + E + D L+A Y+ ++E + P R V +++ P + EA L F +L Sbjct: 375 QQVESGAAVPEDTLRAFYKAHREDFRMPARRAVWEILVPTEAEAQRIRTLLTA-TPFEEL 433 Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A G + + LG ++ + + ++F+ A++G+ + + GYV+ V Sbjct: 434 ARHYSRRPGAAATGGYLGFVAEAQLG--AAGKAVFA-AREGEVLGPLRIADGYVLLKVGA 490 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 +P ++F+E + I Q+R + +E L A Sbjct: 491 EQPERPMTFEEARPLIERQLRPFFVRRRWQEHLAELAARHAD 532 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 60/399 (15%), Positives = 121/399 (30%), Gaps = 75/399 (18%) Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + ++ L R G + ++ + V LD+ + E R+V Sbjct: 32 FREAYLDYLLRTGQTDS---PRLRRLFLEQMIREALVA-YEARRQGLDRTPAYEEEARAV 87 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + +L + + +R+ Y + + E Sbjct: 88 ETKLL---------------VEAY------------ARRVLY---------DTVRVREAE 111 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLS 308 L + + L P + A+ + L+ G F +LA + + S Sbjct: 112 LAEAFVRINT------EVRARHLWAPTRAAAESLYARLQAGASFEELAAGVFRDTALARS 165 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--KPSFTVS-FQ 365 LG FS + + D + D F L + G+ + + ++GY I V++ KP T + F Sbjct: 166 GGDLGWFSFDEM-DPAFEDVAFRL-RPGEISSPVRTAYGYSIIQVTDRFTKPILTETEFA 223 Query: 366 EVKKDIANQMR---ITKASEKVKEDYKRLEEFLALGTSM----DEISRREKIVSIDLPLV 418 + + + +R A E + ++ D I+ R ++ Sbjct: 224 QKRPLLERYLRYRKQQAAREACARSLADSLQIRFHEATLRRLYDRIAGRVTQEEMEGTTE 283 Query: 419 DF-------AGKDVKGKEVAAIPYKEQL--LFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 D+ G + ++EQ R + S + G + + Sbjct: 284 DWLQEPLLTFGPAAERVTWTVADFREQARRTSRAQREAAARSPEALEEFARGLVVRHVLA 343 Query: 470 ESIPA----RDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 E A R + + W ++V S A Sbjct: 344 ERARAAGLHRSPAFAQARQEALDRWLYRYVRQQVESGAA 382 >gi|332534336|ref|ZP_08410179.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis ANT/505] gi|332036246|gb|EGI72719.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis ANT/505] Length = 431 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 53/378 (14%), Positives = 114/378 (30%), Gaps = 85/378 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + S + ++ + + L + ++ LV+ A + Sbjct: 28 DKVIGVVNQGVILKSEVDTIIDRVKKQAQEQ-----GQQLPKDETLRVQAVERLVNQALM 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +GL+ ++ +A + D+ + G + + Y + K + Sbjct: 83 MQMAERMGLQISDSQLDQTLANMA---KEQGGTIADL-RRTIEGSGESFQAYREEIRKEI 138 Query: 160 SRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + V V + S +D + Sbjct: 139 TTQQVTRASVDRRIYISEQEVDNLLKIME------------------------------- 167 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ E I +IL D+ EI++ + + Sbjct: 168 ---TQGQSAEEYDIGHILIDIPNDATADEIADAKTR------------------------ 200 Query: 279 NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 AD+ + L G++F ++A K+L LG +P + A+++ KK Sbjct: 201 ----ADKVIELLNDGQEFKRIAISSSSGSKALEGGQLGYMGINEMPSL-FAEAVKG-QKK 254 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390 G + G+ I V +++ V EV+ I + KA + K Sbjct: 255 GAIVGPLRSGAGFHIIKVQDVRGLQVVETTEVRSRHILIKPSIILSEEKARSMLAGFAK- 313 Query: 391 LEEFLALGTSMDEISRRE 408 + A E+++ Sbjct: 314 --DLRAGTADFGELAKEY 329 >gi|330996747|ref|ZP_08320619.1| hypothetical protein HMPREF9442_01706 [Paraprevotella xylaniphila YIT 11841] gi|329572469|gb|EGG54120.1| hypothetical protein HMPREF9442_01706 [Paraprevotella xylaniphila YIT 11841] Length = 716 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 61/472 (12%), Positives = 144/472 (30%), Gaps = 85/472 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L+ IR ++ + I + V F+ +A+ S+ +S V + +++ F Sbjct: 4 LQKIR--AKGPLLVIVIGVALFAFI---AEEAMRSIQSASNESKQQVGEIYGERISVHEF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 N + ++ G +++ + L ++ + V+ ++ E++GL + Sbjct: 59 QNLVDEYAEVVKFTSGNSALNDQ-QLTQLRDQVWNTYVNNKLIEHEAEELGLTVTDAEIQ 117 Query: 117 GEI--------ARSPLFHGKDNKFSHDVFVSRLAR-EGIN------EKEYIDHY------ 155 I ++P + + +F +V L EG+ EY+D+Y Sbjct: 118 SIISEGNSPILMQTPFRNEQTGRFDANVLKKFLTDYEGMKTKSEQMPAEYMDYYNSLYKF 177 Query: 156 --------TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIA 206 + + M + ++ A + + + Sbjct: 178 WMFIEKTLRQESLAQKYQVLLGKAMLGNKIIDKAAFEARANESDIIMAAVPYSTINDKDI 237 Query: 207 DPSNAVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + L + + K+ ++ E + I +I V + ++ Sbjct: 238 KVEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDM------------ 285 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325 E +L G ++ E G +++ L SK P+ + Sbjct: 286 ------------------AETATALAAGGDIAKIVRESGSTINYSPL-PVSKNIFPN-DI 325 Query: 326 ADSIFSLAKKGDFTPV--IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 A + S+A G G I V N + + Sbjct: 326 ASQLDSMA-VGQMKAPYYYAGDNTMNIIKVINKISAPD------SIQLRQIQVAGADMNA 378 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAI 433 +++ + L G + D I+++ + ++ G + G + I Sbjct: 379 IQKTADSIMTALHNGVAFDSIAKKYNQTGEKTWITSRNYEGAPLDGDNLKFI 430 >gi|225154955|ref|ZP_03723452.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae bacterium TAV2] gi|224804314|gb|EEG22540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae bacterium TAV2] Length = 332 Score = 83.1 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 24/216 (11%) Query: 210 NAVLTQWFEKYKD---NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 N L Q ++++ + + + S +LQA YE N+ + Sbjct: 106 NEALAQKWDQHPAFTAQFEKLRENALIESYLQSVSQPPADFPSEADLQAVYEANRAALTA 165 Query: 267 PEIRTVEQLVFPNQKEADEAFQS-------------LKKGKKFIQLAE----EQGKSLSD 309 P + Q+ + AD A Q +KG F LA E+ + + Sbjct: 166 PRQVRLAQIYIAAPRSADSATQDEARARLDDVKKKLAQKGADFAALARVESDEKRSAANG 225 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG + + D++ +LA G + G+ I ++ + ++ EV+ Sbjct: 226 GELGWLTDGQF-RPEILDTLKNLA-AGQVGEPLRLDDGWHILKALEVREARPLTLDEVRS 283 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +A ++R +A + RL E +++E++ Sbjct: 284 QLAQRLRAERAQANRQTHLARLLEK--NPVTINELA 317 Score = 41.1 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 11/143 (7%) Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 A+ +A ++ + K+L + A ++ + EK + + + + Sbjct: 177 AAPRSADSATQDEARARLDDVKKKLAQKGADFAALARVESDEKRSAANGGELGWLTDGQF 236 Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486 E+ + L DG + ++ E AR L+EV + + Sbjct: 237 RPEILDTLKNLAA----------GQVGEPLRLDDG-WHILKALEVREARPLTLDEVRSQL 285 Query: 487 KKDWKTVKTAEEVSSKANQLVLE 509 + + + + +L+ + Sbjct: 286 AQRLRAERAQANRQTHLARLLEK 308 >gi|161830191|ref|YP_001595995.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii RSA 331] gi|161762058|gb|ABX77700.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii RSA 331] Length = 321 Score = 82.7 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S ++ Q+ K++LD L+ Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + ++ + + +AR + N S +L +EGI+ KE+ K L Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + + + + + ++ Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + EY I+ IL + + +I++ Sbjct: 176 HAGQIASKEY-HIATILIPLPASATQAQINHA---------------------------- 206 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +A + L+KG F + LG S + +P V ++ + K + T Sbjct: 207 KGKAALILKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I G+ I + + + TVS + I + K + +++ +L Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309 >gi|76810003|ref|YP_332285.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1710b] gi|167718164|ref|ZP_02401400.1| putative survival protein SurA [Burkholderia pseudomallei DM98] gi|167737195|ref|ZP_02409969.1| putative survival protein SurA [Burkholderia pseudomallei 14] gi|167822803|ref|ZP_02454274.1| putative survival protein SurA [Burkholderia pseudomallei 9] gi|167844378|ref|ZP_02469886.1| putative survival protein SurA [Burkholderia pseudomallei B7210] gi|167901377|ref|ZP_02488582.1| putative survival protein SurA [Burkholderia pseudomallei NCTC 13177] gi|167909606|ref|ZP_02496697.1| putative survival protein SurA [Burkholderia pseudomallei 112] gi|167917621|ref|ZP_02504712.1| putative survival protein SurA [Burkholderia pseudomallei BCC215] gi|226196777|ref|ZP_03792357.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9] gi|242314929|ref|ZP_04813945.1| putative chaperone surA [Burkholderia pseudomallei 1106b] gi|254181756|ref|ZP_04888353.1| putative survival protein SurA [Burkholderia pseudomallei 1655] gi|254196558|ref|ZP_04902982.1| putative survival protein SurA [Burkholderia pseudomallei S13] gi|254296203|ref|ZP_04963660.1| putative survival protein SurA [Burkholderia pseudomallei 406e] gi|122070636|sp|Q3JVW8|SURA_BURP1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|76579456|gb|ABA48931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1710b] gi|157805631|gb|EDO82801.1| putative survival protein SurA [Burkholderia pseudomallei 406e] gi|169653301|gb|EDS85994.1| putative survival protein SurA [Burkholderia pseudomallei S13] gi|184212294|gb|EDU09337.1| putative survival protein SurA [Burkholderia pseudomallei 1655] gi|225931308|gb|EEH27315.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9] gi|242138168|gb|EES24570.1| putative chaperone surA [Burkholderia pseudomallei 1106b] Length = 448 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|255007876|ref|ZP_05280002.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12] gi|313145584|ref|ZP_07807777.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12] gi|313134351|gb|EFR51711.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12] Length = 712 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 79/637 (12%), Positives = 189/637 (29%), Gaps = 89/637 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G ++ ++ + ++ + V+ +++ + +G+ + I Sbjct: 61 EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRLAR---EGIN--EKEYIDHYTKMLSRTDVVGMF 168 + F F D+ L+ +Y+++Y M + Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLSDYSKMDKTKMPSQYVEYYEGM---HKLWSFV 176 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + S L ++ + +A F+ + Sbjct: 177 EKTLIQSRLAEKYQ------------ALVTKALFSNPVEAQDA-----FDARVN------ 213 Query: 229 YKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEA 286 + I + EL+ Y K KE++ E R ++ + A++ Sbjct: 214 QSDVLLAAVPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDK 273 Query: 287 FQSLKKGKKFI-QLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSL---AKKGDF 338 ++ + QLA G + I Y+ + + + A G Sbjct: 274 AAIQQEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKRAFPSDVVARMDSASVGQV 333 Query: 339 TPVIHGSFGYVI--AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + I V + + V+ A KV + + Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAA----DSVQFRQIQVYAEDAAKTKV--LADSIYTAIK 387 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G ++++ + A + L F + +++ V Sbjct: 388 GGADFTALAKKYG-------QTGESNWISSANYENAQIDGDNLKFITTINNLGVNELSNV 440 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 AL G+ + +Q+ + +D V + V ++E +KA ++ Sbjct: 441 ALGQGNII-LQVTDKKAVKD------KYKVAVIKRAVDFSKETYNKAYNDFSQFIAANPT 493 Query: 517 FRDIGK---NLGASLLTTNQINRMDNENKFFGYDGISQV----FSGPVEMV-KCFPIENG 568 + G LL N + +E+ G G + F+ V + Sbjct: 494 VEKMAANAEEAGYKLLERNDL--YSSEHGIGGIRGTKEALKWTFAAKPGEVSGLYECGES 551 Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605 +V + N ++E + ++ + + +++ Sbjct: 552 DRMLVVGLVNV----IEEGYRPLAQVQDQLRAEIIRD 584 Score = 67.3 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 112/369 (30%), Gaps = 28/369 (7%) Query: 262 EKYFSPEIRTVEQLVFPNQKEA------DEAFQSLKKGKKFIQLAEEQGKS--LSDISLG 313 K + + Q+ + A D + ++K G F LA++ G++ + IS Sbjct: 352 SKVAAADSVQFRQIQVYAEDAAKTKVLADSIYTAIKGGADFTALAKKYGQTGESNWISSA 411 Query: 314 SFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 ++ I ++ +I +L + + V G G +I V++ K VK Sbjct: 412 NYENAQIDGDNLKFITTINNLG-VNELSNVALGQ-GNIILQVTDKKA--------VKDKY 461 Query: 372 ANQM---RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 + + + E + Y +F+A ++++++ + L + G Sbjct: 462 KVAVIKRAVDFSKETYNKAYNDFSQFIAANPTVEKMAANAEEAGYKLLERNDLYSSEHG- 520 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 + I ++ L F + V + I R L +V ++ Sbjct: 521 -IGGIRGTKEALKWTFAAKPGEVSGLYECGESDRMLVVGLVNVIEEGYRPLAQVQDQLRA 579 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548 + K AE++ + + K+ + S+ Sbjct: 580 EIIRDKKAEKIMADMKAANATSFDQYKSM---ANAVSDSVKHVTFAAPAYVAALRSSEPL 636 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608 + S PI+ V +V K + M+ L + Sbjct: 637 VGAYASVADINKLSAPIKGNGGVFVLQVYAKDKLNETFDAKAEEVTLENMHARLAARFMN 696 Query: 609 YLKSQYSVT 617 L + V Sbjct: 697 DLYLKGDVK 705 >gi|215919309|ref|NP_820955.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii RSA 493] gi|206584194|gb|AAO91469.2| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493] Length = 321 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S ++ Q+ K++LD L+ Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + ++ + + +AR + N S +L +EGI+ KE+ K L Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + + + + + ++ Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + EY I+ IL + + +I++ Sbjct: 176 HAGQIASKEY-HIATILIPLPASATQAQINHA---------------------------- 206 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +A + L+KG F + LG S + +P V ++ + K + T Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I G+ I + + + TVS + I + K + +++ +L Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309 >gi|88704591|ref|ZP_01102304.1| Chaperone surA [Congregibacter litoralis KT71] gi|88700912|gb|EAQ98018.1| Chaperone surA [Congregibacter litoralis KT71] Length = 400 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 49/388 (12%), Positives = 117/388 (30%), Gaps = 57/388 (14%) Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 + ++ + ++Q I V + + LD L+ Q + G+ ++ Sbjct: 17 SELRERMAAVNQNIAAQGAEAPPEDVLIRE-TLDRLILENIQIQMGQRFGVRISDAQLNQ 75 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP-SN 176 + R N + + F L +EG + E ++ + + V V + S+ Sbjct: 76 AMGRIAA----QNGLTQEQFAVLLEQEGRSYMEIRENIEREMIIQRVQQGNVNQLIEISD 131 Query: 177 LLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQ---WFEKYKDNYRAPEYKRI 232 ++ + V + + +P +D S+A + + + E + R E Sbjct: 132 QEIENYLSTEEGQKLVQPEYRIIHALLPISSDTSDAEIEKNRTFSEGLVERIRDGESFEA 191 Query: 233 SYILFDVHEKEKKIEI---SNDELQAEYEKNKEKYFSPE--------------------- 268 ++ +L + +++ E Sbjct: 192 VMTSVPQEYAFTGGDLGWRKLADLPSLFQEVAPTLSRGETADVFQSPSGLHIVTMADQRG 251 Query: 269 -------IRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---- 308 V ++ + A E + ++ G+ F LA E + + Sbjct: 252 GGDMTINQTKVRHILIEPSEILTDDQARDLAAELRERVEAGEDFGDLAREYSEDIGSAAE 311 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 LG S + + + S + G +P + FG+ I V + K Sbjct: 312 GGDLGWTSPGQMV-PEFENMMAS-TEVGVVSPPVRSQFGWHILEVLERREKDITE-DMRK 368 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLA 396 + + K E++ +++ + Sbjct: 369 AQVREFLHGRKYQEELDAWLRKIRDEAF 396 >gi|209515375|ref|ZP_03264241.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] gi|209504095|gb|EEA04085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. H160] Length = 295 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 9/160 (5%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQ 298 + + ++ +L AEY+K K E R +V ++ EA L + K F + Sbjct: 133 KDFFASHKPTDAQLNAEYDKVKAAAAGNEYR-ARHIVVKSEDEAKAIIAKLNQDPKAFSE 191 Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA LG F + A ++ L K I FGY + V Sbjct: 192 LASADSLDPVSKAKGGDLGWFDPARMV-PEFASAVQKLGKGQISQEPIKSQFGYHVIVVD 250 Query: 355 NI--KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 +I K F++VK +A + + + + + + Sbjct: 251 DIRSKADSVPPFEQVKDSLAAHFEQEELLKALSDMKAQAK 290 >gi|299067923|emb|CBJ39137.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Ralstonia solanacearum CMR15] Length = 496 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 50/414 (12%), Positives = 109/414 (26%), Gaps = 77/414 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + N + L ++L+ L+ Sbjct: 88 DEVVAVVNTDIITRRELLDRADLVERTLQSQ-----NRQIPARPDLLGEVLEQLILERVQ 142 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+LA+ G+ +Y + + + Sbjct: 143 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDKYREDLRQEI 198 Query: 160 SR------------------------TDVVGMFVGGMR---PSNLLLDQAKRFYFENRSV 192 GG + +L+ A+ E ++ Sbjct: 199 LLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASGGALEYNVAQILVPVAEDASAEQKAA 258 Query: 193 ----------------DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 D+ L A L + R P + + Sbjct: 259 ARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGEL-----GLRPIGRLPAQFANAVVD 313 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQK--EADEAFQS 289 + ++ S +K + V ++ AD+A + Sbjct: 314 LKPGQVVDQVIESPAGFHVLKLVDKRAQGTAVTAKVAQTQVRHILIKTGPTMSADDARRQ 373 Query: 290 LKK-------GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 L G F A + S LG S + ++ L K G+ + Sbjct: 374 LAGLRDRIVHGYDFGDAARRYSQDNSASAGGELGWVSPGQLV-PEFEQAM-GLLKPGEVS 431 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + FG + V + + + + +R K ++ ++L + Sbjct: 432 QPVQSQFGLHLIQVEGRREAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 484 >gi|167814327|ref|ZP_02446007.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 91] gi|122070637|sp|Q63X78|SURA_BURPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 448 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|68304918|gb|AAY89929.1| predicted survival protein surA [uncultured bacterium BAC13K9BAC] Length = 441 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 53/415 (12%), Positives = 122/415 (29%), Gaps = 58/415 (13%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 ++ + FL + + V V S N + + R Sbjct: 42 LIILFFLTI---SNMAHAMEDKIIAVVNDNVVLKSELNNKLTTI---------NLEGTSR 89 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + L ++ILD L+ + L+Q +G+ + I +D + Sbjct: 90 LEAAKLKREILDQLIEESLLEQAANRLGIYISDIDLQNRIKLI----AQDKNLTVLQLKE 145 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSV------ 192 + + I+ Y+ + K + ++ F S + + + + Sbjct: 146 AVESQNIDYLRYLKNLRKRIQIEELFRIQFTSRAYVSEEEIQSYLKTNDSLKIINNIMTV 205 Query: 193 -DYIVLNNRHVPAIADPS-------NAVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKE 243 +Y++ + + I L + +Y + + I + + Sbjct: 206 REYLIEDENNKLDITKVDILVRNIKTNGLEDTYNRYPNIKIKINNLSEIPFTKL-PDIYQ 264 Query: 244 KKIEISND----ELQAE-----YEKNKEKYFSPEIRTVEQLVFPNQ-----KEADEAFQS 289 + I + +L + + E V ++ K E F Sbjct: 265 NNLNILDQNSYTDLFKTGKGYVFLEVVSSSMYSEEYKVSHILLKTNPMENLKSLKERFYK 324 Query: 290 LK----KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 +K K F A++ + SLG +K+ + I S K G + Sbjct: 325 IKRDATKENNFSDYAQKYSLDKASAIKGGSLGWINKKLVV-PEFGR-IMSNMKIGGISEP 382 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 FG+ I + + + +S + + ++ K +E +L++ Sbjct: 383 FKTQFGWHILQLEDKR-IKNISNDVARNQVVAILKERKVKVAKREWLAKLKDQAY 436 >gi|327398211|ref|YP_004339080.1| SurA domain-containing protein [Hippea maritima DSM 10411] gi|327180840|gb|AEA33021.1| SurA domain protein [Hippea maritima DSM 10411] Length = 287 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 38/351 (10%), Positives = 95/351 (27%), Gaps = 107/351 (30%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 + +V + + N V +L+ ++ + Q+ Sbjct: 31 IATVNGKPITTYELQN------------------LAGFYRVNNLNTLLNEVIDDYLIRQY 72 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 ++G+ V I + ++E E++ + Sbjct: 73 ANNMGIIVSDEDVEKYIQQMAE------------------ANNLSEDEFLAKLKE----- 109 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH--VPAIADPSNAVLTQWFEKY 220 SN+ L+ +Y E + + + ++ + ++ + Sbjct: 110 ------------SNIDLN----YYKEGIKLRLYRIKFARRVFLSSIKITDKDIENYYNLH 153 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 KD ++ + + + + Sbjct: 154 KDKFKGKSKVLV---------------------------------------LSIITLGDL 174 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + A + + LKKGK F L + + + L + SL K +T Sbjct: 175 ETAKKVYSLLKKGKSFEDLLNKYSTTKESTRKVPIE---TLNPYLQKKLLSL-KPNQYTD 230 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +I + + I + + + +K I N + + + K+K K + Sbjct: 231 IIQSAGKFYIVKLLGTEEG-----ESIKDTIRNTLIDQQITAKLKSWLKMI 276 >gi|154706423|ref|YP_001425383.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway 5J108-111] gi|154355709|gb|ABS77171.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway 5J108-111] Length = 321 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S ++ Q+ K++LD L+ Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + ++ + + +AR + N S +L +EGI+ KE+ K L Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + + + + + ++ Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + EY I+ IL + + +I++ Sbjct: 176 HAGQIASTEY-HIATILIPLPASATQAQINHA---------------------------- 206 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +A + L+KG F + LG S + +P V ++ + K + T Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I G+ I + + + TVS + I + K + +++ +L Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309 >gi|303257435|ref|ZP_07343448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] gi|302859792|gb|EFL82870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales bacterium 1_1_47] Length = 259 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 5/176 (2%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + Y V + +++ +L+ YE+ K++Y P V ++ ++EA + Sbjct: 79 ERQTEIYSAELVRKNAAAHPLTDADLKKTYEEVKKQY-DPNEIKVRHILVKTEQEAKDII 137 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 +SL G F +A+E+ + G + I A++ +L K H Sbjct: 138 KSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNIRRIAIPGFAETAMALNKGALLPVPFH 197 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + GY + + + + SF +K I N +A + + + K + A Sbjct: 198 SALGYHVIQLQDKREVPLPSFDALKPQIQNLAAQRQAQQYMADLMKNAKIAEAAPA 253 >gi|163790772|ref|ZP_02185198.1| peptidylprolyl isomerase [Carnobacterium sp. AT7] gi|159873952|gb|EDP68030.1| peptidylprolyl isomerase [Carnobacterium sp. AT7] Length = 339 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 14/165 (8%) Query: 226 APEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 PE + I L + K + + +E+Q Y+ ++ ++ +A Sbjct: 100 TPEKYKDTIRLNLLIEAAVKDKTKFTKEEIQTAYDAYVPS------VKAAHILVEDEAKA 153 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTP 340 + L G F +LA+E + + G +FS + ++ ++L + T Sbjct: 154 KDLIAQLNDGADFAKLAKENSADTATAANGGEVTFSSGEMV-PEFEEAAYALKEGEMTTE 212 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 + +G+ I + I + +E I +Q+ TK ++ Sbjct: 213 PVATEYGFHIIKM--IDKPEKGTLKEETDTIKDQLLQTKLADSAY 255 >gi|126441500|ref|YP_001057745.1| putative survival protein SurA [Burkholderia pseudomallei 668] gi|134279812|ref|ZP_01766524.1| putative survival protein SurA [Burkholderia pseudomallei 305] gi|217419752|ref|ZP_03451258.1| putative chaperone surA [Burkholderia pseudomallei 576] gi|226830776|ref|YP_001064989.2| putative survival protein SurA [Burkholderia pseudomallei 1106a] gi|237810895|ref|YP_002895346.1| chaperone SurA [Burkholderia pseudomallei MSHR346] gi|254258573|ref|ZP_04949627.1| putative chaperone surA [Burkholderia pseudomallei 1710a] gi|126220993|gb|ABN84499.1| putative chaperone surA [Burkholderia pseudomallei 668] gi|134249012|gb|EBA49094.1| putative survival protein SurA [Burkholderia pseudomallei 305] gi|210148311|gb|ABN91359.2| putative chaperone SurA [Burkholderia pseudomallei 1106a] gi|217397056|gb|EEC37072.1| putative chaperone surA [Burkholderia pseudomallei 576] gi|237504702|gb|ACQ97020.1| chaperone SurA [Burkholderia pseudomallei MSHR346] gi|254217262|gb|EET06646.1| putative chaperone surA [Burkholderia pseudomallei 1710a] Length = 450 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 41 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 96 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 151 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 152 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 211 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 212 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 271 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 272 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 331 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 332 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 389 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 390 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 438 >gi|237729350|ref|ZP_04559831.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2] gi|226909079|gb|EEH94997.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2] Length = 428 Score = 82.7 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 116/369 (31%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ L Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFY-FENR 190 + D SRLA++G++ Y K ++ ++V + +D + +N Sbjct: 110 TLDQMRSRLAQDGLSYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQ-----------------------WFEKYKDNY--- 224 + + L++ +P +P++ + + + Sbjct: 170 ASTELNLSHILIPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----EQ 274 R E I +K I + K + + +V Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARH 289 Query: 275 LVFP-----NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++A + + F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDQQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG + +H SFG+ + + + + + + K + K S Sbjct: 350 DPAFRDALTKL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 17/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR+ K ++ +E +++ I E+ A ++ + + + ++ P Sbjct: 126 STYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPLPE 185 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 + +A + G F +LA + G I + + Sbjct: 186 NPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQ 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386 S AKKGD I G+ I V++++ S ++S EV I + ++ + Sbjct: 246 ALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTDQQARL 305 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +++ + G + + K S D + G P L ++ Sbjct: 306 KLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKL 360 >gi|53718302|ref|YP_107288.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei K96243] gi|52208716|emb|CAH34652.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei K96243] Length = 450 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 41 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 96 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 151 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 152 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 211 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 212 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 271 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 272 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 331 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 332 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 389 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 390 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 438 >gi|89100857|ref|ZP_01173708.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911] gi|89084443|gb|EAR63593.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911] Length = 289 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 27/172 (15%) Query: 202 VPAIADPSNAVLTQWFEKYKDN-------------YRAPE--YKRISYILFDVHEKEKKI 246 + ++ L + ++ K Y E + L K + Sbjct: 66 LSEKYKVTDEELNEKIDELKQQLGANFEMALAQYGYEDEEDLKETFKTGLLQEKAAIKDV 125 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EE 302 E + E++ Y+ K + ++ ++K A E + L +G KF LA ++ Sbjct: 126 EATEKEVKEYYDNYKPEI------KARHILVEDEKTAKEVKKKLDEGAKFEDLATEYSQD 179 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 G + + LG F + ++ ++L + + + GY I + Sbjct: 180 PGSAANGGDLGWFGAGKMV-PEFEEAAYAL-DVNEISEPVKTEHGYHIIQTT 229 >gi|83749338|ref|ZP_00946335.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551] gi|83724016|gb|EAP71197.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551] Length = 495 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 110/408 (26%), Gaps = 66/408 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + + RA +G ++L+ L+ Sbjct: 88 DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 142 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+LA+ G+ +Y + + + Sbjct: 143 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDKYREDLRQEI 198 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + V ++ + +D + + N + + + Sbjct: 199 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 258 Query: 219 KYKDN------------------------------------YRAPEYKRISYILFDVHEK 242 + K R P + + + Sbjct: 259 RGKAESLLKQAQGGADFAKLARDSSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 318 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292 ++ S +K + V ++ AD+A + L Sbjct: 319 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 378 Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G F A + S LG S + ++ +L K G+ + + Sbjct: 379 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 436 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 437 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 483 >gi|72386957|ref|XP_843903.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma brucei TREU927] gi|62359031|gb|AAX79480.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative [Trypanosoma brucei] gi|70800435|gb|AAZ10344.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 122 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326 V ++ A EA + +K G+ F +A + + S LG ++ + + Sbjct: 33 KVKVRHILCEKLSRALEALEKIKAGESFANVARDYSEDKARSGGDLGWVTRGAMVG-EFS 91 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + F+L K G + FGY I V + + Sbjct: 92 EKAFALPKGGMTQEPVKTKFGYHIIFVEDKQ 122 >gi|291616238|ref|YP_003518980.1| SurA [Pantoea ananatis LMG 20103] gi|291151268|gb|ADD75852.1| SurA [Pantoea ananatis LMG 20103] gi|327392689|dbj|BAK10111.1| chaperone SurA precursor [Pantoea ananatis AJ13355] Length = 431 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 46/377 (12%), Positives = 107/377 (28%), Gaps = 60/377 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ + A + Q + GL+ ++ I N+ Sbjct: 54 KQAGQQLPDDKTLRHQILEREIMDAIILQLGDKAGLQITDQQLDQAIQNIAA----QNRM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 S D SRLA +G+N Y K + ++V + +D + + Sbjct: 110 SVDQLRSRLAYDGMNYNTYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAQQVGAQNT 169 Query: 192 ------VDYIVLNNRHVPAIADPSNAV------------------LTQWFEKYKDNYRAP 227 + +I+L P + L + + Sbjct: 170 QGTEMNISHILLPLPENPTQQQVDDQEKLAKQLITELKGGADFGKLAVTYSADSQALKGG 229 Query: 228 EYKRISYILFDVHEKEKKIEISNDEL-------------QAEYEKNKEKYFSPEIRTVEQ 274 + ++ + + + K S Sbjct: 230 NMGWAKIEELPTLFAQALTTAKKGDIVGPIRSGVGFHILKVNDLRGESKNVSVTEVHARH 289 Query: 275 LVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGS---FSKEYIP 321 ++ + + ++ ++ GK F A++ + G ++ + Sbjct: 290 ILLKPSPIMTDDQARAKLEQIAADIRSGKTTFAAAAKQFSDDPGSANQGGDLGWTSPEVF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KKG+ + +H SFG+ + + + + R+ Sbjct: 350 DPAFRDALLRL-KKGETSQPVHSSFGWHLIQLLDTRQVDKTD----AAQKERAYRMLFNR 404 Query: 382 EKVKEDYKRLEEFLALG 398 + +E ++E A Sbjct: 405 KFAEEAQTWMQEQRAGA 421 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 21/241 (8%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YRA K + +E +++ I E+ ++ + + ++ P Sbjct: 124 NYNTYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAQQVGAQNTQGTEMNISHILLPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVS 324 +K A + LK G F +LA ++L ++G E +P + Sbjct: 184 PENPTQQQVDDQEKLAKQLITELKGGADFGKLAVTYSADSQALKGGNMGWAKIEELP--T 241 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASE 382 L + AKKGD I G+ I V++++ S VS EV I + + Sbjct: 242 LFAQALTTAKKGDIVGPIRSGVGFHILKVNDLRGESKNVSVTEVHARHILLKPSPIMTDD 301 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + + +++ + G + + K S D + G P L R Sbjct: 302 QARAKLEQIAADIRSGKT--TFAAAAKQFSDDPGSANQGGDLGWTSPEVFDPAFRDALLR 359 Query: 443 V 443 + Sbjct: 360 L 360 >gi|332994413|gb|AEF04468.1| survival protein surA [Alteromonas sp. SN2] Length = 426 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 52/397 (13%), Positives = 124/397 (31%), Gaps = 67/397 (16%) Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 ++ + LV + F S V V V + V S + ++ ++ Sbjct: 3 FIIRALLVSAVLSF-----SSYAQEVMLDRVAVIVDQGVVLQSEVD-ALMNDVKRNAEAN 56 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + S+RA L + ++ L++ + Q + +G++ ++ IA Sbjct: 57 GQDLPSDRA----LRTQAIERLITKSLQLQMAQRMGIQISDPQLEQTIANIAANQNTT-- 110 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMRPSNLLLDQAKRFYFEN- 189 D +L EGI ++Y + + + + ++ + + Sbjct: 111 --VDELRRQLRLEGIAYEDYREDIREEIVMGEVRRANVRRRVYITDQERETLIELMEQQG 168 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE--------------------KYKDNYRAPEY 229 + L + + +DPS+ + E A E Sbjct: 169 AEQEEYRLGHILIGFPSDPSDEQIDAARERADKVLSLLNSGSDFAKIAIASSSGNEALEG 228 Query: 230 KRISYILFDVHEKEKKIEI---SNDELQ------------AEYEKNKEKYFSPEIRTVEQ 274 + ++ + I + DEL + + + E Sbjct: 229 GDMGWLNINAMPTLFAEAIQGKAKDELVGPIRSGAGFHILKVLDTRGIEKVTIEEVNSRH 288 Query: 275 LVFP-----NQKEADEAF----QSLKKGK-KFIQLAEE----QGKSLSDISLGSFSKEYI 320 ++ ++ +A L+ G+ +F LA+E G +L LG Sbjct: 289 ILVKPSIILSEDKAKAMLVKFRAQLEAGEVEFEDLAKEHSEDPGSALKGGELGWSDPNNY 348 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + D++ L+ G+++ + G+ + + + + Sbjct: 349 V-PAFKDALAQLS-AGEYSDPVRSVHGWHLIQLIDRR 383 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 86/248 (34%), Gaps = 32/248 (12%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277 ++YR + I +++ I++ E + E +++ E + ++ Sbjct: 126 EDYREDIREEIVMGEVRRANVRRRVYITDQERETLIELMEQQGAEQEEYRLGHILIGFPS 185 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLA 326 ++ AD+ L G F ++A +L +G + +P A Sbjct: 186 DPSDEQIDAARERADKVLSLLNSGSDFAKIAIASSSGNEALEGGDMGWLNINAMP-TLFA 244 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-------VKKDIANQMRITK 379 ++I AK + I G+ I V + + V+ +E VK I + K Sbjct: 245 EAIQGKAKD-ELVGPIRSGAGFHILKVLDTRGIEKVTIEEVNSRHILVKPSII--LSEDK 301 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A + + +LE A +++++ S D G+ +P + Sbjct: 302 AKAMLVKFRAQLE---AGEVEFEDLAKEH---SEDPGSALKGGELGWSDPNNYVPAFKDA 355 Query: 440 LFRVFGKD 447 L ++ + Sbjct: 356 LAQLSAGE 363 >gi|330719900|gb|EGG98375.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [gamma proteobacterium IMCC2047] Length = 429 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 62/434 (14%), Positives = 132/434 (30%), Gaps = 79/434 (18%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 ML +RK + + P ++ V V + S + Sbjct: 1 MLNSLRKY----FTTLLAALCLAPSML-----YAAIQPLDRIAVIVNDDIIMQSQVQQAI 51 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + + Q+ N + L ++++++L+ + Q E G+ D + I+ Sbjct: 52 DSAIRNLQQR-----NQQMPPKKVLIQQVVESLIMESLQLQIAERGGIRVDDTSLNEAIS 106 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLL 179 R N + + F + EG + + + L T VG ++ ++ + Sbjct: 107 RIAA----QNNMTLEQFQQAIIAEGSDYAATREQIRRELLTTRARQGSVGPRIQITDQEI 162 Query: 180 D------QAKRFYFENRSVDYIVLNNRHVPAIAD-----------------PSNAVLTQW 216 D + K + +I++ + A A LT+ Sbjct: 163 DNFLDSAEGKALLASKFHIAHILVKPDNNTQPARQKAKKQAQALYQQLQSGADFAALTKQ 222 Query: 217 FEKYK-----------DNYRAPEYKRISYILFDVHEKEKKIEISND-ELQAEYEKNKEKY 264 + D + P + + + E + I SN L EK Sbjct: 223 YSDGPNAEQGGSMGWRDESQLPSLFKNTVKALNDGEVSEPIASSNGFHLVKLLEKRGGTS 282 Query: 265 FSPEIRTVEQLVFP-----NQKEADE----AFQSLKKGKKFIQLA----EEQGKSLSDIS 311 + V ++ ++++A+E F ++ G+ F +LA + G Sbjct: 283 IIQDQTQVRHILIQPNEIRSERQAEEMIYDLFTRIQSGEDFAELARLYSADPGSRAKGGE 342 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG + + S + G + +G+ I V + ++DI Sbjct: 343 LGWITPAGLV-PSFVKVMKETPVDG-ISAPFKSRYGWHILEVQGRR----------QQDI 390 Query: 372 ANQMRITKASEKVK 385 +A E + Sbjct: 391 GADAARQQAREVIY 404 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 98/291 (33%), Gaps = 41/291 (14%) Query: 142 AREGINEKE-YIDHYTKMLSRTDVVGMFV--GGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + + K+ I + L + GG+R + L++A + + L Sbjct: 61 RNQQMPPKKVLIQQVVESLIMESLQLQIAERGGIRVDDTSLNEAISRIAAQ---NNMTLE 117 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 IA+ S+ + ++ R + + +I+I++ E+ + Sbjct: 118 QFQQAIIAEGSD------YAATREQIR----RELLTTRARQGSVGPRIQITDQEIDNFLD 167 Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-----------GKKFIQLAEEQGK-- 305 + K + ++ A Q KK G F L ++ Sbjct: 168 SAEGKALLASKFHIAHILVKPDNNTQPARQKAKKQAQALYQQLQSGADFAALTKQYSDGP 227 Query: 306 -SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF--TV 362 + S+G + +P + +++ +L G+ + I S G+ + + + Sbjct: 228 NAEQGGSMGWRDESQLPSL-FKNTVKAL-NDGEVSEPIASSNGFHLVKLLEKRGGTSIIQ 285 Query: 363 SFQEVKKDIAN--QMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 +V+ + ++R + A E + + + R++ G E++R Sbjct: 286 DQTQVRHILIQPNEIRSERQAEEMIYDLFTRIQ----SGEDFAELARLYSA 332 >gi|332970909|gb|EGK09885.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)] Length = 487 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 51/418 (12%), Positives = 125/418 (29%), Gaps = 69/418 (16%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 S + + V + S ++ I + +R L +L+ L+ Sbjct: 76 STNGIIAIVNDTPILKSELASAVATAQARIQASGQPAPSPQR-----LQNDVLNGLILRE 130 Query: 98 TLDQFIEDIGLEADHGRVWGEI---------ARSPLFHGKDNKFSHDVFVSRLAREGINE 148 ++ G+ D V + + + + + I E Sbjct: 131 LQLDMVKRAGIRPDENAVNQSLGRLAQSQGLKSLTELQQALDAKQPGRYAAV-RAQVIEE 189 Query: 149 KEYIDHYTKMLSRTDVV-----GMFVGGMRPSNLLLDQAKRFY--------------FEN 189 + ++R + F+ L + + + E Sbjct: 190 ESLKALQQSQVARRVRITDHDVDAFLASPEAQKLQSTEYRTIHIRVPFSDDYNRITDSEK 249 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY----------------KRIS 233 ++ I + + +D ++ VL+Q NY AP + Sbjct: 250 KAAMQIAQQAQELLKSSDDADMVLSQLSAGTAKNYIAPVQGGDMGFHPAAGLPIDIAKQI 309 Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEAD 284 L E +I ++ +K+ V ++ +++ + Sbjct: 310 TPLEIGQVTEPQITPEGIDIVKLVDKHTNDNMIIPQWKVRHILVKTDERNSDALAEQKIN 369 Query: 285 EAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 + ++ L++ F LA + G + L ++ + + + +GD++ Sbjct: 370 DLYEQLRRDADFASLAATYSDDPGSAGRGGDLDWVAEGQMV-PEFEE-MMKRTPEGDYST 427 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 FG+ I V ++ VK+++A + + + + +ED+ L+E A Sbjct: 428 PFKSQFGWHILKVEGVRQKDVS--DTVKRNLAREALYQRLAPQAQEDW--LQELRANA 481 >gi|300715281|ref|YP_003740084.1| hypothetical protein EbC_06930 [Erwinia billingiae Eb661] gi|299061117|emb|CAX58224.1| uncharacterized protein [Erwinia billingiae Eb661] Length = 431 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 50/396 (12%), Positives = 127/396 (32%), Gaps = 62/396 (15%) Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 Q + +Q+ G + ++ L +I++ LV L Q + G++ ++ G I Sbjct: 47 QSVKSQAQQAGQQLPDDK----TLRHQIVERLVMDNILLQMAKQSGIQVTDAQLDGAIQN 102 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180 NK + D SRLA +G+N Y + + ++ ++V + +D Sbjct: 103 IAA----QNKMTPDQLRSRLAYDGMNYGTYREQIRREMTISEVRNNEVRRRVTILPQEVD 158 Query: 181 QAKRFYFEN------RSVDYIVLNNRHVPAIADPSNAV------------------LTQW 216 + ++ +I+L P + L Sbjct: 159 SLSKQVASQNNASTELNLSHILLPLPENPTQQQVDDQETLAKQLVSQSKSGADFGKLAIT 218 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL-------------QAEYEKNKEK 263 + + + + ++ + + + + Sbjct: 219 YSADPQALKGGNMGWGKIQELPSLFAQALVTAKKGDIIGPIRSGVGFHILKVNDVRGESQ 278 Query: 264 YFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313 S ++ +++ ++ + GK F + A++ + + G Sbjct: 279 NVSVTEVHARHILLKPSPVMTDEQARQKLEQVVADINSGKTTFAEEAKQLSQDPGSANQG 338 Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +S + D + D++ L KKG + +H SFG+ + + + + + K+ Sbjct: 339 GDLGWSSPEMYDPAFRDALMKL-KKGQLSAPVHSSFGWHLIQLLDTR-QVDKTDAAQKER 396 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + K +E+ + + + A +D ++ Sbjct: 397 AYRLLFNRKFAEEAQTWMQE-QRAAAYVKILDANAQ 431 >gi|295688302|ref|YP_003591995.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis ATCC 21756] gi|295430205|gb|ADG09377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis ATCC 21756] Length = 329 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 57/145 (39%), Gaps = 6/145 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ D ++ Y + ++ E Q++ +Q EA+ + L G F LA E+ Sbjct: 139 AVTEDAIRKLYAEQQKLSKRSEEIRARQIIVGSQAEAESVKKLLATGASFDALAMERSTD 198 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG F+ + +P+ A+KG G+V+ V + + + Sbjct: 199 QATRFNGGDLGYFTLDVMPEPYG--VALKDAQKGALVGPFAAEGGWVLVRVEDKRVEEPI 256 Query: 363 SFQEVKKDIANQMRITKASEKVKED 387 + + + I + + + +++ Sbjct: 257 TLEAARPQIVRFLTYDQVRDILEKL 281 Score = 37.3 bits (85), Expect = 8.6, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 49/151 (32%), Gaps = 11/151 (7%) Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKV---KEDYKRLEEFLALGTSMDEISRREKI 410 + ++ ++ + +A + + + + + +++ LA G S D ++ Sbjct: 138 KAVTEDAIRKLYAEQQKLSKRSEEIRARQIIVGSQAEAESVKKLLATGASFDALAMERS- 196 Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 F G D+ + +P + KD +G ++ V++++ Sbjct: 197 ---TDQATRFNGGDLGYFTLDVMPEPYGVAL----KDAQKGALVGPFAAEGGWVLVRVED 249 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 LE + + + + + Sbjct: 250 KRVEEPITLEAARPQIVRFLTYDQVRDILEK 280 >gi|189502175|ref|YP_001957892.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus 5a2] gi|189497616|gb|ACE06163.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus 5a2] Length = 445 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 50/429 (11%), Positives = 121/429 (28%), Gaps = 80/429 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + SV Q + S ++ + A ++L+N+V L Sbjct: 32 DKVIASVDDQPILQSELDAEYQLYQAQ-----------DNASKKPTKCQVLENMVINKIL 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +G V + + L G E + K Sbjct: 81 LANAAKKEINVKNGEVDRYLKY--------------RMQAILEEVG-TEARLEQYIRK-- 123 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 P ++ ++ ++ E +++ + + S + +F++ Sbjct: 124 --------------PIHVFKEELRKSIREQLTIEKMR---DSIIGNITISPIEVQSYFDQ 166 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + V + + S +E + +LV N Sbjct: 167 LPAS-------DVPFFPATVEAYQLVLFPSIEEQEK------------------KLVIEN 201 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKG 336 ++ G+ F LA + + + S G F + D S + +L G Sbjct: 202 LA---SLKTRIQAGESFAVLARQYSEDIGSASNGGELGFWRIGELDSSYEKAALAL-NPG 257 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + + FG+ I + + + + K +A ++ I +A E++ + E Sbjct: 258 EISEPVETRFGFHIIQLIEKQKDKYNTRHILLKPLAAKVSIEEAIERINNIRTSILEK-- 315 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 + ++ + + +G ++ + F + V Sbjct: 316 -QVTFEKAAMSYSQDIATAHQGGLLTGNSEGVQMPVDKLPSDVFFILDKMAPGDVSRPIV 374 Query: 457 ALPDGSYMW 465 DG Sbjct: 375 FTIDGKQAA 383 >gi|149199507|ref|ZP_01876542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera araneosa HTCC2155] gi|149137442|gb|EDM25860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera araneosa HTCC2155] Length = 308 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 47/353 (13%), Positives = 99/353 (28%), Gaps = 78/353 (22%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT-L 99 S + V + +E + Q R L ++ LD L+ L Sbjct: 23 SIMAKVNGHIITSYDIQELSYREEMRLRQIFNGPELPSRIVD--LRRRALDILIEEQLIL 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 D F + + + I +S + D F L ++ + +EY + + + Sbjct: 81 DHFNSNDAYQVPSSLLEERIEKSIA--RRFGS-DRDKFYDMLHQKDMTVEEYREEIERGI 137 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + F + + + +F + Sbjct: 138 ILELMRMEF---------------------------------IRKKIVVTPHDIALYFAE 164 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K + P I I+ +++Y++ K Sbjct: 165 NKAEFATPSQMHIKLIILSKD-------------KSKYDERVTK---------------- 195 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 Q LK GK F +L Q S + LG I L K G++ Sbjct: 196 ------LKQELKDGKSFDELM-PQSDSQFNGDLGFLKMTDIRPDFLE--ALKDKKAGEYI 246 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + + +S ++ S +++ I +++ + + +E L+ Sbjct: 247 TIEETTQM-LFVQLSEVRKSAVPPLEDISDQIKSKLSSDQEKQYREEFIGDLK 298 >gi|285808214|gb|ADC35748.1| hypothetical protein [uncultured bacterium 293] Length = 250 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 6/155 (3%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 R++ E ++++S E+ + + PE T+ Q++ P EA + + L Sbjct: 68 RVAVEQLLASEMAARVKVSETEIADYARDHTAELGRPEEVTLRQILVPTANEARDVQRRL 127 Query: 291 KK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +K K F LA+ ++ +GSFS +P L + F+L K G+ + ++ Sbjct: 128 QKDPKSFELLAQSVSRGPEAGKGGLMGSFSAGQLP-PELEAAAFAL-KPGETSGIVVTPL 185 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 G + + + S +E + + +R K+S Sbjct: 186 GQHVLRLEARTAAHPFSPEETRDRVRALLREKKSS 220 >gi|300939470|ref|ZP_07154132.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1] gi|300455691|gb|EFK19184.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1] Length = 428 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232 ++ + +N + + L++ +P +P++ + + + + + + Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARTIVDQARNGA 210 Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268 + + + ++ EL + + + Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270 Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305 ++ ++A ++ +K GK F A+E + Sbjct: 271 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330 Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + G ++ I D + D++ L KG + +H SFG+ + + + + + Sbjct: 331 DPGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 + K + K SE+ + Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARTIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|167892891|ref|ZP_02480293.1| putative survival protein SurA [Burkholderia pseudomallei 7894] gi|254187685|ref|ZP_04894197.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur 52237] gi|157935365|gb|EDO91035.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur 52237] Length = 448 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMQLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAPQADIDVA 209 Query: 212 VLTQ---------------WFEKYKDN-----------YRAPEYKRISYILFDVHEKEKK 245 K + +++P + + + Sbjct: 210 QKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPASLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 330 RRQIESGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|283835117|ref|ZP_06354858.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC 29220] gi|291069416|gb|EFE07525.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC 29220] Length = 428 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 115/369 (31%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ L Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFY-FENR 190 + D SRLA++G+N Y K ++ ++V + +D + +N Sbjct: 110 TLDQMRSRLAQDGLNYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQND 169 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQ-----------------------WFEKYKDNY--- 224 + + L++ +P +P++ + + + Sbjct: 170 ASTELNLSHILIPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----EQ 274 R E I +K I + K + + +V Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARH 289 Query: 275 LVFP-----NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++A + + F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDQQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG + +H SFG+ + + + + + K + K S Sbjct: 350 DPAFRDALTKL-NKGQMSAPVHSSFGWHLIELLDTRK-VDKTDAAQKDRAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 Score = 57.3 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 YR+ K ++ +E +++ I E+ A ++ + + + ++ P Sbjct: 124 NYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA + G I + + Sbjct: 184 PENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S ++S EV I + ++ Sbjct: 244 AQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTDQQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L ++ Sbjct: 304 RLKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKL 360 >gi|320668802|gb|EFX35597.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. LSU-61] Length = 428 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232 ++ + +N + + L++ +P +P++ + + + + + + Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARAIVDQARNGA 210 Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268 + + + ++ EL + + + Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270 Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305 ++ ++A ++ +K GK F A+E + Sbjct: 271 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330 Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + G ++ I D + D++ L KG + +H SFG+ + + + + + Sbjct: 331 DPGSANQGGDLGWATPDIFDPAFRDALTHL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 + K + K SE+ + Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L + Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTHL 360 >gi|294139570|ref|YP_003555548.1| survival protein surA [Shewanella violacea DSS12] gi|293326039|dbj|BAJ00770.1| survival protein surA [Shewanella violacea DSS12] Length = 434 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 103/337 (30%), Gaps = 61/337 (18%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + S++A L ++++ L+ Q + IGL ++ I KD K Sbjct: 59 GQSLPSDQA----LRTQVIERLIVTRLQMQMADRIGLHIGDLQLDQTIGNI----AKDQK 110 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN- 189 + D ++ EG++ Y + + ++ ++ ++ S ++ E Sbjct: 111 LTVDQMKHKIGGEGMSWSHYREQLREEMTLGEIQRIQVQRRIQVSPQEINNLVNMIEEQG 170 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE-KYK--------DNYRAP-----------EY 229 + + + DP++ L + K ++R E Sbjct: 171 LKQTEFQIGHILIEIPNDPTSEQLEKASNRANKVLERVKDGGDFRRTAIAASAGPKALEG 230 Query: 230 KRISYILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQ 274 Y+ + +S+ + + + + + Sbjct: 231 GIWDYMNINEMPTLFAEVLSDAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVKEVRSRH 290 Query: 275 LVFP-----NQKEADEAFQ----SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYI 320 ++ +++ A L+ G F LA E+ G + LG + + Sbjct: 291 ILIKPSPILSEERAKAMLDKFVKQLRAGDADFAALAHKYSEDPGSAAKGGELGW-ADPTV 349 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + ++ L D + + G+ I + + Sbjct: 350 YVPAFSQTLKGL-NVNDISEPFRSTHGWHIVQLEERR 385 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 85/243 (34%), Gaps = 22/243 (9%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +YR + ++ + +++I++S E+ +E+ + ++ Sbjct: 128 SHYREQLREEMTLGEIQRIQVQRRIQVSPQEINNLVNMIEEQGLKQTEFQIGHILIEIPN 187 Query: 282 E------------ADEAFQSLKKGKKF--IQLAEEQG-KSLSDISLGSFSKEYIPDVSLA 326 + A++ + +K G F +A G K+L + +P +L Sbjct: 188 DPTSEQLEKASNRANKVLERVKDGGDFRRTAIAASAGPKALEGGIWDYMNINEMP--TLF 245 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVK 385 + S AKKGD I G+ I V + + T +EV+ I + + E+ K Sbjct: 246 AEVLSDAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVKEVRSRHILIKPSPILSEERAK 305 Query: 386 EDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++ A ++ + S D G+ +P Q L + Sbjct: 306 AMLDKFVKQLRAGDADFAALAHKY---SEDPGSAAKGGELGWADPTVYVPAFSQTLKGLN 362 Query: 445 GKD 447 D Sbjct: 363 VND 365 >gi|320172859|gb|EFW48091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae CDC 74-1112] Length = 428 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNHEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + HE ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNHEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|332283295|ref|YP_004415206.1| survival protein [Pusillimonas sp. T7-7] gi|330427248|gb|AEC18582.1| survival protein [Pusillimonas sp. T7-7] Length = 489 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 50/427 (11%), Positives = 114/427 (26%), Gaps = 83/427 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V +Q + + + ++ N L K++L ++ Sbjct: 46 DGIAAVVNKQVITLQQVNKEARLAQEQLQRQ-----NIPVPDYAVLQKQVLQRMIMEELE 100 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +G++ +V + + N+ + + + + G +Y+ + + Sbjct: 101 RQEAERLGIKVSDAQVSQAVQTI----AERNRITPKQLRAEIEKTGGKWDDYLQGLRQEV 156 Query: 160 SRTDVVGMFVGGMRP-SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + V S+ +D + ++ P +P Sbjct: 157 RTDLLRQRTVDSTIVISDAEVDAFLKSQGQS--------APASAPTAPEP---------- 198 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 P+ ++ IL V E ++ L+ Sbjct: 199 --AARPAGPQILGLAQILVAVPEGASSAQVQALRLK------------------------ 232 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGD 337 A++ + ++ G F +A + G + L + G Sbjct: 233 ----AEDLLKQVQGGADFGGVAAASSDGPQALDGGELGVRPVEGWPDLFIKATQNLQAGQ 288 Query: 338 FTPVIHGSFGYVIAHVSNI--------KPSFTVSFQEV---------------KKDIANQ 374 + ++ G+ I V PS + + + I + Sbjct: 289 VSGIVQSGNGFHILKVLTRGQPQSQAGSPSAPPTTAQQPAPMQQGPMMVTQTHARHILIK 348 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + EK +L + L G S +++++R P G G+ V A Sbjct: 349 TTQVMSDEKASNRLAQLRQRLENGESFEDLAKRYSD-DATAPQGGDLGWLTPGETVPAFQ 407 Query: 435 YKEQLLF 441 L Sbjct: 408 RAMDALQ 414 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 15/151 (9%) Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFS 316 ++ ++A + Q L+ G+ F LA+ LG + Sbjct: 339 QTHARHILIKTTQVMSDEKASNRLAQLRQRLENGESFEDLAKRYSDDATAPQGGDLGWLT 398 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + ++ +L + + I FG+ + V + + + + + Sbjct: 399 PGETV-PAFQRAMDAL-QPNQISQPIQSQFGWHLIQVLERRTKNMEN-EFRRMQARQLLF 455 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 + ++ +L + +D S R Sbjct: 456 QRRVEPAFEDWLSQLRGEAYIDNRLDPASNR 486 >gi|307823841|ref|ZP_07654069.1| nitrogen fixation protein NifM [Methylobacter tundripaludum SV96] gi|307735135|gb|EFO05984.1| nitrogen fixation protein NifM [Methylobacter tundripaludum SV96] Length = 292 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 83/264 (31%), Gaps = 45/264 (17%) Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 L+ + G + F E+R ++ A ++ L Sbjct: 16 LRAALALFKKSPNELAGAELQQAQIQALNEFRIESRVLNT------PEAAAVIITDQELQ 69 Query: 215 QWFEKYKDNYRAP-------EYKRISYILFDVH-------------EKEKKIEISNDELQ 254 +++ +D Y E R+S IS ++ Sbjct: 70 HAYQEIRDRYDDEDAFFSDLEKNRLSKASLQAALHRQCKVNTVLESIASHAPAISEIDIG 129 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQSL-KKGKKFIQLA- 300 Y + E++ PE R V + + A E + L KK KF LA Sbjct: 130 IYYHLHAEQFNCPERREVSHIFISINPDYAENTPEAALSRAQELAEKLHKKPHKFADLAL 189 Query: 301 --EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 E +L LG + + L +F+L K G+ + V+ G + +I+ Sbjct: 190 RHSECPTALQGGVLGIVPRGTLY-PELDAVLFNL-KPGEVSDVVKSEIGLHLLLCKSIQK 247 Query: 359 SFTVSFQEVKKDIANQMRITKASE 382 + T+S + I Q+ +A Sbjct: 248 AETLSLAKATPKIR-QLMKERARR 270 >gi|331650947|ref|ZP_08351975.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli M718] gi|331051401|gb|EGI23450.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli M718] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|329296585|ref|ZP_08253921.1| peptidyl-prolyl cis-trans isomerase SurA [Plautia stali symbiont] Length = 431 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 116/388 (29%), Gaps = 64/388 (16%) Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 + + +Q+ G + ++ L + L+ V A + Q E GL+ ++ I Sbjct: 47 RTVKSQAQQAGQQLPDDK----TLRHQFLERQVMDAIILQMGEKAGLQVSDQQLDQAIQS 102 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLD 180 N+ S D SRLA +G+N +Y K + ++V + +D Sbjct: 103 IAA----QNRMSVDQLRSRLAYDGMNYNDYRAQIRKEMLISEVRNNEVRRRVTILPQEVD 158 Query: 181 QAKRFYFEN------RSVDYIVLNNRHVPAIADPSNAV------------------LTQW 216 + ++ I+L P + L Sbjct: 159 TLAKQIGSQNTQGTELNISQILLPLPENPTQQQVDDQEALARQLVGELKGGADFGKLAVT 218 Query: 217 FEKYKDNYR-----------APEYKRISYILFDVHEKEKKIE--ISNDELQAEYEKNKEK 263 + + P + + I + L+ + + K Sbjct: 219 YSADPQALKGGNMGWGKIEELPTLFSQTLSSAKKGDIVGPIRSGVGFHILKVNDLRGESK 278 Query: 264 YFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG 313 S ++ +++ ++ +K GK F A + + G Sbjct: 279 NISVTEVLARHILLKPSPILTDDQARQKIEQITADIKSGKTTFAAAATQLSDDPGSANQG 338 Query: 314 ---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++ I D + D++ L +KG + +H SFG+ + + + + Sbjct: 339 GDLDWASPEIDDPAFRDALLKL-QKGQVSAPVHSSFGWHLIQLLDTRQVDKTD----AAQ 393 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALG 398 R+ + +E ++E A Sbjct: 394 KERAYRLLFNRKFAEEAQTWMQEQRASA 421 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 100/310 (32%), Gaps = 36/310 (11%) Query: 155 YTKMLSRTDVVGMFV------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 V+ + G++ S+ LDQA + + L +R Sbjct: 66 LRHQFLERQVMDAIILQMGEKAGLQVSDQQLDQAIQSIAAQNRMSVDQLRSRL------- 118 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + ++YRA K + +E +++ I E+ ++ + Sbjct: 119 ------AYDGMNYNDYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAKQIGSQNTQGT 172 Query: 269 IRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 + Q++ P + A + LK G F +LA + G+ Sbjct: 173 ELNISQILLPLPENPTQQQVDDQEALARQLVGELKGGADFGKLAVTYSADPQALKGGNMG 232 Query: 317 KEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IAN 373 I + +L S AKKGD I G+ I V++++ S +S EV I Sbjct: 233 WGKIEELPTLFSQTLSSAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVLARHILL 292 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + ++ ++ +++ + G + + +S D + G Sbjct: 293 KPSPILTDDQARQKIEQITADIKSGKT--TFAAAATQLSDDPGSANQGGDLDWASPEIDD 350 Query: 434 PYKEQLLFRV 443 P L ++ Sbjct: 351 PAFRDALLKL 360 >gi|261327012|emb|CBH09987.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative [Trypanosoma brucei gambiense DAL972] Length = 122 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326 V ++ A EA + +K G+ F +A + + S LG ++ + + Sbjct: 33 KVKVRHILCEKLSRALEALEKIKAGESFANVARDYSEDKARSGGDLGWVTRGAMVG-EFS 91 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + F+L K G + FGY I V + + Sbjct: 92 EKAFALPKGGMTQEPVKTKFGYHIIFVEDKQ 122 >gi|238918641|ref|YP_002932155.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella ictaluri 93-146] gi|238868209|gb|ACR67920.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 434 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 93/323 (28%), Gaps = 71/323 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S K + + +Q+ G + L +IL+ L+ Sbjct: 26 DKVVAIVDNGVVLESDVDGMMKS-VKLNAQQAGQQLP----DDATLRHQILERLIMDNVQ 80 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +GLE + I + N S SRLA +G++ K Y + Sbjct: 81 LQMAKRMGLEISDSELDNAINGI----AQQNHISMQQLRSRLAADGLDYKTY----RDQI 132 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++ V + + ++ Sbjct: 133 RKEMLISEVRN-----------------------------NEVRSRVTILPQEVDALAKQ 163 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +S+IL + E + ++S Sbjct: 164 IGSQNSGETAVNLSHILIPLPENPTQQQVSEA---------------------------- 195 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338 QK+A+ Q L +G F +LA + G + + +L AKKGD Sbjct: 196 QKQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDI 255 Query: 339 TPVIHGSFGYVIAHVSNIKPSFT 361 I G+ I V++++ Sbjct: 256 VGPIRSGVGFHILRVNDLRGDQA 278 >gi|171915197|ref|ZP_02930667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium spinosum DSM 4136] Length = 351 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 92/254 (36%), Gaps = 29/254 (11%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 + + G D + F + D + R + + A L W E+ Sbjct: 107 LWALTQPGNEHPTAAEDALQTFIKQFEIPD----SWRQRSKLQQMNEAQLQAWVEE---- 158 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------ 277 E ++ + FD + ++ DE++A + + PE + + Sbjct: 159 ----ETRQR--LAFDAEMSRRMARVTPDEIKAWLRDHATEVQIPERLSASHVFLSGHDKD 212 Query: 278 -PNQKEADEAFQS--LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIF 330 P++ A+ + LA E + SLG FS++ +P + A+ F Sbjct: 213 KPDRTAEITAYHRRIIAGETTLSALAGEVSEDGRSNKLGGSLGWFSRDRVP-ANFAEKAF 271 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + K G+ + G+ I V +P+ + +E + ++A + + S + + + Sbjct: 272 A-QKVGELSAPFRTELGWHIVLVHAKRPARPATLEEAQAEVAAHLTSVRRSAESAKLKEE 330 Query: 391 LEEFLALGTSMDEI 404 + + + + +D + Sbjct: 331 ILKLIPVEKHLDRL 344 >gi|163750061|ref|ZP_02157304.1| survival protein surA [Shewanella benthica KT99] gi|161330118|gb|EDQ01100.1| survival protein surA [Shewanella benthica KT99] Length = 434 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 38/336 (11%), Positives = 105/336 (31%), Gaps = 59/336 (17%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + S++A L ++++ L+ Q + IGL ++ I K+ K Sbjct: 59 GQSLPSDQA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNI----AKEQK 110 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN- 189 + + +++ EG+N +Y + + ++ ++ ++ S + E Sbjct: 111 LTVEQMRQKISNEGMNWGQYREQLREEITLGEIQRIQVQRRIQVSPQEISNLVNMIEEQG 170 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYR-----------APEY 229 + + + +P++ L + K ++R A E Sbjct: 171 LKQIEFQIGHILIEIPNNPTSEQLEKASNRANTVLDRVKDSGDFRRMAIAASAGPKALEG 230 Query: 230 KRISYILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQ 274 Y+ + +SN + + + + + Sbjct: 231 GIWDYMNINEMPTLFAEVLSNAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRH 290 Query: 275 LVFP-----NQKEADEAFQ----SLKKG-KKFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ +++ A ++ G F LA + + + G ++ + Sbjct: 291 ILVKPSPILSEERAKAMLDKFVKQIRAGDADFAALARQYSEDPGSGAKGGELGWADPSVY 350 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + ++ L K + + S G+ I + + Sbjct: 351 VPAFSQALNEL-KVNEISEPFRSSHGWHIVQLEERR 385 Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 18/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-- 277 YR + I+ + +++I++S E+ +E+ + ++ Sbjct: 126 NWGQYREQLREEITLGEIQRIQVQRRIQVSPQEISNLVNMIEEQGLKQIEFQIGHILIEI 185 Query: 278 ----------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 A+ +K F ++A + G + I + +L Sbjct: 186 PNNPTSEQLEKASNRANTVLDRVKDSGDFRRMAIAASAGPKALEGGIWDYMNINEMPTLF 245 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVK 385 + S AKKGD I G+ I V + + T EV+ I + + E+ K Sbjct: 246 AEVLSNAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRHILVKPSPILSEERAK 305 Query: 386 EDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ A ++R+ S D G+ +P Q L + Sbjct: 306 AMLDKFVKQIRAGDADFAALARQY---SEDPGSGAKGGELGWADPSVYVPAFSQALNEL 361 >gi|312597019|pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon Cenarcheaum Symbiosum (Cspin) Length = 97 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPD 322 + ++ Q EA + LK G+KF +LA+E G + D SLG F + + Sbjct: 7 ADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVK 66 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 D+ F L + G+ + + FGY + Sbjct: 67 P-FEDAAFRL-QVGEVSEPVKSEFGYHVIK 94 >gi|167644889|ref|YP_001682552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31] gi|167347319|gb|ABZ70054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31] Length = 330 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 58/160 (36%), Gaps = 6/160 (3%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ + ++ Y + ++ E Q++ +Q + + + L G F LA E+ Sbjct: 129 AVNENAIRGLYAEQQKLSKRSEEIRARQILVASQADGEAVKKLLAAGASFDALAMERSTD 188 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + LG F+ + +P A+KG G+ + V + + + Sbjct: 189 PATRFNGGDLGYFTVDVMPAAYA--VALKDAQKGALVGPFQTEGGWAVLRVEDKRLEEPI 246 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 + + + I + + + +++ + + G D Sbjct: 247 TLEAARPQIVRFLTYDQVRDLLEKLRGAAKVEMLTGKPQD 286 Score = 39.2 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 8/139 (5%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 ++R + + D + +++ LA G S D ++ P F G D+ V Sbjct: 150 EEIRARQILVASQADGEAVKKLLAAGASFDALAMERS----TDPATRFNGGDLGYFTVDV 205 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P + + K + T +G + +++++ LE + + Sbjct: 206 MPAAYAVALKDAQKGALVGPFQT----EGGWAVLRVEDKRLEEPITLEAARPQIVRFLTY 261 Query: 493 VKTAEEVSSKANQLVLEYS 511 + + + +E Sbjct: 262 DQVRDLLEKLRGAAKVEML 280 >gi|309806668|ref|ZP_07700664.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 03V1-b] gi|312870840|ref|ZP_07730945.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 3008A-a] gi|308166973|gb|EFO69156.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 03V1-b] gi|311093530|gb|EFQ51869.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 3008A-a] Length = 297 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%) Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + N PE + I L + I+ + + +++ + K V+ ++ Sbjct: 99 QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333 + A + + L KG F LA++ + + D ++ F L Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + FGY I + IK SFQ K +I ++ A ++ Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIIARIYQKMAQDQ 260 Score = 41.1 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%) Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533 KK WK V+ + K A +++ E K G +F+D+ K T+ Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188 Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590 I D+ + D F P++ Y + K + + G Q K + Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248 Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 I+ + Q M +D ++ SV+ + + +V + DN ++ L Sbjct: 249 IARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 +L F AL + S TV + K+ F N + Sbjct: 11 LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + + IL N++ TL Q G + +V + K F Sbjct: 47 VKKSPAGQAILANMIINRTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 L + G+ + Y + L + + +A + Y V +I++ Sbjct: 97 VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153 Query: 200 RHVPAIA 206 Sbjct: 154 EDTAKKV 160 >gi|170768498|ref|ZP_02902951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia albertii TW07627] gi|170122602|gb|EDS91533.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia albertii TW07627] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVEALAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E++A ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVEALAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|325279465|ref|YP_004252007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter splanchnicus DSM 20712] gi|324311274|gb|ADY31827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter splanchnicus DSM 20712] Length = 445 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 66/478 (13%), Positives = 139/478 (29%), Gaps = 92/478 (19%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V VG + + S N++ + Q+ +++S S +IL+ + L Sbjct: 28 VAIVGDEIILQSDIENAF------LQQQGQGIISS----SPDYKAEILEQQLVQKLLMAQ 77 Query: 103 IEDIGLEADHGRVWGEIARSPLFH--GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 + + V ++ F ++ + + G + +E D L Sbjct: 78 AQIDSIIVSDEEVENAVSSQIEFFISNIGSQERLEKYF------GKSIQEIKDDMRNPLK 131 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 + + + V+ I + + +F+K Sbjct: 132 EQLITEQ-------------------MQQKIVEKIRITPS-----------EVRSYFKKI 161 Query: 221 KDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + P+ + I+ ++S E + + + Sbjct: 162 PKDSLPDMPDRYELQQIVLKP-------DVSEAE-KERIREQLRSFRD------------ 201 Query: 279 NQKEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 Q LK K F LA E + LG SK+ + D + A++ FSL K Sbjct: 202 ---------QILKGEKTFNTLAVLYSEDASAPRGGELGYKSKKEL-DPAFAEAAFSL-KP 250 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + +I +G+ I + + + V+ I ++ + +++ Sbjct: 251 GKISKIIESEYGFHIIQLIDRQGEKI----NVRHIILQPKVSDTEKQEALNRLDTIRQYI 306 Query: 396 ALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 G + +E + + A P + R K P Sbjct: 307 TDGKMTFEEAAYYFSTDKKTRNNGGLFADPQTSEARIARPDIPGDMAREVNKMKPGEISQ 366 Query: 455 TVALPDGS---YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 Y V+IKE P L++ + + K K E++ + + Sbjct: 367 PFISHTNGQEEYKIVKIKEFYPRHKANLDDDWQNFELMLKREKQMEKLEKWIKEKQAD 424 >gi|188992953|ref|YP_001904963.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris str. B100] gi|167734713|emb|CAP52923.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris] Length = 463 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 45/406 (11%), Positives = 101/406 (24%), Gaps = 68/406 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRDNQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 E G+ + IA + N S D +LA +G+ ++ + Sbjct: 87 VGRAEGSGIRVSDEELNRAIASI----AQQNGTSVDGLRQKLAADGMGYADFRASVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213 + F + S +D + + L + V + + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVD--TALAQQATTGSQYHLAHILVGLPEGATAEQIATGQK 200 Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISNDE----- 252 +K + ++ A + + + D I + + Sbjct: 201 KVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVA 260 Query: 253 ----------LQAEYEKNKEKYFSPEIRT----VEQLVF---------PNQKEADEAFQS 289 L E + ++ + + D Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKVVTEYNARHILVRIGDNQTEAQAKAKIDTLRAR 320 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F A+E + + LG F + + L G + Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLT-DGAVSEPFRTQ 378 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + S + + I + K E+ + L Sbjct: 379 AGWHIVQRVGTRQTDV-SAENQRAQIRETIGRRKLEEEYNRYLQEL 423 >gi|296101217|ref|YP_003611363.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055676|gb|ADF60414.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 56/369 (15%), Positives = 111/369 (30%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ + Q + +G++ ++ IA K N Sbjct: 54 GQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDV---------------VGMFVGGM----- 172 + D SRLA +GI+ Y + K + ++V V + Sbjct: 110 TLDQMRSRLAYDGISYSTYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQND 169 Query: 173 -------------RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 P N DQA + R++ N +A +A Sbjct: 170 ASTELNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGG 229 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274 R E I +K + + K + + Sbjct: 230 QMGWGRIQELPSIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARH 289 Query: 275 LVFP---------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ + + + +K GK F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDDQARAKLQQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIY 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG + +H SFG+ + + + + + + K + K S Sbjct: 350 DPAFRDALMKL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLFNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAATWMQE 416 Score = 58.1 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 17/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 YR K + +E +++ I E+ A ++ + + + ++ P Sbjct: 126 STYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPE 185 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 + +A + + G F +LA + G I + S+ Sbjct: 186 NPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQ 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKVKE 386 S AKKGD I G+ I V++++ S +S EV I + ++ + Sbjct: 246 ALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARA 305 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 +++ + G + + K S D + G P L ++ Sbjct: 306 KLQQIAADIKSGKT--SFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKL 360 >gi|323160075|gb|EFZ46037.1| chaperone surA [Escherichia coli E128010] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPEIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPEIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|301019757|ref|ZP_07183903.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|331661424|ref|ZP_08362348.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA143] gi|300399094|gb|EFJ82632.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|331061339|gb|EGI33302.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA143] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAK-RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVSNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVSNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|164685824|ref|ZP_01945801.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii 'MSU Goat Q177'] gi|165918731|ref|ZP_02218817.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii RSA 334] gi|212219488|ref|YP_002306275.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154] gi|164601340|gb|EAX33680.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii 'MSU Goat Q177'] gi|165917559|gb|EDR36163.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella burnetii RSA 334] gi|212013750|gb|ACJ21130.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154] Length = 321 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S ++ Q+ K++LD L+ Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKQVLDQLIYQKLQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + ++ + + +AR + N S +L +EGI+ KE+ K L Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + + + + + ++ Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + EY I+ IL + + +I++ Sbjct: 176 HAGQIASTEY-HIATILIPLPASATQAQINHA---------------------------- 206 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +A + L+KG F + LG S + +P V ++ + K + T Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I G+ I + + + TVS + I + K + +++ +L Sbjct: 262 GPIQAPNGFHIVKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309 >gi|313887408|ref|ZP_07821098.1| conserved hypothetical protein [Porphyromonas asaccharolytica PR426713P-I] gi|332300810|ref|YP_004442731.1| peptidyl-prolyl cis-trans isomerase [Porphyromonas asaccharolytica DSM 20707] gi|312923176|gb|EFR33995.1| conserved hypothetical protein [Porphyromonas asaccharolytica PR426713P-I] gi|332177873|gb|AEE13563.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas asaccharolytica DSM 20707] Length = 720 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 41/289 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56 L+ IR + + I + V + F+ + D L S S + + +KV + + Sbjct: 4 LQKIRNRAGLLI--IVVGVALLAFI---IGDGLRSGSSLLQDNKMVALKIDGKKVKYDEY 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 Q ++ + + V + ++ L++ L+Q + IGL V Sbjct: 59 QQLLTQRTEPYERQRQGKLTDQ--DRVQISNQLAQELIADYVLEQEAKAIGLRVTPAEVS 116 Query: 117 GEIARS--------PLFHGKDNKF--SHDVFVSRLAREGIN-----EKEYIDHY------ 155 I F + + S ++ ++ E Sbjct: 117 ALIFGEGLPTSQWATQFFSQFGVDMGDPEQIRSIMSELDMDKIKSLPAEQQSMMISVRNQ 176 Query: 156 ----TKMLSRTDVVGMFVGGMRPSNLL--LDQAKRFYFENRSVDYIVLNNRHVP-AIADP 208 K + + + S + LD+ R+V + + +P Sbjct: 177 WLETEKQIRTQRLSEKVNALLTRSYAINSLDEKYTVGLGTRTVAVVRTPSTILPNDQVTV 236 Query: 209 SNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAE 256 ++ + +++ +K Y P E +++Y V E + E+ Sbjct: 237 TDQQVQAYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKAEVDTA 285 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 119/369 (32%), Gaps = 40/369 (10%) Query: 262 EKYFSPEIRTVEQLVFPNQK--EADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSF--- 315 ++ +PE V + +AD +++ G Q+ + G + Sbjct: 356 DRKQAPEEVKVNLIPLDTTNALKADSLIAAIQSGSATLAQIVATYSMDEQVKANGGYLIN 415 Query: 316 --SKEYIPDVSLADS-IFSLAKKGDFTPVIHG------SFGYVIAHVSNIKPSFTVSFQE 366 S +PD + ++ +F + I+ ++ + S Sbjct: 416 QDSYTGMPDSTFTEAELFGMGLDTLTKTPINQFVKMERPGATLLVRRTAPTASVN----- 470 Query: 367 VKKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 IA + I + E +++ ++ E S D++ + + + ++ + Sbjct: 471 -HYKIAQLTVPINFSEETFRKEQAKINEIFTSDKSFDKMMEDAQAAGLSVVRGEYV--NS 527 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV-QIKESIPARDRKLEEVLT 484 +A+IP +++ D + Y+ V Q+++ PA + E+V Sbjct: 528 SSAALASIPNSREIISWALRSKAGAVSDKLFRCGENDYLVVAQVEKKYPAGFQPFEQVAD 587 Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544 V+ + +++ A+ L + K + + +S+ T I+ + + Sbjct: 588 RVRDIVLMEQRGDQL---ASNLAGKQLK---SLNSYATEMQSSVDTLYNISYVTAPST-- 639 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFK-----VTNSKVGPVQEKDKFI-SYLTQMM 598 + + + + + P G VV + V S P Q M Sbjct: 640 PSALVGKAMTTAIGQL-SAPFRAGTEVVVLQPISENVDASVTKPSPAATAQKRRSYGQQM 698 Query: 599 NKDLLDSVI 607 + +I Sbjct: 699 AYRAMQELI 707 >gi|307825062|ref|ZP_07655283.1| SurA domain protein [Methylobacter tundripaludum SV96] gi|307733810|gb|EFO04666.1| SurA domain protein [Methylobacter tundripaludum SV96] Length = 434 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 61/424 (14%), Positives = 129/424 (30%), Gaps = 92/424 (21%) Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68 RT V + +LF FL+ + + + V + I Sbjct: 8 KRTIVVALLCNLLFGSFLV-------HAEVLDTIIAVVEEDVILERELQKEVAVIEQRI- 59 Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 Q+ + L K++L+ ++ Q E G+ + A + Sbjct: 60 QQSNAAIPPAYV----LRKQVLEKMIVDKLQRQLAEKAGITVSEEMLNSSAADI----AR 111 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 N + F + L +GI+ + ++D+ + + G +GG Sbjct: 112 RNNMDIEQFRAELEGQGISYQSFLDNMRNEIIINQLRGREIGG----------------- 154 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 ++ + + E + +IL V E EI Sbjct: 155 ----------------RIKVTDREVEHYMETQDKIGEESTQYHLGHILIAVKEGASSTEI 198 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGK 305 +A+ SL+ G+ F Q A + Sbjct: 199 Q----------------------------KAMSKAEGIVGSLRGGQDFSQTAISDSDDAN 230 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVS 363 +L LG + +P + I + K+GD + I G+ I + +K + ++ Sbjct: 231 ALKGGDLGWRTLSEVP-TLFVNEIRQM-KQGDVSEPIRSPSGFHIVKMLELKGTDNHMIT 288 Query: 364 FQEVKKDI--ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR---EKIVSIDLPLV 418 +V+ + N++ + + L+ +A G ++R +K ++ + Sbjct: 289 KTKVRHILIKTNELVDDA---EANKRLLALKARIADGDDFAALARAHSDDKGSALKGGSL 345 Query: 419 DFAG 422 D+ G Sbjct: 346 DWVG 349 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 16/139 (11%) Query: 271 TVEQLVFPNQKEADEAFQ---------SLKKGKKFIQLAE----EQGKSLSDISLGSFSK 317 V ++ + D+A + G F LA ++G +L SL Sbjct: 291 KVRHILIKTNELVDDAEANKRLLALKARIADGDDFAALARAHSDDKGSALKGGSLDWVGP 350 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + +++ L + + + FG+ I V + S + K + +R Sbjct: 351 GDLVKP-FEEAMVKLGIN-EVSDPVQTQFGWHIIQVLGRENKDDSS-EFKKNLVREAIRK 407 Query: 378 TKASEKVKEDYKRLEEFLA 396 K E+ + +RL + Sbjct: 408 RKIEEETELWVRRLRDEAF 426 >gi|259501419|ref|ZP_05744321.1| peptidylprolyl isomerase PrsA1 [Lactobacillus iners DSM 13335] gi|302190860|ref|ZP_07267114.1| peptidylprolyl isomerase [Lactobacillus iners AB-1] gi|309805385|ref|ZP_07699434.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 09V1-c] gi|312875036|ref|ZP_07735054.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 2053A-b] gi|315653171|ref|ZP_07906096.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus iners ATCC 55195] gi|325911618|ref|ZP_08174026.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII 143-D] gi|259167168|gb|EEW51663.1| peptidylprolyl isomerase PrsA1 [Lactobacillus iners DSM 13335] gi|308165312|gb|EFO67546.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 09V1-c] gi|311089431|gb|EFQ47857.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 2053A-b] gi|315489536|gb|EFU79173.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus iners ATCC 55195] gi|325476604|gb|EGC79762.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII 143-D] Length = 297 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%) Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + N PE + I L + I+ + + +++ + K V+ ++ Sbjct: 99 QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333 + A + + L KG F LA++ + + D ++ F L Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + FGY I + IK SFQ K +I ++ A ++ Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIIARIYQKMAQDQ 260 Score = 41.1 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%) Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533 KK WK V+ + K A +++ E K G +F+D+ K T+ Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188 Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590 I D+ + D F P++ Y + K + + G Q K + Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248 Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 I+ + Q M +D ++ SV+ + + +V + DN ++ L Sbjct: 249 IARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287 Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 +L F AL + S TV + K+ F N + Sbjct: 11 LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + + IL N++ TL Q G + +V + K F Sbjct: 47 VKKSPAGQAILANMIINKTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 L + G+ + Y + L + + +A + Y V +I++ Sbjct: 97 VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153 Query: 200 RHVPAIA 206 Sbjct: 154 EDTAKKV 160 >gi|169633358|ref|YP_001707094.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii SDF] gi|169152150|emb|CAP01052.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii] Length = 441 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 52/406 (12%), Positives = 128/406 (31%), Gaps = 71/406 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 31 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 85 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 86 LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 140 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 141 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 200 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY------- 257 + + + + + D ++ + + + + EL A Sbjct: 201 VQNVA-KEVRSQLAQNNDLNALKKFSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQ 259 Query: 258 -------------------EKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQSL 290 ++N++K P+ +T L+ P++ + D ++ L Sbjct: 260 TTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRL 319 Query: 291 KKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K G+ F LA + G + SLG + + + + G+ + F Sbjct: 320 KAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQF 377 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ I V++ + KD+ ++ + A + + E E Sbjct: 378 GWHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413 Score = 42.7 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%) Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 +G+ E E ++ + + + + L+Q K++ D LN Sbjct: 54 QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 110 Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + L + +K +N R+ + ++ + +I+IS+ ++ Sbjct: 111 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 170 Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + + + V + Q A E L + L ++ + Sbjct: 171 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQNNDLNAL-KKFSTATV 229 Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355 + + D+ + + + G T +I G + + Sbjct: 230 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 289 Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS + K+ I + + KA E Sbjct: 290 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334 >gi|237704199|ref|ZP_04534680.1| surA [Escherichia sp. 3_2_53FAA] gi|226902111|gb|EEH88370.1| surA [Escherichia sp. 3_2_53FAA] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 52/387 (13%), Positives = 123/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PSSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPSSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|186470963|ref|YP_001862281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] gi|184197272|gb|ACC75235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia phymatum STM815] Length = 259 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 31/211 (14%) Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD- 284 P + I + + E + Y N ++ E ++F D Sbjct: 58 TPGTATVDAIERLLEHALRVPEPDEHACRRYYAANPGRHAPGERVHARHILFAVTPGVDI 117 Query: 285 EAFQSLKK-------------GKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADS 328 EA + L + G++F + A+E + LG F+ LA Sbjct: 118 EALRRLAEASLVDLRCDAVEHGERFARAAKELSNCPTGDAGGELGWFTAAECV-PELARE 176 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 +F L G ++ FG+ I V + + T F+ V+ IA +R Sbjct: 177 LFGLPYVGVLPRLVATRFGFHIVDVLARERANTPPFETVRAAIAQTLRQ-------HAFA 229 Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 L ++++L ++ + ++ ++L Sbjct: 230 NALRQYVSL------LAAQAELCGVELDGTA 254 >gi|324997548|ref|ZP_08118660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp. P1] Length = 475 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 78/199 (39%), Gaps = 7/199 (3%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 ++++ ++++ +++ + ++ PE R V +V ++ A + Sbjct: 276 KRQMAAAQLFQQVTADIPQVTDADVETAFGDRRDALAMPERRAVSNIVVRDEAAAQQILG 335 Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L+ G+ F +A + + ++G+ + + + AD+ F A+ + Sbjct: 336 DLQGGRPFADVARARSADAATREAGGAIGTLAAAQL-EKPFADAAFG-AEPNVPFGPVKT 393 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY-KRLEEFLALGTSMDE 403 G+ + VS ++ + Q V++ + +++ ++++ + RL++ Sbjct: 394 QHGWNVGVVSEVQAAVPADLQTVREPLRQRLQGERSADAWQAFLGNRLDDAGVRYNDAYV 453 Query: 404 ISRREKIVSIDLPLVDFAG 422 + + + + L G Sbjct: 454 PADPDGLPADPSALTPSPG 472 >gi|320449245|ref|YP_004201341.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus scotoductus SA-01] gi|320149414|gb|ADW20792.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus scotoductus SA-01] Length = 605 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 69/656 (10%), Positives = 170/656 (25%), Gaps = 144/656 (21%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG- 72 I +L + F + L + + V + + ++ +L + Sbjct: 9 ITILFGLLALAFA---VGAILLFTPQAGQQAR--GKPVLWVNGKAVYELDLLRLQGNDPL 63 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + N + +D L+ ++ L Q + V E+ R + Sbjct: 64 YAANPQGLLKTLVDTHFLEQVILTEALKQDAAR--IRVGSAEVRKEVDRI---REQFGLK 118 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + L + G + + L + Sbjct: 119 EKKAYEQFLNQVGYTDAQLRSEIKTQLQIQKRLEQIRSA--------------------- 157 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 A P+ + +FE ++++Y+ + Sbjct: 158 -------------AKPTPEEVRFYFEVHQEDYKGEPRLK--------------------- 183 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK--SLSDI 310 Q+V K A E K G+ F LA++ K + Sbjct: 184 -------------------ARQIVVDEAKLAAELLAKAKAGEDFAALAKQYSKVGAEQGG 224 Query: 311 SLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +LG+ E P +A+++F+ G PV G Y + V P+ Sbjct: 225 ALGAGPGESEPKPVTKVVFPDKVAEAVFAQKGPGLVGPVEAG-GRYYLVKVEEYLPAKVP 283 Query: 363 SFQEVKKDIANQMRITK---ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 +F+E+K+ + + K A E E+ ++ + S + ++ Sbjct: 284 TFEEIKEQVEKDAQAAKGNGALEAYLENLRQKAQVRFAEDSPFSYKNLPVAKVNEQEILL 343 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 +Q L + + ++ + + + Sbjct: 344 AQVLQPVFSNQQTAALIQQGLGDLAVQFFLPQTLESLIERELLVEAAKKSG------KPF 397 Query: 480 EEVLTDVKKDW----------KTVKTAE----------------------EVSSKANQLV 507 + + + + + +KA Sbjct: 398 IGSKDQIAQAYLLYETRGLTATEEEARRFYAENPALFTIPASAEVTGVVFKAEAKAKAFR 457 Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVF-SGPVEMVKCFPI 565 + G + + + K ++ ++ + + F GP+ V Sbjct: 458 EAALRGG-DLQALAKAQEGTVTEYGTVSPNQLPAVLDRLVFKVKETFPKGPMGEVSEVVK 516 Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617 ++ V V N K ++ ++ + + + + +++ L+ + Sbjct: 517 LEDGTFAVLLVKNRKPEVLKPFNEVVEEAKERVILSKRQQKGQALVQELRKAAKIE 572 Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 12/192 (6%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 + +E + Y +N + P V +VF + +A ++ +G LA+ Q + Sbjct: 417 TATEEEARRFYAENPALFTIPASAEVTGVVFKAEAKAKAFREAALRGGDLQALAKAQEGT 476 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKK------GDFTPVIHGSFG-YVIAHVSNIKPS 359 ++ G+ S +P V L +F + + G+ + V+ G + + V N KP Sbjct: 477 VT--EYGTVSPNQLPAV-LDRLVFKVKETFPKGPMGEVSEVVKLEDGTFAVLLVKNRKPE 533 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL--PL 417 F EV ++ ++ ++K +K + + L + + + ++ + + P Sbjct: 534 VLKPFNEVVEEAKERVILSKRQQKGQALVQELRKAAKIENRLSQVLAELTPKTQEPAKPP 593 Query: 418 VDFAGKDVKGKE 429 A K+ K Sbjct: 594 TQEAPKEAPAKP 605 Score = 41.9 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 13/168 (7%) Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K + K E G + +++ ++ + V + A + + Sbjct: 448 KAEAKAKAFREAALRGGDLQALAKAQEGTVTEYGTVS------PNQLPAVLDRLVFKVKE 501 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 F K V L DG++ + +K P + EV+ + K+ K + K Sbjct: 502 TFPKGPMGEVSEVVKLEDGTFAVLLVKNRKPEVLKPFNEVVEEAKERVILSKRQQ----K 557 Query: 503 ANQLVLEYSKEGKN---FRDIGKNLGASLLTTNQINRMDNENKFFGYD 547 LV E K K + L + + + Sbjct: 558 GQALVQELRKAAKIENRLSQVLAELTPKTQEPAKPPTQEAPKEAPAKP 605 >gi|301631501|ref|XP_002944836.1| PREDICTED: probable parvulin-type peptidyl-prolyl cis-trans isomerase-like [Xenopus (Silurana) tropicalis] Length = 262 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQ 298 + +KK +S+ E+QAEY+K E + V ++ + EA S+K+G KF Sbjct: 105 ADYQKKNPVSDAEIQAEYDKFVASNSGKEYK-VSHILVEKEDEAKSIIASIKQGSAKFED 163 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 +A++Q K + G P+ +++ L K + FG+ + + + Sbjct: 164 IAKKQSKDPGSGARGGDLDWANPNSYVSEFTEAMLKLKKGEMTAEPVKSQFGWHVIRLDD 223 Query: 356 IKPSFTVSFQEVKK 369 + + +EVK Sbjct: 224 ERQAQLPKQEEVKP 237 >gi|21230267|ref|NP_636184.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769740|ref|YP_244502.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. 8004] gi|81304306|sp|Q4UR41|SURA_XANC8 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|81796311|sp|Q8PCE1|SURA_XANCP RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|21111813|gb|AAM40108.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575072|gb|AAY50482.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. campestris str. 8004] Length = 463 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 45/406 (11%), Positives = 101/406 (24%), Gaps = 68/406 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRDNQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 E G+ + IA + N S D +LA +G+ ++ + Sbjct: 87 VGRAEGSGIRVSDEELNRAIASI----AQQNGTSVDGLRQKLAADGMGYADFRASVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213 + F + S +D + + L + V + + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVD--TALAQQATTGSQYHLAHILVGLPEGATAEQIATGQK 200 Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISNDE----- 252 +K + ++ A + + + D I + + Sbjct: 201 KVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVA 260 Query: 253 ----------LQAEYEKNKEKYFSPEIRT----VEQLVF---------PNQKEADEAFQS 289 L E + ++ + + D Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKVLTEYNARHILVRIGDNQTEAQAKAKIDTLRAR 320 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F A+E + + LG F + + L G + Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLT-DGAVSEPFRTQ 378 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + S + + I + K E+ + L Sbjct: 379 AGWHIVQRVGTRQTDV-SAENQRAQIRETIGRRKLEEEYNRYLQEL 423 >gi|218547503|ref|YP_002381294.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia fergusonii ATCC 35469] gi|218355044|emb|CAQ87650.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia fergusonii ATCC 35469] gi|324112544|gb|EGC06521.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii B253] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 110/369 (29%), Gaps = 57/369 (15%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 + L +IL+ L+ L Q + +G++ ++ IA K N Sbjct: 54 AQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQNNM 109 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRS 191 + D SRLA +G+N Y + K + ++V + ++ + Sbjct: 110 TLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRISILPQEVESLAQQVGNQND 169 Query: 192 VDY------IVLNNRHVPAIADPSNAVLTQW------------------FEKYKDNY--- 224 I++ P+ + A + + Sbjct: 170 ASTELNLSHILIPLPENPSSDQVNEAESQARAIVDQARNGADFGKLAISYSADQQALKGG 229 Query: 225 -----RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQ 274 R E I +K + + K + + Sbjct: 230 QMGWGRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDLRGGSQNISVTEVHARH 289 Query: 275 LVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++A ++ +K GK F A+E + + G ++ I Sbjct: 290 ILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIF 349 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D + D++ L KG + +H SFG+ + + + + + + K + K S Sbjct: 350 DPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKTDAAQKDRAYRMLMNRKFS 407 Query: 382 EKVKEDYKR 390 E+ + Sbjct: 408 EEAASWMQE 416 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRISILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA + G I + + Sbjct: 184 PENPSSDQVNEAESQARAIVDQARNGADFGKLAISYSADQQALKGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT-VSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ +S EV I + E+ Sbjct: 244 AQALSTAKKGDVVGPIRSGVGFHILKVNDLRGGSQNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360 >gi|333010545|gb|EGK29978.1| chaperone surA [Shigella flexneri VA-6] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|15799738|ref|NP_285750.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 EDL933] gi|15829312|ref|NP_308085.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. Sakai] gi|16128047|ref|NP_414595.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str. K-12 substr. MG1655] gi|24111499|ref|NP_706009.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str. 301] gi|26245979|ref|NP_752018.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli CFT073] gi|30061620|ref|NP_835791.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str. 2457T] gi|74310672|ref|YP_309091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sonnei Ss046] gi|82542659|ref|YP_406606.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii Sb227] gi|89106937|ref|AP_000717.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12 substr. W3110] gi|91209115|ref|YP_539101.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UTI89] gi|110804119|ref|YP_687639.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 5 str. 8401] gi|117622343|ref|YP_851256.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli APEC O1] gi|157155530|ref|YP_001461225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E24377A] gi|168751687|ref|ZP_02776709.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4113] gi|168756884|ref|ZP_02781891.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4401] gi|168762820|ref|ZP_02787827.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4501] gi|168766748|ref|ZP_02791755.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4486] gi|168776976|ref|ZP_02801983.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4196] gi|168781757|ref|ZP_02806764.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4076] gi|168785111|ref|ZP_02810118.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC869] gi|170021589|ref|YP_001726543.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ATCC 8739] gi|170079716|ref|YP_001729036.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str. K-12 substr. DH10B] gi|170682162|ref|YP_001742174.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SMS-3-5] gi|188493538|ref|ZP_03000808.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 53638] gi|191169148|ref|ZP_03030907.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B7A] gi|191174100|ref|ZP_03035614.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli F11] gi|193066223|ref|ZP_03047276.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E22] gi|193070992|ref|ZP_03051921.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E110019] gi|194434546|ref|ZP_03066804.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae 1012] gi|194439697|ref|ZP_03071767.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 101-1] gi|195937729|ref|ZP_03083111.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4024] gi|208807378|ref|ZP_03249715.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4206] gi|208812243|ref|ZP_03253572.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4045] gi|208818190|ref|ZP_03258510.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4042] gi|209398433|ref|YP_002268663.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4115] gi|209917245|ref|YP_002291329.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SE11] gi|215485217|ref|YP_002327648.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O127:H6 str. E2348/69] gi|217325032|ref|ZP_03441116.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. TW14588] gi|218552638|ref|YP_002385551.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI1] gi|218556994|ref|YP_002389907.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli S88] gi|218687931|ref|YP_002396143.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ED1a] gi|218693525|ref|YP_002401192.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 55989] gi|218698475|ref|YP_002406104.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI39] gi|218703314|ref|YP_002410833.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMN026] gi|227885046|ref|ZP_04002851.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972] gi|238899458|ref|YP_002925254.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli BW2952] gi|253774915|ref|YP_003037746.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037470|ref|ZP_04871547.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|254160178|ref|YP_003043286.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B str. REL606] gi|254791192|ref|YP_003076029.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. TW14359] gi|256020107|ref|ZP_05433972.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sp. D9] gi|256025370|ref|ZP_05439235.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia sp. 4_1_40B] gi|260842290|ref|YP_003220068.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str. 12009] gi|260853267|ref|YP_003227158.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str. 11368] gi|260866207|ref|YP_003232609.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str. 11128] gi|261226813|ref|ZP_05941094.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli O157:H7 str. FRIK2000] gi|261255216|ref|ZP_05947749.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O157:H7 str. FRIK966] gi|291280879|ref|YP_003497697.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615] gi|293403128|ref|ZP_06647225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli FVEC1412] gi|293408148|ref|ZP_06651988.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354] gi|293417931|ref|ZP_06660553.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185] gi|293476717|ref|ZP_06665125.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088] gi|297516939|ref|ZP_06935325.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli OP50] gi|298378656|ref|ZP_06988540.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli FVEC1302] gi|300900923|ref|ZP_07119058.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1] gi|300919606|ref|ZP_07136098.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1] gi|300928648|ref|ZP_07144167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1] gi|300948657|ref|ZP_07162741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1] gi|300956983|ref|ZP_07169235.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1] gi|300981029|ref|ZP_07175306.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1] gi|300984196|ref|ZP_07176924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1] gi|301024798|ref|ZP_07188436.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1] gi|301048439|ref|ZP_07195466.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1] gi|301648380|ref|ZP_07248116.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1] gi|306815347|ref|ZP_07449496.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101] gi|307136656|ref|ZP_07496012.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli H736] gi|307311493|ref|ZP_07591135.1| Peptidylprolyl isomerase [Escherichia coli W] gi|309796042|ref|ZP_07690454.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7] gi|312966176|ref|ZP_07780402.1| chaperone surA [Escherichia coli 2362-75] gi|312970148|ref|ZP_07784330.1| chaperone surA [Escherichia coli 1827-70] gi|331640505|ref|ZP_08341653.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli H736] gi|331645163|ref|ZP_08346274.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli M605] gi|331661095|ref|ZP_08362027.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA206] gi|331671573|ref|ZP_08372371.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA280] gi|331681439|ref|ZP_08382076.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli H299] gi|332281260|ref|ZP_08393673.1| survival protein surA [Shigella sp. D9] gi|81174735|sp|P0ABZ8|SURA_ECO57 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|81174736|sp|P0ABZ7|SURA_ECOL6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|81174737|sp|P0ABZ6|SURA_ECOLI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; AltName: Full=Survival protein A; Flags: Precursor gi|81174738|sp|P0ABZ9|SURA_SHIFL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|121956477|sp|Q326I0|SURA_SHIBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|121956482|sp|Q3Z5V6|SURA_SHISS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|122070645|sp|Q1RGE4|SURA_ECOUT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|12512748|gb|AAG54358.1|AE005182_7 survival protein [Escherichia coli O157:H7 str. EDL933] gi|26106376|gb|AAN78562.1|AE016755_62 Survival protein surA precursor [Escherichia coli CFT073] gi|1786238|gb|AAC73164.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str. K-12 substr. MG1655] gi|13359514|dbj|BAB33481.1| survival protein [Escherichia coli O157:H7 str. Sakai] gi|24050252|gb|AAN41716.1| survival protein [Shigella flexneri 2a str. 301] gi|30039862|gb|AAP15596.1| survival protein [Shigella flexneri 2a str. 2457T] gi|73854149|gb|AAZ86856.1| survival protein [Shigella sonnei Ss046] gi|81244070|gb|ABB64778.1| survival protein [Shigella boydii Sb227] gi|85674304|dbj|BAB96620.2| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12 substr. W3110] gi|91070689|gb|ABE05570.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UTI89] gi|110613667|gb|ABF02334.1| survival protein [Shigella flexneri 5 str. 8401] gi|115511467|gb|ABI99541.1| survival protein [Escherichia coli APEC O1] gi|157077560|gb|ABV17268.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E24377A] gi|169756517|gb|ACA79216.1| SurA domain [Escherichia coli ATCC 8739] gi|169887551|gb|ACB01258.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str. K-12 substr. DH10B] gi|170519880|gb|ACB18058.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SMS-3-5] gi|187767718|gb|EDU31562.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4196] gi|188014319|gb|EDU52441.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4113] gi|188488737|gb|EDU63840.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 53638] gi|189000667|gb|EDU69653.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4076] gi|189356117|gb|EDU74536.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4401] gi|189363909|gb|EDU82328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4486] gi|189366936|gb|EDU85352.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4501] gi|189375016|gb|EDU93432.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC869] gi|190900823|gb|EDV60613.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B7A] gi|190905594|gb|EDV65219.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli F11] gi|192926148|gb|EDV80789.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E22] gi|192955722|gb|EDV86196.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E110019] gi|194417199|gb|EDX33310.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae 1012] gi|194421382|gb|EDX37399.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 101-1] gi|208727179|gb|EDZ76780.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4206] gi|208733520|gb|EDZ82207.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4045] gi|208738313|gb|EDZ85995.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4042] gi|209159833|gb|ACI37266.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC4115] gi|209746874|gb|ACI71744.1| survival protein [Escherichia coli] gi|209746876|gb|ACI71745.1| survival protein [Escherichia coli] gi|209746878|gb|ACI71746.1| survival protein [Escherichia coli] gi|209746880|gb|ACI71747.1| survival protein [Escherichia coli] gi|209746882|gb|ACI71748.1| survival protein [Escherichia coli] gi|209910504|dbj|BAG75578.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11] gi|215263289|emb|CAS07604.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli O127:H6 str. E2348/69] gi|217321253|gb|EEC29677.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. TW14588] gi|218350257|emb|CAU95940.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli 55989] gi|218359406|emb|CAQ96945.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli IAI1] gi|218363763|emb|CAR01424.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli S88] gi|218368461|emb|CAR16197.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli IAI39] gi|218425495|emb|CAR06277.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli ED1a] gi|218430411|emb|CAR11278.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli UMN026] gi|222031887|emb|CAP74625.1| chaperone surA [Escherichia coli LF82] gi|226840576|gb|EEH72578.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|227837875|gb|EEJ48341.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972] gi|238861990|gb|ACR63988.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli BW2952] gi|242375892|emb|CAQ30573.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli BL21(DE3)] gi|253325959|gb|ACT30561.1| Peptidylprolyl isomerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972079|gb|ACT37750.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli B str. REL606] gi|253976288|gb|ACT41958.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli BL21(DE3)] gi|254590592|gb|ACT69953.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli O157:H7 str. TW14359] gi|257751916|dbj|BAI23418.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str. 11368] gi|257757437|dbj|BAI28934.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str. 12009] gi|257762563|dbj|BAI34058.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str. 11128] gi|260450738|gb|ACX41160.1| SurA domain protein [Escherichia coli DH1] gi|281177270|dbj|BAI53600.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15] gi|281599414|gb|ADA72398.1| Chaperone surA precursor [Shigella flexneri 2002017] gi|284919836|emb|CBG32891.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase) [Escherichia coli 042] gi|290760752|gb|ADD54713.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615] gi|291321170|gb|EFE60612.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088] gi|291430043|gb|EFF03057.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli FVEC1412] gi|291430649|gb|EFF03647.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185] gi|291472399|gb|EFF14881.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354] gi|294492943|gb|ADE91699.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IHE3034] gi|298280990|gb|EFI22491.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli FVEC1302] gi|299880288|gb|EFI88499.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1] gi|300299732|gb|EFJ56117.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1] gi|300306726|gb|EFJ61246.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1] gi|300316273|gb|EFJ66057.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1] gi|300355586|gb|EFJ71456.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1] gi|300409065|gb|EFJ92603.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1] gi|300413352|gb|EFJ96662.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1] gi|300451883|gb|EFK15503.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1] gi|300463317|gb|EFK26810.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1] gi|301073515|gb|EFK88321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1] gi|305851009|gb|EFM51464.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101] gi|306908472|gb|EFN38970.1| Peptidylprolyl isomerase [Escherichia coli W] gi|307551900|gb|ADN44675.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli ABU 83972] gi|307629629|gb|ADN73933.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UM146] gi|308120284|gb|EFO57546.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7] gi|309700266|emb|CBI99554.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase) [Escherichia coli ETEC H10407] gi|310337646|gb|EFQ02757.1| chaperone surA [Escherichia coli 1827-70] gi|312289419|gb|EFR17313.1| chaperone surA [Escherichia coli 2362-75] gi|312944661|gb|ADR25488.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O83:H1 str. NRG 857C] gi|313646568|gb|EFS11029.1| chaperone surA [Shigella flexneri 2a str. 2457T] gi|315059279|gb|ADT73606.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli W] gi|315134749|dbj|BAJ41908.1| chaperone surA precursor [Escherichia coli DH1] gi|315285117|gb|EFU44562.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3] gi|315298427|gb|EFU57682.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3] gi|315616170|gb|EFU96789.1| chaperone surA [Escherichia coli 3431] gi|320190424|gb|EFW65074.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. EC1212] gi|320197500|gb|EFW72114.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli WV_060327] gi|320200427|gb|EFW75013.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli EC4100B] gi|320647458|gb|EFX16253.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H- str. 493-89] gi|320652792|gb|EFX21030.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H- str. H 2687] gi|320658181|gb|EFX25910.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663490|gb|EFX30774.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7 str. USDA 5905] gi|323166105|gb|EFZ51884.1| chaperone surA [Shigella sonnei 53G] gi|323171213|gb|EFZ56861.1| chaperone surA [Escherichia coli LT-68] gi|323176362|gb|EFZ61954.1| chaperone surA [Escherichia coli 1180] gi|323181750|gb|EFZ67163.1| chaperone surA [Escherichia coli 1357] gi|323190264|gb|EFZ75540.1| chaperone surA [Escherichia coli RN587/1] gi|323380164|gb|ADX52432.1| SurA domain protein [Escherichia coli KO11] gi|323935106|gb|EGB31473.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520] gi|323939725|gb|EGB35927.1| ppic-type ppiase domain-containing protein [Escherichia coli E482] gi|323945684|gb|EGB41732.1| ppic-type ppiase domain-containing protein [Escherichia coli H120] gi|323950947|gb|EGB46824.1| ppic-type ppiase domain-containing protein [Escherichia coli H252] gi|323955251|gb|EGB51024.1| ppic-type ppiase domain-containing protein [Escherichia coli H263] gi|323960002|gb|EGB55648.1| ppic-type ppiase domain-containing protein [Escherichia coli H489] gi|323970727|gb|EGB65981.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007] gi|324008401|gb|EGB77620.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2] gi|324012311|gb|EGB81530.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1] gi|324017678|gb|EGB86897.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3] gi|324118405|gb|EGC12299.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167] gi|326345227|gb|EGD68970.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. 1125] gi|326346920|gb|EGD70654.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. 1044] gi|331040251|gb|EGI12458.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli H736] gi|331045920|gb|EGI18039.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli M605] gi|331052137|gb|EGI24176.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA206] gi|331071418|gb|EGI42775.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA280] gi|331081660|gb|EGI52821.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli H299] gi|332097929|gb|EGJ02902.1| chaperone surA [Shigella dysenteriae 155-74] gi|332098944|gb|EGJ03895.1| chaperone surA [Shigella boydii 3594-74] gi|332103612|gb|EGJ06958.1| survival protein surA [Shigella sp. D9] gi|332341385|gb|AEE54719.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMNK88] gi|332762289|gb|EGJ92556.1| chaperone surA [Shigella flexneri 2747-71] gi|332762614|gb|EGJ92879.1| chaperone surA [Shigella flexneri 4343-70] gi|332764896|gb|EGJ95124.1| chaperone surA [Shigella flexneri K-671] gi|332768842|gb|EGJ99021.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 2930-71] gi|333009456|gb|EGK28912.1| chaperone surA [Shigella flexneri K-218] gi|333011437|gb|EGK30851.1| chaperone surA [Shigella flexneri K-272] gi|333021676|gb|EGK40925.1| chaperone surA [Shigella flexneri K-227] gi|333022418|gb|EGK41656.1| chaperone surA [Shigella flexneri K-304] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|164686191|ref|ZP_02210221.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM 16795] gi|164601793|gb|EDQ95258.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM 16795] Length = 198 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 33/201 (16%) Query: 214 TQWFEKYKDNYRAPEYK---RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 ++FEK + E K RI L E+ +S DE + +EKNK Y Sbjct: 3 KEYFEK----FNLTEEKLKQRIKKELMGAKYLEEYSNVSEDEARNYFEKNKNDYK---QI 55 Query: 271 TVEQLVF----------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DIS 311 ++ N+K A+E + G+ F LA+E S Sbjct: 56 RASHILISNYDSNNKEVSDDKKEENKKTAEEVLKLALDGEDFATLAKEYSDDSSASKGGD 115 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG F+++ + + + + FSL + V+ S GY I + K +VK D+ Sbjct: 116 LGYFTQDEMV-SAFSKAAFSLKTGEIYNKVVETSSGYHIIKKTGEKDQDFD---DVKDDL 171 Query: 372 ANQMRITKASEKVKEDYKRLE 392 + TK S +++ Y + + Sbjct: 172 IKTLESTKQSTLMQDLYTKYD 192 >gi|119503111|ref|ZP_01625196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma proteobacterium HTCC2080] gi|119461457|gb|EAW42547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma proteobacterium HTCC2080] Length = 297 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 102/252 (40%), Gaps = 27/252 (10%) Query: 159 LSRTDVVGMFVGGMRP--SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 LSR +V G + +++ LD+A R+ F ++++ + + + + Sbjct: 34 LSRAEVEFALAGSPKQIRNSVQLDEASRYEF----FVTLLVSKKILAELQALDVSENPAA 89 Query: 217 FEKYKDNYRAPEY-KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + ++ ++ E + + LF E+ L+ + PEIR + Sbjct: 90 Y--HQFLFKQLETARELDKQLFQNELVLPDFEV--LALERYKISKNDIAPVPEIREASHI 145 Query: 276 V---FPNQKEADEAFQ-------SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI----- 320 + N EA EA + L++G+ F LA E + + G + I Sbjct: 146 LRLCTDNCDEASEAIETLQSLKNRLEQGESFANLAIEFSQDPGSKTRGGRLSQGIERDAE 205 Query: 321 -PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 D + D++F++ + G F+ ++ FG+ I + +I S T SF+EV+ + ++ Sbjct: 206 NVDQVVRDALFAIPEVGGFSDIVRSRFGFHILKLESITASRTRSFEEVRPALVAEIEKRF 265 Query: 380 ASEKVKEDYKRL 391 + +E L Sbjct: 266 RQDAYRERLLSL 277 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 4/129 (3%) Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 + + E + L+ L G S ++ S D G+ +G E A + + Sbjct: 156 ASEAIETLQSLKNRLEQGESFANLAIEF---SQDPGSKTRGGRLSQGIERDAENVDQVVR 212 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 +F + V G + ++++ +R R EEV + + + + Sbjct: 213 DALFAIPEVGGFSDIVRSRFG-FHILKLESITASRTRSFEEVRPALVAEIEKRFRQDAYR 271 Query: 501 SKANQLVLE 509 + L E Sbjct: 272 ERLLSLAPE 280 >gi|87311619|ref|ZP_01093736.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula marina DSM 3645] gi|87285622|gb|EAQ77539.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula marina DSM 3645] Length = 558 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 36/265 (13%) Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMR--------PSNLLLD-------QAKRFYFENRSVD 193 +E ++ +M R + G+ M P + L + Q + ++ Sbjct: 270 EEVLEEQRQMALRELLPGLIDTKMIYLDFIRTIPPDKLSEMQGHLDSQYAEYQMQSDLDQ 329 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 Y V + + + L EK K + E S L + E+S+ ++ Sbjct: 330 YEVHTPAELDIVLRREGSSL----EKKKRLFL--EQIVASQQLKT--HVKPNTEVSHQQM 381 Query: 254 QAEYEKNKEKYFSPEIRTVEQLV-----FPNQKEADEAFQSLKK----GKKFIQLAEEQG 304 Y + Y SP EQL+ F ++ EA++A + G +A+++ Sbjct: 382 LDYYHDHAADYASPARAKWEQLMVRFDKFSSKAEAEQAIAEMGNQVLRGAPLDAVAKKES 441 Query: 305 K---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + + ++ + + ++ +IFSL + +I GY I V + Sbjct: 442 QCFRASEGGLYDWTTRNSLKNETIDAAIFSLPTN-RLSQIIESPEGYHIVRVLERDEASI 500 Query: 362 VSFQEVKKDIANQMRITKASEKVKE 386 F++ + +I ++R +A++ ++ Sbjct: 501 KPFRDAQLEIKEKIRRERANQAQRD 525 >gi|325851854|ref|ZP_08171019.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A] gi|325484696|gb|EGC87609.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A] Length = 474 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 66/431 (15%), Positives = 140/431 (32%), Gaps = 52/431 (12%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPE-I 269 + + + D P +++ + + I ++ DE + Y K++ + + Sbjct: 70 VQAALDAHLD--TLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGL 127 Query: 270 RTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS--- 314 ++ ++ AD + +L++G F LA+ S G Sbjct: 128 WHCAHILIGMGQHTSKEEEAAARQLADSIYTALQRGADFANLAKRYSTDTSSAKNGGDLP 187 Query: 315 -FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 K ++ +L K G+ + + FGY I + + + ++ DI Sbjct: 188 RLQKGQTV-AEFEKAMLTL-KPGETSRPMLSPFGYHIIRMIGHE--SLPPYDSLRADIMQ 243 Query: 374 QMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + + +++ +RL+ + A G + +E+I+ L ++ D+K Sbjct: 244 YIEMRGLRDQIIN--QRLDSLVQAGGKDI----TQEQILDRKLAELEEKDADLKH---LI 294 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 Y + LL K +Y K+ A R Sbjct: 295 REYHDGLLMVEMSNRTVWDKVAKDETALEAYFRKHRKQYKWAEPR--------------F 340 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552 A V KA+ ++ +G F + L + I R+ E F + + Sbjct: 341 KGIAYHVKKKADVDAVKECVKGLPFSKWAERLRNTFNKDGNI-RIRVEKGIFRKGDNALI 399 Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 G Y + V K+ +E D + ++L S +A L+ Sbjct: 400 DREVFGQKATVAPVEG--YPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRR 457 Query: 613 QYSVTVHDNLI 623 +Y V + ++ Sbjct: 458 KYKVVIDKAVL 468 >gi|323491007|ref|ZP_08096201.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2] gi|323395363|gb|EGA88215.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2] Length = 313 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 115/387 (29%), Gaps = 119/387 (30%) Query: 6 RKASRTWVAKIFLVVL---FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62 R V + V+L + F+ W + + + V SV + + ++ S ++ Sbjct: 21 RHLKTKPVLMVIGVLLLFNILWFIAWLIPN---DTGKAEKVASVSGEAITREEWLASMEE 77 Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 + G + L LV+ + +D G+E + E+A Sbjct: 78 QHGR---------------------EALLELVNEKVMATAAQDYGIEVSDKEIDLELA-- 114 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 +V G + +D A Sbjct: 115 -----------------------------------------LVRSSRDGTEAALYTVDDA 133 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + + + ++ + + + +++ + Y Sbjct: 134 R----QREKIKAQLILEKVLTKDVVIEKEEIKAFYDDNESLY------------------ 171 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 +++ Y +V + EA+E + L+KG F A E Sbjct: 172 ---------DVKDSY-------------RTRIIVLNSSAEAEETIKELEKGSSFEATARE 209 Query: 303 QGKSLSDISLGSF-----SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +LG + E D ++A ++ + G +P+ + I V+ Sbjct: 210 RSIDSATGNLGGDIGYISNGEPGVDANVAKAVSKVEVGGWSSPLPLETGKTAIISVTEKV 269 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKV 384 T S+++V+ I ++ + + + V Sbjct: 270 NGQTFSYEDVEGHINRELALEQLPQAV 296 Score = 38.0 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 11/157 (7%) Query: 349 VIAHVSNIKP--SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 V+ IK S +VK ++ + +S + +E K LE G+S + +R Sbjct: 153 VVIEKEEIKAFYDDNESLYDVKDSYRTRIIVLNSSAEAEETIKELE----KGSSFEATAR 208 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 I S L G G+ P + + + K + + L G + Sbjct: 209 ERSIDSATGNLGGDIGYISNGE-----PGVDANVAKAVSKVEVGGWSSPLPLETGKTAII 263 Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503 + E + + E+V + ++ + + V+ +A Sbjct: 264 SVTEKVNGQTFSYEDVEGHINRELALEQLPQAVTPEA 300 >gi|157159524|ref|YP_001456842.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli HS] gi|157065204|gb|ABV04459.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli HS] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ + D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDVFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDVFDPAFRDALTRL 360 >gi|315607432|ref|ZP_07882428.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574] gi|315250864|gb|EFU30857.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574] Length = 474 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 63/413 (15%), Positives = 139/413 (33%), Gaps = 67/413 (16%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIR--------TVEQLVFPNQKEA-------- 283 ++ + +++ +++A K ++ Y + R ++ + A Sbjct: 93 DQQVRPTLVTDADVEA---KARDIYRETQQRVDGGGGLLKTSHILLLLDQNATKTQQNAA 149 Query: 284 ----DEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 D + +LKKG F LA ++ +++ L + + + D ++L KK Sbjct: 150 KVRIDSVYNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVK-AYEDVAYAL-KK 207 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G+ + +GY + + + +P F + VK I + + + RL+E Sbjct: 208 GEISKPFLSEYGYHVVKLDDKQPFF--PYDSVKTSIYQFIESRGLRDAI--VTDRLQEEA 263 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 +G + E K + + Y + LL K Sbjct: 264 KVGNTTPEQLLDAKTEELTAKD--------DALKYLIKEYHDGLLLYEISNRTVWDKAAK 315 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 +Y K+ R A V + ++ ++ S +GK Sbjct: 316 DEAGLSAYFAKNKKKYRWEEPR--------------FKGIAYHVKTASDVDAVKRSIKGK 361 Query: 516 NFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGI--SQVFSGPVEM--VKCFPIENGLS 570 F + L + + + R++ G + + +VF PV + V+ +PI+ Sbjct: 362 PFAEWADILRTTFNNDSVLRIRVEKGIFKKGDNAVVDKEVFKVPVTVKPVEGYPIDATFG 421 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 V+ K P +D + L + L+ +Y+V ++ ++ Sbjct: 422 KVL------KNKPEDYQDVRALVVAD-YQDALEKQWVESLRKKYTVVINKEVL 467 >gi|261880635|ref|ZP_06007062.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM 17361] gi|270332677|gb|EFA43463.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM 17361] Length = 713 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 88/730 (12%), Positives = 196/730 (26%), Gaps = 143/730 (19%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR SR + + + F+ +A S S + V K+ + F Sbjct: 4 LGKIR--SRGITLIVIIGIGLFAFI---AEEAFRSCESSRNNQRQQIGEVLGDKISYEEF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + + +N + L ++ V ++ + +GL + Sbjct: 59 AKLVDESQEAMKLMGQDNLNDAQLNQ--LRDQVWQGYVQYKIIENECDKLGLTVTDAEMQ 116 Query: 117 --------GEIARSPLFHGKDNKFSHDVFVSRLA----REGINEKEYIDH---------- 154 + +P + + +F + LA ++ N + Sbjct: 117 NVLNEGTNQMLLSTPFVNQQTGRFDANQLKQFLAQYKAQQNTNPQVAEQMQAIYKYWTFI 176 Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLD------------QAKRF-------------- 185 + L G+ + + Q + Sbjct: 177 EKSLRQQLLIQKYNGLLAHCFLSNPIEAKKSFEDENQESQIQLAAYPYSSIEDSKVEIKD 236 Query: 186 ----------------YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 Y E+R + Y+ + A + ++ + E Sbjct: 237 SELKDKYSELKKRFQQYVESRDIKYVSVQINASAADRAALQKQFVGYAKELAEAADPSEV 296 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYE-----------KNKEKYFSPEIRTVEQLVFP 278 R + E ++ + + +NK+ ++ + + P Sbjct: 297 VRKATSSIPYLGIPVGKEAFPADIAQKIDSMSVGQTSSPVENKQDNTLNIVKLIAKQQLP 356 Query: 279 NQ-----------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 + K AD + +L G F +A++ G+ + + + E+ P Sbjct: 357 DSVKFRAIQVGGTTPDEAHKRADSIYNALNAGADFAAIAKKYGQDGQEQWMTTRQYEFAP 416 Query: 322 --DVSLADSIFSLAKKGD-----FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374 D ++ L G + G +I V + K V I Sbjct: 417 SMDKDTKQYLYDLMTMGVNQMKSISLPQ----GNIIVQVLDRKNMINKYTAAV---IKKT 469 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + +K + + + F + + ++I + ++ +A I Sbjct: 470 IDYSKETR--GTIFNKFSSFASANQTPEDIIKNAPKNGYNVQEAKDV--TTAQHYLAGIR 525 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI-KESIPARDRKLE--EVLTDVKKDWK 491 L +F + +G+ + + I + P R L+ +V VK++ Sbjct: 526 STRDALKWLFDAKEGEVSQMYECGDNGNNLLIVICDKIHPVGYRGLDDAQVKELVKQEVM 585 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYD 547 K A+ + +KA N K GA + NQ+ Sbjct: 586 RDKKADMLIAKAKT---------ANSIAAAKAKGAQVTEVNQVTFAAPVFIQTTGASEPA 636 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDSV 606 V + P++ F V + + + L Q ++ + Sbjct: 637 LSGAVAATKQGAFSARPVKGQAGVYQFLVMKRTKNAAKFDAKQQEQKLRQRAMQNAGN-F 695 Query: 607 IAYLKSQYSV 616 + L + V Sbjct: 696 MNELFIKAKV 705 >gi|315293370|gb|EFU52722.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1] Length = 428 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKREQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKREQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|224824918|ref|ZP_03698024.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602589|gb|EEG08766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 244 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 19/170 (11%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQSLKKGKK-F 296 A Y + E++ E T ++FP + +A+ ++ F Sbjct: 74 DEATCLAFYNDHPEQFRQGESATASHILFPLGQGDDVANMLAKAKAEGVLAEVQANPSRF 133 Query: 297 IQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAH 352 LA E S +LG F + + ++FS + G TP ++ FGY + Sbjct: 134 ADLAREHSTCPSGQQGGNLGQFGRGQMV-PEFEQAVFS-TEAGQITPNLVETQFGYHVIQ 191 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSM 401 V++ + ++F+++K+ + + + + E +L EE G SM Sbjct: 192 VNDRQSGGQLAFEDIKERLGQYLNEMAGRQMMHEYLSKLVEEAKIEGYSM 241 Score = 38.8 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 4/123 (3%) Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 +KA ++ E F D+ + N + VFS Sbjct: 115 AKAKAEGVLAEVQANPSRFADLAREHSTCPSGQQGGNLGQFGRGQMVPEFEQAVFSTEAG 174 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614 + +E Y V +V + + G K++ YL +M + ++ ++ L + Sbjct: 175 QITPNLVETQFGYHVIQVNDRQSGGQLAFEDIKERLGQYLNEMAGRQMMHEYLSKLVEEA 234 Query: 615 SVT 617 + Sbjct: 235 KIE 237 >gi|168700601|ref|ZP_02732878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata obscuriglobus UQM 2246] Length = 367 Score = 82.0 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 101/337 (29%), Gaps = 68/337 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + +P + + +Q K+I+ +L+ A + Sbjct: 67 TGNAAVVNGKPIPEVAVYRALRQFPEQHRDMA--------------RKEIMAHLIENALI 112 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 D+++ + D V IA + + D + L + E E+ T + Sbjct: 113 DEYLTALKTTVDEKDVEKLIAD---LKKELTEAKKD-YAKELEAMMLTEAEFRSEVTAQM 168 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 V ++A L Q FE Sbjct: 169 KWEKFVQQ---------------------------------------QGTDAALKQLFES 189 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 D + R +IL E K + ++ +L+ K+ + V L Sbjct: 190 SPDVFDG-TMVRARHILMTPGTDEAKRKDADQKLRGI----KQAVEQEAAKAVAALPATA 244 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 A E + K + F A+ S L F + A + F+L K Sbjct: 245 DAVAKEQARVSKTDEMFAAYAKGYSTCPSKKDGGDLNFFPRAGAMVEPFAKAAFAL-KPY 303 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE--VKKDI 371 + V+ FGY + V+ + F++ VK+D+ Sbjct: 304 QMSDVVATEFGYHLILVTQRRQGTPKKFEDKGVKEDV 340 >gi|71907025|ref|YP_284612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] gi|71846646|gb|AAZ46142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] Length = 271 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 84/248 (33%), Gaps = 33/248 (13%) Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEKYKD------ 222 S D+ + S++ +L + + P+ + + ++ Sbjct: 23 SEPERDRLDDIARKQDSIEQRILASAASANVVVPAATVKNRLDEIRARYPANEEFILDMA 82 Query: 223 -------NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + + +S + + Y + E + PE R + + Sbjct: 83 RSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDAEIYYRLHPEAFDRPEARRLRHI 142 Query: 276 VFP---NQKEADEAFQ------SLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV 323 + Q++A +LK KF + A + ++ LG+ ++ + Sbjct: 143 LITFNTPQEKAKAIATLESLRSTLKNPAKFAEAALRHSQCPTAMEGGQLGTVKRKQLY-A 201 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 L + F+L +G+ + V+ G I I PS ++F EV + I ++ + E Sbjct: 202 ELEPAAFAL-NEGEISAVLASPIGLHILRCDEILPSGMLAFGEVCERIIARLGDKRRREA 260 Query: 384 VKEDYKRL 391 +E K L Sbjct: 261 QREWIKSL 268 >gi|288802505|ref|ZP_06407944.1| peptidyl-prolyl cis-trans isomerase [Prevotella melaninogenica D18] gi|288335033|gb|EFC73469.1| peptidyl-prolyl cis-trans isomerase [Prevotella melaninogenica D18] Length = 715 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 79/677 (11%), Positives = 197/677 (29%), Gaps = 115/677 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59 L IR S+ + + + FL + + + G + + +K+ + Sbjct: 4 LGKIR--SKGGILVAAIGLALFAFLAGDAARSCDGIKGEARQQIGEILGKKISVQDYQKL 61 Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG- 117 + I + + + ++ LVS ++ E +GL + Sbjct: 62 IDEYQSAIKFTMQRDNLTDQELNQ--VKDQVWQQLVSNRVIEVDAEKVGLTVTENEIQNV 119 Query: 118 -------EIARSPLFHGKDNKFSHDVFVSRL-----AREGINEK------------EYID 153 + ++P + + +F + A+ + + Sbjct: 120 LNEGTNPMLVQTPFVNQQTGRFDVNALKQFFDSYNKAKAAKSPQVEQMQAIYDYWLFVEK 179 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAV 212 + L + + + A + E + L V ++ Sbjct: 180 NLRAQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAYSTVKDSDVKMTDDD 239 Query: 213 LTQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 L + + K +R E + I ++ F + Sbjct: 240 LKAKYAELKPAFRQNVETRDIKFVDFQIKASAADRS------------------------ 275 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 KE ++ + L + + + G + + L +K Y +A I S Sbjct: 276 ------QVVKEMNDFQKQLASAEDPAAVVSKSGSEIPYLGLPVSNKAYQQYPDIASKIDS 329 Query: 332 LAKKGDFTPVIHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKAS------EKV 384 L+ G V + + I V + K +A+ ++ + + ++ Sbjct: 330 LS-VGTTGVVENAQDNTLNIIRVLS------------KAQLADSIQFRQINIAAATPDEA 376 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++ LA G D +++R + + + LL Sbjct: 377 RAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALL---- 432 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 + ++ +AL G+ + +Q+ + + V+ V ++ S A Sbjct: 433 --NGEVNATQNLALTQGNII-LQVLDKKAFTTKTTAAVIKKVIDF------SKATRSNAY 483 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEM 559 E+ + D+ KN S +N + + G D + +F Sbjct: 484 NKFSEFVAKSSTVADLEKNAPKSGYQVQSLNDISTAEHYVGGIPGTRDALKWLFEAKQGE 543 Query: 560 V-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS-----VIAYLKSQ 613 V + N +V +T P + + + +++ ++++ ++A LK Sbjct: 544 VSPLYECGNNDHLLVIALTAVH--PQGYRSWDDAQVKEILKREVIKDKKAEKLMAKLKG- 600 Query: 614 YSVTVHDNLIQRYLDGE 630 V+ + + Sbjct: 601 ----VNSIAAAQAKGAK 613 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 116/348 (33%), Gaps = 24/348 (6%) Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKG 336 + +AD ++L G F LA+ G++ + E P ++ + F + G Sbjct: 375 EARAKADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNG 434 Query: 337 DFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + + G +I V + K T + V I + +KA+ Y + EF Sbjct: 435 EVNATQNLALTQGNIILQVLDKKAFTTKTTAAV---IKKVIDFSKATR--SNAYNKFSEF 489 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 +A +++ ++ + + ++ V IP L +F Sbjct: 490 VAKSSTVADLEKNAPKSGYQVQSLNDISTAEHY--VGGIPGTRDALKWLFEAKQGEVSPL 547 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 + + + + P R ++ VK+ K + KA +L+ + +G Sbjct: 548 YECGNNDHLLVIALTAVHPQGYRSWDD--AQVKEILKREVIKD---KKAEKLMAKL--KG 600 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGL 569 N + GA + + NQI + SG V P++ Sbjct: 601 VNSIAAAQAKGAKVSSVNQIT-FAAPAFVQATGSVEPALSGAVAGTAAGKFSKAPVKGNA 659 Query: 570 SYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 VF+V S + + + N L+ + + L + V Sbjct: 660 GVYVFQVVKKSMRAGSKYDETLVMQQAAQANMQLVGNFMQDLILKAKV 707 >gi|225677192|ref|ZP_03788188.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590779|gb|EEH12010.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 120 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 + + K+ +V+L + G+ + L V VG++ + + + ++ I Sbjct: 2 NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYEKQI 61 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 S G + E+ + + D +L+ L+ L ++GL I + F Sbjct: 62 S---GSDASREQVKKLKYD--LLNALIEQKLLFNLTSELGLTVGEESTKNHIKNTKYFQN 116 >gi|194429871|ref|ZP_03062383.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B171] gi|194412090|gb|EDX28400.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B171] Length = 428 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWSRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.2 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWSRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|255514246|gb|EET90507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 91 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 ++ A E L KG+ F +LAEE S LG F K + Sbjct: 4 KIRCAHILVEKFSTAQEVLDKLAKGESFAKLAEEYSIDGSRKRGGDLGFFGKGVMV-REF 62 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAH 352 D+ F L +KG + ++ FGY I Sbjct: 63 EDAAFKL-EKGQTSGIVKTQFGYHIIK 88 >gi|228470909|ref|ZP_04055754.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228307306|gb|EEK16320.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 718 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 94/644 (14%), Positives = 220/644 (34%), Gaps = 72/644 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56 L+ IR + + I + V + F+ + D L S S + + +KV + F Sbjct: 4 LQKIRNRAGLLI--IVVGVALLAFI---IGDGLRSGSSLLQDNKMVALKIDGKKVKYDEF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + ++ G + + +R + + ++ L+S L+Q + +GL V Sbjct: 59 QQLLTERTEPYERQ-GKLTDQDR---MQISNQLTQELISDYVLEQEAKAVGLRVTPAEVS 114 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 I L ++ + F G + ++S D+ + + Sbjct: 115 ALIFGEGL---PTSQMAAQFFSQFGVNMG-----DPEQIRSVMSELDLNKIKALPAEQQS 166 Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRISY 234 +++ ++ + + L+ + NA+LT+ + + Y R Sbjct: 167 MMISVRNQWLETEKQIRSQRLSEKL--------NALLTRSYAINSLDEKYTTGLGSRTVA 218 Query: 235 ILFDVHEKE--KKIEISNDELQAEYEKNKEKYFSPEIRT----VEQLVFPNQKEADEAFQ 288 ++ ++++++ +++A Y+ +K+ Y P + LV P++ + A Sbjct: 219 VVRTPSTILPNDQVKVTDQQVRAYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKA 278 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKKGDFTPVI 342 ++ + + K + + G + Y D L + ++ ++G V Sbjct: 279 NVDSARMQLLATTTPDKVVRNYENGHAYETYFTDKELEQFLSTQPNAMTMLREGAIGSVN 338 Query: 343 H---GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399 + Y + + + K + +EVK +I + T A L + G Sbjct: 339 EPVIVNDSYTLIKLIDRKQAP----EEVKVNIIP-LDSTNAP-----KADSLIAAIQSGA 388 Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD-DPLSKDHTVAL 458 + +++ S+D + G + + +P +FG D L+K Sbjct: 389 T--TLAQVVATYSMDDQIKANGGYLINSDQYTGMPDSTFTESELFGMQLDTLNKTPINQF 446 Query: 459 P----DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514 G+ + ++ P+ L ++ + +T + +K N++ K+ Sbjct: 447 VKIERPGATLLIRKTA--PSASVNLYKIAQLTVPINFSEETYRKEQAKINEI-FSGDKKF 503 Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMV--KCFPIENGLS 570 D + G S++ +N + +S V K F N Sbjct: 504 AQMMDAAQKAGLSVVRGEYVNSSSASLASIPNSREIVSWALRSKAGAVSDKIFRCGNNDY 563 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQ-MMNKDLLDSVIAYLKSQ 613 VV +V Q ++ + ++ + D + A L S+ Sbjct: 564 LVVAEVETKYPAGFQPFEQVADQIRDYVLMEQRGDQLAANLASK 607 >gi|167617958|ref|ZP_02386589.1| survival protein SurA, putative [Burkholderia thailandensis Bt4] Length = 448 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAPQADIDAA 209 Query: 212 VLTQWF-----------------------EKYKDN---YRAPEYKRISYILFDVHEKEKK 245 + K ++AP + + + Sbjct: 210 QKKAEGLLQQALASGTNFERLATSQSEADDAKKGGDLGFKAPSSLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|255656245|ref|ZP_05401654.1| putative protein export chaperone [Clostridium difficile QCD-23m63] Length = 140 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 9/117 (7%) Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 +KEA+E + + G+ F LA++ + S LG F K + + S + F+L KKG Sbjct: 16 KKEAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVE-SFEKAAFAL-KKG 73 Query: 337 DFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + ++ +GY I ++ K F+E+K D+ + + K S ++ ++ Sbjct: 74 EVSNKLVESDYGYHIIKKTDEK---YQPFEEIKSDLVSSLTSEKQSLLIQNLKEKYN 127 >gi|166710727|ref|ZP_02241934.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 463 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 48/432 (11%), Positives = 116/432 (26%), Gaps = 72/432 (16%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +L + I L+ A S V V S + + + + + Sbjct: 8 VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L +++L+ L+ + G+ + IA + N + D Sbjct: 68 PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDY 194 +LA +G+ ++ + + F + S +D A + + Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTA--LTQQAATGSK 176 Query: 195 IVLNNRHVPAIADPSNAVL----------TQWFEKYKDNYRAPEYK-----------RIS 233 L + + + + +K + ++ A + + Sbjct: 177 YHLAHILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLG 236 Query: 234 YILFDVHEKEKKIEISN---------------------DELQAEYEKNKEKYFSPEIRTV 272 + D I + E++ ++K + Sbjct: 237 WRSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNA 294 Query: 273 EQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY 319 ++ + + D + G F A+E + + LG F + Sbjct: 295 RHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADA 354 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + SLA G + G+ I + + S + + + + K Sbjct: 355 F-GPDFGKQVESLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRK 411 Query: 380 ASEKVKEDYKRL 391 E+ + L Sbjct: 412 LEEEYNRYLQEL 423 >gi|331006695|ref|ZP_08329972.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [gamma proteobacterium IMCC1989] gi|330419503|gb|EGG93892.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [gamma proteobacterium IMCC1989] Length = 432 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 46/406 (11%), Positives = 112/406 (27%), Gaps = 70/406 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + Q + + +++ L ++LD L+ Sbjct: 37 DGIIAIVKDDIIFAQELEQKIHQAKIRLQAR------NQKTDEKRLQSQLLDALILEKLQ 90 Query: 100 DQFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + L A + IA++ F LA + +++ + K Sbjct: 91 LSLAKQNNLVATDAEIDNSIAQTKAQLQSNGASFDD-----YLAAQNLSQTQARKEIEKE 145 Query: 159 LSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + + V + + ++ +D + +++ + Q Sbjct: 146 VLISKVQQAVISQRINITDTEVD---NYLESKEGQEWLTPRLHLGQIFLPYTAKNKQQTM 202 Query: 218 EKYKDNYRAPEYKRISYILF--------DVHEKEKKIEISNDELQAEYEKNKEKYFSPE- 268 +K + YR + + +F + + ++L + + +K E Sbjct: 203 QKAQKIYRDVSKRTNEFGVFAQRFSQGPNAEKGGDIGIQRKEDLPPLFVERVDKLAVGEI 262 Query: 269 ---------------------------IRTVEQLVFP---------NQKEADEAFQSLKK 292 V ++ QK+ +E + + + Sbjct: 263 TQPFFSDAGVHILALFDRQGAEPVIVTQYKVRHILVKPTDLFTEEEAQKKINELREKIIQ 322 Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 G F +A+E L +G S + ++ + +FG+ Sbjct: 323 GASFATIAQEYSDDIGSKLDGGDVGWSSPGVFV-PAFEKAM-QTTAINTISQPFKSTFGW 380 Query: 349 VIAHVSNIKPSFTVSFQEVK-KDIANQMRITKASEKVKEDYKRLEE 393 I V + F VK + N + + +++ K L E Sbjct: 381 HILTVEGQRSKDI--FDTVKRSQVRNIIGQQRFQDELTIWLKELRE 424 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 85/282 (30%), Gaps = 30/282 (10%) Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 + +EK L + + ++ +D + + + Sbjct: 67 RNQKTDEKRLQSQLLDALILEKLQLSLAKQNNLVATDAEIDNSIAQTKAQLQSNGASFD- 125 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 A + S + EK + ++I I++ E+ E Sbjct: 126 -DYLAAQNLSQTQARKEIEK-----------EVLISKVQQAVISQRINITDTEVDNYLES 173 Query: 260 NKEKYFSPEIRTVEQLVFP--------NQKEADEAFQSLKKGKK----FIQLAEEQGKSL 307 + + + + Q+ P ++A + ++ + K F Q + + Sbjct: 174 KEGQEWLTPRLHLGQIFLPYTAKNKQQTMQKAQKIYRDVSKRTNEFGVFAQRFSQGPNAE 233 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 +G KE +P + + LA G+ T G I + + + + V + Sbjct: 234 KGGDIGIQRKEDLP-PLFVERVDKLA-VGEITQPFFSDAGVHILALFDRQGAEPVIVTQY 291 Query: 368 KKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 K I + E+ ++ L E + G S I++ Sbjct: 292 KVRHILVKPTDLFTEEEAQKKINELREKIIQGASFATIAQEY 333 >gi|221135224|ref|ZP_03561527.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp. HTCC2999] Length = 431 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 40/362 (11%), Positives = 104/362 (28%), Gaps = 65/362 (17%) Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 N L + ++ L+ Q E +G++ ++ IA D Sbjct: 57 NQSLPSDRALRTQAIERLILDNLQMQMAERMGIQVSDPQLEQTIANIAKNQNST----MD 112 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN-RSVD 193 + +A+ G++ Y + K L +V + + + E Sbjct: 113 QLRAGIAQAGLDYDSYRETVRKELITGEVRRANVRRRIYITPQEISSLVALIEEQGNEQA 172 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA----PEYKRISYILFD----------- 238 L + + +P++A +T E+ + ++ +I+ Sbjct: 173 EYRLGHILIGFPPEPTDADITSARERAEKVLNLLNSGSDFAKIAIASSSGPKALDGGDMG 232 Query: 239 -------VHEKEKKIEISNDE-------------LQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++ + + E + E ++ Sbjct: 233 WLNINSMPTLFAEVVQGKEADELIGPIRSGAGFHILKIQETRGIEVAKLEEINARHILVK 292 Query: 279 -----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSL 325 ++++ + Q L+ F LA+ + G F+ + + Sbjct: 293 PSIILSEQKVETMLQEFKAQVLEGTADFADLAKAHSEDPGSAVKGGELGFADPSLYVPAF 352 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 D++ L K + + I G+ + + + + DI ++ + KA + + Sbjct: 353 KDALVKLEKD-EISEPIRSVHGWHLIQLIDRR----------VDDITDRKKQDKAYQLIF 401 Query: 386 ED 387 Sbjct: 402 NR 403 Score = 62.3 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 39/322 (12%), Positives = 99/322 (30%), Gaps = 44/322 (13%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277 D+YR K + ++I I+ E+ + +E+ + ++ Sbjct: 126 DSYRETVRKELITGEVRRANVRRRIYITPQEISSLVALIEEQGNEQAEYRLGHILIGFPP 185 Query: 278 --------PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLA 326 ++ A++ L G F ++A K+L +G + +P +L Sbjct: 186 EPTDADITSARERAEKVLNLLNSGSDFAKIAIASSSGPKALDGGDMGWLNINSMP--TLF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-------VKKDIANQMRITK 379 + + + I G+ I + + +E VK I + K Sbjct: 244 AEVVQGKEADELIGPIRSGAGFHILKIQETRGIEVAKLEEINARHILVKPSII--LSEQK 301 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 ++E ++ E A + + + ++ + FA +P + Sbjct: 302 VETMLQEFKAQVLEGTADFADLAKAHSEDPGSAVKGGELGFA------DPSLYVPAFKDA 355 Query: 440 LFRVFGKDDPLSKDHT-----VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 L ++ + + L D ++ + + + ++ + + Sbjct: 356 LVKLEKDEISEPIRSVHGWHLIQLIDR-----RVDDITDRKKQ--DKAYQLIFNRKFAEE 408 Query: 495 TAEEVSSKANQLVLEYSKEGKN 516 T + + +E +G N Sbjct: 409 TDAWLREMREEAFIEVLDDGSN 430 >gi|221210892|ref|ZP_03583872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD1] gi|221169848|gb|EEE02315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans CGD1] Length = 306 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 16/235 (6%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 V G+ + +D+A R + + A A L Q ++ A E Sbjct: 65 VNGVPITQAQIDEAVRVSKAPDTPALRTALKNQLIARELFRQAALKQHYDTKPQVVAAVE 124 Query: 229 YKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 + ++ + ++ K + +++ +++A Y+ E + + + A + Sbjct: 125 QAKTLAMTQAYLSDQVKPVPVTDADVKARYDAIVATLGENEYKP-SVIAVNDADTAKQII 183 Query: 288 QSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKG 336 LKKG+ F +LA++ K + +L S + + LA+++ L + G Sbjct: 184 ARLKKGEDFAKLAQQFSKGPAAAQGGALNWISFKTPIEAGHTQNWPQPLAEALVKLPQGG 243 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RITKASEKVKEDY 388 + Y I + +P+ +F + K + Q+ + KA+ +V D Sbjct: 244 LTREPVQVGDAYWIVRADDKRPTQVPTFDQAKDTLRQQLEQVAMEKATAQVVADL 298 >gi|320162050|ref|YP_004175275.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1] gi|319995904|dbj|BAJ64675.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1] Length = 303 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 79/262 (30%), Gaps = 42/262 (16%) Query: 135 DVFVSRLAREGIN--EKEYIDHYTKMLSRTDVVGM--FVGGMRPSNLLLDQAKRFYFENR 190 A+ G+ +E L ++ F G + L++ E R Sbjct: 75 KQLQEAQAQMGLTSTPEEQRRMVLDDLIAATLLAQAAFKEGFTLDDAALEEQIAALAEQR 134 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250 + N + S +R+ + ++ ++ Sbjct: 135 GGMSALQNWMTRMGYDEVS--------------FRSALRRSLAAAWMR-DTIAAQVP--- 176 Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310 E Q++ + A + ++ G F LA + Sbjct: 177 --------------ERAEQVHARQILLMTPETAQQVLNQIRAGANFATLAFGYDLTT-GG 221 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---- 366 LG F + Y+ ++ ++ F+L + G+ + +I GY I V + +S Sbjct: 222 DLGWFPRGYLTQPAVEEAAFAL-QPGEVSEIIQTELGYHILQVLERETDRLLSPDARLTL 280 Query: 367 VKKDIANQMRITKASEKVKEDY 388 +K + ++ + +++E Sbjct: 281 QRKALEAWLQQARTQAQIEERL 302 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 11/130 (8%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V+ V + VP + + S K +L ++G E + +LD+L++ L Q Sbjct: 57 VLVVNGEGVPLAEYEASLK-QLQEAQAQMGLTSTPEEQ-----RRMVLDDLIAATLLAQA 110 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 G D + +IA + S + + R G +E + + L+ Sbjct: 111 AFKEGFTLDDAALEEQIA---ALAEQRGGMS--ALQNWMTRMGYDEVSFRSALRRSLAAA 165 Query: 163 DVVGMFVGGM 172 + + Sbjct: 166 WMRDTIAAQV 175 >gi|187733861|ref|YP_001878866.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii CDC 3083-94] gi|187430853|gb|ACD10127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii CDC 3083-94] Length = 428 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232 ++ + +N + + L++ +P +P++ + + + + + + Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARAIVDQVRNGA 210 Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268 + + + ++ EL + + + Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270 Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305 ++ ++A ++ +K GK F A+E + Sbjct: 271 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330 Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + G ++ I D + D++ L KG + +H SFG+ + + + + + Sbjct: 331 DPDSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 + K + K SE+ + Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A ++ G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQVRNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPDSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|60680538|ref|YP_210682.1| hypothetical protein BF0994 [Bacteroides fragilis NCTC 9343] gi|60491972|emb|CAH06733.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 712 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 77/591 (13%), Positives = 174/591 (29%), Gaps = 84/591 (14%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 L+ IR S+ + I + + F I G + + S V V + + + N + Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119 + +I G ++ ++ + ++ + V+ +++ + +G+ + I Sbjct: 61 EYTEVIKFSSGMSSLNDE-QTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119 Query: 120 -----ARSPLFHGK-DNKFSHDVFVSRLAR---EGIN--EKEYIDHYTKMLSRTDVVGMF 168 + F F D+ LA +Y+++Y M + Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGM---HKLWSFV 176 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + S L ++ + +A F+ + Sbjct: 177 EKTLIQSRLAEKYQ------------ALVTKALFSNPVEAQDA-----FDARVN------ 213 Query: 229 YKRISYILFDVHEKEKK-IEISNDELQAEYEKNKEKYFS-PEIRTVEQLVFPNQKEADEA 286 + I + EL+ Y K KE++ E R ++ + A++ Sbjct: 214 QSDVLLAAVPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVIASAEDR 273 Query: 287 FQSLKKGKKFI-QLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSL---AKKGDF 338 ++ + QLA G + I Y+ + + + A G Sbjct: 274 AAIQQEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKKAFPSDVVARMDSASIGQV 333 Query: 339 TPVIHGSFGYVI--AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + I V + + V+ A K + + Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAA----DSVQFRQIQVYTEDAAKTKA--LADSIYTAIK 387 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G ++++ + A + L F + +++ V Sbjct: 388 GGADFTALAKKYG-------QTGESNWISSANYENAQVDGDNLKFISTINNLGVNELSNV 440 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 AL G+ + +Q+ + +D V + V+ ++E +KA ++ Sbjct: 441 ALGQGNII-LQVTDKKAVKD------KYKVAVIKRAVEFSKETYNKAYNEFSQFIAANPT 493 Query: 517 FRDIGKNL---GASLLTTNQINRMDNENKFFGYDGISQ----VFSGPVEMV 560 + N G LL N + +E+ G G + F+ V Sbjct: 494 VDKVAANAEESGYKLLERNDL--YSSEHGIGGIRGTKEALKWAFAAKPGEV 542 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 51/366 (13%), Positives = 112/366 (30%), Gaps = 22/366 (6%) Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLG 313 K + + Q+ + AD + ++K G F LA++ G++ + IS Sbjct: 352 SKVAAADSVQFRQIQVYTEDAAKTKALADSIYTAIKGGADFTALAKKYGQTGESNWISSA 411 Query: 314 SFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 ++ + ++ +I +L + + V G G +I V++ K V I Sbjct: 412 NYENAQVDGDNLKFISTINNLG-VNELSNVALGQ-GNIILQVTDKKAVKDKYKVAV---I 466 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + +K E + Y +F+A ++D+++ + L + G + Sbjct: 467 KRAVEFSK--ETYNKAYNEFSQFIAANPTVDKVAANAEESGYKLLERNDLYSSEHG--IG 522 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 I ++ L F + V + I R L +V ++ + Sbjct: 523 GIRGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLAQVQDQLRAEII 582 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551 K AE++ + + + + + S+ + Sbjct: 583 RDKKAEKIMADMKAANATTIAQ---YTSMANAVSDSVKHVTFAAPAYVAALRSSEPLVGA 639 Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611 S PI+ V +V + + M+ L + L Sbjct: 640 YASVSDINKLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLY 699 Query: 612 SQYSVT 617 + V Sbjct: 700 LKGDVK 705 >gi|325526358|gb|EGD03958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. TJI49] Length = 287 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297 S+ E+Q Y++N+ + +P V Q+ AD A S + F Sbjct: 113 SDAEIQTVYDQNRAAFTAPRALHVAQIYIAVPPNADAATVDKARKQAADLASRARNGDFA 172 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ + + + G F E + ++ + +L K G + I G+ + + Sbjct: 173 ALAKANSQDKASAANGGDMGFVPEPMLVPAVRQAADAL-KPGQVSGPIQTPTGFHVVKLI 231 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +++ + +VK+ + +R + + + +L Sbjct: 232 DVRAAAPRPLADVKERVRAMLRAQRTQQGAQAYLAKL 268 Score = 43.4 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 5/127 (3%) Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A + ++ LA + + K S D G E +P Q Sbjct: 147 ADAATVDKARKQAADLASRARNGDFAALAKANSQDKASAANGGDMGFVPEPMLVPAVRQA 206 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + P + P G + V++ + A R L +V V+ + +T + Sbjct: 207 ADAL----KPGQVSGPIQTPTG-FHVVKLIDVRAAAPRPLADVKERVRAMLRAQRTQQGA 261 Query: 500 SSKANQL 506 + +L Sbjct: 262 QAYLAKL 268 >gi|212213438|ref|YP_002304374.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212] gi|212011848|gb|ACJ19229.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212] Length = 321 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 49/352 (13%), Positives = 106/352 (30%), Gaps = 80/352 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S ++ Q+ KK+LD L+ Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQR-----QISLPDQKTFKKKVLDQLIYQKLQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + ++ + + +AR + N S +L +EGI+ KE+ K L Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + + + + + + ++ Sbjct: 149 IISKLQHQ---------------------------------ALQDTISINKSDIAAFQKQ 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + EY I+ IL + + +I++ Sbjct: 176 HAGQIASTEY-HIATILIPLPASATQAQINHA---------------------------- 206 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 + +A + L+KG F + LG S + +P V ++ + K + T Sbjct: 207 KGKAALVLKQLQKGSSFETAMKMH---PGSADLGWRSAKELPQV-FVKTVLKM-KPNEVT 261 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I G+ I + + + TVS + I + K + +++ +L Sbjct: 262 GPIQAPNGFHIIKLLDKEAKNTVS----DQQIQRIVYQQKVEKALQKWLTQL 309 >gi|291278662|ref|YP_003495497.1| hypothetical protein DEFDS_0230 [Deferribacter desulfuricans SSM1] gi|290753364|dbj|BAI79741.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 329 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 6/166 (3%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 EK I +S DE++ +Y K + S V +V N K+A A ++L +GK F ++A Sbjct: 155 IEKNITVSEDEVKNKYNKIDKTKKSIVKYHVLHIVTANYKDALNARRALLRGKSFKEVAL 214 Query: 302 EQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + LG + +P + I L K +PV +GY I V + K Sbjct: 215 KYSVGPEKDQGGDLGYIVLDDMP--VIFQKIKRLRIK-RISPVYKSDYGYHIFQVLDKKK 271 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 V ++ +K + ++ K + + + + L++ + ++D + Sbjct: 272 EVEVGYEVLKPRLYQEIFAEKVEKFINDYVEVLKKNAKITINIDNL 317 >gi|317402408|gb|EFV82980.1| chaperone surA [Achromobacter xylosoxidans C54] Length = 517 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 69/512 (13%), Positives = 151/512 (29%), Gaps = 59/512 (11%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + ++ ++ G + + + L ++L L+ Sbjct: 53 DGIAAVVDKDVITLRELRDASQRIAGELKAR-----GIQVPDDKTLQHQVLQRLIMERVQ 107 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +G+ D +V IA NK + + + G+N Y + Sbjct: 108 RHEADRLGIRVDDAQVDQAIATIAG----RNKITVAQLRQEIEKSGVNWDSYRKSLKDEI 163 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + S+ +D + R+ + + P Sbjct: 164 RSDRLRQRAVDSNIVISDAEVDAF--LKDQRRNPAFAAAPQQAQPQPQPE---------- 211 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 APE + + + SPE + Sbjct: 212 ------AAPEQAAAPAGPMLYAVAQILVRVPEG-------------SSPEQ------LAA 246 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+A++ +K+G F LA +L +G + PD+ A +I +L +K Sbjct: 247 LRKKAEDLLARVKRGDDFASLAAASSDGPEALQGGVMGVRPLDGWPDL-FAKAIANL-QK 304 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + ++ G+ I V + + + + + + + + +E Sbjct: 305 GQISGLLQSGNGFHILKVMDRGTAQPAPSRTARAPVPTPAPQPRPQPQAQAPQGPVEVMQ 364 Query: 396 ALG-----TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + +S + ++ D K ++A Y + G L Sbjct: 365 THARHILIKTSTVMSDEQARQRLEQVRQRLVAGDAKFDDMARQ-YSQDATAPQGGDLGWL 423 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + TV + + ++ E L V++ + T + KA Q + E Sbjct: 424 NPGETVPPFEAAMNALKPGEISQPIQTPFGWHLIQVEERRQHDATDDLARMKARQTLFER 483 Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542 + F D L A N++ + D N+ Sbjct: 484 -RAQPAFEDWLDQLRAQAYIDNRLEKQDRINQ 514 >gi|320179614|gb|EFW54563.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii ATCC 9905] Length = 428 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGKK-FIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTAFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.0 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--AFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|255066985|ref|ZP_05318840.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256] gi|255048810|gb|EET44274.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256] Length = 331 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 89/263 (33%), Gaps = 32/263 (12%) Query: 157 KMLSRTDVVGMFVGG----MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 +++++ + + + + D+ ++ +++ I ++A Sbjct: 64 EVITQRQLAHAIAEARQHLPKGTQISEDELRQQVLAQLVNQSLIIQAGKRRNIQA-TDAE 122 Query: 213 LTQWFEK-----YKDNYRAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + + E I + +S+ E+ + E+ +++ + Sbjct: 123 IDAVIAQTPSLKNPSAQTRREIADTIIMEKVRQQAVMQNSRVSDAEVNSFIERARQQGVA 182 Query: 267 -PE-----IRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAEEQ---GKSLS 308 PE + + ++ + + + + G F LA + G + S Sbjct: 183 LPEGEPMRQYSAQHILIKADNDNAAAGAESTIRKIYAQARSGADFAGLARQYSQDGSANS 242 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 LG F+ + +++ L K G +P + FG+ I +++++ + T + + Sbjct: 243 GGDLGWFADGMMV-APFEEAVHKL-KPGQISPPVRTQFGWHIIKLNDVRDAGTPE-ERQR 299 Query: 369 KDIANQMRITKASEKVKEDYKRL 391 + M KA + + L Sbjct: 300 NAVRQYMSGQKAQQATANLLRDL 322 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 10/98 (10%), Positives = 35/98 (35%), Gaps = 7/98 (7%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + ++ + + + G ++ + L +++L LV+ + Sbjct: 54 SDGIAAIADNEVITQRQLAHAIAEARQHLPK--GTQISEDE-----LRQQVLAQLVNQSL 106 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + Q + ++A + IA++P + ++ Sbjct: 107 IIQAGKRRNIQATDAEIDAVIAQTPSLKNPSAQTRREI 144 >gi|207727966|ref|YP_002256360.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia solanacearum MolK2] gi|206591209|emb|CAQ56821.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia solanacearum MolK2] Length = 473 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 47/408 (11%), Positives = 113/408 (27%), Gaps = 66/408 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + + RA +G ++L+ L+ Sbjct: 66 DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 120 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+LA+ G+ +Y + + + Sbjct: 121 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDKYREDLRQEI 176 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + V ++ + +D + +V I++ + + A Sbjct: 177 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 236 Query: 212 ---------------VLTQWFEKY--------------KDNYRAPEYKRISYILFDVHEK 242 + + R P + + + Sbjct: 237 RGKAENLLKQAQGGADFAKLARDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 296 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292 ++ S +K + V ++ AD+A + L Sbjct: 297 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 356 Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G F A + S LG S + ++ +L K G+ + + Sbjct: 357 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 414 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 415 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 461 >gi|308066877|ref|YP_003868482.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa E681] gi|305856156|gb|ADM67944.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa E681] Length = 372 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 39/325 (12%), Positives = 98/325 (30%), Gaps = 46/325 (14%) Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAK 183 K + + F ++ EY R +V + + + +Q Sbjct: 53 KGGTITENEFNQEISMMKFLYPEYEAALASDQVREQIVKQEVVYKLLAAKADDKAKEQGA 112 Query: 184 RFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E + + + + + +F Sbjct: 113 KQGNEQLEQYKKSVGDDKFKTFLSDKKLTEQGVKDYF-----------------TRVMTV 155 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288 + ++++D+L+ E+EKNK+++ + +R V + F + K A E Sbjct: 156 INSETNKVTDDQLKQEFEKNKDQFTTATVRHVL-INFQDPKTKKQRKKEDALKLAKEVKA 214 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGS 345 L G F +A++ + S G + + ++ + Sbjct: 215 KLDGGADFATIAKKYSEDPGSASNGGLYENASVAQWVPAFKEAA-ETQPINKIGEPVETE 273 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +GY + V + +F ++K + + ++ A E ++ + L L ++ ++ Sbjct: 274 YGYHVIKVESRNE---PTFDKLKDNEKSALKNKLAGESIQNFTENDLAKLDLKINLPKVP 330 Query: 406 RREKIVSID--LPLVDFAGKDVKGK 428 ++ G G Sbjct: 331 ATQEKSGATSGAGSTTTPGATTNGT 355 >gi|309807374|ref|ZP_07701339.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 01V1-a] gi|309810061|ref|ZP_07703907.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN 2503V10-D] gi|312872215|ref|ZP_07732288.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 2062A-h1] gi|312873587|ref|ZP_07733634.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 2052A-d] gi|308169383|gb|EFO71436.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 01V1-a] gi|308169560|gb|EFO71607.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN 2503V10-D] gi|311090840|gb|EFQ49237.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 2052A-d] gi|311092299|gb|EFQ50670.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF 2062A-h1] Length = 297 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%) Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + N PE + I L + I+ + + +++ + K V+ ++ Sbjct: 99 QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333 + A + + L KG F LA++ + + D ++ F L Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + FGY I + IK SFQ K +I ++ A ++ Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIITRIYQKMAQDQ 260 Score = 41.1 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 +L F AL + S TV + K+ F N + Sbjct: 11 LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + + IL N++ TL Q G + +V + K F Sbjct: 47 VKKSPAGQAILANMIINRTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 L + G+ + Y + L + + +A + Y V +I++ Sbjct: 97 VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153 Query: 200 RHVPAIA 206 Sbjct: 154 EDTAKKV 160 Score = 41.1 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%) Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533 KK WK V+ + K A +++ E K G +F+D+ K T+ Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188 Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590 I D+ + D F P++ Y + K + + G Q K + Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248 Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 I+ + Q M +D ++ SV+ + + +V + DN ++ L Sbjct: 249 ITRIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287 >gi|304382090|ref|ZP_07364601.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973] gi|304336688|gb|EFM02913.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973] Length = 473 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 20/181 (11%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKKGKKFI 297 E + YE+ + + + + + A D + +L+ G F Sbjct: 107 EAEARKIYEQRRAQIGDKGLIHPAHIFIRVPQNAPKEALDRAKQRIDSIYAALRGGADFA 166 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LAE+ + G + P +L D + + L K G+ P + GY I + Sbjct: 167 TLAEKYSEDPMSARQGGALPWFAPGETLEDFEKTAYRL-KTGETAPPMLSFAGYHIIRML 225 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 + K F E+K DI ++ EK+ + +RL+E + ++ + + Sbjct: 226 DRK--QMEPFDELKADIIRALKTRNIREKIAD--ERLKEMAETSKTGKTEAQIMDEKAAE 281 Query: 415 L 415 L Sbjct: 282 L 282 Score = 44.6 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 10/158 (6%) Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +A ++ K+ + L G ++ + + G+ + Sbjct: 140 APKEALDRAKQRIDSIYAALRGGADFATLAEKYSEDPMSARQGGALPWFAPGETLEDFEK 199 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 L + L Y +++ + + +E+ D+ + KT Sbjct: 200 TAYRLKT--------GETAPPMLSFAGYHIIRMLDRK--QMEPFDELKADIIRALKTRNI 249 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533 E+++ + + + E SK GK I A L Q Sbjct: 250 REKIADERLKEMAETSKTGKTEAQIMDEKAAELSEKEQ 287 >gi|269986643|gb|EEZ92924.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 91 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + ++ Q A + + KG+ F +LAEE S LG F + + Sbjct: 3 DKIRCAHILVKKQSLAYSILERINKGESFSKLAEEFSIDSSRRRGGELGYFGRGIMVK-E 61 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + FSL KG + I FGY I Sbjct: 62 FEKAAFSL-NKGQISQPIKTQFGYHIIK 88 >gi|83720338|ref|YP_441133.1| survival protein SurA [Burkholderia thailandensis E264] gi|257140205|ref|ZP_05588467.1| survival protein SurA, putative [Burkholderia thailandensis E264] gi|122070640|sp|Q2T116|SURA_BURTA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|83654163|gb|ABC38226.1| survival protein SurA, putative [Burkholderia thailandensis E264] Length = 448 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAPQADIDAA 209 Query: 212 VLTQWF-----------------------EKYKDN---YRAPEYKRISYILFDVHEKEKK 245 + K ++AP + + + Sbjct: 210 QKKAEGLLQQALASGTNFERLAKSQSEADDAKKGGDLGFKAPSSLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|325913389|ref|ZP_08175756.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII 60-B] gi|329919662|ref|ZP_08276640.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN 1401G] gi|325477315|gb|EGC80460.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII 60-B] gi|328937314|gb|EGG33738.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN 1401G] Length = 297 Score = 81.2 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%) Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + N PE + I L + I+ + + +++ + K V+ ++ Sbjct: 99 QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 152 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333 + A + + L KG F LA++ + + D ++ F L Sbjct: 153 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 212 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + FGY I + IK SFQ K +I ++ A ++ Sbjct: 213 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIITRIYQKMAQDQ 260 Score = 41.1 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%) Query: 483 LTDVKKDWKT----VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-- 533 KK WK V+ + K A +++ E K G +F+D+ K T+ Sbjct: 130 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGK-GASFKDLAKKYSTDTGTSKNAG 188 Query: 534 -INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKF 590 I D+ + D F P++ Y + K + + G Q K + Sbjct: 189 KIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEI 248 Query: 591 ISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 I+ + Q M +D ++ SV+ + + +V + DN ++ L Sbjct: 249 ITRIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 287 Score = 40.7 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 37/187 (19%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 +L F AL + S TV + K+ F N + Sbjct: 11 LLIAAFSGV----ALTATGCSKTVANYKGGKITQEDFYN--------------------K 46 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 + + IL N++ TL Q G + +V + K F Sbjct: 47 VKKSPAGQAILANMIINKTLQQQ---YGSQVSKKKVNTA-------YDNARKQYGARFEM 96 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 L + G+ + Y + L + + +A + Y V +I++ Sbjct: 97 VLQQNGMTPEAYKESIQTNLL---LQAALKDIKPITKAQEKKAWKEYQPKVRVQHILVEK 153 Query: 200 RHVPAIA 206 Sbjct: 154 EDTAKKV 160 >gi|313143878|ref|ZP_07806071.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818] gi|313128909|gb|EFR46526.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818] Length = 296 Score = 81.2 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 13/159 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE 301 +++ +++ Y+ N+ + + E ++ + EA + + L K KFI+LA Sbjct: 133 SVNDAQIKEIYKNNEGMFINQE-MHARHILVKTESEAKDIIKELDKAGKKAESKFIELAN 191 Query: 302 EQGKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + LG+F + + A++ +L + FGY + ++ Sbjct: 192 AKSTDPASKQAKNGGDLGTFQRN-VMHPDFANAASNLKPGTYTQEPVQTPFGYHVIYLIK 250 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + E KK I Q+++ + + + L E Sbjct: 251 KSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQKIQALREK 289 >gi|300692473|ref|YP_003753468.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Ralstonia solanacearum PSI07] gi|299079533|emb|CBJ52211.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Ralstonia solanacearum PSI07] Length = 475 Score = 81.2 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 49/409 (11%), Positives = 111/409 (27%), Gaps = 67/409 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + + RA +G ++L+ L+ Sbjct: 67 DEVVAVVNTDIITRRELLDRADLVERTLQSQNRPM--PARADLLG---EVLEQLILERVQ 121 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+L + G+ +Y + + + Sbjct: 122 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLVQSGLAYDKYREDLRQEI 177 Query: 160 SRTDVVGMFVGGMRP------SNLLLDQ---AKRFYFENRSVDYIVLNNRHVPAIADPSN 210 + V N L Q A + +V I++ + + Sbjct: 178 LLARLRDREVDSKVQVFDGEIDNFLAQQGGAAASGGSQEYNVAQILVPVAEDASAEQKAA 237 Query: 211 A---------------VLTQWFEKYKDN--------------YRAPEYKRISYILFDVHE 241 A + + R P + + + Sbjct: 238 ARGKAEGLLKQVQGGADFAKLARDHSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKPGQ 297 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSP-----EIRTVEQLVFPNQKE--ADEAFQSLKK-- 292 ++ S +K + V ++ AD+A + L Sbjct: 298 VVGQVIESPAGFHVLKLVDKRVQGTAITAKVAQTQVRHILIKTGPTMPADDARRQLAGLR 357 Query: 293 -----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 G F A + S LG S + ++ +L K G+ + + Sbjct: 358 DRIVHGYDFGDAARRYSQDASASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQS 415 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 416 QFGVHLIQVEGRREAEV-PVDRQRDYARSAIREQKIQAAYEDWLRQLRD 463 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 113/369 (30%), Gaps = 45/369 (12%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L R G+R S+ +D+A + ++ L ++ V + ++ Sbjct: 117 LERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVSQLKSKLVQSGLA---------YD 167 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP--EIRTVEQLV 276 KY+++ R I E + K+++ + E+ + S + V Q++ Sbjct: 168 KYREDLRQ----EILLARLRDREVDSKVQVFDGEIDNFLAQQGGAAASGGSQEYNVAQIL 223 Query: 277 FPNQKEADE------------AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIP 321 P ++A + ++ G F +LA + + LG +P Sbjct: 224 VPVAEDASAEQKAAARGKAEGLLKQVQGGADFAKLARDHSGAPEAAQGGELGLRPIGRLP 283 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH-VSNIKPSFTVSFQEVKKDIANQMRI--- 377 A+++ L VI G+ + V ++ + + + + + Sbjct: 284 -AQFANAVVDLKPGQVVGQVIESPAGFHVLKLVDKRVQGTAITAKVAQTQVRHILIKTGP 342 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 T ++ + L + + G + +RR G G+ V Sbjct: 343 TMPADDARRQLAGLRDRIVHGYDFGDAARRYS-QDASASAGGELGWVSPGQLVPEFEQAM 401 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 LL P V G +Q++ A ++ + + K Sbjct: 402 NLLK-------PGEVSQPVQSQFG-VHLIQVEGRREAEV-PVDRQRDYARSAIREQKIQA 452 Query: 498 EVSSKANQL 506 QL Sbjct: 453 AYEDWLRQL 461 >gi|241765841|ref|ZP_04763778.1| SurA domain protein [Acidovorax delafieldii 2AN] gi|241364240|gb|EER59412.1| SurA domain protein [Acidovorax delafieldii 2AN] Length = 466 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 57/403 (14%), Positives = 117/403 (29%), Gaps = 67/403 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + V + + ++Q+ G + L +++L+ L+ Q Sbjct: 64 VAVVNSEPVTNNEVRARAVRVEQQMAQQ-GSPLPPRDL----LAREVLERLIVEKIQLQL 118 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + G+ D V K N+ S D RLA +GI+++ + + L Sbjct: 119 AREGGIRVDDYAVGQAEESV----AKQNRVSVDEMHRRLAADGISKERFREELRNQLLLL 174 Query: 163 DVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA--DPSNAVLTQW--- 216 + +R S+L +DQ R + +N H+ + + + + + Sbjct: 175 RLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVVPENATPQQVEERRVR 234 Query: 217 -------------FEKYKDNY-------------------RAPEYKRISYILFDVHEKEK 244 F + R PE + + Sbjct: 235 AQQAADKVRAGEDFAAVAREFSDAAEAKTSGGLLGLRPADRYPELFVSATAQLPLGGIAG 294 Query: 245 KIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVF----------PNQKEADEAFQSLK 291 + S +K P ++ + AD + L Sbjct: 295 PVR-SPAGFHVLKLVDKTSAGVPTVAIQSHARHILLRTGPQLTESAAAARLADYRRRVLA 353 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F +LA E + S LG + ++ +L K GD + + FG Sbjct: 354 GQADFAELAREHSQDGSAKQGGDLGWSNPGRYV-PEFEQAMNAL-KPGDVSEPLVSRFGV 411 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + + ++ + + +R K E + L Sbjct: 412 HLIQLLERRETKLTQREQ-RDMARDTVREKKVEEAFANWMQEL 453 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 38/309 (12%), Positives = 99/309 (32%), Gaps = 38/309 (12%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPN 279 K+ +R ++ + + + ++ +S+ ++ + + + + + ++ Sbjct: 160 KERFREELRNQLLLLRLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVV 219 Query: 280 QK------------EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSL 325 + A +A ++ G+ F +A E + + G D L Sbjct: 220 PENATPQQVEERRVRAQQAADKVRAGEDFAAVAREFSDAAEAKTSGGLLGLRPADRYPEL 279 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ---EVKKDIAN---QMRITK 379 S + G + G+ + + + + + + + Q+ + Sbjct: 280 FVSATAQLPLGGIAGPVRSPAGFHVLKLVDKTSAGVPTVAIQSHARHILLRTGPQLTESA 339 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A+ ++ + +R+ LA E++R G +P EQ Sbjct: 340 AAARLADYRRRV---LAGQADFAELAREHSQDG----SAKQGGDLGWSNPGRYVPEFEQA 392 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAE 497 + + K V+ P S V + + + R+ KL E + + K E Sbjct: 393 MNAL--------KPGDVSEPLVSRFGVHLIQLLERRETKLTQREQRDMARDTVREKKVEE 444 Query: 498 EVSSKANQL 506 ++ +L Sbjct: 445 AFANWMQEL 453 >gi|33594222|ref|NP_881866.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] gi|81713229|sp|Q7VU12|SURA_BORPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|33564297|emb|CAE43595.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis Tohama I] gi|332383636|gb|AEE68483.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis CS] Length = 519 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 101/321 (31%), Gaps = 54/321 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + + K + ++ G V ER L K++L L+ Sbjct: 55 DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDER----TLQKQVLQRLIMERLE 109 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ D +V I NK + + + + G+ ++Y + Sbjct: 110 RQEADRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-E 218 + R+VD A S+A + + + Sbjct: 166 RMDRLR-----------------------QRAVD----------ANIIISDAEVDAFLKD 192 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++ A + + ++ + A+ + SP+ V Sbjct: 193 QERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSSPDQ------VAA 246 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+A+ KKG F LA +L +G+ + PD+ + SL+ Sbjct: 247 LRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDL-FVKAAGSLS-A 304 Query: 336 GDFTPVIHGSFGYVIAHVSNI 356 G + ++ G+ I V + Sbjct: 305 GQVSGLVQSGNGFHILKVVDR 325 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 16/147 (10%) Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGK-KFIQLAEEQGKS---LSDISLGSF 315 ++ +A ++ + L+ G KF +A + + LG Sbjct: 366 QTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWV 425 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + ++ +L + + +P + FG+ + V + VS + + + Sbjct: 426 NPGDTV-PPFEAAMNAL-QPNEISPPMLSPFGWHLIQVLERRE-HDVSDEVQRMRARQLL 482 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402 +A ++ ++L + ++ Sbjct: 483 FERRAVPAFEDWLEQLRSQAFIDNRLE 509 >gi|329925504|ref|ZP_08280378.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5] gi|328939787|gb|EGG36127.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5] Length = 361 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 108/311 (34%), Gaps = 31/311 (9%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I EKE+ + + F+ L Q + + Y +++ A Sbjct: 52 ITEKEFDLEQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYL-----YAKADDKAKEAA 106 Query: 206 ADPSNAVLTQW--------FEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQAE 256 ++ +L Q F+ ++ + E +Y+L + E +K +++ ++++ E Sbjct: 107 EKQTDDLLKQQKAGMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKE 166 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ NK+ Y + +R V + K A E L KG+ F LA+E + Sbjct: 167 FDANKKDYTNISVRHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQD 226 Query: 307 LSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 G + + +L + + + +GY + V + Sbjct: 227 PGSKDSGGLYENKPAGSWVPQFKEKALTL-ELNKISDPVETDYGYHVMKVEKREEVTYDK 285 Query: 364 F-QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 + K+ I +++ K ++ + L E + L S E + + + D Sbjct: 286 LPADQKEGIRSELASAKIDNFMQNELNNLIESMNLPKS--ENADKPAEGTGDQKTDGTTD 343 Query: 423 KDVKGKEVAAI 433 K +G + Sbjct: 344 KPAEGDQTPDA 354 >gi|254448730|ref|ZP_05062188.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015] gi|198261738|gb|EDY86025.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015] Length = 306 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 11/170 (6%) Query: 247 EISNDELQAEYEKNKEKYFSPE----IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 ++S+++L+AEY++ + ++ +++EA + L G F LAEE Sbjct: 123 DVSDEDLRAEYDEQVKMMEEASGGGSEFNASHILVESEEEAKALIKQLDDGADFATLAEE 182 Query: 303 QG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA---HVSNI 356 + S SLG + + + + A ++ L + FG+ + Sbjct: 183 NSVGPSASSGGSLGWATADTYVE-AFATALEQLEDGSYTAAPVETQFGWHVILRSESRES 241 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + +F VK + + + ++ + + S E S Sbjct: 242 QAPEAPAFDMVKSQLEKVVMQKRMQSYMENLRNKANVVIVGQDSDSEASS 291 >gi|288818385|ref|YP_003432733.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6] gi|288787785|dbj|BAI69532.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6] gi|308751978|gb|ADO45461.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6] Length = 276 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 11/205 (5%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR--ISYILFD---VHEKEKKI 246 V +++ + + ++ K N E R + + + K I Sbjct: 65 VRSLIIQQEAKKMGINVKESEFKEYITKNIGNVPLSETVRELVKTEILTNKILDRIAKDI 124 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 ++S+ E+ A Y N + P V +++ + A+E + L KG + ++ Sbjct: 125 DVSDREITAYYYLNLRDFKLPAQVLVRRVLVEDLDTANEVYYRLSKGAESLEGLR----G 180 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 + + +S + +P+ + + G + I GY+I V + + +S +E Sbjct: 181 VKEGDPMWYSIQTLPE--IVKQQLYPYEVGKTSKPIDTGSGYLILKVIDRRGDGILSLEE 238 Query: 367 VKKDIANQMRITKASEKVKEDYKRL 391 K + ++ K E K+ ++++ Sbjct: 239 AKPVVKEKLLKEKRQEVFKKWFQKV 263 >gi|307565549|ref|ZP_07628029.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345708|gb|EFN91065.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 715 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 86/276 (31%), Gaps = 38/276 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L IR S+ + I + + + FL + + S SG S V + +K+ F Sbjct: 4 LGKIR--SKGTLLMIVIGLALLGFL---VEEGARSCSGLKNEQRSQVGEILGEKISNQDF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + I + SE+ + ++ LVS L+ + +GL + Sbjct: 59 QKLIDEYQSAIKLTMQRDNLSEQ-ELNQVKDQVWHQLVSNRVLEADAKKVGLTVTEQEIQ 117 Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRL----AREGINEKEYIDH---------- 154 +A++P + + +F ++ L + N + Sbjct: 118 NVLSDGTNPALAQTPFVNQQTGRFDVNILKQFLDSYNKAKDTNSPQLEQMQSIYNYWLFV 177 Query: 155 ---YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPSN 210 L + + + + A + E + L V A S+ Sbjct: 178 EKNLRSQLLGQKYQSLLASCVLSNKVEAKLAFKDNNEEAQIQLATLPYSSVKDADIKISD 237 Query: 211 AVLTQWFEKYKDNYR-APEYKRISYILFDVHEKEKK 245 L +++ K +R A E + + Y+ + Sbjct: 238 DDLKAKYDELKGMFRQAVESRDVKYVDVQIKASAAD 273 Score = 73.9 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 33/331 (9%) Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ ++ +AD ++L G F+ +A+ G++ + L Sbjct: 353 SKEQLPDSVEFRQIQVVANTPEESKVKADSIQKALAGGADFVTIAKRYGQTGAKAWLTGQ 412 Query: 316 SKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIA 372 E P + + F L+ KG+ + + + G VI V + T S V I Sbjct: 413 QYESAPSIGQDNRTFLLSLLKGEVNAIQNVALTQGNVIVEVLEKRAMTTKSVAAV---IK 469 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + +K + + Y + EF+A T++ ++ + + + G VA Sbjct: 470 KAIDFSKETRGI--AYNKFSEFVAKSTTLADLQKNAGRYGYLVKDLK--GITTAEHYVAG 525 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDW 490 I L +F + + + + R EV +K++ Sbjct: 526 IRGTRDALKWIFEAKQGDISPLFEVGDNDHMLVLVLNGIHEQGYRPWNDAEVKEILKREV 585 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 K AE + +K K K+ + GA + NQI + + Sbjct: 586 MKDKKAEVLMAK--------LKGVKSIAA-AQAKGAKVSIVNQIT-FASPAFIQSVGAVE 635 Query: 551 QVFSGPV-----EMVKCFPIENGLSYVVFKV 576 SG V P++ VF+V Sbjct: 636 PALSGAVAATEQGKFSKKPVKGNAGVYVFQV 666 >gi|189220090|ref|YP_001940730.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum infernorum V4] gi|189186948|gb|ACD84133.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum infernorum V4] Length = 283 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 7/231 (3%) Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 ++ + G + +L + K+ I + + EK K Sbjct: 39 DQLLAIVNGVEIRKSYVLAELKKAGIVKPDSQAIQNALASLVQQEILYQEAMKLEMEKSK 98 Query: 222 DNYRAPEYK-RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + RA E R + V +K + S EL+ Y + + E + + +V P + Sbjct: 99 ELLRAQEEFNRKALTELVVQKKIRSQPPSEGELRLRYSQLLKSLPKEEYK-IRHIVLPTR 157 Query: 281 KEADEAFQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 ++A E + LKKG+ F LA E + + LG +K + + S+ K G Sbjct: 158 RKALEVMERLKKGENFSLLAMESLEKQTADRGGELGWQNKATLVLSAY--SLIQKLKPGQ 215 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 I S G+ + + ++P S++E+K + Q+ + V+E Sbjct: 216 VGGPILSSMGWELIELLAVRPLRVPSYEELKPQLIQQIEQENLKKYVQELI 266 >gi|78046458|ref|YP_362633.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928237|ref|ZP_08189442.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans 91-118] gi|121956510|sp|Q3BX80|SURA_XANC5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|78034888|emb|CAJ22533.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541397|gb|EGD12934.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans 91-118] Length = 463 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 43/408 (10%), Positives = 106/408 (25%), Gaps = 72/408 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + IA + N + D +LA +G+ ++ + Sbjct: 87 VSRADGNGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213 + F + S +D A + + L + + + + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTA--LAQQAATGSQYHLAHILIGLPEGATAEQIATGQK 200 Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN------- 250 +K + ++ A + + + D I + Sbjct: 201 KVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVA 260 Query: 251 --------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAF 287 E++ ++K + ++ + + D Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYHARHILVRIGENQTEAQAKAKIDTIR 318 Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + G F A+E + + LG F + + SL G + Sbjct: 319 ARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVESLT-DGAVSEPFR 376 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + S + + + + K E+ + L Sbjct: 377 TQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423 >gi|33603075|ref|NP_890635.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella bronchiseptica RB50] gi|81714068|sp|Q7WG19|SURA_BORBR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|33568706|emb|CAE34464.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella bronchiseptica RB50] Length = 519 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 101/321 (31%), Gaps = 54/321 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + + K + ++ G V ER L K++L L+ Sbjct: 55 DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDER----TLQKQVLQRLIMERLE 109 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ D +V I NK + + + + G+ ++Y + Sbjct: 110 RQEADRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-E 218 + R+VD A S+A + + + Sbjct: 166 RMDRLR-----------------------QRAVD----------ANIIISDAEVDAFLKD 192 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++ A + + ++ + A+ + SP+ V Sbjct: 193 QERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSSPDQ------VAA 246 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+A+ KKG F LA +L +G+ + PD+ + SL+ Sbjct: 247 LRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDL-FVKAAGSLS-A 304 Query: 336 GDFTPVIHGSFGYVIAHVSNI 356 G + ++ G+ I V + Sbjct: 305 GQVSGLVQSGNGFHILKVVDR 325 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 16/147 (10%) Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGK-KFIQLAEEQGKS---LSDISLGSF 315 ++ +A ++ + L+ G KF +A + + LG Sbjct: 366 QTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWV 425 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + ++ +L + + +P + FG+ + V + VS + + + Sbjct: 426 NPGDTV-PPFEAAMNAL-QPNEISPPVLSPFGWHLIQVLERRE-HDVSDEVQRMRARQLL 482 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402 +A ++ ++L + ++ Sbjct: 483 FERRAVPAFEDWLEQLRSQAFIDNRLE 509 >gi|134293907|ref|YP_001117643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] gi|134137064|gb|ABO58178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia vietnamiensis G4] Length = 321 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297 S+ E+Q+ YE+N+ +P V Q+ AD A + + F Sbjct: 147 SDAEIQSAYEQNRAALTTPRALHVAQIYIAVPSNADAATLEAARKRAADLANRARSGDFA 206 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA + + + G F + + ++ + +L K G + + G+ + + Sbjct: 207 ALARANSQDAASAANGGDLGFVPDSLMLPAVRQAADAL-KPGQVSAPVRTPSGFHVVKLI 265 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +++ + +VK+ + +R + + + L Sbjct: 266 DVRAAAPRPLADVKEQLRTMLRAQRMQQNARTYLANL 302 Score = 43.8 bits (102), Expect = 0.099, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 3/126 (2%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE--QLLFR 442 D LE + +R ++ A G ++ +P + + Sbjct: 180 NADAATLEAARKRAADLANRARSGDFAALARANSQDAASAANGGDLGFVPDSLMLPAVRQ 239 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 P V P G + V++ + A R L +V ++ + + + + Sbjct: 240 AADALKPGQVSAPVRTPSG-FHVVKLIDVRAAAPRPLADVKEQLRTMLRAQRMQQNARTY 298 Query: 503 ANQLVL 508 L Sbjct: 299 LANLAA 304 >gi|325922420|ref|ZP_08184189.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC 19865] gi|325547117|gb|EGD18202.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC 19865] Length = 466 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 48/430 (11%), Positives = 114/430 (26%), Gaps = 68/430 (15%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +L + + ++ A S V V S + + + + + Sbjct: 8 LLASLLVITSTVSPMASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRDNQLP 67 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L +++L+ LV + G+ + IA + N + D Sbjct: 68 PDDV-----LQRQVLERLVLVKLQVGRADSTGIRVSDEELNRAIASI----AQQNGTTVD 118 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENR 190 +LA +G+ ++ + + F + S +D Q + Sbjct: 119 GLRQKLAADGMGYGDFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYH 178 Query: 191 SVDYIVLNNRHVPAIADPSNAV----LTQWFEKYKDNYRAPEYK-----------RISYI 235 +V A + + +K + ++ A + + + Sbjct: 179 LAHILVGLPEGANAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWR 238 Query: 236 LFDVHEKEKKIEISN---------------------DELQAEYEKNKEKYFSPEIRTVEQ 274 D I + E++ ++K + Sbjct: 239 SLDEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKLVT--EYNARH 296 Query: 275 LVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321 ++ + + D + G F A+E + + LG F + Sbjct: 297 ILVRIGDNQTEAQAKAKIDTLRARITGGADFQATAKESSEDTNSRGQGGDLGWFPADAF- 355 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 + LA G + G+ I + + S + + I + K Sbjct: 356 GPDFGKQVEGLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAESQRAQIRETIGRRKLE 413 Query: 382 EKVKEDYKRL 391 E+ + L Sbjct: 414 EEYNRYLQEL 423 >gi|254283287|ref|ZP_04958255.1| chaperone SurA [gamma proteobacterium NOR51-B] gi|219679490|gb|EED35839.1| chaperone SurA [gamma proteobacterium NOR51-B] Length = 435 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 53/407 (13%), Positives = 119/407 (29%), Gaps = 76/407 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S I ++ G + +E L ++ LD L+ + Sbjct: 41 EQIVAIVDDDIILASELRERLDTLKVNIERQ-GAEMPAEDI----LVRETLDRLILESIQ 95 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ ++ + R +N + F L EG + E + K + Sbjct: 96 LQMGERYGIRIPDTQLDEALRRVAS----NNGLTLAQFRGALEAEGRSYAEMRESVRKEM 151 Query: 160 SRTDVV-GMFVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + V G + S+ +D + + + + +P + S A Sbjct: 152 TIQRVQQGNVSRNINISDAEIDNYLETEAGQELTEPQYRVFQALIPVNSTDSEAE----- 206 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------------DELQAEYEKNKEK 263 K+ + + D E + ++ ++ + + Sbjct: 207 RASKEAFVD----SALSAILDGQAFESAVSVTQPYAFQGGDLGWRKLSDIPSMFTAIVPT 262 Query: 264 YFSPE--------------------------IRTVEQLVFP---------NQKEADEAFQ 288 E V ++ ++ A + Q Sbjct: 263 LDRGETGKVESGSGFHLVHVADVRGRERVIAQTKVRHILVKPSEVRTEAETEQLAADLRQ 322 Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 L G F +LA+E + + LG S + ++ + + D P + Sbjct: 323 RLLDGADFAELAKEYSEDIGSAQEGGDLGWTSAGQMV-PEFEQAM-AETEVDDIAPPVRS 380 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FG+ + V+ + + + +AN + K E++ +++ Sbjct: 381 QFGWHVLEVTGRRDKDVSD-EMRRNQVANYLHDAKYQEELDAWLRKI 426 >gi|332095342|gb|EGJ00365.1| chaperone surA [Shigella boydii 5216-82] Length = 428 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 125/388 (32%), Gaps = 69/388 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNTAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-I 232 ++ + +N + + L++ +P +P++ + + + + + + Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE--AESQARAIVDQARNGA 210 Query: 233 SYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE---------------- 268 + + + ++ EL + + + Sbjct: 211 DFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKV 270 Query: 269 -------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGK 305 ++ ++A ++ +K GK F A+E + Sbjct: 271 NDLRGESKNISVTEVHTRHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 330 Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + G ++ I D + D++ L KG + +H SFG+ + + + + + Sbjct: 331 DPGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDK 388 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390 + K + K SE+ + Sbjct: 389 TDAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.6 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHTRHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|207742369|ref|YP_002258761.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia solanacearum IPO1609] gi|206593759|emb|CAQ60686.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia solanacearum IPO1609] Length = 473 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 110/408 (26%), Gaps = 66/408 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + + RA +G ++L+ L+ Sbjct: 66 DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 120 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+LA+ G+ +Y + + + Sbjct: 121 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDKYREDLRQEI 176 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + V ++ + +D + + N + + + Sbjct: 177 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 236 Query: 219 KYKDN------------------------------------YRAPEYKRISYILFDVHEK 242 + K R P + + + Sbjct: 237 RGKAESLLKQAQGGADFAKLARDSSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 296 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292 ++ S +K + V ++ AD+A + L Sbjct: 297 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 356 Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G F A + S LG S + ++ +L K G+ + + Sbjct: 357 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 414 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 415 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 461 >gi|124003471|ref|ZP_01688320.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134] gi|123991040|gb|EAY30492.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134] Length = 693 Score = 81.2 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 68/620 (10%), Positives = 171/620 (27%), Gaps = 91/620 (14%) Query: 17 FLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 + + F++ L + G S TV + ++V + F N ++ G+ Sbjct: 1 MIALAIAAFILTDLFGKMLQGGGPESMTVGHIQGERVSYQGFNNRVSFVEAQYQRQ-GYP 59 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 +N + S + +++ + + E++G+ + + L ++ Sbjct: 60 INDQTRNS--IREQVWGDFIFEKAYQPQFEELGITVTPQEIKEILQGDSLMRDSQSQVIQ 117 Query: 135 DVFVSRLAREG-INEK---------------EYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178 + + G + + + + K + + + Sbjct: 118 QLTRTFKDSTGKYSPQMAGSYWTNIPAPQRNQLREGIRKDRLQKKYTSLLQFSTYITKAE 177 Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 + ++ + V ++A L + + D Y++ E + + Y Sbjct: 178 AKRDYTNKNTKGDFKFLYVPYSSVADSTVKVTDAELEAYMRDHADEYKSQETRSLEYYAL 237 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + + L+ K+ F + F Sbjct: 238 SIDPSPEDST-----------------------KFANLIRQTAKD----FAKAENDSAFA 270 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +++ KE + +++ +L K G ++ Y I +S+ K Sbjct: 271 VINSDDPPNMNFQDPTKLPKE------IWETVPTLTK-GAVVGPLNNKNTYTIYKISDTK 323 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKR---LEEFLALGTSMDEISRREKIVSID 414 + V + K SE+ K L++ L + + Sbjct: 324 ADTANYYANVSNLLIKADSTMKQSEQDSARRKAEGILKKLLDNPGDFENQANTYNTDGTK 383 Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM---------- 464 ++K + + + G D V G ++ Sbjct: 384 GKGGALGWSNLKT-------FVKPFSEAIKGTDKIGVIPKVVKSAYGYHIIKVVHPSTNK 436 Query: 465 WVQIKESIP---ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521 ++ ++E K KT EE+ + A + + Sbjct: 437 LYKVATIKKTLLPGKSTIDEAFKTTDKLVNNSKTLEELRANAAKNPKLIKNTAPKLQPSA 496 Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581 NLG + Q R F + ++F K + + Y++ +T + Sbjct: 497 TNLG-----SYQGAREIIRWAFKDETKVGEIF-------KPVELSDQNVYIIAALTGATE 544 Query: 582 GPVQEKDKFISYLTQMMNKD 601 + LT + ++ Sbjct: 545 KDELSVEANREALTNKVRQE 564 >gi|49085090|gb|AAT51251.1| PA0699 [synthetic construct] Length = 315 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 Score = 38.0 bits (87), Expect = 5.4, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + +A ++ +E Y++ + E++R+ D P G D+ G + A Sbjct: 176 LAEARKRAQELYRQAAD-----GDFAELARKHS----DDPQTARNGGDIGG--LLAQAQL 224 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 + + + + +G + V++ E AR L+EV +++ + + Sbjct: 225 LPAIRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQE 283 Query: 497 EEVSSKANQLV 507 + + + LV Sbjct: 284 QIAKAYLDGLV 294 >gi|300821942|ref|ZP_07102086.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7] gi|300905457|ref|ZP_07123223.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1] gi|300923997|ref|ZP_07139998.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1] gi|301305055|ref|ZP_07211156.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1] gi|301330176|ref|ZP_07222838.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1] gi|331666290|ref|ZP_08367171.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA271] gi|331680626|ref|ZP_08381285.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli H591] gi|300402673|gb|EFJ86211.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1] gi|300419766|gb|EFK03077.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1] gi|300525542|gb|EFK46611.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7] gi|300839662|gb|EFK67422.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1] gi|300843816|gb|EFK71576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1] gi|315255671|gb|EFU35639.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1] gi|331066501|gb|EGI38378.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli TA271] gi|331072089|gb|EGI43425.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Escherichia coli H591] Length = 428 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATADIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360 >gi|269960923|ref|ZP_06175293.1| survival protein SurA [Vibrio harveyi 1DA3] gi|269834363|gb|EEZ88452.1| survival protein SurA [Vibrio harveyi 1DA3] Length = 427 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 70/404 (17%), Positives = 129/404 (31%), Gaps = 90/404 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 KI+ +LF L G++ A + V V + S + K Q G Sbjct: 1 MKIWKSLLFTTLLSCGVTAAPVEL--DKVAVIVNDGVILQSDINTAMKTLQANARQS-GK 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + S L ++++ L+ Q E IG+ D R+ IA ++N S Sbjct: 58 SLPSASV----LKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEI----ARNNNQS 109 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + EG++ E+ R + R R ++ Sbjct: 110 VEQLAASVQAEGLSYPEF---------REQIRKEIAAS----------EARNALVRRRIN 150 Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + A +NA + +I +I + + K E+ Sbjct: 151 ILPAEVDSLADQLATETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309 + EA+ + LK G F ++A K +L Sbjct: 192 ---------------------------EAEANALVKKLKDGADFSEMAYTYSKGPKALQG 224 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G KE +P AD I + KG G+ I V ++K TV+ EV Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGSIIGPFRSGIGFHILKVEDVKGLETVAVTEVNA 282 Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + A +++ E +R++ A + +++ + Sbjct: 283 RHILIKPTVILSDEGAQKELNEFIRRIK---AGEATFAQLATQY 323 >gi|323975779|gb|EGB70875.1| ppic-type ppiase domain-containing protein [Escherichia coli TW10509] Length = 428 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSVPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 98/306 (32%), Gaps = 27/306 (8%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL- 360 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSSK 502 +++P S + E + R D+ + K +EE +S Sbjct: 361 -------NKGQMSVPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASW 413 Query: 503 ANQLVL 508 + Sbjct: 414 MQEQRA 419 >gi|167579883|ref|ZP_02372757.1| survival protein SurA, putative [Burkholderia thailandensis TXDOH] Length = 448 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 47/410 (11%), Positives = 120/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + D A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAPQTDIDAA 209 Query: 212 VLTQWF-----------------------EKYKDN---YRAPEYKRISYILFDVHEKEKK 245 + K ++AP + + + Sbjct: 210 QKKAEGLLQQALASGTNFERLAKSQSEADDAKKGGDLGFKAPSSLPSDVVDAVSKLRPGE 269 Query: 246 IEISNDELQAEYE----------KNKEKYFSPEIRTVEQLVF-----PNQKEADE----A 286 + + + +E +N V ++ ++ +A + Sbjct: 270 VNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L ++G + + Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNAL-QEGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|91790684|ref|YP_551636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] gi|122070654|sp|Q121Q4|SURA_POLSJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|91699909|gb|ABE46738.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] Length = 473 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 66/473 (13%), Positives = 134/473 (28%), Gaps = 92/473 (19%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + S + I Q+ G + R L ++L+ L+S Q Sbjct: 71 VAVVNSEPITNSEVRTKLVRTEQQIIQQ-GSPLPPRR----ELVPQVLERLISDKAQLQL 125 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 G+ D V + + N+ S D RL +GI ++ L + Sbjct: 126 ARSAGMRVDDNAVEAAVQTV----ARQNQISVDELRRRLKADGIAYSQFESDLRDELLVS 181 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + R VD + + D Sbjct: 182 RLR-----------------------QREVDL----------RVTVTEQDI--------D 200 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 + + ++ + + + + +P V Q + Sbjct: 201 QFLREQEGGTELSSLALNLAQILVAVPEN-------------ATPGQ------VAALQAK 241 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTP 340 A + + G F LA E S + + G + +S SL K G Sbjct: 242 AQQVMDKARGGADFAALANEFSDSPTRGTGGLMGLREADRYPPLFVESTKSL-KVGGLAG 300 Query: 341 VIHGSFGYVIAHVSNIK----PSFTVSFQEVKK---DIANQMRITKASEKVKEDYKRLEE 393 I G+ I V + P ++ + ++ + T A+EK+ KR+ Sbjct: 301 PIRSGAGFHILKVIEKRQAGMPGSVITQTHARHILLRLSPKQGETAATEKLAALRKRI-- 358 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 LA ++R + G +P E+++ + ++ Sbjct: 359 -LAGQADFAALARENS----EDASAKQGGDLGWANPGMFVPEFEKVMNGL-----APNQI 408 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + +Q+ E A+ + ++ + + K E A ++ Sbjct: 409 SDPLVSRFGVHLIQVLERREAQMSQRDQ-REMARNVLRGKKQEEAYVLWAQEV 460 >gi|312880257|ref|ZP_07740057.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] gi|310783548|gb|EFQ23946.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] Length = 344 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 129/426 (30%), Gaps = 94/426 (22%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS---GSSTVVSVGRQKVPFSSFIN 58 ++ +R R + + + + F +G+ V G +K+ SS Sbjct: 3 MKYLRTNVRWIMITVVALFVVSCFAGYGMYSRGQGQGGGMRDYAVAEAGGKKIMRSSLEK 62 Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118 ++ + + S A L K +LDN+V L + +E+ + V Sbjct: 63 GMQEMAEQFGNQ---QITS--ADLPLLRKAVLDNIVVSEQLLREVENQKITVGDDEVATA 117 Query: 119 IARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 + R ++F + + ++ L R ++EK+ + +++ ++ G Sbjct: 118 LKRI------QDQFPTKEAYMQYLQRSNLSEKDVKARLREQIAQQKLMEKVSAG------ 165 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYIL 236 A + ++ KD +R P ++ + Sbjct: 166 ----------------------------ASVDIVDARKLYDAMKDMMFRRPMGYTVNVVT 197 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 F K EA Q L G+K+ Sbjct: 198 FRSESVAK----------------------------------------EARQKLLAGEKW 217 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKKGDFTP-VIHGSFGYVIAHV 353 + + + + + +IPD LA + G TP V S ++A Sbjct: 218 DDVLKACSGDIGNSTP-YSKPVFIPDRELASDLQVIRTLGIGKLTPLVRITSDDILLAVK 276 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + + F EV DI + K E ++ L++ + ++ EK S Sbjct: 277 RTKEAERVLPFAEVSGDIEQTLLAQKKRELQGAYFEELKKKAGVKVLDPKLFEVEKPASA 336 Query: 414 DLPLVD 419 D V Sbjct: 337 DAKPVS 342 >gi|224437416|ref|ZP_03658385.1| hypothetical protein HcinC1_05580 [Helicobacter cinaedi CCUG 18818] Length = 281 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 13/159 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQLAE 301 +++ +++ Y+ N+ + + E ++ + EA + + L K KFI+LA Sbjct: 118 SVNDAQIKEIYKNNEGMFINQE-MHARHILVKTESEAKDIIKELDKAGKKAESKFIELAN 176 Query: 302 EQGKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 + + LG+F + + A++ +L + FGY + ++ Sbjct: 177 AKSTDPASKQAKNGGDLGTFQRN-VMHPDFANAASNLKPGTYTQEPVQTPFGYHVIYLIK 235 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + + E KK I Q+++ + + + L E Sbjct: 236 KSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQKIQALREK 274 >gi|309803457|ref|ZP_07697551.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 11V1-d] gi|308164466|gb|EFO66719.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LactinV 11V1-d] Length = 238 Score = 80.8 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%) Query: 221 KDNYRAPEYKR--ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + N PE + I L + I+ + + +++ + K V+ ++ Sbjct: 40 QQNGMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAWKEYQPK------VRVQHILVE 93 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-----IPDVSLADSIFSLA 333 + A + + L KG F LA++ + + D ++ F L Sbjct: 94 KEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLK 153 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + FGY I + IK SFQ K +I ++ A ++ Sbjct: 154 TGEYTKKPVKTQFGYHIIKM--IKHPSKGSFQSHKSEIIARIYQKMAQDQ 201 Score = 40.4 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 13/158 (8%) Query: 483 LTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ--- 533 KK WK + V + V+E +G +F+D+ K T+ Sbjct: 71 KAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGK 130 Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE-KDKFI 591 I D+ + D F P++ Y + K + + G Q K + I Sbjct: 131 IEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEII 190 Query: 592 SYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 + + Q M +D ++ SV+ + + +V + DN ++ L Sbjct: 191 ARIYQKMAQDQNVIKSVLGVVLKRANVNIKDNDLKNVL 228 >gi|294672824|ref|YP_003573440.1| peptidylprolyl isomerase domain-containing protein [Prevotella ruminicola 23] gi|294472529|gb|ADE81918.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23] Length = 477 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 120/405 (29%), Gaps = 51/405 (12%) Query: 240 HEKEKKIEISNDEL----QAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------ 283 ++ + +++ E+ + YE+ + S + ++ +A Sbjct: 96 DQQVRPTMVTDAEVLDQARQMYERTQAMIGSKGLVRPAHILLKLSTQATVQQQEKIHQRI 155 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTP 340 D +++L+ G F +LA++ + G P D +SLA G + Sbjct: 156 DSVYRALQAGADFAELAKKVSEDTGSAVRGGELPWIAPSQTLKEFEDVAYSLA-PGQLSQ 214 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 GY I + K F +K+ I + ++ + +L +A Sbjct: 215 PFLSPVGYHIILMKERK--QLEPFDSLKQSIVASLERHGIRNEIADM--KLRNRVAAS-- 268 Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460 + + K + D + Y + LL + SK + Sbjct: 269 ----AGKLKPNDVMQQKADSVAAANSELKYLFKEYHDGLLLYEISNREVWSKAQNDEIAL 324 Query: 461 GSYMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 ++ K+ R R + KT + + V L F Sbjct: 325 KAWFDTHKKKYTWKEPRYR-------GIAYHVKTKQDVKAVKQCVKNL---------PFD 368 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 + L + + I R+ E F + + + +Y + V Sbjct: 369 QWAEALRTTFNPDSVI-RIRVEKGLFKLGDNPTIDKM--VFKQATSSTSDANYPIDAVYG 425 Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 K+ + + + L + L+ +Y V V+ ++ Sbjct: 426 KKLKRPDNYQDVRQQVVEDLQDYLEQEWVEALRHRYQVEVNQEVL 470 >gi|157374105|ref|YP_001472705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis HAW-EB3] gi|157316479|gb|ABV35577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis HAW-EB3] Length = 434 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 33/332 (9%), Positives = 99/332 (29%), Gaps = 55/332 (16%) Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 L ++++ L+ Q + IGL ++ I+ D +++ Sbjct: 65 DQALRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTISNIAKEQNLT----VDQMRAKI 120 Query: 142 AREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNN 199 EG++ +Y + + ++ ++ ++ S ++ + E + + Sbjct: 121 GEEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLIEEQGLQQVEFQIGH 180 Query: 200 RHVPAIADPSNAVLTQWFE---------KYKDNYRAP-----------EYKRISYILFDV 239 + + PS+ L + E + D++R E Y+ + Sbjct: 181 ILIEVPSSPSSEALQKASERANTVLKRIQDGDDFRRTAIAASAGPKALEGGVWDYMNVNE 240 Query: 240 HEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----N 279 +S + + + + + + ++ + Sbjct: 241 MPTLFAEVLSGAKTGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHILIKPSPILS 300 Query: 280 QKEADEAFQSL-----KKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFS 331 ++ A F LA + + + G ++ + + A ++ + Sbjct: 301 EERAKAMLDKFVEQVRAGDADFAALARQYSEDPGSGAKGGELGWADPSVYVPAFAQTLNA 360 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 L + G+ + S G+ I + + + Sbjct: 361 L-EIGEISEPFRSSHGWHIVQLEERRKTDATD 391 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 18/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ- 280 YR + I+ + +++I++S E+ + +E+ + ++ Sbjct: 128 SQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLIEEQGLQQVEFQIGHILIEVPS 187 Query: 281 -----------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 + A+ + ++ G F + A + G + + + +L Sbjct: 188 SPSSEALQKASERANTVLKRIQDGDDFRRTAIAASAGPKALEGGVWDYMNVNEMPTLFAE 247 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKED 387 + S AK GD I G+ I V + + T EV I + + E+ K Sbjct: 248 VLSGAKTGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHILIKPSPILSEERAKAM 307 Query: 388 YKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +E+ A ++R+ S D G+ +P Q L + Sbjct: 308 LDKFVEQVRAGDADFAALARQY---SEDPGSGAKGGELGWADPSVYVPAFAQTLNAL 361 >gi|261403916|ref|YP_003240157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] gi|261280379|gb|ACX62350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. Y412MC10] Length = 361 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 109/311 (35%), Gaps = 31/311 (9%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I EKE+ + + F+ L Q + + Y +++ A Sbjct: 52 ITEKEFDLEQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYL-----YAKADDKAKEAA 106 Query: 206 ADPSNAVLTQW--------FEKYKDNYRAPEYKRISYILFDVHEKE-KKIEISNDELQAE 256 ++ +L Q F+ ++ + E +Y+L + E +K +++ ++++ E Sbjct: 107 EKQTDDLLKQQKAGMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKE 166 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQ----------KEADEAFQSLKKGKKFIQLAEEQGKS 306 ++ NK+ Y + +R V + K A E L KG+ F LA+E + Sbjct: 167 FDANKKDYTNISVRHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQD 226 Query: 307 LSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G + + +L + + + +GY + V + Sbjct: 227 PGSKNSGGLYENKPAGSWVPQFKEKALTL-ELNKISDPVETDYGYHVMKVEKREEVTYDK 285 Query: 364 F-QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 + K+ I +++ K ++ + L E + L S E + + + D Sbjct: 286 LPADQKEGIRSELASAKIDNFMQNELNNLIESMNLPKS--ENADKPAEGTGDQKTDGTTD 343 Query: 423 KDVKGKEVAAI 433 K +G + Sbjct: 344 KPAEGDQTPDA 354 >gi|146329550|ref|YP_001209813.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A] gi|146233020|gb|ABQ13998.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A] Length = 421 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 36/380 (9%), Positives = 105/380 (27%), Gaps = 66/380 (17%) Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 V + + +Q+ + ++++ + ++ + Q + Sbjct: 38 VNEEAISRKRLNELLEQQRARAPR-----------DQPYSEEQLQEQIIMQILMAQMAKS 86 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 L + IA H ++ G+++ EY +++ + ++ Sbjct: 87 AHLTVKDAEIDHAIATVAAQHKIS---VAQLYQQIARTMGLSQTEYRQQIAQLMLQDELK 143 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY----- 220 +G N+ Q + + + + + ++ Sbjct: 144 QRLIGRDI--NISEQQINNQITQIIRQRGTKFHLQDLLLPLPKKELPEQAYRQQMQTISQ 201 Query: 221 -----------------KDNY---------RAPEYKRISYILFDVHEKEKKIEISNDELQ 254 K + + P + + E + D L Sbjct: 202 ALKTTGNDLAKTAQLLPKAQFNDLGAVNLGQIPAKFAQAVATLNSGELVAEPVADADGLH 261 Query: 255 AEYEKNKE----KYFSPEIRTVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAEE 302 +K +++ E + ++ ++ + ++ +Q L+ G F QLA Sbjct: 262 FLKVVSKTAANGQHYEVEQGKLRHILIRRDPNNPQFSRLQIEQLYQQLQSGADFAQLAAR 321 Query: 303 QGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 + + LG S + + D ++ + + G+ I V + Sbjct: 322 YSQDPRSAVNGGDLGWMSTDQL-DPRFV-AVMHRIPFNTISEPFESALGWHIIEVFARQ- 378 Query: 359 SFTVSFQEVKKDIANQMRIT 378 + S + ++ I + Sbjct: 379 TVDRSEERIRDHIRRTLYEE 398 >gi|325282949|ref|YP_004255490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus proteolyticus MRP] gi|324314758|gb|ADY25873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus proteolyticus MRP] Length = 652 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 37/365 (10%), Positives = 98/365 (26%), Gaps = 96/365 (26%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + + V + + + + G + + ++ +V Sbjct: 40 RGEQGTPAIRVNGKAITAEKLQKIQDNNPSPFASQ-GKALQDD------FRTFMISQVVR 92 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 + Q D + V E+ + ++N + L R G+++ EY + Sbjct: 93 QELMVQAARD--INVTREDVNAEVTKV---REQNNLTDDAAWTDALQRVGLSDSEYREQV 147 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + L+ A+ + + Sbjct: 148 KEGLAVQRKNEAIE---------------------------------AAVPAATEQEMKT 174 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ ++ + Q+ Sbjct: 175 YYDLNPTLFQT----------------------------------------EQRLRGRQI 194 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF----------SKEYIPDVSL 325 V ++K+A E + G F +LA++ ++ + + + Sbjct: 195 VVDDEKKARELLAQARGGADFAELAKKNSTENAENGGALGALGEGGALQPVEPVVLPEEV 254 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 A ++ +L G T V+ + + V + P T F+ VK+++ ++ +K V+ Sbjct: 255 AAAVQALPAPG-LTDVVASGGRFYVVKVEELLPPETKPFETVKEEVKTELEKSKKRAAVE 313 Query: 386 EDYKR 390 Sbjct: 314 AFMDE 318 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 87/195 (44%), Gaps = 9/195 (4%) Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 + +++++++LQA Y++ ++++ +P V + FP++++A Q + G F Q A Sbjct: 424 RNVKVTDEDLQAAYQERQQQFQTPASAVVSEATFPSREQALAFRQDWQGG-DFTQAATAA 482 Query: 304 GKSLSDISLGSFSKE-YIPDVSLADSIFS--LAKKGDFT--PVIHGSFGYVIAHVSNIKP 358 G +S G + + + + S+ SIF L G + ++ S G+ + V++++ Sbjct: 483 GGIVS--ERGQVAPDTDLMEPSVLQSIFEGELRAVGSTSLTNIVQASDGWKVVAVTDLQQ 540 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-ISRREKIVSIDLPL 417 + EV+ + + K + + ++ L ++E ++ ++ V D P Sbjct: 541 GRVLPLDEVRTSLKASLFNEKQAAEGEKFLSSKVAALKPVNKLEEVLAAQKARVGADAPA 600 Query: 418 VDFAGKDVKGKEVAA 432 + G + Sbjct: 601 DASGAQTASGAAASG 615 >gi|169796158|ref|YP_001713951.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE] gi|260555208|ref|ZP_05827429.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC 19606] gi|169149085|emb|CAM86962.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE] gi|260411750|gb|EEX05047.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC 19606] Length = 441 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 31 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 85 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 86 LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 140 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 141 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 200 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + + V +Q + N +R P + Sbjct: 201 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 260 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 261 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 320 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G+ + FG Sbjct: 321 AGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 378 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 379 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413 Score = 41.1 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%) Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 +G+ E E ++ + + + + L+Q K++ D LN Sbjct: 54 QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 110 Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + L + +K +N R+ + ++ + +I+IS+ ++ Sbjct: 111 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 170 Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + + + V + Q A E L + L ++ + Sbjct: 171 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNAL-KKLSTATV 229 Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355 + + D+ + + + G T +I G + + Sbjct: 230 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 289 Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS + K+ I + + KA E Sbjct: 290 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334 >gi|268602234|ref|ZP_06136401.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|268586365|gb|EEZ51041.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18] Length = 357 Score = 80.8 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 80 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + + + Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 174 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 175 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 220 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + + + ++ Y++ Sbjct: 221 QH---------------ILIKADSKNAAVGAESTIRKIYDQ------------------- 246 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + S LG F+ + + +++ +L K Sbjct: 247 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 293 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + FG+ I ++ ++ + T ++ I N +R +K + L L Sbjct: 294 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 348 Query: 396 ALGTSMD 402 G +D Sbjct: 349 HSGAYVD 355 >gi|254517142|ref|ZP_05129200.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein [gamma proteobacterium NOR5-3] gi|219674647|gb|EED31015.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein [gamma proteobacterium NOR5-3] Length = 296 Score = 80.4 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 20/170 (11%) Query: 255 AEYEKNKEKYF-SPEIRTVEQLVF---------PNQKEADEAFQSLKKGK-KFIQLAEEQ 303 Y EKY PE R ++F P +++A L+ G F + E Sbjct: 121 ERYTLQPEKYGLVPEERKGSHILFRSPPGLDREPLREKATNVLAELRSGAVTFTEAVELY 180 Query: 304 GKSLSDISLGSFSKEYI------PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G +I ++++F++ + G ++ V FG I + IK Sbjct: 181 SEDPGTAKKGGLLDRWITYGDPSISPPFSEALFAVDQPGLYSEVTDTQFGLHIIRLEAIK 240 Query: 358 PSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLALGTSMDEI 404 PS F EVK + ++ A +++ + E+ ++D + Sbjct: 241 PSRIQEFDEVKSKVLTEIVKEYRTLAQQEINSRFLISEDAEIDVEALDRL 290 >gi|226355582|ref|YP_002785322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti VCD115] gi|226317572|gb|ACO45568.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Deinococcus deserti VCD115] Length = 626 Score = 80.4 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 63/423 (14%), Positives = 134/423 (31%), Gaps = 51/423 (12%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 YRA ++++ ++ + E + Y+ N EK+ S Q+V + Sbjct: 137 ATYRAQLREQLAVNRKVEELRKAVPAATEAEAKLYYDLNPEKFQSEARIIGRQIVVAKEA 196 Query: 282 EADEAFQSLKKGKKFIQLAE-------EQGKSLSDISLG---SFSKEYIPDVSLADSIFS 331 +A E ++ G F +A+ ++G +L + G ++ +P + + F+ Sbjct: 197 KAKELLAQVRGGADFAAVAKANSTEFADRGGALGPVENGKPRPVAQVALP-AEVGAAAFA 255 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 L K G T V+ + I V T F E K D + K + ++E + L Sbjct: 256 LTKGG-ITDVVASGDKFYIVKVEQYLAPATKPFAEAKADAITAVTEQKKNAALEEWVEGL 314 Query: 392 E-EFLALGTSMDEISRREKIVSIDLPLVDFA-------GKDVKGKEVAAIP--------- 434 E + + + + ++ V + G + G+ + +P Sbjct: 315 EKDVKIEVKDPNWRTENPVVATVGGQNVRHSDVISQVVGNEQFGQLLQQVPGDQAAQLVN 374 Query: 435 --YKEQLLFRVFGKDDPLSKDHTVALPDGS--------YMWV--QIKESIPARDRKL-EE 481 K Q+ ++ ++ LP + + A + + Sbjct: 375 GMLKPQVTQQLISSYAAPQIARSLKLPVTGTRQEMAAAIAAYGSRNVKVTDADVQAFYTQ 434 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTTNQINRMDNE 540 + ++ L + G+ +F G ++ + Sbjct: 435 NKAQFQSPATATVDEASFKDRSKALAFRNTWNGQGSFATAASKQGGTVSERGSVT---AG 491 Query: 541 NKFFGYDGISQVFSG-----PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595 + G + + VFS E ++ G Y V VT+ K Q S + Sbjct: 492 DGKLGQELNAAVFSARTLKSAGEGSLSDVVKVGERYSVAYVTDLKPATTQPLSAVRSQIE 551 Query: 596 QMM 598 + Sbjct: 552 SQV 554 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 83/203 (40%), Gaps = 8/203 (3%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 + +++++ ++QA Y +NK ++ SP TV++ F ++ +A + F Sbjct: 414 AAYGSRNVKVTDADVQAFYTQNKAQFQSPATATVDEASFKDRSKALAFRNTWNGQGSFAT 473 Query: 299 LAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFSL-----AKKGDFTPVIHGSFGYVIAH 352 A +QG ++S GS + L ++FS A +G + V+ Y +A+ Sbjct: 474 AASKQGGTVS--ERGSVTAGDGKLGQELNAAVFSARTLKSAGEGSLSDVVKVGERYSVAY 531 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 V+++KP+ T V+ I +Q+ TK +E + + L + E+ ++ Sbjct: 532 VTDLKPATTQPLSAVRSQIESQVLATKRNEAGQAFLAKQVAALNPTDKLKEVLAAQEKRV 591 Query: 413 IDLPLVDFAGKDVKGKEVAAIPY 435 D A P Sbjct: 592 AAAAPKAAPKTDSSKPSTGATPE 614 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 60/574 (10%), Positives = 150/574 (26%), Gaps = 96/574 (16%) Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89 L S + + + V + V + + + + ++ + +K+ Sbjct: 30 LGSLFSSPNKGTPALVVNGKTVTAEELDGV--RRSNPVLSSTDTGILGDDFKTFTVAQKV 87 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 LV+ A D ++ V E+ + ++ + L G+ + Sbjct: 88 RQVLVAQAASD-------IKVSRDDVNAEVKKI---REANSLTDSKAWTDALQGVGLTDA 137 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA------KRFYFENRSVDYIVLNNRHVP 203 Y + L+ V + + + ++F E R + ++ + Sbjct: 138 TYRAQLREQLAVNRKVEELRKAVPAATEAEAKLYYDLNPEKFQSEARIIGRQIVVAKEAK 197 Query: 204 AIADPSN----AVLTQWFEKYKDNY----------RAPEYKRISYILFDVHEKEKKIEIS 249 A + A + + + + ++ + ++ Sbjct: 198 AKELLAQVRGGADFAAVAKANSTEFADRGGALGPVENGKPRPVAQVALPAEVGAAAFALT 257 Query: 250 NDEL-------QAEYEKNKEKYFSPEIRTVEQ-----LVFPNQKEADEAFQSLKKGKKFI 297 + Y E+Y +P + + + +++ + A + +G Sbjct: 258 KGGITDVVASGDKFYIVKVEQYLAPATKPFAEAKADAITAVTEQKKNAALEEWVEG--LE 315 Query: 298 QLAEEQGKSLSDISLGSFSK--------------------------EYIPDVSLADSIFS 331 + + + K + + + +P A + Sbjct: 316 KDVKIEVKDPNWRTENPVVATVGGQNVRHSDVISQVVGNEQFGQLLQQVPGDQAAQLVNG 375 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN----QMRITKASEKVKED 387 + K +I IA ++K T + QE+ IA +++T A + Sbjct: 376 MLKPQVTQQLISSYAAPQIAR--SLKLPVTGTRQEMAAAIAAYGSRNVKVTDADVQAFYT 433 Query: 388 YKRLEEFLALGTSMDEISRR------------------EKIVSIDLPLVDFAGKDVKGKE 429 + + ++DE S + S V G G Sbjct: 434 QNKAQFQSPATATVDEASFKDRSKALAFRNTWNGQGSFATAASKQGGTVSERGSVTAGDG 493 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489 + K V Y + + PA + L V + ++ Sbjct: 494 KLGQELNAAVFSARTLKSAGEGSLSDVVKVGERYSVAYVTDLKPATTQPLSAVRSQIESQ 553 Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 K E + + V + K + Sbjct: 554 VLATKRNEAGQAFLAKQVAALNPTDKLKEVLAAQ 587 >gi|27065591|pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding gi|27065592|pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding gi|27065593|pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding gi|27065594|pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding Length = 408 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 25 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 76 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 77 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 132 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 133 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 191 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 192 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 251 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 252 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 311 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 312 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 369 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 370 DAAQKDRAYRMLMNRKFSEEAASWMQE 396 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 104 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 163 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 164 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 223 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 224 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 283 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 284 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 340 >gi|294625755|ref|ZP_06704374.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664833|ref|ZP_06730154.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599925|gb|EFF44043.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605389|gb|EFF48719.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 463 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 43/406 (10%), Positives = 105/406 (25%), Gaps = 68/406 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + IA + N + D +LA +G+ ++ + Sbjct: 87 VSRADGNGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-- 212 + F + S +D Q + ++ A + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLAHILIGLPEGANAEQIATGQKKV 202 Query: 213 --LTQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN--------- 250 + +K + ++ A + + + D I + Sbjct: 203 DGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVAGP 262 Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289 E++ ++K + ++ + + D Sbjct: 263 LRGPSGFQLLKLVEMRDANAGGEKKMVT--EYHARHILVRIGDNQTEAQAKAKIDTIRAR 320 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F A+E + + LG F + + SL G + Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVESLT-DGAVSEPFRTQ 378 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + S + + + + K E+ + L Sbjct: 379 AGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423 >gi|21241635|ref|NP_641217.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306] gi|81804731|sp|Q8PP23|SURA_XANAC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|21106996|gb|AAM35753.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306] Length = 463 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 43/406 (10%), Positives = 105/406 (25%), Gaps = 68/406 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + IA + N + D +LA +G+ ++ + Sbjct: 87 VSRADGNGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-- 212 + F + S +D Q + ++ A + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLAHILIGLPEGANAEQIATGQKKV 202 Query: 213 --LTQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN--------- 250 + +K + ++ A + + + D I + Sbjct: 203 DGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVAGP 262 Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289 E++ ++K + ++ + + D Sbjct: 263 LRGPSGFQLLKLVEMRDANAGGEKKMVT--EYHARHILVRIGDNQTEAQAKAKIDTIRAR 320 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F A+E + + LG F + + SL G + Sbjct: 321 IVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVESLT-DGAVSEPFRTQ 378 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + S + + + + K E+ + L Sbjct: 379 AGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423 >gi|82775458|ref|YP_401805.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae Sd197] gi|309787287|ref|ZP_07681899.1| chaperone surA [Shigella dysenteriae 1617] gi|121956480|sp|Q32K41|SURA_SHIDS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|81239606|gb|ABB60316.1| survival protein [Shigella dysenteriae Sd197] gi|308924865|gb|EFP70360.1| chaperone surA [Shigella dysenteriae 1617] Length = 428 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + + SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLNQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATADIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 63.9 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360 >gi|254494588|ref|ZP_05107759.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291] gi|268599899|ref|ZP_06134066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|268604500|ref|ZP_06138667.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|268685120|ref|ZP_06151982.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|268687382|ref|ZP_06154244.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|226513628|gb|EEH62973.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291] gi|268584030|gb|EEZ48706.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|268588631|gb|EEZ53307.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|268625404|gb|EEZ57804.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|268627666|gb|EEZ60066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] Length = 357 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 80 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + + + Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 174 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 175 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 220 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + E + ++ Y++ Sbjct: 221 QH---------------ILIKADSENAAVGAESTIRKIYDQ------------------- 246 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + S LG F+ + + +++ +L K Sbjct: 247 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 293 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + FG+ I ++ ++ + T ++ I N +R +K + L L Sbjct: 294 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 348 Query: 396 ALGTSMD 402 G +D Sbjct: 349 HSGAYVD 355 >gi|257460463|ref|ZP_05625564.1| foldase protein PrsA [Campylobacter gracilis RM3268] gi|257441794|gb|EEV16936.1| foldase protein PrsA [Campylobacter gracilis RM3268] Length = 269 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 12/162 (7%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295 ++ KI I + E+ Y KNK ++ P Q+V + EA++ + LK Sbjct: 101 AKEASKINIDDKEIADFYNKNKARFTEPARIKAAQIVVKTEAEANDIIKQLKGLSDSALF 160 Query: 296 --FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F +LA+ + LG + + AD+I + T I GY Sbjct: 161 TKFAELAKAKSIDPQAKQTSGELGWMPSDQV--KPFADAISKIKDGQITTKAIRSRVGYH 218 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + +S E K I +R KA++ V++ L Sbjct: 219 VVLKEESQAKKQLSQSEAKPFIERVLRQQKAAKVVEQKAADL 260 >gi|15595896|ref|NP_249390.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAO1] gi|254239075|ref|ZP_04932398.1| hypothetical protein PACG_05257 [Pseudomonas aeruginosa C3719] gi|9946581|gb|AAG04088.1|AE004505_9 probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAO1] gi|126171006|gb|EAZ56517.1| hypothetical protein PACG_05257 [Pseudomonas aeruginosa C3719] Length = 314 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 Score = 37.7 bits (86), Expect = 7.0, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A+ + E KR +E D K D P G D+ G + A Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + + +G + V++ E AR L+EV +++ + + + Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286 Query: 500 SSKANQLV 507 + + LV Sbjct: 287 KAYLDGLV 294 >gi|291529969|emb|CBK95554.1| PPIC-type PPIASE domain [Eubacterium siraeum 70/3] Length = 472 Score = 80.4 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 112/350 (32%), Gaps = 63/350 (18%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGE--------------------- 118 + K I+D L + + + +++GL+ + Sbjct: 95 YAQAYRKNIIDMLTNEKLILRKAKELGLDQLTEEEMAEVEKAYTKNLSDWYASFEKKAKT 154 Query: 119 ---IARSPLFHGKDNKFS-------HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 I+ +D+ ++F +A G+ E ++ T + V Sbjct: 155 ALGISTDDTSGTEDSANDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYL 214 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + + S+ +D A Q +EK +Y Sbjct: 215 LKDITVSDSEVD--------------------DYITKLT---AEAKQAYEKSASSYATDS 251 Query: 229 YKRISYILFDV---HEKEKKIEISN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + +I D I S+ E+ A ++ + + E+L +K Sbjct: 252 EYKKVWIPKDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEKLAEIKEKADA 311 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTP 340 ++ +G F + +E + S+ + G + + + +L D++F+L K GD + Sbjct: 312 ALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSKGLISDALYDAVFALEKPGDISG 371 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +I GY I + + +K + ++ ++ SEK + Sbjct: 372 LIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEE 421 Score = 37.3 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 12/143 (8%) Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR--MDNEN 541 D + D K + E+ KA+ + + + EG +F + K ++ + + + + N Sbjct: 290 DDAEIDKKRDEKLAEIKEKADAALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSK 349 Query: 542 KFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-------KFIS 592 VF+ P ++ P ++G Y+V V+++KV D + ++ Sbjct: 350 GLISDALYDAVFALEKPGDISGLIPTDSGY-YIVKYVSDAKVTDSDLSDYRKTVRQELLT 408 Query: 593 YLTQMMNKDLLDSVIAYLKSQYS 615 +L+ + + +Y Sbjct: 409 SRQSEKTNAILEEWRSAVNYEYD 431 >gi|218893343|ref|YP_002442212.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa LESB58] gi|218773571|emb|CAW29385.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa LESB58] Length = 314 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + V L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQVQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 >gi|309379764|emb|CBX21540.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 327 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 34/273 (12%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLL---DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 ++++R + + D+ + V+ ++ S A + Sbjct: 60 EVITRRRLAQAVADAKANLPKDVQIGDEELTGQVLMQLVNQSLIVQAGKRRNIQASEAEI 119 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 + + + E +R I + +S E+ E+ K+ Sbjct: 120 DAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEVDRFIEQAQKQGITL 179 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + Sbjct: 180 PEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNGTDFSGLARQYSQDAGAGNG 239 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG FS + ++ +L K G + + FG+ I ++ ++ + T ++ Sbjct: 240 GDLGWFSDGVMV-APFEAAVHAL-KPGQVSAPVRTQFGWHIIKLNEVRDAGTP-----EE 292 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 I N +R +K ++ L L G +D Sbjct: 293 RIRNSVRQYIFQQKAEQATAELLRDLHSGAYID 325 >gi|154149760|ref|YP_001403378.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Methanoregula boonei 6A8] gi|153998312|gb|ABS54735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoregula boonei 6A8] Length = 93 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSL 325 ++ ++ +A++ + +K G+ F +A+ S LG F K + Sbjct: 4 QVRASHILVTSEDDANKILKRIKDGEDFAAVAKRFSSCPSKKSGGDLGWFGKNQMVPEFE 63 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 A + A +G + FGY + V+ K Sbjct: 64 AAA--FAADQGTVVGPVKSQFGYHVIKVTGKK 93 >gi|260550086|ref|ZP_05824300.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624] gi|260406841|gb|EEX00320.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624] Length = 441 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 50/405 (12%), Positives = 119/405 (29%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 31 FAQPTDEVVAIVDNSVILKSDLEQGMAEATHELQSQ-----KKEVPPQQYLQFQVLDQLI 85 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 86 LRQAQLEQVKRYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 140 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 141 RGRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 200 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + V ++ + N +R P + Sbjct: 201 VQSVAKEVRSKLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 260 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 261 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 320 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G + FG Sbjct: 321 AGEDFATLAATYSNDTGSARDGGSLGWVNPGMMV-PEFDKKMQEIP-VGQISEPFQTQFG 378 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 379 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 39/285 (13%) Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 +G+ E E ++ + + + + L+Q KR+ D LN Sbjct: 54 QGMAEATHELQSQKKEVPPQQYLQFQVLDQLILRQAQLEQVKRYGI---KPDEKSLNEAV 110 Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + L + +K +N R + ++ + +I+IS+ ++ Sbjct: 111 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRGRIAEDLAINRLRQQQVMSRIKISDQDVD 170 Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + + + V + Q A E L + L ++ + Sbjct: 171 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQSVAKEVRSKLAQSNDLNAL-KKLSTATV 229 Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355 + + D+ + + + G T +I G + + Sbjct: 230 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 289 Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS + K+ I + + KA E Sbjct: 290 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334 >gi|239502210|ref|ZP_04661520.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB900] Length = 436 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 54/407 (13%), Positives = 124/407 (30%), Gaps = 73/407 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 26 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIA---------RSPLFHGKDNKFSHDVFVSRLAREG 145 + ++ G++ D + + F K + + + + R Sbjct: 81 LRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQKFDAIAPGTYENL--RSR 138 Query: 146 INEKEYIDHYTKM--LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 I E I+ + +SR + V S Q + V ++ ++ + Sbjct: 139 IAEDLAINRLRQQQVMSRIKISDQDVDNFLKSP----QGQAALGNQAHVIHMRISGDNPQ 194 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY------ 257 + + + + + D + + + + + EL A Sbjct: 195 EVQNVA-KEVRSQLAQNNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDG 253 Query: 258 --------------------EKNKEKYFSPEIRTVEQLVFPNQ--------KEADEAFQS 289 ++N++K P+ +T L+ P++ + D ++ Sbjct: 254 QTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKR 313 Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G+ F LA + G + SLG + + + + G+ + Sbjct: 314 LKAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQ 371 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I V++ + KD+ ++ + A + + E E Sbjct: 372 FGWHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408 >gi|71660705|ref|XP_822068.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma cruzi strain CL Brener] gi|70887461|gb|EAO00217.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative [Trypanosoma cruzi] Length = 124 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326 V ++ A EA + + +G F +A E + S LG + + Sbjct: 35 KVKVRHILCEKHGRAMEALKKINEGSSFADVAREYSEDKARSGGDLGWKRRGEMVGP-FQ 93 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ F+L K G + SFGY I V + + Sbjct: 94 EAAFALPKGGMTPEPVKTSFGYHIILVEDKQ 124 >gi|116048605|ref|YP_792596.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa UCBPP-PA14] gi|115583826|gb|ABJ09841.1| probable peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas aeruginosa UCBPP-PA14] Length = 314 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 Score = 37.3 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A+ + E KR +E D K D P G D+ G + A Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + + +G + V++ E AR L+EV +++ + + + Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286 Query: 500 SSKANQLV 507 + + LV Sbjct: 287 KAYLDGLV 294 >gi|317493318|ref|ZP_07951740.1| SurA domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918711|gb|EFV40048.1| SurA domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 432 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 66/374 (17%), Positives = 116/374 (31%), Gaps = 78/374 (20%) Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 + L +IL+ L+ Q + +G++ + V I + N S D Sbjct: 58 QQLPDDATLRHQILERLIMDNIQLQMAKKMGIDINDADVDRAIGNI----AQQNHMSLDQ 113 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 SRLA +GIN K Y D K + ++V Sbjct: 114 MRSRLAADGINYKTYRDQIRKEMLISEVRN------------------------------ 143 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 V + ++ A +S+IL + E + ++ + E Sbjct: 144 ---NEVRRRVTILPQEVEALAKQVGAQNGADTELNLSHILIALPENPSQQQVDDAE---- 196 Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 ++A + L KG F ++A + G Sbjct: 197 ------------------------QQARQLVDQLNKGADFGKMAVSYSADSQALKGGQMG 232 Query: 317 KEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKD---I 371 I + SL + AKKGD I G+ I V++++ VS EV + Sbjct: 233 WGKIQELPSLFAAALQTAKKGDIIGPIRSGVGFHILKVNDLRGGQGNVSVTEVHARHILL 292 Query: 372 ANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 M +A K++E ++++ + + DE +R VS D G Sbjct: 293 RPSPVMTDDQARAKLQEIAQQIK---SKQITFDEAARA---VSQDPGSALKGGDLGWAVP 346 Query: 430 VAAIPYKEQLLFRV 443 P L ++ Sbjct: 347 TMYDPAFRDALMKL 360 >gi|229816170|ref|ZP_04446480.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM 13280] gi|229808178|gb|EEP43970.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM 13280] Length = 401 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 99/308 (32%), Gaps = 41/308 (13%) Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLS 160 G+ V +I + + D + + LA +G+ + Y ++ ++ Sbjct: 78 AATVNGVNIKEDTVTNQIMSL-----RTGSYDKDADWAAYLASQGLTPESYRENVIDGIA 132 Query: 161 RTDVV--GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 R ++ G+ S LD+A + +N D + + + Sbjct: 133 RQYLLVEAEKEYGITVSQEDLDKAWKDAVKNYGGDEKAF--VEMIEQVGFT----KDTYL 186 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + A + + E + S++E+ +N Y R ++F Sbjct: 187 ENIKSSLAQQKLK--------DEVAPAEKPSDEEIITYLNENLSTYNGA--RRSSHILFK 236 Query: 279 N------------QKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYI--PDV 323 + EA + + G+ +F + A++ + S G + + Sbjct: 237 VAEDATDEQRAKVEAEAQKVLDQINAGEIEFAKAAKKYSEDSSADKGGDVGWDKLTTFVP 296 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF-TVSFQEVKKDIANQMRITKASE 382 D++ L + ++ ++GY I + + S EV + I + S+ Sbjct: 297 EYQDALSKLG-VDQVSGLVKTTYGYHIIKCTELFEVQAVTSLDEVPEGIRTYVSDMLESQ 355 Query: 383 KVKEDYKR 390 V Y Sbjct: 356 AVATAYGE 363 >gi|327441514|dbj|BAK17879.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris StLB046] Length = 287 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 98/246 (39%), Gaps = 33/246 (13%) Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--------APEYKRISY-IL 236 E +D I+ + V L + E Y +++ E + + Sbjct: 52 LLEQVVIDKILTDQYEVSDKEI--EEQLETYIEMYGESFESALATNGYTEETFKDTIRFQ 109 Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + +E++ +E++ Y++ K + + ++ ++EA + ++ + +G F Sbjct: 110 LLQQKAMEDVEVTEEEIETYYDQGKYELHT------RHILVETEEEAQQLYEQISEGSDF 163 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A+E + + +LG S + + + AD+ ++L + G+ + + + G+ I Sbjct: 164 ETIAKESSQDSETAENGGNLGWLSISDM-ETTFADAAYAL-ETGEVSEPVESTLGFEIIQ 221 Query: 353 VSNIKPSFTVS-FQEVKKDIANQMRITKA---------SEKVKEDYKRLEEFLALGTSMD 402 + + + + +E K++I +R + +KE +++ G + Sbjct: 222 LVDKREVKDYALLEEQKEEIKKTLRERIVANTEWETVEARLLKEANVTIKDADFKGAFSE 281 Query: 403 EISRRE 408 ++ E Sbjct: 282 TLNEEE 287 >gi|15606786|ref|NP_214166.1| hypothetical protein aq_1695 [Aquifex aeolicus VF5] gi|2984018|gb|AAC07562.1| putative protein [Aquifex aeolicus VF5] Length = 296 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 100/376 (26%), Gaps = 117/376 (31%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 I +++ F+ F+ S V V KV + I+ Sbjct: 5 ILVILFFIGFIF------------SQIVAEVDGYKVTKEELDTLFHVFWKRITHLSSAKP 52 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 E R +D V+ + + + +G+E + I Sbjct: 53 TQEDKRIFLIDY------VADLLILKEAKKMGIEVSEKEINDFI---------------- 90 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 K + R + ++ L+ + E Sbjct: 91 --------------------RKYVGRKIKEKSVINAVKAEILVEKLVDKLMKEQ------ 124 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 +PS +L ++E YK + P ++ Sbjct: 125 ---------ELNPSEDILRAYYEFYKREFYRPSSVKLL---------------------- 153 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + ++KEA+ Q LK+G+ + + + Sbjct: 154 ------------------GIYVKSKKEAERISQILKQGEVPST------EDVKVSKPLWY 189 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 S +P + F G+ + I + GY++ + + KP+ + F+ K + Sbjct: 190 SIPTLPKYIRRN--FRTLSVGEVSKPIKINDGYLVFKILDKKPAGFIPFERAKSLVKKMY 247 Query: 376 RITKASEKVKEDYKRL 391 K E K+ + Sbjct: 248 LKEKRKEVFKKWLSEV 263 Score = 38.8 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 58/154 (37%), Gaps = 10/154 (6%) Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS--RREKIVSIDLPLVDFAG 422 +++ + + + + + ++ Y+ + +S+ + + K + + + G Sbjct: 114 EKLVDKLMKEQELNPSEDILRAYYEFYKREFYRPSSVKLLGIYVKSKKEAERISQILKQG 173 Query: 423 KDVKGKEVA-------AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475 + ++V +IP + + R F + + DG Y+ +I + PA Sbjct: 174 EVPSTEDVKVSKPLWYSIPTLPKYIRRNFRTLSVGEVSKPIKINDG-YLVFKILDKKPAG 232 Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 E + VKK + K E ++++ + Sbjct: 233 FIPFERAKSLVKKMYLKEKRKEVFKKWLSEVLKK 266 >gi|254244936|ref|ZP_04938258.1| hypothetical protein PA2G_05813 [Pseudomonas aeruginosa 2192] gi|126198314|gb|EAZ62377.1| hypothetical protein PA2G_05813 [Pseudomonas aeruginosa 2192] Length = 314 Score = 80.4 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 Score = 37.3 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A+ + E KR +E D K D P G D+ G + A Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + + +G + V++ E AR L+EV +++ + + + Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286 Query: 500 SSKANQLV 507 + + LV Sbjct: 287 KAYLDGLV 294 >gi|167835488|ref|ZP_02462371.1| survival protein SurA, putative [Burkholderia thailandensis MSMB43] Length = 448 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 121/410 (29%), Gaps = 68/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + Q+ V +++ L ++L+ +V Sbjct: 39 DEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERIQ 93 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ D+ V + R + N D + +R+ +G+ ++ L Sbjct: 94 VQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTEL 149 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + + V + S+ + ++ +++I + AD A Sbjct: 150 MLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTNAPQADIDAA 209 Query: 212 VLTQ-------------WFEKYKDN-------------YRAP-----EYKRISYILFDVH 240 + K +++P + L Sbjct: 210 QKKADGLLQQALASGANFERLAKSQSEADDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGE 269 Query: 241 EKEKKIEISND-ELQAEYEKNKEKYFSPE----IRTVEQLVF-----PNQKEADE----A 286 I + + E+ E+ + + V ++ ++ +A + Sbjct: 270 VNPALIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDI 329 Query: 287 FQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + ++ G F + A + G + LG S ++ +L + G + + Sbjct: 330 RRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNTL-QDGQVSNPVR 387 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 +GY + V + + S Q+ + KA + + + L + Sbjct: 388 TEYGYHLIQVLGRRDAEG-SVQQQMDIARQAIGQRKAEQAYSDWLRELRD 436 >gi|149280301|ref|ZP_01886423.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter sp. BAL39] gi|149228990|gb|EDM34387.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter sp. BAL39] Length = 454 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 93/306 (30%), Gaps = 72/306 (23%) Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 L I+Q+ +NS + + IL L++ L Q E + D +V E+ Sbjct: 39 LSDINQQYAQYLNSGNPSNESVKCLILRELLTTKLLKQQAEIDSVMVDDSQVDEEV---- 94 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 ++ R G + + L+R+ + D+ + Sbjct: 95 ----------DQRMRYQIQRAG-----GEERLEQFLNRSILQ------------YKDEIR 127 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHE 241 E + ++ + + ++F+ YK + P + I+ Sbjct: 128 PEIKEQMISRKMK---GNITQDVSVTPLEVKKYFDSYKKDSLPDIPTEFEVGEIVLHP-- 182 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 ++ E Q Y+K D +K G+ F LA+ Sbjct: 183 -----TLTKAEKQRFYDK-----------------------IDALRLRVKSGEDFAFLAK 214 Query: 302 ----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + G + LG F + + F L K G+ +PV GY I V + Sbjct: 215 SYSEDPGSAPDGGDLGFFDRAQMVK-EFTAWAFKL-KAGEISPVFETEHGYHILQVIERR 272 Query: 358 PSFTVS 363 + Sbjct: 273 GEQVQA 278 >gi|118576368|ref|YP_876111.1| parvulin-like peptidyl-prolyl isomerase [Cenarchaeum symbiosum A] gi|3599386|gb|AAC62692.1| peptidyl-prolyl cis/trans isomerase [Cenarchaeum symbiosum] gi|118194889|gb|ABK77807.1| parvulin-like peptidyl-prolyl isomerase [Cenarchaeum symbiosum A] Length = 92 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPD 322 + ++ Q EA + LK G+KF +LA+E G + D SLG F + + Sbjct: 2 ADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVK 61 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 D+ F L + G+ + + FGY + Sbjct: 62 P-FEDAAFRL-QVGEVSEPVKSEFGYHVIK 89 >gi|320642095|gb|EFX11446.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7 str. G5101] Length = 428 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 121/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++ + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEARNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATPDIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.2 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEARNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|300816090|ref|ZP_07096313.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1] gi|300531297|gb|EFK52359.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1] Length = 428 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 122/387 (31%), Gaps = 67/387 (17%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRP 174 IA K N + D SRLA +G+N Y + K + ++V + Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152 Query: 175 SNLLLDQAKRFY-FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233 ++ + +N + + L++ +P +P++ + + E Sbjct: 153 LPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNE-AESQARAIVDQARNGAD 211 Query: 234 YILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPE----------------- 268 + + + ++ EL + + + Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSAAKKGDIVGPIRSGVGFHILKVN 271 Query: 269 ------------IRTVEQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKS 306 ++ ++A ++ +K GK F A+E + Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQD 331 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G ++ I D + D++ L KG + +H SFG+ + + + + + + Sbjct: 332 PGSANQGGDLGWATADIFDPAFRDALTRL-NKGQMSAPVHSSFGWHLIELLDTR-NVDKT 389 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 K + K SE+ + Sbjct: 390 DAAQKDRAYRMLMNRKFSEEAASWMQE 416 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 17/239 (7%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR K + +E ++I I E+++ ++ + + + ++ P Sbjct: 124 NYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPL 183 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLA 326 + +A + G F +LA ++ G I + + Sbjct: 184 PENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIF 243 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD-IANQMRITKASEKV 384 S AKKGD I G+ I V++++ S +S EV I + E+ Sbjct: 244 AQALSAAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQA 303 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + +++ + G + + K S D + G P L R+ Sbjct: 304 RVKLEQIAADIKSGKT--TFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRL 360 >gi|77361548|ref|YP_341123.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas haloplanktis TAC125] gi|122070669|sp|Q3IFD3|SURA_PSEHT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|76876459|emb|CAI87681.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas haloplanktis TAC125] Length = 431 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 38/370 (10%), Positives = 110/370 (29%), Gaps = 64/370 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + S + ++ + E + L + ++ LV+ + Sbjct: 28 DKVIGIVNQGVILKSEVDTIVNRVKKQAEEQ-----SQELPKDETLRVQAVERLVNQTLM 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +GLE ++ +A G S + G + + Y + K + Sbjct: 83 MQMAERMGLEISDSQLDQTLASMAKEQGG----SIADLRRTIEGSGESFQAYREEIRKEI 138 Query: 160 SRTDVVGM-FVGGMRPSNLLLDQAKRFYF------ENRSVDYIVLN------NRHVPAIA 206 + V+ + S +D + E + +I+++ + + Sbjct: 139 TTQQVMRANVDRRVYVSEQEVDNLLKIMESQGQNAEEYDIGHILIDIPSDASADEIASAK 198 Query: 207 DPSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKIEISNDE--- 252 ++ V+ ++ ++ A E ++ ++ + + + Sbjct: 199 TRADKVIELLNDE--QEFKRIAISSSSGSQALEGGQLGWMGINEMPSLFAEAVKGKKQGA 256 Query: 253 ------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSL----- 290 + + + ++ ++++A Sbjct: 257 IIGPLRSGAGFHIIKVQDVRGRQVVETTETRSRHILIKPSIILSEEKARSMLAGFVKDLR 316 Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 F +LA+E + G ++ + D++ SL K+ + + FG Sbjct: 317 ADKADFAKLAKEYSEDPGSALKGGEYDWADPTSYVPAFRDTLLSL-KQNEISEPFRSQFG 375 Query: 348 YVIAHVSNIK 357 + I + + + Sbjct: 376 WHIVQLLDTR 385 Score = 59.6 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 72/207 (34%), Gaps = 25/207 (12%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PN 279 YR K I+ ++++ +S E+ + + + + E + ++ P+ Sbjct: 128 QAYREEIRKEITTQQVMRANVDRRVYVSEQEVDNLLKIMESQGQNAEEYDIGHILIDIPS 187 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQ-------------GKSLSDISLGSFSKEYIPDVSLA 326 ADE + + K I+L ++ ++L LG +P + A Sbjct: 188 DASADEIASAKTRADKVIELLNDEQEFKRIAISSSSGSQALEGGQLGWMGINEMPSL-FA 246 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKAS 381 +++ K+G + G+ I V +++ V E + I + KA Sbjct: 247 EAVKG-KKQGAIIGPLRSGAGFHIIKVQDVRGRQVVETTETRSRHILIKPSIILSEEKAR 305 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRRE 408 + K + A ++++ Sbjct: 306 SMLAGFVK---DLRADKADFAKLAKEY 329 >gi|213157107|ref|YP_002319152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB0057] gi|215483612|ref|YP_002325833.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB307-0294] gi|301345175|ref|ZP_07225916.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB056] gi|301511287|ref|ZP_07236524.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB058] gi|332851812|ref|ZP_08433737.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150] gi|332865808|ref|ZP_08436592.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113] gi|193077182|gb|ABO11972.2| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC 17978] gi|213056267|gb|ACJ41169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB0057] gi|213989120|gb|ACJ59419.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB307-0294] gi|332729819|gb|EGJ61154.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150] gi|332735020|gb|EGJ66105.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113] Length = 436 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 26 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 81 LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 135 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 136 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 195 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + + V +Q + N +R P + Sbjct: 196 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 255 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 256 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 315 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G+ + FG Sbjct: 316 AGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 374 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408 Score = 41.1 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%) Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 +G+ E E ++ + + + + L+Q K++ D LN Sbjct: 49 QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 105 Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + L + +K +N R+ + ++ + +I+IS+ ++ Sbjct: 106 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 165 Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + + + V + Q A E L + L ++ + Sbjct: 166 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNAL-KKLSTATV 224 Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355 + + D+ + + + G T +I G + + Sbjct: 225 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 284 Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS + K+ I + + KA E Sbjct: 285 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 329 >gi|220922111|ref|YP_002497412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] gi|219946717|gb|ACL57109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium nodulans ORS 2060] Length = 277 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 17/157 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQSLKKGKK 295 E + +E + YE+N+ ++ +P++ ++F +K+ A LK Sbjct: 99 EPTEEECRRYYERNRARFRAPDLVEASHILFAARKDDATGYELARLNARTVVAMLKADPD 158 Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA S SLG + ++ + + + +G+ + Sbjct: 159 TFEELARVHSACPSAELGGSLGQVTTGQTT-PEFEAALLGMRPGETSSEPVETRYGFHVI 217 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + T+ F+ V++ I + + + Y Sbjct: 218 RLGRRIDGCTLPFEAVRQRI-AEYLSEAVRRRAQAQY 253 >gi|78061944|ref|YP_371852.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] gi|77969829|gb|ABB11208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. 383] Length = 296 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 19/180 (10%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297 S+ ELQ+ Y+KN+ + +P V Q+ AD A S + F Sbjct: 122 SDTELQSAYDKNRAAFTAPRALHVAQIYIAVPPNADAATLDKARKQAADLASRARSGDFA 181 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ + + + G F + + ++ + +L K G + I G+ + + Sbjct: 182 ALAKANSQDKASAANGGDLGFVPDQLMVPAVRQAADAL-KPGQVSAPIQTPAGFHVVKLI 240 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 +++ + +VK+ + +R + + + +L A ++E + ++ + S Sbjct: 241 DVRAAAPRPLADVKEQLRAMLRAQRTQQNAQAYLAKL----AANAPINEDALKKALASAR 296 Score = 43.8 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 3/142 (2%) Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE--QLLFR 442 D L++ + +R ++ G ++ +P + + + Sbjct: 155 NADAATLDKARKQAADLASRARSGDFAALAKANSQDKASAANGGDLGFVPDQLMVPAVRQ 214 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 P + P G + V++ + A R L +V ++ + +T + + Sbjct: 215 AADALKPGQVSAPIQTPAG-FHVVKLIDVRAAAPRPLADVKEQLRAMLRAQRTQQNAQAY 273 Query: 503 ANQLVLEYSKEGKNFRDIGKNL 524 +L + + Sbjct: 274 LAKLAANAPINEDALKKALASA 295 >gi|330507465|ref|YP_004383893.1| peptidyl-prolyl cis-trans isomerase C [Methanosaeta concilii GP-6] gi|328928273|gb|AEB68075.1| Peptidyl-prolyl cis-trans isomerase C [Methanosaeta concilii GP-6] Length = 94 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVS 324 ++ +K+A E + L G + F Q+A + + S LG F K + Sbjct: 4 EVHAAHILCKTEKKALEVKELLASGQESFAQMARKYSQCPSGKSGGDLGWFGKGRMV-PE 62 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + F +KG + FGY + V + K Sbjct: 63 FEKAAFE-GEKGKIIGPVKSQFGYHLIRVLDKK 94 >gi|304396535|ref|ZP_07378416.1| Peptidylprolyl isomerase [Pantoea sp. aB] gi|304356044|gb|EFM20410.1| Peptidylprolyl isomerase [Pantoea sp. aB] Length = 431 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 111/382 (29%), Gaps = 66/382 (17%) Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 Q+ G + ++ L +IL+ + + Q + G++ ++ I Sbjct: 54 QQAGQQLPDDK----TLRHQILERQIMDNIILQMGDKAGVQISDEQLDQAIQNIAA---- 105 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FY 186 NK S D SRLA +G+N Y K ++ +V + +D + Sbjct: 106 QNKMSLDQLRSRLAYDGMNYSVYRSQIRKEMTIAEVRNNEVRRRITILPQEVDTLAKQIG 165 Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 +N + +++ +P +P+ + + E + V Sbjct: 166 SQNSQGTELNVSHILLPLPENPTQQQVDEQ-ETLAKQLVGELKNGADFGKMAVTYSADSQ 224 Query: 247 EISN--------DELQAEYEKNKEKYFSPE-----------------------------I 269 + +EL + + + Sbjct: 225 ALKGGNMGWGKIEELPTLFAQALSSAKKGDIVGPIRSGVGFHILKVNDLRGENKNVSVTE 284 Query: 270 RTVEQLVFP-----NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGS---FS 316 ++ ++A + + F A++ + G ++ Sbjct: 285 VHSRHILLKPSPILTDEQARAQLEQIANDIRSGKTTFAAAAKQYSDDPGSANQGGDLGWT 344 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + D + D++ L KKG + +H SFG+ + + + + R Sbjct: 345 SPEVFDPAFRDALLRL-KKGQTSQPVHSSFGWHLIQLLDTRQVDKTD----AAQKERAYR 399 Query: 377 ITKASEKVKEDYKRLEEFLALG 398 + + +E ++E A Sbjct: 400 MLFNRKFAEEAQTWMQEQRASA 421 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 42/313 (13%) Query: 155 YTKMLSRTDVVGMFV------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 + ++ + G++ S+ LDQA + ++ A Sbjct: 66 LRHQILERQIMDNIILQMGDKAGVQISDEQLDQAIQ----------------NIAAQNKM 109 Query: 209 SNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 S L + YR+ K ++ +E ++I I E+ ++ + Sbjct: 110 SLDQLRSRLAYDGMNYSVYRSQIRKEMTIAEVRNNEVRRRITILPQEVDTLAKQIGSQNS 169 Query: 266 SPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 V ++ P + A + LK G F ++A + G Sbjct: 170 QGTELNVSHILLPLPENPTQQQVDEQETLAKQLVGELKNGADFGKMAVTYSADSQALKGG 229 Query: 314 SFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKKD- 370 + I + +L S AKKGD I G+ I V++++ + VS EV Sbjct: 230 NMGWGKIEELPTLFAQALSSAKKGDIVGPIRSGVGFHILKVNDLRGENKNVSVTEVHSRH 289 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 I + E+ + +++ + G + + K S D + G Sbjct: 290 ILLKPSPILTDEQARAQLEQIANDIRSGKT--TFAAAAKQYSDDPGSANQGGDLGWTSPE 347 Query: 431 AAIPYKEQLLFRV 443 P L R+ Sbjct: 348 VFDPAFRDALLRL 360 >gi|212636811|ref|YP_002313336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella piezotolerans WP3] gi|212558295|gb|ACJ30749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella piezotolerans WP3] Length = 434 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 106/326 (32%), Gaps = 59/326 (18%) Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 L ++++ L+ Q + IGL ++ IA S + +++ Sbjct: 67 ALRTQVIERLILTRLQMQMADRIGLHIGDLQLDQTIANIAKEQN----ISVEDMRAQIES 122 Query: 144 EGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RSVDY------ 194 +G + +Y + + ++ ++ ++ S ++ E + V++ Sbjct: 123 DGTSFAQYREQLREEVTLGEIQRIQVQRRIQVSPQEINNLVSLINEQGLKDVEFQIGHIL 182 Query: 195 IVLNNRHVPAIADPS----NAVLTQWFEKYKDNYR-----------APEYKRISYILFDV 239 I + + A + S + VL + + D++R A E Y+ + Sbjct: 183 IDVPSDATSAQLEASSKRADVVLKRLKDG--DDFRSIAIAASSGPKALEGGIWDYMNINE 240 Query: 240 HEKEKKIEISNDELQAEY---------------EKNKEKYFSPEIRTVEQLVFP-----N 279 +++ ++ + + E ++ + Sbjct: 241 MPTLFAEVVNDAKVNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRHILLKPSPILS 300 Query: 280 QKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFS 331 ++ A D ++ G+ KF +A + + G P+ + ++ S Sbjct: 301 EERAKGMMDRFLAQIRSGEAKFEDIARQYSEDPGSAVKGGELGWADPNVWVPAFKQALNS 360 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIK 357 L KKG+ + + G+ I + + Sbjct: 361 L-KKGEISEPFRSTHGWHIVQLEGRR 385 Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 105/303 (34%), Gaps = 31/303 (10%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQ + +++ + + A + Q Sbjct: 75 RLILTRLQMQMADRIGLHIGDLQLDQTIANIAKEQNI-----SVEDMRAQIESDGTSFAQ 129 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + E+ ++ E +RI + +++I++S E+ E+ + + Sbjct: 130 YREQLREEVTLGEIQRI--------QVQRRIQVSPQEINNLVSLINEQGLKDVEFQIGHI 181 Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322 + + K AD + LK G F +A + G + I + Sbjct: 182 LIDVPSDATSAQLEASSKRADVVLKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINEM 241 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKAS 381 +L + + AK D I G I + + + T +EVK I + + Sbjct: 242 PTLFAEVVNDAKVNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRHILLKPSPILSE 301 Query: 382 EKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 E+ K R L + + ++I+R+ S D G+ +P +Q L Sbjct: 302 ERAKGMMDRFLAQIRSGEAKFEDIARQY---SEDPGSAVKGGELGWADPNVWVPAFKQAL 358 Query: 441 FRV 443 + Sbjct: 359 NSL 361 >gi|50085462|ref|YP_046972.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1] gi|49531438|emb|CAG69150.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1] Length = 451 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 55/411 (13%), Positives = 115/411 (27%), Gaps = 77/411 (18%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + + L ++LD L+ Sbjct: 31 FAAPTDEVVAIVDNSVILKSDLEQGVAEAQHQLEAQ---KKTVPPLNYLQL--QVLDQLI 85 Query: 95 SGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHGKDNKFSHDVFVSRLAREG 145 + ++ G++ D + I F K + + + S R Sbjct: 86 LRQAQLEQVKRYGIKPDENTLNDAVLKVASQSGIKSLSAFQQKLDAIAPGTYASL--RNR 143 Query: 146 INEKEYIDHYTKMLSRTDV--------------VGMFVGGMRP----------SNLLLDQ 181 I E I+ + + + G + G + S++ Q Sbjct: 144 IGEDLAINRLRQQQVMSRIKISDQDVANFLKSPQGQAMLGSQVHVIHARISAQSDVDPQQ 203 Query: 182 AKRFYFE-----NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236 + + N S D ++ + A + Y+D P Sbjct: 204 LQSVAQQVKQALNESNDITAISKKFSTKDIKVEGADM-----GYRDLAELPSELAARVSP 258 Query: 237 FDVHEKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADE 285 + I + + L+ KN E+ ++ ++ D Sbjct: 259 LQAGQTTDLINVRDGIHVLKLIERKNSEQKAIVTQYQTRHILIQPSEVMSAEMAKQTIDS 318 Query: 286 AFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + LK G+ F LA + G + SLG + + + + G + Sbjct: 319 IYNRLKAGEDFTTLAATYSADTGSARDGGSLGWVTPGSMV-PEFESKMKN-TPVGQISEP 376 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 FG+ I V+ + KD+ ++ + A + + E E Sbjct: 377 FQTQFGWHILQVTATRE----------KDMTHEYQERMARQVLGERQFDSE 417 >gi|310639515|ref|YP_003944273.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus polymyxa SC2] gi|309244465|gb|ADO54032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus polymyxa SC2] Length = 372 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 86/285 (30%), Gaps = 44/285 (15%) Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM----FVGGMRPSNLLLDQAK 183 K + + F ++ EY R +V + + + ++ Sbjct: 53 KGGTITENEFNQEISMMKFLYPEYEAALASDQVREQIVKQEVVYKLLAAKADDKAKEEGA 112 Query: 184 RFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + E + + + + +F Sbjct: 113 KQGNEQLEQYKKSVGEDKFKTFLSDQKLTEQGVKDYF-----------------TRVMTV 155 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288 + ++++D+L+ E+EKNK+++ + +R V + F + K A E Sbjct: 156 INSETNKVTDDQLKQEFEKNKDQFTTATVRHVL-INFEDPKTKKQRTKEATLKLAKEVKA 214 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGS 345 L G F +A++ + S G + + ++ + Sbjct: 215 KLDGGADFATIAKKYSEDPGSASNGGLYENASVAQWVPAFKEAA-ETQPINKIGEPVETE 273 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +GY + V + +F ++K + ++ A E ++ + Sbjct: 274 YGYHVIKVESRNE---PTFDKLKDNEKAALKNKLAGESIQNFTEN 315 >gi|34498389|ref|NP_902604.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC 12472] gi|34104243|gb|AAQ60602.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC 12472] Length = 242 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 19/180 (10%) Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN------ 279 A E + I +L + I + Y++ E++ + E ++ P Sbjct: 54 ADEQQAIQTLLDSKLQVPA---IDEASCREFYDRYPERFSAGESAVASHILLPKGEGLEA 110 Query: 280 ---QKEADEAFQSLKKGKK-FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 + +A+ + + F LA+E S SLG F + + ++FS Sbjct: 111 SLIKAKAEGILEEAQANPSRFAALAQEHSTCPSGKQGGSLGQFGRGQMV-PEFEQAVFS- 168 Query: 333 AKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + G TP ++ FGY I V + F EVK+ + + + ++ + E L Sbjct: 169 TEAGQITPHLVETQFGYHIIQVEQRAEGGKIGFDEVKERLQHYLADLAVNQAMHEYLNML 228 >gi|313637843|gb|EFS03178.1| foldase protein PrsA 1 [Listeria seeligeri FSL S4-171] Length = 160 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---PDVSLAD 327 TV ++ ++ A E LK G+KF LA+E + + G + D + Sbjct: 6 TVRHILVDDEATAKEVQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEK 65 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQMRITKASEKV 384 + ++L K D + ++ S+GY + + T + + K I +Q+ + + Sbjct: 66 AAYALEKTDDVSGIVKTSYGYHLIQLVKKIDKTTYAKDKAKVKEAYIQSQLTSENMTAAL 125 Query: 385 KEDYKRLE 392 K++ K Sbjct: 126 KKELKAAN 133 >gi|91790420|ref|YP_551372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] gi|91699645|gb|ABE46474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp. JS666] Length = 289 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 23/188 (12%) Query: 221 KDNYRAPEYKRI--SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 D APE + I V + + + +E + YE +K ++ + V ++F Sbjct: 78 PDALSAPELTEAERTVIETMVDREVTTPQPTEEEGRRYYEAHKPQFVVGQALHVRHILFA 137 Query: 279 NQK---------EADEAFQSLK-KG---KKFIQLAEEQG---KSLSDISLGSFSKEYIPD 322 A+ A L KG ++F QLA E S LG + Sbjct: 138 VTPGVNVQALTVHAERALLELSHKGVRPERFAQLAAELSNCPSSAQGGDLGWIGPDDCA- 196 Query: 323 VSLADSIFSLAKKGDFTPVIH----GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 LA +F L T V FG+ I V + +++EV++ IA + + Sbjct: 197 PELATELFHLQHAQTGTGVHPRLFHTRFGFHIIDVLERRSGRQPAYEEVRERIAALLTMQ 256 Query: 379 KASEKVKE 386 + + + Sbjct: 257 SRARALHQ 264 >gi|187927495|ref|YP_001897982.1| SurA domain [Ralstonia pickettii 12J] gi|309779803|ref|ZP_07674558.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA] gi|187724385|gb|ACD25550.1| SurA domain [Ralstonia pickettii 12J] gi|308921380|gb|EFP67022.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA] Length = 500 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 51/409 (12%), Positives = 108/409 (26%), Gaps = 67/409 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + +N + + RA +G ++L+ L+ Sbjct: 92 DEVVAVVNTDVITRRELLNRADLVERTFRAQNRPL--PPRADLLG---EVLEQLILERVQ 146 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-KM 158 Q ++ G+ V + + N S S+L G+ +Y D ++ Sbjct: 147 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEI 202 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFY--------FENRSVDYIVLNNRHVPA------ 204 L ++ + +D + +V I++ Sbjct: 203 LLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAA 262 Query: 205 ---------IADPSNAVLTQWFEKYKDN--------------YRAPEYKRISYILFDVHE 241 A + R P + + + Sbjct: 263 ARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKAGQ 322 Query: 242 KEKKIEISND--ELQAEYEKNKEK---YFSPEIRTVEQLVFPNQK--EADEAFQSLKK-- 292 ++ S + EK + V ++ AD+A + L Sbjct: 323 VASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLR 382 Query: 293 -----GKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 G F A + G + + LG S + ++ L K GD + + Sbjct: 383 DRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLV-PEFEQAMNQL-KPGDVSQPVQS 440 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + S + + +R K ++ + L + Sbjct: 441 QFGVHLIQVEGRREAEV-SGDRERDYARSVIREQKVQAAYEDWLRELRD 488 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 102/307 (33%), Gaps = 50/307 (16%) Query: 138 VSRLAREGINEKEYIDHYT---------------KMLSRTDVVGMFVGGMRPSNLLLDQA 182 L R + E+ + +L R G+R S+ +D+A Sbjct: 106 RELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDADVDRA 165 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + ++ L ++ A ++KY+D+ R I E Sbjct: 166 VESVAQRNNLSVPQLKSKLKDAGMT---------YDKYRDDLRQ----EILLARLREREV 212 Query: 243 EKKIEISNDELQAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADE------------AFQ 288 + K+++ + E+ + + V Q++ P + A + + Sbjct: 213 DSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKKAEGLLK 272 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F +LA + + LG +P V A+++ + + V+ Sbjct: 273 QAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAV-FANAVVDMKAGQVASQVVESP 331 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRI---TKASEKVKEDYKRLEEFLALGTSM 401 GY + + + S T +V++ + + + T +++ + L + + G Sbjct: 332 AGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDF 391 Query: 402 DEISRRE 408 + +RR Sbjct: 392 GDAARRY 398 >gi|325917324|ref|ZP_08179542.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria ATCC 35937] gi|325536458|gb|EGD08236.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria ATCC 35937] Length = 463 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 46/407 (11%), Positives = 108/407 (26%), Gaps = 70/407 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + IA + N + D +LA +G+ ++ + Sbjct: 87 VGRADGSGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMAYGDFRSSVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-- 212 + F + S +D Q + +V A + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYHLAHILVGLPEGATADQIATGQKKV 202 Query: 213 --LTQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN--------- 250 + +K + ++ A + + + D I + Sbjct: 203 DGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMQPGQVAGP 262 Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAFQS 289 E++ ++K + ++ + + D Sbjct: 263 LRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNARHILVRIGDNQTDAQAKAKIDTLRAR 320 Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G +F A+E + + LG F + + LA G + Sbjct: 321 IAGGAEFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLA-DGAVSEPFRTQ 378 Query: 346 FGYVIA-HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I V + + +S + + I + K E+ + L Sbjct: 379 AGWHIVQRVGSRQ--TDISAENQRAQIRETIGRRKLEEEYNRYLQEL 423 >gi|33598180|ref|NP_885823.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella parapertussis 12822] gi|81713639|sp|Q7W4J5|SURA_BORPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|33566738|emb|CAE38950.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella parapertussis] Length = 519 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 102/321 (31%), Gaps = 54/321 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + + K + ++ G V ER L K++L L+ Sbjct: 55 DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDER----TLQKQVLQRLIMERLE 109 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ +G+ D +V I NK + + + + G+ ++Y + Sbjct: 110 RQEVDRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-E 218 + R+VD A S+A + + + Sbjct: 166 RMDRLR-----------------------QRAVD----------ANIIISDAEVDAFLKD 192 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + ++ A + + ++ + A+ + SP+ V Sbjct: 193 QERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSSPDQ------VAA 246 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+A+ KKG F LA +L +G+ + PD+ + SL+ Sbjct: 247 LRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDL-FVKAAGSLS-A 304 Query: 336 GDFTPVIHGSFGYVIAHVSNI 356 G + ++ G+ I V + Sbjct: 305 GQVSGLVQSGNGFHILKVVDR 325 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 16/147 (10%) Query: 269 IRTVEQLVFPN-----QKEA----DEAFQSLKKGK-KFIQLAEEQGKS---LSDISLGSF 315 ++ +A ++ + L+ G KF +A + + LG Sbjct: 366 QTHARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWV 425 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + ++ +L + + +P + FG+ + V + VS + + + Sbjct: 426 NPGDTV-PPFEAAMNAL-QPNEISPPVLSPFGWHLIQVLERRE-HDVSDEVQRMRARQLL 482 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402 +A ++ ++L + ++ Sbjct: 483 FERRAVPAFEDWLEQLRSQAFIDNRLE 509 >gi|300705125|ref|YP_003746728.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in maturation of outer membrane proteins [Ralstonia solanacearum CFBP2957] gi|299072789|emb|CBJ44144.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Ralstonia solanacearum CFBP2957] Length = 474 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 112/408 (27%), Gaps = 66/408 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + + RA +G ++L+ L+ Sbjct: 67 DEVVAVVNTDIITRRELLDRADLVERTLQAQNRPM--PARADLLG---EVLEQLILERVQ 121 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G+ V + + N S S+L + G+ +Y + + + Sbjct: 122 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLVQSGLAYDKYREDLRQEI 177 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFY-------FENRSVDYIVLNNRHVPAIADPSNA 211 + V ++ + +D + +V I++ + + A Sbjct: 178 LLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAA 237 Query: 212 ---------------VLTQWFEKY--------------KDNYRAPEYKRISYILFDVHEK 242 + + R P + + + Sbjct: 238 RGKAENLLKQAQGGADFAKLVRDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQL 297 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPE-----IRTVEQLVFPNQK--EADEAFQSLKK--- 292 ++ S +K + V ++ AD+A + L Sbjct: 298 AGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRD 357 Query: 293 ----GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 G F A + S LG S + ++ +L K G+ + + Sbjct: 358 RIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLV-PEFEQAM-NLLKPGEVSQPVQSQ 415 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + + + +R K ++ ++L + Sbjct: 416 FGVHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQAAYEDWLRQLRD 462 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 117/369 (31%), Gaps = 46/369 (12%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 L R G+R S+ +D+A + ++ L ++ V + ++ Sbjct: 117 LERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLVQSGLA---------YD 167 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-TVEQLVF 277 KY+++ R I E + K+++ + E+ + V Q++ Sbjct: 168 KYREDLRQ----EILLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILV 223 Query: 278 PNQKEA------------DEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPD 322 P ++A + + + G F +L + + LG S +P Sbjct: 224 PVAEDASAEQKAAARGKAENLLKQAQGGADFAKLVRDNSSGPEAAQGGELGLRSIGRLP- 282 Query: 323 VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRI--- 377 A+++ L K G VI G+ + + + + T + +V + + + + Sbjct: 283 TQFANAVVDL-KPGQLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGP 341 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 T +++ + L + + G + +RR G G+ V Sbjct: 342 TMSADDARRQLAGLRDRIVHGYDFSDAARRYS-QDTSASAGGELGWVSPGQLVPEFEQAM 400 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 LL P V G +Q++ A ++ + + K Sbjct: 401 NLLK-------PGEVSQPVQSQFG-VHLIQVEGRRDAEV-PVDRQRDYARSVIREQKVQA 451 Query: 498 EVSSKANQL 506 QL Sbjct: 452 AYEDWLRQL 460 >gi|32265604|ref|NP_859636.1| hypothetical protein HH0105 [Helicobacter hepaticus ATCC 51449] gi|32261652|gb|AAP76702.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 276 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 14/157 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KKGKKFIQLA 300 +++ +L+ Y++N+ ++ E + ++ ++ EA E + L K KFI+LA Sbjct: 112 TMNDAQLRKIYQENEGEFIDQEGK-ARHILVKSESEAKEIIKELDKVGKAKAEAKFIELA 170 Query: 301 EEQGKSL------SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 + + LG F + + D + + F L + FGY I ++ Sbjct: 171 NAKSIDPASKQQKNGGDLGVFKRAGM-DPMFSKAAFDLKPGTYTKEPVLTQFGYHIIYLE 229 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + +++ KK I N +++ + + + L Sbjct: 230 RKSEPKVIPYKDAKKIIENSIKMQSIQGGMMQKIQAL 266 >gi|319790649|ref|YP_004152282.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1] gi|317115151|gb|ADU97641.1| hypothetical protein Theam_1685 [Thermovibrio ammonificans HB-1] Length = 428 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 12/186 (6%) Query: 211 AVLTQWFEKYKD-NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 L ++K + EY + E EK I+++++E +A YEKNKE++ P+ Sbjct: 232 QALKAGYDKLPRFKHMYEEYYATRAVELFRKELEKGIKVTDEEAKAFYEKNKERFKMPDR 291 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329 F +++ A EA + L+ GK + +A G+ + + ++ P + + Sbjct: 292 VKAVVFYFKSKERALEAKKMLESGKSWQDVARRLGQFNAKEK--FYYRD--PKDPIGALV 347 Query: 330 F--SLAKKGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 F KKG V FG YV +V P + ++EVK + ++ K + Sbjct: 348 FMNGNPKKGQ---VFVADFGGKYVTVYVEKFVPGGVLPYKEVKNYVKLVLKRQKLRQAEV 404 Query: 386 EDYKRL 391 E ++L Sbjct: 405 EKLRKL 410 >gi|107100164|ref|ZP_01364082.1| hypothetical protein PaerPA_01001186 [Pseudomonas aeruginosa PACS2] Length = 314 Score = 80.0 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPTLYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A+ + E KR +E D K D P G D+ G + A Sbjct: 172 AAGGLAEARKRAQELYRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + + +G + V++ E AR L+EV +++ + + + Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286 Query: 500 SSKANQLV 507 + + LV Sbjct: 287 KAYLDGLV 294 >gi|313885295|ref|ZP_07819046.1| putative peptidylprolyl isomerase PrsA1 [Eremococcus coleocola ACS-139-V-Col8] gi|312619401|gb|EFR30839.1| putative peptidylprolyl isomerase PrsA1 [Eremococcus coleocola ACS-139-V-Col8] Length = 316 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 22/241 (9%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL-LLDQAKRFYFENRSVDYIVLNNRHVPA 204 I ++++ + + +T + M + + N+ D K+ E Sbjct: 43 ITKEDFYNEMKSLAGKTTLRSMILENVLKQNVKDADALKKSADE-----------EAQEQ 91 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 + + + + ++ E K+++S++ ++ Y++ Y Sbjct: 92 LDKVGEDQFNAYLNQMQLGSIDEFKYQLYIRNMFQEVVEGKMDLSDEAIKKFYDE---SY 148 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI---P 321 +P +Q++ + EA + L G++F LA+E + + G + Sbjct: 149 ETP--MEAQQILVKTEDEAKDVINRLNNGEEFDALAKELSIDEATAANGGLLSPFTSGQM 206 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 D++ + + +G+ + I +F++VK D+ NQ + +K S Sbjct: 207 VQEFEDAVKASENGSVTQEPVKSQYGFHVIK--TINNGTKQAFEDVKDDVVNQYKQSKFS 264 Query: 382 E 382 + Sbjct: 265 D 265 >gi|327479988|gb|AEA83298.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase [Pseudomonas stutzeri DSM 4166] Length = 292 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 35/244 (14%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEK---- 219 S+ +QA+R ++ VL++ + P A + +E Sbjct: 26 APAALSSQQREQAERIVGRQLQLENAVLHSAEACGVVIPDEQVADAWAEIAARYEDPLAL 85 Query: 220 YKDN---------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 +K R + + EI++ E+ Y + E++ P R Sbjct: 86 HKALDDSGLDEAGLRQLLARELKVETVLQRVCAGLPEITDTEVSLYYFNHPERFVRPATR 145 Query: 271 TVEQLVFPNQKEADE-------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFS- 316 Q++ ++ E A + L+K ++F + A + + S + GS Sbjct: 146 LARQILITVNEDFPENSRTSAWRRINLIAERLLRKPQRFAEQALKHSECPSAMEGGSLGL 205 Query: 317 -KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + L +F+L + G+ PV+ G+ + I P+ +S QEV + ++ Sbjct: 206 IRPGVLYPQLEACLFAL-RAGEIGPVVETPLGFHLLFCEEIHPAGHLSLQEVLPHLREKL 264 Query: 376 RITK 379 R + Sbjct: 265 RARQ 268 >gi|94967775|ref|YP_589823.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis Ellin345] gi|94549825|gb|ABF39749.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis Ellin345] Length = 343 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 100/360 (27%), Gaps = 72/360 (20%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 V + V V + + +Q G E + K L +V Sbjct: 46 VDETKPVARVNGTVLTERDLLREMYTIFPYAAQHNGVPKKME----PEMRKGALQMIVFE 101 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + Q V +I P K Sbjct: 102 ELVYQEA-----------VRRKITFDPSIISKG----------------------EAEMR 128 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 K ++ S + + R R++ +L + V + ++A + Sbjct: 129 KQFPSQQEFDAWIVAQFGSRQAMHEKMR-----RTMLVQILLKKEVNDKSVVTDAQAKAF 183 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 +E + PE I I + + +A Sbjct: 184 YEANSKQFDRPETFSIQTISIIPPQGANPEVKKEADKRAH-------------------- 223 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLA 333 +A +A ++ K ++F LAE+ + +G + +P + + + Sbjct: 224 -----DAFKAAKATKTYEEFGLLAEKVSDDDWHVKMGDRKAIDRASLP-PDVVKAALVM- 276 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 K G+ + +I Y + ++ P+ F EVK + M+ K + K+L + Sbjct: 277 KPGEVSDLIQIGPNYTMFRLNAHTPAGRTPFGEVKAKLQEDMKKAKTEQLRGSFDKQLRQ 336 >gi|296390946|ref|ZP_06880421.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas aeruginosa PAb1] Length = 314 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E F+ G F +L Sbjct: 140 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELFRQAADG-DFAEL 198 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 199 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 258 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 259 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293 Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 A+ + E KR +E D K D P G D+ G + A Sbjct: 172 AAGGLAEARKRAQELFRQAADGDFAELARKHS--DDPQTARNGGDIGG--LLAQAQLLPA 227 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + + +G + V++ E AR L+EV +++ + + + Sbjct: 228 IRPALERLKVGAVSEPIQGANG-FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIA 286 Query: 500 SSKANQLV 507 + + LV Sbjct: 287 KAYLDGLV 294 >gi|268316286|ref|YP_003290005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] gi|262333820|gb|ACY47617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus DSM 4252] Length = 350 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 92/282 (32%), Gaps = 51/282 (18%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 + +E+ + +L R ++ + L+ + + E+ V V++ Sbjct: 71 LTAEEFRQQLSFILQR-------YPQIQMNPALMPEVHKSIIEDFIVR-HVVDGEIARQG 122 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKR--------------------ISYILFDVHEKEKK 245 A + Q E+ + + +PE + + F + + Sbjct: 123 IQADPAAVEQELEQIRARFPSPEAFQEALTQDGLTEDSLRGMIAQMVRQRTFREQIESRA 182 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQSLKKG 293 ++DE++ + E V+ ++F A E S++ G Sbjct: 183 TPPTDDEVEQF------RQQQAEEVHVQHILFRLAPNASEEEAAAVKARAQAVLDSIRSG 236 Query: 294 KKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYV 349 F ++A E G + LG + + ++ F+L GD T + FGY Sbjct: 237 ADFAEMARRHSEDGSAQEGGDLGFIRRGETVEP-FEEAAFALRDSGDVTTEPVRTRFGYH 295 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + + E ++ + + + ++E + Sbjct: 296 LIRLLERRQGTPMDAAEAREQLLQERKQEAVQHLLEELLAKA 337 Score = 38.0 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 12/165 (7%) Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDI 520 P D ++E+ ++ ++ A++ VL+ + G +F ++ Sbjct: 183 TPPTDDEVEQFRQQQAEEVHVQHILFRLAPNASEEEAAAVKARAQAVLDSIRSGADFAEM 242 Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNS 579 + + F+ V P+ Y + ++ Sbjct: 243 ARRHSEDGSAQEGGDLGFIRRGETVEPFEEAAFALRDSGDVTTEPVRTRFGYHLIRLLER 302 Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624 + G + + L Q ++ + ++ L ++ +V ++ L+Q Sbjct: 303 RQGTPMDAAEAREQLLQERKQEAVQHLLEELLAKATVRINPALVQ 347 >gi|153834210|ref|ZP_01986877.1| chaperone SurA [Vibrio harveyi HY01] gi|148869398|gb|EDL68404.1| chaperone SurA [Vibrio harveyi HY01] Length = 427 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 70/404 (17%), Positives = 129/404 (31%), Gaps = 90/404 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 KI+ +LF L G++ A + V V + S + K Q G Sbjct: 1 MKIWKSLLFTTLLSCGVTAAPVEL--DKVAVIVNDGVILQSDIDTAMKTLQANARQS-GK 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + S L ++++ L+ Q E IG+ D R+ IA ++N S Sbjct: 58 SLPSASV----LKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEI----ARNNNQS 109 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + EG++ E+ R + R R ++ Sbjct: 110 VEQLAASVQAEGLSYSEF---------REQIRKEIAAS----------EARNALVRRRIN 150 Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + A +NA + +I +I + + K E+ Sbjct: 151 ILPAEVDSLADQLAKETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309 + EA+ Q LK G F ++A K +L Sbjct: 192 ---------------------------EAEANALVQKLKDGADFSEMAYTYSKGPKALQG 224 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G KE +P AD I + KG G+ I + ++K TV+ EV Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNA 282 Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + A +++ E +R++ A + +++ + Sbjct: 283 RHILIKPTVILSDDGAKKELNEFIRRIK---AGEATFGQLATQY 323 >gi|110636617|ref|YP_676824.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC 33406] gi|110279298|gb|ABG57484.1| possible peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC 33406] Length = 773 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 51/372 (13%), Positives = 121/372 (32%), Gaps = 55/372 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S +++V + F + + G S A S ++ +D Sbjct: 39 SPAILTVADDSISTEDFKYIYDKNNGK----------SADAYSRQSIEEYIDLYTKFKLR 88 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE---KEYIDHYT 156 + E +GL+ + F + + + L +G+ + K+ + Sbjct: 89 VKEAESLGLD-----------TTAAFKQELAGYQKQLAQPYLTEKGVTDMLVKQAYERMK 137 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 + + + ++ P + L+ K R++ + DPS Sbjct: 138 EEIRASHILIFCNPEATPKDTLIAYNKIVALRERALKGENFDQLAAQYSEDPSAKT---- 193 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK----EKYFSPEIRTV 272 K + + Y + K +S ++ ++ + ++ S V Sbjct: 194 ---NKGDLGYFTALSMVYEFEEAAYNTKVGSVSKP-VRTKFGYHILKVVDRRPSQGQIHV 249 Query: 273 EQLV------------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFS 316 ++ + + D+ ++ L+ G + +L E ++ L FS Sbjct: 250 AHIMARYSQGMSAEDSILAKNKIDQIYKELQAGTSWNELCGEFSDDVNSRSKNGELQWFS 309 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + S ++ F+L G +T + +G+ I + KP SF+E++ I ++ Sbjct: 310 TGKMI-PSFENAAFTLTTPGQYTTPVQTPYGWHIIKLLERKPLG--SFEELEPSIRAKVT 366 Query: 377 ITKASEKVKEDY 388 S+ K+ Sbjct: 367 KDSRSDLNKKML 378 >gi|303237614|ref|ZP_07324174.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302482066|gb|EFL45101.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 715 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 69/622 (11%), Positives = 171/622 (27%), Gaps = 97/622 (15%) Query: 48 RQKVPFSSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 +K+ F ++ I ++ + + ++ +V+ ++ + + Sbjct: 50 GKKINVQDFQKLVEEYQDAIKFTMQRDNLSEDELNQ--VKDQVWQQMVTNHVIEADAKKV 107 Query: 107 GLEADHGRVWG--------EIARSPLFHGKDNKFSHDVFVSRLAREG----INEKEYIDH 154 GL + +A++P + + +F + L N ++ Sbjct: 108 GLSVTEQELQNVLNEGTDPMLAQTPFKNQQTGRFDVTILKQFLDEYNKVKTANPQQAEQM 167 Query: 155 -------------YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 L ++ G + + A + E V + Sbjct: 168 KAAYNYWMFVEKNLRSQLLGQKFQALYAGCVLSNKAEAKLAFKDENEEAQVQLASMAYSS 227 Query: 202 VP-AIADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + A ++ L +E+ K +R E + I Y+ + + + N ++ A Sbjct: 228 IKDADIKVTDEDLKAKYEELKPMFRQTIETRDIKYVDYKISASQADRNALNKDMAAY--- 284 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319 Q L + + G + + L SK Y Sbjct: 285 ---------------------------QQQLATAVDPALVVSKSGSLIPYLGLPVSSKAY 317 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 +A I SL I + + + Sbjct: 318 QQYPDIASKIDSLGVGTTAVTPNAQDNTLNIVRIMS--KAQLPD----SVQFRQIQVGAA 371 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 E+ +++ LA G + + I++R + ++ Q Sbjct: 372 TKEQAATKADSIQKALAGGANFEAIAKRYGQTGEKVWFTGQQYENSTSMNQ----DNRQY 427 Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499 + + + ++ V L G+ + +Q+ + + ++ V K ++A Sbjct: 428 INAI--MNGEVNGIQNVVLTQGN-VILQVLDKKAMTTKTTAAIIKKVIDFSKDTRSA--- 481 Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLG-----ASLLTTNQINRMDNENKFFGYDGISQVFS 554 A EY +G D+ KN G + D + + +F Sbjct: 482 ---AFNKFSEYVAKGATLADLEKNAGKYGYRVQEQKNISTAQHDVVGVRATREALKWIFE 538 Query: 555 GPVEMV-KCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIA 608 + + + + ++V +T E + + +++ + +A Sbjct: 539 AKEGDISQLYECGDNDHFMVIALTKVHPQGYRSWDDAEVKEILK--REVIKDKKAEQFMA 596 Query: 609 YLKSQYSVTVHDNLIQRYLDGE 630 LK V+ + + Sbjct: 597 KLKG-----VNTIAAAQAKGAK 613 Score = 67.3 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 47/331 (14%), Positives = 107/331 (32%), Gaps = 29/331 (8%) Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLG 313 K P+ Q+ +AD ++L G F +A+ G++ + Sbjct: 353 SKAQLPDSVQFRQIQVGAATKEQAATKADSIQKALAGGANFEAIAKRYGQTGEKVWFTGQ 412 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDI 371 + + I ++ G+ + + G VI V + K T + + K + Sbjct: 413 QYENSTSMNQDNRQYINAIM-NGEVNGIQNVVLTQGNVILQVLDKKAMTTKTTAAIIKKV 471 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 + + T+++ + + E++A G ++ ++ + + +V Sbjct: 472 IDFSKDTRSA-----AFNKFSEYVAKGATLADLEKNAGKYGYRVQEQKNISTAQ--HDVV 524 Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491 + + L +F + + +M + + + P R ++ +VK+ K Sbjct: 525 GVRATREALKWIFEAKEGDISQLYECGDNDHFMVIALTKVHPQGYRSWDD--AEVKEILK 582 Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYD 547 + KA Q + + +G N + GA + NQI Sbjct: 583 REVIKD---KKAEQFMAKL--KGVNTIAAAQAKGAKVSMVNQITFAAPAFIQATGAAEPA 637 Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 V + P++ VF+V Sbjct: 638 LSGAVAATATGKFSKNPVKGNAGVYVFQVIK 668 >gi|219852695|ref|YP_002467127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanosphaerula palustris E1-9c] gi|219546954|gb|ACL17404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanosphaerula palustris E1-9c] Length = 93 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 + ++ + +A++ + + G F +LA++ + S LG F K + Sbjct: 4 QVSAAHILVKTKDQAEDLKKQISAGGNFGELAKKYSECPSGKKGGELGWFGKGMMV-PEF 62 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 F K+GD + FG+ + + K Sbjct: 63 EKVAFE-GKEGDVVGPVKTQFGFHLIKILGQK 93 >gi|226355966|ref|YP_002785706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti VCD115] gi|226317956|gb|ACO45952.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor [Deinococcus deserti VCD115] Length = 338 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%) Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA----EEQGK 305 + + Y N+ + ++ +Q EA + L+ G F ++A ++ G Sbjct: 178 DAVVAGNYNLNRTSFMRQREACARHILVKSQAEAQAVVKELQAGGDFAKIATSKSQDPGS 237 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + LG F + + + + F+ ++ FG+ + VS + V Sbjct: 238 AAQGGDLGCFGEGDMV-ATFDKASFTGPLN--TPQIVQSEFGWHVVLVSKRTEAGMVPLA 294 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392 E I Q+ A + + +++ Sbjct: 295 EAAPVIREQLTREAAQKYLNSQIAKMK 321 >gi|307728470|ref|YP_003905694.1| SurA domain-containing protein [Burkholderia sp. CCGE1003] gi|307583005|gb|ADN56403.1| SurA domain protein [Burkholderia sp. CCGE1003] Length = 468 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 41/328 (12%), Positives = 89/328 (27%), Gaps = 75/328 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + ++Q+ V +++ L +++L+ +V Sbjct: 57 DTIAAVVNNGVITRRELDERVGLIARRLNQQNAPVPPADQ-----LRQQVLNQMVLERIQ 111 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +++G+ D V + ++ Y Sbjct: 112 LQKAKEVGINIDDAAVQKTL------------------ERLAQANNMSLDTYRARIEAQ- 152 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 G+ + D L + V + S+A + + Sbjct: 153 -----------GVPWATFTSDARTELTLSR-------LREKEVDSKVTVSDAEVANYIAS 194 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 R P S + + + +++A Sbjct: 195 Q----RGPNAGATSDLHMQHIFLKAPLNAPQTDIEA-----------------------A 227 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 QK+A+ K G F +LA+ ++ +G S +P + SL + G Sbjct: 228 QKKAEALLAEAKGGANFEKLAKSNSQAPDAGKGGDMGYASPSKLP-PEFVKAASSL-RPG 285 Query: 337 DFTP-VIHGSFGYVIAHVSNIKPSFTVS 363 P VI + G+ I + + + S Sbjct: 286 QVNPEVIRTNDGFEIVRLVDRRTGQGTS 313 >gi|190572865|ref|YP_001970710.1| putative survival protein SurA [Stenotrophomonas maltophilia K279a] gi|190010787|emb|CAQ44396.1| putative survival protein SurA precursor [Stenotrophomonas maltophilia K279a] Length = 447 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 43/407 (10%), Positives = 109/407 (26%), Gaps = 70/407 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + S + + + + + L +++L+ LV Sbjct: 33 DRIAAVVDEDVILQSELQRAIANIKAQYAGRENQLPPEDV-----LSRQVLERLVLVKLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + + + N + D RLA +GI+ ++ + Sbjct: 88 VARAQGSGIRVSDQELNQAMNSI----AQQNGSNLDALRQRLAHDGIDFNDFRASVRDEI 143 Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPS----N 210 + + F + S +D Q + +V A + Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILVALPDGANADQIATGQKKA 203 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEI 269 + +K + ++ A + Y + + S DE+ + + EK E+ Sbjct: 204 DGVKALLDKGELDFNA---AAVRYSDSPNALEGGDLGWRSLDEIPQAFAQMMEKMKPGEV 260 Query: 270 ------------------RTVE--------------QLVF---------PNQKEADEAFQ 288 R ++ + + D Sbjct: 261 VGPIRGPSGFQLLKLVEVRDASATAGASTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRA 320 Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + G F +A+E + + LG F + + + ++ + G + Sbjct: 321 RIAGGADFETVAKESSEDNNSKGQGGDLGWFPADAF-GPAFGQQVAAI-QDGGVSQPFRT 378 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + + + + + K ++ + L Sbjct: 379 DAGWHILQRVATRQTDVTN-DNQRAQVRETIGRRKLEDEYNRFLQEL 424 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 55/393 (13%), Positives = 117/393 (29%), Gaps = 51/393 (12%) Query: 142 AREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + ++ + +L + V G+R S+ L+QA + + L Sbjct: 63 RENQLPPEDVLSRQVLERLVLVKLQVARAQGSGIRVSDQELNQAMNSIAQQNGSNLDALR 122 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 R D ++ +RA I+ + +I +S E+ A + Sbjct: 123 QRLAHDGIDFND-------------FRASVRDEITVQRLRQSFAQSRISVSEGEVDAALK 169 Query: 259 KNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGK-KFIQLA---EE 302 + + ++ QK+AD L KG+ F A + Sbjct: 170 QQA---TVGNQYHLAHILVALPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSD 226 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +L LG S + IP + A + + K G+ I G G+ + + ++ + Sbjct: 227 SPNALEGGDLGWRSLDEIP-QAFAQMMEKM-KPGEVVGPIRGPSGFQLLKLVEVRDASAT 284 Query: 363 SFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + + I ++ + K L +A G + +++ + Sbjct: 285 AGASTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRARIAGGADFETVAKESSEDNNSKGQ 344 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G A P Q + + G ++ ++ D Sbjct: 345 GGDLGWFPAD---AFGPAFGQQVAAI----QDGGVSQPFRTDAGWHILQRVA--TRQTDV 395 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + V++ K +E + +L E Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEA 428 >gi|220935878|ref|YP_002514777.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219997188|gb|ACL73790.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 443 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 109/366 (29%), Gaps = 63/366 (17%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + S N I + G + + L ++L+ L+ Q Sbjct: 40 VALVEDDVIMHSELQNRLDTVRQQILSR-GGRLPPDDV----LIPQVLERLIIERLQLQQ 94 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 G+ D + + R ++N S F RL +GI+ + + + ++ Sbjct: 95 ATRAGIRIDDITLNQTMERI----ARENSMSLPEFRDRLVADGIDFQVFREQIRDEMTIG 150 Query: 163 DV-VGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPSNAVLTQWFE- 218 + ++ S +D +R V+Y L++ VP + A + E Sbjct: 151 QLRRRQVENRIQVSEQEIDDLIASESGAIDRDVEY-RLSHILVPLPEGANAADIQAARER 209 Query: 219 -----------KYKDNYRAPEY----------------KRISYILFDVHEKEKKIEISND 251 + E ++ + ++ E+S Sbjct: 210 AEAIRKRAVAGENFSELALSESAGQQALEGGDLGWRAAAQVPTLFARNVVLMREGEVSEL 269 Query: 252 E-------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----GKK 295 L E+ + ++ +Q++A E L+ G Sbjct: 270 IRSPSGFHLIKLQERRGGERAQITQTHARHILIQPTAILSQEDARERIAGLRNRILMGND 329 Query: 296 FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA ++G ++ LG + + + +LA + FG+ I Sbjct: 330 FADLARAHSDDRGSAMRGGDLGWTDPGDLV-PQFEEVMNALA-PNTLSEPFLSPFGWHIV 387 Query: 352 HVSNIK 357 V + + Sbjct: 388 EVLDRR 393 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 ++ R + G+R ++ L+Q R ++ Sbjct: 84 RLIIERLQLQQATRAGIRIDDITLNQ-----TMERIARENSMSLPEFRDRLVADGIDFQV 138 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + E+ +D ++ + E +I++S E+ + + Sbjct: 139 FREQIRDE--------MTIGQLRRRQVENRIQVSEQEIDDLIASESGAIDRDVEYRLSHI 190 Query: 276 VFP------------NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320 + P ++ A+ + G+ F +LA + ++L LG + + Sbjct: 191 LVPLPEGANAADIQAARERAEAIRKRAVAGENFSELALSESAGQQALEGGDLGWRAAAQV 250 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITK 379 P + + + L ++G+ + +I G+ + + + + I Q Sbjct: 251 PTLFARNVV--LMREGEVSELIRSPSGFHLIKLQERRGGERAQITQTHARHILIQPTAIL 308 Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + E +E L + +G +++R G G V Sbjct: 309 SQEDARERIAGLRNRILMGNDFADLARAHSDDRGSAMRGGDLGWTDPGDLVPQFEEVMNA 368 Query: 440 LF 441 L Sbjct: 369 LA 370 >gi|194099607|ref|YP_002002738.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|268595616|ref|ZP_06129783.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|293398076|ref|ZP_06642281.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae F62] gi|193934897|gb|ACF30721.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945] gi|268549005|gb|EEZ44423.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|291611339|gb|EFF40409.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae F62] gi|317165096|gb|ADV08637.1| putative cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 333 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 56 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + + + Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 150 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 151 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 196 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + + + ++ Y++ Sbjct: 197 QH---------------ILIKADSKNAAVGAESTIRKIYDQ------------------- 222 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + S LG F+ + + +++ +L K Sbjct: 223 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 269 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + FG+ I ++ ++ + T ++ I N +R +K + L L Sbjct: 270 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 324 Query: 396 ALGTSMD 402 G +D Sbjct: 325 HSGAYVD 331 >gi|89892051|gb|ABD78868.1| peptidyl-prolyl cis-trans isomerase [Trypanosoma cruzi] gi|322821330|gb|EFZ27686.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative [Trypanosoma cruzi] Length = 124 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326 V ++ A EA + + +G F +A E + S LG + + Sbjct: 35 KVKVRHILCEKHGRAMEALKKINEGSSFADVAREYSEDKARSGGDLGWKRRGEMVGP-FQ 93 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ F+L K G + SFGY I V + + Sbjct: 94 EAAFALPKGGMTLEPVKTSFGYHIILVEDKQ 124 >gi|298370562|ref|ZP_06981877.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281172|gb|EFI22662.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str. F0314] Length = 304 Score = 79.7 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 77/264 (29%), Gaps = 29/264 (10%) Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 D T+ V + S + D+ ++ +++ S A Sbjct: 36 DVITQREVAQAVAAARSRLPKGSQISNDELRQQVLSQLVNQSLIIQAGK-RKKIQASEAE 94 Query: 213 LTQWFEKYKDNYRAPEYK-------RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 + + + I + +S+ E+ + + + Sbjct: 95 IDAVLAQNPTQAKKANKAVRRQIADSIVVEKVRQQAIMQNSRVSDAEVDRFLAQAQRQGI 154 Query: 266 SPE------IRTVEQLVFPNQKE---------ADEAFQSLKKGKKFIQLAEEQGKSLS-- 308 + + ++ + + + + G F LA + + S Sbjct: 155 TLPAGEPLRQYKAQHILLKADSDNAVSAAESSIRKIYAQARSGTDFSALARQYSQDTSAG 214 Query: 309 -DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 LG FS + D++ L K G +P + FG+ I ++ ++ + T + Sbjct: 215 NGGDLGWFSDGQMV-APFEDAVHKL-KPGQVSPPVRTQFGWHIIKLNEVRDAGTPE-ERQ 271 Query: 368 KKDIANQMRITKASEKVKEDYKRL 391 + + + KA + + L Sbjct: 272 RNAVRQYISNQKAQQATTNLLQEL 295 >gi|288803875|ref|ZP_06409300.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica D18] gi|288333640|gb|EFC72090.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica D18] Length = 488 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 76/198 (38%), Gaps = 33/198 (16%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 + + + D + + + +SY +++ + I++ +++A E +K + + Sbjct: 84 VQAALDAHLDTLSSFKKEFLSY----RNQQVRPTFITDADVEA--EGHKLYREAQQQVEA 137 Query: 273 -------EQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 ++ ++ AD + +L+ G F +LA++ ++ G Sbjct: 138 NGGMWNCAHILIGLYQNADKEAAEAAKQLADSLYNALRGGADFAELAKKYSTDVNSAMNG 197 Query: 314 S----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 K ++F+L K G+ + + FGY I + + +++ ++ Sbjct: 198 GQLLHLQKGQTV-PEFEKALFAL-KPGEISAPVLSPFGYHIIKMGGRE--SFPTYETLRP 253 Query: 370 DIANQMRITKASEKVKED 387 +I + + E++ + Sbjct: 254 EIMQYIEMQGLREQIIDQ 271 >gi|323493622|ref|ZP_08098743.1| survival protein SurA [Vibrio brasiliensis LMG 20546] gi|323312145|gb|EGA65288.1| survival protein SurA [Vibrio brasiliensis LMG 20546] Length = 432 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 69/375 (18%), Positives = 137/375 (36%), Gaps = 82/375 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V V S S K L ++K G + SE+ L +++ + L+ Sbjct: 28 DNIAVIVNSGVVLQSDIDTSLKT-LKANAKKSGQSLPSEQV----LREQVTEKLIVDTIQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D R+ I ++N+ + + + +A+EG++ E+ + K + Sbjct: 83 QQEAQRIGVRIDDNRLNEAIEEI----ARNNQQTVEQLSASIAQEGLSYAEFREQVRKEI 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 + ++ V R ++ + ++ I A +NA + Sbjct: 139 AASEARNALV-------------------RRRINILPAEVDNLANILAKETNATVQ---- 175 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I V++ + K I Sbjct: 176 -----------YKIGHIQLRVNDGDDKSAI------------------------------ 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +K+A + + LK+G F +A K +L G KE +P AD I +L K Sbjct: 195 -EKQAQQLVEKLKEGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-NLQNK 251 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEF 394 G G+ I + ++K TV+ EV I + + + E V++D K + + Sbjct: 252 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGVQKDLKEITQR 311 Query: 395 LALG-TSMDEISRRE 408 + G + E++++ Sbjct: 312 IKSGKATFAEMAQQY 326 >gi|317046868|ref|YP_004114516.1| SurA domain-containing protein [Pantoea sp. At-9b] gi|316948485|gb|ADU67960.1| SurA domain protein [Pantoea sp. At-9b] Length = 431 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 109/370 (29%), Gaps = 62/370 (16%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ + + + Q E GL+ ++ I N + D SR Sbjct: 62 DDNTLRHQILERQIMDSIVLQMGEKAGLQISDQQLDEAIQNIAG----QNHMTLDQLRSR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKR-FYFENRSVDYIVLN 198 +A +GIN EY K + ++V + +D + +N + ++ Sbjct: 118 IAYDGINYNEYRAQIRKEMMISEVRNNEVRRRVTILPQEVDTLAKQIGSQNTQGTELNVS 177 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250 +P +P+ + E K + V + Sbjct: 178 QILLPLPENPTQQQVDDQ-EALARQLVGELKKGADFGKLAVTYSADPQALKGGNMGWSKI 236 Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFP--- 278 +EL + + + + ++ Sbjct: 237 EELPSLFSQALATAQKGDVVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSP 296 Query: 279 ------NQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADS 328 + + +E ++ GK F A++ + G ++ + D + D+ Sbjct: 297 ILTDDQARAKLEEIAADIRSGKITFAAAAKQYSDDPGSANQGGDLGWTSPEVFDPAFRDA 356 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + L +KG + +H SFG+ + + + + R+ + +E Sbjct: 357 LMRL-QKGQTSQPVHSSFGWHLIQLLDTRQVDKTD----AAQKERAYRLLFNRKFAEEAQ 411 Query: 389 KRLEEFLALG 398 ++E A Sbjct: 412 TWMQEQRASA 421 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 50/319 (15%) Query: 153 DHYTKMLSRTDVVGMFV------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 + + ++ V G++ S+ LD+A + ++ Sbjct: 64 NTLRHQILERQIMDSIVLQMGEKAGLQISDQQLDEAIQ----------------NIAGQN 107 Query: 207 DPSNAVLT---QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 + L + + YRA K + +E +++ I E+ ++ + Sbjct: 108 HMTLDQLRSRIAYDGINYNEYRAQIRKEMMISEVRNNEVRRRVTILPQEVDTLAKQIGSQ 167 Query: 264 YFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311 V Q++ P + A + LKKG F +LA + Sbjct: 168 NTQGTELNVSQILLPLPENPTQQQVDDQEALARQLVGELKKGADFGKLAVTYSADPQALK 227 Query: 312 LGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQEVKK 369 G+ I + SL + A+KGD I G+ I V++++ S +S EV Sbjct: 228 GGNMGWSKIEELPSLFSQALATAQKGDVVGPIRSGVGFHILKVNDLRGESKNISVTEVHA 287 Query: 370 -----DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 + + +A K++E + + + +++ S D + G Sbjct: 288 RHILLKPSPILTDDQARAKLEEIA---ADIRSGKITFAAAAKQY---SDDPGSANQGGDL 341 Query: 425 VKGKEVAAIPYKEQLLFRV 443 P L R+ Sbjct: 342 GWTSPEVFDPAFRDALMRL 360 >gi|223936140|ref|ZP_03628054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514] gi|223895362|gb|EEF61809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514] Length = 350 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 95/294 (32%), Gaps = 33/294 (11%) Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 +V + R F + + + L + K + + L D G Sbjct: 71 QQVELLVGRDADFIRHQYQNNPQEYQ--LRMVDLMGKGLTNLIQRELVLHDFQN---SGF 125 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 ++D+ + + + D + L + + ++ + Sbjct: 126 NVPETIIDEIVQDRIKEKYSDRVQLTKQLQKEGLTF-------------EQFKKQIRDDL 172 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEA 283 Y + I +S +++ Y++++ + + +V +K A Sbjct: 173 IYREMYRKNVPETI-MSPHKIETFYQEHQADFKVADEIKTRIIVLNKPADDTEGSTKKRA 231 Query: 284 DEAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 E LK G F ++A E G + +A+++ L K G++T Sbjct: 232 QEIISQLKNGAAFSEMASVYSEGSTRAQGGDAGWQETSVVLKP-IAEAVSKL-KSGEYTD 289 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 VI + + + +P+ ++V+ DI + + ++ R+E+ Sbjct: 290 VIETPTACFLVLLEDRRPAHVKPLRDVQDDIERTLTAQENFRLYRKWIDRIEKK 343 >gi|59802035|ref|YP_208747.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090] gi|59718930|gb|AAW90335.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090] Length = 333 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 31/221 (14%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + + +P +R I + +S E+ A E+ Sbjct: 118 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 177 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ + + + G F LA Sbjct: 178 AQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIYDQARNGTDFAGLARRYS 237 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 238 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 295 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++ I N +R +K + L L G +D Sbjct: 296 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 331 >gi|289663554|ref|ZP_06485135.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 463 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 46/432 (10%), Positives = 114/432 (26%), Gaps = 72/432 (16%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +L + I L+ A S V V S + + + + + Sbjct: 8 VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L +++L+ L+ + G+ + IA + N + D Sbjct: 68 PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDY 194 +LA +G+ ++ + + F + S +D + + Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVD--TALAQQAATGSQ 176 Query: 195 IVLNNRHVPAIADPSNAVL----------TQWFEKYKDNYRAPEYK-----------RIS 233 L + + + + +K + ++ A + + Sbjct: 177 YHLAHILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLG 236 Query: 234 YILFDVHEKEKKIEISN---------------------DELQAEYEKNKEKYFSPEIRTV 272 + D I + E++ ++K + Sbjct: 237 WRSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNA 294 Query: 273 EQLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEY 319 ++ + + D + G F A+E + + LG F + Sbjct: 295 RHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADA 354 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + LA G + G+ I + + S + + + + K Sbjct: 355 F-GPDFGKQVEGLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRK 411 Query: 380 ASEKVKEDYKRL 391 E+ + L Sbjct: 412 LEEEYNRYLQEL 423 >gi|146281741|ref|YP_001171894.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase [Pseudomonas stutzeri A1501] gi|145569946|gb|ABP79052.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase [Pseudomonas stutzeri A1501] Length = 292 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 35/244 (14%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEK---- 219 S+ +QA+R ++ VL++ + P A + +E Sbjct: 26 APAALSSQQREQAERIIGRQLQLENAVLHSAEACGVVIPDEQVADAWAEIAARYEDPLAL 85 Query: 220 YKDN---------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 +K R + + EI++ ++ Y + E++ P R Sbjct: 86 HKALDDSGLDEAGLRQLLARELKVETVLQRVCAGLPEITDTDVSLYYFNHPERFVRPATR 145 Query: 271 TVEQLVFPNQKEADE-------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFS- 316 Q++ ++ E A + L+K ++F + A + + S + GS Sbjct: 146 LARQILITVNEDFPENSRTSAWRRINLIAERLLRKPQRFAEQALKHSECPSAMEGGSLGL 205 Query: 317 -KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + L +F+L + G+ PV+ G+ + I P+ +S QEV + ++ Sbjct: 206 IRPGVLYPQLEACLFAL-RAGEIGPVVETPLGFHLLFCEEIHPAGHLSLQEVLPHLREKL 264 Query: 376 RITK 379 R + Sbjct: 265 RARQ 268 >gi|325121999|gb|ADY81522.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus PHEA-2] Length = 436 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 48/405 (11%), Positives = 123/405 (30%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 26 FAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + G+ S + F +L + Y Sbjct: 81 LREAQLEQVKKYGIKPDEKSLNEAVLKVA---GQSGSKSLEAFQQKLDA--MAPGTYESL 135 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + + ++ S+ ++ Q + V ++ ++ + Sbjct: 136 RGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQE 195 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + V ++ + N +R P + Sbjct: 196 VQSVAKEVRSKLAQSNDINALKKLSTANVKVEGADMGFRPLSDIPTELAARITPLQDGQT 255 Query: 243 EKKIEISN-----DELQAEYEKNKEKYFSPEIRTVEQL------VFPNQKEADEAFQSLK 291 + + + L+ + + K + R + + ++ D ++ LK Sbjct: 256 TDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLK 315 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G+ + FG Sbjct: 316 AGQDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 374 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408 Score = 44.6 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 143 REGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 ++G+ E E ++ + + + + L+Q K++ D LN Sbjct: 48 QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGI---KPDEKSLNEA 104 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKR---------ISYILFDVHEKEKKIEISND 251 + + L + + K + AP ++ + +I+IS+ Sbjct: 105 VLKVAGQSGSKSLEAF--QQKLDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQ 162 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +++ + + + V + Q A E L + L ++ Sbjct: 163 DVENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAKEVRSKLAQSNDINAL-KKLST 221 Query: 306 SLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN--------- 355 + + + D+ + + + G T ++ G + + Sbjct: 222 ANVKVEGADMGFRPLSDIPTELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKAL 281 Query: 356 ----------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS V+ + K+ I N + KA + Sbjct: 282 VPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSN 329 >gi|261378504|ref|ZP_05983077.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685] gi|269145052|gb|EEZ71470.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685] Length = 331 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + + + E + + ++ A + Sbjct: 64 EVITRRRLAQAVADAKANLPKGVQISDTALTEQVLMQLVNQSLIVQAGKRRNIQAGEAEI 123 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS- 266 + + E +R I + +S E+ E+ +++ + Sbjct: 124 AAVVAQNPSLKNLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEVDRFIEQAQKQGVTL 183 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 184 PEGEPMRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 243 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ SL K G + + FG+ I ++ ++ + T + V+ Sbjct: 244 GDLGWFADGVMV-PAFEETVRSL-KPGQVSAPVRTQFGWHIIKLNEVREAGTPQ-ERVRN 300 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 301 AVRQYIFQQKAERATADLLRDL 322 >gi|239999806|ref|ZP_04719730.1| putative cis-trans isomerase [Neisseria gonorrhoeae 35/02] gi|240014962|ref|ZP_04721875.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI18] gi|240017410|ref|ZP_04723950.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA6140] gi|240116565|ref|ZP_04730627.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID18] gi|240122031|ref|ZP_04734993.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID24-1] Length = 332 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 41/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 55 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + + + Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 149 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 150 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 195 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + + + ++ Y++ Sbjct: 196 QH---------------ILIKADSKNAAVGAESTIRKIYDQ------------------- 221 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + S LG F+ + + +++ +L K Sbjct: 222 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 268 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + FG+ I ++ ++ + T ++ I N +R +K + L L Sbjct: 269 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 323 Query: 396 ALGTSMD 402 G +D Sbjct: 324 HSGAYVD 330 >gi|90411942|ref|ZP_01219950.1| putative survival protein SurA [Photobacterium profundum 3TCK] gi|90327200|gb|EAS43572.1| putative survival protein SurA [Photobacterium profundum 3TCK] Length = 434 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 78/492 (15%), Positives = 145/492 (29%), Gaps = 97/492 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + +++ N + L +++++ L+ Sbjct: 28 DKVVTLVNDSVILQSDVNAMLQTVRINAAEQ-----NQPLPDNALLTEQVMEKLIIETLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ D R+ +A K+ + + L + GI+ + + + + Sbjct: 83 LQQAEQFGIRIDDTRLDQAVAEI----AKERELTIPQLQQELEKSGISYSIFREQMRRDM 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + E R++ + +P D L Sbjct: 139 T-------------------------ASEARTIQ-VRRRINILPQEVDMLAEQL------ 166 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K + IS+I V E K++ Sbjct: 167 NKQTLQTV-QFNISHIQLRVEEGATKVQREE----------------------------T 197 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 Q++A + LK G F LA K+L G +E +P AD I S KG Sbjct: 198 QQQAQQLVDELKNGADFANLAYSYSKGPKALQGGEWGWMRQEEMP-TIFADQIKS-NGKG 255 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391 GY I V+++K TVS EV I + A ++++ Sbjct: 256 AIIGPFRSGVGYHIIKVNDVKGLETVSVTEVNARHILIKTSVILSDDGAKRQLEKAR--- 312 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 ++ LA + + + +S D G+ +P + + + P Sbjct: 313 QDILAGRQTF---ADEAQKLSSDPGSAANGGELGWQTPDLYVPEFKDKVETL-----PKG 364 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + V++ E DR V + + K EE + +L Sbjct: 365 TISEPFKTVHGWHIVEVLERRNV-DRTDAAVKNRAYRILFSRKFNEEAQAWLQEL----- 418 Query: 512 KEGKNFRDIGKN 523 + G +G N Sbjct: 419 RAGAYIEQLGTN 430 >gi|291042915|ref|ZP_06568656.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2] gi|291013349|gb|EFE05315.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2] Length = 333 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 56 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + + + Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 150 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 151 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 196 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + E + ++ Y++ Sbjct: 197 QH---------------ILIKADSENAAVGAESTIRKIYDQ------------------- 222 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + S LG F+ + + +++ +L K Sbjct: 223 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 269 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + FG+ I ++ ++ + T ++ I N +R +K + L L Sbjct: 270 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 324 Query: 396 ALGTSMD 402 G +D Sbjct: 325 HSGAYVD 331 >gi|169335547|ref|ZP_02862740.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM 17244] gi|169258285|gb|EDS72251.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM 17244] Length = 504 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 75/174 (43%), Gaps = 8/174 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLA---EE 302 + + + + E+ KN + Y + + ++ ++ A E ++ +KG F Q+ ++ Sbjct: 321 KPTEKDAEKEFNKNTKAYDKS-TVSAKHILTSDKSLAKEIYEQATQKGADFDQIMSKYQK 379 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 LG+F+ + + + + F A+KG + +GY + +V + K + Sbjct: 380 NSAVQEASDLGAFTYPSMVE-DFSKAAFD-AEKGSVVGPVKTEYGYHVIYVYD-KNTVEP 436 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 F++ K I +++ E V + + +++ +++I ++ +L Sbjct: 437 KFEDSKDTILSKLDSQNKLEAVNKLDEDIKDKHNGKVEIEDIDEPYNMLLAELK 490 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 16/152 (10%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71 + KI + + V L ++ + V VG ++P + L Sbjct: 4 IKKIIGIAMAVTLLFSAFGCSVNEEKLANKAVAKVGDTEIPKMNLDAVVGFTLVSYYANS 63 Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-------IARSPL 124 G ++ E + L +++ +NLV + + +D G + V I S Sbjct: 64 GTEISMEDSSVSSLKEEVANNLVEYELVKKAAKDYGYTKNDKEVKEAAKETLKSIKSSSY 123 Query: 125 FHGKDNKFSHDVFVSRLAREGI-NEKEYIDHY 155 G D + S L + G +EK + + Sbjct: 124 LKG-------DKYKSVLKQYGFEDEKSFENAV 148 >gi|52840553|ref|YP_094352.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627664|gb|AAU26405.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 446 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 69/468 (14%), Positives = 140/468 (29%), Gaps = 90/468 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + I + N + L K++L +L+ Sbjct: 42 DKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQMPDESVLRKQVLQHLIDVDLE 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ ++ + I + N + + ++GI+ +EY + + Sbjct: 97 MQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRDEITKQGISWQEY----RQNI 148 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++ + + V +N + Q+ + Sbjct: 149 RKEMLIS-----------------------------RVQQKAVGKDIIVTNEQVEQYLKT 179 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 RI H K I +S + P + +++ Sbjct: 180 ---------SGRIENSNLTYHLKNIVIPLSEE---------------PTTKQLQR----A 211 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + EA+ +KKG+ F +LA E+ +L LG +P+V A + + K G Sbjct: 212 KIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEV-FAKEVVHM-KVG 269 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQMRITKASEKVKEDYKRLEEF 394 I G+ + + + V + + + AS E K++ Sbjct: 270 QVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHILLKPDASMVPSEAIKQVNNI 326 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 S + + K S+D G +P E+ + + H Sbjct: 327 YRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSL--------PLH 378 Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500 V+ P + + E I R + E V++ + K E V Sbjct: 379 KVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 426 >gi|1213605|emb|CAA65154.1| orf1 [Campylobacter jejuni] Length = 281 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 26/278 (9%) Query: 234 YILFDVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 Y + +I + EL+ Y ++NK KY + ++ N+ D A LK Sbjct: 12 YEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLK 71 Query: 292 --KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 KF+ L + D ++ DV + + AK GD + GY+ Sbjct: 72 NVANAKFLDLKNGKDNFQKDQNISE------SDVYYPIDLLNKAKNGDVLRPAPYNNGYI 125 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 I ++ + P +F+E ++++ +A + ++E K G + +SR Sbjct: 126 IVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKN-SLVNFKGDDIGFVSRDSS 184 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 S+ + ++ L VF D V + D + +I Sbjct: 185 RESVKV-----------SDKILNDSEFAYFLMNVFNTD---QNSSYVVINDNKAILYKIN 230 Query: 470 ESI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + K E+ T ++++ + +K E ++L Sbjct: 231 KQKLDMNSDKFEQYKTMLEQNLQNLKANELKQELVDEL 268 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 19/262 (7%) Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421 ++ N+++ + KV + ++ + +A ++ ++ +DL Sbjct: 29 KELEKFYNQDENKLKYKDFAGKVMD-FQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDN 87 Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481 + + + + Y LL + D + + Y+ V++ + P R++ EE Sbjct: 88 FQKDQNISESDVYYPIDLLNKAKNGDVLRPAPY-----NNGYIIVKLNKVDPIRNKTFEE 142 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541 +V + + + + + KA ++ + +G + + ++ + + D+E Sbjct: 143 AREEVLPMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEF 200 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596 +F + VF+ + + N +++K+ K+ Q K L Sbjct: 201 AYFLMN----VFNTDQNS--SYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQN 254 Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618 + +L ++ LK Y + + Sbjct: 255 LKANELKQELVDELKKIYPIKI 276 >gi|315644393|ref|ZP_07897533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] gi|315280270|gb|EFU43562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] Length = 311 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 99/272 (36%), Gaps = 22/272 (8%) Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + + I E E++D K R ++ M QA + + +D Sbjct: 48 ASIQDRAITEDEWVDELKKRYGREMLMTMLN----------RQAVALEAKAKGIDITTAE 97 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQA 255 + S ++ + ++ E +Y + + I ++ A Sbjct: 98 VDAEIDVMSRSYGSKERFLSEMENQLGITEAELRMETTYRMLLEKIATSDVYIEPQQIDA 157 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDIS 311 E +++ + + + ++ EA++A L+ G+ F LA E Sbjct: 158 YLELYPDQFRPKKQLNLSMIEVASEDEANQAMDRLENGEDFAALASEISLDEYTREEGGQ 217 Query: 312 LGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +G ++ +L D+ L + GD I + Y I ++ +I S ++++ Sbjct: 218 IGLIEEDDPFLPPALLDAALEL-EPGDIAGPISLTDTYAIVYLHDIIEPKAPSEDKIREA 276 Query: 371 IANQMRITKA---SEKVKEDYKRLEEFLALGT 399 + Q+ + ++ SE ++ ++ E ++ GT Sbjct: 277 VRKQLALEQSISLSELERQLREKYEARISAGT 308 >gi|313105527|ref|ZP_07791795.1| putative peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas aeruginosa 39016] gi|310878297|gb|EFQ36891.1| putative peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas aeruginosa 39016] Length = 247 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKKGKKFIQL 299 S+ ELQA Y+ NK + P + V Q+ + +K A E ++ G F +L Sbjct: 73 SDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQAADG-DFAEL 131 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADS---IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A + G + L + K G + I G+ G+ + ++ Sbjct: 132 ARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANGFHLVKLTER 191 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + EV+ + +R + + K L Sbjct: 192 RDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 226 >gi|288929625|ref|ZP_06423469.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317 str. F0108] gi|288329130|gb|EFC67717.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317 str. F0108] Length = 474 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 27/192 (14%) Query: 250 NDELQAEYEKNKEKYFSPE--IRTVEQLVFPNQKEA-----------DEAFQSLKKGKKF 296 + + Y+ K++ IR ++ QK A D + +LK+G F Sbjct: 107 DKAARQLYDDTKQRIEGQGGLIRVAHIMLLLPQKSAKDLQRRAEQRIDSIYNALKRGADF 166 Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA ++G + L K D+ F+L K G+ + + GY I Sbjct: 167 AALARKLSDDKGSAQQGGELPWLQKGQTLK-EFEDAAFAL-KPGEISKPLLSPAGYHIIK 224 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG----TSMDEISRRE 408 + + + + VK DI + T E++ + +L E T+ D + R Sbjct: 225 MIERR--SFLPYDSVKADIFAYIEQTNMREQIID--NKLNELAKASPTPRTTADVLEERA 280 Query: 409 KIVSIDLPLVDF 420 + + P + F Sbjct: 281 QAMQAKDPALRF 292 >gi|254785700|ref|YP_003073129.1| nitrogen fixation protein NifM [Teredinibacter turnerae T7901] gi|237686104|gb|ACR13368.1| nitrogen fixation protein NifM [Teredinibacter turnerae T7901] Length = 293 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 35/246 (14%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSN------AVLTQWFEKYKDNYRAPEYKRIS 233 D A R ++ VL++ ++ PSN + +E+ D Y + + Sbjct: 32 DDALRIAQRKIRIEEAVLSSSAAAKVSVPSNQIDEALDQIRGRYEEESDFYTDIQRVGVD 91 Query: 234 ----YILFDVHEKEKKI---------EISNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277 Y + I ++ E+ Y N K+ PE+RT ++ Sbjct: 92 ETFFYQALSRELHVEAILDFISSDCDGVTETEISLYYYMNVAKFQMPEVRTARHILVTIN 151 Query: 278 ---------PNQKEADEAFQSL-KKGKKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSL 325 + K+ ++ L KK +F + A + + + + G K + + Sbjct: 152 EDNVENSRANSLKKINQIVSRLDKKPDRFAEQALKHSECPTSLQGGLMGKVKRGVLYPEI 211 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 ++F+L K G+ + V+ G+ I I+ T+ Q+V + + K ++ + Sbjct: 212 EQALFAL-KVGELSEVVESPLGFHIVLCEEIQQEGTLPLQDVYPRLEEFLLNRKRKQRQR 270 Query: 386 EDYKRL 391 + + + Sbjct: 271 QWLESI 276 >gi|291556857|emb|CBL33974.1| PPIC-type PPIASE domain [Eubacterium siraeum V10Sc8a] Length = 472 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 117/327 (35%), Gaps = 17/327 (5%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR--SPLFHGKDNKFSHDVFV 138 + K I+D L + + + +++GL+ E+ + + F Sbjct: 95 YAQSYRKNIIDMLTNEKLILRKAKELGLDQLTEEEMAEVEKAYTKNLSDWYASFEKKAKT 154 Query: 139 SR-LAREGINEKEYIDHYTKMLSRTD-VVGMFVGGM-RPSNLLLDQAKRFYFENRSVDY- 194 + ++ +G + E + K+L + + ++ G + L + + DY Sbjct: 155 ALGISTDGTSGTEDSANDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYL 214 Query: 195 ---IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---HEKEKKIEI 248 I +++ + A Q +EK +Y + +I D I Sbjct: 215 LKDITVSDSEIDDYITKLKAEAKQAYEKSASSYATDSEYKKVWIPEDARYIKYIAVGIAS 274 Query: 249 SN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 S+ E+ A ++ + + E+L +K ++ G F + +E + Sbjct: 275 SDYAEINAARNESGADDAEIDKKRDEKLAEIKEKADAALKKATADGADFDAVVKEYSSAY 334 Query: 308 SDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S+ + G + + + +L D++F+L K GD + +I GY I + Sbjct: 335 SESTAGEQILVLNSKGLISDALYDAVFALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSD 394 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKR 390 +K + ++ ++ SEK + Sbjct: 395 LSNYRKTVRQELLTSRQSEKTNAILEE 421 >gi|293608269|ref|ZP_06690572.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828842|gb|EFF87204.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 441 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 48/405 (11%), Positives = 122/405 (30%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 31 FAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 85 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI-- 152 + ++ G++ D + + + + S + F +L + Y Sbjct: 86 LREAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--MAPGTYESL 140 Query: 153 -DHYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + + L+ + + + ++ S+ ++ Q + V ++ ++ + Sbjct: 141 RNRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQE 200 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + V ++ + N +R P + Sbjct: 201 VQSVAQEVRSKLAQSNDINALKKLSTANVKVEGADMGFRPLSDIPAELAARITPLQDGQT 260 Query: 243 EKKIEISN-----DELQAEYEKNKEKYFSPEIRTVEQL------VFPNQKEADEAFQSLK 291 + + + L+ + + K + R + + ++ D ++ LK Sbjct: 261 TDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLK 320 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + D G+ + FG Sbjct: 321 AGQDFATLAATYSNDTGSARDGGSLGWVTPGMMV--PEFDKQMQEIPVGEISEPFQTQFG 378 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 379 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 413 Score = 45.0 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 86/286 (30%), Gaps = 39/286 (13%) Query: 143 REGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 ++G+ E E ++ + + + + L+Q K++ D LN Sbjct: 53 QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGI---KPDEKSLNEA 109 Query: 201 HVPAIADPSNAVLTQWFEK----YKDNYRAPEYK---RISYILFDVHEKEKKIEISNDEL 253 + + + L + +K Y + + ++ + +I+IS+ ++ Sbjct: 110 VLKVASQSGSKSLEAFQQKLDAMAPGTYESLRNRIAEDLAISRLRQQQVMSRIKISDQDV 169 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307 + + + + V + Q A E L + L ++ + Sbjct: 170 ENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAQEVRSKLAQSNDINAL-KKLSTAN 228 Query: 308 SDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN----------- 355 + + D+ + + + G T ++ G + + Sbjct: 229 VKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVP 288 Query: 356 --------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS V+ + K+ I N + KA + Sbjct: 289 QFQTRHILIQPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSN 334 >gi|126641590|ref|YP_001084574.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC 17978] Length = 414 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 4 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 58 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 59 LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 113 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 114 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 173 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + + V +Q + N +R P + Sbjct: 174 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 233 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 234 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 293 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G+ + FG Sbjct: 294 AGEDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 351 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 352 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 386 Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 39/285 (13%) Query: 144 EGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 +G+ E E ++ + + + + L+Q K++ D LN Sbjct: 27 QGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGI---KPDEKSLNEAV 83 Query: 202 VPAIADPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 + + + L + +K +N R+ + ++ + +I+IS+ ++ Sbjct: 84 LKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVD 143 Query: 255 AEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 + + + V + Q A E L + L ++ + Sbjct: 144 NFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNAL-KKLSTATV 202 Query: 309 DISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN------------ 355 + + D+ + + + G T +I G + + Sbjct: 203 KVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQ 262 Query: 356 -------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS + K+ I + + KA E Sbjct: 263 YQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 307 >gi|240113831|ref|ZP_04728321.1| putative cis-trans isomerase [Neisseria gonorrhoeae MS11] gi|240118789|ref|ZP_04732851.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID1] gi|240126540|ref|ZP_04739426.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-92-679] gi|240129002|ref|ZP_04741663.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035] gi|260439674|ref|ZP_05793490.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI2] Length = 332 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 94/367 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 55 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + + + Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKN------------------LSPTQRRELADNI 149 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 150 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 195 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + E + ++ Y++ Sbjct: 196 QH---------------ILIKADSENAAVGAESTIRKIYDQ------------------- 221 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + S LG F+ + + +++ +L K Sbjct: 222 -----------ARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 268 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 G + FG+ I ++ ++ + T ++ I N +R +K + L L Sbjct: 269 GQVGAPVRTQFGWHIIKLNEVRDAGTP-----EERIRNSVRQYIFQQKAGQATVNLLRDL 323 Query: 396 ALGTSMD 402 G +D Sbjct: 324 HSGAYVD 330 >gi|120613390|ref|YP_973068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120591854|gb|ABM35294.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 476 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 43/403 (10%), Positives = 110/403 (27%), Gaps = 66/403 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + + ++ + G + +++L+ L++ Q Sbjct: 73 VAVVNTEPITNNEVQARVARVEHQLAAQGGERPPRRV-----IAREVLERLINEKIQVQM 127 Query: 103 IEDIGLEADHGRV--------WGEIARSPLFHG--KDNKFSHDVFVSRLARE----GINE 148 + G++ D V P H + S + F S L + + E Sbjct: 128 ATESGIKVDDYAVSQAEQSVARQNSVSIPEMHRRLAADGISPERFRSELRNQLLIQRLRE 187 Query: 149 KEYIDHYT------KMLSRTDVVGMFVGGMR---------------PSNLLLDQAKRFYF 187 ++ R + S +++Q ++ Sbjct: 188 RDVESRVRVSDLDVDQYMRDQQQSAMSDPSKIELNLGHILVSVPENASPEVVEQRRQRAQ 247 Query: 188 ENRSV-----DYIVLNNRHVPAIADPSNAVLT-QWFEKYKDNYRAPEYKRISYILFDVHE 241 + D+ + A P+ L + ++Y D + + + Sbjct: 248 QAADRVRAGEDFAKVARDLSDAPEAPTGGELGLRPADRYPDLFLRTVQQVPVGGIAGPVR 307 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLK 291 + L+ + V ++ ++ A+ + L Sbjct: 308 SPAGFHV----LRVIERSRAGIPATALQNHVRHILLRTGPQLTEAAAAERLAEYRRRILS 363 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F LA E + S LG +++ +L K + + + FG Sbjct: 364 GQADFATLAREHSQDGSAKQGGDLGWAGPGRYV-PEFEEAVDAL-KPDEISQPVVSRFGV 421 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + + ++ + + + +R K E + Sbjct: 422 HLIQLLERREAKLTQREQ-RDMVRDAVREKKLEEAFTNWAQEA 463 Score = 46.1 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 43/371 (11%), Positives = 108/371 (29%), Gaps = 50/371 (13%) Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 V G++ + + QA++ SV ++ R P + Sbjct: 124 QVQMATESGIKVDDYAVSQAEQSVARQNSVSIPEMHRRLAADGISP-------------E 170 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRTVE--QLVFPN 279 +R+ ++ + E ++ +S+ ++ ++ + P + ++ Sbjct: 171 RFRSELRNQLLIQRLRERDVESRVRVSDLDVDQYMRDQQQSAMSDPSKIELNLGHILVSV 230 Query: 280 QKEA------------DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + A +A ++ G+ F ++A + + LG + PD+ Sbjct: 231 PENASPEVVEQRRQRAQQAADRVRAGEDFAKVARDLSDAPEAPTGGELGLRPADRYPDLF 290 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ---EVKKDIANQMRITKAS 381 L G + G+ + V + + V+ + + Sbjct: 291 LRTV--QQVPVGGIAGPVRSPAGFHVLRVIERSRAGIPATALQNHVRHILLRTGPQLTEA 348 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + + L+ ++R G +P E+ + Sbjct: 349 AAAERLAEYRRRILSGQADFATLAREHSQDG----SAKQGGDLGWAGPGRYVPEFEEAVD 404 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEV 499 + K ++ P S V + + + R+ KL E V+ + K E Sbjct: 405 AL--------KPDEISQPVVSRFGVHLIQLLERREAKLTQREQRDMVRDAVREKKLEEAF 456 Query: 500 SSKANQLVLEY 510 ++ A + Sbjct: 457 TNWAQEARARA 467 >gi|298372477|ref|ZP_06982467.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275381|gb|EFI16932.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral taxon 274 str. F0058] Length = 650 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 19/119 (15%) Query: 269 IRTVEQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGKSL----SDISL 312 V ++ + A + LK G F +A+E S L Sbjct: 226 KVKVAHILKQFPENATKEQRAKLKSEIYAIYDKLKNGADFASMAKENSDDEMSANSGGVL 285 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 F + +V ++ F L KGD + I +G+ I + + KP SF+++K DI Sbjct: 286 NEFGVGRMVEV-FENTAFGLKNKGDISSPIETPYGWHIIQLIDRKP--VDSFEKMKSDI 341 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 54/363 (14%), Positives = 120/363 (33%), Gaps = 52/363 (14%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR-HVPAIADPSNAVLT 214 +L+ T +V V + SN+L+ + +Y+ L NR +V + L Sbjct: 3 RYILALTVIVISLVMNAQDSNILM-TLGKNKVTKDDFEYLFLKNRTNVKTKPQTIDEYLQ 61 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-------- 266 + +R + + K+++ +++ Y +K+K + Sbjct: 62 TY-----KKFRLKVIDAEALGYDTLGSFRKELDSYRNQMAIGYLTDKDKEKALIEEAYRN 116 Query: 267 -PEIRTVEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-- 311 + ++ ++A + LKK + F +A + + Sbjct: 117 MQQDVEASHILLLLPQNATPEDTAKVYQKALNIIKRLKK-ENFRTVATAESDDVGTKDNG 175 Query: 312 --LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK- 368 LG + + + + ++SL G + I +GY I V+N + + VK Sbjct: 176 GYLGWITGQMMV-YPVEKELYSLP-IGKISSPIRTGYGYHIIKVTNRRQAVGK----VKV 229 Query: 369 KDIANQM---RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 I Q + K+K + + + L G +++ + + Sbjct: 230 AHILKQFPENATKEQRAKLKSEIYAIYDKLKNGADFASMAKENSDDEMSANSGGVLNEFG 289 Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485 G+ V E FG + + P G + +Q+ + P E++ +D Sbjct: 290 VGRMV------EVFENTAFGLKNKGDISSPIETPYG-WHIIQLIDRKP--VDSFEKMKSD 340 Query: 486 VKK 488 + Sbjct: 341 IIT 343 >gi|294669050|ref|ZP_06734136.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309042|gb|EFE50285.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 291 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 18/237 (7%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFEN-RSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYK 221 + + L+ +A+R E + N R A Q ++ Y+ Sbjct: 57 LRNQLLSNTVTRMLVNQEARRLKLEQGQEFKTASENARKSAKEQGADKHADFKQQWDDYQ 116 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + K IS+ E++ Y+++++ Y + +++ PN+ Sbjct: 117 AALLIQAFVS---------HIIKTNPISDQEIRRAYDESRKYYQGSSEVQLGEILTPNKA 167 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD------SIFSLAKK 335 +A++A + LK K F A + + G + E+ L + KK Sbjct: 168 DAEQAIKDLKAKKPFTDTARKYSADPAVKQTGGINPEFDALKDLEQSVPPIYAAVKDLKK 227 Query: 336 GDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G F + + G+ + I ++ + +P F++V+ +I ++ K S V Y++ Sbjct: 228 GQFTSTPVVGNGVFGIFYIHDKRPLQLPPFEQVQNNIRRSLQQQKISRAVDALYQKA 284 >gi|326798883|ref|YP_004316702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp. 21] gi|326549647|gb|ADZ78032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp. 21] Length = 464 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 66/479 (13%), Positives = 140/479 (29%), Gaps = 92/479 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 VG + S + Q L ++ G+ IL+ L++ L Sbjct: 28 DKVAAVVGGNIILQSDIEMQYAQYLSEGNR-----------ADPGVKCMILEQLLTNKLL 76 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +E V I ++ + G E K L Sbjct: 77 TQQAAIDSIEVTEDEVDDNI--------------NNRLRYMTRQAGGQE-----QLEKFL 117 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 +R+ + + +Q + + + + ++FEK Sbjct: 118 NRSLLQYK----EEMRPAVKEQLIAQKMQ-----------AKITEKTGITPLEVKRYFEK 162 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + P Y +V E +++ +E Q Y++ Sbjct: 163 IPKD-SLPNYN----TEVEVGEIVVFPKLTKEEKQPFYDR-------------------- 197 Query: 280 QKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 A+ +K G F +A ++ G + S LG F + + F L K Sbjct: 198 ---AESLRMGIKAGDDFGTMARLYSQDPGSASSGGDLGFFDRSSMVK-EFTSVAFRL-KP 252 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVS---FQEVKKDIANQMRITKASEKVKEDYKRLE 392 G+ + V +G+ V + + VK N+ + +A +++ Y +++ Sbjct: 253 GEISNVFESEYGFHFLQVLERRGEQVRARHILIGVKP---NEQSMERAKKQIDSIYTQVK 309 Query: 393 E------FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + A S DE+++ + ++ + ++ A + + Sbjct: 310 DNKIPFSTAAALYSGDEMTKYNGGMMLNAMNQQTRTTYIPVDQLDAADFSAIDTLKAGEY 369 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505 P + +G +K LE+ +K+ + K VS + Sbjct: 370 SKPFAFSDPQTKKEGYRFLY-LKSRTEPHRASLEKDYAKIKELAEADKLNRVVSEWFEE 427 >gi|296313516|ref|ZP_06863457.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768] gi|296839936|gb|EFH23874.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768] Length = 332 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + + +P +R I + +S E+ A E+ Sbjct: 117 IQASEAEIDAVVAQNPSLKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 176 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 177 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 236 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ SL K G + + FG+ I ++ ++ + T Sbjct: 237 QDASAGNGGDLGWFADGVMV-PAFEETVRSL-KPGQVSAPVRTQFGWHIIKLNEVREAGT 294 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + V+ + + KA + + L Sbjct: 295 PQ-ERVRNAVRQYIFQQKAERATADLLRDL 323 >gi|90409117|ref|ZP_01217239.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3] gi|90309791|gb|EAS37954.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3] Length = 413 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 126/405 (31%), Gaps = 67/405 (16%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V ++ + S K + L ++ILD L++ + Q Sbjct: 10 AIVNQEVILSSDVKRMEKDIRARYLKM-----QQALPSKQKLRQQILDKLINDSLQLQVA 64 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 E +GL D+ +V I + K + + L+R+G + + + D L+ + Sbjct: 65 ERMGLRLDNAQVDQTIQQI----LKKEGKNIAQYQQELSRKGQSYQAFSDSVRNELTINE 120 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN--AVLTQWFEKYK 221 + M V + +Q + + D H I ++ A L + K Sbjct: 121 IRQMQVRQRLN---ISEQEINLMVQRLNKDGKKNTQFHFIHILLKTDPNAPLHAQQQAKK 177 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISN------DELQAEYEKNKEKYFSPE------- 268 R + + S + + K ++ + DE+ + + ++ + + Sbjct: 178 IMQRLAQGESASSLARQYSQGPKALDGGDWGWRTVDEIPSLFADKFDELKTKKGDILGPF 237 Query: 269 -----------------------IRTVEQLVFP-----NQKEADEAF-----QSLKKGKK 295 ++ + K+A + L+ Sbjct: 238 KTRLGLSIIQVSDKKGIKNTTTLEVNARHILIKSNIILSDKKAKLLLNTYRQEILEGKAN 297 Query: 296 FIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +LA ++ G ++ +LG + + D SL + G+ + H G+ I Sbjct: 298 FAELARAHSQDPGSAVKGGNLGW-ADPNMYVPEFRDRAQSL-RIGEISKPFHTMHGWHIL 355 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 V + + T K+ + + + +V + + Sbjct: 356 EVLEKRQADTTEKAS-KQKAYSILYKQRFPAEVYAWMNEIRQEAY 399 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 92/299 (30%), Gaps = 18/299 (6%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 K R ++ + + R + + IA L++ Sbjct: 43 KQKLRQQILDKLINDSLQLQVAERMGLRLDNAQVDQTIQQILKKEGKNIAQY-QQELSRK 101 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + Y+ + ++ + +++ IS E+ ++ + ++ Sbjct: 102 GQSYQA-FSDSVRNELTINEIRQMQVRQRLNISEQEINLMVQRLNKDGKKNTQFHFIHIL 160 Query: 277 FPN--------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--LA 326 Q++A + Q L +G+ LA + + + G + + ++ A Sbjct: 161 LKTDPNAPLHAQQQAKKIMQRLAQGESASSLARQYSQGPKALDGGDWGWRTVDEIPSLFA 220 Query: 327 DSIFSL-AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKA 380 D L KKGD G I VS+ K + EV I + + KA Sbjct: 221 DKFDELKTKKGDILGPFKTRLGLSIIQVSDKKGIKNTTTLEVNARHILIKSNIILSDKKA 280 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 + + + E A + ++ ++ + +A ++ E ++ Sbjct: 281 KLLLNTYRQEILEGKANFAELARAHSQDPGSAVKGGNLGWADPNMYVPEFRDRAQSLRI 339 >gi|304313026|ref|YP_003812624.1| hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1] gi|301798759|emb|CBL46992.1| Hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1] Length = 750 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 235 ILFDVHEKEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 + + + I I++ E+ A YEK++ + + + +QK+AD ++KG Sbjct: 559 MHHSPEQIRRLIKTITDTEIDAYYEKHQRDFQQIGEVSARHITVSSQKDADRVVDEIRKG 618 Query: 294 KKFIQLAEEQGKSLS-----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG- 347 F + + + S+G S+ ++S + + G+ + G Sbjct: 619 LSFEEAVRKYSLASDKTENPPGSMGRISRTE-KNLSFLQKLTLILPAGEVSNSFRMPDGK 677 Query: 348 -YVIAHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + I V + S S + V+ +I + KA + + L Sbjct: 678 SWEILWVDSRTAVSLPKSDESVRSEIRRTLAQEKAQTQFADQVADL 723 >gi|156973131|ref|YP_001444038.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116] gi|156524725|gb|ABU69811.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116] Length = 427 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 129/404 (31%), Gaps = 90/404 (22%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 KI+ +LF L G++ A + V V + S + K Q G Sbjct: 1 MKIWKSLLFTALLSCGVTAAPVEL--DKVAVIVNDGVILQSDIDTAMKTLQANARQS-GK 57 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + S L ++++ L+ Q E IG+ D R+ IA ++N S Sbjct: 58 SLPSASV----LKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEI----ARNNNQS 109 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 + + + EG++ E+ R + R R ++ Sbjct: 110 VEQLAASVQAEGLSYSEF---------REQIRKEIAAS----------EARNALVRRRIN 150 Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 + + A +NA + +I +I + + K E+ Sbjct: 151 ILPAEVDSLADQLAKETNATVQ---------------YKIGHIQLRFSDDKDKSEV---- 191 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSD 309 + EA+ + LK G F ++A K +L Sbjct: 192 ---------------------------EAEANALVKKLKDGADFSEMAYTYSKGPKALQG 224 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G KE +P AD I + KG G+ I + ++K TV+ EV Sbjct: 225 GDWGWMRKEEMP-TIFADQI-KMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNA 282 Query: 370 D---IANQ--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 I + A +++ E +R++ A + +++ + Sbjct: 283 RHILIKPTVILSDDGAKKELNEFIRRIK---AGEATFGQLATQY 323 >gi|296123565|ref|YP_003631343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces limnophilus DSM 3776] gi|296015905|gb|ADG69144.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces limnophilus DSM 3776] Length = 415 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 103/293 (35%), Gaps = 39/293 (13%) Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG--INEKEY--------IDHYTKMLSRT 162 +V + +P+F + + + LA+ + ++ + + R Sbjct: 99 AQVVARVNGAPIFASEV----LERYGEVLAQAREKLPPDKFNLLRENIIAQNLRAHVERQ 154 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK- 221 +V M+P L Q + + + L + P +E K Sbjct: 155 LIVERMRADMKPDQ--LKQLDGYLDAAFEKEMVKLK-EQLKVQTKPELE-----YELNKR 206 Query: 222 ----DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-- 275 ++ R + + + K I+ +L YE + E++ +Q+ Sbjct: 207 GTCLEDVRQSFQNNRIAMEYLAVKAGKPEPINRKDLVEYYESHPEEFRLESRVKWKQIQC 266 Query: 276 --VFPNQKEA----DEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLA 326 + +Q++A A + L G+ F +A + ++ G K + D L Sbjct: 267 SFLKSDQEQARVKMKSALEELANGESFEDVARKYSDGVTAKEGGHWDWTQKGSLSDKKLE 326 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + +F+ AK G+ + V Y + V + + F EV+++I ++ T+ Sbjct: 327 EILFT-AKVGELSDVTIIGRAYQVVFVEERESAGMRPFAEVQQEIHKKIEPTR 378 >gi|294673596|ref|YP_003574212.1| peptidyl-prolyl cis-trans isomerase-like protein [Prevotella ruminicola 23] gi|294472759|gb|ADE82148.1| peptidyl-prolyl cis-trans isomerase-like protein [Prevotella ruminicola 23] Length = 711 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 89/726 (12%), Positives = 193/726 (26%), Gaps = 137/726 (18%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-----VSGSSTVVSVGRQKVPFSSF 56 L IRK R + + F+ +A S + V K+ F Sbjct: 4 LGKIRK--RGVALVCIIGLGLFAFI---AEEAFRSCEATKNQQRQQIGEVLGNKINVQDF 58 Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + ++ + + E + ++ V+ + E +GL + Sbjct: 59 QALVDEYQDVLKITQNRENFSEEELNQ--IKDQVWSQYVNEQIIANEAEKLGLTVTDEEL 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRL---AREGINEK------------EYI 152 + +SP + + +F + L + G N + ++I Sbjct: 117 QNIMKEGTNPMLMQSPFVNQQTGRFDVTMLTKFLDDYKKAGSNPQLAESYQTIYKYWQFI 176 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNL----------------------------------- 177 + + + + SN Sbjct: 177 EKQLRTNTLAQKYQALLSNCLLSNPISAKMAFEGQNTESDIQLASIAYSSINDNDVKVDD 236 Query: 178 --------LLDQAKRFYFENRSVDYIVLNNRHVPAI-----ADPSNAVLTQWFEKYKDNY 224 + + E+R + Y+ A ++A Sbjct: 237 KDLKAKYDEEKEMFKQDVESRDIKYVDFQVVASAADRKELMKTMTDAAQKLQSGANAAEV 296 Query: 225 RAPEYKRISYILFDVHEKEKKIEI-----------SNDELQAEYEKN------KEKYFSP 267 + +Y ++ +I ++ + ++ K +P Sbjct: 297 ARKAQSQFAYTGMAATKRAYPSDIAAKLDSMAVGQTSAVFETAFDNTLNVVKLIAKTQAP 356 Query: 268 EIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 + Q+ +K AD + +LK G F QLA++ G+ + + Sbjct: 357 DSIEYRQIQVGGATVEAAKKTADSIYTALKAGADFEQLAQKYGQ---PGTKQWLTSAMYE 413 Query: 322 DVSLADSI----FSLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + S D + V + F G +I V+ K V I + + Sbjct: 414 NSSSIDEESKTYLAAINNLAVNDVKNLEFTQGNIILQVTARKAMVDKYDAAV---IKHTI 470 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435 +K + E Y + +F++ +++++ + + VA + Sbjct: 471 DFSK--QTYSEAYNKFSQFVSENKTIEDMEKNAAKFGFKV--TPRQDLFNYEHNVANLRS 526 Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 + + +F + + V + + P R + + +K + K Sbjct: 527 TRETMKWIFDAKPGEVSPLYECGNNDHLLVVALTKINPVGYRDMSSLKDVLKAEVIRDKK 586 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN-----RMDNENKFFGYDGIS 550 E++ +K G N K GA + NQI + + Sbjct: 587 FEQIKAKL---------AGVNDLAAAKAKGARIDAVNQITFSAPVFVQATGASEPALAGA 637 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 + E K NG +Y+ V S + QM + L Sbjct: 638 VAAAKAGEFSKHVVKGNGGAYLFKVVKKSNRAGAKFDAAQTEAQLQMQATQAARIFMQEL 697 Query: 611 KSQYSV 616 + V Sbjct: 698 YQKAGV 703 >gi|320182962|gb|EFW57830.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri CDC 796-83] Length = 428 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 115/391 (29%), Gaps = 78/391 (19%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA K N + D SRLA +G+N Y + K + ++V Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 143 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 V + ++ + A +S+I Sbjct: 144 ------------------------NEVRRRITILPQEVESLAQQVGNQNDASTELNLSHI 179 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L + E +++ E +A + G Sbjct: 180 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGDD 211 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +LA ++ G I + + S AKKGD I G+ I V+ Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 355 NIK-PSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 +++ S +S EV I + E+ + +++ + G + + K S Sbjct: 272 DLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKT--TFAAAAKEFS 329 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 D + G P L R+ Sbjct: 330 QDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 >gi|167749278|ref|ZP_02421405.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702] gi|167657771|gb|EDS01901.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702] Length = 472 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 111/350 (31%), Gaps = 63/350 (18%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGE--------------------- 118 + K I+D L + + + +++GL+ + Sbjct: 95 YAQSYRKNIIDMLTNEKLILRKAKELGLDQLTEEEMAEVEKAYTKNLSDWYASFEKKAKT 154 Query: 119 ---IARSPLFHGKDNKFS-------HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168 I+ +D+ ++F +A G+ E ++ T + V Sbjct: 155 ALGISTDDTSGTEDSANDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYL 214 Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 + + S+ +D A Q +EK +Y Sbjct: 215 LKDITVSDSEVD--------------------DYITKLK---AEAKQAYEKSASSYATDS 251 Query: 229 YKRISYILFDV---HEKEKKIEISN-DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 + +I D I S+ E+ A ++ + + E+L +K Sbjct: 252 EYKKVWIPEDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEKLAEIKEKADA 311 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLAKKGDFTP 340 ++ G F + +E + S+ + G + + + +L D++F+L K GD + Sbjct: 312 ALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKGLISDALYDAVFALEKPGDISG 371 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +I GY I + + +K + ++ ++ SEK + Sbjct: 372 LIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEE 421 >gi|308185631|ref|YP_003929762.1| survival protein SurA precursor [Pantoea vagans C9-1] gi|308056141|gb|ADO08313.1| survival protein SurA precursor [Pantoea vagans C9-1] Length = 431 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 110/378 (29%), Gaps = 74/378 (19%) Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128 Q+ G + ++ L +IL+ + + Q E G++ ++ I Sbjct: 54 QQAGQQLPDDK----TLRHQILERQIMDNIILQMGEKAGIQISDEQLDQAIQNIAA---- 105 Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188 N+ S D SRLA +G+N Y K ++ Sbjct: 106 QNRMSLDQLRSRLAYDGMNYSVYRSQIRKEMT---------------------------- 137 Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 + N V + + +S+IL + E + ++ Sbjct: 138 -----IAEVRNNEVRRRVTILPQEVDTLANQIGSQNSQGTELNVSHILLPLPENPTQQQV 192 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 E A + LK G F ++A Sbjct: 193 DEQE----------------------------TLAKQLVGELKNGADFGKMAVTYSADSQ 224 Query: 309 DISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQE 366 + G+ I + +L + AKKGD + G+ I V++++ S VS E Sbjct: 225 ALKGGNMGWGKIEELPTLFAQALATAKKGDIVGPVRSGVGFHILKVNDLRGESKNVSVTE 284 Query: 367 VKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425 V I + ++ + +++ + G + + K S D + G Sbjct: 285 VHSRHILLKPSPILTDDQARAQLEQIAADIRSGKT--TFAAAAKQYSDDPGSANQGGDLG 342 Query: 426 KGKEVAAIPYKEQLLFRV 443 P L R+ Sbjct: 343 WTSPEVFDPAFRDALLRL 360 >gi|297205678|ref|ZP_06923074.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus jensenii JV-V16] gi|297150256|gb|EFH30553.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus jensenii JV-V16] Length = 319 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 27/195 (13%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 S + + + YK Y + K I L V + +I++ + Sbjct: 90 KVSQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQ 149 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 Q ++ + K TV+ ++ + A++ + LK G F LA++ + Sbjct: 150 EQKAWKSYQPK------VTVQHILVSKKSTAEDIIKQLKSGTSFATLAKKYSTDSATKDK 203 Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 G S + D + F L T + GY I + PS F + Sbjct: 204 GGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKMIK-HPSKGK-FSDH 261 Query: 368 KKDIANQMRITKASE 382 KK+I Q+ + + Sbjct: 262 KKEIDEQIYQSMEQD 276 >gi|320537952|ref|ZP_08037859.1| hypothetical protein HMPREF9554_02614 [Treponema phagedenis F0421] gi|320145205|gb|EFW36914.1| hypothetical protein HMPREF9554_02614 [Treponema phagedenis F0421] Length = 510 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 57/491 (11%), Positives = 149/491 (30%), Gaps = 94/491 (19%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV--PFSSFINSWKQELGMISQKIGF 73 I + + F+ + SG ++ + ++ + +++ G Sbjct: 18 IIFLFAVIAFVFIPGAGGFGRNSGLISLGTWDGIRIENTPDGLFAKQYAMISRAAEQYG- 76 Query: 74 VVNSERARSVGLDKKILDNLVSGATLD----QFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + ++ A+ +D +I+ A ++ Q + G + + P + + Sbjct: 77 LYPNDPAQREMIDYQIMHIAFQAAVIELASMQTTQKSGFVLTSDMLNKHL--IPFYSDSN 134 Query: 130 NKFSHDVFVS------RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 +S ++ + R+ +++ Y Y + L G G++ S + K Sbjct: 135 GIYSPQIYQNTSEQVKLARRKEVSDAIYSSQYFQNLFSN---GNDFSGLKMSENEVKFIK 191 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 + RS YIV+ ++ PA + ++ +++KD + Sbjct: 192 DMTKDERSFQYIVITDKVFPA------ENIVKYGKEHKDLF------------------- 226 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-KKGKKFIQLAEE 302 + + L + Q+EA + L KK F Sbjct: 227 ------------------------AVHHLSMLTYATQEEAKKVLDLLNKKETSFEDAVAT 262 Query: 303 QGKSLSDISLGSFSKE-------YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 S G + P+ + +++ +L + + + V+ G+ I Sbjct: 263 GSTKTGTDSAGKMTHSYRSDVNAMFPETTDLNAVLNL-QPQELSAVVKTGSGFAIVRCDA 321 Query: 356 IKPSFTVSF--QEVKKDIANQMRITK---ASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + F +E++ + N + + + + ++ KR + + +++ + Sbjct: 322 L--PTEPDFASEEMRTHVFNYLLNNERGIVEDYIADEAKRFVDEAKKESGFGAAAKKANL 379 Query: 411 VSIDLPLVDFAGKDV---------KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 + +V + I E F + D L Sbjct: 380 NVLTSKSFSINYGNVSVLPQLPRQSDPAFSGIERNENFFKTAFSLKEGQISDPI--LLGN 437 Query: 462 SYMWVQIKESI 472 + +++ E Sbjct: 438 QVVVLKLHEKK 448 >gi|120599971|ref|YP_964545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. W3-18-1] gi|146292095|ref|YP_001182519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens CN-32] gi|120560064|gb|ABM25991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. W3-18-1] gi|145563785|gb|ABP74720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella putrefaciens CN-32] gi|319425391|gb|ADV53465.1| outer membrane protein maturation factor, peptidyl-prolyl cis-trans isomerase, SurA [Shewanella putrefaciens 200] Length = 434 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 39/342 (11%), Positives = 105/342 (30%), Gaps = 57/342 (16%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N L ++++ L+ Q + IGL ++ I K Sbjct: 56 KAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189 S ++ EG++ +Y + + ++ ++ ++ S + + E Sbjct: 112 SVAQMQQKIESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISSLVKLIQEQGM 171 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYRAPEYKRIS------- 233 + V+Y + + + +P++ L + K +++R S Sbjct: 172 KDVEY-QIGHILIDVPNNPTSEQLEASSKRANIVLERLKNGEDFRRTAIASSSGPKALEG 230 Query: 234 ----YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQ 274 Y+ + +S + + + + E Sbjct: 231 GIWDYMNINEMPTLFAEVLSGAKTGDIIGPIKSGAGFHIIKIMDSRGLQTKEIEEVRARH 290 Query: 275 LVFP-------NQKEA--DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++ +A ++ + ++ G+ KF LA + + + G ++ I Sbjct: 291 ILLKPSPILSDDRAKAMLEQFLKQIRAGEAKFEDLARQYSEDPGSAAKGGELGWADPNIY 350 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 A ++ SLA + + G+ I + + + Sbjct: 351 VPEFAQTLSSLA-IDQISEPFRTTHGWHITQLEERRKTDATD 391 Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 104/306 (33%), Gaps = 37/306 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQA + + + L+ Sbjct: 75 RLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMSVA-------QMQQKIESEGLSF 127 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 YR + I+ + +++I++S E+ + + +E+ + + Sbjct: 128 ------SQYREQLREEITLGEIQRIQVQRRIQVSPQEISSLVKLIQEQGMKDVEYQIGHI 181 Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322 + + K A+ + LK G+ F + A + G + I + Sbjct: 182 LIDVPNNPTSEQLEASSKRANIVLERLKNGEDFRRTAIASSSGPKALEGGIWDYMNINEM 241 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRI 377 +L + S AK GD I G+ I + + + T +EV+ + + Sbjct: 242 PTLFAEVLSGAKTGDIIGPIKSGAGFHIIKIMDSRGLQTKEIEEVRARHILLKPSPILSD 301 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 +A +++ K++ A ++++R+ S D G+ +P Sbjct: 302 DRAKAMLEQFLKQI---RAGEAKFEDLARQY---SEDPGSAAKGGELGWADPNIYVPEFA 355 Query: 438 QLLFRV 443 Q L + Sbjct: 356 QTLSSL 361 >gi|242237960|ref|YP_002986141.1| nitrogen fixation protein NifM [Dickeya dadantii Ech703] gi|242130017|gb|ACS84319.1| nitrogen fixation protein NifM [Dickeya dadantii Ech703] Length = 279 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 27/227 (11%) Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT----QWFEKYKDNYRAP 227 P D ++ + R +V + ++ VL Q E AP Sbjct: 26 ALPPQHQDDFQRQLARQCRLEQAVV--EAALCQSLTVTDDVLQLIEQQLAEPLAQAGFAP 83 Query: 228 EYKRISY------ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 E ++ L + + ++ Y ++ +++ PE R L+ + Sbjct: 84 EERQAVIRHHALMELQLTWVAAQAAAPTGQDVALWYRQHADRFLRPEQRLTHHLLLTAED 143 Query: 282 EADEAFQSLK----------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328 E A + + +F +LA +L LG S+ + L S Sbjct: 144 ERTAALVRAQIRGFHRTLCREPAQFERLARRYSHCPSALEGGLLGWVSRGLLF-SELEQS 202 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 +F + ++G + + G+ + I+P + E +++ + Sbjct: 203 LF-MLREGQVSEPVETEIGWHLLWCEAIRPEAPLPESEALPKVSDYL 248 >gi|187477204|ref|YP_785228.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N] gi|122070624|sp|Q2KXA6|SURA_BORA1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|115421790|emb|CAJ48301.1| survival protein (peptidyl-prolyl cis-trans isomerase) [Bordetella avium 197N] Length = 506 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 93/318 (29%), Gaps = 53/318 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + + K+ + ++ G + + L K++L L+ Sbjct: 56 DGIAAIVNKDVITMREVQDGVKRAKVDLKER-GIQLPDDNV----LQKQVLQRLIFDRLE 110 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + +G+ D +V I NK + + + + G++ +Y + + Sbjct: 111 RQEADRLGIRVDDAQVTQAINMVAS----RNKLTPQQLRAEVEKNGLSWDDYRKSLREEI 166 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + R++D ++ ++A + + + Sbjct: 167 RTDRLR-----------------------QRTIDNHII----------ITDAEVDAYLKD 193 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 N + + + ++ ++ + SP+ V Sbjct: 194 QARNPALQPQSAQAPVQEAPAAATGPVMLALGQI----LVRVPEGASPDT------VASL 243 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDF 338 +K+A++ LK+G F +A + G + L S G Sbjct: 244 RKKAEDILARLKRGDDFASVAAASSDGPEALEGGVMGVRPIDGWPDLFVKAVSNVPAGQV 303 Query: 339 TPVIHGSFGYVIAHVSNI 356 + +I G+ I V Sbjct: 304 SGIIQSGNGFHILKVLQR 321 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 16/147 (10%) Query: 269 IRTVEQLVFPN---------QKEADEAFQSLKKG-KKFIQLAEEQGKS---LSDISLGSF 315 ++ ++ ++ Q L+ G KF +A + + LG Sbjct: 353 QTHARHILIKTSAVMSDQQARQRLEQVRQRLESGSAKFEDMARQYSQDATAPQGGDLGWV 412 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + S ++ SL K G+ + + FG+ + V + + + + Sbjct: 413 NPGEMV-PSFEAAMNSL-KPGEISQPVESPFGWHLVQVLERRQKDVTD-EMQRMQARQAL 469 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMD 402 +A ++ ++L + ++ Sbjct: 470 FERRAGPAFEDWMEQLRAQAYIDNRLE 496 >gi|308066898|ref|YP_003868503.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa E681] gi|305856177|gb|ADM67965.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa E681] Length = 310 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 94/259 (36%), Gaps = 18/259 (6%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 +EGI+E++++ K ++ M + + + + +++ Sbjct: 51 QEGISEEQWVAELKKRYGTDTLLQMLNR--KAVQAETKRLGIKITQEDLQQVLEQDSKGY 108 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPE---YKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + +F++ + + Y + + I++ E+ +E+ Sbjct: 109 DSD--------HAYFDEMQRQFGLDPVDLRNEAEYRIGLEKIATQGIQVQEAEIDEYWEQ 160 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF 315 + E++ + + L N +EA+ +K+G+ F L +E S LG Sbjct: 161 HPEEFAVGKQIQLAALYVDNAEEAEALLDRVKQGESFDVLIQEYSGKPFGKDSSGQLGWV 220 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + GD I + GY + +V +++ + Q++++ I + Sbjct: 221 DEYDPLQPEAIMKAARELSSGDVAGPISVNDGYAVIYVQDVRLKNSPDKQQIRQQIRRSL 280 Query: 376 RITKASEKVKEDYKRLEEF 394 + +A+ ++E K L + Sbjct: 281 ALAQAAP-LEEVEKSLRDK 298 >gi|319940878|ref|ZP_08015217.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis 3_1_45B] gi|319805760|gb|EFW02541.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis 3_1_45B] Length = 460 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 39/337 (11%), Positives = 89/337 (26%), Gaps = 95/337 (28%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + ++ N + L ++L+ L+S + Sbjct: 48 DRIVAVVNNDIITEHELEQRVHTVAINLRRQ-----NIQLPAMELLRAQVLERLISERAI 102 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q G+ D V + + + N S + RLA +G+N + + + Sbjct: 103 LQRARQTGIRVDDQMVNASVEQI----ARQNNLSIEELRQRLAADGVNFASFRNEIRDEI 158 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + + R V D S + + + Sbjct: 159 TTQRLRE---------------------------------REVNEKIDISESEIDAY--- 182 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++ I D+ VE ++ P Sbjct: 183 ----------------------LAEQAGIKGDDKMEY--------------HVEHILLPV 206 Query: 280 Q---------KEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327 + A+ + + G+ F LA ++ LG S +P + A+ Sbjct: 207 ETPAENDSVKTAAESLAKRARDGENFSSLAASFSRADDAMKGGDLGWRSLNDLP-ATFAE 265 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 ++ + + G V+ + + + + + Sbjct: 266 ALRANSTPGSVY-VVSSQRAWHVFKLEDKRDGVQAKL 301 >gi|254517383|ref|ZP_05129440.1| chaperone SurA [gamma proteobacterium NOR5-3] gi|219674221|gb|EED30590.1| chaperone SurA [gamma proteobacterium NOR5-3] Length = 412 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 45/363 (12%), Positives = 103/363 (28%), Gaps = 60/363 (16%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L ++ LD L+ Q G+ ++ +AR N + + F L +E Sbjct: 55 LIRETLDRLILENIQIQMGARFGVRISDAQLDQAMARIAG----QNGLTPEQFAMLLEQE 110 Query: 145 GINEKEYIDHYTKMLSRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 G + E + + + V + L ++ ++ + + +L Sbjct: 111 GRSYGEIRQNIEREMIIQRVQQGNVNQLIQISEQEIENYLSTEEGQKLVQPEYRIIHALL 170 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI---SNDELQ 254 + + A T + E + R+ E ++ D+L Sbjct: 171 PITSDTSETEV--AQSTAYCETLVERIRSGEPFDAVMASVPPQYVFSGGDLGWRKLDDLP 228 Query: 255 AEYEKNKEKYFSPE----------------------------IRTVEQLVFP-------- 278 + +++ E V ++ Sbjct: 229 SLFQEVAPTLGRGETADLFQSPSGLHIVTMADQRGGGDMTINQTKVRHILIEPSEILTDE 288 Query: 279 -NQKEADEAFQSLKKGKKFIQLAEEQ----GKSLSDISLGSFSKEYIPDVSLADSIFSLA 333 + A E + G+ F LA E G + LG S + +++ S Sbjct: 289 QARALAVELKARAEAGEDFGDLAREYSEDIGSAAEGGDLGWTSPGQMV-PEFENTMAS-T 346 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + + FG+ I V + + K + + K E++ +++ + Sbjct: 347 EINTISAPVRSQFGWHILEVLDRREKDVTE-DMRKAQVREFLHGRKYQEELDAWLRKIRD 405 Query: 394 FLA 396 Sbjct: 406 EAF 408 >gi|128298|sp|P14890|NIFM_AZOVI RecName: Full=Protein nifM gi|142367|gb|AAA64732.1| nifM protein [Azotobacter vinelandii] Length = 292 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 101/269 (37%), Gaps = 47/269 (17%) Query: 175 SNLLLDQAKRFYFENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE----- 228 S L QA R R + D ++ + + + PS L + + Y +PE Sbjct: 31 SEDQLQQADRIIGRQRHIEDAVLRSPDAIGVVIPPS--QLEEAWAHIASRYESPEALQQA 88 Query: 229 ----------YKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVE 273 + + V + EIS+ ++ Y + E++ P Sbjct: 89 LDAQALDAAGMRAMLARELRVEAVLDCVCAGLPEISDTDVSLYYFNHAEQFKVPAQHKAH 148 Query: 274 QLVF-------PNQKEA----DEAFQSLK-KGKKFIQLAEEQG---KSLSDISLGSFSKE 318 LV ++ A + + L+ K ++F + A + ++ LG Sbjct: 149 ILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGLLGEVVPG 208 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--QMR 376 + L +F +A+ G+ +PV+ G+ + + ++ P+ ++ +E+ + + Q+R Sbjct: 209 TLY-PELDACLFQMAR-GELSPVLESPIGFHVLYCESVSPARQLTLEEILPRLRDRLQLR 266 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEIS 405 KA ++ K L L +++ ++ Sbjct: 267 QRKAYQR-----KWLVCLLQQNATLENLA 290 >gi|302879437|ref|YP_003848001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] gi|302582226|gb|ADL56237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella capsiferriformans ES-2] Length = 261 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 67/156 (42%), Gaps = 5/156 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 E+ KK +++ +LQA YE K K E + ++ + EA L K KF +L Sbjct: 106 QEQLKKNPVTDAQLQAGYETLKSKLGDKEY-SARHILVATEAEARNLIAQLGKKAKFEKL 164 Query: 300 A---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A ++ G + +LG + + A+++ +L K + FG+ + + ++ Sbjct: 165 AEKSKDTGSAERGGALGWTVPKNFVEP-FANALLNLKKGEYTKDPVQTQFGWHVIKLDDM 223 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + SF E+K + +++ + + + + Sbjct: 224 RALKVPSFDEIKPQLLQRLQQQAIQKIITDLRAAAK 259 Score = 39.6 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 11/78 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + + + K L +A + L K ILD+L++ + Sbjct: 25 DKSAAVVNKVAISQERVEMNVKSALAQ-----------GQADTPELRKAILDDLINREVM 73 Query: 100 DQFIEDIGLEADHGRVWG 117 Q GL+ V Sbjct: 74 AQAATASGLDKSADVVQQ 91 >gi|153820172|ref|ZP_01972839.1| survival protein SurA [Vibrio cholerae NCTC 8457] gi|126509282|gb|EAZ71876.1| survival protein SurA [Vibrio cholerae NCTC 8457] Length = 393 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKST-------------------------------A 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ L+ G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|268682955|ref|ZP_06149817.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] gi|268623239|gb|EEZ55639.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332] Length = 357 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 31/221 (14%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + + +P +R I + +S E+ A E+ Sbjct: 142 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 201 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA Sbjct: 202 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQARNGTDFTGLARRYS 261 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 262 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 319 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++ I N +R +K + L L G +D Sbjct: 320 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 355 >gi|210620774|ref|ZP_03292241.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275] gi|210155168|gb|EEA86174.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275] Length = 339 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 115/364 (31%), Gaps = 79/364 (21%) Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91 D+ V + +K+ F+ ++ I E S K+++ Sbjct: 44 DSNIKNDSKEIVAYIDGEKLRFNEVEKRAEETF-----YIDKNNTIENLGSDTYKKELIK 98 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 +V L + ++ + + F +KF+ D + E+ Sbjct: 99 YVVYEDILYRKAKEENIHVTKQEIEDTYCSVEKF--ITSKFNLD------------DAEF 144 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + Y + +V ++ L + S++ Sbjct: 145 KNKYADD--KNKLVKSMRKSIKAYKYLDE------------------------KTRVSDS 178 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 +++ +KD +R Y+ I D K ++S +E+ Sbjct: 179 EARAYYDAHKDKFREGVYRDIFISTVDSSGK----KLSKEEID----------------- 217 Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP--DVSLADSI 329 + A+E ++ L++G KF L +E + + G + D L + I Sbjct: 218 ------NAENRANEIYRKLEEGCKFEDLEDEYSEDIEGTIPGGLGDLEMSFTDQKLRNKI 271 Query: 330 FSLAKKGD-FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 +L K G+ + ++GY I + F +VK++I + + K + ++ Sbjct: 272 STL-KVGECIEKPLRSAYGYHIIKRVGTEEE---PFDKVKEEIKSMLSYKKQIKLIESLM 327 Query: 389 KRLE 392 K Sbjct: 328 KEYN 331 >gi|71413418|ref|XP_808848.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma cruzi strain CL Brener] gi|70873138|gb|EAN86997.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative [Trypanosoma cruzi] Length = 124 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLA 326 V ++ Q A EA + + +G F +A E + S LG + + Sbjct: 35 KVKVRHILCEKQGRAMEALKKINEGSSFADIAREYSEDKARSGGDLGWKRRGEMVGP-FQ 93 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ F+L K G + SFGY I V + + Sbjct: 94 EAAFALPKGGMTPEPVRTSFGYHIILVEDKQ 124 >gi|289670942|ref|ZP_06492017.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 463 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 42/408 (10%), Positives = 105/408 (25%), Gaps = 72/408 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V S + + + + + + L +++L+ LV Sbjct: 32 DRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLPPDDV-----LQRQVLERLVLVKLQ 86 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + IA + N + D +LA +G+ ++ + Sbjct: 87 VGRADGSGIRVSDEELNRAIASI----AQQNGTTVDGLRQKLAADGMGYADFRASVRDEI 142 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL----- 213 + F + S +D + + L + + + + Sbjct: 143 IVQRLRQSFAQSRISVSEGEVD--TALAQQAATGSQYHLAHILIGLPEGATAEQIATGQK 200 Query: 214 -----TQWFEKYKDNYRAPEYK-----------RISYILFDVHEKEKKIEISN------- 250 +K + ++ A + + + D I + Sbjct: 201 KVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGWRSLDEIPNAFAQLIRDMKPGQVA 260 Query: 251 --------------DELQAEYEKNKEKYFSPEIRTVEQLVF---------PNQKEADEAF 287 E++ ++K + ++ + + D Sbjct: 261 GPLRGPSGFQLLKLVEMRDANAGGEKKMVT--EYNARHILVRVGDNQTEAQAKAKIDTIR 318 Query: 288 QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 + G F A+E + + LG F + + LA G + Sbjct: 319 ARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF-GPDFGKQVEGLA-DGAVSEPFR 376 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + S + + + + K E+ + L Sbjct: 377 TQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKLEEEYNRYLQEL 423 >gi|254480950|ref|ZP_05094196.1| SurA N-terminal domain family protein [marine gamma proteobacterium HTCC2148] gi|214038745|gb|EEB79406.1| SurA N-terminal domain family protein [marine gamma proteobacterium HTCC2148] Length = 425 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 114/404 (28%), Gaps = 59/404 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + S IS + G + E L ++ LD L+ + Sbjct: 30 DQVIAVVEDDIIMASELRERMTSVTENISTR-GVEMPPEDV----LIRETLDRLILESIQ 84 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +G+ ++ G + R N S D F L ++G + + + K L Sbjct: 85 MQKGARVGVRISDTQLNGAMQRVAA----QNGLSLDQFRMALEQQGQSYQVMREQIRKEL 140 Query: 160 SRTDVVGM-------FVGGMRPSNLLLDQAKRFYFENRSV--DYIVLNNRHVPAIADPSN 210 V + L ++ ++ + + ++ A + + Sbjct: 141 IIQRVQQGNVNQRIEITEQEVENFLATEEGQKLTQPEYQIMHALLAVSPGAPAAEVERAE 200 Query: 211 AVLTQWFEKYKDNYRAPEYKRI---------------------SYILFDVHEKEKKIEIS 249 A +T+ E+ E + + K + Sbjct: 201 AYVTRLLEEISAGAPFDEVVSAPGPYNFTGGNLGWRKLDDLPSLFSDVAPGLSKGKTTLV 260 Query: 250 NDE----LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----GKKF 296 + L ++ + V ++ +A SLK G+ F Sbjct: 261 KSDSGFHLVHMADRRGGENMMVSQTKVRHILVKPSEIMTDGQAKALVTSLKARAEDGEDF 320 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA E + + LG + ++ + G+ + + FG+ + Sbjct: 321 ADLAREYSEDIGSAQEGGDLGWTDPGQMV-PEFEQTM-QITAVGEISDPVKSQFGWHVLE 378 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 V + + K N + K E++ +++ + Sbjct: 379 VLDRRDEDMTDTAT-KNMAMNYLHNRKYQEELDAWLRQIRDEAF 421 >gi|291326505|ref|ZP_06124797.2| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM 1131] gi|291313964|gb|EFE54417.1| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM 1131] Length = 460 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 47/362 (12%), Positives = 103/362 (28%), Gaps = 59/362 (16%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ LV + Q + + V I + N + R Sbjct: 83 DDQTLRHQILERLVMDNIILQMASQMQINIPDEAVDATITDI----ARQNGLTLQQMQQR 138 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLN 198 L +GIN +Y K + +V + +D + + + L+ Sbjct: 139 LTADGINMNQYRSEIRKEMLIAEVRNNEVRRRVTILPQEVDSLAEQMSSQANYEMGVNLS 198 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250 + +P +P+ L E D A K + + + Sbjct: 199 HILIPLAENPTQEQLKT-AEALVDKILAELKKGGDFGKLAIAYSADPQALKGGNMGWSRL 257 Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFPN-- 279 EL + + + + ++ + Sbjct: 258 QELPVVFAEQLKNAKKGDVVGPIRSGVGYHILRVNDVSGGSQPISVTEVKARHILIKSSP 317 Query: 280 -QKEADE------AFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADS 328 +A Q ++ GK F A+E + G +P D + D+ Sbjct: 318 IMDDAQARQKLTKIAQEIRSGKISFEDAAKENSEDPGSALKGGELGWNMPDIYDPAFRDA 377 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + L KG+ + + +FG+ + + + + + + K + K +E+ + Sbjct: 378 LMRL-NKGELSQPVQSNFGWHLIQLEDTR-NVDKTDAAQKDQAYRLLFNRKFNEEAQSWM 435 Query: 389 KR 390 + Sbjct: 436 QE 437 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 101/312 (32%), Gaps = 39/312 (12%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 + YR+ K + +E +++ I E+ + E+ + + ++ P Sbjct: 145 NMNQYRSEIRKEMLIAEVRNNEVRRRVTILPQEVDSLAEQMSSQANYEMGVNLSHILIPL 204 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--L 325 + D+ LKKG F +LA + G+ + ++ Sbjct: 205 AENPTQEQLKTAEALVDKILAELKKGGDFGKLAIAYSADPQALKGGNMGWSRLQELPVVF 264 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD---IANQMRITKAS 381 A+ + + AKKGD I GY I V+++ S EVK I + + A Sbjct: 265 AEQLKN-AKKGDVVGPIRSGVGYHILRVNDVSGGSQPISVTEVKARHILIKSSPIMDDAQ 323 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 + ++ K +E + S ++ ++ S D G+ P L Sbjct: 324 AR-QKLTKIAQEIRSGKISFEDAAKEN---SEDPGSALKGGELGWNMPDIYDPAFRDALM 379 Query: 442 RVFGKD--DPLSKD---HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 R+ + P+ + H + L D + D+ + K Sbjct: 380 RLNKGELSQPVQSNFGWHLIQLEDTRNV-----------DKTDAAQKDQAYRLLFNRKFN 428 Query: 497 EEVSSKANQLVL 508 EE S + Sbjct: 429 EEAQSWMQEQRA 440 >gi|254483636|ref|ZP_05096858.1| PPIC-type PPIASE domain protein [marine gamma proteobacterium HTCC2148] gi|214036098|gb|EEB76783.1| PPIC-type PPIASE domain protein [marine gamma proteobacterium HTCC2148] Length = 284 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 17/168 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------- 280 E + ++ E + + S+ + K ++ PE R ++F + Sbjct: 81 EAYQRDFVFRQYRESLQTPDFSDLAQERYKLKYEKIAAIPEKRVSSHILFAVKLGSSGKR 140 Query: 281 ----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-GSFSK-----EYIPDVSLADSIF 330 +A L+ G F ++ E + G F K E + +F Sbjct: 141 EEITPKAQGVLDQLRAGADFSKMVAEYSDEPGAVEKDGKFDKWVAYGELGVSPRYTNGLF 200 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 S+A G+++ ++ FG I + I+ ++EVK DI ++ Sbjct: 201 SIASVGEYSDLVSTQFGIHIIRLDGIQEKSYKPYEEVKADIIKELEAE 248 >gi|184157913|ref|YP_001846252.1| parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii ACICU] gi|332872750|ref|ZP_08440716.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059] gi|183209507|gb|ACC56905.1| Parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii ACICU] gi|323517858|gb|ADX92239.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii TCDC-AB0715] gi|332739047|gb|EGJ69908.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059] Length = 436 Score = 78.5 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 26 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 81 LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 135 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 136 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 195 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + + V +Q + N +R P + Sbjct: 196 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 255 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 256 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 315 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G+ + FG Sbjct: 316 AGEDFAILAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 374 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 408 >gi|329888709|ref|ZP_08267307.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568] gi|328847265|gb|EGF96827.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568] Length = 313 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 64/190 (33%), Gaps = 10/190 (5%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +S ++ Y + + + E V ++ P +++AD L +G F +A ++ Sbjct: 129 AVSEQAVERLYAEQQRLARATEEVRVRLILAPTKEQADAVLGVLGQGAAFEAVAAQRSID 188 Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S LG + + +P + G I G+ + V + + Sbjct: 189 DATRYSGGDLGYSTLDVLPGPYA--AALQGQTPGAVVGPIQTETGWAVLKVEDRRVETPP 246 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 + ++ + I + + +++ + E + S+DE ++ A Sbjct: 247 TLEQARPQIVRYLTYEGVRQLLEQLRGQAEVEI----SLDEAKTAPPSAPVESAAPPAAQ 302 Query: 423 KDVKGKEVAA 432 K A Sbjct: 303 KTSASPAGNA 312 Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 8/225 (3%) Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 + +D S + V ++ + + + + + P ++ L V + + D Sbjct: 63 LIGEDDPLDASSELFRRVMDEVVDQKLLAAEAERRGLDSSPAAQRRLQAV---RERILGD 119 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 V + Q E + A ++L +V+ T E+ + VL + Sbjct: 120 MLVEKVVSGAVSEQAVERLYAEQQRLARATEEVRVRLILAPTKEQADA-----VLGVLGQ 174 Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573 G F + T + + G PI+ + V Sbjct: 175 GAAFEAVAAQRSIDDATRYSGGDLGYSTLDVLPGPYAAALQGQTPGAVVGPIQTETGWAV 234 Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 KV + +V ++ + + + + + ++ L+ Q V + Sbjct: 235 LKVEDRRVETPPTLEQARPQIVRYLTYEGVRQLLEQLRGQAEVEI 279 >gi|224824910|ref|ZP_03698016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] gi|224602581|gb|EEG08758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum 2002] Length = 244 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 62/179 (34%), Gaps = 14/179 (7%) Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ----- 280 A + ++ + + + K + ++E++ Y N +Y E+ ++ Sbjct: 50 ADQTATVAALEHLLEREVKVPQAGDEEVERHYLANPGRYTVGELVFASHILLQVTERTPI 109 Query: 281 ----KEADEAFQSLKKGKK-FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332 A+ + F +LA E + SLG + +F+ Sbjct: 110 QPLLARAEAILHQAQADASRFAELAREMSNCPSAQVGGSLGQLQRGDTV-PEFEAVLFAD 168 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G V+ +G+ I V +P + + + +A+ + S +++ +RL Sbjct: 169 GSVGVLPRVVRTRYGFHIVKVERREPGKLLPLEMARDRVASDLAEQSLSRSLQQYLERL 227 >gi|327403972|ref|YP_004344810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis DSM 16823] gi|327319480|gb|AEA43972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis DSM 16823] Length = 737 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 48/379 (12%), Positives = 115/379 (30%), Gaps = 37/379 (9%) Query: 271 TVEQLVFPNQK-EADEAFQSLK---------KGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 ++ + +A + + K F + + + G ++++ Sbjct: 366 KARHILINAPEGDAKKVASAKKLADSLVKLVNNANFAEFVTKYSEDQGSKEKGGVYEDFM 425 Query: 321 PDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIA 372 + S F++ K V+ FG+ I V + K V +D Sbjct: 426 DYEMVEPFSKFAMEKPIGTIGVVKTQFGFHIMEVMDRKAGSKFPVLAVVEKTMLPSEDTK 485 Query: 373 NQMRITKASEKVKEDYKRLE---EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 ++ KA + + + LE + D I+R+ S + + K + Sbjct: 486 ADLK-DKAYTLLAKLDRELEKKSDITDKVILFDTIARKAGYYS---RPLRMFDESPKVQG 541 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ-IKESIPARDRKLEEVLTDVKK 488 + +L + + + + + D + + + +L +V ++ Sbjct: 542 FVTKMAIQTILELAYNDEAKVGDMCSAPIQDDKRLVIAMVSSIREKGVPQLVDVYERMRT 601 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFGYD 547 D K A ++ K + N + K L ++ + + + Sbjct: 602 DAMNEKRANKILKKIGSV--------TNLEVLAKKLKTEVMNAEVTFATPSIQGGGYEPE 653 Query: 548 GISQVFSGPVEMVKCFPIENG-LSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDS 605 I +FSG ++ G V +V K V D + + + + Sbjct: 654 VIGALFSGKIKDKSSSKATVGQSGVYVIRVNKSVKAQTVTSYDAEKMQMLSQIKGSIANV 713 Query: 606 VIAYLKSQYSVTVHDNLIQ 624 L+ + +V + L+ Sbjct: 714 SRQALQKKMNVMDNRALLD 732 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 77/658 (11%), Positives = 187/658 (28%), Gaps = 86/658 (13%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN---SWKQELGMISQKIGF 73 + + F++ GL D + S S ++ + V + + + ++ ++ Sbjct: 17 ITGLALLTFILTGLFDKIGSSVESGNYGTIDGEVVDTAIYNSKLIQFQNTDRQQVEQQQQ 76 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR------------VWGEIAR 121 +++ DK V L+ E +GL + EI + Sbjct: 77 RQYNDQDAEQSADK-AWSATVDEIVLNGEYEALGLTVSEKEFTSFLFGEDGFSLIPEIQQ 135 Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYI--------DHYTKMLSRTDVVGMFVGGM 172 + F + +F+ + + + + + G Sbjct: 136 N--FSDPNTGQFNAAQLTKYIEEQEKSTDATAVANWKKTKEAIRNQRMQEKYFQFLGQGA 193 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKD--NYRAPEY 229 + L E++S+ ++V R + S+ + ++EK K+ Y+ Sbjct: 194 YVTKLEAKNEYLAKNESKSISFVVGQFREIKDEDVKVSDKEIRDYYEKNKEKPKYQVMAG 253 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + + + + + I+ N E++ K + + ++ L E + Sbjct: 254 RDVKFFDIAIEPSKSDIDTFNLEMKKI----KTAFAASTNDSLFILQNS------ELPRM 303 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 G QL +++ + D++F A G Sbjct: 304 YASGN---QLTFRPEGDAK-------ARQGMTYPVAMDTVFKTATVGQIVGPYDDKGKTR 353 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 IA V + + D K++ L S+ ++ Sbjct: 354 IAKVLGFNSTVLK-------------ARHILINAPEGDAKKVASAKKLADSLVKLVNNAN 400 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL-FRVFGKDDPLSKDHTVALPDGSYMWVQI 468 + G KG E + F F + P+ V G + +++ Sbjct: 401 FAEFVTKYSEDQGSKEKGGVYEDFMDYEMVEPFSKFAMEKPIGTIGVVKTQFG-FHIMEV 459 Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN----------FR 518 + + V+ + T ++ KA L+ + +E + F Sbjct: 460 MDRKAGSKFPVLAVVEK--TMLPSEDTKADLKDKAYTLLAKLDRELEKKSDITDKVILFD 517 Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF------SGPVEMVKCFPIENGLSYV 572 I + G + F I + V + PI++ V Sbjct: 518 TIARKAGYYSRPLRMFDESPKVQGFVTKMAIQTILELAYNDEAKVGDMCSAPIQDDKRLV 577 Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630 + V++ + + + + +M + + + + + ++ + L E Sbjct: 578 IAMVSSIR---EKGVPQLVDVYERMRTDAMNEKRANKILKKIGSVTNLEVLAKKLKTE 632 >gi|254522723|ref|ZP_05134778.1| chaperone SurA [Stenotrophomonas sp. SKA14] gi|219720314|gb|EED38839.1| chaperone SurA [Stenotrophomonas sp. SKA14] Length = 447 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 44/407 (10%), Positives = 108/407 (26%), Gaps = 70/407 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + S + + + + + L +++L+ LV Sbjct: 33 DRIAAVVDEDVILQSELQRAIANIKAQYAGRENQLPPEDV-----LSRQVLERLVLVKLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + + + N + D RLA +GI+ ++ + Sbjct: 88 VARAQSSGIRVGDQELNQAMNAI----AQQNGSTLDALRQRLAHDGIDFNDFRASVRDEI 143 Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPS----N 210 + + F + S +D Q + +V A + Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILVALPDGANADQIATGQKKA 203 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEI 269 + +K + ++ A + Y + + S DE+ + + EK E+ Sbjct: 204 DGVKALLDKGELDFNA---AAVRYSDSPNALEGGDLGWRSLDEIPQAFAQMMEKMKPGEV 260 Query: 270 ------------------RTVE--------------QLVF---------PNQKEADEAFQ 288 R ++ + + D Sbjct: 261 VGPIRGPSGFQLLKLVDVRDASATAGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRA 320 Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + G F +A+E + + LG F + + + L + G + Sbjct: 321 RIAGGADFETVAKESSEDNNSKGQGGDLGWFPADAF-GPAFGQQVSGL-QDGGVSQPFRT 378 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + + + + + K ++ + L Sbjct: 379 DAGWHIVQRVATRQTDVTN-DNQRAQVRETIGRRKLEDEYNRFLQEL 424 Score = 54.6 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 55/393 (13%), Positives = 119/393 (30%), Gaps = 51/393 (12%) Query: 142 AREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + ++ + +L + V G+R + L+QA + L Sbjct: 63 RENQLPPEDVLSRQVLERLVLVKLQVARAQSSGIRVGDQELNQAMNAIAQQNGSTLDALR 122 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 R D ++ +RA I+ + +I +S E+ A + Sbjct: 123 QRLAHDGIDFND-------------FRASVRDEITVQRLRQSFAQSRISVSEGEVDAALK 169 Query: 259 KNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGK-KFIQLA---EE 302 + + ++ QK+AD L KG+ F A + Sbjct: 170 QQA---TVGNQYHLAHILVALPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSD 226 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +L LG S + IP + A + + K G+ I G G+ + + +++ + Sbjct: 227 SPNALEGGDLGWRSLDEIP-QAFAQMMEKM-KPGEVVGPIRGPSGFQLLKLVDVRDASAT 284 Query: 363 SFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + + I ++ + K L +A G + +++ + Sbjct: 285 AGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRARIAGGADFETVAKESSEDN----- 339 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 + G+ A + +V G D G ++ ++ D Sbjct: 340 -NSKGQGGDLGWFPADAFGPAFGQQVSGLQDG-GVSQPFRTDAGWHIVQRVA--TRQTDV 395 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + V++ K +E + +L E Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEA 428 >gi|251794109|ref|YP_003008840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] gi|247541735|gb|ACS98753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp. JDR-2] Length = 324 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 17/243 (6%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I ++ + + + M V Q E +++ + Sbjct: 73 ITAEDLAEQLKRQYGDNVLRTMMVHKAIDLEAEAQQLSLSSEEEERELTSMMDGYDSEEV 132 Query: 206 ADPSNAVLTQWFEKYKDNY---RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 ++E KD ++ + + Y L + +S E++ + E Sbjct: 133 ----------FYEVMKDQLGMTKSDVEEDVKYRLLLEKIAILTVNLSEVEIENYIAAHPE 182 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 ++ V+ +V +KEAD+ L G F QLA E K + G D Sbjct: 183 QFADRLRLHVQWIVTDTEKEADDVLDKLTAGDSFEQLALEYSKDANTSDAGGDLGLIDSD 242 Query: 323 VSLADS----IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 D+ S + G+ T I GY + V + + +S + ++ ++ Sbjct: 243 DPFYDAEMMEEASRLQTGESTGPIKVPEGYAVIRVLERQKTEGLSGHVLYDTARKELALS 302 Query: 379 KAS 381 KA Sbjct: 303 KAK 305 >gi|311748699|ref|ZP_07722484.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1] gi|126577231|gb|EAZ81479.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1] Length = 666 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 40/359 (11%), Positives = 106/359 (29%), Gaps = 51/359 (14%) Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L+ ++ + ++G++ + + + L + + Sbjct: 75 LNQFINYKLKVREAVELGMDESQEFLMEF----------------ESYKENLKAPYLIKN 118 Query: 150 EYID-HYTKMLSRTDVV---GMFVGGMRPSNLLLDQAKRFYFENRSVDYIV----LNNRH 201 + K SR V + P+ D + D I +N Sbjct: 119 SLEEGELRKAYSRMQEVVRASHILFQFPPNASQEDSLSVLRMALKVKDQIENGGDINELA 178 Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE---YE 258 + DPS K + ++ D + ++S+ + Sbjct: 179 LEYSEDPSAKQ-------NKGDLGYFTALQMVQPFEDAAFSLQAGQVSDPVMTNFGYHII 231 Query: 259 KNKEKYFSPEIRTVEQLVF---PNQKEADEAFQSL---------KKGKKFIQLAEEQGKS 306 K +K +P V ++ + A++ + K+ + + + + Sbjct: 232 KVLDKRPNPGQVRVSHILVRIDADDPNAEDLARRKVADIYTEIQKENTVWENIVKNYSED 291 Query: 307 LSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + G + + FSL + G+ +P + +GY I + + KP S Sbjct: 292 PASSQNGGMLPWFSVGSMIPEFEMAAFSLTEIGEVSPPVKTKYGYHILRLEDKKPID--S 349 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422 F+++++ I +++ S ++ +++ + + + G Sbjct: 350 FEDLEESIRSRIMRDSRSTMIQSQVMAIQKSRYSFDENETSIGNLESELKTFTQIQLPG 408 >gi|121997086|ref|YP_001001873.1| NifZ family protein [Halorhodospira halophila SL1] gi|121588491|gb|ABM61071.1| NifZ family protein [Halorhodospira halophila SL1] Length = 321 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQSLKKGKK- 295 ++++++ Y +N E++ E RTV L+ A++ L + Sbjct: 152 TDEDVERFYHENPERFRRDETRTVRHLLITINDDFPENTRQRAWARAEKLTGKLAADPRG 211 Query: 296 FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F AE +L +G + + + L ++F +A G+ + + G + Sbjct: 212 FAAAAERHSECPSALHGGLVGRVPRGQLHE-ELDAALFEMA-AGEVRGPVETAMGLHVLL 269 Query: 353 VSNIKPSFTVSF-QEVKKDIANQMRITKASEKVKEDY 388 I P E+++ I ++ +A + ++ Sbjct: 270 CETIHPPDVAPLDDELRERIRGALQEQRARQVQRDRA 306 >gi|282851249|ref|ZP_06260614.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1] gi|282557217|gb|EFB62814.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1] Length = 303 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G + S + ++ IV + + + + + + KYK Y + Sbjct: 41 GKITESQYYNKMKESQAGQSTLASMIVSDALESQYGKEVTQKQVDKEYNKYKKQYGSQFD 100 Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280 + + ++ ++ L+ EK K + PE+ TV+ ++ + Sbjct: 101 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 159 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335 A++ + LK G F +LA++ L +F S + D S + F L Sbjct: 160 STAEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 219 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 T + +GY + + IK + +E KK I NQ+ + + ++ Sbjct: 220 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 265 Score = 45.8 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 23/174 (13%) Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVK----TAEEVSSK--ANQLVLEYSKEGKNFRDI 520 IK+ PA+++ K WK + + SK + +++ K+G +F+ + Sbjct: 129 HIKKITPAQEK----------KAWKNYQPEVTVQHILVSKKSTAEDIIKQLKDGGDFKKL 178 Query: 521 GKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 K T N + D+ + + F + P++ Y V K+ Sbjct: 179 AKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMI 238 Query: 578 N--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 +K + K + + + Q M++D ++ SVIA + + V++ D ++ L Sbjct: 239 KHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADVSIKDKDLKNVL 292 >gi|196232957|ref|ZP_03131806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter flavus Ellin428] gi|196222935|gb|EDY17456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter flavus Ellin428] Length = 136 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 6/109 (5%) Query: 290 LKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 +KKG+ F +LA+E + S L F KE + +++ F + KKG+ + + Sbjct: 1 MKKGEDFGKLAQEISEDPSAKENKGDLDFFRKEAMV-PEFSNAAFGM-KKGEISDPVRSD 58 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 FG+ + V++ K + TV+ ++ K + ++ K V+E K + E Sbjct: 59 FGFHVIKVTDRKDAETVTLEKAKPQLLAFLKNQKKQAAVEEVIKGVREK 107 >gi|325270105|ref|ZP_08136712.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM 16608] gi|324987406|gb|EGC19382.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM 16608] Length = 715 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 63/374 (16%), Positives = 119/374 (31%), Gaps = 38/374 (10%) Query: 262 EKYFSPEIRTVEQLVFPN------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ + +AD ++L G F LA+ G++ F Sbjct: 353 SKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT---GEKVWF 409 Query: 316 SKEYIPDVSLADS-----IFSLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVK 368 + + I +L GD + + G VI V + K + V Sbjct: 410 TGQQYESAPTMSQDNRTYINALL-NGDVNATQNIALAQGNVILQVLDKKAMTAKTTAAV- 467 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 I + +KA+ V Y + EF+A T+ D+I + + ++ Sbjct: 468 --IKKVIDFSKATRSV--AYNKFSEFVAKNTTADDIEKNASKSGYRVQSLNDISTAEHY- 522 Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488 VA I L +F + + + + P R ++ VK+ Sbjct: 523 -VAGIHGTRDALKWLFDAKQGDVSPLYECGDNDHLLVIVLNAIHPQGFRAWDD--AQVKE 579 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFF 544 K E + K +L++ K G + + GA + T NQI Sbjct: 580 ILKR----EVMKDKKAELLMAKLK-GVSSIAAARAKGAKVSTVNQITFASPAFVQATGAV 634 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQMMNKDL 602 V + P++ VF+V + G + + Q + + Sbjct: 635 EPALSGAVAATAAGKFSKAPVKGNAGVYVFQVVKKAMRAGSKCNELMVMQQTAQQNMQ-M 693 Query: 603 LDSVIAYLKSQYSV 616 + + + L + +V Sbjct: 694 VGNFMQDLILKANV 707 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 82/640 (12%), Positives = 188/640 (29%), Gaps = 81/640 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L IR S+ + + + FL + S +G + + +K+ + Sbjct: 4 LGKIR--SKGGLLVTAIGLALFAFL---AEEGFRSCNGIKGEARQQIGEILGEKISVQDY 58 Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + I ++ E + ++ LVS L E +GL + Sbjct: 59 QKLIDEYQSAIKFTMQRDNLSEEELNQ--VKDQVWQQLVSNRVLQADAEKVGLTVTEQEI 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 +A++P + + +F + L G ++ + Sbjct: 117 QNVLNDGTNPMLAQTPFVNQQTGRFDVNALKQFLD--GYSKAKSEKS-----------PQ 163 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + L K + Y L V + + + Sbjct: 164 LDQMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNN------- 213 Query: 228 EYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSP-EIRTVE----QLVFPNQ- 280 E ++ + I+I++ +L+A+Y++ K + E R ++ Q+ Sbjct: 214 EESQVQLASLSYSSVKDADIKITDADLKAKYDELKPAFRQNVETRDIKFVDYQIKASTAD 273 Query: 281 -----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 KE + + L + + G + + + SK Y +A I SLA Sbjct: 274 RNAVVKEMNGLQKQLAAAADPAMVISKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVG 333 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 I V + + ++ + +++ L Sbjct: 334 TTGVTENKQDNTLNIIRVLS--KAQLPD----SVQFRQIQVAANTPDEARAKADSIQKAL 387 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G + +++R + + Y LL + ++ Sbjct: 388 AGGADFEALAKRYGQTGEKVWFTGQQYESAPTMSQDNRTYINALL------NGDVNATQN 441 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 +AL G+ + +Q+ + + V+ V ++ S A E+ + Sbjct: 442 IALAQGN-VILQVLDKKAMTAKTTAAVIKKVIDF------SKATRSVAYNKFSEFVAKNT 494 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEMVKCFPIENGLS 570 DI KN S +N + + D + +F V Sbjct: 495 TADDIEKNASKSGYRVQSLNDISTAEHYVAGIHGTRDALKWLFDAKQGDVSPLYECGDND 554 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 +++ V N+ + P + + + +++ ++++ A L Sbjct: 555 HLLVIVLNA-IHPQGFRAWDDAQVKEILKREVMKDKKAEL 593 >gi|302345884|ref|YP_003814237.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC 25845] gi|302149581|gb|ADK95843.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC 25845] Length = 474 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 69/192 (35%), Gaps = 21/192 (10%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEIRT 271 + + + D + + + +SY V E + Y E ++ + + Sbjct: 70 VQAALDAHLDTLSSFKKEFLSYRNQQVRPTFITDADVEAEGRKLYREAQQQVEANGGMWN 129 Query: 272 VEQLVF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----F 315 ++ ++ AD + +L+ G F +LA++ ++ G Sbjct: 130 CAHILIGLYQNADKEAAEAAKQLADSLYNALRGGADFAELAKKYSTDVNSAMNGGQLLHL 189 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 K ++F+L K G+ + + FGY I + + +++ ++ +I + Sbjct: 190 QKGQTV-PEFEKALFAL-KPGEISAPVLSPFGYHIIKMGGRE--SFPTYETLRPEIMQYI 245 Query: 376 RITKASEKVKED 387 + E++ + Sbjct: 246 EMQGLREQIIDQ 257 >gi|193083971|gb|ACF09646.1| peptidyl-prolyl cis-trans isomerase ppiC [uncultured marine crenarchaeote AD1000-56-E4] Length = 91 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSI 329 ++ Q +A + + +KKGKKF +A E S D LG F+K + + Sbjct: 8 SHILVEKQSQALQLLEEIKKGKKFGAVAREVSTCPSSKKDGDLGYFTKGMMVK-EFDEVA 66 Query: 330 FSLAKKGDFTPVIHGSFGYVIAH 352 F L + G+ + + FGY + Sbjct: 67 FKL-QIGEVSEPVKTQFGYHLIK 88 >gi|262403929|ref|ZP_06080486.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586] gi|262349891|gb|EEY99027.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586] Length = 431 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R + + L+ + E ++ ++ A ++A + Sbjct: 131 -REQIRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|332305313|ref|YP_004433164.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172642|gb|AEE21896.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 431 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 44/362 (12%), Positives = 125/362 (34%), Gaps = 62/362 (17%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L + ++ L+ + Q + +G++ ++ I +++ + + LA E Sbjct: 66 LRTQAIERLIVDSLQSQMADRMGIQISDPQLDQTIDNI----AREDGTTVEQLRQSLASE 121 Query: 145 GINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLNNRH 201 G++ + Y + K L +V + + + + E + +Y L + Sbjct: 122 GVSFEVYREQVRKELISGEVRRANVRRRIYITPQEISNLVKLIDEQGGQQAEYH-LGHIL 180 Query: 202 VPAIADPSNAVLTQWFE---------KYKDNY-----------RAPEYKRISYILFDVHE 241 + +P++A +++ + + +A E + ++ + Sbjct: 181 IGFPPEPTDADVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP 240 Query: 242 KEKKIEI---SNDEL------------QAEYEKNKEKYFSPEIRTVEQLVFP-----NQK 281 + S D+L + + ++ + + Sbjct: 241 TLFAEAVQGTSKDDLIGPIRSGAGFHVLKIIDIRGIEKVEVAELKSRHILIKPSVILSDE 300 Query: 282 EADEAF-----QSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +A++ Q L F +LA+E G +L LG + + + D++ L Sbjct: 301 KAEKMLIEFRKQLLAGEADFAELAKEHSADPGSALRGGDLGW-ADPNVYVPAFRDTLQKL 359 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRL 391 + G+ + + + G+ + + + + ++ K+D A Q+ + +E+ + K + Sbjct: 360 -EVGEISQPVRSTHGWHLMQLMDKRVQDAT--EKRKEDKAYQLLFQRKFAEETEAWLKEM 416 Query: 392 EE 393 + Sbjct: 417 RD 418 Score = 62.3 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 28/244 (11%) Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------ 277 YR K + ++I I+ E+ + E+ + ++ Sbjct: 128 YREQVRKELISGEVRRANVRRRIYITPQEISNLVKLIDEQGGQQAEYHLGHILIGFPPEP 187 Query: 278 ------PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328 + A++ + L G +F ++A K+L LG + +P A++ Sbjct: 188 TDADVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP-TLFAEA 246 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEK 383 + +K D I G+ + + +I+ V E+K I + KA + Sbjct: 247 VQGTSKD-DLIGPIRSGAGFHVLKIIDIRGIEKVEVAELKSRHILIKPSVILSDEKAEKM 305 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + E K+L LA E+++ S D G +P L ++ Sbjct: 306 LIEFRKQL---LAGEADFAELAKEH---SADPGSALRGGDLGWADPNVYVPAFRDTLQKL 359 Query: 444 FGKD 447 + Sbjct: 360 EVGE 363 >gi|260592565|ref|ZP_05858023.1| peptidyl-prolyl cis-trans isomerase [Prevotella veroralis F0319] gi|260535611|gb|EEX18228.1| peptidyl-prolyl cis-trans isomerase [Prevotella veroralis F0319] Length = 715 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 84/661 (12%), Positives = 198/661 (29%), Gaps = 83/661 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L IR S+ + + + FL +A S +G + + +K+ + Sbjct: 4 LGKIR--SKGGILVAAIGLALFAFL---AEEAFRSCNGIKSETRQQIGEILGEKISVQDY 58 Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + I + + ++ LV+ L+ + +GL + Sbjct: 59 QKLIDEYQSAIKFTMQRDNLTENELNQ--VKDQVWQQLVNNRVLEADAKKVGLTVTEQEL 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 +A++P + + +F + L G N+ + + L + + Sbjct: 117 SNVLNDGTNPMLAQTPFVNQQTGRFDINALQQFLD--GYNKAK--ASNSPQLEQMQTIY- 171 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + L K + Y L V + + + Sbjct: 172 --------DYWLFVEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNN------- 213 Query: 228 EYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEA-- 283 E I + +++++++L+A+YE+ K + E R ++ + + + A Sbjct: 214 EESEIQLASLAYSTIKDADVKVTDEDLKAKYEELKPAFRQNTETRDIKFVDYQIKASASD 273 Query: 284 --------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + + L + + G + + L SK Y +A I SLA Sbjct: 274 RNAIVKDMNALQKQLATATDPSMVISKSGSMIPYLGLPVSSKAYQQYPDIASKIDSLAVG 333 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 I V + + E+ +++ L Sbjct: 334 TTGVTENKQDNTLNIIRVMS--KAQLPD----SVQFRQIQVAANTPEEAHAKADSIQKAL 387 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A G I++R + + Y E LL + ++ Sbjct: 388 AGGADFVAIAKRYGQTGEKVWFTGQQYEVAPSMSEDNRTYIEALL------NGEVNAIQN 441 Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515 VAL G+ + +Q+ + + + ++ + K ++ +K ++ V + + Sbjct: 442 VALTQGNII-LQVVDKKAMKTKTTAAIIKKLIDFSKATRSD--AYNKFSEFVAKSATA-A 497 Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCF---PIENGLS 570 + G + + N ++ ++ D + +F V + L Sbjct: 498 DLEKNASKYGYHVQSLNDVSTSEHYVAGVHGTRDALKWLFDAKQGDVSPLYECGDNDHLM 557 Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL-DSVIAYLKSQYSVTVHDNLIQRYLDG 629 +V + K + + L + + KD + ++A LK V+ + Sbjct: 558 VIVLSAIHPKGYRSWDDPQVKEILKREVIKDKKAEKLMAKLKG-----VNSIAAAQAKGA 612 Query: 630 E 630 + Sbjct: 613 K 613 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 51/330 (15%), Positives = 106/330 (32%), Gaps = 27/330 (8%) Query: 262 EKYFSPEIRTVEQLVFPNQ------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ +AD ++L G F+ +A+ G++ + Sbjct: 353 SKAQLPDSVQFRQIQVAANTPEEAHAKADSIQKALAGGADFVAIAKRYGQTGEKVWFTGQ 412 Query: 316 SKEYIPDVSLADSIF-SLAKKGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIA 372 E P +S + + G+ + + + G +I V + K T + + I Sbjct: 413 QYEVAPSMSEDNRTYIEALLNGEVNAIQNVALTQGNIILQVVDKKAMKTKTTAAI---IK 469 Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + +KA+ + Y + EF+A + ++ + + ++ VA Sbjct: 470 KLIDFSKATR--SDAYNKFSEFVAKSATAADLEKNASKYGYHVQSLNDVSTSEHY--VAG 525 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 + L +F + M + + P R ++ VK+ K Sbjct: 526 VHGTRDALKWLFDAKQGDVSPLYECGDNDHLMVIVLSAIHPKGYRSWDD--PQVKEILKR 583 Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFFGYDG 548 + KA +L+ + +G N + GA + T +QI Sbjct: 584 EVIKD---KKAEKLMAKL--KGVNSIAAAQAKGAKVSTVSQITFAAPAFVQATGSAEPAL 638 Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 V + P++ VF+V Sbjct: 639 SGAVAATAAGKFSKNPVKGNAGVYVFQVVK 668 >gi|284035739|ref|YP_003385669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale DSM 74] gi|283815032|gb|ADB36870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale DSM 74] Length = 797 Score = 78.1 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 86/275 (31%), Gaps = 25/275 (9%) Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV-- 192 + + +LA+ + +K ++ + + + Q +++ Sbjct: 98 NTYRKQLAQSYLTDKVLVESLAAEAYQRMQEDVNASHIFIPVSEYAQPSDTLVAYQTIMS 157 Query: 193 -DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS-N 250 L +A ++ + + + Y L IS Sbjct: 158 LRKQALEGTDFTKLARENSKDVKT--AQNGGSLGYIAAFENVYPLETAAYTTPVNGISMP 215 Query: 251 DELQAEYEKNKEKYFSP--EIRTVEQLVFPNQKEADEA------------FQSLKKGKKF 296 + Y K P V ++ ADEA + L++G+ F Sbjct: 216 VRTRFGYHILKVNNRRPSRGRVRVAHILVRMSPAADEAGQKAAQERINKVYAQLQRGESF 275 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 Q+ + + G + P + D+ F+L+K GD++ + ++G+ I + Sbjct: 276 EQVCRLVSDDATSKANGGVLPPFEPGRWVPAFEDAAFALSKPGDYSKPVKTNYGWHIIKL 335 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 K SF + + ++ ++ +++ Sbjct: 336 IERK--GLESFTTLAPSLRQRVTTDSRADMLRQVT 368 Score = 38.4 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 11/173 (6%) Query: 462 SYMWVQIKESIPARDRKLEEVLTD---VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518 Y +++ P+R R V V+ + ++ + + V + G++F Sbjct: 221 GYHILKVNNRRPSRGR----VRVAHILVRMSPAADEAGQKAAQERINKVYAQLQRGESFE 276 Query: 519 DIGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 + + + + + E + F+ P++ + + K+ Sbjct: 277 QVCRLVSDDATSKANGGVLPPFEPGRWVPAFEDAAFALSKPGDYSKPVKTNYGWHIIKLI 336 Query: 578 NSKVGP--VQEKDKFISYLTQMMNKDLLDSV-IAYLKSQYSVTVHDNLIQRYL 627 K +T D+L V + L+ +Y V L+ + Sbjct: 337 ERKGLESFTTLAPSLRQRVTTDSRADMLRQVTVQRLQKEYPVQTDQPLLAIAI 389 >gi|114776872|ref|ZP_01451915.1| Parvulin-like peptidyl-prolyl isomerase [Mariprofundus ferrooxydans PV-1] gi|114552958|gb|EAU55389.1| Parvulin-like peptidyl-prolyl isomerase [Mariprofundus ferrooxydans PV-1] Length = 92 Score = 78.1 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 T ++ + + + ++ G F ++A+E S LG F + Sbjct: 5 TARHILVDTEAQCEALKAEIEGGADFAEVAKEHSSCPSGRNGGDLGEFGPGMMV-PEFDK 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +FS A+ G + FGY + V++ Sbjct: 64 VVFS-AEVGTVQGPVKTQFGYHLLEVTSR 91 >gi|158423053|ref|YP_001524345.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium caulinodans ORS 571] gi|158329942|dbj|BAF87427.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium caulinodans ORS 571] Length = 304 Score = 78.1 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 13/162 (8%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----- 282 E + + I + ++ + E L+ Y+ N+ ++ S + E ++ ++E Sbjct: 108 ETEEEALIRALLAQEVRTPEADEAALRRFYDNNRRRFLSAPLWEAEHILCAARREDAVAF 167 Query: 283 ------ADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAK 334 A L ++F +LA Q S GS + D + ++ Sbjct: 168 PAARERAQTLAAVLARAPERFAELARAQSDCPSAGVGGSLGQIGPGDTTPEFEAALKALT 227 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 G + + +G + V+ T+ F+ V+ IA + Sbjct: 228 PGVISEPVETRYGVHLIRVNRHVDGRTLPFEAVRDQIAAYLA 269 >gi|299770418|ref|YP_003732444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1] gi|298700506|gb|ADI91071.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1] Length = 436 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 48/405 (11%), Positives = 117/405 (28%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 26 FAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 80 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L + Y Sbjct: 81 LREAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--MAPGTYESL 135 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + + ++ S+ ++ Q + V ++ + + Sbjct: 136 RGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRITGDNPQE 195 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + V ++ + N +R P + Sbjct: 196 VQSVAQEVRSKLAQSNDINVLKKLSTANAKVDGADMGFRPLSDIPAELAARITPLQEGQT 255 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 256 TDLISVRDGVHVLKLIERKQNEQKALVPQYQTRHILIQPSEVVSLDNAKQIIDNIYKRLK 315 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G F LA + G + SLG + + + + G+ + FG Sbjct: 316 AGDDFATLAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 373 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V+ + KD+ ++ + A + + E E Sbjct: 374 WHILQVTEKRE----------KDMTHEYQERMARQILGERQFNTE 408 Score = 45.8 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 43/288 (14%) Query: 143 REGINEK--EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 ++G+ E E ++ + + + + L+Q K++ D LN Sbjct: 48 QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGI---KPDEKSLNEA 104 Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKR---------ISYILFDVHEKEKKIEISND 251 + + + L + + K + AP ++ + +I+IS+ Sbjct: 105 VLKVASQSGSKSLEAF--QQKLDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQ 162 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +++ + + + V + Q A E L + L ++ Sbjct: 163 DVENFLKSPQGQAALGNQAHVIHMRITGDNPQEVQSVAQEVRSKLAQSNDINVL-KKLST 221 Query: 306 SLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN--------- 355 + + + + D+ + + ++G T +I G + + Sbjct: 222 ANAKVDGADMGFRPLSDIPAELAARITPLQEGQTTDLISVRDGVHVLKLIERKQNEQKAL 281 Query: 356 ----------IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS K+ I N + KA + Sbjct: 282 VPQYQTRHILIQPSEVVSLDNAKQIIDNIYKRLKAGDDFATLAATYSN 329 >gi|153217229|ref|ZP_01950993.1| survival protein SurA [Vibrio cholerae 1587] gi|153830824|ref|ZP_01983491.1| survival protein SurA [Vibrio cholerae 623-39] gi|229519985|ref|ZP_04409414.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM 11079-80] gi|229525138|ref|ZP_04414543.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv. albensis VL426] gi|124113752|gb|EAY32572.1| survival protein SurA [Vibrio cholerae 1587] gi|148873683|gb|EDL71818.1| survival protein SurA [Vibrio cholerae 623-39] gi|229338719|gb|EEO03736.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv. albensis VL426] gi|229342934|gb|EEO07923.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM 11079-80] Length = 431 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|125972872|ref|YP_001036782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum ATCC 27405] gi|256005741|ref|ZP_05430696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum DSM 2360] gi|281417071|ref|ZP_06248091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum JW20] gi|125713097|gb|ABN51589.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum ATCC 27405] gi|255990314|gb|EEU00441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum DSM 2360] gi|281408473|gb|EFB38731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum JW20] gi|316940891|gb|ADU74925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium thermocellum DSM 1313] Length = 463 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 114/306 (37%), Gaps = 37/306 (12%) Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q ++ G +A ++ G + + + NKF + + +N+ E D + Sbjct: 38 QESKEFGFQA--LKINGTYVSTDIMKEERNKFF-EKYKRNADVLRMNDHERNDMLLDQVI 94 Query: 161 RTDVVGMFVG---GMRPSNLLLDQAKRFYFENRSVDYI-VLNNRHVPAIADPSNAVLTQW 216 ++ +V G+ ++ ++ + + R D + + + A + ++ Sbjct: 95 ERLLLEDYVNNKSGVTATDSEVEDYINRFIKPRYGDSLGTFMSSQGYTNEEEMKAGIKEY 154 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 K+K Y+ KEK + ++ EL YEK+K + +IR + Sbjct: 155 ILKHKALYK--------------AAKEKNVTLTEQELDEGYEKHKIQNKKVDIRHIFISS 200 Query: 277 -----FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS---KEYIPDVSLADS 328 +K ADE + LK + F LA++ G + + ++ Sbjct: 201 QERGKEEAKKLADEIYNRLKNNEDFETLAKQYSDDEKTKESGGVITELRAGFNEAVFDNA 260 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK--ASEKVKE 386 +F+ A+ G I + GY I +V + F + + A + + K S+ KE Sbjct: 261 VFT-AEAGQLLEPIEVARGYEIVYVDKVT-----DFYRTRDEYAELLTVDKFMQSDAYKE 314 Query: 387 DYKRLE 392 ++ + Sbjct: 315 WFEEYK 320 >gi|90424410|ref|YP_532780.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] gi|90106424|gb|ABD88461.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris BisB18] Length = 347 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 17/166 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + L DELQ Y+ N+ P + Q+ K+AD+A Sbjct: 153 ESALVELYLQSASTPPTNFP-GEDELQKVYDANRSALLVPRQFQLAQIFVAAPKDADKAT 211 Query: 288 QSLKK-------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 + G F +A E + LG ++ I + + +AK Sbjct: 212 EDNANKSLNEIQRQLKTPGADFAAIANENDGK-NSGDLGWLAENQI-RPEIRAQLMGMAK 269 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + G+ I + + K ++T + EV+ + QMR +A Sbjct: 270 N-AISDPVRLDDGWHILKLIDTKAAYTRTLPEVRDQLIQQMRAERA 314 >gi|268597648|ref|ZP_06131815.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19] gi|268551436|gb|EEZ46455.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19] Length = 333 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 31/221 (14%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + + +P +R I + +S E+ A E+ Sbjct: 118 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 177 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA Sbjct: 178 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQARNGTDFTGLARRYS 237 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 238 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 295 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++ I N +R +K + L L G +D Sbjct: 296 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 331 >gi|186475166|ref|YP_001856636.1| SurA domain-containing protein [Burkholderia phymatum STM815] gi|184191625|gb|ACC69590.1| SurA domain protein [Burkholderia phymatum STM815] Length = 463 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 46/415 (11%), Positives = 119/415 (28%), Gaps = 76/415 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + ++Q+ + +++ L +++L+ +V Sbjct: 43 DTIAAVVNNGVITQRELDMRVGLITKRLNQQHAPIPPADQ-----LRQQVLNQMVLERIQ 97 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ D V + R + N D++ +R+ +G+ ++ L Sbjct: 98 LQKAREDGITVDDATVQRTLERL----AQANNLQLDMYRARIEAQGVPWTTFMGDAKTEL 153 Query: 160 SRTDVVGMFVGG-MRPSNLLLDQAKRFYFENR----------SVDYIVLNNRHVPAIADP 208 + + V + S+ + + R +++I L + D Sbjct: 154 ILSRLREKEVDSKVTVSDAEV---ANYIASQRGPTAGLASDLHLEHIFLKAPLNASQTDI 210 Query: 209 SNAVLTQ---------------WFEKYKDN----------YRAPEYKRISYILFDVHEKE 243 A + ++AP ++ + Sbjct: 211 EAAQAKANALLQEALKGDNFGKLAKSNSQAPDASKGGDLGFQAPSRLPAEFVTAAATLRP 270 Query: 244 KKIEISNDELQAEYE-----KNKEKYFSPE-------IRTVEQLVF---------PNQKE 282 ++ S +E + + S V ++ +++ Sbjct: 271 GQVNPSVIRTNDGFEIVRLVERRSGQGSASADSTKLVQTHVRHILLRVGDGMSEPQARQK 330 Query: 283 ADEAFQSLKKGK-KFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 E Q ++ G+ F + A + G + LG S ++ SL + Sbjct: 331 LLEIRQEIEAGQGDFDKFARTYSQDGSASQGGDLGWISPGETV-PEFERAMNSL-QDNQI 388 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + +GY + V + + S + + KA + + + L + Sbjct: 389 SQPVRSEYGYHLIQVLGRREAEG-SVSQQMDLARQAIGQRKAEQAYADWLRELRD 442 Score = 51.1 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 86/296 (29%), Gaps = 45/296 (15%) Query: 152 IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 D + + V+ R + +D A R L A Sbjct: 80 ADQLRQQVLNQMVLERIQLQKAREDGITVDDATVQRTLERLAQANNLQLDMYRARI---E 136 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEKYFSPEI 269 A W + + E + K+ +S+ E+ + Sbjct: 137 AQGVPW-----TTFMGDAKTELILSRLREKEVDSKVTVSDAEVANYIASQRGPTAGLASD 191 Query: 270 RTVEQL------------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGS 314 +E + + Q +A+ Q KG F +LA+ ++ LG Sbjct: 192 LHLEHIFLKAPLNASQTDIEAAQAKANALLQEALKGDNFGKLAKSNSQAPDASKGGDLGF 251 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + +P + +L + G P VI + G+ I + + + + K + Sbjct: 252 QAPSRLP-AEFVTAAATL-RPGQVNPSVIRTNDGFEIVRLVERRSGQGSASADSTKLVQT 309 Query: 374 QMR-----------ITKASEKVKEDYKRLE------EFLALGTSMDEISRREKIVS 412 +R +A +K+ E + +E + A S D + + + Sbjct: 310 HVRHILLRVGDGMSEPQARQKLLEIRQEIEAGQGDFDKFARTYSQDGSASQGGDLG 365 >gi|325139171|gb|EGC61717.1| PPIC-type PPIASE domain protein [Neisseria meningitidis ES14902] Length = 408 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 38/356 (10%), Positives = 98/356 (27%), Gaps = 90/356 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 131 SDGIAAVADNEVITRRRLAEAVSEAKANLPK-------DAQISESELSRQVLMQLVNQSL 183 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + D + Sbjct: 184 IVQAGKRRNIQASEAEIDAVVAKNPALKN------------------LSPAQRRDFADNI 225 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 226 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 271 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + E + ++ Y Sbjct: 272 QH---------------ILIKADSENAAVGAESTIRKIY--------------------- 295 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + + S LG F+ + + +++ +L K Sbjct: 296 ---------GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 344 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + FG+ I ++ ++ + T + ++ + + KA + + L Sbjct: 345 GQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 399 >gi|325131574|gb|EGC54281.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis M6190] Length = 405 Score = 77.7 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 38/356 (10%), Positives = 98/356 (27%), Gaps = 90/356 (25%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 + + + + + + + L +++L LV+ + Sbjct: 128 SDGIAAVADNEVITRRRLAEAVSEAKANLPK-------DAQISESELSRQVLMQLVNQSL 180 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 + Q + ++A + +A++P ++ + D + Sbjct: 181 IVQAGKRRNIQASEAEIDAVVAKNPALKN------------------LSPAQRRDFADNI 222 Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 ++ + R S +D L I P A L Q+ Sbjct: 223 IAEKVRQQAVMQNSRVSEAEIDAF--------------LEQAQKQGITLPEGAPLRQYRA 268 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ + + E + ++ Y Sbjct: 269 QH---------------ILIKADSENAAVGAESTIRKIY--------------------- 292 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 + G F LA + + S LG F+ + + +++ +L K Sbjct: 293 ---------GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KP 341 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G + FG+ I ++ ++ + T + ++ + + KA + + L Sbjct: 342 GQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 396 >gi|226941162|ref|YP_002796236.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis HLHK9] gi|226716089|gb|ACO75227.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis HLHK9] Length = 243 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 17/161 (10%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKK-FI 297 + + Y+ E++ E ++FP + A+ ++ F Sbjct: 74 TEATCREFYDTYPERFSQGESAVASHILFPLGDDELAKVVMRGKAEGVLAEVQAEPSRFA 133 Query: 298 QLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHV 353 LA S SLG F + + D++FS G+ TP ++ FG+ I V Sbjct: 134 DLARVHSTCPSGREGGSLGEFGRGQMVKP-FEDAVFS-TPAGEITPQLVETQFGFHIIQV 191 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + V+F ++K+ + + A + + E L + Sbjct: 192 QDRTQGGAVAFDDIKERLQQYLTDLAARQAMHEYLSGLVDA 232 >gi|153827415|ref|ZP_01980082.1| survival protein SurA [Vibrio cholerae MZO-2] gi|149738658|gb|EDM53001.1| survival protein SurA [Vibrio cholerae MZO-2] Length = 431 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKN-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|289422879|ref|ZP_06424710.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L] gi|289156709|gb|EFD05343.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L] Length = 325 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 80/196 (40%), Gaps = 10/196 (5%) Query: 204 AIADPSNAVLT--QWFEKYKDNYRAPEYKRISYILF-DVHEKEKKIEISNDELQAEYEKN 260 A + + ++ D++ +Y R I + E K+++I ++++ Y+ Sbjct: 116 AKQNIEEDKIKSNEYKSLNIDDHVLKKYIRDKMIENKNQEEFNKRVKIKEEDIKKYYKDK 175 Query: 261 KEKYFSPEIRTVEQLV--FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF--- 315 ++ E + + ++ +A+ A++ LKKG F + ++ + + + G + Sbjct: 176 INEFKEKEFDCYQIWIKNPNDKIKAENAYKDLKKGMDFSTVVKKYSEDENSKNKGGYIGK 235 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 K+ L + + K ++T V+ GY I + N + + T + + I + + Sbjct: 236 IKKENLIPELREKALIMRDK-EYTGVVKSKDGYFIIKIDN-QRNLTKTLDSCRTKIKDDL 293 Query: 376 RITKASEKVKEDYKRL 391 E K+ R+ Sbjct: 294 LEKLYQENNKKIINRI 309 >gi|311109018|ref|YP_003981871.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans A8] gi|310763707|gb|ADP19156.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans A8] gi|317405706|gb|EFV86002.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans C54] Length = 93 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + ++ + +A+E +++ G F QLA+E S +LG+F + Sbjct: 2 AQASARHILVSTEAKANELKTAIENGADFAQLAKENSSCPSSRDGGNLGTFGPGQMVK-E 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A G+ + FGY + V++ K Sbjct: 61 FDTVVFS-APVGEVQGPVKTQFGYHLVEVTSRK 92 >gi|187734680|ref|YP_001876792.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia muciniphila ATCC BAA-835] gi|187424732|gb|ACD04011.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia muciniphila ATCC BAA-835] Length = 357 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 11/187 (5%) Query: 209 SNAVLTQWFEKY--KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 + L + ++ ++ R+ + E S+++L+ Y +++ Sbjct: 148 TEQYLKTLHGQKLTQEQFQKKIAARLKQTEQLYRATAQAAEASDEDLKTYYNLIRDQLTP 207 Query: 267 PEIRTVEQLVFPN--------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318 P++R + ++ A+ + LK G+ F +LA E + G Sbjct: 208 PDLRKTRHIFLATLNREEAQVRQTAETLLERLKAGESFSRLAREFSEDERSAPAGGELGW 267 Query: 319 YIPDVSLADSIFSLAKKGDFTPV-IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 P + +LA D PV + +G+ + S +K T S++E + + R Sbjct: 268 ISPARAKETLGLALADVPDNRPVLLKSRWGWHLVEASPVKKGKTPSYEEALPALRDAARS 327 Query: 378 TKASEKV 384 + ++ V Sbjct: 328 LRKAQAV 334 >gi|328957038|ref|YP_004374424.1| foldase protein PrsA [Carnobacterium sp. 17-4] gi|328673362|gb|AEB29408.1| foldase protein PrsA [Carnobacterium sp. 17-4] Length = 333 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 99/299 (33%), Gaps = 38/299 (12%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPS---NLLLDQAKRFYFENRSVDYIVLNNRHV 202 I E E+ + + + + + + + + + + D+ + Y Sbjct: 33 ITEDEFYEAMKETVGTSMLQQLIIEDVLTDLYGDKVTDEVVDKQYATEEETYGGAEAFEY 92 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 + + + + I L + K E + +E+QA Y+ Sbjct: 93 IMLQ-------QGYTAENYKD-------TIRLNLLIEEAVKDKTEFTEEEIQAAYDAYVP 138 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEY 319 T ++ +++ A + + G F +LA E + G +FS Sbjct: 139 P------VTAAHILVEDEETAKDLITQINDGADFAELATENSVDTATAPNGGEITFSSGE 192 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 + ++ ++L + T + +G+ + + I+ + +E I +Q+ K Sbjct: 193 MV-PEFEEAAYALEEGEMTTEPVASEYGFHVIKM--IEKPEKGTLEEETDTIKDQLLTAK 249 Query: 380 ASEK---------VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 ++ + +D + + L T+MD ++ +++ + D E Sbjct: 250 LADSAAIQEVISGIMQDANIIIDDKDLATAMDAYLAPKEDSAVEESTTEEPAADSSATE 308 >gi|157368404|ref|YP_001476393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia proteamaculans 568] gi|157320168|gb|ABV39265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia proteamaculans 568] Length = 111 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ N+K ADE LK+G F LA + S SLG F+K + + ++F Sbjct: 27 HILVDNEKLADELLAKLKRGVSFDTLARKYSTCPSKRNGGSLGEFNKGTMV-AAFDKAVF 85 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 86 SIPLLKP---YGPVKTQFGYHIIKV 107 >gi|262172454|ref|ZP_06040132.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451] gi|261893530|gb|EEY39516.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451] Length = 431 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 68/379 (17%), Positives = 125/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S + K Q N + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDGALKTVKANAKQN-----NQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E IG++ D R+ I K+N+ + + +S +A+EG+ E+ Sbjct: 83 QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V E + K E Sbjct: 176 ----------YKISHIQLRVEEGQDKSE-------------------------------A 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFIQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEATFGELAQQY 326 >gi|239618053|ref|YP_002941375.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia TBF 19.5.1] gi|239506884|gb|ACR80371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia TBF 19.5.1] Length = 616 Score = 77.7 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 89/295 (30%), Gaps = 32/295 (10%) Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 V G I F +D + S L N + K + + Sbjct: 23 IAELTVDGTITGVHAFQ-----VGYDEYESALQGALANYESQGQSIDKYFGKESLPSEIQ 77 Query: 170 GGMRPSNLLLDQ--AKRFYFENR------SVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 G +LLD+ F E V I + + A L ++ Sbjct: 78 LGYSVLKVLLDRKVMAFFAMEQDVFPDEAQVQQITDELVSRYISDETTRAQLEMYYGS-I 136 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQ 280 +N+R + + + + +EKNK + E ++ + Sbjct: 137 ENFRKVVEDIVFVRTLSQNVFNAIVPDYDASATEYFEKNKTDIKNEYESVNAAHILVSTE 196 Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335 A E + + G+ F + A+ ++G + + ++ F+ A Sbjct: 197 ASAMELKEKILLGELSFEEAAKRYSLDQYSAQQGGNIGELKHGTVI-LEFEEAAFA-ATP 254 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 G+ + +GY + V++ +F ++ +KA E + ++ Sbjct: 255 GEIVGPVKTDYGYHLIKVNSKT-----TFDS-----YEDLKNSKAYEDIMSRFEN 299 >gi|260665523|ref|ZP_05866369.1| protease maturation protein [Lactobacillus jensenii SJ-7A-US] gi|260560644|gb|EEX26622.1| protease maturation protein [Lactobacillus jensenii SJ-7A-US] Length = 304 Score = 77.3 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 27/195 (13%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 + + + + YK Y + K I L V + +I++ + Sbjct: 73 KVTQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIKTNLLTVAALKDIKKITSKQ 132 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 Q ++ + K TV+ ++ + A++ + LK G F LA++ + + Sbjct: 133 EQKAWKSYQPK------VTVQHILVSKKSTAEDVIKQLKSGTSFATLAKKYSIDSATKNK 186 Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 G S + D + F L T + GY I + IK F + Sbjct: 187 GGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKM--IKHPSKGKFSDH 244 Query: 368 KKDIANQMRITKASE 382 KK+I Q+ + + Sbjct: 245 KKEIDEQIYQSMEQD 259 >gi|149924928|ref|ZP_01913258.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1] gi|149814196|gb|EDM73809.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1] Length = 397 Score = 77.3 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 112/370 (30%), Gaps = 78/370 (21%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 + +VG + +P + F+ ++ E + ++ + A +KI+D L+ + Sbjct: 73 VLATVGDRSIPKADFLARYEPEATKLLERRDDGKVPD-AYQAMQREKIIDALIWSELMAL 131 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 E G++ ++ E + H D + + L R G + L Sbjct: 132 EAERSGVDVSPEKLAEEEGKQKA-HVAD-------WNAWLERIGQTPEIRQAMTRDYLRE 183 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK-- 219 ++ + + L +++ Sbjct: 184 RALIEA----------------------------------RKGPIEATEEELRAAYDESI 209 Query: 220 YKDNYRAPE-YKRISYILFDVHEKEKKIEI----------SNDELQAEYEKNKEKYFSPE 268 AP+ R S+ L +E +I ++ ++ E++ + Sbjct: 210 KAGRLTAPQPMARASHFLITYGPREGDEKIQPVPFKQREETDQAVKDEWKAKAKARAEAL 269 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 +Q G F + E + +G F + + + Sbjct: 270 RELAQQ-----------------PGVDFNEFCREYSEGPGAYRGGDMGLFPQTQMIK-AY 311 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 AD FSL + G + + GY + V + + F+ V+ D+ Q+ K + Sbjct: 312 ADVAFSL-EIGVLSEPVESDKGYYVIKVFGRYEAGDLPFEAVRADLVRQVEGQKLQMGRE 370 Query: 386 EDYKRLEEFL 395 K LEE Sbjct: 371 ALRKELEERF 380 >gi|240081552|ref|ZP_04726095.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA19] gi|240124329|ref|ZP_04737285.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID332] Length = 332 Score = 77.3 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 31/221 (14%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + + +P +R I + +S E+ A E+ Sbjct: 117 IQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 176 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA Sbjct: 177 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQARNGTDFTGLARRYS 236 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 237 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 294 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 ++ I N +R +K + L L G +D Sbjct: 295 P-----EERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVD 330 >gi|124004175|ref|ZP_01689021.1| chaperone SurA, putative [Microscilla marina ATCC 23134] gi|123990245|gb|EAY29744.1| chaperone SurA, putative [Microscilla marina ATCC 23134] Length = 460 Score = 77.3 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 114/356 (32%), Gaps = 81/356 (22%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELG 65 + + K ++ VL + I G S + G V V + S + L Sbjct: 7 QKLIFKSYIKVLLLCLAI-GFSSMSMAQGGGQLVDKIIAKVNNNIILESDLQQRY---LE 62 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125 +ISQ + A L KIL+ ++ L E + V ++ Sbjct: 63 IISQ------SQTTAPEKDLKCKILEEMIIQKLLVAKAEIDSVIVSDIEVNLQL------ 110 Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 D + + L G +++ Y K + + + + + Sbjct: 111 ---DRRIDY-----MLKSVGGEKQQLEKLYGKTM----------------DQIKEDIRDI 146 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 E +V + N + + + + Q+F+ + + + Sbjct: 147 LKEQMTVSKM---NGEITSTVKITPKEVRQYFDSIPKD--------------SLPYFSDE 189 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 +E+ + K P +++ +++ ++ L KG+ F QLA+E + Sbjct: 190 VEV----------GHIVKIPEPTKEQKQKI----RQKLEKIRGRLMKGEDFAQLAQEFSQ 235 Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +LG ++ ++F L KK + + VI G+ + + + Sbjct: 236 DYVSAKQGGNLGWQTRGVFV-PKFEAAVFRL-KKNEISKVIETQLGFHVIQLLERR 289 >gi|329119266|ref|ZP_08247953.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464613|gb|EGF10911.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200] Length = 321 Score = 77.3 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 87/272 (31%), Gaps = 36/272 (13%) Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMF--VGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 A + +E E H L +V G+ S D+A + L Sbjct: 58 AAQRPSENELRRHILAQLVNRALVVQAGKRRGITASEAETDEALAHAAAQKHTTVENLYA 117 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 ++ + R + I ++ +S+ E+ A E+ Sbjct: 118 QNAKNGIS-------------RATLRKDTAEGIIAEKVRQQAILQQARVSDAEVDAAIER 164 Query: 260 NKEKYFS------PEIRTVEQLVFPNQKE---------ADEAFQSLKKGKKFIQLAEEQG 304 K++ + ++ +K+ + K G+ F LA++ Sbjct: 165 AKQQGITLPAGKPVRQYRARHILIKAEKDNALASAESVIRKIQNQAKAGRDFGDLAKQYS 224 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F + D++ L KKG + + FG+ + +++ + S T Sbjct: 225 QDTSAAQGGDLGWFGDGVMV-PEFEDAVKKL-KKGQISRPVKTQFGWHLIQLTDTRESGT 282 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + + + KA + ++L E Sbjct: 283 PE-ERQRNAVRQYIMQQKAEAASAQLLQQLHE 313 >gi|326202453|ref|ZP_08192322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium papyrosolvens DSM 2782] gi|325987571|gb|EGD48398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium papyrosolvens DSM 2782] Length = 363 Score = 77.3 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 113/306 (36%), Gaps = 45/306 (14%) Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT-- 162 D+G+ V + + +K F +G KE I T + Sbjct: 47 DLGITKQEYLVLSKFNMNSFLQNAQSK-DSTKFDWNQKYQGSTAKEQIKKATLDSIQEIK 105 Query: 163 -DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 ++ G++ LD ++ + ++ + L + Sbjct: 106 IQLIKAKEAGVKLEKADLDNIEKAIDQR---------IQNAGGSRAEAEKQLKNDYGVSL 156 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 +Y+ YK + + + K++I++DE++ +Y+ +K Y + TV ++ Q Sbjct: 157 ADYKEV-YKELVLSQKYMESERNKVKITDDEIKKQYDAHKADY---DKVTVTHILVATQD 212 Query: 282 -----------------EADEAFQSLKKGKKFIQLAE----EQGKSLSDISLG--SFSKE 318 +AD + +++G LAE ++G+ + G +FSK Sbjct: 213 LQTGAAFTEGKKKEAKEKADNLLKQIQQGADMQALAEKNSDDKGQDGKVNNKGVYTFSKG 272 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + D F+ K GD T V+ S+GY + + + F +VK +I + + T Sbjct: 273 KMV-PQFEDWAFANHKAGD-TGVVETSYGYHVMKFEKREETK---FDDVKDEIKSTILNT 327 Query: 379 KASEKV 384 + +++ Sbjct: 328 RFNDEF 333 >gi|288800871|ref|ZP_06406328.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 299 str. F0039] gi|288332332|gb|EFC70813.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 299 str. F0039] Length = 713 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 56/468 (11%), Positives = 139/468 (29%), Gaps = 97/468 (20%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IR + + V+ + +A S S + V +K+ F Sbjct: 4 LGKIRSK-----GAVLVGVIGFALFAFIAEEAFRSWESSRNNDRQQLGKVLGKKLDVQEF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 ++ +I + G SE + + + V +++ +E +GL + Sbjct: 59 QKLVEEYSEVIKMQQGKENLSEE-EQTQIRDMVWNTFVQNKIIEKEVEALGLTVTDAEIQ 117 Query: 117 --------GEIARSPLFHGKDNKFSHDVFVSRLA----REGINEK---EYID-------- 153 + +P + + +F + LA ++ N + +Y + Sbjct: 118 NVLKAGTNQMLMGTPFVNQQTGRFDVNALKKFLADYKTQKSTNPQMAQQYENLYKYWVFI 177 Query: 154 --HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + + L +F + + + A + E ++ + Sbjct: 178 EKNLRQQLLAQKYQALFANCLLSNPIEAKMAFKDNTEESNIQLASFPYSSIDD------- 230 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIR 270 KI ++ +L+ +Y++ KE++ P E R Sbjct: 231 --------------------------------SKISVTESDLKNKYDELKERFKQPVETR 258 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-------DISLGSFSKEYIPDV 323 ++ + + + + LKK +F A++ ++ SL F + Sbjct: 259 NIKYIDIQVKPSTKD-TEDLKK--QFAGYAKDLSEATDVNNVVRRSTSLVPFLGVAVTKN 315 Query: 324 SLADSIFSLAK---KGDFTPVIHGSF--GYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + I S G + V +F I + + + V Sbjct: 316 AYPQDIASKLDSMSVGQVSNVFESNFDNTLNIIKLVSKQQLP----DSV--QYRQIQVGG 369 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 +E+ ++ + + L G + ++++ + L ++ Sbjct: 370 ATAEQARKTADSVYQALKGGADFEVLAKKYGQTGDKVWLTTSQYQNAP 417 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 116/370 (31%), Gaps = 40/370 (10%) Query: 262 EKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ +K AD +Q+LK G F LA++ G++ + L + Sbjct: 352 SKQQLPDSVQYRQIQVGGATAEQARKTADSVYQALKGGADFEVLAKKYGQTGDKVWLTTS 411 Query: 316 SKEYIP----DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE-VKKD 370 + P D + + + G +I V N VKK+ Sbjct: 412 QYQNAPSLDNDTKTLIETLNTLPANEVKNIAFTQ-GNIIVQVLNRSAFTNKYVAAVVKKN 470 Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 I + Y + F++ T+ + I++ + ++ + Sbjct: 471 I------DFSQNTYTTAYNKFSSFVSANTTPEAITKNAAKSGYTV--LERKDVTTAEHYL 522 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKK 488 A I L +F + + + V + + P R + +V VK Sbjct: 523 AGIHGTRDALKWLFDAKEGEVSPMYQCGDNDHLLLVILDKINPKGYRAVTDPQVKEIVKA 582 Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----NENKFF 544 + K AE++ +KA +G N + K GA++ QI Sbjct: 583 EVIKDKKAEQLMAKA---------KGVNSINAAKAKGATISDVAQITFAAPVFIPATGAS 633 Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT-----NSKVGPVQEKDKFISYLTQMMN 599 V + P++ + +F+VT N +E+ K Q Sbjct: 634 EPALSGAVSATAKGKFSAQPVKGNAAVYLFQVTGKATNNVPFKATEEEQKLRQKYMQYAG 693 Query: 600 KDLLDSVIAY 609 + + I Sbjct: 694 SFMNELYINA 703 >gi|281356754|ref|ZP_06243245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis ATCC BAA-548] gi|281316881|gb|EFB00904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 113/356 (31%), Gaps = 82/356 (23%) Query: 40 SSTVVSVGRQKVPFSS-FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 +S + SV + + + +QE + G + + +K +D+L+ Sbjct: 24 NSVLASVNGEPISLWDVLPATRQQEYQAYAAYSGDRLYEAI---RQIRRKTVDDLIDRKL 80 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTK 157 L D E + + E+ R G + E+I + Sbjct: 81 LIADYRDKPFEISNQEIEAELDNIAE------------------RMGYRARSEFIREARE 122 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + L++ ++ E+ V ++ HV P + +++ Sbjct: 123 -----------------AGSSLEKIRKNVEESLIVQLMIFRRIHVAENVTP--KEIYEYY 163 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + + + + PE + +L + ++ + + + + Sbjct: 164 KAHSEEFVKPETIELGLLLLSPDR-KDLEAVTAE--------------------ISKKLA 202 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAK 334 + + F LA + + + +LG + + A +I S + Sbjct: 203 ADP-------------ENFAALARQYSSGPDAENGGNLGLIERRRL-RPEFAAAIPS-PE 247 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 KG I G V N P+ F+++ +I ++ K EK++++Y + Sbjct: 248 KGKVCGPIRTGDGVSFLKVLNHNPAERREFRKLTPEIRRRIEQDK-REKIRDEYVK 302 >gi|254292211|ref|ZP_04962978.1| survival protein SurA [Vibrio cholerae AM-19226] gi|150421868|gb|EDN13848.1| survival protein SurA [Vibrio cholerae AM-19226] Length = 431 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASIAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ L+ G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|206580185|ref|YP_002237552.1| nitrogen fixation protein NifM [Klebsiella pneumoniae 342] gi|206569243|gb|ACI11019.1| nitrogen fixation protein NifM [Klebsiella pneumoniae 342] Length = 266 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 77/237 (32%), Gaps = 21/237 (8%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-LT 214 + L+++ + A + + V + +PA A L Sbjct: 9 RQRLAQSRWNCEPAAIAAVDRQAFEAAWQRQAQMEQVIVAQIAPEAIPAALQEGLATSLG 68 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-----ISNDELQAEYEKNKEKYFSPEI 269 W ++ + E I + I +QA Y +++ ++ PE Sbjct: 69 AWLDE--GGFTPAERAAIVLHHARLETAFAGIASQAPRPDPATVQAWYLRHQAQFMRPEQ 126 Query: 270 RTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLAEEQG---KSLSDISLGSFSKE 318 R L+ + + + + F LA+ +L LG + Sbjct: 127 RLTRHLLLTVDGDDQTVYSRIRELHGQIEASREAFAPLAQRHSHCPSALDGGLLGWIGRG 186 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + L +++F+LA+ + + G+ + I+P+ ++ ++ + + + Sbjct: 187 LLY-PQLEEALFALAEN-ALSAPVASELGWHLVWCEAIRPAAPMTPEQALESARDYL 241 >gi|300361160|ref|ZP_07057337.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03] gi|300353779|gb|EFJ69650.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03] Length = 298 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 17/228 (7%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G + S + ++ IV + D + + + + KYK Y + Sbjct: 36 GKITESQYYNKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95 Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280 + + ++ ++ L+ EK K + PE+ TV+ ++ + Sbjct: 96 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 154 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335 A++ + LK G F +LA++ L +F S + D S + F L Sbjct: 155 STAEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 T + +GY + + IK + +E KK I NQ+ + + ++ Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 260 Score = 45.0 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560 + +++ K+G +F+ + K T N + D+ + + F + Sbjct: 157 AEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216 Query: 561 KCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616 P++ Y V K+ +K + K + + + Q M++D ++ SVIA + + V Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 276 Query: 617 TVHDNLIQRYL 627 ++ D ++ L Sbjct: 277 SIKDKDLKNVL 287 >gi|257789791|ref|YP_003180397.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta DSM 2243] gi|257473688|gb|ACV54008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta DSM 2243] Length = 418 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 45/371 (12%), Positives = 104/371 (28%), Gaps = 37/371 (9%) Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 G+E + I + D + + L++ + ++ +++ Sbjct: 45 GVEIAEDTITNYIQGV---REQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLK 101 Query: 167 MFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKYKDN 223 V G+ + +D+ N D + + S A + Q ++ K Sbjct: 102 EGVEEKGITVESSEIDEQIDKVKANYDTDEKWQAALDQAGMTEDSYRAEIEQKLKENK-- 159 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQK 281 + S+ ++ + Y + ++F ++ Sbjct: 160 --------------LYASFASDEDPSDADMLQYAQMYATAY--DGSKRSSHILFNSDDEA 203 Query: 282 EADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDF 338 A E L G+ F+ +E + + P + L +KG Sbjct: 204 TAQEVLDKLNSGELDFVDAVKEYSQDPGSVERDGDVGWNNPSNLAKEYKDGLEPLEKGQL 263 Query: 339 TPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKD----IANQMRITKASEKVKEDYKRLE 392 + ++ FG I +++ P S ++ ++ IA+ ++ TK E K+ Sbjct: 264 SGLVTTQFGIHIIKCTDVYKAPEEVTSLDQIPEEWISVIASSLKSTKQQEAYKKWLDETT 323 Query: 393 EF--LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 E + + + + P D D + + Sbjct: 324 EAADIKINDMPQGLPYDVDMSKYPAPNADSGATDGTQEGSTDGAEGGEAADGASADGTDA 383 Query: 451 SKDHTVALPDG 461 A DG Sbjct: 384 PASEDQAATDG 394 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 17/215 (7%) Query: 9 SRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +T++ K V WGL SD S +V ++ + N + Sbjct: 2 KKTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVR 61 Query: 65 GMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + G ++ + +++ ++ L + +E+ G+ + + +I Sbjct: 62 EQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQID 121 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + + D + + + L + G+ E Y + L + F PS+ + Sbjct: 122 KVKANYDTD-----EKWQAALDQAGMTEDSYRAEIEQKLKENKLYASFASDEDPSDADML 176 Query: 181 QAKRFYFENRSVDY----IVLNNRHVPAIADPSNA 211 Q + Y I+ N+ + + Sbjct: 177 QYAQMYATAYDGSKRSSHILFNSDDEATAQEVLDK 211 >gi|322508232|gb|ADX03686.1| Peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii 1656-2] Length = 414 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 121/405 (29%), Gaps = 69/405 (17%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F+ V V + S + + + E L ++LD L+ Sbjct: 4 FAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQ-----KKEVPPQQYLQFQVLDQLI 58 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID- 153 + ++ G++ D + + + + S + F +L I Y + Sbjct: 59 LRQAQLEQVKKYGIKPDEKSLNEAVLKVA---SQSGSKSLEAFQQKLDA--IAPGTYENL 113 Query: 154 --HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPA 204 + L+ + + ++ S+ +D Q + V ++ ++ + Sbjct: 114 RSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQE 173 Query: 205 IADPSNAVLTQWFEKYKDN------------------YR----APEYKRISYILFDVHEK 242 + + + V +Q + N +R P + Sbjct: 174 VQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQT 233 Query: 243 EKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLK 291 I + + L+ K E+ ++ ++ D ++ LK Sbjct: 234 TDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLK 293 Query: 292 KGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 G+ F LA + G + SLG + + + + G+ + FG Sbjct: 294 AGEDFAILAATYSNDTGSARDGGSLGWVTPGMMV-PEFDKKMQEIP-VGEISEPFQTQFG 351 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + I V++ + KD+ ++ + A + + E E Sbjct: 352 WHILQVTDKRE----------KDMTHEYQERMARQILGERQFNTE 386 >gi|304383132|ref|ZP_07365606.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973] gi|304335709|gb|EFM01965.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973] Length = 713 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 70/647 (10%), Positives = 189/647 (29%), Gaps = 98/647 (15%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59 L IR S+ + I + V F+ + S + V + +KV F Sbjct: 4 LGKIR--SKGLILIIIISVGLFAFIAEEFVRSCEATRNNERQQVGEIMGEKVSVQDFQKL 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117 ++ +I G ++ + + + V +++ E +GL + Sbjct: 62 VEEYTNVIKMTQGRENLTDE-EQNQVKDMVWNTYVQNKLIEKETEKLGLTVTDQELQNIL 120 Query: 118 ------EIARSPLFHGKDNKFSHDVFVSRLA----------------REGINEKEYIDH- 154 + ++P + + +F + LA ++ + +I+ Sbjct: 121 NEGTNPMLLQTPFVNQQTGRFDANALKKFLADYKTAKTGDPRAAEQYQQLYDFWTFIEKT 180 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVL 213 + + + + + A + E +V + ++A L Sbjct: 181 LRQQTLSQKYQSLLAHCLLSNPVEAKMAFKAENEESNVQLAAFPYSSINDNQVKVTDADL 240 Query: 214 TQWFEKYKDNYRA-PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 +++ K ++ E + I ++ V + Sbjct: 241 KAKYDELKPRFKQYEETRDIKFVDVHVQASAADRSV------------------------ 276 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +F + +E LK ++ + ++ LG + +A I S+ Sbjct: 277 ---LFKS---VNELTDQLKAVSDPAEVIRKSNSAVPY--LGVPVSKNAFPQDIAQRIDSM 328 Query: 333 AKKGDFTPVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS------EKV 384 A G + + + K + + ++ + Sbjct: 329 A-VGTVYGPVENKQDNTLNVIRLM------------AKSQLPDSIQFRVIQIGGVSVDAA 375 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 ++ + L G D ++++ + + + Y E L Sbjct: 376 RKTADSVYTALKGGAEFDALAKKYGQTGERTWMTTRQYEQSPSMDNDTKTYIEAL----- 430 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 P+++ +A+ G+ + +Q+ + ++ + V +KK K + Sbjct: 431 -NTQPVNEIRNIAMTSGN-VILQVVDRKGMTEKYIAAV---IKKPIDFSKNTYSAAYNKF 485 Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKC 562 + ++ + G + + + D + VF V Sbjct: 486 SKFVSENQTLDGIQKNAAKYGFKVQEAGDVRTSQHYVAGIHSTRDAMKWVFDAKEGEVSP 545 Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609 E G + + + +K+ P+ +D + + ++ +++L + A Sbjct: 546 L-YECGDNDHLLVIVLNKIHPMGYRDLDDAQVKDLVRQEVLRDMKAN 591 Score = 74.3 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 109/353 (30%), Gaps = 35/353 (9%) Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD-------SIF 330 +K AD + +LK G +F LA++ G++ + D Sbjct: 374 AARKTADSVYTALKGGAEFDALAKKYGQT---GERTWMTTRQYEQSPSMDNDTKTYIEAL 430 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + + + S G VI V + K V I + +K Y + Sbjct: 431 NTQPVNEIRNIAMTS-GNVILQVVDRKGMTEKYIAAV---IKKPIDFSK--NTYSAAYNK 484 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 +F++ ++D I + + VA I + VF + Sbjct: 485 FSKFVSENQTLDGIQKNAAKYGFKVQEAGDVRTSQHY--VAGIHSTRDAMKWVFDAKEGE 542 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVL 508 + + + + + P R L+ +V V+++ KAN L+ Sbjct: 543 VSPLYECGDNDHLLVIVLNKIHPMGYRDLDDAQVKDLVRQEVLRDM-------KANTLIN 595 Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-----CF 563 + +G K GA++ NQI SG V V Sbjct: 596 KL--KGVTSIAAAKGKGATVQAVNQIT-FAAPVFIASTGAAEPALSGAVSAVGKGRFSPH 652 Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 P++ +F+VT PV+ K + L + + L ++ V Sbjct: 653 PVKGMAGVYLFQVTGKTTRPVKFDAKAYEQKMKQHAMQLAGNFMQELYAKAKV 705 >gi|256827570|ref|YP_003151529.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM 15641] gi|256583713|gb|ACU94847.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM 15641] Length = 404 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 40/343 (11%), Positives = 94/343 (27%), Gaps = 88/343 (25%) Query: 45 SVGRQKVPFS---SFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLD 100 +V ++ F+ ++++ G+ + G + + +I+D V Sbjct: 40 TVNGTEISEQTVTDFVQNFRETQGLTDEDTWGKWMAKSSMTPSQVRDQIIDYFVGIDLTR 99 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q E+ G+ V ++A N D + S L + G E+ Y D + Sbjct: 100 QAAEENGVSVSDEDVDAQVASMKA-----NYSDDDAWQSALKQAGTTEEGYRDSVHNAML 154 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 + + A S+ L + ++Y Sbjct: 155 ENALKEKVTA--------------------------------ESTAGASDEELLTYAQQY 182 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 ++ + D + +K+ Sbjct: 183 ARSFSGAKKSSHILFASDDSDTAQKV---------------------------------- 208 Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKG 336 + G+ F A+E G + + D++ +L K G Sbjct: 209 ------LDQINSGQISFEDAAKEYSIDTVSAQDGGNVGWDLLNRFVQPYTDALTNLDK-G 261 Query: 337 DFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQMRI 377 + ++ +G I +++ P +V ++ + +R Sbjct: 262 QVSGLVMSDYGIHIIKCTDVYEAPDEVTEIDQVPVELIDYIRK 304 >gi|15640472|ref|NP_230099.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121729954|ref|ZP_01682374.1| survival protein SurA [Vibrio cholerae V52] gi|147674503|ref|YP_001218713.1| survival protein SurA [Vibrio cholerae O395] gi|153823925|ref|ZP_01976592.1| survival protein SurA [Vibrio cholerae B33] gi|227080656|ref|YP_002809207.1| survival protein SurA [Vibrio cholerae M66-2] gi|229507084|ref|ZP_04396590.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX 330286] gi|229508761|ref|ZP_04398253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33] gi|229519748|ref|ZP_04409191.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9] gi|229606260|ref|YP_002876908.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236] gi|254850676|ref|ZP_05240026.1| chaperone surA precursor [Vibrio cholerae MO10] gi|255743828|ref|ZP_05417785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101] gi|262147181|ref|ZP_06027987.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE 91/1] gi|262167591|ref|ZP_06035295.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27] gi|298501023|ref|ZP_07010824.1| survival protein SurA [Vibrio cholerae MAK 757] gi|81788531|sp|Q9KUS0|SURA_VIBCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|9654869|gb|AAF93618.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628294|gb|EAX60804.1| survival protein SurA [Vibrio cholerae V52] gi|126518552|gb|EAZ75775.1| survival protein SurA [Vibrio cholerae B33] gi|146316386|gb|ABQ20925.1| survival protein SurA [Vibrio cholerae O395] gi|227008544|gb|ACP04756.1| survival protein SurA [Vibrio cholerae M66-2] gi|227012299|gb|ACP08509.1| survival protein SurA [Vibrio cholerae O395] gi|229344437|gb|EEO09412.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9] gi|229354164|gb|EEO19095.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33] gi|229355829|gb|EEO20749.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX 330286] gi|229368915|gb|ACQ59338.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236] gi|254846381|gb|EET24795.1| chaperone surA precursor [Vibrio cholerae MO10] gi|255738577|gb|EET93965.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101] gi|262023927|gb|EEY42624.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27] gi|262031386|gb|EEY49994.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE 91/1] gi|297540271|gb|EFH76331.1| survival protein SurA [Vibrio cholerae MAK 757] Length = 431 Score = 77.3 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKST-------------------------------A 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ L+ G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|238855146|ref|ZP_04645468.1| foldase protein PrsA [Lactobacillus jensenii 269-3] gi|282932559|ref|ZP_06337981.1| foldase protein PrsA [Lactobacillus jensenii 208-1] gi|313473154|ref|ZP_07813638.1| foldase protein PrsA [Lactobacillus jensenii 1153] gi|238832227|gb|EEQ24542.1| foldase protein PrsA [Lactobacillus jensenii 269-3] gi|239528600|gb|EEQ67601.1| foldase protein PrsA [Lactobacillus jensenii 1153] gi|281303307|gb|EFA95487.1| foldase protein PrsA [Lactobacillus jensenii 208-1] Length = 304 Score = 77.3 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 27/195 (13%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 + + + + YK Y + K I L V + +I++ + Sbjct: 73 KVTQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQ 132 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 Q ++ + K TV+ ++ + A++ + LK G F LA++ + + Sbjct: 133 EQKAWKSYQPK------VTVQHILVSKKSTAEDVIKQLKSGTSFATLAKKYSIDSATKNK 186 Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 G S + D + F L T + GY I + IK F + Sbjct: 187 GGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKM--IKHPSKGKFSDH 244 Query: 368 KKDIANQMRITKASE 382 KK+I Q+ + + Sbjct: 245 KKEIDEQIYQSMEQD 259 >gi|256852157|ref|ZP_05557543.1| protease maturation protein [Lactobacillus jensenii 27-2-CHN] gi|260661810|ref|ZP_05862721.1| protease maturation protein [Lactobacillus jensenii 115-3-CHN] gi|282933671|ref|ZP_06339030.1| foldase protein PrsA [Lactobacillus jensenii 208-1] gi|256615203|gb|EEU20394.1| protease maturation protein [Lactobacillus jensenii 27-2-CHN] gi|260547557|gb|EEX23536.1| protease maturation protein [Lactobacillus jensenii 115-3-CHN] gi|281302204|gb|EFA94447.1| foldase protein PrsA [Lactobacillus jensenii 208-1] Length = 302 Score = 77.3 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 27/195 (13%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 S + + + YK Y + K I L V + +I++ + Sbjct: 73 KVSQKQVDKEYNAYKKQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQ 132 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 Q ++ + K TV+ ++ + A++ + LK G F LA++ + Sbjct: 133 EQKAWKSYQPK------VTVQHILVSKKSTAEDIIKQLKSGTSFATLAKKYSTDSATKDK 186 Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 G S + D + F L T + GY I + IK F + Sbjct: 187 GGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKM--IKHPSKGKFSDH 244 Query: 368 KKDIANQMRITKASE 382 KK+I Q+ + + Sbjct: 245 KKEIDEQIYQSMEQD 259 >gi|325107411|ref|YP_004268479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces brasiliensis DSM 5305] gi|324967679|gb|ADY58457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces brasiliensis DSM 5305] Length = 423 Score = 77.3 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 49/371 (13%), Positives = 110/371 (29%), Gaps = 71/371 (19%) Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98 S+ V V V + +++ + +++ A L K+ L + Sbjct: 104 DSTVVAVVNGNTVLAGDVFAPYARQMVKMREQL--TDEQYLAAQRELLKRDLPGHIERTL 161 Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158 L + ++ D + +H K+ Sbjct: 162 LSHA---LKSTLKQEQIDKL----------DGVLDQA---------------FAEHVEKL 193 Query: 159 LSRTDVVGMFVGGMRPSN---LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 L +T+ + + L D + F + ++ Y+ L Sbjct: 194 LVKTETSSALELDKKLQSEGTSLADIRQTFGTQQLAMQYL---ATESQVNVQLGRVDLLN 250 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++ + D + P + I + + R Sbjct: 251 YYRENLDRFSHPTRVKWQEIRVSITP------------------------QQDRRAAVMK 286 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSL 332 + +E + L++G F +A E + + ++ + DV L +FSL Sbjct: 287 L-------NEVVKKLQEGVAFPDVAREYSDGPTASQGGNWDWTKEDSLADVELNKELFSL 339 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 G + +I + I V + + F++++ + ++R K EK E ++L Sbjct: 340 P-TGAISRIIETDKYFRIIRVVEREDAHVTPFEKLQDGLREEIRSKKRHEKTAEVLRKLN 398 Query: 393 EFLALGTSMDE 403 E + T D+ Sbjct: 399 ETAVIQTIFDD 409 >gi|330448801|ref|ZP_08312448.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492992|dbj|GAA06945.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 433 Score = 77.3 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 160/495 (32%), Gaps = 90/495 (18%) Query: 22 FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + ++ G+S + V++V + S N+ + + + + + + Sbjct: 8 VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDV-NAMLKTVHLNAAEEHQQLPPND 66 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L ++++D L+ Q + +G+ D ++ IA Sbjct: 67 I----LRQQVMDKLIMENLQIQQAKQLGIRIDDSQLDQAIADVA---------------- 106 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 + GI +D + L++ + +++L +A+ R + + Sbjct: 107 --KQRGIT----VDQLRQTLAKAGISYPMFREQMRNDMLASEARTVIVRKR----VNILP 156 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + V A+A Q + + +I + D +A +K Sbjct: 157 QEVDALAKQMAKQTQQ--------------------NVQYNISQIQIRVDEDAEKAARDK 196 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316 ++EA++ LKKG F QLA K+L G S Sbjct: 197 -------------------AKQEAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMS 237 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373 KE +P AD I + K GY I ++++K +VS EVK I Sbjct: 238 KEEMP-TIFADQIQNNGKD-AIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKP 295 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 + ++ A+ K ++ +++ + + G + K S D G+ Sbjct: 296 SVILSDAAAK--KELEQIRQRIISGK--QSFAAAAKAYSQDPGSAANGGELGWQVPDMYA 351 Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493 P + + + P+ K + V+++ DR + + Sbjct: 352 PAFKDKVETL-----PVDKISEPFKSAFGWHIVEVEGRRKV-DRTDAAMKNRAAQILFNR 405 Query: 494 KTAEEVSSKANQLVL 508 K EE + +L Sbjct: 406 KFNEEAQTWLQELRA 420 >gi|301166294|emb|CBW25869.1| peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus SJ] Length = 90 Score = 77.0 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 + + ++ ++ E + + +++GK F +LA + S SLGSF K + Sbjct: 3 QISAQHILVDHEYEITDLLKKIEEGKTFEELARDYSNCPSGKDGGSLGSFGKGMMVKP-F 61 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + F+L K G+ + + FGY + Sbjct: 62 EQAAFAL-KVGEVSGAVRTQFGYHLIK 87 >gi|122070648|sp|Q5ZYR3|SURA_LEGPH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor Length = 429 Score = 77.0 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 73/488 (14%), Positives = 146/488 (29%), Gaps = 90/488 (18%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79 + V L G+ A V V + S + I + N + Sbjct: 5 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59 Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139 L K++L +L+ Q + G+ ++ + I + N + Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115 Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 + ++GI+ +EY + + + ++ + Sbjct: 116 EITKQGISWQEY----RQNIRKEMLIS-----------------------------RVQQ 142 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + V +N + Q+ + RI H K I +S + Sbjct: 143 KAVGKDIIVTNEQVEQYLKT---------SGRIENSNLTYHLKNIVIPLSEE-------- 185 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFS 316 P + +++ + EA+ +KKG+ F +LA E+ +L LG Sbjct: 186 -------PTTKQLQR----AKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERH 234 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD--IANQ 374 +P+V A + + K G I G+ + + + V + + Sbjct: 235 LAELPEV-FAKEVVHM-KVGQVAGPIRAGNGFHLIKLVAVGGENQR---HVITQTHVRHI 289 Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + AS E K++ S + + K S+D G +P Sbjct: 290 LLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVP 349 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKT 492 E+ + + H V+ P + + E I R + E V++ + Sbjct: 350 EFEKTMNSL--------PLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQ 401 Query: 493 VKTAEEVS 500 K E V Sbjct: 402 RKFVEAVQ 409 >gi|116630072|ref|YP_815244.1| peptidylprolyl isomerase [Lactobacillus gasseri ATCC 33323] gi|238854106|ref|ZP_04644453.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4] gi|311110302|ref|ZP_07711699.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22] gi|116095654|gb|ABJ60806.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus gasseri ATCC 33323] gi|238833182|gb|EEQ25472.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4] gi|311065456|gb|EFQ45796.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22] Length = 298 Score = 77.0 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G + S + ++ IV + + + + + + KYK Y + Sbjct: 36 GKITESQYYNKMKESQAGQSTLASMIVSDALESQYGKEVTQKQVDKEYNKYKKQYGSQFD 95 Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280 + + ++ ++ L+ EK K + PE+ TV+ ++ + Sbjct: 96 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 154 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335 A++ + LK G F +LA++ L +F S + D S + F L Sbjct: 155 STAEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 T + +GY + + IK + +E KK I NQ+ + + ++ Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 260 Score = 45.0 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560 + +++ K+G +F+ + K T N + D+ + + F + Sbjct: 157 AEDIIKQLKDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216 Query: 561 KCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616 P++ Y V K+ +K + K + + + Q M++D ++ SVIA + + V Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 276 Query: 617 TVHDNLIQRYL 627 ++ D ++ L Sbjct: 277 SIKDKDLKNVL 287 >gi|258627055|ref|ZP_05721853.1| survival protein SurA [Vibrio mimicus VM603] gi|258580729|gb|EEW05680.1| survival protein SurA [Vibrio mimicus VM603] Length = 431 Score = 77.0 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + K Q N + L +++L+ L+ Sbjct: 28 DGVAVIVNSGVILQSDVDGALKTVKANAKQN-----NQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E IG++ D R+ I K+N+ + + +S +A+EG+ E+ Sbjct: 83 QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V E + K E Sbjct: 176 ----------YKISHIQLRVEEGQDKSE-------------------------------A 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEATFGELAQQY 326 >gi|260767121|ref|ZP_05876066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP 102972] gi|260617876|gb|EEX43050.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP 102972] gi|315181264|gb|ADT88178.1| survival protein SurA [Vibrio furnissii NCTC 11218] Length = 431 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 59/380 (15%), Positives = 118/380 (31%), Gaps = 92/380 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + + N L +++++ L+ Sbjct: 28 DRVAVIVNNGVILQSDIDTALLSVKANAKKN-----NRALPDEAVLREQVVEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E IG+ D R+ I K+N + + +A EG+ E+ + + Sbjct: 83 QQEAERIGVRIDDNRLNEAINDI----AKENHQTAEQLRVSVAAEGLTYPEF----REQI 134 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 + + R ++ + + + A +NA + Sbjct: 135 RKEMSASEARNALV---------------RRRINILPAEVNTLADLLAKETNATIQ---- 175 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +IS+I ++ + K E+ Sbjct: 176 -----------YKISHIQLRFNDGQDKSEV------------------------------ 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + +A + + L KG F +A K +L G KE +P AD I + K Sbjct: 195 -EAQAKKLVEQLNKGADFSTMAITYSKGPKALDGGDWGWMRKEEMP-TIFADQI-KMQNK 251 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDY 388 G G+ I + ++K TV+ EV K I + A +++ E Sbjct: 252 GTIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDDGAQKQLNEFV 309 Query: 389 KRLEEFLALGTSMDEISRRE 408 +R++ A + E++++ Sbjct: 310 RRIQ---AGEATFGELAQQY 326 >gi|109899724|ref|YP_662979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas atlantica T6c] gi|122070658|sp|Q15QB3|SURA_PSEA6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|109702005|gb|ABG41925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas atlantica T6c] Length = 431 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 123/362 (33%), Gaps = 62/362 (17%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L + ++ L+ + +Q E +G++ ++ I +D D+ LA E Sbjct: 66 LRTQAIERLIVDSLQNQMAERMGIQISDPQLDQTIDNIA---REDGTTVEDL-RKNLASE 121 Query: 145 GINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLNNRH 201 G++ + Y + K L +V + + + E + +Y L + Sbjct: 122 GVSFEVYREQVRKELVTGEVRRANVRRRIYITPQEISNLVTLIDEQGGQQAEYH-LGHIL 180 Query: 202 VPAIADPSNAVLTQWFE---------KYKDNY-----------RAPEYKRISYILFDVHE 241 + +P++ +++ + + +A E + ++ + Sbjct: 181 IGFPPEPTDEDVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP 240 Query: 242 KEKKIEI---SNDEL------------QAEYEKNKEKYFSPEIRTVEQLVFP-----NQK 281 + S D+L + + ++ + + Sbjct: 241 TLFAEAVQGTSKDDLIGPIRSGAGFHVLKIIDFRGIEKVEVAELKSRHILIKPSVILSDE 300 Query: 282 EADEAFQS-----LKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +A++ L F +LA+E G +L LG + + + D++ SL Sbjct: 301 KAEKMLTEFRKELLAGEADFAELAKEHSADPGSALRGGDLGW-ADPNVYVPAFRDTLQSL 359 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA-SEKVKEDYKRL 391 + G+ + + + G+ + + + + ++ K+D A Q+ + +E+ + K + Sbjct: 360 -EVGEISQPVRSTHGWHLMQLMDKRVQDAT--EKRKEDKAYQLLFQRKFAEETEAWLKEM 416 Query: 392 EE 393 + Sbjct: 417 RD 418 Score = 60.8 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 28/244 (11%) Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------ 277 YR K + ++I I+ E+ E+ + ++ Sbjct: 128 YREQVRKELVTGEVRRANVRRRIYITPQEISNLVTLIDEQGGQQAEYHLGHILIGFPPEP 187 Query: 278 ------PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328 + A++ + L G +F ++A K+L LG + +P A++ Sbjct: 188 TDEDVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP-TLFAEA 246 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEK 383 + +K D I G+ + + + + V E+K I + KA + Sbjct: 247 VQGTSKD-DLIGPIRSGAGFHVLKIIDFRGIEKVEVAELKSRHILIKPSVILSDEKAEKM 305 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + E K L LA E+++ S D G +P L + Sbjct: 306 LTEFRKEL---LAGEADFAELAKEH---SADPGSALRGGDLGWADPNVYVPAFRDTLQSL 359 Query: 444 FGKD 447 + Sbjct: 360 EVGE 363 >gi|258623407|ref|ZP_05718411.1| survival protein SurA [Vibrio mimicus VM573] gi|258584373|gb|EEW09118.1| survival protein SurA [Vibrio mimicus VM573] Length = 431 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 66/379 (17%), Positives = 123/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + K Q N + L +++L+ L+ Sbjct: 28 DGVAVIVNSGVILQSDVDGALKTVKANAKQN-----NQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E IG++ D R+ I K+N+ + + +S +A+EG+ E+ Sbjct: 83 QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V E + K Sbjct: 176 ----------YKISHIQLRVEEGQDKS-------------------------------KA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEATFGELAQQY 326 >gi|254293162|ref|YP_003059185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica ATCC 49814] gi|254041693|gb|ACT58488.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica ATCC 49814] Length = 322 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 8/149 (5%) Query: 248 ISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 + +Q YE N ++ E V Q+V P + A+ + + F LA + Sbjct: 137 VDEASIQKYYETSINLKQLQLGEEYRVRQIVLPTLEAANAMIKQMTAETDFSVLASNRSI 196 Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 L LG + E P + LA++I + A G + G+V+ V +P Sbjct: 197 DEETRLEGGDLGFINPETAP-LPLANAIQNTAMGG-VSKPFETRKGWVVIKVVEKRPEPL 254 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390 + Q+++ I + + ++ +K+ +K Sbjct: 255 PTLQDLRPQIWDFLIASELERLLKKLHKD 283 >gi|317489254|ref|ZP_07947771.1| ppic-type ppiase domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832301|ref|ZP_08165300.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1] gi|316911655|gb|EFV33247.1| ppic-type ppiase domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486137|gb|EGC88591.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1] Length = 418 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 35/302 (11%) Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 G+E + I + D + + L++ + ++ +++ Sbjct: 45 GVEIAEDTITNYIQGV---REQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLK 101 Query: 167 MFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKYKDN 223 V G+ + +D+ N D + + S A + Q ++ K Sbjct: 102 EGVEEKGITVESSEIDEQIDKVKANYDTDEKWQAALDQAGMTEDSYRAEIEQKLKENK-- 159 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQK 281 + S+ ++ + Y + ++F ++ Sbjct: 160 --------------LYASFASDEDPSDADMLQYAQMYATAY--DGSKRSSHILFNSDDEA 203 Query: 282 EADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDF 338 A E L G+ F+ +E + + P + L +KG Sbjct: 204 TAQEVLDKLNSGELDFVDAVKEYSQDPGSVERDGDVGWNNPSNLAKEYKDGLEPLEKGQL 263 Query: 339 TPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKD----IANQMRITKASEKVKEDYKRLE 392 + ++ FG I +++ P S ++ ++ IA+ ++ TK E K+ Sbjct: 264 SGLVTTQFGIHIIKCTDVYKAPEEVTSLDQIPEEWISVIASSLKSTKQQEAYKKWLDETT 323 Query: 393 EF 394 E Sbjct: 324 EA 325 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 17/215 (7%) Query: 9 SRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 +T++ K V WGL SD S +V ++ + N + Sbjct: 2 KKTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVR 61 Query: 65 GMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 + G ++ + +++ ++ L + +E+ G+ + + +I Sbjct: 62 EQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQID 121 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + + D + + + L + G+ E Y + L + F PS+ + Sbjct: 122 KVKANYDTD-----EKWQAALDQAGMTEDSYRAEIEQKLKENKLYASFASDEDPSDADML 176 Query: 181 QAKRFYFENRSVDY----IVLNNRHVPAIADPSNA 211 Q + Y I+ N+ + + Sbjct: 177 QYAQMYATAYDGSKRSSHILFNSDDEATAQEVLDK 211 >gi|288958015|ref|YP_003448356.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510] gi|288910323|dbj|BAI71812.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510] Length = 485 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 46/324 (14%), Positives = 82/324 (25%), Gaps = 80/324 (24%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 V + V S + L G N E + L +++ L+ Sbjct: 52 GSEGIAAVVNDEVVSVSDVNARIRMALLNA----GGAANPETIQR--LTPQVMRLLIDER 105 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 Q + G+ + I R + +N Sbjct: 106 LQMQEAKRQGVTVSASEIDDAIKRIAE------------------QNRMN---------- 137 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + M P + L DQ + + + R + + Sbjct: 138 ---NQQLQEMLKRQNVPVSTLKDQIRALLA------WQKVMQRRIRQEVVVGEDEVDAAM 188 Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E+ K N PEY L + +DE++ Sbjct: 189 ERLKANIGKPEYLVAEIFLAVDSPDQ------DDEVRRN--------------------- 221 Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 A+ + +K+G F LA + + S LG + D S + Sbjct: 222 -----AERLVEEVKRGGNFAALARQFSQSAGAASGGDLGWVRSGEL--SPEVDKALSGMR 274 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKP 358 G + + + GY I V +P Sbjct: 275 GGQLSAPVRTATGYHILLVRGQRP 298 >gi|315607433|ref|ZP_07882429.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574] gi|315250865|gb|EFU30858.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574] Length = 490 Score = 77.0 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 90/285 (31%), Gaps = 42/285 (14%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 +++ + P + +Q + + ++D I ++ V + Sbjct: 82 EVMRLQGLAEGITFSGDPDCSIPEQIAVQKLFLHQAAIDSIEVSESEVAQGI---EGQIN 138 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVH----------------EKEKKIEISNDELQAEYE 258 W + + EY++ S + + +++S +++A + Sbjct: 139 SWIQMTGSREKLEEYRKQSITQMRQQMHDDYRNRLLIQKMRMKLVEDVKVSPAQVRAYFR 198 Query: 259 KNKEKY--FSPEIRTVEQLVFPNQKEADEA----------FQSLKKGKK-FIQLAEEQGK 305 F P VE L + +E + KG+ F LA + Sbjct: 199 DMPADSLPFVPTEVEVEILTSQPKISQEEINRVKDELRNYTDRVNKGETTFSTLARLYSE 258 Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +G ++ + D + A+ F+L + ++ FGY I + + + Sbjct: 259 DPGTARMGGELDYTGRGMLDPAFANVAFNLTDPKKISKIVESEFGYHIIQLIDKRGDKIK 318 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISR 406 V+ + + ++A + + ++ A S + + Sbjct: 319 ----VRHILRKPVVSSEALDASIHRLDSIGDDIRAGKFSFEAAAS 359 >gi|153803547|ref|ZP_01958133.1| survival protein SurA [Vibrio cholerae MZO-3] gi|297580585|ref|ZP_06942511.1| survival protein SurA [Vibrio cholerae RC385] gi|124120914|gb|EAY39657.1| survival protein SurA [Vibrio cholerae MZO-3] gi|297535001|gb|EFH73836.1| survival protein SurA [Vibrio cholerae RC385] Length = 431 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ L+ G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|206562085|ref|YP_002232848.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315] gi|198038125|emb|CAR54073.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315] Length = 280 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 11/236 (4%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 V V + +D + + + R + A A + + Sbjct: 39 VEAVVNDTPIARSDVDSMIEATGQTVTPELRAQAKRELIAQHLVEQAAEKANYGSRPEVN 98 Query: 225 RAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283 R + ++ + + +++ +++A Y+ E R + + + E Sbjct: 99 RVVMRARTVAATDLYLRDNVHPQAVTDAQVKARYDDIVANAAQFEYR-ADVIAVADPAEV 157 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF--------SKEYIPDVSLADSIFSLAKK 335 + LK+G F +A++ + + K + LA +I SL + Sbjct: 158 NALVAELKQGAAFDAVAKKYNTTPNGGVAQWVELRTPVAEGKTGGLPLPLAQAITSL-QP 216 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G I + I + + + +F+ K + Q+ + +L Sbjct: 217 GAVAGPIRVGNAFAIVKLDEKRATVVPTFEAAKNVLRQQLEGQAQQRAMTALVDKL 272 >gi|114799826|ref|YP_761850.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114740000|gb|ABI78125.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444] Length = 303 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 62/173 (35%), Gaps = 7/173 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 +++++ + Y + + +V +V ++EA+ + ++ G+ F L Sbjct: 129 QVTDEMIDRMYAEQVRLQQVNDEVSVAHIVTDTEEEAEAVWLRVQAGEAFESLVFNHSND 188 Query: 307 LS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 + + LG S +PD + + G+ P + I V + + Sbjct: 189 SATRMENGDLGFVSPNDLPDPY--PVVIANTPVGEVAPPFEAEGSWRIVKVKDRRTEPPK 246 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSID 414 + E++ +IA + +++ S ++ G E + ++ Sbjct: 247 TRDEMRPEIATFLTLSEVSRILRRLRTEARIEEGGGADYAPENAPEPSAKALT 299 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 46/145 (31%), Gaps = 14/145 (9%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 +V + + + E+ +++ + S RA ++LD L+ + Q Sbjct: 40 VAATVNGEAIYTADV------EVEAVARGLVVSGASLRAEDEAYK-QVLDQLIDQKLMAQ 92 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161 + +GLE D + + ++ V + E + ++ Y + + Sbjct: 93 EAKRLGLEKDPAGMRR-------LEMAQERIMGNLLVESVVAEQVTDEMIDRMYAEQVRL 145 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFY 186 V ++ + + Sbjct: 146 QQVNDEVSVAHIVTDTEEEAEAVWL 170 >gi|300728349|ref|ZP_07061713.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299774385|gb|EFI71013.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 714 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 60/506 (11%), Positives = 151/506 (29%), Gaps = 90/506 (17%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-----VVSVGRQKVPFSSF 56 L IRK R + + F+ +A S S V V +K+ + F Sbjct: 4 LGTIRK--RGVILICIIGFGLFAFI---AEEAFRSCESSKNDQRQQVGEVLGEKISVTDF 58 Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + +I + G E + + + + V ++ +++GL G + Sbjct: 59 QKLVDEYTEVIKMQQGTDNLPEE-QMNQVKDMVWNTYVQSKLVENEAKELGLTVTDGELQ 117 Query: 117 G--------EIARSPLFHGKDNKFSHDVFVSRL--------AREGINEKEY--------- 151 + ++P + + +F L A+ ++Y Sbjct: 118 NILNEGTNPMLLQTPFVNQQTGRFDASSLKKFLADYKSNQSAQNPQMAEQYQKIYNYWTF 177 Query: 152 -IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP-AIADPS 209 + + + + A + E S+ + A Sbjct: 178 IEKTLRQQTLAQKYQNLLAHCFISNPVEAKMAFKEENEESSIQLASFPYSDIQDAKIKVE 237 Query: 210 NAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + + +E+ K ++ E + + YI +++ S+ + Sbjct: 238 ESDMKAKYEELKARFKQAIESRDVKYIDV-------QVKASSSD---------------- 274 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328 R Q F + + L + ++ + G S++ + + +K+ P +A Sbjct: 275 -RLALQKQFAD------FQKKLAAAEDPTEILHKSGTSVNYLGI-PVAKDAFP-TDIAAQ 325 Query: 329 IFSLAKKGDFTPVIHG--SFGYVIAHVSNIKPSFTVSFQEVKKDIA-NQMRITKAS-EKV 384 + S+A G + V I + + E+ I ++++ A+ E Sbjct: 326 LDSMA-VGSTSAVKANAQDNTLNIIKLIAKQ--------ELPDSIQFRTIQVSGATPEAA 376 Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444 + + L G + ++++ + + + Y L Sbjct: 377 HKTADSIYTALQGGAEFEALAKKYGQTGEKTWMTTKQYQFAPSMDKDTKTYISAL----- 431 Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKE 470 + ++ +AL G+ + + + Sbjct: 432 -NNAAVNSYENIALGQGNVILQVVDK 456 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 110/345 (31%), Gaps = 19/345 (5%) Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333 K AD + +L+ G +F LA++ G++ + + F+ D S + A Sbjct: 375 AAHKTADSIYTALQGGAEFEALAKKYGQTGEKTWMTTKQYQFAPSMDKDTKTYISALNNA 434 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + + G G VI V + K V I + + + + Y ++ Sbjct: 435 AVNSYENIALGQ-GNVILQVVDKKGMINKYTAAV---IKKTI--DFSQDTYRAAYNKISS 488 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 F++ + +++ + + + VA I L VF D+ Sbjct: 489 FVSANQNGEDLLKNAAKNGYTVQEAND--MTTSLHYVANIHSTRDALKWVFDADEKEESP 546 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + + + + + A R L +V VK + K AE++ +K ++ Sbjct: 547 LYECGDNDHLLVMVLNKIHRAGYRDLSDPQVREMVKAEVIKDKKAEQIIAK-----VKGV 601 Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571 K + G + T V + P++ Sbjct: 602 KSIAAAKAKGAKVAPVNQVTFAAPVFIASVGASEPALSGAVSATAKGKFVSHPVKGNAGV 661 Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616 +F+VTN PV+ +K + + + + L V Sbjct: 662 YLFQVTNKTNRPVKFDEKAMEQKLRQRAMQYAGNFMNELYLNAKV 706 >gi|261250209|ref|ZP_05942785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP 102891] gi|260939325|gb|EEX95311.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP 102891] Length = 432 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 69/388 (17%), Positives = 124/388 (31%), Gaps = 99/388 (25%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V V V S S K L ++K G + SE L +++ + L+ Sbjct: 28 DTVAVIVNTSVVLQSDIDTSIKT-LKANAKKKGQSLPSEEI----LTEQVTEKLIVDTIQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +G+ D R+ I+ K+N+ + + + +A EG+N E+ + K + Sbjct: 83 QQEAERLGVRIDDNRLNEAISEI----AKNNQQTVEQLRASIASEGLNYAEFREQIRKEI 138 Query: 160 SRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + ++ V + +D + +NA + Sbjct: 139 AASEARNALVRRRINILPAEVDNLSELLAQE-------------------TNATVQ---- 175 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I V++ + K EI Sbjct: 176 -----------YKIGHIQLRVNDGDDKSEI------------------------------ 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + +A E + L G F +A K+L G KE +P AD I L K Sbjct: 195 -EAQAKELVKELNNGADFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KLQNK 251 Query: 336 GDFTPVIHGSFGYVIAHVSN------------------IKPSFTVSFQEVKKDIANQMRI 377 G G+ I + + IKP+ +S + VK + N +R Sbjct: 252 GSVIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGVKNTLNNIIRQ 311 Query: 378 TKASEK-VKEDYKRLEEFLALGTSMDEI 404 KA + E ++ + E+ Sbjct: 312 IKAGDATFGELAQQYSQDPGSAAQNGEL 339 >gi|260878025|ref|ZP_05890380.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034] gi|308089886|gb|EFO39581.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034] Length = 427 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 115/378 (30%), Gaps = 88/378 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + K Q G + S L +++++ L+ Sbjct: 25 DKVAVIVNDGVILQSDINTAMKTLQANARQS-GKSLPSASV----LKEQVVEKLIIDTLQ 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D R+ IA ++N S + + + EG++ E+ Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNNQSVEELAASVQAEGLSYPEF-------- 127 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 R + R R ++ + + A +NA + Sbjct: 128 -REQIRKEIAAS----------EARNALVRRRINILPAEVDSLADQLAKETNATVQ---- 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I + + K E+ Sbjct: 173 -----------YKIGHIQLRFTDGQDKSEV------------------------------ 191 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + +A + L G F ++A K +L G KE +P AD I + K Sbjct: 192 -EAQAKALVKKLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390 G G+ I + ++K TV+ EV I + A ++ E +R Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKNQLNEFVRR 308 Query: 391 LEEFLALGTSMDEISRRE 408 ++ A + +++ + Sbjct: 309 IK---AGEATFAQLASQY 323 >gi|330836698|ref|YP_004411339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta coccoides DSM 17374] gi|329748601|gb|AEC01957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta coccoides DSM 17374] Length = 92 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 ++ + AD + +K G F LA S LG F + Sbjct: 4 KASHILVKEKALADRLYAQIKGGADFSSLARTHSTCPSKSKGGDLGWFGPGKMVG-EFER 62 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ L+ G + I FGY I + ++ Sbjct: 63 AVQKLS-HGAVSAPIRTQFGYHIIKKTGLR 91 >gi|327312390|ref|YP_004327827.1| hypothetical protein HMPREF9137_0079 [Prevotella denticola F0289] gi|326946353|gb|AEA22238.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 715 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 79/636 (12%), Positives = 195/636 (30%), Gaps = 73/636 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L IR S+ + + + FL + S +G + + +K+ + Sbjct: 4 LGKIR--SKGGMLVAAIGLALFAFL---AEEGFRSCNGIKGEARQQIGEILGEKISVQDY 58 Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + I + E + ++ LVS L E +GL + Sbjct: 59 QKLIDEYQSAIKFTMQRDNLTEEELNQ--VKDQVWQQLVSNRVLQADAEKVGLTVTEQEI 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 +A++P + + +F + L G N+ + Sbjct: 117 QNVLNDGTNPMLAQTPFVNQQTGRFDVNALKQFLD--GYNKAKSEKS-----------PQ 163 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + L K + Y L V + + + +++ Sbjct: 164 LDQMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNNEES---- 216 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVE----QLVFPNQ-- 280 +++ + + + I+I++++L+A+Y++ K + E R ++ Q+ Sbjct: 217 -QIQLASLAYSSVKDAD-IKITDEDLKAKYDELKPAFRQNVETRDIKFVDYQIKASTADR 274 Query: 281 ----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 KE + + L + + G + + + SK Y +A I SLA Sbjct: 275 NAVVKEMNGLQKQLATAADPATVVSKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGT 334 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + ++ + +++ LA Sbjct: 335 TGVTENKQDNTLNIIRVLS--KAQLPD----SVQFRQIQVAANTPDEARAKADSIQKALA 388 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G + +++R + + Y LL ++ + Sbjct: 389 GGADFEALAKRYGQTGEKVWFTGQQYEAAPSMSQDNRTYINALLS------GEVNATQNI 442 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 AL G+ + +Q+ + + V+ + K T E ++ ++ V + + + Sbjct: 443 ALAQGN-VILQVLDKKAMTTKTTAAVIKKLIDFSKA--TRNEAYNRFSEFVAKNTTA-AD 498 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 G + + N I+ ++ D + +F V +++ Sbjct: 499 LEKNASKYGYRVQSLNDISTAEHYVAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLV 558 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 V N+ + P + + + +++ ++++ A L Sbjct: 559 IVLNA-IHPQGFRAWDDAQVKEILKREVMKDKKAEL 593 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 61/379 (16%), Positives = 122/379 (32%), Gaps = 48/379 (12%) Query: 262 EKYFSPEIRTVEQLVFPN------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ + +AD ++L G F LA+ G++ F Sbjct: 353 SKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT---GEKVWF 409 Query: 316 SKEYIPDVSLADSIFSLAKK----------GDFTPVIHGSF--GYVIAHVSNIKPSFTVS 363 + + ++ S+++ G+ + + G VI V + K T + Sbjct: 410 TGQQY------EAAPSMSQDNRTYINALLSGEVNATQNIALAQGNVILQVLDKKAMTTKT 463 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 V I + +KA+ E Y R EF+A T+ ++ + + ++ Sbjct: 464 TAAV---IKKLIDFSKATR--NEAYNRFSEFVAKNTTAADLEKNASKYGYRVQSLNDIST 518 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 VA I L +F + + + + P R ++ Sbjct: 519 AEHY--VAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLVIVLNAIHPQGFRAWDD-- 574 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----N 539 VK+ K E + K +L++ K G + + GA + T NQI Sbjct: 575 AQVKEILKR----EVMKDKKAELLMAKLK-GVSSIAAAQAKGAKVSTVNQITFASPAFVQ 629 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQM 597 V + P++ VF+V + G + + Q Sbjct: 630 ATGAVEPALSGAVAATAAGKFSKAPVKGNAGVYVFQVVKKAMRAGSKYNELMVMQQTAQQ 689 Query: 598 MNKDLLDSVIAYLKSQYSV 616 + ++ + + L + +V Sbjct: 690 NMQ-MVGNFMQDLILKANV 707 >gi|193214032|ref|YP_001995231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton thalassium ATCC 35110] gi|193087509|gb|ACF12784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton thalassium ATCC 35110] Length = 728 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 60/437 (13%), Positives = 135/437 (30%), Gaps = 65/437 (14%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K+F LF ++ +L + V + + + + G Sbjct: 12 KLFFAALFSASILTACGGSLSQLP----VAK-----IEQPGWEYAVDLQEFESKYNDGTF 62 Query: 75 VNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 + R + + LD ++ + +D G + E+ Sbjct: 63 FSDTLRRDTFAAYQDFLDKYITFRLKVKDAQDRGFG-QDPSLLQELKD------------ 109 Query: 134 HDVFVSRLAREGINEK--------EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 + ++LA + E+ + D + ++ + ++ + P++ L K Sbjct: 110 ---YRAQLAEPYLMERAVMEKNLRDLYDKQQEEINASHILALVSSAADPADTLRAYQKIM 166 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 + ++ + DPS K N + Y D K Sbjct: 167 EARKLILAGAPFDSVALAFSEDPSVRQ-------NKGNLGYFSGGMMVYQFEDAAYGGKV 219 Query: 246 IE-ISNDELQAEYEKNKEKYFSPEIR--TVEQLVFPNQK------------EADEAFQSL 290 E + + Y K P+ + ++ K +A+ + + Sbjct: 220 GELVGPFRTRYGYHIVKIYDRRPKTQPIRASHIMVALPKSPTPSDTLKAYRKAESILRRI 279 Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +KG+ F +A+++ LG F + + F+L + GD +P+I F Sbjct: 280 QKGEDFQSIAKKESDDKLSGARGGDLGLFGLNRMVKP-FETAAFALKQAGDLSPIIRTPF 338 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 GY I ++ + S+ E K+ + + SEK+K + + L E Sbjct: 339 GYHIILLTGREEP--KSYDESKELLKRLLSRN--SEKLKHERDLFIQQLKETYHFKENES 394 Query: 407 REKIVSIDLPLVDFAGK 423 +++ + + Sbjct: 395 ALPMLTAKIDSNSTFAQ 411 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 15/212 (7%) Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI------- 246 +++ V + A +++ ++ +K ++R E ++S I+ I Sbjct: 497 LFKVSDETVWSQAAATDSAGRAYYATHKGDFRLGERMKVSEIVVSEKSLADDIYNELTQN 556 Query: 247 -------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + ++Q + + + QL F +E Q + + F L Sbjct: 557 IRQRDVVSAQDVKIQKRKIQAQLRKLKKRRDKKSQLKFQKLQEQLTGLQVDDQPRSFEAL 616 Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 A ++ + + + D +F G + Y I + + P Sbjct: 617 AARYSETADSLGSAESAIFNRGENRRVDKLFG-KPVGFVAAPESINERYRIMRLDIMLPP 675 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 +++E + +I + ++ E RL Sbjct: 676 TEKTYEEARTEIFSILQEQNTRALETEWVNRL 707 >gi|326575894|gb|EGE25817.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis CO72] Length = 434 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 ++ S V V + + S + + + QK G V ++A+++ L Sbjct: 23 QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149 D L++ I G+ + + ++ + G + S F S+L E + Sbjct: 77 DELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYA 133 Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197 + + + + +R ++ +D R V Y +L Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193 Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 V S + + Y + + + I+ Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253 Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281 K + ++ ++ K ++ ++ ++ Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + +Q L++G F LA SLG ++ + + + AK GD Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 F+ FG+ I V++IK + DI Q R A E Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406 >gi|317046370|ref|YP_004114018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b] gi|316947987|gb|ADU67462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b] Length = 93 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++ +A L+KG F QLA++ S LG F K + + ++F Sbjct: 9 HILVKDEAKAKALLAQLEKGANFQQLAKKHSTCPSGRNGGDLGEFRKGQMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + +FGY I V Sbjct: 68 SCPLLQP---YGPVKTAFGYHIIKV 89 >gi|229823923|ref|ZP_04449992.1| hypothetical protein GCWU000282_01227 [Catonella morbi ATCC 51271] gi|229786656|gb|EEP22770.1| hypothetical protein GCWU000282_01227 [Catonella morbi ATCC 51271] Length = 325 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 13/196 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 K+I+ S+ ++ Y + + ++ ++EA + L G+ F +L Sbjct: 128 EVVSKQIDQSDATIEDYYNNTYQP-----KMEAQHILVDTEEEAKDIISKLDAGENFDEL 182 Query: 300 AE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+ + G + L F+ + D + A + FGY I I Sbjct: 183 AKTYSKDGSAQQGGLLSPFTSGQMVK-EFEDGVKGQANGEYTKTPVKSKFGYHIIK--TI 239 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416 F ++K D+ + +K ++ + ++ L + K +L Sbjct: 240 NNGEKKPFADIKDDVKKEYLDSKLKDQ--KFSYKIIGKLIEAAKVQIDDADLKDAVKELV 297 Query: 417 LVDFAGKDVKGKEVAA 432 + DV ++ + Sbjct: 298 DLANQPDDVSSQDAPS 313 >gi|261749602|ref|YP_003257288.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497695|gb|ACX84145.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 710 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 94/284 (33%), Gaps = 35/284 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 LE IRK W+ + ++ + F++ F SS V + + +++ ++ Sbjct: 4 LEKIRK--NPWILFFLIGIVMLAFILDPHVLFKFFAEKSSIFGKVNGENISIKEYVDCFQ 61 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 L + Q L K+ + L+ L+Q +G++ W I+R Sbjct: 62 F-LKQLRQ---------EESDSHLKKETWNLLIHEKLLNQQAMKLGIQNTKKDFWDAISR 111 Query: 122 ------SPLFHGKDNKFSHDVFVSRLAR----EGINEKEYI----------DHYTKMLSR 161 P K F L ++ + + +K + Sbjct: 112 QSIYSYIPELQDKFGNLDLKKFQLYLKNLENASHVSHSQMEIEKNVWSYEKNSISKRILA 171 Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFE 218 V M + G+ S + + + +DYI + + + + + + Sbjct: 172 KKYVEMLMYGLNTSLIEGELNYKEKNFFSIIDYIFIPYSEIEHKYNIFLIGKNEIENFIK 231 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 K+K Y+ + +S+ + + + ++++ + K K Sbjct: 232 KHKFLYKRENLRSLSFAICRSKPSLEDEKNMKNKMEKLFHKFKS 275 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 30/251 (11%) Query: 273 EQLVFP-----------NQKEADEAFQSL-----KKGKKFIQLAEEQGKSL-----SDIS 311 ++ +KEA+E + K KF +L ++ L + S Sbjct: 346 SHILISHKEAIRSSNKRTKKEAEEIANKVYKILQKDPSKFEELVRKKSDDLINAKKNQGS 405 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371 LG + + IF K + FGY I + + S + + Sbjct: 406 LGWLKYNEQNSIGKFN-IFDSENKKRMIGLTETQFGYHIIRIDD--KSVPKPAYQFAVIV 462 Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEI--SRREKIVSIDLPLVDFAGKDVKGKE 429 + K +++ ++ I +R+E +I L V A D+ Sbjct: 463 KTLIPSKKTEDRLYSRVRKFFGKNKNHKLNIFINNARKEGYETIFLKYVRSAQWDIDD-- 520 Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489 ++++ F K+ H + + Y+ V + + +EE+ ++ Sbjct: 521 -LKTEVDKEIIDWSFDKNRKEGDCHIFSTSNKDYIIVFLSKIQKEGF-SMEEIKNNLIPF 578 Query: 490 WKTVKTAEEVS 500 K K +S Sbjct: 579 LKKEKINRLLS 589 >gi|114048604|ref|YP_739154.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7] gi|121956474|sp|Q0HS08|SURA_SHESR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|113890046|gb|ABI44097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7] Length = 434 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 115/382 (30%), Gaps = 71/382 (18%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N L ++++ L+ Q + IGL ++ I K Sbjct: 56 RAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189 + ++ EG++ +Y + + ++ ++ ++ S + + E Sbjct: 112 TVAQMQQKIESEGLSFGQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171 Query: 190 RSVDY------IVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRIS-------- 233 + V+Y I + N + S+ E+ K +++R S Sbjct: 172 KDVEYQIGHILIDVPNNPNSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGG 231 Query: 234 ---YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQL 275 Y+ + I+ + + + + E + Sbjct: 232 IWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHI 291 Query: 276 VFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPD 322 + ++ A + ++ G+ KF LA + + + G +++ I Sbjct: 292 LLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYV 351 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 A ++ SL+ + + G+ I + + K D +Q +A + Sbjct: 352 PEFAQTLNSLS-PDQISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAHQ 400 Query: 383 KV------KEDYKRLEEFLALG 398 + +E L+E A Sbjct: 401 LIFRRKFNEELQNWLDEMRADA 422 >gi|325205366|gb|ADZ00819.1| surA/PPIASE domain protein [Neisseria meningitidis M04-240196] Length = 387 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 172 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 231 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 232 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 291 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 292 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 349 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 350 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 378 >gi|325203397|gb|ADY98850.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240355] Length = 366 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 151 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 210 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 211 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 270 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 271 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 328 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 329 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 357 >gi|325199485|gb|ADY94940.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76] Length = 360 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 145 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 204 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 205 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 264 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 265 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 322 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 323 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 351 >gi|325197566|gb|ADY93022.1| PPIC-type PPIASE domain protein [Neisseria meningitidis G2136] Length = 360 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 145 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 204 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 205 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 264 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 265 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 322 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 323 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 351 >gi|325145275|gb|EGC67554.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis M01-240013] Length = 369 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 154 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 213 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 214 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 273 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 274 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 331 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 332 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 360 >gi|325143121|gb|EGC65468.1| PPIC-type PPIASE domain protein [Neisseria meningitidis 961-5945] Length = 363 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 148 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 207 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 208 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 267 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 268 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 325 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 326 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 354 >gi|325141118|gb|EGC63621.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis CU385] Length = 357 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 142 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 201 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 202 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 261 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 262 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 319 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 320 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 348 >gi|325135085|gb|EGC57713.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M13399] Length = 363 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 148 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 207 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 208 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 267 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 268 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 325 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 326 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 354 >gi|325128991|gb|EGC51842.1| surA/PPIASE domain protein [Neisseria meningitidis N1568] Length = 390 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 175 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 234 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 235 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 294 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 295 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 352 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 353 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 381 >gi|261391812|emb|CAX49267.1| putative peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase; PPIase; rotamase; cyclophilin; FKBP65) [Neisseria meningitidis 8013] Length = 354 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 139 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 198 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 199 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 258 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 259 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 316 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 317 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 345 >gi|254674145|emb|CBA09929.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha275] Length = 378 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 163 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 222 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 223 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 282 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 283 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 340 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 341 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 369 >gi|15676205|ref|NP_273337.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58] gi|7225507|gb|AAF40735.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58] Length = 348 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 133 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 192 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 193 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 252 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 253 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 310 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 311 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 339 >gi|238024473|ref|YP_002908705.1| hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1] gi|237879138|gb|ACR31470.1| Hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1] Length = 278 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 31/187 (16%) Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + PS A ++ ++ K+K +Y +S+IL +EK Sbjct: 112 DYFMRQITPSEAEISAYYNKHKSDYNL---YSLSHILVK------------------FEK 150 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319 + + + + +E F +A LK G F +LA + + G E Sbjct: 151 DPSNLPAEQAKKIEAQAFN---KAQAIEARLKAGADFHELAAQLSDDANSRIDGGRVPET 207 Query: 320 IP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + I + AK+GD TP + SFGY I V + PS + D+ N +R Sbjct: 208 MARFLAPAFKPEILA-AKQGDITPPLKSSFGYHIIMVEGVVPS---DMARNRADVINDIR 263 Query: 377 ITKASEK 383 K +EK Sbjct: 264 EGKLAEK 270 >gi|42519550|ref|NP_965480.1| peptidylprolyl isomerase [Lactobacillus johnsonii NCC 533] gi|46396699|sp|P60750|PRSA1_LACJO RecName: Full=Foldase protein prsA 1; Flags: Precursor gi|41583839|gb|AAS09446.1| protease maturation protein precursor [Lactobacillus johnsonii NCC 533] gi|329667789|gb|AEB93737.1| protease maturation protein precursor [Lactobacillus johnsonii DPC 6026] Length = 298 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 17/228 (7%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G + S + ++ IV + D + + + + KYK Y + Sbjct: 36 GKITESQYYDKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95 Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280 + + ++ ++ L+ EK K + PE+ TV+ ++ + Sbjct: 96 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEV-TVQHILVSKK 154 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335 A++ + L+ G F +LA++ L +F S + D S + F L Sbjct: 155 STAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 T + +GY + + IK +F+E KK I NQ+ + + ++ Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTFKEHKKQIDNQIYQSMSEDQ 260 Score = 43.4 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 7/131 (5%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560 + V++ ++G +F+ + K T N + D+ + + F + Sbjct: 157 AEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216 Query: 561 KCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616 P++ Y V K+ + K + + + Q M++D ++ SVIA + + V Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTFKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRADV 276 Query: 617 TVHDNLIQRYL 627 ++ D ++ L Sbjct: 277 SIKDKDLKNVL 287 >gi|28897112|ref|NP_796717.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633] gi|153838965|ref|ZP_01991632.1| chaperone SurA [Vibrio parahaemolyticus AQ3810] gi|260361686|ref|ZP_05774713.1| chaperone protein SurA [Vibrio parahaemolyticus K5030] gi|260896920|ref|ZP_05905416.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466] gi|260903392|ref|ZP_05911787.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037] gi|81728608|sp|Q87ST4|SURA_VIBPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|28805321|dbj|BAC58601.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633] gi|149747553|gb|EDM58485.1| chaperone SurA [Vibrio parahaemolyticus AQ3810] gi|308088746|gb|EFO38441.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466] gi|308109029|gb|EFO46569.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037] gi|308115514|gb|EFO53054.1| chaperone protein SurA [Vibrio parahaemolyticus K5030] gi|328471910|gb|EGF42787.1| survival protein SurA [Vibrio parahaemolyticus 10329] Length = 427 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 116/378 (30%), Gaps = 88/378 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + K Q G + S L +++++ L+ Sbjct: 25 DKVAVIVNDGVILQSDINTAMKTLQANARQS-GKSLPSASV----LKEQVVEKLIIDTLQ 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D R+ IA ++N S + + + EG++ E+ Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNNQSVEELAASVQAEGLSYPEF-------- 127 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 R + R R ++ + + A +NA + Sbjct: 128 -REQIRKEIAAS----------EARNALVRRRINILPAEVDSLADQLAKETNATVQ---- 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I + + K E+ Sbjct: 173 -----------YKIGHIQLRFTDGQDKSEV------------------------------ 191 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + +A + L G F ++A K +L G KE +P AD I + K Sbjct: 192 -EAQAKALVKKLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390 G G+ I + ++K TV+ EV I + A +++ E +R Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308 Query: 391 LEEFLALGTSMDEISRRE 408 ++ A + +++ + Sbjct: 309 IK---AGEATFAQLASQY 323 >gi|54307618|ref|YP_128638.1| putative survival protein SurA [Photobacterium profundum SS9] gi|81697526|sp|Q6LV39|SURA_PHOPR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|46912041|emb|CAG18836.1| putative survival protein SurA [Photobacterium profundum SS9] Length = 434 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 77/492 (15%), Positives = 144/492 (29%), Gaps = 97/492 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + +++ N L +++++ L+ Sbjct: 28 DKVVTLVNDSVILQSDVNAMLQTVRINAAEQ-----NQPLPDDALLTEQVMEKLIIETLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E G+ D R+ +A K+ + + L + GI+ + + + + Sbjct: 83 LQQAEQFGIRIDDTRLDQAVAEI----AKERELTIPQLQKELEKSGISYSIFREQMRRDM 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + E R++ + +P + L Sbjct: 139 T-------------------------ASEARTIQ-VRRRINILPQEVEMLAEQL------ 166 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K + IS+I V E K E R Sbjct: 167 NKQTLQTV-QFNISHIQLRVEEGATK----------------------EQRE------ET 197 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 Q++A + LK G F LA K+L G +E +P AD I S KG Sbjct: 198 QQQAQQIVDELKNGADFANLAYSYSKGPKALQGGEWGWMRQEEMP-TIFADQIKS-NGKG 255 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRL 391 GY I V+++K TVS EV I + A ++++ Sbjct: 256 AIIGPFRSGVGYHIIKVNDVKGLETVSVTEVNARHILIKTSVILSDDGAKRQLEKAR--- 312 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 ++ LA + + + +S D G+ +P + + + P Sbjct: 313 QDILAGRQTF---ADEAQKLSSDPGSAANGGELGWQTPDLYVPEFKDKIETL-----PKG 364 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511 + V++ + DR + + + K EE + +L Sbjct: 365 TISEPFKTVHGWHIVEVLDRRNV-DRTDAAMKNRAYRILFSRKFNEEAQAWLQEL----- 418 Query: 512 KEGKNFRDIGKN 523 + G +G N Sbjct: 419 RAGAYIEQLGTN 430 >gi|316985214|gb|EFV64166.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76] Length = 359 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 144 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 203 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 204 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 263 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 264 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 321 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 322 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 350 >gi|161870782|ref|YP_001599955.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442] gi|161596335|gb|ABX73995.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442] Length = 353 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 138 IQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 197 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 198 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 257 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 258 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 315 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 316 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 344 >gi|121606645|ref|YP_983974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] gi|120595614|gb|ABM39053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] Length = 282 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 22/177 (12%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK---------EADEAFQSL----KKG 293 + + DE Q YE N ++ + V ++F A++A L Sbjct: 99 QPNEDECQRYYEANPSQFMVGQALHVRHILFAVTPGVNVHALTIHAEKALLELTRKDASP 158 Query: 294 KKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF----SLAKKGDFTPVIHGSF 346 ++F+QLA E S LG + LA+ +F S G +IH F Sbjct: 159 ERFVQLAAELSNCPTSAQGGDLGWVGPDDCA-PELANELFHQKHSQWGMGVHPRLIHTRF 217 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-KASEKVKEDYKRLEEFLALGTSMD 402 G+ I V N + T ++ EV++ IA + + +A + + E L G +++ Sbjct: 218 GFHIIEVLNRRAGKTPAYAEVRERIATLLAVQSRARALHQYMSLLIGEALVEGIALE 274 >gi|302381139|ref|YP_003816962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas subvibrioides ATCC 15264] gi|302191767|gb|ADK99338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas subvibrioides ATCC 15264] Length = 317 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 6/149 (4%) Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306 I++ +Q Y++ + E V ++ + EAD L +G F +A+E+ Sbjct: 128 INDQAVQTLYQEQLRLARTSEEIRVRLILSRTKPEADAVIGILGQGASFEAVAQERSIDE 187 Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 S LG + + +P A G G+ + V + + + Sbjct: 188 ATRFSGGDLGYSTADVMPQAYAG--ALRDAPAGSTVGPFQTEGGWAVLRVEDRRRESPPT 245 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + I + + ++E + + Sbjct: 246 LDQARPQIVRYLTYEGVRQLLEELRGKAK 274 Score = 46.1 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 26/202 (12%) Query: 7 KASRTWVAKIFL-VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 + SR + I VL + G D G V V Q + S ++ + Sbjct: 2 RHSRNPLVLIAFSAVLALAACGRGGGDDQPPEPGDRAVARVQDQTIWASDVK---REAVA 58 Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH------GRVWGEI 119 G ++ + L +++LD +V L + E GL+ I Sbjct: 59 QGLVGEGEPLDI----TSNLFRRVLDEVVDQKLLAREAERRGLDNSALAQRRLEATRERI 114 Query: 120 ARSPLFHG-KDNKFSHD----VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 L + + + ++ +L +E +LSRT V G+ Sbjct: 115 LGDMLVENVVNGRINDQAVQTLYQEQLRLARTSE---EIRVRLILSRTKPEADAVIGILG 171 Query: 175 SNLLLDQAKRFYFENRSVDYIV 196 + + RS+D Sbjct: 172 QGASFEAVA----QERSIDEAT 189 Score = 39.2 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 45/144 (31%), Gaps = 8/144 (5%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 ++R+ + K + + L G S + +++ I F+G D+ Sbjct: 148 EEIRVRLILSRTKPEADAVIGILGQGASFEAVAQERSID----EATRFSGGDLGYSTADV 203 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P R D P +G + +++++ L++ + + Sbjct: 204 MPQAYAGALR----DAPAGSTVGPFQTEGGWAVLRVEDRRRESPPTLDQARPQIVRYLTY 259 Query: 493 VKTAEEVSSKANQLVLEYSKEGKN 516 + + + ++ + Sbjct: 260 EGVRQLLEELRGKAKVDVLLAAEG 283 >gi|229530289|ref|ZP_04419677.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)] gi|229332062|gb|EEN97550.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)] Length = 431 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAKEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|330836446|ref|YP_004411087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta coccoides DSM 17374] gi|329748349|gb|AEC01705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta coccoides DSM 17374] Length = 354 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 46/385 (11%), Positives = 108/385 (28%), Gaps = 91/385 (23%) Query: 40 SSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 S V + K+ + ++ ++L+ +++ Sbjct: 29 SQPAAVVNLTKNTVITTEQLNAKVKEYQEAAATAGTAAPDAL---------RVLEIMIND 79 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 + Q G+ +V + L E++Y T Sbjct: 80 ELVMQGSARDGIVITDAQVSQLVVDQ---------------KQTL------EQQYGVTLT 118 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIAD-PSNAVLT 214 + V F ++ ++ E VD Y+ V A P++ ++ Sbjct: 119 DAQFQQAVTAQFGS--------MEAFRKALKEQLLVDTYVRKAKSDVIAQVKQPTDTEIS 170 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 +F + + + +PE R+S++ E + ++ Sbjct: 171 SFFRQRRSEFFSPESIRLSHVFIPFAEGTDAQKTNDA----------------------- 207 Query: 275 LVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVS--------- 324 N+ S++ G F + ++ + + LG D S Sbjct: 208 ----NKATLISLVSSIRSGSLTFEKAVQDYSQDAASRQLGGSIGWLTADNSDVVASLGQG 263 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---------VKKDIANQM 375 D+ F+L + G + V+ + GY I + + + + V++ I + Sbjct: 264 FYDAAFAL-EVGQISNVVESASGYHILKSVSHLDAKMLGLDDTINPETTVTVREYIRQYL 322 Query: 376 RITKASEKVKEDYKRL-EEFLALGT 399 L ++ +L Sbjct: 323 LAQNQQTAYVNAVNALIQDLRSLAN 347 >gi|229512625|ref|ZP_04402094.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21] gi|229350302|gb|EEO15253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21] Length = 431 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 61/379 (16%), Positives = 123/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V V + S ++ K Q + L +++L+ L+ Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQN-----KQPLPQETVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------TQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V + + K Sbjct: 176 ----------YKISHIQLRVDDGQDKS-------------------------------AA 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ L+ G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + ++K TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII--LSDEGAQKQLNEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ + E++++ Sbjct: 311 RIKN---GEVTFAELAQQY 326 >gi|238798858|ref|ZP_04642326.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia mollaretii ATCC 43969] gi|238717308|gb|EEQ09156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia mollaretii ATCC 43969] Length = 98 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 14 HILVDDEKQANDILAQLNNGADFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 72 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 73 SCELLQP---YGPVKTQFGYHIIKV 94 >gi|156741601|ref|YP_001431730.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus castenholzii DSM 13941] gi|156232929|gb|ABU57712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus castenholzii DSM 13941] Length = 337 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 28/253 (11%) Query: 152 IDHYTKMLSRTDVVGMF--VGGMRPSNLLL-DQAKRFYFENRSVDYIVLNNRHVPAIADP 208 + G+ S+ + +Q +RF + ++ I L + P Sbjct: 67 EQELVSQFIDQQLTLGLARQRGITVSDADVNEQIERFRQQIQTGSGISLEQAIQEQLGLP 126 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY--EKNKEKYFS 266 + +PE++ + + + +S +++ E + Sbjct: 127 GES--------------SPEFRLFVTYFLARQKLGETL-VSEVDIRQRISDEVMADTQRM 171 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDV 323 ++ TV ++ + EA + + L KG+ F LA+E + G + Sbjct: 172 VDVATVAHILVATEDEAKQVIERLDKGEDFADLAKELSQDPGSAENGGVYENIQRGQFVP 231 Query: 324 SLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++F + G+ T + FG+ + + + + + I ++ A E Sbjct: 232 EFDKAMFEDLQPGETTKTPVQTQFGWHVIRLVSRGEAPALDPANAPAVIEQRV----AQE 287 Query: 383 KVKEDYKRLEEFL 395 E LE L Sbjct: 288 LPFEQQSALERLL 300 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 46/162 (28%), Gaps = 5/162 (3%) Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96 +GS TV V + + + Q+ G + ++++++ + Sbjct: 20 GAGSQTVARVDNVTLTRQELDQRIDRIEKGLQQQAGTGF--PLPSRLDIEQELVSQFIDQ 77 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARS-PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 G+ V +I R +L G + E+ Sbjct: 78 QLTLGLARQRGITVSDADVNEQIERFRQQIQTGSGISLEQAIQEQLGLPGESSPEFRLFV 137 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 T L+R + V + + D+ R VD + Sbjct: 138 TYFLARQKLGETLVSEVDIRQRISDEVMA--DTQRMVDVATV 177 >gi|329120541|ref|ZP_08249205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC BAA-1200] gi|327461280|gb|EGF07612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC BAA-1200] Length = 290 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 93/237 (39%), Gaps = 18/237 (7%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV--LTQWFEKYK 221 + +G + +++ +A+R + + N A + ++ Q +E Y+ Sbjct: 57 IRSELLGDIVTRTIVVQEARRLKLDQGKEYKAAIENARKAAQKEGADKKPGFKQQWEDYQ 116 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + + + +S+ E + YE+ + Y + +++ + Sbjct: 117 NELLNQAFV---------AHIVRTQPVSDAEARKNYEEMQNFYKGSSEVQIGEILTQKKD 167 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS------IFSLAKK 335 +A++A + LK K F++ A + G +KEY P L + KK Sbjct: 168 DAEKAIKDLKANKPFVETARKYSADPQVKQTGGINKEYDPLKDLEAAAPPVYNAVKDLKK 227 Query: 336 GDF-TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G F T + G+ Y + ++++ + +F+++K +I + K ++ + ++ Sbjct: 228 GQFTTTPVEGNGAYGVFYINDKRSVQIPAFEQIKANITRSLMQQKVNQAISSLTEKA 284 >gi|51246936|ref|YP_066820.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54] gi|50877973|emb|CAG37813.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54] Length = 333 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 50/358 (13%), Positives = 100/358 (27%), Gaps = 72/358 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + + S + I++ + + + L++++ + Sbjct: 37 DKVVAVVNNEVITLSELNAETAEIKHKITET--APADQQEEAMAEAREGALNSIIDKKLI 94 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ + V G IA L Sbjct: 95 AQKAKEARVFVSDEEVEGTIAGI-------------------------------QKRASL 123 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 SR + N + + + + ++Y + + + + +++EK Sbjct: 124 SREQFIEELKKSGLSFNTYQNNIRSQLLQRKVINY------DIRSKIVIPESQIREYYEK 177 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 Y Y+ LQ ++ +KE+ S E Sbjct: 178 ---EYTINAQDGEYYL-----------------LQIGFDWDKEEAGSKEK---------T 208 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-IFSLAKKGDF 338 + A KG+ F LAE+ S G I D+S + S K G+ Sbjct: 209 LQFAKRIHAIAVKGQDFGALAEKYSTLPSAKDRGDIGFFAIDDMSENMARAISPLKPGEV 268 Query: 339 TPVIHGSFGYVIAHV---SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + +I GY V + VK+ I ++ + + K L+E Sbjct: 269 SNIIESPAGYQFFKVLSGDQNNSISKAPYATVKEVIQAKLFEIQMQKDFSSWVKELKE 326 >gi|227889497|ref|ZP_04007302.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200] gi|227849975|gb|EEJ60061.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200] Length = 298 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 17/228 (7%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G + S + ++ IV + D + + + + KYK Y + Sbjct: 36 GKITESQYYDKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95 Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280 + + ++ ++ L+ EK K + PEI TV+ ++ + Sbjct: 96 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKSYQPEI-TVQHILVSKK 154 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335 A++ + L+ G F +LA++ L +F S + D S + F L Sbjct: 155 STAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 T + +GY + + IK +F+E KK I NQ+ + + ++ Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTFKEHKKQIDNQIYQSMSEDQ 260 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 23/174 (13%) Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDI 520 IK+ PA+++ K WK+ + V + V++ ++G +F+ + Sbjct: 124 HIKKITPAQEK----------KAWKSYQPEITVQHILVSKKSTAEDVIKQLQDGGDFKKL 173 Query: 521 GKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 K T N + D+ + + F + P++ Y V K+ Sbjct: 174 AKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMI 233 Query: 578 NSKVGPV--QEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627 + K + + + Q M++D ++ SVIA + + V++ D ++ L Sbjct: 234 KHPAKGTFKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRADVSIKDKDLKNVL 287 >gi|168702269|ref|ZP_02734546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata obscuriglobus UQM 2246] Length = 420 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 37/362 (10%), Positives = 100/362 (27%), Gaps = 79/362 (21%) Query: 43 VVSVGRQK-VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 V VG + + Q+ ++ G ++++ ++L + + Sbjct: 114 VARVGENNVITDQEVVEGVYQQFRELAALDGHARSAKQKEMYN---QVLRKTIERELILD 170 Query: 102 F-------IEDIGL--EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 + + E + +F S + F + L +G+ Sbjct: 171 EMYTKLKKANKMAIIDEVKELATQSIDRQLRMFRKDTGAKSEEEFAAILRTQGLTVP--- 227 Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 + R + F+ S++L ++++R A Sbjct: 228 ------VIRRQMERQFMAEQYVSSVLKEKSRRTGL-----------------------AE 258 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 + +++++ D +R P+ ++ V Sbjct: 259 VRAYYDQHPDEFRRPDRVVWQHLFIAVRNYPNAQA------------------------- 293 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ--GKSLSDISLGSFSKEYIPDVSLADSIF 330 +A Q G +L+ + G + LG+ K + ++ Sbjct: 294 ------AYNQAAALAQQANSGADLAELSMKYDEGFAKQQKGLGAGEKRNEIQPADLEATV 347 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYK 389 + G + ++ GY + V + F + I +++ + + ++ Sbjct: 348 WSLQPGQVSGILQTPTGYHLVKVVERDMAGVQPFDAALQSKIRDKLTRAQMESEYQKLVD 407 Query: 390 RL 391 L Sbjct: 408 EL 409 >gi|254302830|ref|ZP_04970188.1| peptidylprolyl isomerase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323022|gb|EDK88272.1| peptidylprolyl isomerase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 563 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 73/483 (15%), Positives = 163/483 (33%), Gaps = 66/483 (13%) Query: 58 NSWKQELGMISQKIGFVVN-SERARSVGLDKKILDNLVSGATLDQFIEDI---GLEADHG 113 + ++ + +G + GL K L N + L Q + + Sbjct: 106 SEVNKQYEELESSMGDKEQFRRMLQVRGLTKDSLKNQIEENLLIQKTREEFSKNINPTDE 165 Query: 114 RVWG--EIARSPLFHGKD------NKFSHDVFVSRL--AREGINEKEYIDHYTKMLSRT- 162 + + P ++ ++ + F L AR+ + K+ Y +L +T Sbjct: 166 EINTYMALYSIPADKKEEAINLYKSEKGAEAFREALLKARKEMQIKDLAPEYENLLEKTA 225 Query: 163 -----------DVVGMFVGGMRPSNLLLDQAKRFYFE--NRSVDYIVLNNRHVPAIADPS 209 D+ M + + A++ E +R + + + + + Sbjct: 226 YEEEGFTITNLDLARSIANVMLGQKISKEDAEKQAKEMISRQIKMAKI-AKEKGVKVNEN 284 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 ++Q+ + Y + + ++++++DEL + +NK KY P Sbjct: 285 LDAISQFQD---------------YYIGLAEKVRDEVKLTDDELLKFFNENKSKYSIPAT 329 Query: 270 RTVEQLVF------PNQKEADEAFQSLKK---GKKFIQLAEEQG--KSLSDISLGSFSKE 318 + + + A E + L + F + + G + + LG+F + Sbjct: 330 ADAKLIFISVKSAKEDDDLAKEKAEKLLSELTPENFTEKGKSLGNNQDIIYQDLGTFGTK 389 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 + +++ + VI FGY +A+V + EV+ + Sbjct: 390 AMVK-EFEEALKDVPSNTIINKVIKTKFGYHVAYVKKNDNNQQW---EVEHILIVPYPSE 445 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438 K + E +++ + GT ++ +KI + D G G + Y + Sbjct: 446 KTVTEKLEKLNKIKADIEAGT----LALNDKIDEDVIQSFDAKGITPDGI-IPDFVYSPE 500 Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 + VF + L+K + + + Q + + A D ++ VK D+ K AE Sbjct: 501 IAKAVFSTE--LNKVGIINPNKATIVIFQKTKEVKAEDANFDKSKEQVKSDYINKKVAEY 558 Query: 499 VSS 501 +S Sbjct: 559 MSK 561 >gi|148655481|ref|YP_001275686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp. RS-1] gi|148567591|gb|ABQ89736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp. RS-1] Length = 337 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 11/176 (6%) Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEY--EKNKEKYFSPEIRTVEQLVFPNQKEA 283 +PE++ + + + +S ++++ E + ++ TV ++ + EA Sbjct: 130 SPEFRLFVTYFLARQKLGETL-VSENDIRQRITDEVMADTQRMVDVATVAHILVATEDEA 188 Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF---SKEYIPDVSLADSIFSLAKKGDFTP 340 + + L KG+ F LA+E + + G + ++F + G+ T Sbjct: 189 KQVIERLDKGEAFADLAKELSQDPGSANNGGVYENIQRGQFVPEFDKAMFEDLQPGETTK 248 Query: 341 -VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + FG+ + + + + + + + I ++ A E E E L Sbjct: 249 TPVQTQFGWHVIRLVSRGQAPALDPADAQAVIEQRV----AQELPFEQQTAFERLL 300 >gi|160902059|ref|YP_001567640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis SJ95] gi|160359703|gb|ABX31317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis SJ95] Length = 667 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 88/233 (37%), Gaps = 35/233 (15%) Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPS-------NAVLTQW-FEK----YKDNYRAP 227 +Q F+ + V Y + +P+ + + + +TQ+ F++ Y Sbjct: 105 NQVVDLLFDEKIVRYYAEQSDLLPSNEEVNNQINTQVDQYITQYKFDETNWNNMLQYYGS 164 Query: 228 EY-----------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVEQL 275 E + + L + K+ +S ++ A E+N E + E V+ + Sbjct: 165 EQNIRNILISGLQQTVETDLINNAVKDAVASVSREDALAYIEQNFESIKNDYEEVRVQHI 224 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIF 330 + ++ A+ + + G+ F A + + + +G K + S D++F Sbjct: 225 LLSDEATANSIKEMIATGEITFEDAASLYSLDTSNATNSGEIGWI-KHGNYEQSFEDAVF 283 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNI----KPSFTVSFQEVKKDIANQMRITK 379 + + G+ + S G+ + V + KP + +V ++ + ++ K Sbjct: 284 N-GQVGEIIGPVQTSEGFHLIRVLDKKIFEKPEDIFLYVDVYAEVESTVQGQK 335 >gi|308445916|ref|XP_003087049.1| hypothetical protein CRE_13891 [Caenorhabditis remanei] gi|308264485|gb|EFP08438.1| hypothetical protein CRE_13891 [Caenorhabditis remanei] Length = 438 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 50/401 (12%), Positives = 120/401 (29%), Gaps = 59/401 (14%) Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92 ++++ + VG + S + + + E L +++L Sbjct: 24 SVYAAPQDQIIAIVGSTAILKSDLDQGVAEATHRLQAQ-----KKEIPPQNILQQQVLSQ 78 Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR-EGINEKEY 151 L++ + ++ GL+AD + + + + + S + F +L + Sbjct: 79 LITHDAQLEQVKKYGLKADEKSLNEAVLKVAQ---QSGENSLEAFQKKLDAVAPGTYELL 135 Query: 152 IDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENRSV--DYIVL--------NNR 200 + + L + + ++ ++L ++ + +V VL Sbjct: 136 RNRVAEDLLIQRLSQQQVMSRIKITDLDVENFLKSPEGQAAVGSQVHVLHMRISGEAPAS 195 Query: 201 HVPAIADPSNAVLTQWFE--KYKDNYRA------------------PEYKRISYILFDVH 240 + +IA L + + + P + Sbjct: 196 ELESIAKAVRTDLKDSNDVKSIEKKFSTAQVKVDGADMGFRPLSDIPTDLAARVTTLEPG 255 Query: 241 EKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS 289 + I + L+ +K+ E+ ++ ++ D + Sbjct: 256 QTTDLIPAKDGVHVLKLLEKKSNEQKALVPQFNTRHILIKTSEVVSPENAKQTIDSIYNR 315 Query: 290 LKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 LK G F LA + G + SLG S + D + + + + Sbjct: 316 LKAGDDFATLASTYSNDPGSARDGGSLGWVSPGMMV--PEFDKLMQSSPVNEISKPFQTQ 373 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 FG+ I V+ + S E +K +A Q+ + E + Sbjct: 374 FGWHILQVTGTRQQDMTS--EYQKRMARQILGERQFESEYD 412 >gi|270290459|ref|ZP_06196684.1| foldase prsA [Pediococcus acidilactici 7_4] gi|304384659|ref|ZP_07367005.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM 20284] gi|270281240|gb|EFA27073.1| foldase prsA [Pediococcus acidilactici 7_4] gi|304328853|gb|EFL96073.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM 20284] Length = 300 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 26/175 (14%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 + V+ + + YKD Y A K+I + +IS+ + Sbjct: 71 KVTKKVVDKQYNAYKDQYGSSFKDILASNGMTEASLRKQIRSNALLKEAVKDNDKISSSD 130 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ E++ + K TV Q++ + A++ + L GK F +LA++ S + Sbjct: 131 LKKEWKSYQPK------VTVAQILVSKKSTAEDVIKQLNDGKDFAKLAKKYSTDSSSKNK 184 Query: 313 GSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 G + D D+ F L + T + +GY + + + KP+ Sbjct: 185 GGKIAPFDDTNTTLDSDFKDAAFKLDEGKYTTKPVKTQYGYQVIKMLD-KPAKGK 238 Score = 46.1 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 39/192 (20%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K+ L + + GS TV + K+ + +S K Sbjct: 6 KVLLGFASIAMAFT------LAACGSKTVATTSGGKITQDEYYSSLKDTSN--------- 50 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 K++L ++ L+ + G + V + + + Sbjct: 51 -----------GKQVLQEMIVNKVLE---KQYGDKVTKKVVDK---QYNAYKDQYGS--- 90 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 F LA G+ E S + + S+ L + + Y +V Sbjct: 91 -SFKDILASNGMTEASLRKQIR---SNALLKEAVKDNDKISSSDLKKEWKSYQPKVTVAQ 146 Query: 195 IVLNNRHVPAIA 206 I+++ + Sbjct: 147 ILVSKKSTAEDV 158 >gi|91794237|ref|YP_563888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella denitrificans OS217] gi|121956465|sp|Q12K61|SURA_SHEDO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|91716239|gb|ABE56165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella denitrificans OS217] Length = 434 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 39/332 (11%), Positives = 106/332 (31%), Gaps = 57/332 (17%) Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 L ++++ L+ Q E IGL+ ++ I KD K + +L Sbjct: 65 EQALRTQVIERLILTRLQLQMAERIGLQIGDLQLDQTIESI----AKDQKLTVSQLQQQL 120 Query: 142 AREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RSVDYIVLN 198 +G++ +Y + + ++ ++ ++ S + + E + V++ + Sbjct: 121 ENDGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISGLVKLMQEQGLKEVEF-QIG 179 Query: 199 NRHVPAIADPSNAVLTQWFE---------KYKDNYRAPE----------------YKRIS 233 + + ++PS+ L + +++R+ Y I+ Sbjct: 180 HILIDVPSEPSSEQLEASSKRANIVLKRLNEGEDFRSTAIASSSGPKALEGGIWDYMNIN 239 Query: 234 YILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRTVEQLVFP----- 278 + E ++ + + + + E ++ Sbjct: 240 EMPTLFAEVVNGAKVGDIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRHILLKPSPIL 299 Query: 279 NQKEADEAF-----QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIF 330 +++ A Q L F +LA + + + G PD A ++ Sbjct: 300 SEERAKAMLVNFQKQILSGEADFAELARQYSEDPGSAAKGGELGWSSPDVYVPEFAQTLN 359 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 SL K+ + + + G+ + + + + + Sbjct: 360 SL-KENEMSEPFRTTHGWHLTQLMDKRKTDAT 390 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 25/270 (9%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 S + + + + L L A+R + + + + + + L Q E Sbjct: 64 SEQALRTQVIERLILTRLQLQMAERIGLQIGDLQ-LDQTIESIAKDQKLTVSQLQQQLEN 122 Query: 220 YK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 YR + I+ + +++I++S E+ + +E+ + ++ Sbjct: 123 DGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISGLVKLMQEQGLKEVEFQIGHIL 182 Query: 277 F------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-V 323 + K A+ + L +G+ F A + G + I + Sbjct: 183 IDVPSEPSSEQLEASSKRANIVLKRLNEGEDFRSTAIASSSGPKALEGGIWDYMNINEMP 242 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRIT 378 +L + + AK GD I G+ I V + + T +EVK + + Sbjct: 243 TLFAEVVNGAKVGDIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRHILLKPSPILSEE 302 Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRRE 408 +A + K++ L+ E++R+ Sbjct: 303 RAKAMLVNFQKQI---LSGEADFAELARQY 329 >gi|297568757|ref|YP_003690101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio alkaliphilus AHT2] gi|296924672|gb|ADH85482.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 6/164 (3%) Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 L + KIE++++ LQ +N E++ V ++V ++A E L Sbjct: 111 SLLVEKKLSDKIELNDEVLQRYLHENAEEFTVKTAVQVSKIVVETPEKAREVQARLAASD 170 Query: 295 KFIQLAEEQG----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F +A++ + + LG ++ +P LA F++ ++G+ + I S G Sbjct: 171 DFAVVAQQFSRHEESAANGGDLGFVGRQALP-SDLAHHAFNVLRQGEISAPIVQSGGIYF 229 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 VS+ + F ++++ + Q+ ++ L+E Sbjct: 230 LKVSDYR-GDLPEFDKIRQLLTQQVAPHLRQNAFEQYLAELKEE 272 Score = 45.4 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 19/162 (11%) Query: 481 EVLTDVKKDWKTVKTAE---EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537 E+ +V + + E + + + +++V+E ++ + + + Q +R Sbjct: 123 ELNDEVLQRYLHENAEEFTVKTAVQVSKIVVETPEKAREVQARLAASDDFAVVAQQFSRH 182 Query: 538 DNEN-----------KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586 + + D F+ + PI KV++ + G + E Sbjct: 183 EESAANGGDLGFVGRQALPSDLAHHAFNVLRQGEISAPIVQSGGIYFLKVSDYR-GDLPE 241 Query: 587 KDKFISYLTQMMN----KDLLDSVIAYLKSQYSVTVHDNLIQ 624 DK LTQ + ++ + +A LK +Y + ++ ++ Sbjct: 242 FDKIRQLLTQQVAPHLRQNAFEQYLAELKEEYQIEINQEALR 283 >gi|116620016|ref|YP_822172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] gi|116223178|gb|ABJ81887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Solibacter usitatus Ellin6076] Length = 313 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 83/200 (41%), Gaps = 33/200 (16%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKE------KKIEISNDELQAEYEKNKEKYFS 266 LT+ E+ K + +P + I Y +V + + E+ Y+ NK+KY Sbjct: 83 LTKMAEQAKLDQESPYKEAIDYGRMNVLATAQITATVNAMTVEPAEIVKSYDSNKQKYTQ 142 Query: 267 PEIRTV---------------EQLVFPNQKEA--DEAFQSLKKGKKFIQLAEEQGKSLSD 309 +++ + ++ + + +A ++ +LK G F++L +E + Sbjct: 143 VKVKAIYVAFSDDAAASTTKGKKPLTEAEAKAKVEKLKAALKGGADFVKLVKENSDDETS 202 Query: 310 ISLGSFSK-----EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364 G + IPD + ++F+L KKGD + + G+ + + Sbjct: 203 REKGGDFATLRYTDNIPD-AFRAAVFAL-KKGDVSEPLKQPNGFYLLRAEEVT---VSPL 257 Query: 365 QEVKKDIANQMRITKASEKV 384 EV+ DI NQ++ +A++ + Sbjct: 258 SEVRDDIYNQLKNDRATQWL 277 >gi|288924571|ref|ZP_06418508.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella buccae D17] gi|288338358|gb|EFC76707.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella buccae D17] Length = 457 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 90/285 (31%), Gaps = 42/285 (14%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214 +++ + P + +Q + + ++D I ++ V + Sbjct: 49 EVMRLQGLAEGITFSGDPDCSIPEQIAVQKLFLHQAAIDSIEVSESEVAQGI---EGQIN 105 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVH----------------EKEKKIEISNDELQAEYE 258 W + + EY++ S + + +++S +++A + Sbjct: 106 SWIQMTGSREKLEEYRKQSITQMRQQMHDDYRNRLLIQKMRMKLVEDVKVSPAQVRAYFR 165 Query: 259 KNKEKY--FSPEIRTVEQLVFPNQKEADEA----------FQSLKKGKK-FIQLAEEQGK 305 F P VE L + +E + KG+ F LA + Sbjct: 166 DMPADSLPFVPTEVEVEILTSQPKISQEEINRVKDELRNYTDRVNKGETTFSTLARLYSE 225 Query: 306 SLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +G ++ + D + A+ F+L + ++ FGY I + + + Sbjct: 226 DPGTARMGGELDYTGRGMLDPAFANVAFNLTDPKKISKIVESEFGYHIIQLIDKRGDKIK 285 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISR 406 V+ + + ++A + + ++ A S + + Sbjct: 286 ----VRHILRKPVVSSEALDASIHRLDSIGDDIRAGKFSFEAAAS 326 >gi|225018196|ref|ZP_03707388.1| hypothetical protein CLOSTMETH_02133 [Clostridium methylpentosum DSM 5476] gi|224948993|gb|EEG30202.1| hypothetical protein CLOSTMETH_02133 [Clostridium methylpentosum DSM 5476] Length = 333 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317 E++ E V ++ ++ A EA + ++ G+ F L E + G Sbjct: 187 EQDITDTIHQEFIHVSHMLISDEATAQEALERVQAGEDFDSLVAEYSEDSGMGEEGYTFT 246 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 D+ ++L ++G+ + ++ ++GY I Sbjct: 247 YGEMVQEFEDAAYAL-QEGETSGLVQSTYGYHIIK 280 >gi|326562023|gb|EGE12353.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis 103P14B1] gi|326574518|gb|EGE24460.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis 101P30B1] gi|326576358|gb|EGE26267.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis O35E] Length = 434 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 ++ S V V + + S + + + QK G V ++A+++ L Sbjct: 23 QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149 D L++ I G+ + + ++ + G + S F S+L E + Sbjct: 77 DELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYA 133 Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197 + + + + +R ++ +D R V Y +L Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193 Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 V S + + Y + + + I+ Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253 Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281 K + ++ ++ K ++ ++ ++ Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + +Q L++G F LA SLG ++ + + + AK GD Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 F+ FG+ I V++IK + DI Q R A E Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406 >gi|303239171|ref|ZP_07325700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio cellulolyticus CD2] gi|302593216|gb|EFL62935.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio cellulolyticus CD2] Length = 353 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 23/169 (13%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV--------------EQLVFPNQKEAD 284 + KIEI++ ++++E+EKNKE+Y ++ V E V +K AD Sbjct: 175 ASSQPAKIEINDSDVKSEFEKNKEQYNKVTVKHVLVLTNDSTTNEPLPEDKVAEKKKLAD 234 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPV 341 + + + G+ F L ++ + G +F K + D F+ AK+GD V Sbjct: 235 DILKKAQAGEDFEALVKQYSEDPGSKDKGGEYTFPKGEMVK-EFEDWAFN-AKEGDM-GV 291 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + ++G+ + + + SF K + + ++ + +K+ E K Sbjct: 292 VQTTYGFHVMKFIKREDA---SFDAEKDKLKSSLQNAQYQKKLDELKKA 337 >gi|300728336|ref|ZP_07061701.1| ppic-type ppiase domain protein [Prevotella bryantii B14] gi|299774401|gb|EFI71028.1| ppic-type ppiase domain protein [Prevotella bryantii B14] Length = 476 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 67/431 (15%), Positives = 140/431 (32%), Gaps = 50/431 (11%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI-RT 271 + + + D + + + SY V E YE +++ + Sbjct: 70 VKAAEDAHLDTLTSFQKEFESYRDQQVRPSFITEAEVEAEAHKIYESERQRIDNNGGMIR 129 Query: 272 VEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSF 315 ++ ++ A D + +LKKG F +LA+ ++G ++ L Sbjct: 130 PSHILLLLKQNAPAKAAEIVKNRIDSIYNALKKGANFQELAKKYSDDKGSAVQGGLLPWI 189 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 K D +S+ KKG+ + GY I +++ S+ +K +I + Sbjct: 190 VKGQTYK-EFEDVAYSM-KKGEMSKPFSSPAGYHIILMTD--KGKFFSYDSLKNNIYRFI 245 Query: 376 RITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 E++ + + + L G + + + + + Sbjct: 246 EQRGIREQIIDRNLDSIVKTLPEGATRETVLDERASDMSEKDSNLKYLIQEYHDGLLLYE 305 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 + ++ KD+ +++ SY W +E Sbjct: 306 ISNRKIWEKAAKDEVGLENYFKR-HKKSYAW--------------DEPRFKGIAY----- 345 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 V A+ ++ S +GK F++ L + + I R+ E F G + V Sbjct: 346 ---HVKDAADVSAVKKSVKGKPFQEWASILRKTFNNDSTI-RIRVEKGIF-KKGDNAVVD 400 Query: 555 GPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 V V I+ Y + + K GP +D S + +L I L+ Sbjct: 401 KMVFHVDTAQIKQIKDYPIDAIFGKKLKKGPETYED-VKSKVISDYQDELEKVWIEALRK 459 Query: 613 QYSVTVHDNLI 623 +Y V V+ +++ Sbjct: 460 KYPVEVYQDIL 470 >gi|284055341|pdb|2KGJ|A Chain A, Solution Structure Of Parvulin Domain Of Ppid From E.Coli Length = 102 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%) Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYI 320 P+ + + EA L KG F LA+E+ + + +G I Sbjct: 1 TQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATI 60 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 PD L +KG + VI S G++I + +I+ + Sbjct: 61 PD---ELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQAA 96 >gi|171463167|ref|YP_001797280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192705|gb|ACB43666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 270 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEADEAFQSLKKG 293 ++ K I++ ++QAEY K V + + +A A +KKG Sbjct: 106 LEMSTYMSKNPITDADVQAEYNKEIASLSPQGMIVEYKVSDIAVATEADAQAALARIKKG 165 Query: 294 KKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVI 350 + F ++A+ + + + G+ + LA ++ +L+K G +P I G+ + Sbjct: 166 EAFDKVAKSVSLAPNKVQGGAVGWIQPGQVAPQLASTLTTLSK-GQVSPAPIQMQQGWYL 224 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + + K S SF++ K+ I + K E + + K + Sbjct: 225 IKLEDKKSSKLPSFEQAKQAIRTGLTQRKQFEFLGQIAKDAK 266 >gi|254671556|emb|CBA09191.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha153] Length = 366 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + ++ + + ++ S A + Sbjct: 99 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 158 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 K +P +R I + +S E+ A E+ K+ Sbjct: 159 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 218 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 219 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 278 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ +L K G + FG+ I ++ ++ + T + ++ Sbjct: 279 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 335 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 336 SVRQYIFQQKAEQATVNLLRDL 357 >gi|121634150|ref|YP_974395.1| putative rotamase [Neisseria meningitidis FAM18] gi|120865856|emb|CAM09589.1| putative rotamase [Neisseria meningitidis FAM18] Length = 405 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + ++ + + ++ S A + Sbjct: 138 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 197 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 K +P +R I + +S E+ A E+ K+ Sbjct: 198 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 257 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 258 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 317 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ +L K G + FG+ I ++ ++ + T + ++ Sbjct: 318 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 374 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 375 SVRQYIFQQKAEQATVNLLRDL 396 >gi|128297|sp|P23119|NIFM_AZOCH RecName: Full=Protein nifM gi|142394|gb|AAA22166.1| nifM [Azotobacter chroococcum] Length = 293 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 100/269 (37%), Gaps = 46/269 (17%) Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE------ 228 S L QA+R + ++ VL + P+ + + + + + + Y + E Sbjct: 31 SEEQLQQAERIIGRQKHIEDAVLRCPDAAGVVIPA-SQIEEAWTQIANRYESAEALQQAL 89 Query: 229 ---------YKRISYILFDVHEKEKKI-----EISNDELQAEYEKNKEKYFSPEIRTVEQ 274 + + V I EIS+ ++ Y + E++ P Sbjct: 90 DAQGLERVGMRAMLARELKVQAVLDCICAGLPEISDTDVSLYYFNHAEQFKVPARHKARH 149 Query: 275 LVF--------PNQKEA----DEAFQSLK-KGKKFIQLAEEQG---KSLSDISLGSFSKE 318 ++ ++ A + + L+ K ++F + A + ++ LG Sbjct: 150 ILVTINEDFPENTREAARTRIEAILKRLRGKPERFAEQAAKHSECPTAMQGGLLGEVVPG 209 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN--QMR 376 + L +F +A+ G +PV+ G+ + ++ + ++ +E+ + + Q+R Sbjct: 210 TLY-PELDACLFQMAQ-GQLSPVLESPIGFHVLFCESVSTARQLTLEEILPRLRDRLQLR 267 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEIS 405 KA ++ K LE L +++ ++ Sbjct: 268 QRKAYQR-----KWLESLLQQNATLENLA 291 >gi|293393860|ref|ZP_06638167.1| peptidyl-prolyl cis-trans isomerase C [Serratia odorifera DSM 4582] gi|291423687|gb|EFE96909.1| peptidyl-prolyl cis-trans isomerase C [Serratia odorifera DSM 4582] Length = 93 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ N+K A+E LK+G F LA + S SLG F+K + + ++F Sbjct: 9 HILVDNEKLANELLAKLKRGVSFDTLARKYSTCPSKRNGGSLGEFNKGTMV-AAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SIPLLKP---YGPVKTQFGYHIIKV 89 >gi|290508670|ref|ZP_06548041.1| nitrogen fixation protein NifM [Klebsiella sp. 1_1_55] gi|289778064|gb|EFD86061.1| nitrogen fixation protein NifM [Klebsiella sp. 1_1_55] Length = 266 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 21/220 (9%) Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEYKR 231 + A + + + + +PA A L W ++ + E Sbjct: 26 AVDRQAFEAAWQRQAQMEQLIVAQIAPEAIPAALLEGLATSLGAWLDE--GGFTPAERAA 83 Query: 232 ISYILFDVHEKEKKIE-----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 I + I +QA Y +++ ++ PE R L+ + Sbjct: 84 IVLHHARLETAFAGIASQAPRPDPATVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQAV 143 Query: 287 FQSL--------KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + + + F LA+ +L LG + + L +++F+LA+ Sbjct: 144 YSRIRELHGQIEASREAFAPLAQRHSHCPSALDGGRLGWIGRGLLY-PQLEEALFALAEN 202 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + G+ + I+P+ ++ ++ + + + Sbjct: 203 -ALSAPVASELGWHLVWCEAIRPAAPMTPEQALESARDYL 241 >gi|46579881|ref|YP_010689.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio vulgaris str. Hildenborough] gi|120602653|ref|YP_967053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|46449297|gb|AAS95948.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio vulgaris str. Hildenborough] gi|120562882|gb|ABM28626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris DP4] gi|311234118|gb|ADP86972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris RCH1] Length = 94 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 ++ P ++ +E ++ G+ F ++A + S LG F + + + Sbjct: 5 RARHILVPTEEACNELKTRIEGGEDFAEVARASSRCPSGKRGGDLGEFPRGAMV-PEFDE 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++F+ + G I FGY + V++ Sbjct: 64 AVFT-GEVGKVLGPIRTQFGYHLVEVTSR 91 >gi|325852084|ref|ZP_08171167.1| hypothetical protein HMPREF9303_2299 [Prevotella denticola CRIS 18C-A] gi|325484640|gb|EGC87556.1| hypothetical protein HMPREF9303_2299 [Prevotella denticola CRIS 18C-A] Length = 715 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 79/636 (12%), Positives = 195/636 (30%), Gaps = 73/636 (11%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG-----SSTVVSVGRQKVPFSSF 56 L IR S+ + + + FL + S +G + + +K+ + Sbjct: 4 LGKIR--SKGGMLVAAIGLALFAFL---AEEGFRSCNGIKGEARQQIGEILGEKISVQDY 58 Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + I + E + ++ LVS L E +GL + Sbjct: 59 QKLIDEYQSAIKFTMQRDNLTEEELNQ--VKDQVWQQLVSNRVLQADAEKVGLTVTEQEI 116 Query: 116 WG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 +A++P + + +F + L G N+ + Sbjct: 117 QNVLNDGTNLMLAQTPFVNQQTGRFDVNALKQFLD--GYNKAKSEKS-----------PQ 163 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + L K + Y L V + + + +++ Sbjct: 164 LDQMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKA---EAKMAFKDNNEES---- 216 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP-EIRTVE----QLVFPNQ-- 280 +++ + + + I+I++++L+A+Y++ K + E R ++ Q+ Sbjct: 217 -QIQLASLAYSSVKDAD-IKITDEDLKAKYDELKPAFRQNVETRDIKFVDYQIKASTADR 274 Query: 281 ----KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 KE + + L + + G + + + SK Y +A I SLA Sbjct: 275 NAVVKEMNGLQKQLATAADPATVVSKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGT 334 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 I V + + ++ + +++ LA Sbjct: 335 TGVTENKQDNTLNIIRVLS--KAQLPD----SVQFRQIQVAANTPDEARAKADSIQKALA 388 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456 G + +++R + + Y LL ++ + Sbjct: 389 GGADFEALAKRYGQTGEKVWFTGQQYEAAPSMSQDNRTYINALLS------GEVNATQNI 442 Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516 AL G+ + +Q+ + + V+ + K T E ++ ++ V + + + Sbjct: 443 ALAQGN-VILQVLDKKAMTTKTTAAVIKKLIDFSKA--TRNEAYNRFSEFVAK-NTTTTD 498 Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVF 574 G + + N I+ ++ D + +F V +++ Sbjct: 499 LEKNASKYGYRVQSLNDISTAEHYVAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLV 558 Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610 V N+ + P + + + +++ ++++ A L Sbjct: 559 IVLNA-IHPQGFRAWDDAQVKEILKREVMKDKKAEL 593 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 60/379 (15%), Positives = 121/379 (31%), Gaps = 48/379 (12%) Query: 262 EKYFSPEIRTVEQLVFPN------QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 K P+ Q+ + +AD ++L G F LA+ G++ F Sbjct: 353 SKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT---GEKVWF 409 Query: 316 SKEYIPDVSLADSIFSLAKK----------GDFTPVIHGSF--GYVIAHVSNIKPSFTVS 363 + + ++ S+++ G+ + + G VI V + K T + Sbjct: 410 TGQQY------EAAPSMSQDNRTYINALLSGEVNATQNIALAQGNVILQVLDKKAMTTKT 463 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 V I + +KA+ E Y R EF+A T+ ++ + + ++ Sbjct: 464 TAAV---IKKLIDFSKATR--NEAYNRFSEFVAKNTTTTDLEKNASKYGYRVQSLNDIST 518 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483 VA I L +F + + + + P R ++ Sbjct: 519 AEHY--VAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLVIVLNAIHPQGFRAWDD-- 574 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD----N 539 VK+ K E + K +L++ K G + + GA + NQI Sbjct: 575 AQVKEILKR----EVMKDKKAELLIAKLK-GVSSIAAAQAKGAKVSMVNQITFASPAFVQ 629 Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQM 597 V + P++ VF+V + G + + Q Sbjct: 630 ATGAVEPALSGAVAATAAGKFSKAPVKGNAGVYVFQVVKKAMRAGSKYNELMVMQQTAQQ 689 Query: 598 MNKDLLDSVIAYLKSQYSV 616 + ++ + + L + +V Sbjct: 690 NMQ-MVGNFMQDLILKANV 707 >gi|304410420|ref|ZP_07392038.1| SurA domain protein [Shewanella baltica OS183] gi|307304512|ref|ZP_07584262.1| SurA domain protein [Shewanella baltica BA175] gi|304350904|gb|EFM15304.1| SurA domain protein [Shewanella baltica OS183] gi|306911914|gb|EFN42338.1| SurA domain protein [Shewanella baltica BA175] Length = 434 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 115/371 (30%), Gaps = 71/371 (19%) Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 N L ++++ L+ Q + IGL ++ I K S Sbjct: 59 NQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVA 114 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 ++ EG++ +Y + L +G + +R + R Sbjct: 115 QMQQKIESEGLSFSQY----REQLREEITLG--------------EIQRIQVQRR----- 151 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 S +T + ++ +I +IL DV + Sbjct: 152 ----------IQVSPQEITSLVKLIQEQGMKDVEYKIGHILIDVPNNPTSEQ-------- 193 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + + K A+ + LK G+ F + A + G + Sbjct: 194 --------------------LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIW 233 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IAN 373 I + +L + + AK GD I G+ I + + + T +EV+ I Sbjct: 234 DYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILL 293 Query: 374 QMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + + ++ K ++ L++ + ++++R+ S D G+ + Sbjct: 294 KPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIY 350 Query: 433 IPYKEQLLFRV 443 +P Q L + Sbjct: 351 VPEFAQTLNSL 361 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 268 EIRTVEQLVFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS--- 314 E ++ ++ A + ++ G+ KF LA + + + G Sbjct: 284 EEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELG 343 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 +++ I A ++ SL K + + G+ I + + + Sbjct: 344 WAEPSIYVPEFAQTLNSL-KTDQISEPFRTTHGWHITQLEERRKTDATD 391 >gi|258649127|ref|ZP_05736596.1| peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC 51259] gi|260850781|gb|EEX70650.1| peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC 51259] Length = 739 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 62/509 (12%), Positives = 137/509 (26%), Gaps = 86/509 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59 L+ IR S+ + I + + F+ G + + V + + F N Sbjct: 4 LQKIR--SKGKILMIIIGLGLFAFIAESGFQSITGLTNADKQKVGEAFGETLTIQDFQNR 61 Query: 60 WKQELG---MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 +Q M Q+ G + +++ + V+ + + + G++ V Sbjct: 62 VEQLSNIAKMQKQRAGQSDALTDQEQDQIREQVWSDFVNTSAIKHETDKAGIQVTDEDVQ 121 Query: 117 GEI-----------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID------------ 153 + A+ + + +F + L N + Sbjct: 122 DALRTGQAQSLQMMAQMGFANQQTGRFDVNALQDFLKNYDKNMAQLAQSGQQAYMEQYQM 181 Query: 154 ----------HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 L + M + + V+ + V Sbjct: 182 LRQIWEYTEGQLRNELLKMKFYTMLGQTFISNPISAKMDFDARNTLADVEVAAVPYTMVS 241 Query: 204 AI-ADPSNAVLTQWFEKYKDNYRAP-EYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261 ++ L +E+YK+ + P + + + V K +L Sbjct: 242 DKDVKVTDEDLKAAYEQYKEQFVNPTKSVDLKVLDVTVEASAK----DKADLT------- 290 Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 KE +E Q L+ G + +L + Sbjct: 291 -------------------KEVNEVRQKLEAGGDPAAVVNASKTIFPYTTLAMSKNAFSS 331 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 +A ++ S+ G PV + + I + I V+ + + K Sbjct: 332 TPDIAAALDSMG-VGSVKPVYYNAQDNTINTLKLINKLQAA--DSVRYRMIAAV--GKTP 386 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 ++ + + + L G D++++R D E +P + + Sbjct: 387 QESQTRADSILKALQGGAKFDDLAKRYN------QPTDSIWMFSAQYEAPNVPDDQAKMI 440 Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKE 470 L ++V + VQI E Sbjct: 441 NQINT---LQPGYSVISNAQGSIVVQILE 466 >gi|87310456|ref|ZP_01092586.1| hypothetical protein DSM3645_30196 [Blastopirellula marina DSM 3645] gi|87286955|gb|EAQ78859.1| hypothetical protein DSM3645_30196 [Blastopirellula marina DSM 3645] Length = 838 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 76/575 (13%), Positives = 152/575 (26%), Gaps = 94/575 (16%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-----SVSGSSTVVSVGRQKVPFSSF 56 RK + +A +F V+L + F + G+ F + VV + Q + Sbjct: 8 FHFFRKNQKALLA-VFGVLLMIVFTVGGVVSQFFPQRAAYEAADKVVVKIDGQPLTKPEI 66 Query: 57 INSWKQ---------ELGMISQKIGFVVNSERARSVGLDKK----------------ILD 91 + +Q+ G N GL + Sbjct: 67 DRLSQDATLVSLVTGMAMARTQEAGGFPNPPAPPIAGLRYQPPSGPNSPGGAMREEISTQ 126 Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-----GI 146 ++S E +G+ V + S + L + + Sbjct: 127 VVISDHLFSLEGERLGVAISDDMVREFMTSV-----TGGVISDVQYAELLNQAQGADGRV 181 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVLNNRHVPA 204 + + + + L + + G+ + + NR V +N A Sbjct: 182 TYDQMFEMFRRTLLVQKTKRLLLEGIS-TATPASAWINYRNLNRTLDVQLYPVNTADYLA 240 Query: 205 IA--DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK------------EKKIEISN 250 P+ A L + F +Y+D R P ++ D + +I++ Sbjct: 241 KVTKKPTEAELKKLFNQYRDQIRNPLTGEPGFLQLDKAAVGFVKADYEKFLEAELAKITD 300 Query: 251 DELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-------KFIQLAEE 302 +++ A+YEKNK+ Y P + + + ++ E Sbjct: 301 EQVAADYEKNKDSSYRKPVADPAAETPLGVPATEPAMEEQPAATEPMTTEPMTTEPMSTE 360 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 K+ + K + + + + KP+ Sbjct: 361 PMKTEPAAEKPAEDKPAAEPAKMEEPAKEAPAEEK----TMTETPPATEKSAEEKPAPEA 416 Query: 363 SFQE----VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418 +E K + + SE + ++ E A +E EK P Sbjct: 417 PAEEKPADEKPAAEESSLLGRGSEVMLVAFQEEGEKPAEDKPSEEKPATEKPADDAAPAA 476 Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478 + +K P +E + + P + P R Sbjct: 477 E----PMKETPAETKPMEE--MSAPMDETKPTDESPMEEA--------------PVEYRP 516 Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513 LEEV +K V ++ +E Sbjct: 517 LEEVKDQIKASLARPLAQAAVKDALQKVSDVLQRE 551 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 40/310 (12%), Positives = 100/310 (32%), Gaps = 54/310 (17%) Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL-----------------AL 397 P +EVK I + A VK+ +++ + L Sbjct: 508 EEAPVEYRPLEEVKDQIKASLARPLAQAAVKDALQKVSDVLQREYDDYFYADEQNGNPFD 567 Query: 398 GTSMDEISRREKIVSIDLPLVDF-AGKDVKGKEVAAIPYK------------EQLLFRVF 444 + ++++ + ++P++D+ A + E+ + + + +F Sbjct: 568 DLDLKKLAQEHGVEYGEMPMMDYIAAMESPYGEITHAEFSYNPQQGGLQRNDRRFVDFIF 627 Query: 445 GKDDPL---------SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495 G PL S ++P + ++V V + WK + Sbjct: 628 GNKSPLYRPQEFPGASSSSMFSMPADQQFVFWKTDESKGFLPTFDQVRDQVVEAWKLQQA 687 Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN----QINRMDNENKFFGYDGIS- 550 A+ ++ + + ++ ++ A L+ N Q R + G+ Sbjct: 688 AKLAEAE-AEKIAASAQGDAPLNEVVPVKDAVLVADNITYYQEIRQPGQYNPAQIPGVEK 746 Query: 551 -------QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603 ++F+ PV P + + V +VT + + +D+ + + + Sbjct: 747 TGLKTLDKIFATPVGATVVAPNADETVWYVARVTGERKTEAELRDQLKAEMNGDFPFSV- 805 Query: 604 DSVIAYLKSQ 613 + + ++SQ Sbjct: 806 -AYLEGMRSQ 814 >gi|326560318|gb|EGE10706.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis 7169] gi|326566363|gb|EGE16513.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis BC1] Length = 434 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 ++ S V V + + S + + + QK G V ++A+++ L Sbjct: 23 QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149 D L++ I G+ + + ++ + G + S F S+L E + Sbjct: 77 DELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYV 133 Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197 + + + + +R ++ +D R V Y +L Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193 Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 V S + + Y + + + I+ Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253 Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281 K + ++ ++ K ++ ++ ++ Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + +Q L++G F LA SLG ++ + + + AK GD Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 F+ FG+ I V++IK + DI Q R A E Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406 >gi|293603514|ref|ZP_06685936.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292818100|gb|EFF77159.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 37/318 (11%), Positives = 82/318 (25%), Gaps = 45/318 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + ++ + + + G V ++ L ++L L+ Sbjct: 61 DGIAAVVDKDVITLRELRDASVRISSELKSR-GIQVPDDQ----TLQHQVLQRLIMERVQ 115 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +G+ D +V I NK S + + + G Y + + Sbjct: 116 RHEADRLGIRVDDAQVDQAIQTIAA----RNKISVAQLRAEIEKSGAGWDAYRKSLREEI 171 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + S+ +D + R+ + + Sbjct: 172 RTDRLRQRAVDSNIVISDTEVDAF--LKDQRRNPAFGAAPQAQPEPQPQAQPQPAPE--- 226 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + + SPE + Sbjct: 227 ----------QAAAPSGPMLYALAQILVRVPEG-------------SSPEQ------LAA 257 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGD 337 +K+A++ K+G F LA + G + L S +KG Sbjct: 258 LRKKAEDVLARAKRGDDFASLAAASSDGPEALQGGVMGVRPLDGWPDLFVKAISNLQKGQ 317 Query: 338 FTPVIHGSFGYVIAHVSN 355 + +I G+ I V + Sbjct: 318 VSGLIQSGNGFHIIKVMD 335 >gi|238755780|ref|ZP_04617112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia ruckeri ATCC 29473] gi|238706007|gb|EEP98392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia ruckeri ATCC 29473] Length = 93 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 9 HILVDDEKQANDILAQLNNGANFQELAKKHSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 68 SCELLQP---YGPVKTQFGYHIIKV 89 >gi|262375382|ref|ZP_06068615.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145] gi|262309636|gb|EEY90766.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145] Length = 440 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 50/397 (12%), Positives = 112/397 (28%), Gaps = 65/397 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + + ++ V L+++ L+ L+ Sbjct: 38 DEVVAVVDNSIILRSDLAQGVAEISHQLQKQKKAVPP-----QQYLEQQALEQLIIRQAQ 92 Query: 100 DQFIEDIGLEADHGRVWGEIA---------RSPLFHGKDNKFSHDVFVSRLAREGINEKE 150 + ++ + D + + F K + + + + S R I E Sbjct: 93 LEQVKRYNIRPDEKALNEAVLKVARDSGSPSLEAFQQKLDAMAPNTYASL--RNRIAEDL 150 Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210 ++ + + + + + L Q + V ++ ++ + IA Sbjct: 151 ALNRLRQQIVTSRI--QITDQDVKNFLNTPQGQALLGSQVHVLHLRVSGENAEQIATQVK 208 Query: 211 AVLTQW--FEKYKDNYRA------------------PEYKRISYILFDVHEKEKKIEISN 250 L + Y P + + I +++ Sbjct: 209 QELNSSNDIQAIGKKYSTGGVKVEAADMGVRNLSEIPAELAARVTTLQPGQTSELIPVAD 268 Query: 251 --DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKFIQL 299 L+ K E+ ++ ++ D + LK+G+ F L Sbjct: 269 GVHVLKLLERKGGEQKALVPQYLTRHILIQPSEVVSPENAKQMIDSLYNRLKQGEDFTVL 328 Query: 300 AE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A + G + SLG S + + S G F+ FG+ I VS Sbjct: 329 ASTFSNDTGSARDGGSLGWVSPGVMV-PEFEQQMKS-TPVGQFSKPFQSQFGWHILQVSE 386 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 + ++D+ + + A + + E E Sbjct: 387 TR----------QQDMTQEYQERMARQLLSERQFDAE 413 >gi|114564239|ref|YP_751753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella frigidimarina NCIMB 400] gi|121956468|sp|Q07YK0|SURA_SHEFN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|114335532|gb|ABI72914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella frigidimarina NCIMB 400] Length = 434 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 46/400 (11%), Positives = 122/400 (30%), Gaps = 67/400 (16%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 KI +L + ++ + V + + S N Sbjct: 6 KIIFALLALAMSNTSMAAPM---PLDRVSVQINDGIILESEITNMVSTVKANAKA-ANQT 61 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 + S+ A L ++++ L+ Q E IGL+ ++ I K+ K + Sbjct: 62 LPSDDA----LRTQVIERLILTHLQMQMAERIGLQIGDLQLDQTIENI----AKEQKVTV 113 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN--RS 191 + EG + +Y + + ++ ++ ++ S + + E + Sbjct: 114 AQMQQTIESEGTSFSQYREQLRQEVTLGEIQRIQVQRRIQVSPQEISGLVKLIQEQGLKD 173 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYRAPEYKRIS--------- 233 V++ + + + ++P++ L D++R+ S Sbjct: 174 VEF-QIGHILIEVPSNPTSEQLEGASRRAEIVLKRLNNGDDFRSTAIASSSGPKALEGGI 232 Query: 234 --YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLV 276 ++ + ISN + + + + E ++ Sbjct: 233 WDFMNINEMPTLFAEVISNAKKGDIIGPIKSGSGFHIIKVVDTRGLQTQEVEEVKSRHIL 292 Query: 277 FP-----NQKEADEAFQ----SLKKG-KKFIQLA----EEQGKSLSDISLGSFSKEYIPD 322 ++ A ++ G F +LA E+ G + LG + + Sbjct: 293 LKPSPILSEDRAKAMLANFLAQVRAGDADFAKLATQYSEDPGSAAKGGELGW-ADPSMYV 351 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 ++ SL ++G ++ + G+ + + + + + Sbjct: 352 PEFTQTLASL-QEGQYSEPFRTTHGWHVVQLESRRKTDAT 390 Score = 60.4 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 28/301 (9%) Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK-- 221 + + + ++L + A+R + + + ++ + A + Q E Sbjct: 68 LRTQVIERLILTHLQMQMAERIGLQIGDLQ-LDQTIENIAKEQKVTVAQMQQTIESEGTS 126 Query: 222 -DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 YR + ++ + +++I++S E+ + +E+ + ++ Sbjct: 127 FSQYREQLRQEVTLGEIQRIQVQRRIQVSPQEISGLVKLIQEQGLKDVEFQIGHILIEVP 186 Query: 281 ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLAD 327 + A+ + L G F A + G + I + +L Sbjct: 187 SNPTSEQLEGASRRAEIVLKRLNNGDDFRSTAIASSSGPKALEGGIWDFMNINEMPTLFA 246 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-----DIANQMRITKASE 382 + S AKKGD I G+ I V + + T +EVK + + +A Sbjct: 247 EVISNAKKGDIIGPIKSGSGFHIIKVVDTRGLQTQEVEEVKSRHILLKPSPILSEDRAKA 306 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + L + A +++ + S D G+ +P Q L Sbjct: 307 MLANF---LAQVRAGDADFAKLATQY---SEDPGSAAKGGELGWADPSMYVPEFTQTLAS 360 Query: 443 V 443 + Sbjct: 361 L 361 >gi|315644371|ref|ZP_07897511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] gi|315280248|gb|EFU43540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex V453] Length = 361 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 102/283 (36%), Gaps = 39/283 (13%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 I EKE+ + + F+ L Q + + Y +++ A Sbjct: 52 ITEKEFDLEQRMIQFMSPEYAQFLQMDEFKEYLAKQGVAYEYL-----YAKADDKAKEAA 106 Query: 206 ADPSNAVLTQWFEKY---KDNYRA-------PEYKRISYILFDVHEKE-KKIEISNDELQ 254 ++ +L Q +K +D ++A E +Y+L + E +K ++S ++++ Sbjct: 107 EKQADDLLKQ--QKNGMGEDQFKAALETQKLTEQDLKNYMLRVLTVMEHEKNQVSEEDIK 164 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKE-------------ADEAFQSLKKGKKFIQLAE 301 +++ NK+ Y + +V ++ + A E L KG+ F +A+ Sbjct: 165 KDFDANKKDYTN---ISVRHVLVSFKDAEGKDRPEGEALKIAKEVENKLNKGEDFAAVAK 221 Query: 302 EQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 E + + G + + +L + + + +GY + V + Sbjct: 222 EYSQDPASKDKGGLIENKPAGSWVPQFKEKALTL-ELNKISAPVETDYGYHVMKVEKREE 280 Query: 359 SFTVSF-QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 + K+ I N++ K ++ + L E + L S Sbjct: 281 VAYDKLPADQKEGILNELASAKIDNFMQNELNDLIESMDLPKS 323 >gi|254509382|ref|ZP_05121467.1| chaperone SurA [Vibrio parahaemolyticus 16] gi|219547690|gb|EED24730.1| chaperone SurA [Vibrio parahaemolyticus 16] Length = 431 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 83/337 (24%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +++ + L+ Q E IG+ D R+ I K+N + + Sbjct: 64 EQEVLRQQVTEKLIIDTLQQQEAERIGVRIDDNRLNQAIEEI----AKNNNQTIEQLSDS 119 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200 +A EG+ E+ + K ++ T+ V R ++ + Sbjct: 120 IAAEGLEYSEFREQVRKEIAATEARNALV-------------------RRRINILPAEVD 160 Query: 201 HVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 ++ I A +NA + +IS+I V++ + + Sbjct: 161 NLANILAQETNATVQ---------------YKISHIQLRVNDGDDASALEKQ-------- 197 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFS 316 A + LK+G F +A K+L G Sbjct: 198 -----------------------AKDIVAKLKEGADFATMAYTYSKGPKALQGGDWGWMR 234 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IAN 373 KE +P AD+I +L KG G+ I + ++K TV+ EV I Sbjct: 235 KEEMP-TIFADNI-NLENKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIRP 292 Query: 374 Q--MRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + +++ E +R++ A + E++R+ Sbjct: 293 TVILSDEGVQKELNEIIERIQ---AGEATFGELARQY 326 >gi|238784761|ref|ZP_04628764.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia bercovieri ATCC 43970] gi|238714357|gb|EEQ06366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia bercovieri ATCC 43970] Length = 93 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 9 HILVDDEKQANDILAQLNNGADFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 68 SCELLQP---YGPVKTQFGYHIIKV 89 >gi|167849967|ref|ZP_02475475.1| putative rotamase [Burkholderia pseudomallei B7210] Length = 156 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 6/154 (3%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 + + D++ A Y + K K + E + L P + +A L +G F +LA Sbjct: 2 TFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGELA 60 Query: 301 EEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + + Sbjct: 61 MRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDKR 118 Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 S ++++ + R+ K + E + Sbjct: 119 DIVAPSLDQIREQLIELARVDKFERHLCELRGAV 152 >gi|288934468|ref|YP_003438527.1| nitrogen fixation protein NifM [Klebsiella variicola At-22] gi|255761121|gb|ACU32721.1| nitrogen fixation protein NifM [Klebsiella variicola At-22] Length = 266 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 21/220 (9%) Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV-LTQWFEKYKDNYRAPEYKR 231 + A + + + + +PA A L W ++ + E Sbjct: 26 AVDRQAFETAWQRQAQMEQLIVAQIAPEAIPAALREGLATSLGAWLDE--GGFTPAERAA 83 Query: 232 ISYILFDVHEKEKKIE-----ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 I + I +QA Y +++ ++ PE R L+ + Sbjct: 84 IVLHHARLETAFAGIASQAPRPDPAAVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQTV 143 Query: 287 FQSL--------KKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + + + F LA+ +L LG + + L +++F+LA+ Sbjct: 144 YSRIRELHGQIEASREAFAPLAQRHSHCPSALDGGLLGWIGRGLLY-PQLEEALFALAEN 202 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 + + G+ + I+P+ ++ ++ + + + Sbjct: 203 -ALSAPVASELGWHLIWCEAIRPAAPMTPEQALESARDYL 241 >gi|58583369|ref|YP_202385.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188575375|ref|YP_001912304.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae PXO99A] gi|75508083|sp|Q5GWC1|SURA_XANOR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|58427963|gb|AAW77000.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188519827|gb|ACD57772.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 463 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 45/431 (10%), Positives = 112/431 (25%), Gaps = 70/431 (16%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 + +L + I L+ A S V V S + + + + + Sbjct: 8 VLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAGRENQLP 67 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + L +++L+ L+ + G+ + IA + N + D Sbjct: 68 PDDV-----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASI----AQQNGTTVD 118 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 +LA +G+ ++ + + R S + + + Sbjct: 119 GLRQKLAADGMGYADFRASVRDEIIV-QRLRQSFAQSRISVSEGEVDTALTQQAATGSKY 177 Query: 196 VLNNRHVPAIADPSNAVL----------TQWFEKYKDNYRAPEYK-----------RISY 234 L + + + + +K + ++ A + + + Sbjct: 178 HLAHILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGW 237 Query: 235 ILFDVHEKEKKIEISND---------------------ELQAEYEKNKEKYFSPEIRTVE 273 D I + E++ ++K + Sbjct: 238 RSLDEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLMEMRDANAGGEKKMVT--EYNAR 295 Query: 274 QLVF---------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYI 320 ++ + + D + G F A+E + + LG F + Sbjct: 296 HILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESSEDTNSRGQGGDLGWFPADAF 355 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + LA G + G+ I + + S + + + + K Sbjct: 356 -GPDFGKQVEGLA-DGAVSEPFRTQAGWHIVQRVGSRQTDV-SAENQRAQVRETIGRRKL 412 Query: 381 SEKVKEDYKRL 391 E+ + L Sbjct: 413 EEEYNRYLQEL 423 >gi|121611714|ref|YP_999521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] gi|121556354|gb|ABM60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] Length = 482 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 69/478 (14%), Positives = 136/478 (28%), Gaps = 92/478 (19%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + V + + + I+++ + + E L ++L+ L+ Q Sbjct: 78 VAVVNSEPVTNNEVRSRLVRAEAQIARQGASMPSRE-----WLAHEVLERLILERVQLQQ 132 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + G+ D + + N + + F +RL R+GI ++ + L Sbjct: 133 ARESGIRVDDFALAQAEQGV----ARQNGMTLEQFYARLERDGIGKERFRAELRDQLLEQ 188 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + R VD A S + Q+ Sbjct: 189 RLRE-----------------------REVD----------ARVQVSEQDIDQY------ 209 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 + + K +EI+ + ++ E R Sbjct: 210 ----------LHAEPPAGAQAKPMEINLGHVLVLVPEDATPAQVAERR----------AR 249 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL--AKKGDFTP 340 A +A + L+ G F +A E + G D + S G Sbjct: 250 AQQAAERLRSGADFATVAREFSDAPEGQRAGGMLGLRPVDRYPELFVSSTRGLPVGSLVG 309 Query: 341 VIHGSFGYVIAHVSNIKPSFTVS--FQEVKKDIA----NQMRITKASEKVKEDYKRLEEF 394 + G+ + V + + Q + I +M T A+E++ + +R+ Sbjct: 310 PVRSPAGFHLLKVEQRVIAGQPATVLQSHARHILLRTGPRMSETAAAERLADYRRRV--- 366 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 LA ++R S D G +P EQ L + + Sbjct: 367 LAGQADFAALAREH---SQDDGSAKKGGDLGWANPGQYVPEFEQALQAL--------QPG 415 Query: 455 TVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 ++ P + V + E + R L E ++ + K + S L Sbjct: 416 DISAPLVTRFGVHLIELLERRQASLTAREQRDMARQAVREKKLDQAYISWTQDLRARA 473 >gi|113969251|ref|YP_733044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4] gi|121956472|sp|Q0HLT0|SURA_SHESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|113883935|gb|ABI37987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4] Length = 434 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 116/382 (30%), Gaps = 71/382 (18%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N L ++++ L+ Q + IGL ++ I K Sbjct: 56 RAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189 + ++ EG++ +Y + + ++ ++ ++ S + + E Sbjct: 112 TVAQMQQKIESEGLSFGQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171 Query: 190 RSVDY------IVLNNRHVPAIADPSNAVLTQWFEKYK--DNYRAPEYKRIS-------- 233 + V+Y I + N + S+ E+ K +++R S Sbjct: 172 KDVEYQIGHILIDVPNNPNSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGG 231 Query: 234 ---YILFDVHEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQL 275 Y+ + I+ + + + + E + Sbjct: 232 IWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHI 291 Query: 276 VFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS---FSKEYIPD 322 + ++ A + ++ G+ KF LA + + + G +++ I Sbjct: 292 LLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSAAKGGELGWAEPSIYV 351 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 A ++ SL++ + + G+ I + + K D +Q +A + Sbjct: 352 PEFAQTLNSLSQD-QISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAHQ 400 Query: 383 KV------KEDYKRLEEFLALG 398 + +E L+E A Sbjct: 401 LIFRRKFNEELQNWLDEMRADA 422 >gi|304389108|ref|ZP_07371152.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC 13091] gi|304336981|gb|EFM03171.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC 13091] Length = 348 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 133 IQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 192 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 193 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 252 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 253 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 310 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 311 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 339 >gi|257455283|ref|ZP_05620518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter aerosaccus SK60] gi|257447245|gb|EEV22253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter aerosaccus SK60] Length = 550 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 47/417 (11%), Positives = 121/417 (29%), Gaps = 73/417 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + S + Q + + V +++ ++LD L++ Sbjct: 143 DGVIAIVNDTPILRSQLDRAVAQASAQLQAQNKPVPPAQQLY-----PQVLDQLITKQIQ 197 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG------INEKEYID 153 I+ GL+A+ V + ++ S F +L + + +K D Sbjct: 198 LDLIKRQGLQAEENAVNAALTNLAQ---QNGVASLAEFQQKLDAQRAGGYQALRQKVSED 254 Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAV 212 + L + + + + L + E + + + A S+ Sbjct: 255 LAIQTLQQQQLASRIKISDQDVDNFLKSPESNALEKSQYRTLHIRVPFIADAAGKTSDKQ 314 Query: 213 LTQWF-------------EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-- 257 Q + + + EL Sbjct: 315 KKQALTVATQIAKNLQAENANIEQIMTDAQANYNAQIQGGDMGYHVAAELPTELSKNITA 374 Query: 258 ----------------------EKNKEKYFSPEIRTVEQLVFP---------NQKEADEA 286 +K + + ++ +++ D Sbjct: 375 LEVGQVTNPIATAEGYNVIKLVDKRGGQQKIIDQWHTRHILISPSTALPADMAKQQIDTI 434 Query: 287 FQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 ++ L++G+ F LA ++ G + + LG S+ + +S+ D++ Sbjct: 435 YEKLRQGEDFATLASTYSKDPGSASNGGDLGWVSEGDMV--PSFESMMKQTSVNDYSVPF 492 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEV-KKDIANQMRITKASEKVKEDYKRLEEFLALG 398 FG+ I V + +V +K++A ++ + + + +D+ +++ A Sbjct: 493 QTQFGWHILKVDEKR---QKDVSDVYRKNMAREILYQRMAPQALDDW--MQDLRAQA 544 >gi|319411235|emb|CBY91642.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria meningitidis WUE 2594] Length = 360 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 145 IQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 204 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 205 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 264 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 265 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 322 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 323 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 351 >gi|94309382|ref|YP_582592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans CH34] gi|121956449|sp|Q1LRA3|SURA_RALME RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|93353234|gb|ABF07323.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Cupriavidus metallidurans CH34] Length = 493 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 56/457 (12%), Positives = 123/457 (26%), Gaps = 83/457 (18%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + V L ++L+ LV Sbjct: 82 DEVVAVVNNSVITRRELLDRADEIESQLRAAKREVPPR-----PDLLGEVLERLVMERVQ 136 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q ++ G++ V I + NK S SR+ G++ +Y D K Sbjct: 137 TQAAQEAGIKVTDQEVDRAIESV----AQQNKMSATELRSRVEASGMSWTKYRDELRKQ- 191 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 V I L R V + + + + Sbjct: 192 --------------------------------VQVIRLREREVDSKVQVYDGEIDNYLAA 219 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + F+V + ++ + Q Sbjct: 220 RNGG----QAAASGPTEFNVAQILVRVPEDASDAQKA---------------------QL 254 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + +A+ + ++ G F +LA+ ++ SLG +P V A+++ L Sbjct: 255 KTKAEGLLKQVQGGADFAELAKANSEAPEASQGGSLGFREIGRLPAV-FANAVVDLQPGA 313 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQE---VKKDIANQMRI---TKASEKVKEDYKR 390 V+ + G+ + + + + + + + + + + K Sbjct: 314 VVPEVLESANGFHVVKLVSKRTAAAQPAASDRIAQTQVRHILIRTGPNMPEAEAKRQMAT 373 Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450 + + + G + +RR G G+ V L D + Sbjct: 374 IRDRITHGVDFADAARRYSQDG-SASQGGELGWVSPGELVPEFEQAMNRLRPGEISDPVV 432 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTD 485 ++ + + + E P + R EV Sbjct: 433 TQFGVHLIQVENR---RETEVSPEKQRDFARAEVREQ 466 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 12/144 (8%) Query: 262 EKYFSPEIRTVEQLVFPNQKEADE------AFQSLKKGKKFIQLAE---EQGKSLSDISL 312 ++ ++R + PN EA+ + G F A + G + L Sbjct: 344 DRIAQTQVRHILIRTGPNMPEAEAKRQMATIRDRITHGVDFADAARRYSQDGSASQGGEL 403 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G S + ++ L + G+ + + FG + V N + + ++ + Sbjct: 404 GWVSPGELV-PEFEQAMNRL-RPGEISDPVVTQFGVHLIQVENRRETEVSP-EKQRDFAR 460 Query: 373 NQMRITKASEKVKEDYKRLEEFLA 396 ++R K + ++L Sbjct: 461 AEVREQKLRAAYDDWVRQLRSAAY 484 >gi|223934638|ref|ZP_03626558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514] gi|223896593|gb|EEF63034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514] Length = 325 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 27/175 (15%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 Y R S + D + +++ + Y + P + EQ +K+AD+ Sbjct: 155 YIRQSIMTIDAKDYADWVKV-----RYIYIADAGYNSIPAKK--EQTSIETKKKADQILT 207 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---------VSLADSIFSLAKKGDFT 339 ++ G F +LA+E S ++ G Y+ + ++F L K+G+ + Sbjct: 208 KIRNGTDFAKLADEFTDSPENVVDGKKQGGYMGWRARSWTQFTPAFEAAVFKL-KQGEVS 266 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKK---DIANQMRITKASEKVKEDYKRL 391 I FGY +A V EVK ++ + K + + + Sbjct: 267 EPIRSDFGYYLAKVEATG-------LEVKDKDPELKKLIADGKVRPLIDSTLENI 314 >gi|262372454|ref|ZP_06065733.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205] gi|262312479|gb|EEY93564.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205] Length = 442 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 46/417 (11%), Positives = 122/417 (29%), Gaps = 69/417 (16%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73 A + ++ F+ V V + S + + + Sbjct: 17 ATVLAALISSSM-------HSFAQPTDEVVAIVDNSVILKSDLEQGIAETEHQLKAQNKT 69 Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133 V + + ++LD L+ + ++ G++AD + + + + + Sbjct: 70 VPPQQYLQM-----QVLDQLIIRQAQLEQVKRYGIKADEKSLNAAVLKVA---NQSGATT 121 Query: 134 HDVFVSRLAREGINEKEYID---HYTKMLSRTDV-VGMFVGGMRPSNLLLD------QAK 183 + F +L I Y + + L+ + + ++ S+L ++ + + Sbjct: 122 LEAFQQKLDA--IAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDLDVENFLNSPEGQ 179 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-------------------Y 224 V ++ ++ + + V + Sbjct: 180 AALGTQAHVIHMRISGDNAAEAQKVALEVKNALTNSDDPKAISSKLSTSSVKVDGADMGF 239 Query: 225 RA----PEYKRISYILFDVHEKEKKIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP 278 R+ P + + + I + + L+ K ++ + ++ Sbjct: 240 RSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQKALVDQYQTRHILIQ 299 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSL 325 ++ D + K G+ F LA + G + SLG S + Sbjct: 300 PSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSNDTGSARDGGSLGWVSPGVMV-AEF 358 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 ++ + G + FG+ I V + + EV++ +A Q+ + + Sbjct: 359 EQTMKN-TPVGQISKPFQTQFGWHILQVMDTRQQDMTK--EVQERMARQILGERQFD 412 Score = 43.8 bits (102), Expect = 0.096, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 79/280 (28%), Gaps = 36/280 (12%) Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 E + + + + + + L+Q KR+ D LN + Sbjct: 59 TEHQLKAQNKTVPPQQYLQMQVLDQLIIRQAQLEQVKRYGI---KADEKSLNAAVLKVAN 115 Query: 207 DPSNAVLTQWFEK-------YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 L + +K +N R + ++ + +I+IS+ +++ Sbjct: 116 QSGATTLEAFQQKLDAIAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDLDVENFLNS 175 Query: 260 NKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313 + + V + QK A E +L ++ + S + Sbjct: 176 PEGQAALGTQAHVIHMRISGDNAAEAQKVALEVKNALTNSDDPKAISSKLSTSSVKVDGA 235 Query: 314 SFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSN----------------- 355 + ++ + + K G T +I+ G + + Sbjct: 236 DMGFRSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQKALVDQYQTRH 295 Query: 356 --IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 I+PS VS K+ I + KA E Sbjct: 296 ILIQPSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSN 335 >gi|167742962|ref|ZP_02415736.1| putative rotamase [Burkholderia pseudomallei 14] Length = 190 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 35 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 93 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 94 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 151 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 152 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 186 >gi|119944807|ref|YP_942487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] gi|119863411|gb|ABM02888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] Length = 439 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 50/406 (12%), Positives = 123/406 (30%), Gaps = 65/406 (16%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V ++ + S + + + ++ L K+ILD L++ Q Sbjct: 33 AVVNQEIILSSDLQRAQLDIQERYKNSDQTLPSGDK-----LTKQILDKLITDRLQLQIA 87 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 + IGL + ++ + + + + + ++L ++G N ++D L+ + Sbjct: 88 QRIGLRINDAQLQQTVQQI----AQKEGLTSEQLQAKLEKQGKNYAAFVDTIRDELTINE 143 Query: 164 VVGM-FVGGMRPSNLLLDQ-AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221 + + + S+ ++Q KR E + + + S A Q EK Sbjct: 144 IRQIEVRRRITISDQDVEQMVKRINAEGQKNTQFSFVHLLFKLDKESSAAE-QQRIEKKA 202 Query: 222 DNY---------------------RAPEY-----KRISYILFDVHEKEKKIEISNDELQA 255 + +A E + I+ + + + + ++ Sbjct: 203 QDLVKKIKLGANASQLALLNSEGPKASEGGDWGWRTINEMPTLFAGIFNEQQTNKGDVIG 262 Query: 256 EY------------EKNKEKYFSPEIRTVEQLVFPN-----QKEADEAF-----QSLKKG 293 + +K + ++ + ++A + + Sbjct: 263 PFKSDLGLHIIKIMDKKGAQNVMTVEVNARHILIKSNIILSDQKAQKLLTGYRQDIINGK 322 Query: 294 KKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 K F LA E + G ++ + + SL G+ + G+ I Sbjct: 323 KSFAALAREYSQDPGSAVKGGDLGWADPSMYVPEFKELALSLP-VGEISQPFRTMHGWHI 381 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 V N + S T Q K+ + + + +V + + Sbjct: 382 LEVINKRESDTTE-QATKQKAYSLLFQQRFPAEVYAWMNEIRQEAY 426 >gi|34540273|ref|NP_904752.1| hypothetical protein PG0452 [Porphyromonas gingivalis W83] gi|34396585|gb|AAQ65651.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 715 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 75/651 (11%), Positives = 181/651 (27%), Gaps = 88/651 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 LE IR + + + + V F+I S + F V+ + +K+ + Sbjct: 4 LEKIRGKAGLLI--VVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQR 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K Q G + E+ L+ ++ V L Q + +GL + I Sbjct: 62 LKAMEKRAEQS-GTKITDEQ--RASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALI 118 Query: 120 ARS--------PLFHGKDNKF--SHDVFVSRLA-------------REGI-----NEKEY 151 F + L ++G +E + Sbjct: 119 IGDGVQPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKLQPAEQQGYLYEIQSEWQS 178 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSN 210 ++ + +G + N +D +R V + ++ Sbjct: 179 VEKQIADTRMQEKLGALLTRSYAIN-DIDARYESGVPSREVAVAQAPISVIGDTSIRATD 237 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + +++ ++K+ + Y +Y S ++ Sbjct: 238 EEIKKYYNEHKEFFVQK-----------------------------YPSTIVQYISSQVV 268 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 Q + + E + +++ LA S + ++ ++ ++ + F Sbjct: 269 PSAQDMANAEVEMQKVRTEMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEF 328 Query: 331 -SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 A G+ + + Y + + K F+ + I + + A+ Sbjct: 329 IKTATPGEVNIPMLENNHYSLVKLVAKKSG----FESLNVAI---IALDSAN---LSKAD 378 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 L L G +R + ++ E + ++ Sbjct: 379 SLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLDTLF 438 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + V + K P +++ + E + K +L E Sbjct: 439 SVPSNRVIKMNQDKFVFLAKAFNPK--PAVDKYKIAYI-GVDANFSDETYNKKFMELN-E 494 Query: 510 YSKEGKNFRDIGKNL---GASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFP 564 GK F + + G S+ ++ + N + +S + V Sbjct: 495 MLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEEDEVNEKI 554 Query: 565 IENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKD-LLDSVIAYLKSQ 613 G Y+V ++ + +K + + + + ++A LK++ Sbjct: 555 FRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAK 605 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 33/355 (9%) Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK-----EYIPDVSLADS-------- 328 +AD +L +G F A + G +PD ++ ++ Sbjct: 376 KADSLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLD 435 Query: 329 -IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKE 386 +FS+ + F + +A N KP+ K IA + + E + Sbjct: 436 TLFSVPSN-RVIKMNQDKFVF-LAKAFNPKPAVD------KYKIAYIGVDANFSDETYNK 487 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + L E L G +++ + + + + + A V V IP +++ Sbjct: 488 KFMELNEMLNSGKPFPKLAEQARSKGLSIE--ENAEVTVFSDHVGNIPSSREIVSWALKA 545 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 ++ + + +K+ IP+ R +E++ + + K E++ + Sbjct: 546 EEDEVNEKIFRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAK 605 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566 L+ N + + T I+ + + S P+ + Sbjct: 606 KLD------NLEAYASAMNTKIDTLAGIS--YSPRGGEAAELAGYAMSTPLTKLSEPFAA 657 Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621 VV +T ++ Q + I+ + + + + Q VT + Sbjct: 658 RNYVMVVKPLTQNEKAAGQSVEAQIAQKRRALGQQTAYRAFRKMLDQVPVTDNRA 712 >gi|126641684|ref|YP_001084668.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter baumannii ATCC 17978] gi|126387568|gb|ABO12066.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter baumannii ATCC 17978] Length = 180 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 14/185 (7%) Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 F K+ + + L +G +WV++++ A + L + + +VK K + Sbjct: 2 FNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVKAKVIDEKARKAAQ 61 Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV--- 557 +K ++ E+ + + + + R ++ FS P Sbjct: 62 AKIATMLTEFKTQ--PAEQVVAKNKVAFESAGVFTR----SQGLKRAIERAAFSVPTPKP 115 Query: 558 --EMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 V + N L V NS P + + Q + +L+ YLKS Sbjct: 116 GMWSVTTANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSRGQQILEDYSEYLKS 175 Query: 613 QYSVT 617 + Sbjct: 176 HAKIK 180 >gi|71909270|ref|YP_286857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] gi|122070644|sp|Q479U4|SURA_DECAR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|71848891|gb|AAZ48387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas aromatica RCB] Length = 438 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 62/475 (13%), Positives = 136/475 (28%), Gaps = 94/475 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V VG + + L + ++ G + + L++++L+ L+ Sbjct: 37 DRIVAVVGSDVITYFELRTRLTAALKQLQKQ-GTPLPPQDV----LERQMLERLIMERAQ 91 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q+ + G++ D ++ I R + ++ K Sbjct: 92 LQYGRETGMKIDDTQLDLAIGRIAA------------------GNKMTVPQFRAALEKDG 133 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLTQWFE 218 Q +F E R + + L R V + S + + Sbjct: 134 V--------------------QYAQFREEIRNEMVTVRLREREVDSKLVISEGEIDNYL- 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + E ++++IL E +PE + Sbjct: 173 ANQTATGSEEEYQLAHILLRAPESA----------------------TPEQ------LQK 204 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 ++ ++A + + G+ F QL + LG + +L S + Sbjct: 205 LRQRGEQALKRARAGENFAQLTAAFSDAPDALQGGDLGW--RPLARLPALYAEAGSRLQS 262 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT----KASEKVKEDYKRL 391 G+ + ++ S G+ I + + + V++ A + I + + + + Sbjct: 263 GEVSDLLRSSAGFHIVKLVSKRGGSAP--ASVQQTHARHILIRSSEVLSEAEATRKLEAV 320 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 E +A G E +R + + G V L ++ Sbjct: 321 RERIANGVDFAEQARLYSQDGSAAKGGELGWLNP-GDTVPEFERAMDALK--------IN 371 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + V +Q+ E RD E ++ + K E QL Sbjct: 372 EVSQVVQSPFGMHLIQVLERR-ERDVSAERQRAVARQALRERKLDEAYQDWLRQL 425 >gi|294790992|ref|ZP_06756150.1| peptidylprolyl isomerase PrsA1 [Scardovia inopinata F0304] gi|294458889|gb|EFG27242.1| peptidylprolyl isomerase PrsA1 [Scardovia inopinata F0304] Length = 301 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 26/187 (13%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 ++ + + +EKYK Y +A + I L +K + S + Sbjct: 75 SVTDKQVDKAYEKYKKQYGSGFSAYLSQNNYTKASFKRGIRTNLLSEVALKKLKKPSQAQ 134 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ ++ TV+ ++ ++ A L GK F LA+ S Sbjct: 135 LKDAWKTYHP------QVTVQHILTQDEATARSVIAQLNAGKDFASLAKTYSLDTSSKDE 188 Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 G S + D + D+ + L K + + GY + + + SF+ K Sbjct: 189 GGKISFLSTDRSYDSTFKDAAYKLQKGKYTKEPVKVTDGYEVIKM--VSNPGKGSFESRK 246 Query: 369 KDIANQM 375 K++ + Sbjct: 247 KELTETV 253 >gi|251772783|gb|EES53345.1| probable peptidyl-prolyl cis-trans isomerase [Leptospirillum ferrodiazotrophum] Length = 289 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 6/176 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + + K+++++ ++Q ++K++++ P V QL+ P+QK AD SL+K K F Sbjct: 116 LIKTQVDDKVKVTDADVQGYFDKHRQEIKQPGYVEVRQLIIPDQKTADRIVSSLRKKKGF 175 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 + E+ +G + +P A F + G T I G + Sbjct: 176 SRAIEKF----KGGPVGKIFEGTVP-PQFAKFFFGVP-AGSVTGPIALKDGIHYFKIDKQ 229 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 P +SF + K I + + ++ L + + + S Sbjct: 230 VPGKLLSFDQAKAGITQFLTSRMKQDLYQKYLNSLRAKTKIEINQKSLGELMGAAS 285 Score = 45.0 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 46/260 (17%) Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461 D + + I + A KD+ A +L R+ + LP+ Sbjct: 38 DNVVAKVGTREITKESLQSAIKDMNLPSSAPASVPSDVLNRLIDNTLITEEAEQEGLPN- 96 Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA-----------NQLVLEY 510 P +KLE+ + + +V K ++ E Sbjct: 97 ----------RPDIRKKLEDARNRI---LRQALIKTQVDDKVKVTDADVQGYFDKHRQEI 143 Query: 511 SKEG--------KNFRDIGKNLGASLLTTNQINRMDNENKFFG---------YDGISQVF 553 + G + + +SL +R + K ++ F Sbjct: 144 KQPGYVEVRQLIIPDQKTADRIVSSLRKKKGFSRAIEKFKGGPVGKIFEGTVPPQFAKFF 203 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAY 609 G PI FK+ G + D+ + +TQ M +DL + Sbjct: 204 FGVPAGSVTGPIALKDGIHYFKIDKQVPGKLLSFDQAKAGITQFLTSRMKQDLYQKYLNS 263 Query: 610 LKSQYSVTVHDNLIQRYLDG 629 L+++ + ++ + + Sbjct: 264 LRAKTKIEINQKSLGELMGA 283 >gi|22124271|ref|NP_667694.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis KIM 10] gi|45442924|ref|NP_994463.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Microtus str. 91001] gi|170026250|ref|YP_001722755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis YPIII] gi|186893515|ref|YP_001870627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis PB1/+] gi|21957040|gb|AAM83945.1|AE013636_3 peptidyl-prolyl cis-trans isomerase C [Yersinia pestis KIM 10] gi|45437791|gb|AAS63340.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Microtus str. 91001] gi|169752784|gb|ACA70302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis YPIII] gi|186696541|gb|ACC87170.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis PB1/+] Length = 98 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 14 HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 72 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 73 SCELLQP---YGPVKTQFGYHIIKV 94 >gi|227892857|ref|ZP_04010662.1| peptidylprolyl isomerase [Lactobacillus ultunensis DSM 16047] gi|227865359|gb|EEJ72780.1| peptidylprolyl isomerase [Lactobacillus ultunensis DSM 16047] Length = 308 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 78/239 (32%), Gaps = 28/239 (11%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +++ + L + E + Y S+ + + + Sbjct: 48 ITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------------VSSKKVDKQYN 94 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270 YK Y + + ++ ++ +S L+ + K + Sbjct: 95 NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKVTKSQEEKAWKSYQPKV 154 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325 TV+ ++ + A+ + LK GK F LA++ + + S + D + Sbjct: 155 TVQHILVAKKSTAETIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAF 214 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + F L + + GY + + N P+ F + KK I +++ + A ++ Sbjct: 215 KTAAFKLTTGEVTSTPVKSQSGYHVIKMIN-HPAKGK-FADHKKAIDDEIYASMAQDQA 271 Score = 42.3 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 70/233 (30%), Gaps = 40/233 (17%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + +STV S K+ + + + K L N++ Sbjct: 33 NSGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 72 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + ++ Sbjct: 73 NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 122 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 L + + + ++A + Y +V +I++ + + + + Sbjct: 123 KTNLLSEQALKHIK---KVTKSQEEKAWKSYQPKVTVQHILVAKKS-------TAETIIK 172 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + K + + + K + +++ L + ++ K + E Sbjct: 173 QLKDGKSFSSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAFKTAAFKLTTGE 225 >gi|21672423|ref|NP_660490.1| survival protein SurA precursor [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091307|sp|Q8KA01|SURA_BUCAP RecName: Full=Chaperone surA homolog; Flags: Precursor gi|21623033|gb|AAM67701.1| survival protein SurA precursor [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 432 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 50/405 (12%), Positives = 124/405 (30%), Gaps = 78/405 (19%) Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN---SWKQELGMISQK 70 K++ ++ FL + + + V Q + S S K+E + Sbjct: 1 MKVYFFLILYVFLSFFSITYSKELEIDKIIAIVNNQIILNSDVNQVLFSLKEEDQRVKIP 60 Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130 + L KI+ L++ + + + + +V +++ + K N Sbjct: 61 LKINF---------LRNKIIKKLITETLILEEAKKFNIVVTDDQVNNVLSK---YALKKN 108 Query: 131 KFSHDVFVSRLARE---GINEKEYIDHYTKMLSRTDVVGMFVG-----GMRPSNLLLDQA 182 ++ + L + +Y + L + + + +L L++ Sbjct: 109 ITIEELKRNILMNNTNTSFSYNDYFNKIKNSLKVKIIQDYVLHNRVHISEKEVDLFLNKL 168 Query: 183 KRFYFENRSVDY------------------IVLNNRHVPAIADPSNAVLTQWFE---KYK 221 E + +D + H +A ++E K Sbjct: 169 INTQNELKKIDINCIFLPFIKEKNKIFIKNTKILADHFAKKIK-KDASFNYYYEYFKKNN 227 Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDEL-------QAEY--------EKNKEKYFS 266 + + + E + S K I +++ + Y +NKE + Sbjct: 228 NIFLSKEIRSKSLKYLKKIFLNKLKIIKKNQILGPILGLKGFYILKINKIENENKENLTT 287 Query: 267 PEIRTVEQLVFP-----NQKEADE----AFQSLKKGK-KFIQLAEEQGKSL----SDISL 312 ++ + + K+A + ++K K F ++ + L Sbjct: 288 --EFHIQHCLIRPSVILDDKQAKNSIYYIYNNIKNKKYSFDYAVQKLSHDVYSSHKKGDL 345 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 G S ++ + + + L K + + I +FG+ I + +I+ Sbjct: 346 GWISTDFFSN-DFRNFLTDLRKN-EISKPIKSNFGWHIIKLLDIR 388 >gi|238024223|ref|YP_002908455.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae BGR1] gi|237878888|gb|ACR31220.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae BGR1] Length = 319 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 81/230 (35%), Gaps = 13/230 (5%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 V G+ + L+QA+ + + + A + ++ Y A E Sbjct: 78 VNGVAITRDQLEQARVAANQPDTASVRAALKNQLITRELLRQAAASAHYDTYPQVLAAVE 137 Query: 229 YKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 + ++ + + K +++ E++A+Y++ E++ +V ++ AD A Sbjct: 138 QAKSLAMTQAWLRDHIKPEPVTDAEVKAKYDEVVAGLGQTELKP-RVIVLKDRASADAAL 196 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SKEYIPDVSLADSIFSLAKKG 336 LK+G F QLA + + G+ + LA+++ L G Sbjct: 197 AQLKQGADFAQLARQAADGPNAAQGGALNWVSFRQPVPPGGQQGWPQPLAEALLKLPVGG 256 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + + + I V + + ++ + K + + + E Sbjct: 257 VTSAPVEADGRFWILRVDEKRATRIPAYADAKDVLRRGLEQAALQKATIE 306 >gi|254420790|ref|ZP_05034514.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3] gi|196186967|gb|EDX81943.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3] Length = 309 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 7/159 (4%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 IS+ +Q Y + + E V ++ + EA+ L +G F +A E+ Sbjct: 118 AISDQAVQTLYNEQLRLAKTSEEIRVRLILSRTKPEAEAVIGILGQGASFEAVAMERSVD 177 Query: 307 ----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 S LG + + +P G G+ + V + + Sbjct: 178 EATRFSGGDLGYSTLDVMPQAYAG--ALRDKPAGSTVGPFQTEGGWAVLRVEDRRKESPP 235 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTS 400 + ++ + I + + +++ + + + L G + Sbjct: 236 TLEQARPQIVRYLTYEGVRQLLEQLRGKAKVDVLLAGET 274 Score = 41.5 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 8/144 (5%) Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 ++R+ + K + + + L G S + ++ + F+G D+ + Sbjct: 139 EEIRVRLILSRTKPEAEAVIGILGQGASFEAVAMERSVD----EATRFSGGDLGYSTLDV 194 Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492 +P R D P +G + +++++ LE+ + + Sbjct: 195 MPQAYAGALR----DKPAGSTVGPFQTEGGWAVLRVEDRRKESPPTLEQARPQIVRYLTY 250 Query: 493 VKTAEEVSSKANQLVLEYSKEGKN 516 + + + ++ G+ Sbjct: 251 EGVRQLLEQLRGKAKVDVLLAGET 274 >gi|300724849|ref|YP_003714174.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC 19061] gi|297631391|emb|CBJ92088.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Xenorhabdus nematophila ATCC 19061] Length = 434 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 47/372 (12%), Positives = 115/372 (30%), Gaps = 63/372 (16%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + E+A L +IL+ L+ + Q + + + IA N Sbjct: 58 GQQIPDEKA----LRHQILERLIMDDIVLQMANRMQITIPDQTLDSAIAGIAA----QNH 109 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAK-RFYFEN 189 S L +GI+ Y + K ++ ++V + +D + +N Sbjct: 110 LSLAQLKQNLVADGISFDTYRNQIRKEMTISEVRNNEVRRRITILPQEVDSLTNQLEGQN 169 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + +++ +P +P+ A + + E N + + + + + Sbjct: 170 NQDTELNISHILIPLPENPNQAQVEK-AETTVRNILSELKNGVDFGKLAITYSGDTQALK 228 Query: 250 ----------------NDELQAEYEKNK---------------------EKYFSPEIRTV 272 ++LQ+ Y+ + + Sbjct: 229 GGNMGWNKLQELPSLFTEQLQSAYKGQIIGPIRSGVGFHILKVNDTRGGNRSVAVTEVNA 288 Query: 273 EQLVFPN-----QKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGSFSKEYIP- 321 ++ +A L++ F + A+E + G +P Sbjct: 289 RHILLKTSPVMNDDQARSELMKLREEILSGKTTFEKAAKEYSEDPGSAMRGGELGWNLPS 348 Query: 322 --DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379 D + D++ L +KG+ + +H +FG+ + + + + + K + K Sbjct: 349 AYDPAFRDALTKL-QKGEISQPVHSAFGWHVIQLLDSRK-VDKTDAAQKDRAYRLLFNRK 406 Query: 380 ASEKVKEDYKRL 391 +E+ + + L Sbjct: 407 FNEEAQSWMQEL 418 Score = 56.5 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 56/387 (14%) Query: 148 EKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205 EK + L D+V + + LD A + L V Sbjct: 64 EKALRHQILERLIMDDIVLQMANRMQITIPDQTLDSAIAGIAAQNHLSLAQLKQNLVADG 123 Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265 D YR K ++ +E ++I I E+ + + + + Sbjct: 124 ISF-------------DTYRNQIRKEMTISEVRNNEVRRRITILPQEVDSLTNQLEGQNN 170 Query: 266 SPEIRTVEQLVFP-----NQKEADEA-------FQSLKKGKKFIQLAEEQGKS---LSDI 310 + ++ P NQ + ++A LK G F +LA L Sbjct: 171 QDTELNISHILIPLPENPNQAQVEKAETTVRNILSELKNGVDFGKLAITYSGDTQALKGG 230 Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 ++G + +P + A KG I G+ I V++ + S + + Sbjct: 231 NMGWNKLQELPSLFTEQ--LQSAYKGQIIGPIRSGVGFHILKVNDTR-GGNRSVAVTEVN 287 Query: 371 IANQMRI-------TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423 + + +A ++ + + + L+ T+ ++ ++ S D G+ Sbjct: 288 ARHILLKTSPVMNDDQARSELMKLREEI---LSGKTTFEKAAKEY---SEDPGSAMRGGE 341 Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEE 481 A P L ++ + ++ P S + + + +R D+ Sbjct: 342 LGWNLPSAYDPAFRDALTKLQKGE--------ISQPVHSAFGWHVIQLLDSRKVDKTDAA 393 Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVL 508 + K EE S +L Sbjct: 394 QKDRAYRLLFNRKFNEEAQSWMQELRA 420 >gi|218768937|ref|YP_002343449.1| putative rotamase [Neisseria meningitidis Z2491] gi|121052945|emb|CAM09299.1| putative rotamase [Neisseria meningitidis Z2491] Length = 347 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 27/210 (12%) Query: 206 ADPSNAVLTQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK 259 S A + K +P +R I + +S E+ A E+ Sbjct: 132 IQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQ 191 Query: 260 -NKEKYFSPE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQG 304 K+ PE + ++ E + + G F LA + Sbjct: 192 AQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS 251 Query: 305 KSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + S LG F+ + + +++ +L K G + FG+ I ++ ++ + T Sbjct: 252 QDASAGNGGDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGT 309 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + ++ + + KA + + L Sbjct: 310 PQ-ERIRNSVRQYIFQQKAEQATVNLLRDL 338 >gi|254720016|ref|ZP_05181827.1| Chaperone surA precursor [Brucella sp. 83/13] gi|265985025|ref|ZP_06097760.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13] gi|306838443|ref|ZP_07471287.1| Chaperone surA precursor [Brucella sp. NF 2653] gi|264663617|gb|EEZ33878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13] gi|306406482|gb|EFM62717.1| Chaperone surA precursor [Brucella sp. NF 2653] Length = 311 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + + + S DE Q YE N+ ++ S I ++ EA Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQEAR 174 Query: 288 QS------------LKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 + + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|260568390|ref|ZP_05838859.1| LOW QUALITY PROTEIN: PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4 str. 40] gi|260155055|gb|EEW90136.1| LOW QUALITY PROTEIN: PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4 str. 40] Length = 193 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 16/141 (11%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQSLKKGK 294 S DE Q YE N+ ++ S I ++ E A + + Sbjct: 16 SASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPA 75 Query: 295 KFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F +A E S +LG ++ ++ + I FGY I Sbjct: 76 TFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERMTPGETTANPIESRFGYHIV 134 Query: 352 HVSNIKPSFTVSFQEVKKDIA 372 + + F V IA Sbjct: 135 RLDRRVEGEELPFDYVVDKIA 155 >gi|325202891|gb|ADY98345.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240149] gi|325207310|gb|ADZ02762.1| surA/PPIASE domain protein [Neisseria meningitidis NZ-05/33] Length = 348 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + ++ + + ++ S A + Sbjct: 81 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 140 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 K +P +R I + +S E+ A E+ K+ Sbjct: 141 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 200 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 201 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 260 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ +L K G + FG+ I ++ ++ + T + ++ Sbjct: 261 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 317 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 318 SVRQYIFQQKAEQATVNLLRDL 339 >gi|325137107|gb|EGC59703.1| rotamase [Neisseria meningitidis M0579] Length = 360 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + ++ + + ++ S A + Sbjct: 93 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 152 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 K +P +R I + +S E+ A E+ K+ Sbjct: 153 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 212 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 213 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 272 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ +L K G + FG+ I ++ ++ + T + ++ Sbjct: 273 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 329 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 330 SVRQYIFQQKAEQATVNLLRDL 351 >gi|325131008|gb|EGC53735.1| PPIC-type PPIASE domain protein [Neisseria meningitidis OX99.30304] Length = 339 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + ++ + + ++ S A + Sbjct: 72 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 131 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 K +P +R I + +S E+ A E+ K+ Sbjct: 132 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 191 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 192 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 251 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ +L K G + FG+ I ++ ++ + T + ++ Sbjct: 252 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 308 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 309 SVRQYIFQQKAEQATVNLLRDL 330 >gi|254805678|ref|YP_003083899.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis alpha14] gi|254669220|emb|CBA08040.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis alpha14] Length = 351 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 30/262 (11%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI---VLNNRHVPAIADPSNAVL 213 ++++R + ++ + + ++ S A + Sbjct: 84 EVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEI 143 Query: 214 TQWFEKYKD-NYRAPEYKR-----ISYILFDVHEKEKKIEISNDELQAEYEK-NKEKYFS 266 K +P +R I + +S E+ A E+ K+ Sbjct: 144 DAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITL 203 Query: 267 PE-----IRTVEQLVFPNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---D 309 PE + ++ E + + G F LA + + S Sbjct: 204 PEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNG 263 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG F+ + + +++ +L K G + FG+ I ++ ++ + T + ++ Sbjct: 264 GDLGWFADGVMV-PAFEEAVHAL-KPGQVGAPVRTQFGWHIIKLNEVRDAGTPQ-ERIRN 320 Query: 370 DIANQMRITKASEKVKEDYKRL 391 + + KA + + L Sbjct: 321 SVRQYIFQQKAEQATVNLLRDL 342 >gi|148653552|ref|YP_001280645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. PRwf-1] gi|148572636|gb|ABQ94695.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. PRwf-1] Length = 460 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 54/420 (12%), Positives = 117/420 (27%), Gaps = 73/420 (17%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 S + + V + S +++ I +++R L +L++L+ Sbjct: 49 STNGMIALVNDTPILKSQLVSAMATAQARIQASGQPAPSAQR-----LQNDVLNSLILRQ 103 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL--AREGINEKEYIDHY 155 ++ G+ D V +AR F S L + G Sbjct: 104 LQLDMVKRAGIRPDADVVNQSLAR---FAQSQGLTSLSQLQQTLDAKQPGSYASLRAQVI 160 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR---------------SVDYIVLNNR 200 + + +R + +D R S DY + Sbjct: 161 EEESLKALQQSQVANRVRITEQDIDAFLASPEAQRLQSAEYRTIHIRIPFSDDYNRITES 220 Query: 201 HVPAIADPSNAV-------------LTQWFEKYKDNYRAPEY----------------KR 231 + L + NY AP + Sbjct: 221 EKQTALQIAQQAKNLLMNTDDAQSVLDELSAGIAKNYVAPVQGGDMGYHEASGLPTDIAK 280 Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKE 282 L E +I ++ +K V ++ +++ Sbjct: 281 QITPLNVGQVTEPQITPEGIDVVKLVDKRNNDNMIIPQWKVRHILIKTDEQNSDALAEQK 340 Query: 283 ADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338 ++ ++ L+ F LA + G + L ++ + + + KGD+ Sbjct: 341 INDLYEQLRHDADFSALASTYSNDPGSAGRGGDLDWVAEGQMV-PEFEE-MMKRTPKGDY 398 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 + FG+ I V + + VK+++A + + + + +ED+ L+E A Sbjct: 399 SIPFKSQFGWHILKVEDTREKDVS--DTVKRNLAREALYQRLAPQAQEDW--LQELRANA 454 >gi|296532547|ref|ZP_06895259.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC 49957] gi|296267124|gb|EFH13037.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC 49957] Length = 330 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 7/148 (4%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQG--- 304 + + L+A Y++ E ++ + EA A + +++ G F ++A + Sbjct: 143 TPEALRARYDREIAGKPGEEEVHARHILTATEAEARAALEEVRRPGADFAEVARRRSTGP 202 Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVS 363 + LG F K + A++ F+L + G + + +FG+ I V + + S Sbjct: 203 GTQQGGDLGFFKKGDMV-PEFAEAAFAL-QPGQISQAPVRSAFGWHIIKVEERRTAPVPS 260 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 F+E +++ + V+ Sbjct: 261 FEESAEELRKAAFEEAVNAAVESTVAAA 288 >gi|126665822|ref|ZP_01736803.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] gi|126629756|gb|EBA00373.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17] Length = 268 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-----------QKEADEAFQSLKKGKK 295 + + + + + N ++ SP + V ++ ++ D+ ++L +G+ Sbjct: 91 DPTEQDCERFFNANPRRFCSPVVMAVSHILLAAAPDDVAELMRQEEVGDQLLKALFEGRS 150 Query: 296 -FIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA++ S SLG SK D + +L K+G + +I +GY I Sbjct: 151 RFDDLAKQYSACESRHQSGSLGQISKGQTVD-EFERPVLNL-KEGLHSGLIETRYGYHIV 208 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMD 402 V + ++ VK I + + ++ + L E G ++ Sbjct: 209 RVDQRIDGQPLPYEHVKPKIRQYLSESVTRRACRQYLQVLAAEAGVEGVDLE 260 >gi|296113335|ref|YP_003627273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis RH4] gi|295921029|gb|ADG61380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis RH4] gi|326563565|gb|EGE13824.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis 12P80B1] gi|326570173|gb|EGE20218.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis BC8] Length = 434 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 ++ S V V + + S + + + QK G V ++A+++ L Sbjct: 23 QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149 D L++ I G+ + + ++ + G + S F S+L E + Sbjct: 77 DELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYV 133 Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197 + + + + +R ++ +D R V Y +L Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193 Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 V S + + Y + + + I+ Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253 Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281 K + ++ ++ K ++ ++ ++ Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + +Q L++G F LA SLG ++ + + + AK GD Sbjct: 314 KINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 F+ FG+ I V++IK + DI Q R A E Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406 >gi|88859123|ref|ZP_01133764.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas tunicata D2] gi|88819349|gb|EAR29163.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas tunicata D2] Length = 430 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 42/419 (10%), Positives = 122/419 (29%), Gaps = 67/419 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V +V V S + G + ++ A L + ++ L++ L Sbjct: 28 DKVVATVNEGVVLQSEIDTIINRVKSRALTD-GQSLPTDDA----LRLQAIERLINQELL 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E +GL+ ++ + + D+ + G + + Y + + Sbjct: 83 MQMSERMGLQISDAQLDQTLMMMA---KEQGGTLADL-RKTIESSGESYQAYREEMRVEM 138 Query: 160 S-RTDVVGMFVGGMRPSNLLLDQAKRFYF------ENRSVDYIVLNN-----RHVPAIAD 207 + + + + S ++ E + +I+++ A Sbjct: 139 TTQQVLRSNVERRIYISLQEIENLLTILEQQGQTNEEYDIGHILIDLPADGNAQEIEDAK 198 Query: 208 PSNAVLTQWFEKYKDNYR-----------APEYKRISYILFDVHEKEKKIEISNDE---- 252 + + + ++ A E ++ ++ + + + Sbjct: 199 VRAEKVIKLLNEG-SEFKRIAIASSGGSKALEGGQLGWMSINEMPTLFAEAVKGKKAGEI 257 Query: 253 -----------LQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQ----SLKK 292 + + + ++ ++++A LK+ Sbjct: 258 VGPLRSGAGFHIIKVQDIRGRQVVETVEVRSRHILIQPSIILSEEKARSMLAGFVKDLKE 317 Query: 293 GK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 GK F LA+E + G ++ + D++ SL K + ++G+ Sbjct: 318 GKADFATLAKEYSEDQGSALKGGEYDWTDPSTYVPAFRDTLLSLEKD-QLSEPFRSNYGW 376 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407 I + + + + + N+ + + K KE+ + + ++ + Sbjct: 377 HIVQLLDKRIADKTELAK-----RNRAQQMLFNRKFKEESFAWQREMREQAHIEILVDE 430 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 100/301 (33%), Gaps = 37/301 (12%) Query: 147 NEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 + + L +++ G++ S+ LDQ + + + Sbjct: 64 TDDALRLQAIERLINQELLMQMSERMGLQISDAQLDQTLMMMAKEQGG-----TLADLRK 118 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 + S + E+ ++ E++I IS E++ +++ Sbjct: 119 TIESSGESYQAYREE--------MRVEMTTQQVLRSNVERRIYISLQEIENLLTILEQQG 170 Query: 265 FSPEIRTVEQLVFPNQKE------------ADEAFQSLKKGKKFIQLA---EEQGKSLSD 309 + E + ++ + A++ + L +G +F ++A K+L Sbjct: 171 QTNEEYDIGHILIDLPADGNAQEIEDAKVRAEKVIKLLNEGSEFKRIAIASSGGSKALEG 230 Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 LG S +P A+++ K G+ + G+ I V +I+ V EV+ Sbjct: 231 GQLGWMSINEMP-TLFAEAVKG-KKAGEIVGPLRSGAGFHIIKVQDIRGRQVVETVEVRS 288 Query: 370 -----DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 + + KA + K L+E A ++ + ++ ++ D+ Sbjct: 289 RHILIQPSIILSEEKARSMLAGFVKDLKEGKADFATLAKEYSEDQGSALKGGEYDWTDPS 348 Query: 425 V 425 Sbjct: 349 T 349 >gi|238789352|ref|ZP_04633138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia frederiksenii ATCC 33641] gi|238794291|ref|ZP_04637904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia ATCC 29909] gi|238722495|gb|EEQ14149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia frederiksenii ATCC 33641] gi|238726375|gb|EEQ17916.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia ATCC 29909] Length = 98 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 14 HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 72 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 73 SCELLQP---YGPVKTQFGYHIIKV 94 >gi|188995374|ref|YP_001929626.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas gingivalis ATCC 33277] gi|188595054|dbj|BAG34029.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas gingivalis ATCC 33277] Length = 715 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 75/651 (11%), Positives = 181/651 (27%), Gaps = 88/651 (13%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59 LE IR + + + + V F+I S + F V+ + +K+ + Sbjct: 4 LEKIRGKAGLLI--VVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQR 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 K Q G + E+ L+ ++ V L Q + +GL + I Sbjct: 62 LKAMEKRAEQS-GTKITDEQ--RASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALI 118 Query: 120 ARS--------PLFHGKDNKF--SHDVFVSRLA-------------REGI-----NEKEY 151 F + L ++G +E + Sbjct: 119 IGDGVQPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKSQPAEQQGYLYEIQSEWQS 178 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSN 210 ++ + +G + N +D +R V + ++ Sbjct: 179 VEKQIADTRMQEKLGALLTRSYAIN-DIDARYESGVPSREVAVAQAPISVIGDTSIRATD 237 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + +++ ++K+ + Y +Y S ++ Sbjct: 238 EEIKKYYNEHKEFFVQK-----------------------------YPSTIVQYISSQVV 268 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 Q + + E + +++ LA S + ++ ++ ++ + F Sbjct: 269 PSAQDMANAEVEMQKVRTEMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEF 328 Query: 331 -SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 A G+ + + Y + + K F+ + I + + A+ Sbjct: 329 IKTATPGEVNIPMLENNHYSLVKLVAKKSG----FESLNVAI---IALDSAN---LSKAD 378 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449 L L G +R + ++ E + ++ Sbjct: 379 SLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLDTLF 438 Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + V + K P +++ + E + K +L E Sbjct: 439 SIPSNRVIKMNQDKFVFLAKAFNPK--PAVDKYKIAYI-GVDANFSDETYNKKFMELN-E 494 Query: 510 YSKEGKNFRDIGKNL---GASLLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFP 564 GK F + + G S+ ++ + N + +S + V Sbjct: 495 MLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEKDEVNEKI 554 Query: 565 IENGLSYVVFKVTNSKVGP-VQEKDKFISYLTQMMNKD-LLDSVIAYLKSQ 613 G Y+V ++ + +K + + + + ++A LK++ Sbjct: 555 FRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAK 605 Score = 38.0 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 13/163 (7%) Query: 285 EAFQSLKKGKKFIQLAEE---QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E + L GK F +LAE+ +G S+ + + + +++ ++ + I S A K + V Sbjct: 491 ELNEMLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEKDEV 550 Query: 342 IHGSFG-----YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 F VIA V + PS +++K+ IANQ+R+ K EK+ D K Sbjct: 551 NEKIFRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKA-----K 605 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 +++ + L + ++ + + E+A L Sbjct: 606 KLDNLEAYASAMNTKIDTLAGISYSPRGGEAAELAGYAMSTPL 648 >gi|297569281|ref|YP_003690625.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925196|gb|ADH86006.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 326 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 40/359 (11%), Positives = 102/359 (28%), Gaps = 75/359 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V Q + S + G ++L ++ + Sbjct: 34 DRVVAEVNGQIITLSELEAEMATIGEDFLR--GVPAGERAKARQEAQSQVLSGMIDQILV 91 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 ++ + G+ + +A+ +DN+ S + + L R G ++Y + Sbjct: 92 ERQAQRRGIFVGEREIDAAMAQIM----EDNRLSREELIRELERSGTTLEQYRQTLRTQI 147 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + ++ + V + +++E+ Sbjct: 148 LQARLLNL---------------------------------EVRERIVIPENRIRRYYEE 174 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 + + + + + + + E Sbjct: 175 HYADGSQQQGYHLL-------------------------QMGFAWDGDDQNRAE-----A 204 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 ++ A A + G F QLA E + S LG F ++ + D + I ++ G Sbjct: 205 KQRATGARDRVLTGGSFRQLARELSDLPSATSGGDLGVFEQDELAD-EMRRHILAMT-PG 262 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 + TP++ Y + + +++++++I + E + L E + Sbjct: 263 ELTPIMEIGGAYQFFKLLA-GGGVSRPYEDMREEIREILYQQALEENFERWVSNLREDV 320 >gi|238765154|ref|ZP_04626087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia kristensenii ATCC 33638] gi|238696644|gb|EEP89428.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia kristensenii ATCC 33638] Length = 99 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 15 HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 73 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 74 SCELLQP---YGPVKTQFGYHIIKV 95 >gi|330996060|ref|ZP_08319954.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT 11841] gi|329574057|gb|EGG55635.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT 11841] Length = 459 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 57/512 (11%), Positives = 147/512 (28%), Gaps = 113/512 (22%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQELGMISQKIGFVV 75 + FL G+ LF+ S ++ V V G + + S + G + Sbjct: 8 LYAFVFLFGGIQMHLFAQSPNNVVDEVIWVVGDEAILRSDVEAA--------RMDFGANI 59 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + + + L + +E D+ ++ + Sbjct: 60 SGNPYCVIP------EQLAIQKLFLHQAQLDSVEVDNSQISASM--------------EA 99 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 + R G ++++ ++Y K +++ + + E +V + Sbjct: 100 RLNELIMRAG-SKEKLEEYYHKTMTQ----------------IREMMFESLKEQYTVQKV 142 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE 252 ++ + + A + ++F+ ++ P + + I +++IE E Sbjct: 143 R---ENLTSDIKVTPAEVRRYFKDMPED-SLPWISDQVEVQIITQQPRIPQEEIERVKAE 198 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLA----EEQGKSL 307 L+ + G+ F LA E+ G + Sbjct: 199 LRDY------------------------------TDRVNNGESSFSTLAILYSEDPGSAR 228 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + + + D + A+ FSL + V+ +G+ I + + + V Sbjct: 229 YGGEMDYVGRGEL-DPAFANVAFSLTDPKKISKVVESEYGFHIIQLVDKRGDKVK----V 283 Query: 368 KKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEIS---------RREKIVSIDLPL 417 + + ++ + E+ S +E + R + + ++ Sbjct: 284 RHILRKPKLAQADIDTTMVRMDSIAEDVRKEKYSFEEAATFLSDDKDSRNNRGLMTNVKF 343 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY---MWVQIKESIPA 474 G ++ ++ V + + + V++K I A Sbjct: 344 DQSVGDQIRTSRFQLQELPAEVAKVVSTMKTGEISNPFLMVNSKGKEVCAVVKLKTHIKA 403 Query: 475 RDRKLEE----VLTDVKKDWKTVKTAEEVSSK 502 + E + V + K + + K Sbjct: 404 HRASMSEDFQVLKDVVMAKLQEQKINQWIKDK 435 >gi|226952980|ref|ZP_03823444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244] gi|226836301|gb|EEH68684.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244] Length = 437 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 49/426 (11%), Positives = 117/426 (27%), Gaps = 72/426 (16%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K + L L S F+ V V + S + + Sbjct: 4 KHFQHIFRATVLAALISS------SMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQ 57 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA------ 120 + + V + + ++LD L+ + ++ G++ D + + Sbjct: 58 LKAQNQTVPPKQYLQM-----QVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQS 112 Query: 121 ---RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV------------ 165 F K + + + + R I E I + + + Sbjct: 113 GSNSLSAFQQKLDAIAPGTYENL--RNRIAEDLAIGRLRQQQVMSRIKISDHDVENFLKS 170 Query: 166 --GMFVGGMRP-------SNLLLDQAKRFYFENR-----SVDYIVLNNRHVPAIADPSNA 211 G G + S ++ ++ E R S D ++++ A Sbjct: 171 PEGQAALGTQVHVLHMRISGTDNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGA 230 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE--LQAEYEKNKEKYFSPEI 269 + ++ P V + + + + L+ K ++ Sbjct: 231 DM-----GFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQ 285 Query: 270 RTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFS 316 ++ ++ D + +K G+ F LA + G + +LG + Sbjct: 286 YKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFATLAATFSNDPGSARDGGNLGWVN 345 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + G + FG+ I V++ + E ++ + Q+ Sbjct: 346 AGVMV-PEFEK-VMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTK--EAQERMTRQIL 401 Query: 377 ITKASE 382 + E Sbjct: 402 GERQFE 407 Score = 40.7 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 61/185 (32%), Gaps = 9/185 (4%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEAD 284 ++ + +I+IS+ +++ + + + V + QK A+ Sbjct: 142 DLAIGRLRQQQVMSRIKISDHDVENFLKSPEGQAALGTQVHVLHMRISGTDNNEVQKVAE 201 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIH 343 E +SL ++ + + + ++ + + + G T +++ Sbjct: 202 EVRRSLATSNDPKAISSKLSTGTVTVDGADMGFRALSEIPTELAARVTPLQVGQTTGLVN 261 Query: 344 GSFGYVIAHVSNIKPSFTVSFQ-EVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSM 401 G + + K + + + K I Q +S++ K+ L + G Sbjct: 262 VRDGTHVLKLLERKQNDQRALVPQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDF 321 Query: 402 DEISR 406 ++ Sbjct: 322 ATLAA 326 >gi|145588566|ref|YP_001155163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046972|gb|ABP33599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 279 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 7/160 (4%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPE---IRTVEQLVFPNQKEADEAFQSLKKG 293 ++ + I++ ++QAEY + + + + EA A +KKG Sbjct: 115 LELSTFMAQNPITDADVQAEYNREVSSLGPQGMITEYKISDIAVATEAEAQAALDRIKKG 174 Query: 294 KKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + F ++A + + G +P + + +L K + I G+ + Sbjct: 175 EPFDKVARSVSLGPNKAQGGAAGWVQPGQVP-PQIGSVLATLGKGQVCSAPIQMQQGWYL 233 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 V + K S +F++ K+ + + K E V + K Sbjct: 234 VKVEDKKSSKPPTFEQAKQAVRAGLIQKKQYEFVAKIAKD 273 >gi|269926821|ref|YP_003323444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum terrenum ATCC BAA-798] gi|269790481|gb|ACZ42622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum terrenum ATCC BAA-798] Length = 380 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 100/273 (36%), Gaps = 29/273 (10%) Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL------LLDQAKR 184 F + V+ + E I KE+ K + + M + + L ++ + Sbjct: 84 NFDPNGIVAVVNGEKITNKEFYQELEKRYGQDLISDMVITKLIEQEARKRGVSLSNEDMQ 143 Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244 + + + + + + L + ++ + Sbjct: 144 KALQQLQTAFPGQSIEEIAQGQNMTGDQLRE---------------QVRVMALLDKMLAP 188 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304 +++++ + + Y +N + + S E + Q+V N+++A +A Q+L+ GK ++ + G Sbjct: 189 QVKVTEQDARNFYNQNPQVFQSQEQLRLGQVVTDNEQQAADAAQALRDGKDLKEVIAKYG 248 Query: 305 K-----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG-YVIAHVSNIKP 358 + + LG S + D L ++ +A GD + I G Y + + + K Sbjct: 249 SKSPERAKKNGDLGYKSLNEL-DPQLGMTVMQMA-VGDVSDPIRLPDGSYAVVKMIDRKG 306 Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + F +VK + K + + + + L Sbjct: 307 GVQMPFDQVKDRAMELAKQDKINSMIPKFLEEL 339 >gi|282880884|ref|ZP_06289577.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305266|gb|EFA97333.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1] Length = 475 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 89/236 (37%), Gaps = 27/236 (11%) Query: 240 HEKEKKIEISNDELQA----EYEKNKEK-YFSPEIRTVEQLVFP------------NQKE 282 + K I++ +++ Y++ + S + V ++ ++ Sbjct: 93 DAQIKPTMITDADVEQKAHEIYQQTANRVNASGGLVKVSHILIALKQTAGEVDRRIAEQR 152 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDF 338 AD +++L KG F +LA+ + S G + + +IFS+ KKG+ Sbjct: 153 ADSVYRALCKGANFGELAKRVSDDRASASRGGELPWLERGQTLE-EFDKAIFSM-KKGEL 210 Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV--KEDYKRLEEFLA 396 + + GY I + + + F + +K +I + +++ K+ +E + Sbjct: 211 SKPVQTPAGYHIIFLKDKRSFF--PYDSLKTEILQFIEQRGIRDQLISKKIQTAIEHAGS 268 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 T D ++++ K + P + + K+ + ++ + L++ Sbjct: 269 GVTEDDILAQKRKELVAKNPQLKYLIKEYHDGLLLFEVMTREIFSKAQNNAQALNE 324 >gi|89898918|ref|YP_521389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] gi|121956453|sp|Q223E5|SURA_RHOFD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|89343655|gb|ABD67858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax ferrireducens T118] Length = 459 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 59/470 (12%), Positives = 143/470 (30%), Gaps = 84/470 (17%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + + ++ L ++Q+ V+S+ L +++L+ L++ Q Sbjct: 55 VAVVNSEPITNNEVRAALQRVLQQLAQQGNPQVDSK-----TLVRQVLERLINEKAQLQL 109 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + G+ AD + + N+ + RL +EG ++ + + T Sbjct: 110 ARESGIAADEAAIDQAEQNI----ARQNQLTVAELRRRLTQEGGVPGQFRNQLRDQILLT 165 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + R V A S + Q+ + + Sbjct: 166 RLRE---------------------------------REVEPRARVSELEIDQFLREQQS 192 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 + A + ++ +L V + ++++ + +A+ + + + V + + K Sbjct: 193 STPAVQQINLAQVLVSVPDTATPVQVTALQARAQRALARARAGEDFVTLVREFSDASDK- 251 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 LA + LG + + P ++ +LA G+ + ++ Sbjct: 252 --------------ASLA-------NGGELGLRTADRYP-PLFLEATHNLA-VGEISALV 288 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI---TKASEKVKEDYKRLEEFLALG- 398 G+ I V K + + + + + ++ ++ +A G Sbjct: 289 RSGAGFHILKVLEKKSAALPAMTVTQSRARHILLRVSPQLTESAARDKLNEFKKRVAAGQ 348 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 ++R G +P E ++ + P + Sbjct: 349 ADFAALARDHSQDG----SAAQGGDLGWANPGMFVPEFEAVMNSLT----PGQISEPLV- 399 Query: 459 PDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQL 506 S V + + + R L E V+ K E S A + Sbjct: 400 ---SRFGVHLIQLMERRQATLSPQEQREAVRAMLHEKKLDEAYISWAQDV 446 >gi|332016995|gb|EGI57794.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Acromyrmex echinatior] Length = 127 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G+KF ++A + S LG ++ + D+ Sbjct: 35 KVRHILCEKQSKILEALEKLKAGQKFNEIAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 93 Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357 F+L +PV FGY I V K Sbjct: 94 AFALPVSSLGSPVYTDPPVKTKFGYHIIMVEGKK 127 >gi|167723994|ref|ZP_02407230.1| putative rotamase [Burkholderia pseudomallei DM98] gi|167828511|ref|ZP_02459982.1| putative rotamase [Burkholderia pseudomallei 9] gi|167898574|ref|ZP_02485975.1| putative rotamase [Burkholderia pseudomallei 7894] gi|167906920|ref|ZP_02494125.1| putative rotamase [Burkholderia pseudomallei NCTC 13177] gi|167915279|ref|ZP_02502370.1| putative rotamase [Burkholderia pseudomallei 112] Length = 180 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 25 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 83 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 84 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 141 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 142 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 176 >gi|254229741|ref|ZP_04923149.1| ppic-type ppiase domain protein [Vibrio sp. Ex25] gi|262392437|ref|YP_003284291.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25] gi|151937708|gb|EDN56558.1| ppic-type ppiase domain protein [Vibrio sp. Ex25] gi|262336031|gb|ACY49826.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25] Length = 427 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 122/378 (32%), Gaps = 88/378 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + K Q G + S L +++++ L+ Sbjct: 25 DKVAVIVNDGVILQSDIETAMKTLQANARQS-GKSLPSASV----LKEQVVEKLIIDTLQ 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D R+ IA ++N+ S + + + EG++ E+ + K + Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNEQSVEQLAASVESEGLSYPEFREQIRKEI 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 + ++ V R ++ + + + +NA + Sbjct: 136 AASEARNALV-------------------RRRINILPAEVDSLAEQLSQETNATVQ---- 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I + ++K + + Sbjct: 173 -----------YKIGHIQLRFSDDKEKSAVEAE--------------------------- 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + A + L +G F ++A K+L G KE +P AD I + K Sbjct: 195 AKALAKK----LNEGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390 G G+ I + ++K TV+ EV I + A +++ E +R Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308 Query: 391 LEEFLALGTSMDEISRRE 408 ++ A + +++ + Sbjct: 309 IK---AGEATFAQLATQY 323 >gi|42521883|ref|NP_967263.1| peptidyl-prolyl cis-trans isomerase C [Bdellovibrio bacteriovorus HD100] gi|39574413|emb|CAE77917.1| peptidyl-prolyl cis-trans isomerase C [Bdellovibrio bacteriovorus HD100] Length = 90 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 ++ +Q EA++ ++LK GK F +LA+ + S LG F++ + D Sbjct: 2 KIRASHILVKHQYEAEDILRALKSGKTFEELAQRYSQCPSARVGGDLGVFAEGRM-DEVF 60 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 ++ F+L + FGY I + Sbjct: 61 EEAAFALKVNETTLHPVRTRFGYHIIRRTE 90 >gi|310639535|ref|YP_003944293.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus polymyxa SC2] gi|309244485|gb|ADO54052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus polymyxa SC2] Length = 316 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 87/248 (35%), Gaps = 19/248 (7%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 +EGI+E++++ K ++ M + + + + +++ Sbjct: 51 QEGISEEQWVAELKKRYGTNTLLQMLNR--KAVQAEAKRLGIKITQEDLQQVLEQDSKGY 108 Query: 203 PAIADPSNAVLTQWFEKYKDNY---RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 + +FE+ + + Y + + I++ E+ +E+ Sbjct: 109 DSE--------HAYFEEMQRQFGLNPVDLRNEAEYRIGLEKIATQGIQVEETEIDEYWEQ 160 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS------DISLG 313 + E++ + + + +EA+ +K+G+ F L E S + LG Sbjct: 161 HPEEFAVGKQIKLAAIYVAKAEEAETLLDRVKQGESFDMLLREHSVSGNPLGEDHSGQLG 220 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 + GD I + GY + +V +++ + Q++++ I Sbjct: 221 WLDEYDPFQPEAVMKAARELSSGDVAGPISVNDGYAVIYVQDVRLKNSPDKQQIRQQIRR 280 Query: 374 QMRITKAS 381 + + +A+ Sbjct: 281 SLALAQAA 288 >gi|146308191|ref|YP_001188656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] gi|145576392|gb|ABP85924.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina ymp] Length = 93 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 T ++ ++ + +E +++ G F QLA++ S LGSF + Sbjct: 2 ARATARHILVASEDKCNELKAAIEGGADFAQLAKDNSSCPSGRNGGDLGSFGPGQMVK-E 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A G + FGY + V++ + Sbjct: 61 FDTVVFS-APVGVVQGPVKTQFGYHLLEVTSRQ 92 >gi|86143068|ref|ZP_01061490.1| putative exported peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis MED217] gi|85830513|gb|EAQ48972.1| putative exported peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis MED217] Length = 481 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 53/385 (13%), Positives = 129/385 (33%), Gaps = 47/385 (12%) Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP-------- 208 + L + V G + + L++ + Y + +D +++N + + Sbjct: 79 ESLKQQKVEGQDLSTCSVMDKLMED--KLYAHHAVIDSVMINEEQIRSYTQQQIDYFVNQ 136 Query: 209 --SNAVLTQWFEKYKDNYRAPE----YKRISYILFDVHEKEKKIEISNDELQAEY----E 258 S + +++ K K + E + ++IE++ +E+++ Y E Sbjct: 137 LGSEEKVLKFYRKEKMSDLKKELLELNRNQELAKAMQQNIVEEIEVTPEEIRSYYKELEE 196 Query: 259 KNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLA----EEQGK 305 ++ EI ++ + Q+E + L + G F A E++ Sbjct: 197 DGLPQFGVELEISKIQIIPEVPQEEKQKVIDQLNGYRNDILENGSSFATKAVLWSEDEST 256 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 + ++ D FSL ++G+ + FGY I V I+ Sbjct: 257 RGDGGLIRDVDRKSQFVKEFRDVAFSL-QEGEVSKPFETEFGYHIIKVEKIRGQKIDLRH 315 Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKD 424 ++ A +K+++ KR+E+ + + E S ++ S +++ +D Sbjct: 316 ILRIPKVTSAAEAAAKDKIEKIRKRIEDGEITFAEAAKEFSDEKETASDGGIMINPTTQD 375 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR------- 477 + P + + + ++ ++ Y + + I + Sbjct: 376 RMFELKNLPPELYPKVQNLKEGEVSIAFNNPTRTGKTRYEIYTVSDRIEEHEADFAIDYV 435 Query: 478 -----KLEEVLTDVKKDWKTVKTAE 497 L+ + W+ K AE Sbjct: 436 KIKNFALQAKRIKAIEKWQDEKIAE 460 >gi|152999582|ref|YP_001365263.1| SurA domain-containing protein [Shewanella baltica OS185] gi|160874201|ref|YP_001553517.1| SurA domain-containing protein [Shewanella baltica OS195] gi|217974467|ref|YP_002359218.1| SurA domain-containing protein [Shewanella baltica OS223] gi|151364200|gb|ABS07200.1| SurA domain protein [Shewanella baltica OS185] gi|160859723|gb|ABX48257.1| SurA domain [Shewanella baltica OS195] gi|217499602|gb|ACK47795.1| SurA domain protein [Shewanella baltica OS223] gi|315266433|gb|ADT93286.1| SurA domain [Shewanella baltica OS678] Length = 434 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 114/371 (30%), Gaps = 71/371 (19%) Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 N L ++++ L+ Q + IGL ++ I K S Sbjct: 59 NQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVA 114 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 ++ EG++ +Y R + G + +R + R Sbjct: 115 QMQQKIESEGLSFSQY---------REQLREEITLG---------EIQRIQVQRR----- 151 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 S +T + ++ +I +IL DV + Sbjct: 152 ----------IQVSPQEITSLVKLIQEQGMKDVEYQIGHILIDVPNNPTSEQ-------- 193 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + + K A+ + LK G+ F + A + G + Sbjct: 194 --------------------LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIW 233 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IAN 373 I + +L + + AK GD I G+ I + + + T +EV+ I Sbjct: 234 DYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILL 293 Query: 374 QMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + + ++ K ++ L++ + ++++R+ S D G+ + Sbjct: 294 KPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIY 350 Query: 433 IPYKEQLLFRV 443 +P Q L + Sbjct: 351 VPEFAQTLNSL 361 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 268 EIRTVEQLVFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS--- 314 E ++ ++ A + ++ G+ KF LA + + + G Sbjct: 284 EEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELG 343 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 +++ I A ++ SL K + + G+ I + + + Sbjct: 344 WAEPSIYVPEFAQTLNSL-KTDQISEPFRTTHGWHITQLEERRKTDATD 391 >gi|297568758|ref|YP_003690102.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus AHT2] gi|296924673|gb|ADH85483.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus AHT2] Length = 296 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 79/187 (42%), Gaps = 6/187 (3%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + + E K++ ++LQ Y N E++ + E + ++V + +EA + Sbjct: 107 RTLLVNTLIEQELAPKVQFGEEDLQEYYRNNPEEFMTREKVRLSRIVVGSAEEAQQVRAR 166 Query: 290 LKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH-GS 345 L + F +A++ ++ + LG ++ + + A F++ GD + Sbjct: 167 LLADEDFAAVAQDLSLEQETAAGGDLGFVERDALSERE-AHLAFNVLGLGDISSPQELAE 225 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 +V+ +++++ TV ++E+K +A +M ++ L++ + S + I Sbjct: 226 NRFVVIKLTDLQ-GETVPYEEIKNLLAQRMETFGRKAAFEDFVATLKQDRKIEFSAEAIQ 284 Query: 406 RREKIVS 412 + + Sbjct: 285 QLMQEAG 291 >gi|311104077|ref|YP_003976930.1| chaperone surA [Achromobacter xylosoxidans A8] gi|310758766|gb|ADP14215.1| chaperone surA [Achromobacter xylosoxidans A8] Length = 532 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 38/319 (11%), Positives = 81/319 (25%), Gaps = 45/319 (14%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + ++ + G + + G V ++ L ++L L+ Sbjct: 64 DGIAAVVDKDVITLRELRDASLRISGELKSR-GIQVPDDQ----TLQHQVLQRLIMERVQ 118 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +G+ D +V I NK + + + G + Y + Sbjct: 119 RHEADRLGIRVDDAQVDQAIQTIAA----RNKITVAQLRQEIEKSGTHWDGYRKSLRDEI 174 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 + + S+ +D + R+ + Q Sbjct: 175 RTDRLRQRAVDSTIVISDAEVDAF--LKDQRRNPAFGAAPQAAPQPQPQAQPQPEPQ--- 229 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 + + + SPE + Sbjct: 230 ----------QAAAPSGPMLYALAQILVRVPEG-------------SSPEQ------LAA 260 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGD 337 +K+A+ K+G F LA + G + L S +KG Sbjct: 261 LRKKAEGLLAQAKRGDDFASLAAAASDGPEALQGGVMGVRPLDGWPDLFVQAVSNLQKGQ 320 Query: 338 FTPVIHGSFGYVIAHVSNI 356 + +I G+ I V + Sbjct: 321 VSSLIQSGNGFHIIKVMDR 339 >gi|304405851|ref|ZP_07387509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304345094|gb|EFM10930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 403 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 41/273 (15%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY-----ILFDVHEKEKKI 246 V Y L +R ++ + + ++Y + + + + DV K+I Sbjct: 136 VGYKTLYDRSSEDDKKSADTEVATFIKQYNEQLTSNAEMKKTVDAAGLTEKDVSGFYKQI 195 Query: 247 ---------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------------KE 282 +S+ +++AEYEKNK Y + +V ++ K Sbjct: 196 VTIRKYWERNVSDADIKAEYEKNKGGYN---LVSVRHILISTVDPSTGEEKRKDEEALKI 252 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTP 340 A E L KG + LA + G + P+ +A+ G Sbjct: 253 AKEVKAKLDKGGDWKALANQYSDDEGSKGNGGLYENASPNSWVAEFKEAAITQPVGTVGE 312 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR----LEEFLA 396 + +GY + V + F+E+ +D+ Q++ + K+ + + L E + Sbjct: 313 PVKSQYGYHVMKVEKRES---KKFEELSEDVKTQVKTGAINTKMGDFMTKELPTLIEKIN 369 Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 L + + D K + Sbjct: 370 LPKAETPAAGTGTDAGAGTGATDSTEKKDEATT 402 >gi|284008562|emb|CBA75119.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase) [Arsenophonus nasoniae] Length = 433 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 112/365 (30%), Gaps = 61/365 (16%) Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103 V V S + + ++ G + E A L +IL+ L+ + Q Sbjct: 31 AIVNDGVVLQSDVDGMLD-IVRINARNAGQQIPDENA----LRHQILERLIIDKIIMQIA 85 Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 E + ++ + IA N + RL+ +GIN + Y + + + Sbjct: 86 EKMQIQIPDQAIDATIANIAA----QNGLTIGQLQQRLSMDGINLQNYRSDVRREMMIAE 141 Query: 164 VVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEK-Y 220 V + +D D + L++ +P +P+N + Sbjct: 142 VRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLSHILIPLPENPTNTQSQLAMDTVN 201 Query: 221 KDNYRAPE-----YKRISYILFDVHEKEKKIEISN-DELQAEYEKNKEKYFSPE------ 268 K + + I+Y K ++ S +EL + + + + Sbjct: 202 KIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELPTVFAQQIQHAKKGDIIGPIR 261 Query: 269 -----------------------IRTVEQLVFP---------NQKEADEAFQSLKKGK-K 295 ++ + + Q +K G+ Sbjct: 262 SSVGFHILKLNDIQRGNMPISVTEVKARHILIKLSPIMNNEQAHAKIQQIAQQIKTGQIT 321 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 F + A++ + G +P D + D + L+K G+ + IH SFG+ + Sbjct: 322 FAEAAKKYSQDPGSALRGGELGWNMPNIYDPAFRDGLMRLSK-GETSQPIHSSFGWHLIQ 380 Query: 353 VSNIK 357 + + + Sbjct: 381 LEDTR 385 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 22/208 (10%) Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP- 278 NYR+ + + +E ++I I E+ + + + + ++ P Sbjct: 125 NLQNYRSDVRREMMIAEVRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLSHILIPL 184 Query: 279 -----------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327 ++ LK+G F +LA + + G + ++ Sbjct: 185 PENPTNTQSQLAMDTVNKIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELP--- 241 Query: 328 SIFSL----AKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD-IANQMRITKAS 381 ++F+ AKKGD I S G+ I +++I+ S EVK I ++ + Sbjct: 242 TVFAQQIQHAKKGDIIGPIRSSVGFHILKLNDIQRGNMPISVTEVKARHILIKLSPIMNN 301 Query: 382 EKVKEDYKRLEEFLALGT-SMDEISRRE 408 E+ +++ + + G + E +++ Sbjct: 302 EQAHAKIQQIAQQIKTGQITFAEAAKKY 329 >gi|268319932|ref|YP_003293588.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785] gi|262398307|emb|CAX67321.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785] Length = 298 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 17/228 (7%) Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229 G + S + ++ IV + D + + + + KYK Y + Sbjct: 36 GKITESQYYDKMKESQAGQSTLASMIVSDALESQYGKDVTQKQVDKEYNKYKKQYGSQFD 95 Query: 230 KRISYILFDVHEKEKKIE---ISNDELQA------EYEKNKEKYFSPEIRTVEQLVFPNQ 280 + + ++ ++ L+ EK K + PE+ TV+ ++ + Sbjct: 96 SVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKSYQPEV-TVQHILVSKK 154 Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSF-SKEYIPDVSLADSIFSLAKK 335 A++ + L+ G F +LA++ L +F S + D S + F L Sbjct: 155 STAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTG 214 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 T + +GY + + IK + +E KK I NQ+ + + ++ Sbjct: 215 EITTTPVKTQYGYHVIKM--IKHPAKGTLKEHKKQIDNQIYQSMSEDQ 260 Score = 44.2 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMV 560 + V++ ++G +F+ + K T N + D+ + + F + Sbjct: 157 AEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEI 216 Query: 561 KCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSV 616 P++ Y V K+ +K + K + + + Q M++D ++ SVIA + + V Sbjct: 217 TTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRADV 276 Query: 617 TVHDNLIQRYL 627 ++ D ++ L Sbjct: 277 SIKDKDLKNVL 287 >gi|289805043|ref|ZP_06535672.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 91 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 35/91 (38%) Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 ++ + + + + G+ +Y L+ ++ G D+ + R V Sbjct: 1 NNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVR 60 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 V++ + A ++ ++ ++++ K + Sbjct: 61 EAVIDVNALAAKQQVTDQEVSSYYDQNKVRF 91 >gi|167923109|ref|ZP_02510200.1| putative rotamase [Burkholderia pseudomallei BCC215] Length = 190 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 35 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSVLTVPGEADALRLRNQLIQGASFGEL 93 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 94 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 151 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 152 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 186 >gi|163848456|ref|YP_001636500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus aurantiacus J-10-fl] gi|222526384|ref|YP_002570855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp. Y-400-fl] gi|163669745|gb|ABY36111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus aurantiacus J-10-fl] gi|222450263|gb|ACM54529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp. Y-400-fl] Length = 321 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 22/209 (10%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 +D ++ + A A + E+ + + + L D + +++ Sbjct: 94 IDVELVVQAALAEGATVDEATIDSQVEQLRLAQAGGDEAQFLTFLQDNNIADEEELRRLL 153 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKKGKKFIQLAE-- 301 E+ K+ + E ++ + A+ L+ G F LA Sbjct: 154 RRDYLIEQMLLKHTTAEQVRARHILVAATPEEAESRKATAEAILAELQGGADFAALARAR 213 Query: 302 --EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 + G + LG + + +++FS+ + G+ ++ FG+ I V+ Sbjct: 214 SDDPGSAAQGGDLGWAPRGVYVEP-FEEAVFSM-QPGEL-RLVQTDFGWHIIEVTE--GP 268 Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDY 388 SF + + E + Sbjct: 269 EVRSFTD-----RALLETQAGQEAFSATF 292 >gi|241662025|ref|YP_002980385.1| SurA domain-containing protein [Ralstonia pickettii 12D] gi|240864052|gb|ACS61713.1| SurA domain protein [Ralstonia pickettii 12D] Length = 500 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 53/410 (12%), Positives = 111/410 (27%), Gaps = 69/410 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + +N + + RA +G ++L+ L+ Sbjct: 92 DEVVAVVNTDVITRRELLNRADLVERTFRAQNRPL--PPRADLLG---EVLEQLILERVQ 146 Query: 100 DQFIEDIGLEADHGRVWGEI--------ARSPLFHGK--DNKFSHDVFVSRLAR----EG 145 Q ++ G+ V + P K D ++D + L + Sbjct: 147 AQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEILLAR 206 Query: 146 INEKE-------YIDHYTKMLSRT---------------DVVGMFVGGMRPSNLLLDQAK 183 + E+E Y L++ ++ G + + K Sbjct: 207 LREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKK 266 Query: 184 R---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 D+ L + A L + R P + + Sbjct: 267 AEGLLKQAQGGADFAKLARDNSGAQDAAQGGEL-----GLRPIGRLPAVFANAVVDMKAG 321 Query: 241 EKEKKIEISND--ELQAEYEKNK---EKYFSPEIRTVEQLVFPNQK--EADEAFQSLKK- 292 + ++ S + +K + V ++ AD+A + L Sbjct: 322 QVASQVVESPAGYHVIKLLDKRAPGTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGL 381 Query: 293 ------GKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 G F A + G + + LG S + ++ L K GD + + Sbjct: 382 RDRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLV-PEFEQAMNQL-KPGDVSQPVQ 439 Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 FG + V + + S + + +R K ++ + L + Sbjct: 440 SQFGVHLIQVEGRREAEV-SGDRQRDYARSVIREQKVQAAYEDWLRELRD 488 Score = 61.9 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 102/307 (33%), Gaps = 50/307 (16%) Query: 138 VSRLAREGINEKEYIDHYT---------------KMLSRTDVVGMFVGGMRPSNLLLDQA 182 L R + E+ + +L R G+R S+ +D+A Sbjct: 106 RELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDADVDRA 165 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 + ++ L ++ A ++KY+D+ R I E Sbjct: 166 VESVAQRNNLSVPQLKSKLKDAGMT---------YDKYRDDLRQ----EILLARLREREV 212 Query: 243 EKKIEISNDELQAEYEKNKEKYF--SPEIRTVEQLVFPNQKEADE------------AFQ 288 + K+++ + E+ + + V Q++ P + A + + Sbjct: 213 DSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEKAAARKKAEGLLK 272 Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 + G F +LA + + LG +P V A+++ + + V+ Sbjct: 273 QAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAV-FANAVVDMKAGQVASQVVESP 331 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRI---TKASEKVKEDYKRLEEFLALGTSM 401 GY + + + + T +V++ + + + T +++ + L + + G Sbjct: 332 AGYHVIKLLDKRAPGTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDF 391 Query: 402 DEISRRE 408 + +RR Sbjct: 392 GDAARRY 398 >gi|51594518|ref|YP_068709.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP 32953] gi|108806143|ref|YP_650059.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Antiqua] gi|108810256|ref|YP_646023.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Nepal516] gi|145600740|ref|YP_001164816.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Pestoides F] gi|153947180|ref|YP_001399170.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pseudotuberculosis IP 31758] gi|153997073|ref|ZP_02022206.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CA88-4125] gi|162419617|ref|YP_001605102.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Angola] gi|165926365|ref|ZP_02222197.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Orientalis str. F1991016] gi|165939696|ref|ZP_02228239.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Orientalis str. IP275] gi|166009691|ref|ZP_02230589.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Antiqua str. E1979001] gi|166213502|ref|ZP_02239537.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Antiqua str. B42003004] gi|167402058|ref|ZP_02307537.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421055|ref|ZP_02312808.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425941|ref|ZP_02317694.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468459|ref|ZP_02333163.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis FV-1] gi|218930874|ref|YP_002348749.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CO92] gi|229837207|ref|ZP_04457372.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis Pestoides A] gi|229839569|ref|ZP_04459728.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900131|ref|ZP_04515268.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis biovar Orientalis str. India 195] gi|229900422|ref|ZP_04515551.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis Nepal516] gi|270488780|ref|ZP_06205854.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|51587800|emb|CAH19402.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP 32953] gi|108773904|gb|ABG16423.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Nepal516] gi|108778056|gb|ABG12114.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Antiqua] gi|115349485|emb|CAL22459.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CO92] gi|145212436|gb|ABP41843.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Pestoides F] gi|149289379|gb|EDM39457.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CA88-4125] gi|152958675|gb|ABS46136.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pseudotuberculosis IP 31758] gi|162352432|gb|ABX86380.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Angola] gi|165912386|gb|EDR31020.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Orientalis str. IP275] gi|165921889|gb|EDR39086.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Orientalis str. F1991016] gi|165991613|gb|EDR43914.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Antiqua str. E1979001] gi|166205175|gb|EDR49655.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Antiqua str. B42003004] gi|166961184|gb|EDR57205.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048532|gb|EDR59940.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055089|gb|EDR64888.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682441|gb|EEO78528.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis Nepal516] gi|229686911|gb|EEO78990.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis biovar Orientalis str. India 195] gi|229695935|gb|EEO85982.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706150|gb|EEO92159.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis Pestoides A] gi|270337284|gb|EFA48061.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27] gi|320013526|gb|ADV97097.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 93 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 9 HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 68 SCELLQP---YGPVKTQFGYHIIKV 89 >gi|123440559|ref|YP_001004553.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238750649|ref|ZP_04612148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia rohdei ATCC 43380] gi|238759819|ref|ZP_04620976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia aldovae ATCC 35236] gi|332159789|ref|YP_004296366.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087520|emb|CAL10301.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238701962|gb|EEP94522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia aldovae ATCC 35236] gi|238711039|gb|EEQ03258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia rohdei ATCC 43380] gi|318607672|emb|CBY29170.1| peptidyl-prolyl cis-trans isomerase ppiC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664019|gb|ADZ40663.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859832|emb|CBX70164.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica W22703] Length = 93 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K+A++ L G F +LA++ S LG F+K + + ++F Sbjct: 9 HILVDDEKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 68 SCELLQP---YGPVKTQFGYHIIKV 89 >gi|315924902|ref|ZP_07921119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621801|gb|EFV01765.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 509 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 85/227 (37%), Gaps = 28/227 (12%) Query: 195 IVLNNRHVPAIAD----------PSNAVLTQWFEKYK------DNYRAPEYKRISYILFD 238 I +++ V A P ++ L + + Y Y+ E K + Sbjct: 258 IKISSDAVAAQQKLLNMTLKMYFPKDSTLDSYLQNYGMTAAIFRKYQKEEAKGRAAQAAI 317 Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS---LKKGKK 295 K +++SN +++ YE ++ Y P+ + ++ + A + + +K Sbjct: 318 RSALAKDVKVSNQDVKEYYESHESTYN-PKTVSACHILTKDPVLAKKIAKEAKGIKTKAA 376 Query: 296 FIQLAEEQGKS-----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 F +L + L + LG+F K + + + F+ +K + + GY + Sbjct: 377 FKKLMRKYSTKTNKKVLESMDLGAF-KSARMVPAFSKAAFNASKNTAV-GPVKTTNGYHV 434 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 V + S++ K I ++ ++ + ++ K L++ A Sbjct: 435 IFVYDKTQKKD-SWKNHKAAITQSIQQNESKKAYQKQIKDLQDVKAD 480 >gi|323157883|gb|EFZ43986.1| chaperone surA [Escherichia coli EPECa14] Length = 356 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 94/317 (29%), Gaps = 75/317 (23%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 45 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 96 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA K N + D SRLA +G+N Y + K + ++V Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 143 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 V + ++ + A +S+I Sbjct: 144 ------------------------NEVRRRITILPQEVESLAQQVGNQNDASTELNLSHI 179 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L + E +++ E +A + G Sbjct: 180 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGAD 211 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +LA ++ G I + + S AKKGD I G+ I V+ Sbjct: 212 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 271 Query: 355 NIK-PSFTVSFQEVKKD 370 +++ S +S EV Sbjct: 272 DLRGESKNISVTEVHAR 288 >gi|308480673|ref|XP_003102543.1| hypothetical protein CRE_04023 [Caenorhabditis remanei] gi|308261275|gb|EFP05228.1| hypothetical protein CRE_04023 [Caenorhabditis remanei] Length = 119 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSF 315 E+ K++ V ++ Q +A EA + LK G KF ++A + + S LG Sbjct: 14 EEPKKEAKGGTAVKVRHILCEKQGKALEAIEKLKAGMKFNEVASQYSEDKARSGGDLGWM 73 Query: 316 SKEYIPDVSLADSIFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 ++ + D+ F+L+ K P + FGY + V K Sbjct: 74 TRGSMVGP-FQDAAFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 119 >gi|225686140|ref|YP_002734112.1| chaperone SurA [Brucella melitensis ATCC 23457] gi|254706164|ref|ZP_05167992.1| Chaperone surA precursor [Brucella pinnipedialis M163/99/10] gi|254711538|ref|ZP_05173349.1| Chaperone surA precursor [Brucella pinnipedialis B2/94] gi|256015078|ref|YP_003105087.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM 4915] gi|256029827|ref|ZP_05443441.1| Chaperone surA precursor [Brucella pinnipedialis M292/94/1] gi|256059473|ref|ZP_05449675.1| Chaperone surA precursor [Brucella neotomae 5K33] gi|256111792|ref|ZP_05452763.1| Chaperone surA precursor [Brucella melitensis bv. 3 str. Ether] gi|256157997|ref|ZP_05455915.1| Chaperone surA precursor [Brucella ceti M490/95/1] gi|256253044|ref|ZP_05458580.1| Chaperone surA precursor [Brucella ceti B1/94] gi|256262736|ref|ZP_05465268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 2 str. 63/9] gi|261220140|ref|ZP_05934421.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94] gi|261313606|ref|ZP_05952803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M163/99/10] gi|261319154|ref|ZP_05958351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis B2/94] gi|261323445|ref|ZP_05962642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae 5K33] gi|265986843|ref|ZP_06099400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M292/94/1] gi|265993257|ref|ZP_06105814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 3 str. Ether] gi|265996512|ref|ZP_06109069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M490/95/1] gi|225642245|gb|ACO02158.1| Chaperone surA precursor [Brucella melitensis ATCC 23457] gi|255997738|gb|ACU49425.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM 4915] gi|260918724|gb|EEX85377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94] gi|261298377|gb|EEY01874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis B2/94] gi|261299425|gb|EEY02922.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae 5K33] gi|261302632|gb|EEY06129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M163/99/10] gi|262550809|gb|EEZ06970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M490/95/1] gi|262764127|gb|EEZ10159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 3 str. Ether] gi|263092541|gb|EEZ16776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 2 str. 63/9] gi|264659040|gb|EEZ29301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella pinnipedialis M292/94/1] gi|326410475|gb|ADZ67539.1| chaperone SurA [Brucella melitensis M28] gi|326553767|gb|ADZ88406.1| chaperone SurA [Brucella melitensis M5-90] Length = 311 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|289811836|ref|ZP_06542465.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 91 Score = 75.0 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++ Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59 Query: 61 KQELGMISQKIGFV---VNSERARSVGLDKKI 89 E + Q++G + + L +++ Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQV 91 >gi|296273396|ref|YP_003656027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter nitrofigilis DSM 7299] gi|296097570|gb|ADG93520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter nitrofigilis DSM 7299] Length = 297 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294 F + +K +++ S+ EL+ Y + KY +P + +V A E + L+ K Sbjct: 126 FDFLLTQKAEQLLPSDKELEKYYNDRRYKYDTPAQIELLSIVVEKLSLAKEIIKKLQNAK 185 Query: 295 K----FIQLAEEQGKSLSDISLGSFSKEYIPDVSLA-DSIFSLAKKGDFT-PVIHGSFGY 348 F LA++ + + + G F K + ++ I K+G FT I FGY Sbjct: 186 DILQEFSILAKKYSLAPTAKNSGYFGKIPLSVLNSELSPILKDKKRGFFTNKPIKTEFGY 245 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 I ++ N P + +F+ VK + + K L+E Sbjct: 246 EIFYILNDIPEYNSTFEGVKDKVKEEYVKKTVKTWAINKIKELKEK 291 >gi|226309691|ref|YP_002769585.1| foldase protein PrsA precursor [Brevibacillus brevis NBRC 100599] gi|226092639|dbj|BAH41081.1| putative foldase protein PrsA precursor [Brevibacillus brevis NBRC 100599] Length = 355 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 18/162 (11%) Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------AF 287 L + K I + L+ Y++ + + + +V ++ +K E Sbjct: 178 LINQSINVMKKNIDDATLKQTYDQMDKASRT--VASVRHILISTEKRTPEEALKISNDLE 235 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344 LKKG+ F +LA E G + ++ + K G+ P + Sbjct: 236 ARLKKGEDFAKLATEFTDDPGSKQSGGLYENADVTQWVPEFKEASLT-QKVGEVGPPVKT 294 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 +FGY I V N K +F E+K+ + + KA + + Sbjct: 295 NFGYHIIKVENRKE---KTFDEMKEQLRAS-SLEKAYDTFAK 332 >gi|317053465|ref|YP_004119232.1| nitrogen fixation protein NifM [Pantoea sp. At-9b] gi|255761142|gb|ACU32741.1| nitrogen fixation cis-trans peptidyl prolyl isomerase [Pantoea sp. At-9b] gi|316953204|gb|ADU72676.1| nitrogen fixation protein NifM [Pantoea sp. At-9b] Length = 261 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 24/240 (10%) Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA----VLTQWFEKYKDNYRAPEYK 230 S L + R + R ++Y V I + A L+ + ++ A E Sbjct: 26 SVSQLAEFNRLWQRQRQMEYAVAGATGEELIPETCLANMTTSLSPLLSTH--DFSAAERL 83 Query: 231 RI----SYILFDVHEKEKKIEISND-ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 I + + + ++ + +D ++ A Y +++ ++ PE R L+ ++ Sbjct: 84 SIIQHHTRMEIQLARVAEQAPVPDDLQVLAWYRRHQGQFMRPEQRLCWHLLLTTDQDGPA 143 Query: 286 AFQSLK--------KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 + ++ + F LA+ +L +G + + L + +F++ K Sbjct: 144 VHRQMQQLRLQITNNRQAFSSLAQRWSHCPSALEGGRMGWIGRGLLY-PELEEVLFAM-K 201 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + I G+ + I+P + + + + + + ++ K+L E Sbjct: 202 PNAVSQPIATQLGWHLLWCEMIRPPAPMEQEAALTRVRSLLTRQNQQQWQRQWLKQLLEK 261 >gi|237809084|ref|YP_002893524.1| nitrogen fixation protein NifM [Tolumonas auensis DSM 9187] gi|237501345|gb|ACQ93938.1| nitrogen fixation protein NifM [Tolumonas auensis DSM 9187] Length = 279 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 39/254 (15%) Query: 171 GMRPSNLLLDQAKRF--YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 G P++L D+ + E++ + + A A L ++ K Y E Sbjct: 18 GKTPADLSADEQIQLEKMLEHQLAMEARILDYAAQAGISVQAADLNAALDEVKKAYADEE 77 Query: 229 YKRISYILFDVH---------------EKEKKI-----EISNDELQAEYEKNKEKYFSPE 268 ++S + + K+ ++ + +A Y + ++ PE Sbjct: 78 VWKVSMAAVKLDLPSLKEALRRELLVSQVMDKVVENIKPLTQEAAKAWYLDHPRQFLQPE 137 Query: 269 IRTVEQLVFPNQKEADEAFQS-------------LKKGKKFIQLAEEQGKSLSDISLG-- 313 R ++ + ++ ++ KF LA + + ++ G Sbjct: 138 RRMARHILITIDDANPDNYEETSYARLLDIRGQLIQSPGKFAALAMRYSECPTAVNEGKI 197 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 K + L ++F L ++G F+ ++ G+ + I P+ + E I Sbjct: 198 GLVKAGLLYPELDAALFQLPERG-FSNILRSPMGFHLLWCEKIHPAVPMPLDEAVPKIIA 256 Query: 374 QMRITKASEKVKED 387 ++ A +K+++ Sbjct: 257 A-QLDHAKKKLQKQ 269 >gi|237508070|ref|ZP_04520785.1| peptidylprolyl isomerase [Burkholderia pseudomallei MSHR346] gi|235000275|gb|EEP49699.1| peptidylprolyl isomerase [Burkholderia pseudomallei MSHR346] Length = 240 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 85 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 143 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 144 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 201 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 202 RDIVAPSLDQIREQLIELARVDKFERHLCELRSAV 236 >gi|61228635|sp|P0A3Y9|NIFM_KLEPN RecName: Full=Protein nifM gi|61228636|sp|P0A3Z0|NIFM_KLEOX RecName: Full=Protein nifM gi|43835|emb|CAA31679.1| unnamed protein product [Klebsiella pneumoniae] gi|43886|emb|CAA29313.1| nifM (AA 1-266) [Klebsiella pneumoniae] gi|149250|gb|AAA25105.1| nifM [Klebsiella pneumoniae] gi|225920|prf||1403297C nifM gene Length = 266 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 83/247 (33%), Gaps = 31/247 (12%) Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHV 202 +N + SR + + ++ + E V + + + Sbjct: 1 MNPWQRFARQRLARSRWNRDPAALDPADTPAFEQAWQRQCHMEQTIVARVPEGDIPAALL 60 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRI----SYILFDVHEKEKKIEISN-DELQAEY 257 IA A L W ++ ++ PE I + + + ++ + +QA Y Sbjct: 61 ENIA----ASLAIWLDE--GDFAPPERAAIVRHHARLELAFADIARQAPQPDLSTVQAWY 114 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL--------KKGKKFIQLAEEQG---KS 306 +++ ++ PE R L+ + + Q + F LA+ + Sbjct: 115 LRHQTQFMRPEQRLTRHLLLTVDNDREAVHQRILGLYRQINASRDAFAPLAQRHSHCPSA 174 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF----TV 362 L + LG S+ + L ++FSLA+ + I G+ + I+P+ Sbjct: 175 LEEGRLGWISRGLLY-PQLETALFSLAEN-ALSLPIASELGWHLLWCEAIRPAAPMEPQQ 232 Query: 363 SFQEVKK 369 + + + Sbjct: 233 ALESARD 239 >gi|307297459|ref|ZP_07577265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916719|gb|EFN47101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales bacterium mesG1.Ag.4.2] Length = 546 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 44/366 (12%), Positives = 92/366 (25%), Gaps = 98/366 (26%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK---- 70 K L++L F + + + ++ + + + Sbjct: 3 KFLLILLAAFFSLTLIGAEYAVRITKGGEAVSNEFWITREEIEQAFSATVANAASQGIIL 62 Query: 71 ---IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 GL I+ +V +D F + L + E Sbjct: 63 DPYFDSYFTPSEL---GLKTMIIPYIVDEKLIDYFAWESNLIPSEEEIDAETDSM----- 114 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 +++ S + + G M F Sbjct: 115 ------MEMYTS-------SPDMVEQ-----------IEAIYGSM----------DAFRS 140 Query: 188 ENRSVDYIVLNNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 E R+ L V P ++ L +FE++K Sbjct: 141 EIRNYVSDALKAELVQESVAPLNDDALAAYFEEFKT------------------------ 176 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAE---- 301 E++ ++ E ++ + A E + G+ F + A Sbjct: 177 -----EIKNQF----------ETIRARHILVTEEATATELMDRINSGEITFAEAALQFSI 221 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 + + + LGS + ++I + A G+ + FGY + V Sbjct: 222 DSSTAANGGELGSIVRGQTV-PEFEEAILA-APIGELYGPVQSEFGYHLIIVEERNEIN- 278 Query: 362 VSFQEV 367 S ++V Sbjct: 279 -SLEDV 283 >gi|291613281|ref|YP_003523438.1| nitrogen fixation protein NifM [Sideroxydans lithotrophicus ES-1] gi|291583393|gb|ADE11051.1| nitrogen fixation protein NifM [Sideroxydans lithotrophicus ES-1] Length = 282 Score = 74.6 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 63/176 (35%), Gaps = 18/176 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF---- 277 ++ A + + + +S ++ Y+ + E++ PE R ++ Sbjct: 95 ASFAAALERELKVDAIMEKVGTRAEGVSEMDVDLYYQYHPEQFRRPETRLARHILITINE 154 Query: 278 ----PNQKEADE----AFQSLKK-GKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSL 325 + EA + L K ++F + A + +L LG + + L Sbjct: 155 SIAENTRAEAGKRIAVIQARLAKEPQRFEEQALKHSECPTALDGGKLGDLPRGKLF-PEL 213 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 ++F L K G+ + V+ G+ + I + + + + K+ I + + Sbjct: 214 DKALFEL-KAGEVSGVLESELGFHVLRCDAITEANVLGYDQAKQHIRKLLEQKRKR 268 >gi|332283513|ref|YP_004415424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pusillimonas sp. T7-7] gi|330427466|gb|AEC18800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pusillimonas sp. T7-7] Length = 340 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + + + S +ELQA YE NK ++ +P V Q+ + EA Sbjct: 142 ERQVVLQTYLESVSQVPAAYPSQEELQAAYEANKAQFTTPAQYRVSQIFLVAPYQDAEAV 201 Query: 288 QSLKK------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLA 333 ++K F L +E + + + G + + + + + Sbjct: 202 AKMRKQAGELVKKARADKADFAALVKEHSQDEATAARGGDTGWAPLQQLVPEIRTSVAAL 261 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 KG + I G+ I + + + T +V++ + +R + S K + L + Sbjct: 262 DKGAVSEPIQSQAGFHILKLVDQRAPVTPELAQVQEQLREALRRQRKSTVAKAYLEGLVD 321 Query: 394 F 394 Sbjct: 322 A 322 >gi|282856786|ref|ZP_06266047.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens W5455] gi|282585409|gb|EFB90716.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens W5455] Length = 368 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 47/400 (11%), Positives = 117/400 (29%), Gaps = 91/400 (22%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW----GLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 L +R + W+ +F+V+ G SD+ +G V V +++ S Sbjct: 4 LTALRTQIK-WILALFIVIFTASVGFMYGTGGSSDSDNQRTGDFVVAKVNGEELRISQL- 61 Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117 ++ L ++ G S++ + + K + D +VS + + + + A V Sbjct: 62 ---QEHLRSFVERNGIRDLSDK-QMPLIYKAVFDEMVSNRAVIDEVARLKISAPADDVDR 117 Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177 ++ ++ + + F+ L +G + ++ + L+ ++ GG+ Sbjct: 118 QLKEV-----ENQYVTKEAFMQTLKNQGSSLEQVKAEIARQLAINKMLEDVSGGVV---- 168 Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 S+ + ++ + N+ P ++ Sbjct: 169 ------------------------------VSDDEIKTLYDALRGNFTLPAGIEADFVQL 198 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 +++ AD+ + +K K + Sbjct: 199 ----------------------------------------KSKEAADKFAEEVKADKDWD 218 Query: 298 QLAEEQGKSLSDISLGSF-SKEYIPDVSLADSIFSLAKKGDFTPVIH-GSFGYVIAHVSN 355 + + + + ++ S G+ + I S Y + H Sbjct: 219 KALTIVSADVVQATSNDVHERIAAMEMVGKLEPISALNDGEISAPIEITSQDYFVVHRIK 278 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 EV I + +K E + K L + + Sbjct: 279 AVSEDVRPLSEVSDGIKTMLLQSKKVEAQRNYIKGLTDKM 318 >gi|24375136|ref|NP_719179.1| survival protein surA [Shewanella oneidensis MR-1] gi|81744686|sp|Q8EB95|SURA_SHEON RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|24349906|gb|AAN56623.1|AE015799_10 survival protein surA [Shewanella oneidensis MR-1] Length = 434 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 121/383 (31%), Gaps = 73/383 (19%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N L ++++ L+ Q + IGL ++ I K Sbjct: 56 KAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189 + ++A EGI+ +Y + + ++ ++ ++ S + + E Sbjct: 112 TVAQMQQKIASEGISFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQ---WFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + V+Y + + + +P++ L + ++ E R + I K + Sbjct: 172 KDVEY-QIGHILIDVPNNPTSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEG 230 Query: 247 EISN----DELQAEYEK--------------------------NKEKYFSPEIRTV--EQ 274 I + +E+ + + + + EI V Sbjct: 231 GIWDYMNINEMPTLFAEVINGAKKGDIIGPIKTGAGFHIIKIMDARGLQTKEIEEVRARH 290 Query: 275 LVFP-----NQKEADEAFQ----SLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++ A + ++ G+ KF LA + + + G +++ I Sbjct: 291 ILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIY 350 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 A ++ SL+ + + G+ I + + K D +Q +A Sbjct: 351 VPEFAQTLNSLS-PDQISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAH 399 Query: 382 EKV------KEDYKRLEEFLALG 398 + + +E L+E A Sbjct: 400 QLIFRRKFNEELQNWLDEMRADA 422 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 31/303 (10%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQA + + + + S Sbjct: 75 RLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVAQMQQKIASEGISFS------ 128 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 YR + I+ + +++I++S E+ + +E+ + + Sbjct: 129 -------QYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHI 181 Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322 + + K A+ + LK G+ F + A + G + I + Sbjct: 182 LIDVPNNPTSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEM 241 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKAS 381 +L + + AKKGD I G+ I + + + T +EV+ I + + Sbjct: 242 PTLFAEVINGAKKGDIIGPIKTGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSE 301 Query: 382 EKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 ++ K ++ L++ + ++++R+ S D G+ + +P Q L Sbjct: 302 DRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIYVPEFAQTL 358 Query: 441 FRV 443 + Sbjct: 359 NSL 361 >gi|302876603|ref|YP_003845236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] gi|307687277|ref|ZP_07629723.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B] gi|302579460|gb|ADL53472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulovorans 743B] Length = 342 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 7/211 (3%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K+ + V + + V G + + V VG +K+ K + Sbjct: 2 KSIKKLVTAALIGAMVVGATGCGFLEKTETNKAKEVVAKVGDEKITKGDVDEEIKYMIEQ 61 Query: 67 ISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS- 122 + G S G++++ L LV L Q+++D +E + + E+ + Sbjct: 62 AKTQYGEDYASNEEAMKGINEQRKTTLSALVDLKLLLQYVKDNNIEINEDEMEAEVDNAY 121 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 + F L G ++Y D + G ++ +D + Sbjct: 122 KQARDQYGSGDDATFEKLLQDNGYTLEKYKDDIKNAYISSKAREAMSKGAEVTDADIDAS 181 Query: 183 KR---FYFENRSVDYIVLNNRHVPAIADPSN 210 + F +N + ++ V + A P + Sbjct: 182 FKKDEFLTQNANAKFVQYLLCKVESSATPED 212 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 31/234 (13%) Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237 ++ ++ Y ++ + + L ++ + K+ Y + + + Sbjct: 112 EMEAEVDNAYKQARDQYGSGDDATFEKLLQDNGYTLEKYKDDIKNAYISSKAR------- 164 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DE 285 K E+++ ++ A ++K++ + + V+ L+ + A D Sbjct: 165 --EAMSKGAEVTDADIDASFKKDEFLTQNANAKFVQYLLCKVESSATPEDRAAKKKIADA 222 Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 A +K G F A++ S LG+ + E + L G + V Sbjct: 223 ALAEIKGGLSFTDAAKKYSDDPSTKDNGGYLGAVTSESGLVEGFKNVAIGL-NPGQMSEV 281 Query: 342 IHGS-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 + FG+ I +I ++F+ K+ + TK SEK +E ++L + Sbjct: 282 VDEPTFGFFIIK--SISTDEAIAFE--KEKQKTTLLQTKQSEKAEEILQQLRDE 331 >gi|254695417|ref|ZP_05157245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 3 str. Tulya] gi|261215795|ref|ZP_05930076.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 3 str. Tulya] gi|260917402|gb|EEX84263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 3 str. Tulya] Length = 311 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|239995310|ref|ZP_04715834.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii ATCC 27126] gi|332143295|ref|YP_004429033.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii str. 'Deep ecotype'] gi|327553317|gb|AEB00036.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii str. 'Deep ecotype'] Length = 93 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +KEA + LKKGK F LA+ K S LG F + + + D +F Sbjct: 8 HILVKTEKEALSILEQLKKGKDFATLAKRHSKCPSGKRGGDLGEFRRGQMVK-AFDDVVF 66 Query: 331 SLAKKGDFT--PVIHGSFGYVIAH 352 KK + FGY + Sbjct: 67 ---KKDVLKVHGPVKTRFGYHLIK 87 >gi|56461511|ref|YP_156792.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] gi|56180521|gb|AAV83243.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] Length = 92 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 ++ + EA++ + L KG KF +LA + S LG FS+ + + Sbjct: 2 ARAHALHILVETKDEAEKLKEQLTKGAKFAELARKHSLCPSGKKGGDLGEFSRGQMV-PA 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +F + + FG+ + Sbjct: 61 FDKVVFGKPTL-EVHGPVKTQFGWHLIK 87 >gi|39934430|ref|NP_946706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris CGA009] gi|39648279|emb|CAE26799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas palustris CGA009] Length = 347 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 17/177 (9%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--------- 278 E + L V +K S+++LQ YE N+ + P + Q+ P Sbjct: 150 ESAAVELYLQSVSTPPEKFP-SDEDLQKVYEANRAAFAMPRQFELAQIYVPLSRDADKAA 208 Query: 279 ---NQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 +K D+ + LK G F +A E G + +LG + I + + LAK Sbjct: 209 EDAARKSVDDIQRKLKAPGADFSAIASEAG-DANAGALGWVVENQI-RPEIRTKVMELAK 266 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + I G+ V + K +T + EV+ + Q+R +++ + L Sbjct: 267 N-AISEPIKLDDGWHFIKVLDTKAPYTRTLPEVRDGLVQQIRSERSAALRRAYLAEL 322 >gi|254444073|ref|ZP_05057549.1| PPIC-type PPIASE domain protein [Verrucomicrobiae bacterium DG1235] gi|198258381|gb|EDY82689.1| PPIC-type PPIASE domain protein [Verrucomicrobiae bacterium DG1235] Length = 326 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 72/179 (40%), Gaps = 16/179 (8%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----- 279 E ++Y+ + + +S ++ Y++ K+++F E + + Sbjct: 142 MIKEEIIVNYMRSKMRKSAS--VVSPVRIEKFYDEYKQEFFQEEAIHLRLIRLTKLADES 199 Query: 280 ----QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332 ++ ADE ++ L+ G F +LA + G +K + + L+ F++ Sbjct: 200 DDVLKQTADEIYEKLELGFAFDELASKYSNDAKAKKGGDWGWVTKGSLIE-ELSTPAFAM 258 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + GD++ I I + +P + +V++DI + + A E + +RL Sbjct: 259 TE-GDYSEPITIKNNLFILYCEEHRPEGYMPLPDVREDIEDILISQMAREAEAKFLERL 316 Score = 40.7 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 9/136 (6%) Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 I ++ + +K+ + E L LG + DE++ + G KG + Sbjct: 190 IRLTKLADESDDVLKQTADEIYEKLELGFAFDELASKYS-NDAKAKKGGDWGWVTKGSLI 248 Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490 E+L F + + + + ++ +E P L +V D++ Sbjct: 249 ------EELSTPAFAMTEG-DYSEPITIKNNLFILY-CEEHRPEGYMPLPDVREDIEDIL 300 Query: 491 KTVKTAEEVSSKANQL 506 + E + +L Sbjct: 301 ISQMAREAEAKFLERL 316 >gi|262370367|ref|ZP_06063693.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046] gi|262314709|gb|EEY95750.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046] Length = 439 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 46/401 (11%), Positives = 119/401 (29%), Gaps = 63/401 (15%) Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94 F + V V + S S + + + V E+ L ++ L+ L+ Sbjct: 31 FVHASDEVVAVVDNSVILKSDLEASMTELKHQLESQ-KKQVPPEQ----YLAQQALEQLI 85 Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL-AREGINEKEYID 153 T + ++ ++ D + + + S + F +L Sbjct: 86 IRQTQLEQVKRYNIQPDEKSLNEAVLNVA---KQSGSTSLEAFQQKLDKMAPGTYASLRS 142 Query: 154 HYTKMLSRTDVVGMFVGG-MRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIA 206 + L+ + V ++ S+ + Q + V ++ ++ + +A Sbjct: 143 RVAEDLAINRLRQQIVTSRIQISDQDVKNFLNTPQGQAALGNQVHVLHVRVSGDNADTVA 202 Query: 207 D------PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE-- 258 ++ + +K+ E + + E +S ++ + Sbjct: 203 KQVKTVLANDNDVAAIAKKFSTAGTKVEGADMGFRALSDIPSELAARVSPLQVGQITDLI 262 Query: 259 --------------KNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKK 295 K E+ ++ ++ + + ++KG+ Sbjct: 263 TVRDGVHLLKLVERKGAEQKAIVPQYKARHILIQPSEVVSPENAKQMIESLYNRVQKGED 322 Query: 296 FIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 F LA + G + SLG S + +++ + G + FG+ I Sbjct: 323 FAVLASTYSNDTGSARDGGSLGWVSPGVMV-PQFEETMKN-TPVGQTSKPFQTQFGWHIL 380 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 V+ + ++D+ + + A + + E E Sbjct: 381 QVTETR----------QQDMTAEYQERMARQILGERQFDAE 411 >gi|293606739|ref|ZP_06689092.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292814889|gb|EFF74017.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 352 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 32/273 (11%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197 +L L+ ++ + +A + E V + Sbjct: 95 RQQLQDNR---AGMEQWLRARLAEKALIEQARAQGWQDQPEIRRAVQAAEERIVVQSYLE 151 Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257 + P P++A L +E+ K P +S I + Sbjct: 152 SVSRAPDGY-PTDADLQAAYERAKPQLAVPAQYHVSQIFLPAPLGDADA----------- 199 Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317 R + + F +L + + + QG + + L + Sbjct: 200 --------VAATRKQALELTKRAQAPKADFAALAQAHSRDETSRAQGGDIGFVPLAQLTP 251 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 E P + K G+ + + + G+ I ++ ++P+ F++V + +R Sbjct: 252 EMRP-------VIEQMKAGEVSAPVQSAAGFHILKLTALRPASVTPFEQVSPQLRTALRS 304 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 + + + L A ++D + + Sbjct: 305 QRQELAARAYMEGLLN--AGTVTIDGAALNAAL 335 >gi|62317782|ref|YP_223635.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str. 9-941] gi|83269763|ref|YP_419054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis biovar Abortus 2308] gi|189023035|ref|YP_001932776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus S19] gi|237817322|ref|ZP_04596314.1| Chaperone surA precursor [Brucella abortus str. 2308 A] gi|254699074|ref|ZP_05160902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 2 str. 86/8/59] gi|254732517|ref|ZP_05191095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 4 str. 292] gi|260545017|ref|ZP_05820838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus NCTC 8038] gi|260760321|ref|ZP_05872669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 4 str. 292] gi|260763561|ref|ZP_05875893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 2 str. 86/8/59] gi|62197975|gb|AAX76274.1| hypothetical peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str. 9-941] gi|82940037|emb|CAJ13074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis biovar Abortus 2308] gi|189021609|gb|ACD74330.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus S19] gi|237788135|gb|EEP62351.1| Chaperone surA precursor [Brucella abortus str. 2308 A] gi|260098288|gb|EEW82162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus NCTC 8038] gi|260670639|gb|EEX57579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 4 str. 292] gi|260673982|gb|EEX60803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 2 str. 86/8/59] Length = 311 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|261209784|ref|ZP_05924089.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341] gi|260841174|gb|EEX67687.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341] Length = 431 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 64/379 (16%), Positives = 123/379 (32%), Gaps = 90/379 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + K Q + L +++L+ L+ Sbjct: 28 DGVAVIVNSGVILQSDVDGALKTVKANAKQN-----KQPLPQESVLREQVLEKLIIDTLQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEF-------- 130 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R V + L+ + E ++ ++ A ++A + Sbjct: 131 -REQVRKEMAASDARNALVRRRINILPAEVDTLAELL---------AQETDATVQ----- 175 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +IS+I V E + K E Sbjct: 176 ----------YKISHIQLRVEEGQDKSE-------------------------------A 194 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + A++ LK G F Q+A K +L G KE +P AD I + KG Sbjct: 195 ESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIANQMRITKASEKVKEDYK 389 G+ I + +++ TV+ EV K I + A +++ E + Sbjct: 253 SIIGPFRSGVGFHILKIDDVRGLETVAVTEVNARHILIKPTII--LSDDGAQKQLSEFVQ 310 Query: 390 RLEEFLALGTSMDEISRRE 408 R++ S E++++ Sbjct: 311 RIKN---GEVSFGELAQQY 326 >gi|302039583|ref|YP_003799905.1| putative peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira defluvii] gi|300607647|emb|CBK43980.1| putative Peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira defluvii] Length = 304 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 6/159 (3%) Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296 + K+E+S +EL A K+ + + V ++ PN A + + ++ G F Sbjct: 126 LLKDRIKTKVEVSKEELDAYLGKHANQLLANPKVQVSIMLLPNVYAAKDLKRQVEAGGNF 185 Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 + A LG + K + D++ G + I + GY + Sbjct: 186 TRFALRYSIDERSRAKGGDLGPYKKGLL--EPEVDALIPSLHPGVISDPIKTAQGYYLVK 243 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 VS ++P + Q ++ + ++ K +++ + + L Sbjct: 244 VSPLEPEILQADQATRERLRQELLAEKRRKRLDDVFAEL 282 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + + + + S F W+ + G ++ LD L+ L Sbjct: 45 EPVIAMINGRSITQSEFDIRWEDLSQATRARY---------EKEGGKRRFLDELIMRELL 95 Query: 100 DQFIEDIGLEADHG 113 Q GL+ Sbjct: 96 MQEARKQGLDQSDE 109 >gi|270264226|ref|ZP_06192493.1| hypothetical protein SOD_g01590 [Serratia odorifera 4Rx13] gi|270041875|gb|EFA14972.1| hypothetical protein SOD_g01590 [Serratia odorifera 4Rx13] Length = 93 Score = 74.6 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ N+K A++ LK+G F LA + S +LG F+K + + ++F Sbjct: 9 HILVDNEKLANDLLAKLKRGVSFDTLARKYSSCPSKRNGGALGEFNKGTMV-AAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SIPLLKP---YGPVKTQFGYHIIKV 89 >gi|325283666|ref|YP_004256207.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus proteolyticus MRP] gi|324315475|gb|ADY26590.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus proteolyticus MRP] Length = 349 Score = 74.3 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 9/137 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 E + S+ +++ Y N+ + E ++ ++ +A + +L G F L Sbjct: 170 SELRTRFTFSDAAVESYYALNRHSFVQREEACARHILVTSEVQARDLRVALLAGADFALL 229 Query: 300 AEEQGKSLSDISLGSFSKEYIPD---VSLADSIF--SLAKKGDFTPVIHGSFGYVIAHVS 354 A Q + S G P + ++F +L V+ G+ + V+ Sbjct: 230 ARSQSRDPGSASRGGELGCLAPGETVAAFEATLFGAALGTP----QVVQTDHGWHVVEVT 285 Query: 355 NIKPSFTVSFQEVKKDI 371 + + ++ + Sbjct: 286 ERHAAGVIPPEQAAPQV 302 >gi|209519024|ref|ZP_03267832.1| SurA domain protein [Burkholderia sp. H160] gi|209500536|gb|EEA00584.1| SurA domain protein [Burkholderia sp. H160] Length = 478 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 41/339 (12%), Positives = 89/339 (26%), Gaps = 80/339 (23%) Query: 31 SDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86 + AL G TV V + ++Q+ V ++ L Sbjct: 53 AQALGGNGGGQTVDTIAAVVNNGVITQRELDERAGLIAHRLNQQNAPVPPMDQ-----LR 107 Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146 +++L +V Q ++ G+ D V + + Sbjct: 108 QQVLTQMVLERIQLQKAKEDGITIDDTAVERTL------------------ERLAQANNM 149 Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 Y G+ + D L + V + Sbjct: 150 TLAMYRARIEAQ------------GVPWTTFTNDARTELTLSR-------LREKEVDSKI 190 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266 ++A + + R P + + + + + +++A Sbjct: 191 TVTDAEVANYIASQ----RGPGAGQTNDLHMQHIFVKAPLNAPETDIEA----------- 235 Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD 322 QK+A+ K G F +LA+ ++ LG + +P Sbjct: 236 ------------AQKKAEGLLAEAKGGADFEKLAKNNSQAPDASKNGGDLGFLAPSKLP- 282 Query: 323 VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSF 360 + L + G+ P +I + G+ I + + Sbjct: 283 PEFVKAASGL-RPGEINPDLIRTNDGFEIVRLVERRAGQ 320 >gi|134282592|ref|ZP_01769296.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 305] gi|134246149|gb|EBA46239.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 305] Length = 240 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 85 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 143 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 144 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 201 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 202 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 236 >gi|227904499|ref|ZP_04022304.1| peptidylprolyl isomerase [Lactobacillus acidophilus ATCC 4796] gi|227867754|gb|EEJ75175.1| peptidylprolyl isomerase [Lactobacillus acidophilus ATCC 4796] Length = 306 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 79/238 (33%), Gaps = 28/238 (11%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +++ + L + E + Y S+ + + + Sbjct: 47 ITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------------VSSKKVDKQYN 93 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270 YK Y + + ++ ++ +S L+ + K++ Sbjct: 94 NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKITKKQEQQAWKSYQPKV 153 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325 TV+ ++ + A + + LK GK F LA++ + + S + D + Sbjct: 154 TVQHILVAKKSTAQDIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAF 213 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + F L + + GY + + N P+ F + KK I +++ + A ++ Sbjct: 214 KTAAFKLKTGEVTSTPVKSQSGYHVIKMIN-HPAKGK-FADHKKAIDDEIYASMAQDQ 269 Score = 41.5 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 40/233 (17%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + +STV S K+ + + + K L N++ Sbjct: 32 NSGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 71 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + ++ Sbjct: 72 NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 121 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 L + + + QA + Y +V +I++ + + + + Sbjct: 122 KTNLLSEQALKHIK---KITKKQEQQAWKSYQPKVTVQHILVAKKS-------TAQDIIK 171 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + K + + + K + +++ L + ++ K + E Sbjct: 172 QLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAFKTAAFKLKTGE 224 >gi|254507748|ref|ZP_05119879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16] gi|219549273|gb|EED26267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16] Length = 181 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 17/185 (9%) Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497 Q + K+D L+ + + + V++++ L++V V +K + Sbjct: 3 QAILSPEVKEDGLN-SEVIEVAPEHVIVVRVEDYRDEMVLPLDDVREQVVATLSKIKGEQ 61 Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557 + A++LV E KEGK +++ G + ++R +F+ P Sbjct: 62 NAIALADKLVAEL-KEGK--QELLNENGLAFNDVQAVDR--------SAPMADVIFAMPK 110 Query: 558 EMVKCFPIEN----GLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612 + V K++N Q + + LTQM + L +I+ L+ Sbjct: 111 PSEGKVEYAQAKELNGNIAVVKLSNVSDEFDAQYNAQISNQLTQMNAQLDLTGLISVLRK 170 Query: 613 QYSVT 617 + Sbjct: 171 TTDIE 175 >gi|238020925|ref|ZP_04601351.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147] gi|237867905|gb|EEP68911.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147] Length = 290 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 89/244 (36%), Gaps = 17/244 (6%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR---------HVPAIADPSNAVLTQ 215 V V G + + ++F + ++ +V S Sbjct: 41 VQAVVAGSQGQVQDSPELRQFIAQQTVLETVVTQAAKKQGLDKSKEYKDAESESMKQAKA 100 Query: 216 WFEKYKDNYRAP--EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 + +++ +Y+ + + K +++ ++Q Y + K++Y + + + Sbjct: 101 QGADKQADFKQQWADYQNQLLMQVYARDVINKNPVTDAQVQQRYNEIKQRYDNTDEVQIG 160 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS----- 328 +++ N ++ A + LK K F ++A + + + G+ +YI L ++ Sbjct: 161 EIITDNAEQIKAAERDLKAKKSFAEVARKYSIDPNIKAGGAVFSDYISLRDLQEARPNIY 220 Query: 329 -IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 KKG ++ I G + + ++++ + ++K+ + + + E V Sbjct: 221 QAIGSLKKGQYSKPISGDKLHAVYYINDKRKISIEPLDKIKEGLRAGLANERVQEAVGNL 280 Query: 388 YKRL 391 + Sbjct: 281 MQNA 284 >gi|323466514|gb|ADX70201.1| Protease maturation protein [Lactobacillus helveticus H10] Length = 301 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 27/210 (12%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILF 237 + ++ + + S+ + Q + YK+ Y + I L Sbjct: 60 ANLLIYDALNEQYGKKLSSKAVNQEYNNYKERYGDQFASFLSQNGYTTTSFRRMIKINLL 119 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297 + +I+ ++ +L+ E++ TV+ ++ ++ A+ Q L G F Sbjct: 120 SKIALKAQIKPTDKQLKKEWKTYSPS------VTVQHILTTDKNTANTVIQKLNNGTSFA 173 Query: 298 QLAEEQGKSLSDISLGS----FSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 LA++ S S G F+K+ D S D+ + L T + + GY I Sbjct: 174 SLAQKYSVDSSSSSNGGKIAAFNKDNKQLDSSFKDTAYKLKNGEYTTTPVKTTNGYEIIK 233 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE 382 + IK +F+E K+D+ N + A+ Sbjct: 234 M--IKHPAKGNFEENKQDLINNLYDKWAAN 261 >gi|206890347|ref|YP_002248393.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742285|gb|ACI21342.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 341 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 55/381 (14%), Positives = 125/381 (32%), Gaps = 83/381 (21%) Query: 14 AKIFLVVLFVPF----LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 K ++ V F LI+ L+ + V R + +S E + Sbjct: 23 IKFVFFLMIVFFCTQLLIFKLNAEENKFFVDKVIAVVNRDVITWSELYK--YMEFTAKDE 80 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 + + +++ L+ L+ + E G+ + G I K Sbjct: 81 IKALNPDEKFKYFKAHEEEFLERLIDTKLQIEEAEKYGIFVTDSEIEGAINDI----KKK 136 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 + F+ L +EG++ I+ Y KML ++G + + S +++ Sbjct: 137 YALTEQAFLETLKKEGMS----INDYKKMLKEQIIIGRALNTLVKSKIII---------- 182 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 ++A + + + + E +S I Sbjct: 183 -------------------TDAEINNYIAAHPELSCDDEGYYVSQIFL------------ 211 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309 K++ E+ + + +E F+ L +G+ F ++A + + ++ Sbjct: 212 -----------KKRENQEEL----------KAKINEVFKRLIQGEPFSKVASQMSEDVTA 250 Query: 310 ISLGSFSKEYIPDVSLA-DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 + G+ +++ ++FS G + + G I + + F++ Sbjct: 251 KTGGAIGLLKKKEIASELSNLFSKMNIGQVSEPMMTEHGIFIFRLDGV------CFKKGS 304 Query: 369 KDIANQMRITKASEKVKEDYK 389 + + N +R EK K+DYK Sbjct: 305 EQLVNYVRSLLEDEKFKKDYK 325 >gi|254183780|ref|ZP_04890372.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 1655] gi|184214313|gb|EDU11356.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 1655] Length = 240 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ Y + K K + E + L P + +A L +G F +L Sbjct: 85 DDFFSAVSVDEDDIGTAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 143 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 144 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 201 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 202 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 236 >gi|167465135|ref|ZP_02330224.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 246 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 97/351 (27%), Gaps = 112/351 (31%) Query: 5 IRKASRTWVA---KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61 +R W VV+ V F+I+G + A + + V +G+ K+ + Sbjct: 1 MRNIKLLWAVIGGLSLAVVVLVCFVIFGFTGA--ASGNGTVVAEIGKTKIRKGDLEQNLI 58 Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121 G +L+ ++ + + GL+ + E+ Sbjct: 59 THYGS---------------------SVLNQMLDREAIKMEAQSAGLQISDADIDKELKV 97 Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181 + + F + S + G++ +E D Sbjct: 98 MMQAYESEEVF----YQSMKEQLGMSRQEVKD---------------------------- 125 Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241 V Y +L + S++ + + + + + Y Sbjct: 126 ---------DVYYKLLLEKVATKDIQVSDSEIQDYIQAHPEEY----------------- 159 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 + ++ +++A++ + KG F +LA Sbjct: 160 -----------------------AKKREMHLRRVTTKTREQANKVVAAFSKGDDFAKLAR 196 Query: 302 EQGKS---LSDISLGSFSKEY-IPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 ++ + LG ++ + D + L K G + + + GY Sbjct: 197 DRSIDDYANNGGDLGWVKEDDPLTDKQVMKQAKDL-KVGQISKPVQTNEGY 246 >gi|126173223|ref|YP_001049372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS155] gi|125996428|gb|ABN60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica OS155] Length = 434 Score = 74.3 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 114/371 (30%), Gaps = 71/371 (19%) Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 N L ++++ L+ Q + IGL ++ I K S Sbjct: 59 NQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KISVA 114 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 ++ EG++ Y + L + L + +R + R Sbjct: 115 QMQQKIESEGLS----FSQYREQLRE--------------EITLGEIQRIQVQRR----- 151 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 S +T + ++ +I +IL DV + Sbjct: 152 ----------IQVSPQEITSLVKLIQEQGMKDVEYQIGHILIDVPNNPTSEQ-------- 193 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315 + + K A+ + LK G+ F + A + G + Sbjct: 194 --------------------LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIW 233 Query: 316 SKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IAN 373 I + +L + + AK GD I G+ I + + + T +EV+ I Sbjct: 234 DYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILL 293 Query: 374 QMRITKASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432 + + ++ K ++ L++ + ++++R+ S D G+ + Sbjct: 294 KPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIY 350 Query: 433 IPYKEQLLFRV 443 +P Q L + Sbjct: 351 VPEFAQTLNSL 361 Score = 51.9 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 268 EIRTVEQLVFP-----NQKEADEAFQS----LKKGK-KFIQLAEEQGKSLSDISLGS--- 314 E ++ ++ A + ++ G+ KF LA + + + G Sbjct: 284 EEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELG 343 Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 +++ I A ++ SL K + + G+ I + + + Sbjct: 344 WAEPSIYVPEFAQTLNSL-KTDQISEPFRTTHGWHITQLEERRKTDATD 391 >gi|294853303|ref|ZP_06793975.1| peptidyl-prolyl cis-trans isomerase C [Brucella sp. NVSL 07-0026] gi|294818958|gb|EFG35958.1| peptidyl-prolyl cis-trans isomerase C [Brucella sp. NVSL 07-0026] Length = 311 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 IPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|183597819|ref|ZP_02959312.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827] gi|188022575|gb|EDU60615.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827] Length = 439 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 41/362 (11%), Positives = 109/362 (30%), Gaps = 59/362 (16%) Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140 L +IL+ L++ + Q + + V IA + N + + +R Sbjct: 62 DDETLRHQILERLITDNIMLQMANQMQINIPEEAVNATIADI----ARQNGLTFEQMQAR 117 Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDY-IVLN 198 L +GI+ +Y K + +V + ++ + + + L+ Sbjct: 118 LKADGIDMAKYRSEIRKEMLIAEVRNNEVRRRVTILPQEVESLAKQISSQADYEASVNLS 177 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN-------- 250 + +P +P+ L + + K ++ + + Sbjct: 178 HILIPLPENPTQEQLQK-ADAIVAKIMDEIKKGTNFGKLAIAYSADPQALKGGNMGWSRL 236 Query: 251 DELQAEYEKNKEKYFSPE-----------------------------IRTVEQLVFPN-- 279 EL + + + + ++ + Sbjct: 237 QELPVVFAEQLKSAKKGDVVGPIRSGVGYHILRVNEMNSANKTISVTEVKARHILIKSSP 296 Query: 280 -------QKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADS 328 +++ + Q ++ GK F A+E + G +PD + D+ Sbjct: 297 IMDDNQARQKLTQITQDIRSGKTTFENAAKEFSEDPGSALKGGELGWNMPDVYDPAFRDA 356 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + L KG+ + + +FG+ + + + + + + K + K +E+ + Sbjct: 357 LMRL-NKGEISQPVRSNFGWHLIQLEDTR-NVDKTDAAQKDQAYRLLFNRKFNEEAQSWV 414 Query: 389 KR 390 + Sbjct: 415 QE 416 Score = 60.4 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 101/314 (32%), Gaps = 43/314 (13%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 YR+ K + +E +++ I E+++ ++ + + ++ P + Sbjct: 126 AKYRSEIRKEMLIAEVRNNEVRRRVTILPQEVESLAKQISSQADYEASVNLSHILIPLPE 185 Query: 282 --------EADEAFQSL----KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--LAD 327 +AD + KKG F +LA + G+ + ++ A+ Sbjct: 186 NPTQEQLQKADAIVAKIMDEIKKGTNFGKLAIAYSADPQALKGGNMGWSRLQELPVVFAE 245 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS-FTVSFQEVKKD---IANQ--MRITKAS 381 + S AKKGD I GY I V+ + + T+S EVK I + M +A Sbjct: 246 QLKS-AKKGDVVGPIRSGVGYHILRVNEMNSANKTISVTEVKARHILIKSSPIMDDNQAR 304 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441 +K+ + ++ + T+ + ++ S D G+ P L Sbjct: 305 QKLTQIT---QDIRSGKTTFENAAKEF---SEDPGSALKGGELGWNMPDVYDPAFRDALM 358 Query: 442 RVFGKDDPLSKDHT-----VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 R+ + + L D + D+ + K Sbjct: 359 RLNKGEISQPVRSNFGWHLIQLEDTRNV-----------DKTDAAQKDQAYRLLFNRKFN 407 Query: 497 EEVSSKANQLVLEY 510 EE S + Sbjct: 408 EEAQSWVQEQRAAA 421 >gi|127511815|ref|YP_001093012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica PV-4] gi|126637110|gb|ABO22753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica PV-4] Length = 434 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 40/344 (11%), Positives = 109/344 (31%), Gaps = 63/344 (18%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + S++A L ++++ L+ Q + IGL ++ I K+ K Sbjct: 59 GQSLPSDKA----LRTQVIERLIVTRLQLQMADRIGLHIGDLQLDQTIENI----AKEQK 110 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLS-----RTDVVGMFVGGMRPSNLLLDQAKRFY 186 + ++ ++ EG++ +Y + + ++ R V + N L+ + Sbjct: 111 MTPEMMREKVEAEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLIEEQG 170 Query: 187 FENRSVDYIVL--------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238 + + N+ + A + +NAVL + + +++ S Sbjct: 171 MQQVEYQIGHILIEVPNSPNSEQLEAASSRANAVLKRLQDN--ADFKQTAIASSSGPKAL 228 Query: 239 VHEKEKKIEISN-----DE---------------------LQAEYEKNKEKYFSPEIRTV 272 + ++ E + + + + Sbjct: 229 EGGIWDYMNVNEMPTLFAELLVGAKTGDIIGPVRSGAGFHIIKVMDARGLQTKEIDEVRS 288 Query: 273 EQLVFP-----NQKEADEA----FQSLKKGK-KFIQLAEEQGKSLSDISLGS---FSKEY 319 ++ +++ A L++G+ F LA + + + G ++ Sbjct: 289 RHILIKPSPILSEERAKAMLDKFAAQLRRGEADFATLARQYSEDPGSAAKGGELGWADPT 348 Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + + A ++ +L K + + S G+ I + + + Sbjct: 349 VYVPAFAQTLGAL-KINEISEPFRSSHGWHIVQLEERRKTDATD 391 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 75/240 (31%), Gaps = 24/240 (10%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ- 280 YR + I+ + +++I++S E+ + + +E+ + ++ Sbjct: 128 SQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLIEEQGMQQVEYQIGHILIEVPN 187 Query: 281 -----------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 A+ + L+ F Q A + G + + + +L Sbjct: 188 SPNSEQLEAASSRANAVLKRLQDNADFKQTAIASSSGPKALEGGIWDYMNVNEMPTLFAE 247 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEK 383 + AK GD + G+ I V + + T EV+ I + +A Sbjct: 248 LLVGAKTGDIIGPVRSGAGFHIIKVMDARGLQTKEIDEVRSRHILIKPSPILSEERAKAM 307 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + + +L A ++ + + + +A +P Q L + Sbjct: 308 LDKFAAQLRRGEADFATLARQYSEDPGSAAKGGELGWA------DPTVYVPAFAQTLGAL 361 >gi|121606958|ref|YP_984287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] gi|120595927|gb|ABM39366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas naphthalenivorans CJ2] Length = 469 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 66/473 (13%), Positives = 137/473 (28%), Gaps = 89/473 (18%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 VV V + + + + + Q+ + L ++L+ ++S Q Sbjct: 64 VVVVNSEPITNNEVRTKLLRTEQQLKQQ-----SIALPPRSELMPQLLERMISDKAQLQA 118 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + G + D V G + + N+ + D RL +GI+ ++ L + Sbjct: 119 AQATGFKIDDNAVEGAVQTV----ARQNQITVDELRRRLKADGIDYAQFRSEIRDELLIS 174 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 + R V + + S + + Sbjct: 175 RLRQ---------------------------------REVESRINVSEMEIDDY------ 195 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282 R+ E K + +I ++ + +PE V Q + Sbjct: 196 -LRSQEGKPGAAGAAPAALNLAEILVA-----------VPENATPEQ------VASLQAK 237 Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGDFTP 340 A + + K G F LA E + S + G ++ SL G Sbjct: 238 ARQVLERAKAGADFAALATEVSAAASRSNGGQIGLRSADRYPPLFVEATQSLP-AGGLAG 296 Query: 341 VIHGSFGYVIAHVSNIK----PSFTVSFQEVKK---DIANQMRITKASEKVKEDYKRLEE 393 + + G+ I V + P ++ + + Q+ A EK+ KR+ Sbjct: 297 PVRSAAGFHILKVIEKRQGGLPDAVITQTHARHILLRLTPQLTEAAAVEKLAGFKKRI-- 354 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 +A ++R + G A +P E+++ + ++ Sbjct: 355 -VAGQADFAALARENSQDA----SAKQGGDLGWVPGGAFVPEFEKVMNAL-----APNQV 404 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + VQ+ E A ++ V+ + K E A + Sbjct: 405 SDPLVSRFGVHLVQVLERREAPVSPRDQ-REMVRGMLREKKQNEAYVRWAEDI 456 >gi|17537235|ref|NP_496824.1| hypothetical protein Y48C3A.16 [Caenorhabditis elegans] gi|5832912|emb|CAB55116.1| C. elegans protein Y48C3A.16, confirmed by transcript evidence [Caenorhabditis elegans] Length = 126 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q +A EA + LK G KF ++A + + S LG ++ + D+ Sbjct: 34 KVRHILCEKQGKALEAIEKLKSGMKFNEVAAQYSEDKARSGGDLGWMTRGSMVGP-FQDA 92 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L+ K P + FGY + V K Sbjct: 93 AFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 126 >gi|76819072|ref|YP_335569.1| putative rotamase [Burkholderia pseudomallei 1710b] gi|254186693|ref|ZP_04893209.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pasteur 52237] gi|76583545|gb|ABA53019.1| putative rotamase [Burkholderia pseudomallei 1710b] gi|157934377|gb|EDO90047.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei Pasteur 52237] Length = 244 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 89 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 147 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 148 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 205 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 206 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 240 >gi|89072826|ref|ZP_01159383.1| peptidyl-prolyl cis-trans isomerase C [Photobacterium sp. SKA34] gi|89051348|gb|EAR56803.1| peptidyl-prolyl cis-trans isomerase C [Photobacterium sp. SKA34] Length = 108 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 18/100 (18%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 ++ +++ AD+ + LKKG KF +LA++ S LG F K + Sbjct: 6 HALHILVKHKELADDILEQLKKGAKFQELAKKHSTCPSGKKGGDLGEFRKGAMV-PQFDK 64 Query: 328 SIF---------SLAKK-----GDFTPVIHGSFGYVIAHV 353 ++F +L KK G + FG+ I V Sbjct: 65 AVFSGKAISTSEALKKKNNNLRGLIPEPVKTKFGWHIIKV 104 >gi|330504383|ref|YP_004381252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] gi|328918669|gb|AEB59500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas mendocina NK-01] Length = 93 Score = 73.9 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVS 324 T ++ ++ + +E +++ G F QLA++ S LGSF + Sbjct: 2 ARATARHILVASEDKCNELKSAIEGGADFAQLAKDNSTCPSGRSGGDLGSFGPGQMVK-E 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A G + FGY + V++ + Sbjct: 61 FDTVVFS-APVGVVQGPVKTQFGYHLLEVTSRQ 92 >gi|254699581|ref|ZP_05161409.1| Chaperone surA precursor [Brucella suis bv. 5 str. 513] gi|261750037|ref|ZP_05993746.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5 str. 513] gi|261739790|gb|EEY27716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5 str. 513] Length = 311 Score = 73.9 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 16/155 (10%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------- 285 + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 120 ALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQ 179 Query: 286 -----AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGD 337 A + + F +A E S +LG ++ ++ + Sbjct: 180 TATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERMTPGET 238 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 239 TANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|306840866|ref|ZP_07473611.1| Chaperone surA precursor [Brucella sp. BO2] gi|306289137|gb|EFM60393.1| Chaperone surA precursor [Brucella sp. BO2] Length = 311 Score = 73.9 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + + + S DE Q YE N+ ++ S I ++ EA Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQEAR 174 Query: 288 QS------------LKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSL 332 + + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FG+ I + + F V IA Sbjct: 234 TPGETTANPIESRFGFHIVRLDRRVEGEELPFDYVADKIA 273 >gi|326570911|gb|EGE20935.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis BC7] Length = 434 Score = 73.9 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 122/405 (30%), Gaps = 74/405 (18%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90 ++ S V V + + S + + + QK G V ++A+++ L Sbjct: 23 QASISGNSHDGIVAVVNDEIILKSELNQA-TELVATEIQKNGGNVTQDQAQTL-----AL 76 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEK 149 D L++ I G+ + + ++ + G + S F S+L E + Sbjct: 77 DELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVN---SLSEFQSKLDAERAGSYV 133 Query: 150 EYIDHYTKMLSRTDV-VGMFVGGMRPSNLLLDQAKRFYFENR--SVDYIVL--------- 197 + + + + +R ++ +D R V Y +L Sbjct: 134 ALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN 193 Query: 198 --------NNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 V S + + Y + + + I+ Sbjct: 194 TASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIA 253 Query: 243 EKK------------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQK 281 K + ++ ++ K ++ ++ ++ Sbjct: 254 AKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQ 313 Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + +Q L++G F LA SLG ++ + + + AK GD Sbjct: 314 KINAIYQQLQQGVDFGTLAATYSDDTGSASQHGSLGWVNEGDMV-PEFETMMKNTAK-GD 371 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 F+ FG+ I V++IK + DI Q R A E Sbjct: 372 FSTPFRSQFGWHILKVNDIK----------QHDITEQYRRNAAHE 406 >gi|262039460|ref|ZP_06012764.1| foldase protein PrsA [Leptotrichia goodfellowii F0264] gi|261746527|gb|EEY34062.1| foldase protein PrsA [Leptotrichia goodfellowii F0264] Length = 607 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 77/269 (28%), Gaps = 41/269 (15%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLI------WGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57 +RK + K + L + F + W + + V +K+ Sbjct: 2 SVRKHKN--IIKGISIALIIAFALSMVYAGWNFLKNNVFIERKKVIAEVNGEKIYADDME 59 Query: 58 NSWK-----------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 S+ Q I+Q G N + L + +L L+ L +D+ Sbjct: 60 KSYADLSSRLDSIVAQRKQQIAQLGGNPDNFKSLPEELLREYLLKGLIDQKLLLSSAKDL 119 Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 ++ + + + + F+ L G N Y + + V Sbjct: 120 KVKVSSADIDKIVEND---QKQAGG--KENFIRLLGTNGYNLTTYKEFIRDKMLLEKVAE 174 Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226 + S+ L +A Y N + + ++ Sbjct: 175 KIESSSKISDEELKKAYE--------RYKYFNFQD-QTFEEAKPQLIETLNGDN------ 219 Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQA 255 E IS L + K I+I ND+++ Sbjct: 220 -EQMLISSYLVKAWKNAK-IKIKNDDVKK 246 Score = 65.8 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 53/471 (11%), Positives = 146/471 (30%), Gaps = 61/471 (12%) Query: 49 QKVPFSSFINSWKQE-LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107 K+ ++++ + + ++ D + L+S + + ++ Sbjct: 180 SKISDEELKKAYERYKYFNFQDQTFEEAKPQLIETLNGDNE--QMLISSYLVKAW-KNAK 236 Query: 108 LEADHGRVWG------------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 ++ + V I + + + + + +E Y + Sbjct: 237 IKIKNDDVKKIDYKKMYENITKTIVEKDGYKFEGGSLNEKIITMFVN----SENGYSEAL 292 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 + L + + + A N + Sbjct: 293 REE---------------AKKSLESDLNKLIEIAKKAKAAGIKASPEAAGIQELNDYAKK 337 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 ++ D Y+ E + + I+ + ++ +K + Sbjct: 338 YYSYLIDTYKPTEQAMLERFNSKRETYNIQNTIAGQVVGDYFQPSKADFD---------- 387 Query: 276 VFPNQKEADEAFQSLKK---GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 +K+A+E +++ G+K +L+++ G + LG + A+++ Sbjct: 388 --EVKKKAEELIKTVNVENFGQKAKELSQDPGSKDNGGQLGVIDLSGMV-PEFAEAV-KK 443 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 A+KG + FGY I +V + K S +V + +++ + K L+ Sbjct: 444 AEKGKIVGPVKTQFGYHIIYVED-KDSSNSDKAKVSHILLTPSVSEATKQELIKKMKTLK 502 Query: 393 EFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-YKEQLLFRVFGKDDPL 450 + L A + +++ ++K + + K K + + + Y +L ++F Sbjct: 503 DELTAKKVTWQQVNTQDKY---KFEIKEQFKKLTKSQPIPGVGKYDSELSNKLFASKVGD 559 Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 +H Y + +P ++ + V ++ + EE+ Sbjct: 560 IIEHQTEY---GYFLLSKISEVPFKEVTFDSVKERIRLELAFEHVNEEIEK 607 >gi|110679691|ref|YP_682698.1| peptidyl-prolyl cis-trans isomerase, putative [Roseobacter denitrificans OCh 114] gi|109455807|gb|ABG32012.1| peptidyl-prolyl cis-trans isomerase, putative [Roseobacter denitrificans OCh 114] Length = 276 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 17/185 (9%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 + E + +L + S ++AE+EK+ ++ +P + V ++ Sbjct: 69 PSRFETEEEALVRGLLDEAVVVSAP---SAASVRAEWEKDPLRFRTPPLWEVSHILVACD 125 Query: 281 KEADEAF------------QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLA 326 +EA Q+L F +LA + S + G+ ++ D Sbjct: 126 PRDEEARRQAHARAVDLTGQALGNPNGFAKLAARESDCGSKSTGGALGQQSPGDTVPEFE 185 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 ++ L + G I +G+ I + + + F VK+ I++ M + K+ Sbjct: 186 AALRQLTEGGITGEPILTRYGWHIIKLDAVAIGAVLPFDAVKQKISDAMEKASWARAAKD 245 Query: 387 DYKRL 391 + L Sbjct: 246 FVQTL 250 >gi|23500050|ref|NP_699490.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330] gi|254702703|ref|ZP_05164531.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis bv. 3 str. 686] gi|261753291|ref|ZP_05997000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3 str. 686] gi|23463639|gb|AAN33495.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis 1330] gi|261743044|gb|EEY30970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3 str. 686] Length = 311 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVVDKIA 273 >gi|222056243|ref|YP_002538605.1| hypothetical protein Geob_3161 [Geobacter sp. FRC-32] gi|221565532|gb|ACM21504.1| conserved hypothetical protein [Geobacter sp. FRC-32] Length = 580 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 88/184 (47%), Gaps = 11/184 (5%) Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 ++ ++R + + +F +I+++++E++A Y +++ PE+ + L Sbjct: 390 YKNRIKDFRD----SLLFGMFIQKVVASEIKVTDEEIKAHYNAEIDEFSLPEMLKLRGLA 445 Query: 277 FPNQKEADEAFQSLKKGKKFIQL-AEEQGKSLSDIS-LGSFSKEYIPDVSLAD---SIFS 331 F + A+ A + L+KG ++ L A +G D L SFS+ + SL + + Sbjct: 446 FTRKDFAEAAMEKLQKGTEYQWLQANAEGLVPGDTEGLMSFSQTPVTRKSLPEKMQEAIA 505 Query: 332 LAKKGDFTPVIHGSFGYV-IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 AK G++ + G+V + V + P+ ++VK+ I ++ K ++ V++ ++ Sbjct: 506 AAKPGEY-RLFETPEGFVYVIQVQEVIPAKPQPLEQVKQSITKEVFNQKLNKSVEDWGQK 564 Query: 391 LEEF 394 L E Sbjct: 565 LREA 568 Score = 51.9 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 60/441 (13%), Positives = 142/441 (32%), Gaps = 74/441 (16%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 ++ K ++ + + + Y++ ++ +R F + +A E ++++ G F +L Sbjct: 145 EQQIKDLKPAEADTERFYKEAVKELKVKSVR------FDKEDDAKELARAVQAGGNFDEL 198 Query: 300 AEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 A + + + G F K +A + SL + G +PV+ Y I + +I+ Sbjct: 199 ANSLIESGKATGVKEGEFVKAKELLPQVAHIVSSL-RVGGISPVVQVGPAYTILKLEDIR 257 Query: 358 -PSFTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSMDEISRREKIVS 412 P+ + +E ++ A ++ + + + Y +++ L + + Sbjct: 258 YPADDMEAREAAREQALALKQLQVLTEYNGMLVKKYAKIDRKLLDKLDFESAKPGFDKLL 317 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF-------GKDDPLSKDHTVALPDGSY-- 463 D ++ +KG + + ++L + F K +++ AL D Y Sbjct: 318 KDKRVIA----TIKGDKPITVADLGEMLKQKFFHGVKEAAKGKRINEQKMPALYDIFYAR 373 Query: 464 --------MWVQIKESIPARDRKL----------------------EEVLTDVKKDWKTV 493 + + ES R + EE+ + Sbjct: 374 LYPMEAKKLGLDKTESYKNRIKDFRDSLLFGMFIQKVVASEIKVTDEEIKAHYNAEIDEF 433 Query: 494 KTAEEVSSK---------ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI---NRMDNEN 541 E + + A + + K + G T + ++ Sbjct: 434 SLPEMLKLRGLAFTRKDFAEAAMEKLQKGTEYQWLQANAEGLVPGDTEGLMSFSQTPVTR 493 Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601 K + + + F G YV+ +V Q ++ +T+ + Sbjct: 494 KSLPEKMQEAIAAAKPGEYRLFETPEGFVYVI-QVQEVIPAKPQPLEQVKQSITKEVFNQ 552 Query: 602 LLDSVIAY----LKSQYSVTV 618 L+ + L+ Y V V Sbjct: 553 KLNKSVEDWGQKLREAYKVQV 573 Score = 40.0 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S V +VG V F S L + Q+ G ++ + +L+ L++ + Sbjct: 61 SVPVATVGDDVVTMEEFNQS----LAALHQRAGEDESAGKKDY----NIVLNRLINSKLI 112 Query: 100 DQFIEDIGLEADHGRVWGEIARSP 123 Q E++GL AD V ++ P Sbjct: 113 VQEAENMGL-ADLPEVKEKLEDFP 135 >gi|281421755|ref|ZP_06252754.1| chaperone SurA [Prevotella copri DSM 18205] gi|281404250|gb|EFB34930.1| chaperone SurA [Prevotella copri DSM 18205] Length = 328 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 37/182 (20%) Query: 253 LQAEYEKNKEKYFSPEI--RTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQ 298 + Y+ + P+ V ++ ++A D +Q+L KG F Sbjct: 87 VLKRYDDVEPCELMPDKGSVHVAHILLRLGQKASYREQEVVERRIDSIYQALCKGADFAD 146 Query: 299 LAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ ++G +++ +L F+K + FSL K G+ + FGY I + Sbjct: 147 LAKKCSDDKGSAVNGGTLAWFTKGQTV-QAFEKVAFSLRK-GEISRPFMSEFGYHIVKLL 204 Query: 355 NIKPSFTVSF-----------------QEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397 + +EV+ + N++ +K D K L F A Sbjct: 205 DKHDDGNQKKYVADAKVENWRGTYQQQEEVENLLLNEICQRNIWDKAAADKKGLAAFYAK 264 Query: 398 GT 399 Sbjct: 265 NK 266 >gi|90577547|ref|ZP_01233358.1| peptidyl-prolyl cis-trans isomerase C [Vibrio angustum S14] gi|90440633|gb|EAS65813.1| peptidyl-prolyl cis-trans isomerase C [Vibrio angustum S14] Length = 108 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 18/100 (18%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 ++ +++ AD+ + LKKG KF +LA++ S LG F K + Sbjct: 6 HALHILVKHKELADDILEHLKKGAKFQELAKKHSTCPSGKKGGDLGEFRKGAMV-PQFDK 64 Query: 328 SIF---------SLAKK-----GDFTPVIHGSFGYVIAHV 353 ++F +L KK G + FG+ I V Sbjct: 65 AVFSGKAISTSEALKKKNNNLRGLIPEPVKTKFGWHIIKV 104 >gi|162449966|ref|YP_001612333.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce 56'] gi|161160548|emb|CAN91853.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce 56'] Length = 302 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 74/202 (36%), Gaps = 14/202 (6%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---F 296 E ++++E++A YE +++++ SP + + +++ + EA+ LKK F Sbjct: 84 AEAAASSPVTDEEVRAYYEAHRDRFSSPAMVALWRILVATRGEAEAILAELKKDPSPQRF 143 Query: 297 IQLAEEQGKSLS----DISLGSFSKEYI-------PDVSLADSIFSLAKKGDFTPVIHGS 345 ++A E+ + LG + + D L + + + Sbjct: 144 KEIAREKSLDKATSMRGGDLGFVASDGTTSEPGLKVDPGLLSAAAGVKDAELVPEPVPEG 203 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 G+ + + + S ++ I + KA +VK+ RL G + + + Sbjct: 204 DGFAVLWRRQSRKPVSRSLEQEAPSIRQILAHGKAEAQVKQLLDRLRAQDVSGHAPEIVD 263 Query: 406 RREKIVSIDLPLVDFAGKDVKG 427 + + DL G G Sbjct: 264 LIDVTSTGDLQPKRRPGTLASG 285 >gi|78486057|ref|YP_391982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira crunogena XCL-2] gi|78364343|gb|ABB42308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira crunogena XCL-2] Length = 93 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLAD 327 T ++ + +A E + +++G F +A+ S S LG F + Sbjct: 5 TARHILVETEAKALELKKQIEEGADFADVAKANSSCPSSRSGGDLGQFGPGMMV-PEFDK 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358 FS A G I FGY + V++ Sbjct: 64 VCFS-ADVGSLEGPIKTQFGYHLVEVTDRTE 93 >gi|119355885|ref|YP_910529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides DSM 266] gi|119353234|gb|ABL64105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides DSM 266] Length = 438 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 104/310 (33%), Gaps = 37/310 (11%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS-PEIRTVEQLV------FPNQ 280 E K I ++ I ++++E Y +K++ E+ + Q++ ++ Sbjct: 134 ELKDQQLIETLRKKQLAGITVTHEETVDFYRNHKQQLPQVSELVGLSQILKYPDLPQGSK 193 Query: 281 KEADE----AFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSL 332 A LK G F A + + LG K + S D+ F L Sbjct: 194 DAALAQMKIVQAELKAGADFAATARKYSQDPGSAKLGGDLGYVQKGELV-RSFEDAAF-L 251 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFT------VSFQEVKKDIANQMRITKASEKVKE 386 K G + ++ +GY I KP+ +++ + K D + ++ Sbjct: 252 LKDGKISDIVETRYGYHIIQRLEKKPNAVHLRHILIAYDQSKTD-------EPGTVQLLS 304 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 K + LA + +++++ + L GK + + + ++ G Sbjct: 305 RIKS--DVLAGRATFADMAKKYSDDPVSGKLGGVILSGGSGKTLLPVASLRPQMMQIVGS 362 Query: 447 D---DPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 +S + G+ Q+ IP LE+ +++ K E + Sbjct: 363 LRNIGDISDPQKIDFQKGNLFYGIFQLNAKIPVHQLNLEQDYASLEELALEAKKQERYNE 422 Query: 502 KANQLVLEYS 511 +QL E Sbjct: 423 WLSQLKKEVL 432 >gi|254715206|ref|ZP_05177017.1| Chaperone surA precursor [Brucella ceti M13/05/1] gi|261216924|ref|ZP_05931205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M13/05/1] gi|260922013|gb|EEX88581.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti M13/05/1] Length = 311 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|323495831|ref|ZP_08100899.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio sinaloensis DSM 21326] gi|323319047|gb|EGA71990.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio sinaloensis DSM 21326] Length = 431 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 108/333 (32%), Gaps = 83/333 (24%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L +++ + L+ Q E IG+ D R+ I K+N + + +A E Sbjct: 68 LRQQVTEKLIIDTLQQQEAERIGIRIDDNRLNEAIEEI----AKNNNQTIEQLSDSIAAE 123 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 G+ E+ + K ++ T+ V R ++ + ++ Sbjct: 124 GLEYSEFREQVRKEIAATEARNALV-------------------RRRINILPAEVDNLAN 164 Query: 205 I-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 I A +NA + +I +I V++ + I Sbjct: 165 ILAQETNATVQ---------------YKIGHIQLRVNDGDDASAI--------------- 194 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYI 320 +++A E L G F +A K+L G KE + Sbjct: 195 ----------------EQQAKEIVAKLNNGSDFATMAYTYSKGPKALQGGDWGWMRKEEM 238 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--M 375 P AD + + KG G+ I + ++K TV+ EV I + Sbjct: 239 P-TIFADQV-GVQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIRPTVIL 296 Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 +++ E R++ + + E++R+ Sbjct: 297 SDDGVQKELNEIIARIQ---SGEATFGELARQY 326 >gi|300022454|ref|YP_003755065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] gi|299524275|gb|ADJ22744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium denitrificans ATCC 51888] Length = 292 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 18/158 (11%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK------------F 296 YE N+ ++ S + + ++ +++ D ++ + ++ F Sbjct: 117 DEATSHRFYENNRRRFTSAALYEADHILIGARRDDDASYAAARERATSIAAVLATEPDQF 176 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +LA S SLG + + ++ SLA G+ + + +G + + Sbjct: 177 AELARAWSACPSATLGGSLGQIAPGDTTE-EFEAALVSLA-PGEISGPVETRYGVHVIRL 234 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + T+ F+ V++ I + + Y L Sbjct: 235 NRRIEGNTLPFEAVRERIEAYL-DDHVRRQATAQYIAL 271 >gi|254691283|ref|ZP_05154537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 6 str. 870] gi|256256468|ref|ZP_05462004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 9 str. C68] gi|260756889|ref|ZP_05869237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 6 str. 870] gi|260882704|ref|ZP_05894318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 9 str. C68] gi|297249827|ref|ZP_06933528.1| peptidyl-prolyl cis-trans isomerase C [Brucella abortus bv. 5 str. B3196] gi|260676997|gb|EEX63818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 6 str. 870] gi|260872232|gb|EEX79301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 9 str. C68] gi|297173696|gb|EFH33060.1| peptidyl-prolyl cis-trans isomerase C [Brucella abortus bv. 5 str. B3196] Length = 311 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|167820136|ref|ZP_02451816.1| rotamase [Burkholderia pseudomallei 91] Length = 180 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L + +A L +G F +L Sbjct: 25 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVSGEADALRLRNQLIQGASFGEL 83 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 84 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 141 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 142 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 176 >gi|146299709|ref|YP_001194300.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium johnsoniae UW101] gi|146154127|gb|ABQ04981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium johnsoniae UW101] Length = 475 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 127/384 (33%), Gaps = 65/384 (16%) Query: 157 KMLSRTDVVGMFV-------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-- 207 K ++R ++G + ++ S ++ D R E R ++Y++ + + + Sbjct: 85 KDITRCQMLGKLLEDKLYAHQAIQDSIIVSDAEVRGMMEER-LNYMIQQVGDINKVVEYY 143 Query: 208 --PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK-NKEKY 264 S +F E K S + + K +EI+ +E++ + K K++ Sbjct: 144 KKSSVEEFKTYFAD-----ILKEQKLASEMR---DKIVKDVEITPEEVRNFFRKIPKDEL 195 Query: 265 FS-PEIRTVEQLVFP---NQKEADEAFQSLKK-------GKKFIQLAEEQGKSLSDISLG 313 + V Q+V ++++ + L G F A + G Sbjct: 196 PTFGAEMEVAQIVVEPKVSKEDKQKVIDRLNAIRKDVLEGSSFATKAVLYSQDPGSAPNG 255 Query: 314 S---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-------- 362 +++ D FSL ++G+ + +FGY I V IK Sbjct: 256 GYYKMTRKTPFVKEFKDVAFSL-QEGEISAPFETTFGYHIIMVDKIKGQEVELRHILIAP 314 Query: 363 -----SFQEVKKDIANQMRITKASEKVKEDYKRLE----EFLALGTSMDEISRREKIVSI 413 + +E K+ IAN + E D R E E A G ++ + ++ Sbjct: 315 TVSESALKEAKERIANIRAKIVSKELTFADAARTESDEKETRANGGTLINPNTQD----- 369 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 + D + +++ + DD K + + +I E Sbjct: 370 --TRFELTKMDPTLYGQVSNLKDDEVSQPLLNTDDKGKKTYKLITVTN-----RIDEHTA 422 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAE 497 + ++ K+ + A+ Sbjct: 423 DYAKDYTKIKELALKEKQINAIAK 446 >gi|294782675|ref|ZP_06748001.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA] gi|294481316|gb|EFG29091.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA] Length = 563 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 69/485 (14%), Positives = 158/485 (32%), Gaps = 70/485 (14%) Query: 58 NSWKQELGMISQKIGFVVN-SERARSVGLDKKILDNLVSGATLDQFIEDI---GLEADHG 113 + + + +G + GL K L N + L Q + + Sbjct: 106 SEVNAQYEELESSMGDKEQFRRMLQVQGLTKDSLKNKIEENLLMQKTREEFSKNINPTDE 165 Query: 114 RVWGE--IARSPLFHGKDN------KFSHDVFVSRL--AREGIN----EKEYIDHYTK-- 157 + + P +D + + F L AR+ + EY + K Sbjct: 166 EINAYMSLYSIPSDKKEDAISLYKMEKGEEAFKLALIKARKEMQIKDLAPEYENLVEKVS 225 Query: 158 ---------MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208 L ++ F+ + + ++ + + I + Sbjct: 226 YEEDGFKVTNLDLAKIMATFMINQKATKEQAEELAKNMLAKQ----IKVAKMAKEKGVKV 281 Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + + + + Y + + ++I+ ++ EL++ + NK +Y PE Sbjct: 282 NEEL----------DLMSQLQ---EYTVGLSEKLREEIKPTDAELESFFNANKSRYNIPE 328 Query: 269 IRTVEQLVFP----------NQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFS 316 + + + EA++ L + F + + G + + LG+F Sbjct: 329 TADAKLIFITVKSTKEDDAVAKAEAEKLLAELT-PENFSEKGKSIGNNQDIIYQDLGTFG 387 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 K+ + +++ + VI FGY + +V + S + + + Sbjct: 388 KQAMVK-EFEEALKDVPSNTVINKVIKTKFGYHVVYVKKNDNNQQWSAEHI---LIVPYP 443 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 K E+ E +L+ + GT ++ KI + D G G + Y Sbjct: 444 SEKTVEEKLEKLNKLKADIEAGT----VALNNKIDEDVIQSFDAKGITPDGI-IPDFIYS 498 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 ++ V+ + PL+K + + + Q + + A + + +VKKD+ ++ Sbjct: 499 PEIAKAVY--ETPLNKVGIINPNKATIIVFQKTKEVKAEEANFSNLKEEVKKDYINIQVG 556 Query: 497 EEVSS 501 E +S Sbjct: 557 EYMSK 561 Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 71/625 (11%), Positives = 184/625 (29%), Gaps = 81/625 (12%) Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINS 59 + RK + ++ + V+ + G S + + + + + + + Sbjct: 3 IRKFRKQMKPFII-VLTVIFILSLAYGGYESFRTSRANKKAQEAMLLNKDYIQKIDIERA 61 Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 ++ +E +D ++++ + + ++ V Sbjct: 62 KQEVSRAY---------AETVDKDIVDIIAFNDVIDKKLTLDLAKSLKVKVPSSEVN--- 109 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 A+ + F L +G+ + + + L F + P++ + Sbjct: 110 AQYEELESSMG--DKEQFRRMLQVQGLTKDSLKNKIEENLLMQKTREEFSKNINPTDEEI 167 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 + Y ++ + + L + ++ + APEY+ + + V Sbjct: 168 NAYMSLYSIPSDKKEDAISLYKMEKGEEAFKLALIKARKEMQIKDLAPEYENL---VEKV 224 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-LKKGKKFIQ 298 +E +++N +L + + +++A+E ++ L K K + Sbjct: 225 SYEEDGFKVTNLDLAKI----MATFMINQK--------ATKEQAEELAKNMLAKQIKVAK 272 Query: 299 LAEEQGKSLSD------------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 +A+E+G +++ + L +E I F A K + Sbjct: 273 MAKEKGVKVNEELDLMSQLQEYTVGLSEKLREEIKPTDAELESFFNANKSRYNIPETADA 332 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 + V + K V+ E + ++ E E K I Sbjct: 333 KLIFITVKSTKEDDAVAKAEAE-----KLLAELTPENFSEKGK-------------SIGN 374 Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466 + I+ DL + +E ++ +V + + Sbjct: 375 NQDIIYQDLGTFGKQAMVKEFEEALKDVPSNTVINKVIKTKFGYHVVYVKKNDNNQQWSA 434 Query: 467 QIKESIP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525 + +P ++ +EE K + KA+ + K D+ ++ Sbjct: 435 EHILIVPYPSEKTVEE------------KLEKLNKLKADIEAGTVALNNKIDEDVIQSFD 482 Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585 A +T + I + + + V+ P+ V N + +VF+ T Sbjct: 483 AKGITPDGI----IPDFIYSPEIAKAVYETPLNKVGIIN-PNKATIIVFQKTKEVKAEEA 537 Query: 586 EKDKFISYLTQMMNKDLLDSVIAYL 610 + + + ++ L Sbjct: 538 NFSNLKEEVKKDYINIQVGEYMSKL 562 >gi|167616017|ref|ZP_02384652.1| peptidylprolyl isomerase [Burkholderia thailandensis Bt4] gi|257142572|ref|ZP_05590834.1| peptidylprolyl isomerase [Burkholderia thailandensis E264] Length = 265 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKF 296 + ++D+ + Y + ++ +I ++F ++L + F Sbjct: 89 QPTHDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARALAAPQTF 148 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E S +LG + ++F + G +++ FG+ I + Sbjct: 149 ETLARELSNCPSSAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 207 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V DIA + + K + Y + LA G ++ ++ Sbjct: 208 ERRVPGDPVPFDAVAADIAAFLA-QRVRHKAIQQYVTI---LASGARIEGVA 255 >gi|288928286|ref|ZP_06422133.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317 str. F0108] gi|288331120|gb|EFC69704.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317 str. F0108] Length = 713 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 72/595 (12%), Positives = 177/595 (29%), Gaps = 80/595 (13%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATL 99 V V +K+ F + I + G +N E+ + + + V + Sbjct: 43 QQVGEVNGEKISVQEFQKMVDEYAEAIKMQQGQDNLNDEQLNQ--VKDMVWTSYVQNKLV 100 Query: 100 DQFIEDIGLEADHGRVWG--------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151 ++ +++GL + + ++P + + +F LA EY Sbjct: 101 EKEAKELGLTVTDQEMQNVLNQGTNPMLMQTPFVNQQTGRFDASSLKKFLA-------EY 153 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 + T K+ + + Y L + + Sbjct: 154 KNQQTTNPQMAQQYESIY------KFWTFIEKQLRTQLLAQKYQSLLAHCLLSNPV---E 204 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK-KIEISNDELQAEYEKNKEKYFS-PEI 269 + E+ E +I F E K+++S +L+A+YE+ K ++ E Sbjct: 205 AKMAFKEEN-------EESQIQLAAFPYSSIEDSKVQVSESDLKAKYEELKPRFKQYVET 257 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-----------LGSFSKE 318 R ++ + + ++ LKK +F +E ++ + LG + Sbjct: 258 RDIKYIDIQVEASPED-KAGLKK--QFADYTKELTEAADPTNVVRKSSSLVNYLGLPVGK 314 Query: 319 YIPDVSLADSIFSLAKKGDFTPVI-HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 +A + S++ + PV + + + V + Sbjct: 315 DAYPSDIAARLDSMSVGSVYGPVENKQDNTLNLVKLV----AKVQLPDSV--EYRQIQVG 368 Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 E + + L G + ++++ + + + Y Sbjct: 369 GATPEAAHKTADSIYTALTNGADFEALAKKYGQTGEKTWMTTRQYQMAPSMDKDTKDYIN 428 Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQ------IKESIPARD-RKLEEVLTDVKKDW 490 L ++ + L G+ + + + A R ++ +K + Sbjct: 429 SL------NTMGVNDIKNITLAQGNIILQVLNRKGMVTKYQAAVVKRTIDFSKETYRKAY 482 Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550 + ++ A+ +V K G ++ K++ S I + + Sbjct: 483 NQFSSFVSANATADAVVKNAVKNGYRLQE-AKDVTTSQHNLAGIRST--------REALK 533 Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605 +F V E G + + V + P+ + S + +M+ +++ Sbjct: 534 WLFDAKEGSVSPL-YECGDNNHLLLVILDHINPMGYRSLTDSQVKEMVKAEVIKD 587 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 109/356 (30%), Gaps = 29/356 (8%) Query: 267 PEIRTVEQLVF------PNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKE 318 P+ Q+ K AD + +L G F LA++ G++ + ++ + Sbjct: 357 PDSVEYRQIQVGGATPEAAHKTADSIYTALTNGADFEALAKKYGQTGEKTWMTTRQYQMA 416 Query: 319 YIPDVSLADSIFSLAKKG--DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 D D I SL G D + G +I V N K T V K Sbjct: 417 PSMDKDTKDYINSLNTMGVNDIKNITLAQ-GNIILQVLNRKGMVTKYQAAVVKR-----T 470 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 I + E ++ Y + F++ + D + + L +A I Sbjct: 471 IDFSKETYRKAYNQFSSFVSANATADAVVKNAVKNGYRLQEAKDV--TTSQHNLAGIRST 528 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKDWKTVK 494 + L +F + + + V + P R L +V VK + K Sbjct: 529 REALKWLFDAKEGSVSPLYECGDNNHLLLVILDHINPMGYRSLTDSQVKEMVKAEVIKDK 588 Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 AE++ +K N V + + + + + V + Sbjct: 589 KAEQILAKLNG-VTSIAAAKAKGAVVTPVNQVTFASPVFLTATGASEPALS----GAVAA 643 Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606 P++ +F+VT + P +E + + + ++ + Sbjct: 644 TAKGAFDKTPVKGNAGVYMFQVTGRTMRPVKFNAKETEMRLRQRAMQYAGNFMNQL 699 >gi|209964864|ref|YP_002297779.1| peptidyl-prolyl cis-trans isomerase family protein, putative [Rhodospirillum centenum SW] gi|209958330|gb|ACI98966.1| peptidyl-prolyl cis-trans isomerase family protein, putative [Rhodospirillum centenum SW] Length = 433 Score = 73.9 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 58/454 (12%), Positives = 126/454 (27%), Gaps = 95/454 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + + S +N + L G E + L ++L L+ Sbjct: 44 ERAAALVNEEVISMSDLMNRLQMALS----SSGLPDTPETRQR--LLPQVLRLLIDEVLQ 97 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + + + + + N+ S F L G+ Sbjct: 98 IQEARRLEIRVTEQDIDRALENL----AQQNRLSLGEFQRLLDASGVPVAS--------- 144 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 R ++ SV + L R + S+ + E+ Sbjct: 145 LRQQLLA------------------------SVAWSRLVQRRIRPTVSVSDDEVQAQLER 180 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K N PEY +S I V + + E+S Sbjct: 181 IKANAGKPEYL-VSEIFLAVDDDANEAEVS------------------------------ 209 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336 + AD + + G F +A + +S LG + + + +L ++ L + G Sbjct: 210 -RLADRLVEQIAGGANFGAVARQFSQSAGAFTGGDLGWLQQGQL-EQALDTAVQQL-QPG 266 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM--RITKASEKVKEDYKRLEEF 394 F+ I G GY I + + + + +++ + + E E +++ + Sbjct: 267 QFSRPIRGVNGYHILWLRDQRAVAAGNPADIQVAVGQLVLPADPANPEAGLEAARQIAQE 326 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 A ++ ++R G + + + + G + Sbjct: 327 AASCDALSAAAQR------------IPGAQQGQAPLTRLGDLPAEISSIVGALGVGTPTQ 374 Query: 455 TVALPDGSYMWVQIKESIPA-RDRKLEEVLTDVK 487 G + + +P ++V + Sbjct: 375 PFLTDRGIMILMVCDRMVPEGSIPPADQVRDAIA 408 >gi|307132747|ref|YP_003884763.1| peptidyl-prolyl cis-trans isomerase ppiD [Dickeya dadantii 3937] gi|306530276|gb|ADN00207.1| Peptidyl-prolyl cis-trans isomerase ppiD [Dickeya dadantii 3937] Length = 270 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 40/236 (16%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV--DYI 195 L + + + + L+ T V L+ + + + Sbjct: 42 RQLLRQLALEQAVMEAARRQSLTATSAQLQQVAQQLAQELVSAGFSADEQQAIVLHHSLM 101 Query: 196 VLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254 L V A AD P A + +W+ ++ D +R PE + ++L V + Sbjct: 102 ELQLASVGAQADEPQPAEVRRWYRQHADRFRRPEQRLTRHLLLTVDGNRPSV-------- 153 Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDIS 311 +Q+ A Q F LA+ +L Sbjct: 154 ------------------------DQQVAGMLRQLRADPDGFASLAQRHSHCPTALEGGL 189 Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 +G S+ + +L +F+LA G+ + + G + I+P+ + E Sbjct: 190 MGWVSRGLLF-PALEHCLFALA-AGELSEPVETELGLHLLRCEAIRPAAPLPEAEA 243 >gi|148284345|ref|YP_001248435.1| putative peptidylprolyl isomerase [Orientia tsutsugamushi str. Boryong] gi|146739784|emb|CAM79651.1| putative peptidylprolyl isomerase [Orientia tsutsugamushi str. Boryong] Length = 343 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 6/148 (4%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 +K + ++ Y+K F+ E + ++ +Q++A E L KG+ F +LA+ Sbjct: 133 FKKNVPALKEDEYPFYQKQ----FASEKIKISHILLSSQEKAKEVKDKLSKGESFEKLAK 188 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 E+ G +++ L + IF++ + G P+ + + +++ P Sbjct: 189 EESLDKETKENGGLVEQWFFQGDLPEPIFAMQEGGVSEPMQLSKTAWQLIKLNSKVP-HI 247 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389 S +E+ + +R K + + + Sbjct: 248 PSKEEI-NEYTFNLRAEKYAAALYDAAN 274 >gi|117921645|ref|YP_870837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. ANA-3] gi|117613977|gb|ABK49431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. ANA-3] Length = 434 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 49/383 (12%), Positives = 120/383 (31%), Gaps = 73/383 (19%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N L ++++ L+ Q + IGL ++ I K Sbjct: 56 RAANQSLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KM 111 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFEN-- 189 + ++ EG++ +Y + + ++ ++ ++ S + + E Sbjct: 112 TVAQMQQKIESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGM 171 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQ---WFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246 + V+Y + + + +PS+ L + ++ E R + I K + Sbjct: 172 KDVEY-QIGHILIDVPNNPSSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEG 230 Query: 247 EISN----DELQAEYEK--------------------------NKEKYFSPEIRTV--EQ 274 I + +E+ + + + + EI V Sbjct: 231 GIWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARH 290 Query: 275 LVFP-----NQKEADEAFQ----SLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIP 321 ++ ++ A + ++ G+ KF LA + + + G +++ I Sbjct: 291 ILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIY 350 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 A ++ SL+ + + G+ I + + K D +Q +A Sbjct: 351 VPEFAQTLNSLS-PDQISEPFRTTHGWHITQLEERR----------KTDATDQFNTNRAH 399 Query: 382 EKV------KEDYKRLEEFLALG 398 + + +E L+E A Sbjct: 400 QLIFRRKFNEELQNWLDEMRADA 422 Score = 64.6 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 31/303 (10%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQA + + + L+ Sbjct: 75 RLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVA-------QMQQKIESEGLSF 127 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 YR + I+ + +++I++S E+ + +E+ + + Sbjct: 128 ------SQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHI 181 Query: 276 VF------------PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD- 322 + + K A+ + LK G+ F + A + G + I + Sbjct: 182 LIDVPNNPSSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEM 241 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKAS 381 +L + + AKKGD I G+ I + + + T +EV+ I + + Sbjct: 242 PTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSE 301 Query: 382 EKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 ++ K ++ L++ + ++++R+ S D G+ + +P Q L Sbjct: 302 DRAKAMLEQFLKQIRSGEAKFEDLARQY---SEDPGSATKGGELGWAEPSIYVPEFAQTL 358 Query: 441 FRV 443 + Sbjct: 359 NSL 361 >gi|307133009|ref|YP_003885025.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Dickeya dadantii 3937] gi|306530538|gb|ADN00469.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Dickeya dadantii 3937] Length = 93 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +++A + L+KG F QLA++ S LG F K + ++F Sbjct: 9 HILVDTEQQATDILAQLEKGADFQQLAKKHSTCPSKHNGGDLGEFRKGDMV-PDFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SCELLKP---FGPVKTQFGYHIIKV 89 >gi|306845597|ref|ZP_07478166.1| Chaperone surA precursor [Brucella sp. BO1] gi|306273918|gb|EFM55745.1| Chaperone surA precursor [Brucella sp. BO1] Length = 311 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + + + S DE Q YE N+ ++ + I ++ EA Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTNAPILEASHILIAADPADQEAR 174 Query: 288 QS------------LKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 + + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FG+ I + + F V IA Sbjct: 234 TPGETTANPIESRFGFHIVRLDRRVEGEELPFDYVADKIA 273 >gi|242016524|ref|XP_002428837.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative [Pediculus humanus corporis] gi|212513573|gb|EEB16099.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative [Pediculus humanus corporis] Length = 121 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA LK+G KF ++A++ + + LG ++ + D+ Sbjct: 29 KVRHILCEKQGKCLEALGKLKEGMKFNEVAQQYSEDKARAGGDLGWMTRGSMVGP-FQDA 87 Query: 329 IFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357 F+L + P + FGY I V K Sbjct: 88 AFALPVSSLSSPVFTDPPVKTKFGYHIIMVEGKK 121 >gi|254301623|ref|ZP_04969067.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 406e] gi|157810736|gb|EDO87906.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 406e] Length = 220 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 65 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 123 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 124 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 181 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 182 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 216 >gi|85711793|ref|ZP_01042849.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] gi|85694408|gb|EAQ32350.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] Length = 432 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 106/315 (33%), Gaps = 51/315 (16%) Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172 ++ ++ +S F + L + E+ ++ G+ Sbjct: 48 EQLIKQVKQSENFSSANAPSDK-----VLRTQA-TERLIQQELQLQMAERM-------GI 94 Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 S LDQA ++R + L + + W +R I Sbjct: 95 EVSEAQLDQAISRIAQDRGMSVDELRENTINSG--------QSW-----PAFREQIKTEI 141 Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------------PNQ 280 + ++++ ++ E++ ++ SP + Q++ + Sbjct: 142 ITSQVERAAVQRRVSVTPQEVENLVNLIEQNDASPTEYRLRQILIGVDSDAPNEKQEAAK 201 Query: 281 KEADEAFQSLKKGKKFIQLA---EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + A L++G+ F QLA +L LG ++ +P +L + KG+ Sbjct: 202 RRAQAVIDRLEEGEDFSQLAIRSSSGSNALDGGDLGWMTENSMP--TLFAEVVKGKSKGE 259 Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLE 392 I G+ I V++ + V QEVK I + KA E + + +++ Sbjct: 260 IIGPIRSGVGFHILQVADKRGEQVVEVQEVKARHILIKPSVILSDNKAKEMLAQFREQI- 318 Query: 393 EFLALGTSMDEISRR 407 L+ + E+++ Sbjct: 319 --LSGEKTFAELAKE 331 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 45/389 (11%), Positives = 111/389 (28%), Gaps = 57/389 (14%) Query: 60 WKQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + ++ + +++ N A + L + + L+ Q E +G+E ++ Sbjct: 43 LESQIEQLIKQVKQSENFSSANAPSDKVLRTQATERLIQQELQLQMAERMGIEVSEAQLD 102 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT-KMLSRTDVVGMFVGGMRPS 175 I+R +D S D G + + + ++++ + + Sbjct: 103 QAISRI----AQDRGMSVDELRENTINSGQSWPAFREQIKTEIITSQVERAAVQRRVSVT 158 Query: 176 NL-------LLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFE--KYKDNYR 225 L++Q E R ++ +++ + + + + +++ Sbjct: 159 PQEVENLVNLIEQNDASPTEYRLRQILIGVDSDAPNEKQEAAKRRAQAVIDRLEEGEDFS 218 Query: 226 APEYKRIS---------YILFDVHEKEKKIEI-----SNDELQAEY------------EK 259 + S + S E+ +K Sbjct: 219 QLAIRSSSGSNALDGGDLGWMTENSMPTLFAEVVKGKSKGEIIGPIRSGVGFHILQVADK 278 Query: 260 NKEKYFSPEIRTVEQLVFP-----NQKEADEAFQS-----LKKGKKFIQLAEEQGKSLSD 309 E+ + ++ + +A E L K F +LA+E Sbjct: 279 RGEQVVEVQEVKARHILIKPSVILSDNKAKEMLAQFREQILSGEKTFAELAKEHSADPGS 338 Query: 310 ISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 S G PD + S +KG + FG+ I V++ + + Sbjct: 339 ASRGGDLGWSRPDRYAEEFKQRVSTLEKGVISEPFRTQFGWHIVEVTDRRTLDATQ-ESK 397 Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + K E+V + + + Sbjct: 398 RDKAYQMLFSRKYREEVDTWRQEMRDRAY 426 >gi|149191632|ref|ZP_01869876.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1] gi|148834532|gb|EDL51525.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1] Length = 419 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 111/371 (29%), Gaps = 86/371 (23%) Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 V + S ++ K + + E + + ++ILD L+ Q + Sbjct: 19 VNDGVILQSDIDSATKTLTANARKN-----DQELPSADIIQEQILDKLILEKLQLQEADR 73 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 IG+ D R+ + K+N + + + EG+ + + R + Sbjct: 74 IGVRIDDNRLESTLNDI----AKNNNQTIEQLRQTVREEGLTWEAF---------REQIR 120 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 + ++ + E Sbjct: 121 DEIAASEARNAMVRQRINILPAEV-----------------------------DNLAELL 151 Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 A E S+ + + + ++ E ++V+ +++A + Sbjct: 152 AKE--------------------SDATVTYKIRHIQLRFNDGEDKSVQ------EQQAKD 185 Query: 286 AFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 LK G+ F +A K +L G KE +P AD I + KG Sbjct: 186 LVARLKSGEDFATMAYTYSKGPKALEGGDWGWMRKEEMP-TIFADQI-KMQTKGTIIGPF 243 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLEEFLAL 397 G+ I + ++K TVS EV I + ++ +++ + Sbjct: 244 RSGVGFHILKIEDVKGLETVSVTEVNARHILIKPTVILSDEGVQRELNNIIAKVQ---SG 300 Query: 398 GTSMDEISRRE 408 ++ E++ + Sbjct: 301 ESTFAEMAEQY 311 Score = 42.7 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 14/99 (14%) Query: 272 VEQLVFP---------NQKEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYIP 321 ++ Q+E + ++ G+ F ++AE+ + G P Sbjct: 270 ARHILIKPTVILSDEGVQRELNNIIAKVQSGESTFAEMAEQYSQDPGSAVQGGELGYQTP 329 Query: 322 D---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + + +L G + G+ I V + + Sbjct: 330 ELYVPEFKHQVETLP-IGQISKPFKTVHGWHIVEVLDRR 367 >gi|50121865|ref|YP_051032.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043] gi|49612391|emb|CAG75841.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043] Length = 265 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 239 VHEKEKKIEI-SNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-QKEADEAFQSL------ 290 + +++ + ++ E++ Y ++ ++ PE R L+ + +++ + L Sbjct: 97 LASISEQVAVPTSAEVEQWYRRHAARFCRPEQRLTRHLLLTTGEDDSEAISRQLLALRRQ 156 Query: 291 --KKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345 F LAE + +L LG S+ + SL ++F+L + G+ + +I Sbjct: 157 LQSDTAAFATLAERHSQCPTALEGGLLGWVSRGLLF-TSLDQALFTLHE-GELSAIIETD 214 Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ + I+P ++ ++ + + + + E+ ++ +L Sbjct: 215 IGWHLLLCEAIRPETPMAQEDALAKAYDHLLLQRQKEQQRQWLVQL 260 >gi|170725378|ref|YP_001759404.1| SurA domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810725|gb|ACA85309.1| SurA domain [Shewanella woodyi ATCC 51908] Length = 434 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 34/345 (9%), Positives = 103/345 (29%), Gaps = 65/345 (18%) Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131 G + S+ A L ++++ L+ Q + IGL ++ I Sbjct: 59 GQALPSDSA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNIAKEQNLT-- 112 Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENR 190 D ++A EG++ +Y + + ++ ++ ++ S ++ + E + Sbjct: 113 --VDQMQLKIAEEGMSWNQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVK-MIEEK 169 Query: 191 SVDYIVL-------------NNRHVPAIADPSNAVLTQWFEKYKDNYRAPE--------- 228 + + N+ + + + + VL + + ++R Sbjct: 170 GLQEVEFQIGHILIEVPSSPNSEQLASASKRAETVLKRVKDG--ADFRRTAIAASSGPKA 227 Query: 229 -------YKRISYILFDVHEKEKKIEISNDE----------LQAEYEKNKEKYFSPEIRT 271 Y ++ + E + + + + + + Sbjct: 228 LEGGVWDYMNVNEMPTLFAEVLGNAKPGDVIGPIRSGAGFHIIKVLDARGLQTKEIDEVR 287 Query: 272 VEQLVFP-----NQKEADEAFQSLKK-----GKKFIQLAEEQGKSLSDISLGS---FSKE 318 ++ +++ A K F LA + + + G ++ Sbjct: 288 SRHILIKPSPILSEERAKAMLDKFVKEIRTGDADFAALARQYSEDPGSGAKGGELGWADP 347 Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 + + A ++ +L + + + S G+ I + + + Sbjct: 348 SVYVPAFAQTLNAL-ELNEISEPFRSSHGWHIVQLEERRKTDATD 391 Score = 64.2 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 80/237 (33%), Gaps = 18/237 (7%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ- 280 + YR + I+ + +++I++S E+ + + +EK + ++ Sbjct: 128 NQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKMIEEKGLQEVEFQIGHILIEVPS 187 Query: 281 -----------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 K A+ + +K G F + A + G + + + +L Sbjct: 188 SPNSEQLASASKRAETVLKRVKDGADFRRTAIAASSGPKALEGGVWDYMNVNEMPTLFAE 247 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKED 387 + AK GD I G+ I V + + T EV+ I + + E+ K Sbjct: 248 VLGNAKPGDVIGPIRSGAGFHIIKVLDARGLQTKEIDEVRSRHILIKPSPILSEERAKAM 307 Query: 388 YKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443 + ++E ++R+ S D G+ +P Q L + Sbjct: 308 LDKFVKEIRTGDADFAALARQY---SEDPGSGAKGGELGWADPSVYVPAFAQTLNAL 361 >gi|115371844|ref|ZP_01459157.1| peptidyl-prolyl cis-trans isomerase D [Stigmatella aurantiaca DW4/3-1] gi|115371079|gb|EAU70001.1| peptidyl-prolyl cis-trans isomerase D [Stigmatella aurantiaca DW4/3-1] Length = 334 Score = 73.5 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 76/230 (33%), Gaps = 25/230 (10%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAF 287 + + L +EK ++ +++ A YE NK ++ SP L+ P + AD A Sbjct: 108 KRAMVQRLLHKEFEEKAAPVTPEDIAAYYEMNKAEFVSPARWRYSHLLVPAPQGSADRAA 167 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---------------------VSLA 326 + + + Q PD +A Sbjct: 168 KKKLAQALLEKARKLQPLDFDGFDALGGEASGNPDTKPASADTHLVTAEELKERLGPEVA 227 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + L + GD + V+ G+ + +++++P V + +++ + V Sbjct: 228 AAAGKLQRVGDTSAVVESPKGFHLLKLTDLRPERNQPLDAVSSMLRSRIARERRDASVSA 287 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 +L+E T + + EK+ + + V G A P + Sbjct: 288 YTVKLQEQAQFKT---DTAALEKLQVNIQAPQEASSGPVPGYLPAPQPVR 334 >gi|239818232|ref|YP_002947142.1| SurA domain protein [Variovorax paradoxus S110] gi|239804809|gb|ACS21876.1| SurA domain protein [Variovorax paradoxus S110] Length = 469 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 51/403 (12%), Positives = 117/403 (29%), Gaps = 69/403 (17%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + +++ I +ER L + +L+ L+S Q Sbjct: 66 VALVNSEPITNTEVQ-------SRVTRLIRENAEAERVPRAELTRLVLERLISERAQLQL 118 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 ++ G++ D + + N+ S + R+ EGI+++E+ + L T Sbjct: 119 AKENGIKVDEVAIDQAEQTV----ARQNQISVEELRRRVVAEGISQREFRNDLRDQLLLT 174 Query: 163 DVVGM-FVGGMRPSNLLLDQ----AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 + ++ S+ D+ + ++ ++ I L + V + + A + Sbjct: 175 RLRDREVESKVKISDAEADEYLRDQRNAPTKDAALQNINLAHLLVAVPENATEAQVATLQ 234 Query: 218 ----------------------------------------EKYKDNYRAPEYKRISYILF 237 ++Y + + Sbjct: 235 QRAQGLAQRARAGEDFAKLVQENSDSPDRANGGAVGMRTADRYPSLFVEATQSTPVNGIA 294 Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------- 290 + +A+ ++R + L P + A Q Sbjct: 295 GPIRSGAGFHVLKVLAKAQLGATDATVTQTQVRHILLLNDPKRTTAQAVAQLAEFKRRLQ 354 Query: 291 KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347 + F LA + + S LG S+ +++ LA G + + FG Sbjct: 355 ARTADFAGLARDNSQDASAKEGGDLGW-SRPGQFVPEFEEAMDRLA-PGQISDPVVSRFG 412 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 + V + S E ++ +R + E + Sbjct: 413 VHLIQVVGRRESKLTQ-AEQREAARAVLREQRVEEAFSTWVQE 454 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 46/368 (12%), Positives = 103/368 (27%), Gaps = 39/368 (10%) Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220 R + G++ + +DQA++ + L R V Sbjct: 113 RAQLQLAKENGIKVDEVAIDQAEQTVARQNQISVEELRRRVVAEGIS------------- 159 Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE---KYFSPEIRTVEQLVF 277 + +R ++ E E K++IS+ E + K + + + L+ Sbjct: 160 QREFRNDLRDQLLLTRLRDREVESKVKISDAEADEYLRDQRNAPTKDAALQNINLAHLLV 219 Query: 278 PNQKEADEA------------FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS- 324 + A EA Q + G+ F +L +E S + G+ Sbjct: 220 AVPENATEAQVATLQQRAQGLAQRARAGEDFAKLVQENSDSPDRANGGAVGMRTADRYPS 279 Query: 325 -LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 ++ S G I G+ + V + + + + + Sbjct: 280 LFVEATQSTPVNG-IAGPIRSGAGFHVLKVLAKAQLGATDATVTQTQVRHILLLNDPKRT 338 Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 + +L EF L + + + S D G + +P E+ + R Sbjct: 339 TAQAVAQLAEFKRRLQARTADFAGLARDNSQDASA-KEGGDLGWSRPGQFVPEFEEAMDR 397 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 + + + +Q+ ++ E + + + E S+ Sbjct: 398 L-----APGQISDPVVSRFGVHLIQVVGRRESKL-TQAEQREAARAVLREQRVEEAFSTW 451 Query: 503 ANQLVLEY 510 + Sbjct: 452 VQETRARA 459 >gi|110636616|ref|YP_676823.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC 33406] gi|110279297|gb|ABG57483.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Cytophaga hutchinsonii ATCC 33406] Length = 452 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 83/246 (33%), Gaps = 34/246 (13%) Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA---KRFYFENRSVD 193 ++ + + + + T + + + + M + ++D + + Sbjct: 50 YLQFMR----SPEAQMMQTTDDIKCRVLESLIINKMLLARAVMDSVTVEREIINQQIDRR 105 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA---PEYKRISYILFDVHEKEKKIEISN 250 + A L ++ K D + P+ + + I+ Sbjct: 106 M------DYFIQQFGTVAKLESYYNKSIDQLKEELYPQIRDQMVTQKMQDNITAGVTITP 159 Query: 251 DELQAEYEK---NKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQ 298 ++++ Y+ + YFS E+ + + P +++ +E Q + G+ F + Sbjct: 160 NDVKKFYKALPADSLPYFSSEVEVGQIIRLPEINRQDQLKFKQKLEEIRQRVASGEDFCR 219 Query: 299 LAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA++ + +G F K + ++ S + G + VI +GY I + Sbjct: 220 LAKQFSQDPVSAKNCGEIGFFKKGELVPEY--EAAASKLQPGQTSGVIETQYGYHIVQLI 277 Query: 355 NIKPSF 360 + + Sbjct: 278 ERRGAE 283 Score = 42.3 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 60/437 (13%), Positives = 119/437 (27%), Gaps = 84/437 (19%) Query: 21 LFVPFLIWGLSDALFSVSG---SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77 LFV F+ +++ F + V V Q V S S+ Q + ++ + Sbjct: 10 LFVFFVF--VTNYHFCAAQQVIDKIVAKVDNQIVLKSEVEISYLQFMRSPEAQMMQTTDD 67 Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARSPLFHGKDNKFSH-- 134 + ++L++L+ L + + + +I R F + + Sbjct: 68 -------IKCRVLESLIINKMLLARAVMDSVTVEREIINQQIDRRMDYFIQQFGTVAKLE 120 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS---------NLLLDQAKRF 185 + + + ++E + + G+ + L D F Sbjct: 121 SYYNKSIDQL---KEELYPQIRDQMVTQKMQDNITAGVTITPNDVKKFYKALPADSLPYF 177 Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY--KRISYILFDVHEKE 243 E I L + Q E+ + + E + D + Sbjct: 178 SSEVEVGQIIRLPEINRQDQLK-----FKQKLEEIRQRVASGEDFCRLAKQFSQDPVSAK 232 Query: 244 KKIEI---SNDELQAEYEKNKEKYFSP------------------EIRTVE----QLVFP 278 EI EL EYE K E R E ++ Sbjct: 233 NCGEIGFFKKGELVPEYEAAASKLQPGQTSGVIETQYGYHIVQLIERRGAEYNTRHILIK 292 Query: 279 NQKEADEA-----------FQSLKKGKKFIQLAEEQGKSLSDISLGSF------SKEYIP 321 + + + LK F + A+ G I Sbjct: 293 PASSSKDLIYPTLFLDSLRLEILKDSISFAKAAKNYSSDKQTAFNGGMLSDPESGSSRIA 352 Query: 322 DVSLADSIFSL---AKKGDFTPVIH-----GSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373 L +IF + K G+ + G+ I + N P+ + ++ + I + Sbjct: 353 QEDLPPAIFFVIDTMKIGEISMPAKFTMEDGTEAVRIVYFKNKIPAHQANLKDDYQKIYS 412 Query: 374 QMRITKASEKVKEDYKR 390 K + V E + + Sbjct: 413 AALEEKKNNAVNEWFDK 429 >gi|324513446|gb|ADY45525.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Ascaris suum] Length = 125 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q +A EA + LK G KF ++A + S LG ++ + + D+ Sbjct: 33 KVRHILCEKQSKALEAMEKLKSGMKFNEVAANYSEDKARSGGDLGWMTRGSMVG-AFQDA 91 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L K P + FGY I V K Sbjct: 92 AFALPTSTVDKPVYTDPPVKTQFGYHIIMVEGKK 125 >gi|254498443|ref|ZP_05111173.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella drancourtii LLAP12] gi|254352330|gb|EET11135.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella drancourtii LLAP12] Length = 421 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 50/398 (12%), Positives = 112/398 (28%), Gaps = 77/398 (19%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S + + + + + K++L +L+ Sbjct: 15 DKVVAVVNNSVITASELDKQVAMAKKQLLAQ-RIQLPPDSV----VRKQVLQHLIDVDLQ 69 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + G+ D + I R + + ++G+ EY ++ K + Sbjct: 70 LQMAKQHGISVDDTELTQAIERIAAANHAT----LSQMREEIVKQGMGWNEYRENIRKEM 125 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 +++ + V +N + Q+ Sbjct: 126 ILSNLQQ---------------------------------KAVGHDVMITNEQVEQYL-- 150 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 K P + E + +++ Sbjct: 151 -KTEGDLPVDRTHLTYHLQNIVIPLNDEPTPAQMK-----------------------KA 186 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 Q A + S+KKG F ++A E+ +L LG +P++ A + ++ K G Sbjct: 187 QAIAAQILISIKKGADFNRVAVEKSTGDFALDSGDLGERHLAELPEL-FAKEVVNM-KVG 244 Query: 337 DFTPVIHGSFGYVIAHVSNI---KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 + G + + I + V+ V+ I + E VK+ + + Sbjct: 245 QVAGPLRAGNGLQLIKLVAIGGEQQQHMVTLTHVR-HILLKPDANMLPEDVKKQVNNIYQ 303 Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431 L G +++++ + G G+ V Sbjct: 304 QLKAGKDFAKMAKQYSLDPGSAVKGGDLGWVTPGELVP 341 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 16/134 (11%) Query: 271 TVEQLVFP---------NQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSK 317 V ++ +K+ + +Q LK GK F ++A+ + G ++ LG + Sbjct: 277 HVRHILLKPDANMLPEDVKKQVNNIYQQLKAGKDFAKMAKQYSLDPGSAVKGGDLGWVTP 336 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 + ++ LA + + FG+ + V K + K+ I + Sbjct: 337 GELV-PEFEKTMNKLALN-QVSQPVKTQFGWHLIEVLGRKQQDDST-AFKKQQIRQFLHQ 393 Query: 378 TKASEKVKEDYKRL 391 K +E V+ + + Sbjct: 394 RKFAEAVQNWQQHI 407 >gi|104781902|ref|YP_608400.1| peptidylprolyl isomerase [Pseudomonas entomophila L48] gi|95110889|emb|CAK15605.1| putative Peptidylprolyl isomerase [Pseudomonas entomophila L48] Length = 318 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 13/178 (7%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + L V + S+ EL+ YE K P + Q+ + D+ Sbjct: 123 EQIVLRDYLESVSKVPDDYP-SDAELKQAYEAGKAGLQLPARYRLSQIFLRVENPKDDEA 181 Query: 288 QSLK----------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKK 335 + F LA E + + G + L + + S K Sbjct: 182 VRKQAQALAKQAQASDADFAALAREHSQDAGTAANGGDTGLQALAQLLPEVRGVVSRLKA 241 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G + + + GY I + +P+ +F EV + +R + + K + + + Sbjct: 242 GTVSEPVQSAAGYHIVKLVEQQPARAATFDEVAPRLRQLLRAQRQEQVAKAYVEGMFD 299 >gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae SmR1] gi|124483574|emb|CAM32660.1| Parvulin-like peptidyl-prolyl [Herbaspirillum seropedicae] gi|300072826|gb|ADJ62225.1| parvulin-like peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 117/417 (28%), Gaps = 63/417 (15%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 S +V V + + + + +S + + ++ +++++ ++ Sbjct: 90 DSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLV-----RQLVERMIVERAQ 144 Query: 100 DQFIEDIGLEADHGRVWGEIA--------RSPLFHG--KDNKFSHDVFVSRLAREGI--- 146 Q ++ G+ D + + F + ++ F + RE + Sbjct: 145 AQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYASFREEIRREILSQR 204 Query: 147 ------------NEKEYIDHYTKMLS----RTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190 E E ++ + R ++ + P N DQ + Sbjct: 205 LREREVDNKVVVTESEVDNYLAAEANAGGQRQELDIAQILIRVPENATPDQLAQRRERAE 264 Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI---- 246 V + A + D P + L V + + Sbjct: 265 DVLRQLKTGADFAKTAAAYSDASDAL--SGGDLGWRPADRLPQLFLDGVAKLQDGQVSGL 322 Query: 247 -------EISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK-- 292 I + + + + + V ++ EA LK+ Sbjct: 323 LKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAKRKLTELKERL 382 Query: 293 ---GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 F +LA+ LS LG ++ L K G+ + I F Sbjct: 383 DHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTV-PEFERAMDQL-KPGEVSQPIETPF 440 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403 GY + V K S + ++ +R K E ++ +++ + + DE Sbjct: 441 GYHLIQVVERKTDDA-SKERARQAARQAIRERKIDEATEDWMRQIRDRAYVEYRNDE 496 Score = 66.9 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 45/379 (11%), Positives = 109/379 (28%), Gaps = 48/379 (12%) Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 +++ R V + + +++D A R D L+ + Sbjct: 129 QLVRQLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAE--- 185 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 ++R + I E + K+ ++ E+ + + Sbjct: 186 -----GMNYASFREEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQELDI 240 Query: 273 EQLVFPN------------QKEADEAFQSLKKGKKFIQ---LAEEQGKSLSDISLGSFSK 317 Q++ ++ A++ + LK G F + + +LS LG Sbjct: 241 AQILIRVPENATPDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWRPA 300 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-------- 369 + +P + D + L + G + ++ G+ I + + + Sbjct: 301 DRLPQL-FLDGVAKL-QDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHI 358 Query: 370 --DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427 + + +A K+ E +RL+ + +E+++ + G G Sbjct: 359 LIKVNQVVTAAEAKRKLTELKERLD---HGSATFEELAKLYS-NDLSASKGGDLGWVYPG 414 Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487 V L P + P G ++ ++ + E + Sbjct: 415 DTVPEFERAMDQLK-------PGEVSQPIETPFGYHLIQVVERKTDDASK--ERARQAAR 465 Query: 488 KDWKTVKTAEEVSSKANQL 506 + + K E Q+ Sbjct: 466 QAIRERKIDEATEDWMRQI 484 >gi|73538831|ref|YP_299198.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] gi|72122168|gb|AAZ64354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha JMP134] Length = 250 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 38/223 (17%) Query: 206 ADPSNAVLTQWFEKYKD---------------NYRAPEYKRISYI-------LFDVHEKE 243 + ++ + + ++++D E +R+ + Sbjct: 8 VELTDDDIEREMDQHRDARNPAHMATVSAILRRLMRTEAERLGIAGGDTDDDALALALLA 67 Query: 244 KKIEISNDEL---QAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLK--K 292 + + + + + Y+ +++ E VE ++F P + A Q+L K Sbjct: 68 HEAPVPDADESSCRRHYDSRPDRFREGEWVEVEHILFQVTPRVPLDALREVALQTLALIK 127 Query: 293 G--KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGY 348 G F A+ S G + + + ++FS +G ++ FG Sbjct: 128 GDPSSFASHAQALSNCPSGAGGGRLGRVFRGETAPEFERAVFSAPVQGLLPQLVETRFGL 187 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I V + + F V+ DIA+ + A ++ + Y L Sbjct: 188 HIVRVLDRCDGTRLPFDMVRADIAHALTAA-ARDRAWKQYASL 229 >gi|149197709|ref|ZP_01874759.1| hypothetical protein LNTAR_20788 [Lentisphaera araneosa HTCC2155] gi|149139279|gb|EDM27682.1| hypothetical protein LNTAR_20788 [Lentisphaera araneosa HTCC2155] Length = 767 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 123/354 (34%), Gaps = 34/354 (9%) Query: 213 LTQWF--EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 L ++ E K + P ++S + ++ +S++E++A+Y+KN EKY +I+ Sbjct: 343 LQAFYNNEDNKRQFLIPRSLQLSLVSLSPSTLYSEVAVSDEEIKADYDKNIEKYKVAQIK 402 Query: 271 TVEQ-LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLAD 327 + E + + K A +LK K + + + + + E++ + Sbjct: 403 STEYAITAKDDKSLAAAETTLKAIKDLVDSKAKNLEEELKKNADIKKTDTEWLSENENNK 462 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 S+F +AK G T + + + + F E K+I+ + KAS K + Sbjct: 463 SLFVIAK-GQTTAIEANELKFTFTLIKEKRDE--TPFAEASKEISASITHAKASTKARLA 519 Query: 388 YKRLEEFLALGTS--------MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP----- 434 ++L+ F++ + E + + PL +G + + Sbjct: 520 AEKLQSFISSNRGNENFFNLFLTEAASHQFNERKLQPLTPQSGNQQSMQLAMQLLQQGYT 579 Query: 435 ----YKEQLLFRVFGKDDPLSKDHTVA----LPDGSYMWVQIKESIPARDRKLEEVLTDV 486 + +Q +V LS V+ +G ++ ++ +P+ E + + Sbjct: 580 PPGGFSQQAFAQVGQMLSALSASRPVSDPSVTENGDIQYLLVEREVPSSYVPFERAKSSI 639 Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR-----DIGKNLGASLLTTNQIN 535 + +KA+ E K + + Q Sbjct: 640 AFQVANAQGKVLAKAKADSSKTELEKAEDTGAFFKANSFAEEQSITPENKAQFT 693 >gi|294650562|ref|ZP_06727919.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter haemolyticus ATCC 19194] gi|292823559|gb|EFF82405.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter haemolyticus ATCC 19194] Length = 437 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 50/426 (11%), Positives = 118/426 (27%), Gaps = 72/426 (16%) Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66 K + L L S F+ V V + S + + Sbjct: 4 KHFQHIFRATVLAALISS------SMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQ 57 Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA------ 120 + + V + + ++LD L+ + ++ G++ D + + Sbjct: 58 LKAQNQTVPPKQYLQM-----QVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQS 112 Query: 121 ---RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV------------ 165 F K + + + + R I E I + + + Sbjct: 113 GSNSLSAFQQKLDAIAPGTYENL--RNRIAEDLAIGRLRQQQVMSRIKISDHDVENFLKS 170 Query: 166 --GMFVGGMRP-------SNLLLDQAKRFYFENR-----SVDYIVLNNRHVPAIADPSNA 211 G G + S ++ ++ E R S D ++++ A Sbjct: 171 PEGQAALGTQVHVLHMRISGTNNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGA 230 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE--LQAEYEKNKEKYFSPEI 269 + ++ P V + + + + L+ K ++ Sbjct: 231 DM-----GFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQ 285 Query: 270 RTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFS 316 ++ ++ D + +K G+ F LA + G + +LG + Sbjct: 286 YKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFSTLAATFSNDPGSARDGGNLGWVN 345 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 + + G + FG+ I V++ + E ++ +A Q+ Sbjct: 346 ASVMV-PEFEK-VMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTK--EAQERMARQIL 401 Query: 377 ITKASE 382 + E Sbjct: 402 GERQFE 407 Score = 40.4 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 61/185 (32%), Gaps = 9/185 (4%) Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEAD 284 ++ + +I+IS+ +++ + + + V + QK A+ Sbjct: 142 DLAIGRLRQQQVMSRIKISDHDVENFLKSPEGQAALGTQVHVLHMRISGTNNNEVQKVAE 201 Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIH 343 E +SL ++ + + + ++ + + + G T +++ Sbjct: 202 EVRRSLATSNDPKAISSKLSTGTVTVDGADMGFRALSEIPTELAARVTPLQVGQTTGLVN 261 Query: 344 GSFGYVIAHVSNIKPSFTVSFQ-EVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSM 401 G + + K + + + K I Q +S++ K+ L + G Sbjct: 262 VRDGTHVLKLLERKQNDQRALVPQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDF 321 Query: 402 DEISR 406 ++ Sbjct: 322 STLAA 326 >gi|167577892|ref|ZP_02370766.1| peptidylprolyl isomerase [Burkholderia thailandensis TXDOH] Length = 265 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKF 296 + ++D+ + Y + ++ +I ++F ++ + F Sbjct: 89 QPTHDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARARAAPQTF 148 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E S +LG + ++F + G +++ FG+ I + Sbjct: 149 ETLARELSNCPSSAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 207 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V DIA + + K + Y + LA G ++ ++ Sbjct: 208 ERRVPGDPVPFDAVAADIAAFLA-QRVRHKAIQQYVTI---LASGARIEGVA 255 >gi|116495203|ref|YP_806937.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC 334] gi|191638713|ref|YP_001987879.1| Protein maturation protease (Peptidylprolyl isomerase) [Lactobacillus casei BL23] gi|227534778|ref|ZP_03964827.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632085|ref|ZP_04675116.1| protein maturation protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105353|gb|ABJ70495.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC 334] gi|190713015|emb|CAQ67021.1| Protein maturation protease (Peptidylprolyl isomerase) [Lactobacillus casei BL23] gi|227187534|gb|EEI67601.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526550|gb|EEQ65551.1| protein maturation protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382753|gb|AEA54229.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei LC2W] gi|327385940|gb|AEA57414.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei BD-II] Length = 300 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 32/235 (13%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V G + D K+ ++ IVL S+ + F K Sbjct: 25 VANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKALEQQYPNKVSDKKVNSQFNTLKKQ 84 Query: 224 Y-----RAPEY---------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 Y E +I L+ + + + ++ A+++K + K Sbjct: 85 YGSSFDTTLEQNGYTESSFKDQIRTTLYSEVALKALKKPTEKQIAAQWKKYQPKIT---- 140 Query: 270 RTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIP 321 V+ ++ + EA + +K K F LA++ G + + Sbjct: 141 --VQHILVKTEDEAKQIISDYQKDPTEKNFEALAKKNSIDTGTKDKGGKLTAFDNTDTSL 198 Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 D + + F L K GD T + +GY + V ++ + +E KKD+ NQ+ Sbjct: 199 DSTFKKAAFKLTKAGDITTTPVKTQYGYHVIRVISV--GKKGTMKEHKKDLENQL 251 >gi|310824216|ref|YP_003956574.1| ppic-type peptidyl-prolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] gi|309397288|gb|ADO74747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1] Length = 329 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 76/230 (33%), Gaps = 25/230 (10%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAF 287 + + L +EK ++ +++ A YE NK ++ SP L+ P + AD A Sbjct: 103 KRAMVQRLLHKEFEEKAAPVTPEDIAAYYEMNKAEFVSPARWRYSHLLVPAPQGSADRAA 162 Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---------------------VSLA 326 + + + Q PD +A Sbjct: 163 KKKLAQALLEKARKLQPLDFDGFDALGGEASGNPDTKPASADTHLVTAEELKERLGPEVA 222 Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386 + L + GD + V+ G+ + +++++P V + +++ + V Sbjct: 223 AAAGKLQRVGDTSAVVESPKGFHLLKLTDLRPERNQPLDAVSSMLRSRIARERRDASVSA 282 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 +L+E T + + EK+ + + V G A P + Sbjct: 283 YTVKLQEQAQFKT---DTAALEKLQVNIQAPQEASSGPVPGYLPAPQPVR 329 >gi|225025209|ref|ZP_03714401.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC 23834] gi|224941967|gb|EEG23176.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC 23834] Length = 288 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 82/244 (33%), Gaps = 10/244 (4%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR-HVPAIADPSNAVLTQWF 217 + G + + + + LN I + + Sbjct: 43 IINEQSNGQVTDSPELRENIARRLVTRELMIQESRRLRLNESPEFKQIIERARTDARTSG 102 Query: 218 EKYKDNYRAP-EYKRISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 E K +R E + + + ++ ++Q Y++ +Y + + ++ Sbjct: 103 EDRKPTFRQDWETFEGNVTAQALVAHILRSNPVTEAQVQQAYQEITNRYRGTQEVKLGEI 162 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD-------S 328 + N+ A +A L++G++F +A + + G S + P L + + Sbjct: 163 ILNNRDNAQKAVADLRRGRRFTDVARQYTIDTPSRANGGISPTFTPLKDLEEGAPMVYNA 222 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + SL + + + + I ++ +P F ++K I ++ +++ Y Sbjct: 223 VKSLGQGKFTETPVESNGIFAIFYMEAKRPVRVPPFAQLKPQIQQDLQNLLIEQEIARLY 282 Query: 389 KRLE 392 ++ Sbjct: 283 QQAN 286 Score = 41.5 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 12/164 (7%) Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRIT---KASEKVKEDYKRLEEFLAL---GTSMD 402 I + + + + ++I N+ R T K E + + ++ +A G Sbjct: 128 HILRSNPVTEAQVQ---QAYQEITNRYRGTQEVKLGEIILNNRDNAQKAVADLRRGRRFT 184 Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462 +++R+ +ID P G + + +++ T +G Sbjct: 185 DVARQY---TIDTPSRANGGISPTFTPLKDLEEGAPMVYNAVKSLGQGKFTETPVESNGI 241 Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + ++ P R ++ +++D + + +E++ Q Sbjct: 242 FAIFYMEAKRPVRVPPFAQLKPQIQQDLQNLLIEQEIARLYQQA 285 >gi|254194298|ref|ZP_04900730.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei S13] gi|169651049|gb|EDS83742.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei S13] Length = 229 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L + +A L +G F +L Sbjct: 74 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVSGEADALRLRNQLIQGASFGEL 132 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 133 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 190 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 191 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 225 >gi|194364448|ref|YP_002027058.1| SurA domain [Stenotrophomonas maltophilia R551-3] gi|194347252|gb|ACF50375.1| SurA domain [Stenotrophomonas maltophilia R551-3] Length = 447 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 42/407 (10%), Positives = 108/407 (26%), Gaps = 70/407 (17%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V + S + + + + L +++L+ LV Sbjct: 33 DRIAAVVDEDVILQSELQRAIANIKAQYVGRENQLPPEDV-----LSRQVLERLVLVKLQ 87 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + G+ + + + N + D RLA +GI+ ++ + Sbjct: 88 VARAQGSGIRVGDQELNQAMNAI----AQQNGSTLDALRQRLAHDGIDFNDFRASVRDEI 143 Query: 160 SRTDVVGMFVGG-MRPSNLLLD----QAKRFYFENRSVDYIVLNNRHVPAIADPS----N 210 + + F + S +D Q + ++ A + Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILIAVPDGANADQIATGQKKA 203 Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE-ISNDELQAEYEKNKEKYFSPEI 269 + +K + ++ A + Y + + S DE+ + + EK + E+ Sbjct: 204 DGVKALLDKGELDFNA---AAVRYSDSPNALEGGDLGWRSLDEIPQAFAQMMEKMKAGEV 260 Query: 270 ------------------RTVE--------------QLVF---------PNQKEADEAFQ 288 R ++ + + D Sbjct: 261 VGPIRGPSGFQLLKLVEVRDASAAAGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRA 320 Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 + G F +A+E + + LG F + + + + + G + Sbjct: 321 RIAGGADFQTVAKESSEDSNSKGQGGDLGWFPADAF-GPAFGQQVAGI-QDGGVSQPFRT 378 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G+ I + + + + + + K ++ + L Sbjct: 379 DAGWHILQRVATRQTDVTN-DNQRAQVRETIGRRKLEDEYNRFLQEL 424 Score = 51.1 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 55/393 (13%), Positives = 116/393 (29%), Gaps = 51/393 (12%) Query: 142 AREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198 + ++ + +L + V G+R + L+QA + L Sbjct: 63 RENQLPPEDVLSRQVLERLVLVKLQVARAQGSGIRVGDQELNQAMNAIAQQNGSTLDALR 122 Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258 R D ++ +RA I+ + +I +S E+ A + Sbjct: 123 QRLAHDGIDFND-------------FRASVRDEITVQRLRQSFAQSRISVSEGEVDAALK 169 Query: 259 KNKEKYFSPEIRTVEQLVFPN------------QKEADEAFQSLKKGK-KFIQLA---EE 302 + + ++ QK+AD L KG+ F A + Sbjct: 170 QQA---TVGNQYHLAHILIAVPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSD 226 Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 +L LG S + IP + A + + K G+ I G G+ + + ++ + Sbjct: 227 SPNALEGGDLGWRSLDEIP-QAFAQMMEKM-KAGEVVGPIRGPSGFQLLKLVEVRDASAA 284 Query: 363 SFQEVKKD-----IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 + + I ++ + K L +A G +++ Sbjct: 285 AGANTVTEYHGRHILVRVDDHQTDAAAKAKIDTLRARIAGGADFQTVAKESS------ED 338 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 + G+ A + +V G D G ++ ++ D Sbjct: 339 SNSKGQGGDLGWFPADAFGPAFGQQVAGIQDG-GVSQPFRTDAGWHILQRVA--TRQTDV 395 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + V++ K +E + +L E Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEA 428 >gi|293602043|ref|ZP_06684498.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292819573|gb|EFF78599.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 93 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + ++ + + +E +++ G F Q+A+E S +LG+F + Sbjct: 2 AQASARHILVSTEAKCNELKTAIENGADFAQVAKENSSCPSSRDGGNLGTFGPGQMVK-E 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A G + FGY + V++ + Sbjct: 61 FDTVVFS-APVGVVQGPVKTQFGYHLVEVTSRQ 92 >gi|225628752|ref|ZP_03786786.1| Chaperone surA precursor [Brucella ceti str. Cudo] gi|260167067|ref|ZP_05753878.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella sp. F5/99] gi|261756460|ref|ZP_06000169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99] gi|225616598|gb|EEH13646.1| Chaperone surA precursor [Brucella ceti str. Cudo] gi|261736444|gb|EEY24440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99] Length = 311 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 115 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 174 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 175 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 233 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 234 TPGETTANPIENRFGYHIVRLDRRVEGEELPFDYVADKIA 273 >gi|126445541|ref|YP_001062970.1| rotamase [Burkholderia pseudomallei 668] gi|126225032|gb|ABN88537.1| peptidylprolyl isomerase [Burkholderia pseudomallei 668] Length = 220 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L P + +A L +G F +L Sbjct: 65 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVPGEADALRLRNQLIQGASFGEL 123 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + D + + I ++ K G F+ I GS GY + +V + Sbjct: 124 AMRFSTDASRDSGGDIGWVAQGVLSDEA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 181 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 182 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 216 >gi|83717644|ref|YP_439449.1| peptidylprolyl isomerase [Burkholderia thailandensis E264] gi|83651469|gb|ABC35533.1| peptidylprolyl isomerase [Burkholderia thailandensis E264] Length = 250 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE----------ADEAFQSLKKGKKF 296 + ++D+ + Y + ++ +I ++F ++L + F Sbjct: 74 QPTHDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARALAAPQTF 133 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E S +LG + ++F + G +++ FG+ I + Sbjct: 134 ETLARELSNCPSSAVGGNLGQLLRGDSV-PEFDAAVFDTPELGVLPRLVNTRFGFHIVRI 192 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V DIA + + K + Y + LA G ++ ++ Sbjct: 193 ERRVPGDPVPFDAVAADIAAFLA-QRVRHKAIQQYVTI---LASGARIEGVA 240 >gi|325523743|gb|EGD02000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. TJI49] Length = 261 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296 E + + Y ++ ++ +I ++F ++ A+ A + F Sbjct: 85 EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAEAALADVVAAPDTF 144 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A S SLG + ++F G +++ FG+ I + Sbjct: 145 EAVARASSNCPSAQLGGSLGQLLRGDTV-PEFEAALFDSDGIGVLPKLVNTRFGFHIVRI 203 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P TV F E IA + + E+ Y + LA ++ ++ Sbjct: 204 ERRVPGDTVPFDEAAAQIAAHL-SARVRERAMRQYVAI---LAGKAHLEGVA 251 >gi|260584542|ref|ZP_05852288.1| foldase protein PrsA [Granulicatella elegans ATCC 700633] gi|260157565|gb|EEW92635.1| foldase protein PrsA [Granulicatella elegans ATCC 700633] Length = 316 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 28/172 (16%) Query: 229 YKRISYI-LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283 Y+ Y+ +K S++E+Q Y+ + K + ++ + A Sbjct: 108 YRDTVYLNKLITAAVKKSTTFSDEEVQKYYDSWEPKAT------AQHILIGVSQNASDEE 161 Query: 284 --------DEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFS 331 ++ + LK G F LA+E + +G F + + AD+ + Sbjct: 162 KAEAKKKAEDLIKQLKDGADFDTLAKENSTDKTSAENGGKIGPFKRSDMVK-EFADAAYG 220 Query: 332 LAKKGDFT-PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 L K G+ T + +GY + + + S +V+ + +++ K + Sbjct: 221 L-KVGEITEEPVLTQYGYHVIKLVD--KPEKGSLSDVRSTLEDELLAEKLKD 269 >gi|325268744|ref|ZP_08135372.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM 16608] gi|324988912|gb|EGC20867.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM 16608] Length = 474 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 61/400 (15%), Positives = 125/400 (31%), Gaps = 64/400 (16%) Query: 250 NDELQAEYEKNKEKYFSPE-IRTVEQLVF------------PNQKEADEAFQSLKKGKKF 296 E + Y + + + + ++ ++ AD + +L+KG F Sbjct: 107 EAEARKIYRDTRRQIEANGGLWHCAHILVGMRQRASKEEENAARQLADSLYTALQKGADF 166 Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +LA++ + L K ++ +L K G+ + + FGY I Sbjct: 167 TELAKKYSTDTRSAKNGGDLPGLQKGQTV-AEFEKAMLAL-KPGETSRPVLSPFGYHIIK 224 Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412 + + + ++ DI + + +++ +D +++ Sbjct: 225 MIGHEE--LPPYDSLRADIMQYIEMRGLRDQIISQR------------LDSLAQA----- 265 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV---QIK 469 GKEV ++ L + KD L K DG M + Sbjct: 266 -------------GGKEVTQEQILDRKLAELEEKDADL-KHLVREYHDGLLMVEMSNRTV 311 Query: 470 ESIPARDRK-LEEVLTDVKKDWKTVK-----TAEEVSSKANQLVLEYSKEGKNFRDIGKN 523 A+D LE +K +K + A V +A+ ++ +G F + Sbjct: 312 WDKAAKDETALEAYYRKHRKQYKWAEPRFKGIAYHVKKQADVDAVKACVKGLPFSKWAER 371 Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583 L + I R+ E F + + G Y + V K+ Sbjct: 372 LRDTFNKDGNI-RIRVEKGIFRKGDNALIDREIFGQETAATPVEG--YPIDAVFGKKIKA 428 Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623 + D + +L +A L+ +Y V V ++ Sbjct: 429 PEGLDDVRDLVISDYQGELEKEWVASLRRKYKVVVDKAVL 468 >gi|311106144|ref|YP_003978997.1| PPIC-type PPIASE domain-containing protein 2 [Achromobacter xylosoxidans A8] gi|310760833|gb|ADP16282.1| PPIC-type PPIASE domain protein 2 [Achromobacter xylosoxidans A8] Length = 253 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKFIQLAEEQ 303 + Y+ + +++ + E+ + ++F + A+ L + +F ++A EQ Sbjct: 79 RRYYQMHPQRFMAGELIEADHILFQVTPGVNLDMLRAHANVVLAELLEDPSRFAEVAREQ 138 Query: 304 GKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 S SLG + ++F+L G ++ G I V+ Sbjct: 139 SNCPSAALGGSLGQLGRGDTV-PEFERAVFALPAGGLLPQLLETRHGLHIVRVTRRIEGR 197 Query: 361 TVSFQEVKKDIANQM 375 ++ V IA + Sbjct: 198 MQPYEHVAAQIATAL 212 >gi|257456351|ref|ZP_05621548.1| basic membrane protein [Treponema vincentii ATCC 35580] gi|257446437|gb|EEV21483.1| basic membrane protein [Treponema vincentii ATCC 35580] Length = 360 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 55/407 (13%), Positives = 132/407 (32%), Gaps = 99/407 (24%) Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSV---GRQKVPFSSFINSWKQELGMISQKIG 72 + +++ + I F+ + + V GR + K + + ++IG Sbjct: 5 VITLLIALSLSI-----GAFAQTNLQPIAEVKLTGRAPITLGQL----KTRVSALEKEIG 55 Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW------------GEIA 120 + ++ LD L++ + Q E G++ V +I+ Sbjct: 56 RKMTFAE------RQQTLDGLINERLIVQAAEKDGIKIMDSEVNNYFNEYVSSQLGQQIS 109 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 + K + + A+ G+ E+ L+ Sbjct: 110 EADFAKLIKEKTNMSLDEYMKAQNGMTLAEFKSFLRTQLTAQ------------------ 151 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 + + + + + +I P++ + ++E K ++ P+ ++ ++ Sbjct: 152 ---AYVMQKKQ--------KELQSIPSPTDEQIRSYYEVNKQSFVQPDTVQLFLVVAPKG 200 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI--- 297 +K E + ++Q + N + + +IRT Q E + + G+ F+ Sbjct: 201 DKPSAAEKTIKDIQKKLTANPKD--TADIRTKSQ----------EKNSTYQAGEIFVSKT 248 Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 LA EQ D L IF++ K G+ +P+ + Y V K Sbjct: 249 SLAAEQLGIPMDELL---------------KIFNM-KVGEVSPITETAVNYQCFVVIEKK 292 Query: 358 PSFTVSFQEVKKD---------IANQMRITKASEKVKEDYKRLEEFL 395 + + +V + I + + + +E + + + L Sbjct: 293 DAKILGLSDVVEPGGNVSLYEYIKKMVIMQRQNEALNDALVSVTNEL 339 >gi|224098208|ref|XP_002194667.1| PREDICTED: putative peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 variant 1 [Taeniopygia guttata] Length = 137 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ A EA + LK G++F ++A + + + LG ++ + ++ Sbjct: 45 QVRHILCEKHGRAMEAMEKLKSGQRFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 103 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L K P + FGY I V K Sbjct: 104 AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 137 >gi|167828135|ref|ZP_02459606.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 9] Length = 190 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296 E + D + Y + ++ +I ++F ++EA+ L + + F Sbjct: 14 EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 73 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A E + SLG + ++F G +++ FG+ I + Sbjct: 74 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 132 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V +IA + + K + Y + LA G ++ ++ Sbjct: 133 ERRVPGDPVPFDAVAAEIAAFLA-ERVRHKAIQQYVTI---LASGARIEGVA 180 >gi|296134356|ref|YP_003641603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR] gi|296032934|gb|ADG83702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens JR] Length = 183 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 13/153 (8%) Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76 L ++ + ++ S S V +V + F +K L + + Sbjct: 12 LLGLIILVSIVV---FLTKSNGSSDKVATVNGVSISKQEFNKQYKMILSYYETIARKLSD 68 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136 E GL +++L LV A + Q + + V I++ F G + + Sbjct: 69 KE---KKGLQEEVLARLVDKAIILQEAQKRNIVVTDEEVNKYISQ--KFKG-----NKKL 118 Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 L + K+Y + +R + + Sbjct: 119 QDEYLKERSLTLKDYKEVVRYQKTREKLYDIVT 151 >gi|189183869|ref|YP_001937654.1| protein export protein PrsA precursor [Orientia tsutsugamushi str. Ikeda] gi|189180640|dbj|BAG40420.1| protein export protein PrsA precursor [Orientia tsutsugamushi str. Ikeda] Length = 343 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 6/148 (4%) Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301 +K + ++ Y+K F+ E + ++ +Q++A E L KG+ F +LA+ Sbjct: 133 LKKNVPALKEDEYPFYQKQ----FASEKVKISHILLNSQEKAKEVKDKLSKGESFEKLAK 188 Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 E+ G + + L +SIF++ + G P+ + + +++ P Sbjct: 189 EESLDKETKENGGLVEHWFFQGDLPESIFAMQEGGVSEPMQLSKTAWQLIKLNSKVP-HI 247 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYK 389 S +E+ + +R+ K + + + Sbjct: 248 PSKEEI-NEYTFNIRVKKYARDLYDAAN 274 >gi|88813287|ref|ZP_01128526.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231] gi|88789459|gb|EAR20587.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231] Length = 131 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 5/113 (4%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 V ++ P+++ E + + G+ F LA+ S LG F + + Sbjct: 5 HVRHILVPDEQRCRELKERIDNGEDFATLAKRFSHCPSGHHGGDLGEFGAGRMV-PQFDE 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 F + + FGY + V + +++ +R +A Sbjct: 64 VAFE-GELNKVHGPVRTQFGYHLIEVLSRGERKDSPIAVLRRKCQASLRACQA 115 >gi|219849264|ref|YP_002463697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus aggregans DSM 9485] gi|219543523|gb|ACL25261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus aggregans DSM 9485] Length = 515 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 54/411 (13%), Positives = 111/411 (27%), Gaps = 86/411 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV--------NSERARSVGLDKKILD 91 S V VG + S + W+++ +++I N + A+ ++D Sbjct: 65 SRPVAQVGSITLTRSDY---WREQRLAYARQIYQNFQLLDLFGNNPQIAQQFQGRSIVID 121 Query: 92 NLV--------SGATLDQFIEDI---------GLEADHGRVWGEIARSPLFHGKDNKFSH 134 + + T+ ++I+ G+ + F Sbjct: 122 QQIRTLRRAEINEQTVSEWIDRQIKQRASTEFGITIGDDEIMQTAVADLAF--------- 172 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 +F+ L + V Sbjct: 173 -IFLPALPEPTPTPD-------ANATPVPTVDPSATATPEPTATPSPTPGGPTPTPEPSP 224 Query: 195 IVLNNRHVPAIADPSNAVLT--QWFEKYKDNY--------RAPEYKRISYILFDVHEKEK 244 ++ P A + Q ++ Y PE + + + + + Sbjct: 225 TLIPTSTPVPTPLPEEARVQFDQIVDEIYRRYELELIVSETKPELSKEEFRMALMEQYRD 284 Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------------EADEA 286 ++ + Q E PE T Q++ + A E Sbjct: 285 RLLNERIQAQLVPEDGFTYSTEPERVTARQILIAVKPPAEATPEQIEAAFAAALPTAQEL 344 Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD------VSLADSIFSLAKKG 336 L+ G F LA E+ +GSF + D L + F+L Sbjct: 345 VTQLRNGADFAALAAERSDDPGSRDNGGDIGSFDRNGFADNGATYPPELVAAAFALP-VN 403 Query: 337 DFTPVIHGSFGYVIAHVSN-IKPSFTVSFQEVKKDIANQ-MRITKASEKVK 385 + + FG+ I V+N I PS Q+ + ++ + +A ++ Sbjct: 404 QISDPVRTQFGWHILEVTNRIVPSEADQLQKARTKALDEWIAEQRAKADIR 454 >gi|229589919|ref|YP_002872038.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens SBW25] gi|229361785|emb|CAY48667.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens SBW25] Length = 313 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 87/266 (32%), Gaps = 33/266 (12%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 + N L++ V+ ++Q R E +L+ V Sbjct: 76 QLRGNRGALETWIRSRLAQKAVLEQADAQGWRQRPEVEQQTRAATEQIVFRDYMLSVSQV 135 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 PA PS A L Q ++ K + P R+S I ++ + + Sbjct: 136 PADY-PSAAELQQAYDSGKAQWVTPPLYRVSQIFLAANDPQTLDTV-------------- 180 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 R ++L ++ F LA + + + G S Sbjct: 181 ------RRQAQELS----------RRAQAAPGDFAALATQFSQDTDSAARGGDSGMQPLQ 224 Query: 323 VSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + S S K G + V+ + G+ + ++ +P+ T + E+++ + +R + Sbjct: 225 QLVPEVRSAVSRLKVGAVSDVVQSAAGFHVLKLTGQQPARTATLDELRERLTQALRAQRQ 284 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISR 406 + K + + L E+++ Sbjct: 285 EQIAKAYLEGMLNTATLSIDGAELNK 310 >gi|227114356|ref|ZP_03828012.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 93 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++EA++ L+KG F +LA++ S LG F K + + ++F Sbjct: 9 HILVDTEQEANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY + V Sbjct: 68 SCELLKP---FGPVKTQFGYHVIKV 89 >gi|58337850|ref|YP_194435.1| peptidylprolyl isomerase [Lactobacillus acidophilus NCFM] gi|58255167|gb|AAV43404.1| PrtM precursor [Lactobacillus acidophilus NCFM] Length = 300 Score = 73.1 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 79/238 (33%), Gaps = 28/238 (11%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +++ + L + E + Y S+ + + + Sbjct: 41 ITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------------VSSKKVDKQYN 87 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270 YK Y + + ++ ++ +S L+ + K++ Sbjct: 88 NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKITKKQEQQAWKSYQPKV 147 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325 TV+ ++ + A + + LK GK F LA++ + + S + D + Sbjct: 148 TVQHILVAKKSTAQDIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAF 207 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + F L + + GY + + N P+ F + KK I +++ + A ++ Sbjct: 208 KTAAFKLKTGEVTSTPVKSQSGYHVIKMIN-HPAKGK-FADHKKAIDDEIYASMAQDQ 263 Score = 40.4 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 40/233 (17%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + +STV S K+ + + + K L N++ Sbjct: 26 NSGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 65 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + ++ Sbjct: 66 NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 115 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 L + + + QA + Y +V +I++ + + + + Sbjct: 116 KTNLLSEQALKHIK---KITKKQEQQAWKSYQPKVTVQHILVAKKS-------TAQDIIK 165 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 + K + + + K + +++ L + ++ K + E Sbjct: 166 QLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAFKTAAFKLKTGE 218 >gi|91227110|ref|ZP_01261594.1| survival protein SurA [Vibrio alginolyticus 12G01] gi|269964662|ref|ZP_06178900.1| survival protein SurA [Vibrio alginolyticus 40B] gi|91188762|gb|EAS75049.1| survival protein SurA [Vibrio alginolyticus 12G01] gi|269830561|gb|EEZ84782.1| survival protein SurA [Vibrio alginolyticus 40B] Length = 427 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 122/378 (32%), Gaps = 88/378 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S + K Q G + S L +++++ L+ Sbjct: 25 DKVAVIVNDGVVLQSDIETAMKTLQANARQS-GKSLPSTSV----LKEQVVEKLIIDTLQ 79 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q + IG+ D R+ IA ++N+ S + + + EG++ E+ + K + Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNEQSVEQLAASVESEGLSYPEFREQIRKEI 135 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 + ++ V R ++ + + + +NA + Sbjct: 136 AASEARNALV-------------------RRRINILPAEVDSLAEQLSQETNATVQ---- 172 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I + ++K + + Sbjct: 173 -----------YKIGHIQLRFSDDKEKSAVEAE--------------------------- 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 + A + L +G F ++A K+L G KE +P AD I + K Sbjct: 195 AKALAKK----LNEGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNK 248 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390 G G+ I + ++K TV+ EV I + A +++ E +R Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308 Query: 391 LEEFLALGTSMDEISRRE 408 ++ A + +++ + Sbjct: 309 IK---AGEATFAQLATQY 323 >gi|254470940|ref|ZP_05084343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp. JE062] gi|211960082|gb|EEA95279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp. JE062] Length = 295 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 21/174 (12%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 E+++D E I ++ ++ S DE YE NK ++ S I ++F Sbjct: 91 EQHEDGSETEEDAAIRELI---EQEVDIPSASQDECLRYYENNKSRFSSEPIYEASHILF 147 Query: 278 ---PNQKEADEAFQSLK---------KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPD 322 P+Q A ++ K + F LA E S +LG +K Sbjct: 148 AAGPDQLTARSIAKARAHDVIKLLQDKPETFADLAMEYSACPSKETGGNLGQLTKGSTV- 206 Query: 323 VSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 ++ S+ + G + I FGY I ++ T+ F+ V++ I + Sbjct: 207 PEFEVALQSM-QAGQLSEHPIETKFGYHIIFLNRKIDGNTLPFEHVEETIRAWL 259 >gi|188591256|ref|YP_001795856.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in maturation of outer membrane proteins [Cupriavidus taiwanensis LMG 19424] gi|170938150|emb|CAP63136.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in maturation of outer membrane proteins [Cupriavidus taiwanensis LMG 19424] Length = 489 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 44/321 (13%), Positives = 89/321 (27%), Gaps = 72/321 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + ++ + + G RA +G ++L+ LV Sbjct: 78 DEVVAVVNNSVITRRELLDRADEIESQLRA--GGRPVPARADLLG---EVLERLVMERVQ 132 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q +D G+ V I + N+ + R+ G+ +Y D K Sbjct: 133 TQAAQDAGIRVTDQEVDRAIESV----AQQNQMNAAELRRRVEASGMTWTKYRDELRKQ- 187 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 V I L R V + + + + Sbjct: 188 --------------------------------VQVIRLREREVDSKVQVYDGEIDNY--- 212 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 L + + Y + PE + Q Sbjct: 213 ----------------LAARGGQGAAAGPTE------YNMAQILVRVPENASDAQKQ-AL 249 Query: 280 QKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 + +A+ + + G F QLA+ ++ ++G +P + A+++ L G Sbjct: 250 RAKAEGLLKQAQDGADFAQLAQASSEGPEAAQGGAMGFREIGRLPAL-FANAVVDLQPGG 308 Query: 337 DFTPVIHGSFGYVIAHVSNIK 357 VI + G+ + + + Sbjct: 309 VAPQVIESAAGFHVIKLVAKR 329 >gi|52424684|ref|YP_087821.1| SurA protein [Mannheimia succiniciproducens MBEL55E] gi|52306736|gb|AAU37236.1| SurA protein [Mannheimia succiniciproducens MBEL55E] Length = 353 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 38/358 (10%), Positives = 101/358 (28%), Gaps = 86/358 (24%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V +V + S + ++A + K LD ++ + Sbjct: 65 EQVVATVDGTPILESQLKRAL----------------GKQANNATNRAKALDKIIDDMLV 108 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + +++ + G++ + N ++ + L +GI ++ ++ L Sbjct: 109 QKAVKEANVHISEGQLDKIVENIAA----QNNMTYGQLLDALDYQGIGITKFRNNIRNQL 164 Query: 160 SRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +V + + ++ + E + A + Sbjct: 165 MMAEVRNRSIGKNIDVTREQVETLSKQMLEQ---------AKTQGKKAQVTGTE------ 209 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 ++ +IL ++ + Sbjct: 210 -----------YQVRHILLKLNPLLNDAQ------------------------------- 227 Query: 279 NQKEADEAFQSLKKGK-KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLA 333 + + ++ ++ GK F A++ K + LG ++ I D + I + Sbjct: 228 AKAQLNQICSDIQSGKTTFAAAAKDYSKDYLSGANGGDLG-YAFPEIYDPAFGQVIKA-T 285 Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 KKG + FG+ I V++ + ++ + + + K+ K L Sbjct: 286 KKGVISAPFKTQFGWHILEVTDTRQGDMTE-AAYRQKAYETLVNQQLQDDAKDWVKAL 342 >gi|307720301|ref|YP_003891441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas autotrophica DSM 16294] gi|306978394|gb|ADN08429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas autotrophica DSM 16294] Length = 92 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 T ++ ++++ +E ++ G F ++A+ S LG F + Sbjct: 5 TARHILVDSEEKCNELKTEIENGADFGEVAQANSSCPSSRNGGDLGQFGPGQMV-PEFDK 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++FS G I FGY + V+ Sbjct: 64 AVFS-GDVGVVYGPIQTQFGYHLLEVTGR 91 >gi|332995558|gb|AEF05613.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas sp. SN2] Length = 92 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +KEA + LKKGK F LA+ S LG F + + + D +F Sbjct: 8 HILVKTEKEAFAILEQLKKGKDFSTLAKRHSTCPSGKKGGDLGEFRRGQMVK-AFDDVVF 66 Query: 331 SLAKKGDFTPVIHGSFGYVIAH 352 + + FGY + Sbjct: 67 K-KEVLKVHGPVKTRFGYHLIK 87 >gi|304382089|ref|ZP_07364600.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973] gi|304336687|gb|EFM02912.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973] Length = 473 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 43/376 (11%), Positives = 95/376 (25%), Gaps = 84/376 (22%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + SV + + K ++ M+ Q+ G + D I + L Sbjct: 41 DNNPASVIDEVIWVVGDEPILKSDVEMMRQQ-GEAEGMKFPGDP--DCSIPEQLAVQKLF 97 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLF--HGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 + + I + + ++ + + K+ I + Sbjct: 98 LHQAALDSISVTETEINQSIDQQINYWIQMIGSREKLEEYR----------KQSITQIRQ 147 Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217 L + Q E + + + +F Sbjct: 148 ELH--------------DDFKNRQMIHKMREK------------LVEGISVTPGEVRAYF 181 Query: 218 EKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 + P + I +++I DEL+ Sbjct: 182 RDMPKDSIPFVPTEVEVQIITRTPKIPQEEINRVKDELRQY------------------- 222 Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIF 330 + + KG+ F LA E+ G + L + + D + A F Sbjct: 223 -----------TERVNKGETSFATLARLYSEDPGSARQGGELDYTGRGML-DPAFASVAF 270 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +L + V+ FGY I + + + V+ + + K + Sbjct: 271 NLTDPKKISKVVETEFGYHIIQLIDKRGDKVK----VRHILKKPVVSQKGIDDAILHLDS 326 Query: 391 L-EEFLALGTSMDEIS 405 + + + DE + Sbjct: 327 IGSDIRNGKFTFDEAA 342 >gi|53722410|ref|YP_111395.1| rotamase [Burkholderia pseudomallei K96243] gi|52212824|emb|CAH38856.1| putative rotamase [Burkholderia pseudomallei K96243] Length = 244 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + + + D++ A Y + K K + E + L + +A L +G F +L Sbjct: 89 DDFFSAVSVDEDDIGAAYARIKSKLGTTEY-LLSILTVSGEADALRLRNQLIQGASFGEL 147 Query: 300 AEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A S +G ++ + DV+ + I ++ K G F+ I GS GY + +V + Sbjct: 148 AMRFSTDASRDSGGDIGWVAQGVLSDVA-RNEIDAIVKSG-FSMPIRGSNGYHLLYVRDK 205 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + S ++++ + R+ K + E + Sbjct: 206 RDIVAPSLDQIREQLIELARVDKFERHLCELRGAV 240 >gi|17989299|ref|NP_541932.1| peptidyl-prolyl cis-trans isomerase C [Brucella melitensis bv. 1 str. 16M] gi|256043213|ref|ZP_05446151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. Rev.1] gi|260564427|ref|ZP_05834912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. 16M] gi|265989641|ref|ZP_06102198.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. Rev.1] gi|17985164|gb|AAL54196.1| peptidyl-prolyl cis-trans isomerase c [Brucella melitensis bv. 1 str. 16M] gi|260152070|gb|EEW87163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. 16M] gi|263000310|gb|EEZ13000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str. Rev.1] Length = 271 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-- 285 E + + + + S DE Q YE N+ ++ S I ++ E Sbjct: 75 ETDEDALVRMVIEREVDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETR 134 Query: 286 ----------AFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 A + + F +A E S +LG ++ ++ + Sbjct: 135 DAARQTATRLAAAVIAEPATFASVALEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERM 193 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 I FGY I + + F V IA Sbjct: 194 TPGETTANPIESRFGYHIVRLDRRVEGEELPFDYVADKIA 233 >gi|307319050|ref|ZP_07598480.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306895157|gb|EFN25913.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] Length = 289 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 9/190 (4%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + F V + + E + EL+ YE N+ ++ +P + +Q+ F + AD A + Sbjct: 95 RRLAQKLRFIVEDTAQLAEPTEAELRQLYEANRSRFETPGRLSFKQIYFDPEHRADAAAE 154 Query: 289 ------SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 L + ++ + + A +F++ + G + + Sbjct: 155 AKTVLTELNALGESEPASDRLLLGNRFDDASELAISGMFGADFAREVFAV-EPGQWRGPV 213 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402 +G + V + F+ VK D+ + R K +E ++ L + G ++ Sbjct: 214 KSGYGLHLVFVMQRTATTPKPFETVKGDVLAEWRRLKQTELSRDFLAALRKKY--GVELE 271 Query: 403 EISRREKIVS 412 + + + Sbjct: 272 DGVKAALASA 281 >gi|327292088|ref|XP_003230752.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like, partial [Anolis carolinensis] Length = 116 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ Q A EA + LK G +F ++A + + + LG ++ + ++ Sbjct: 24 KVRHILCEKQSRALEALEKLKAGMRFSEVASQYSEDKARQGGDLGWMARGSMVGP-FQEA 82 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L K P + FGY I V K Sbjct: 83 AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 116 >gi|327184064|gb|AEA32511.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 82/255 (32%), Gaps = 28/255 (10%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 G + + +++ + L + E + Y Sbjct: 25 SNGGSNSTVASYKGGKITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------- 76 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEK 259 S+ + + + YK Y + + ++ ++ +S L+ + Sbjct: 77 -----VSSKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKI 131 Query: 260 NKEKYFS-----PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-- 312 +K++ TV+ ++ + A + LK GK F LA++ + + Sbjct: 132 SKKQEQQVWKSYQPKVTVQHILVAKKSTAQSIIKQLKDGKSFKSLAKKYSLDTATKNKAG 191 Query: 313 ---GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 S + D S + F L + + GY + + + P+ F + KK Sbjct: 192 KLPAFDSTDNTLDSSFKTAAFKLKTGEVTSTPVKSQSGYHVIKMIS-HPAKGK-FADHKK 249 Query: 370 DIANQMRITKASEKV 384 I +++ + A ++ Sbjct: 250 TIDDEIYASMAQDQA 264 Score = 41.1 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 33/168 (19%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + +STV S K+ + + + K L N++ Sbjct: 26 NGGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 65 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + ++ Sbjct: 66 NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 115 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 L + + S Q + Y +V +I++ + Sbjct: 116 KTNLLSEQALKHIK---KISKKQEQQVWKSYQPKVTVQHILVAKKSTA 160 >gi|251787801|ref|YP_003002522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae Ech1591] gi|271502416|ref|YP_003335442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech586] gi|247536422|gb|ACT05043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae Ech1591] gi|270345971|gb|ACZ78736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii Ech586] Length = 93 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +++A + L+KG F QLA++ S LG F K + ++F Sbjct: 9 HILVDTEQQATDILAQLEKGADFQQLAKKHSTCPSKRNGGDLGEFRKGDMV-PDFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SCELLKP---FGPVKTQFGYHIIKV 89 >gi|170748998|ref|YP_001755258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] gi|170655520|gb|ACB24575.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium radiotolerans JCM 2831] Length = 277 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----------ADEAFQSLKKGKK 295 E + +E + + +N ++ SP+I V ++F + + A+ L+ Sbjct: 99 EPTEEECRRYHARNLARFRSPDIFEVSHILFSARADEASSFALARLNAETVIAMLRTDPD 158 Query: 296 -FIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFT-PVIHGSFGYVI 350 F +LA S SLG ++ D++ + G + + +G+ + Sbjct: 159 TFAELARAHSACPSGELGGSLGQVTQGQTT-PEFEDALRRMT-PGQVSTEPVETRYGFHV 216 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 +S T+ F+ V+ IA + + + Y Sbjct: 217 IRLSRHIDGRTLPFEAVRTCIAAYL-SEAVRRRAEAQY 253 >gi|156541530|ref|XP_001603612.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 130 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G+KF ++A + S LG ++ + ++ Sbjct: 38 KVRHILCEKQSKILEAMEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQEA 96 Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357 F+L +PV FGY I V K Sbjct: 97 AFALPISSLGSPVYTDPPVKTKFGYHIIMVEGKK 130 >gi|77458729|ref|YP_348235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1] gi|77382732|gb|ABA74245.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens Pf0-1] Length = 310 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 64/170 (37%), Gaps = 12/170 (7%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLKK-GKKFIQ 298 S ELQ Y+ K + +P + V Q+ + +K+A E + + F Sbjct: 135 SAAELQQAYDAGKANWQTPALYRVSQIFLGVNEPQNLEAVRKQATELSKKAQATSADFAG 194 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 LA+E + G + + + + + K G + + S G+ + ++ Sbjct: 195 LAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGVVARLKVGAVSDPVQSSGGFHVIKLTEQ 254 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 +P+ T + E++ + +R + + + + L E+++ Sbjct: 255 QPARTATLDELRDQLTQALRAQRQEQIAQAYLDGMLNTATLSIDGAELNK 304 Score = 38.8 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 11/125 (8%) Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 + ++ E K+ + A +++ + G + V + Sbjct: 171 LEAVRKQATELSKKAQ---ATSADFAGLAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGV 227 Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496 L D S G + +++ E PAR L+E+ + + + + Sbjct: 228 VARLKVGAVSDPVQSS--------GGFHVIKLTEQQPARTATLDELRDQLTQALRAQRQE 279 Query: 497 EEVSS 501 + + Sbjct: 280 QIAQA 284 Score = 37.3 bits (85), Expect = 8.6, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 50/141 (35%), Gaps = 4/141 (2%) Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 + E V +A +L + +F + K LT + + + V Sbjct: 169 QNLEAVRKQATELSKKAQATSADFAGLAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGVV 228 Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609 + P+++ + V K+T + D+ LTQ + + + + + Sbjct: 229 ARLKVGAVSDPVQSSGGFHVIKLTEQQPARTATLDELRDQLTQALRAQRQEQIAQAYLDG 288 Query: 610 LKSQYSVTVHDNLIQRYLDGE 630 + + ++++ + + L+ + Sbjct: 289 MLNTATLSIDGAELNKVLETK 309 >gi|116492445|ref|YP_804180.1| peptidylprolyl isomerase [Pediococcus pentosaceus ATCC 25745] gi|122266091|sp|Q03GD4|PRSA_PEDPA RecName: Full=Foldase protein prsA; Flags: Precursor gi|116102595|gb|ABJ67738.1| Parvulin-like peptidyl-prolyl isomerase [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 44/231 (19%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 S +T+ + YKD Y + +I L + +ISN + Sbjct: 68 KVSKKTVTKQYNSYKDQYGSSFKSILSSNGMTTSSLKTQIRSNLLLKEAVKANDKISNAD 127 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ E++ + K TV Q++ + A++ + L G F +LA++ S + Sbjct: 128 LKKEWKSYEPK------VTVAQILVSKKSTAEDIIKKLNDGGDFTKLAKQYSTDSSTKNK 181 Query: 313 GSFSKEY-----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF------T 361 G + D S + F L + T + +GY + + N KPS T Sbjct: 182 GGKIAAFDDTNSTLDSSFKKAAFKLDEGKYTTTPVKTEYGYQVIKMIN-KPSKGKMSDHT 240 Query: 362 VSFQE------------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400 +E ++ I ++ + K K+ L+++L S Sbjct: 241 KELKERIWNADMSDSTTLRSVITKVLKKGNVTIKDKDLKNVLDDYLGSSAS 291 Score = 47.3 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 39/192 (20%) Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74 K+ + + + G+ TV + K+ + +S K Sbjct: 3 KVLIGFASIAMAFT------LAACGNKTVATTSGGKITQDEYYSSLKNTTS--------- 47 Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134 K++L ++ L+ + G + V + + + Sbjct: 48 -----------GKQVLQEMIVNKVLE---KQYGDKVSKKTVTK---QYNSYKDQYGS--- 87 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 F S L+ G+ L + + SN L + + Y +V Sbjct: 88 -SFKSILSSNGMTTSSLKTQIRSNLL---LKEAVKANDKISNADLKKEWKSYEPKVTVAQ 143 Query: 195 IVLNNRHVPAIA 206 I+++ + Sbjct: 144 ILVSKKSTAEDI 155 >gi|194292769|ref|YP_002008676.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG 19424] gi|193226673|emb|CAQ72624.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG 19424] Length = 250 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 13/165 (7%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQ 288 + + E + Y+ + ++ E + ++F + A Sbjct: 66 LAREAATPEADEASCRRHYDSHPGRFREGEWVEADHILFQVTPRVPLDALREVAAQTLAL 125 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSF 346 F A S + G + + + ++F+ + G ++ + Sbjct: 126 VRGDPASFAHHARALSNCPSGANGGRLGRVFRGETAPEFERALFAAQQDGVLPQLLESRY 185 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 G I + P + F+ V+ +IA + A ++ + Y L Sbjct: 186 GLHIVRILERCPGTRLPFETVRGEIARALGAA-ARDRAWKQYASL 229 >gi|332878099|ref|ZP_08445829.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684061|gb|EGJ56928.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 459 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 56/512 (10%), Positives = 147/512 (28%), Gaps = 113/512 (22%) Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQELGMISQKIGFVV 75 + FL G+ LF+ S ++ V V G + + S + G + Sbjct: 8 LYAFVFLFEGIQMHLFAQSPNNVVDEVIWVVGDEAILRSDVEAA--------RMDFGANI 59 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 + + + L + +E ++ ++ + Sbjct: 60 SGNPYCVIP------EQLAIQKLFLHQAQLDSVEVENSQISANM--------------EA 99 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 + R G ++++ ++Y K +++ + + E +V + Sbjct: 100 RLNELIMRAG-SKEKLEEYYHKTMTQ----------------IREMMFESLKEQYTVQRV 142 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDE 252 ++ + + A + ++F+ ++ P + + I +++IE E Sbjct: 143 R---ENLTSDIKVTPAEVRRYFKDMPED-SLPWISDQVEVQIITQQPRIPQEEIERVKAE 198 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLA----EEQGKSL 307 L+ + G+ F LA E+ G + Sbjct: 199 LRDY------------------------------TDRVNNGESSFSTLAILYSEDPGSAR 228 Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367 + + + D + A+ FSL + V+ +G+ I + + + V Sbjct: 229 YGGEMDYVGRGEL-DPAFANVAFSLTDPKKISKVVESEYGFHIIQLVDKRGDKVK----V 283 Query: 368 KKDIAN-QMRITKASEKVKEDYKRLEEFLALGTSMDEIS---------RREKIVSIDLPL 417 + + ++ + E+ S +E + R + + ++ Sbjct: 284 RHILRKPKLAQADIDTTMVRMDSIAEDIRKEKYSFEEAATFLSDDKDSRNNRGLMTNVKF 343 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY---MWVQIKESIPA 474 G ++ ++ V + + + V++K I A Sbjct: 344 DQSVGDQIRTSRFQLQELPAEVAKVVSTMKTGEISNPFLMVNSKGKEVCAVVKLKTHIKA 403 Query: 475 RDRKLEE----VLTDVKKDWKTVKTAEEVSSK 502 + E + V + K + + K Sbjct: 404 HRASMSEDFQVLKDVVMAKLQEQKINQWIKDK 435 >gi|311695520|gb|ADP98393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium HP15] Length = 94 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 T ++ ++ + +E ++++ G+ F ++A++ S LGSF + Sbjct: 4 AQATARHILVDSEAKCEELKKAIEGGQDFAEVAKQHSSCPSGRNGGDLGSFGPGQMV-PE 62 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++F+ + + FGY + V++ Sbjct: 63 FDKAVFN-GELNTVIGPVKTQFGYHLLEVTSR 93 >gi|148260583|ref|YP_001234710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum JF-5] gi|326403778|ref|YP_004283860.1| putative peptidylprolyl isomerase [Acidiphilium multivorum AIU301] gi|146402264|gb|ABQ30791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum JF-5] gi|325050640|dbj|BAJ80978.1| putative peptidylprolyl isomerase [Acidiphilium multivorum AIU301] Length = 248 Score = 72.7 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 72/199 (36%), Gaps = 24/199 (12%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E S I + + + ++S + +AE+ +++ ++ +P + ++ +++A Sbjct: 60 ETADESRIRRLLERRIRVADVSEADCRAEFARHRARFRTPPLFEAAHILIAADMSSEDAR 119 Query: 288 QSLKK------------GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS-IFSLAK 334 + F +LA E S G + DV+ + + + Sbjct: 120 APARAEAARLASLLAARPDSFARLAREHSACPSGADGGGLGQITARDVTPEIASMLAAMT 179 Query: 335 KGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 G P + GY + + + + F+ V+ I + +R +A L+ Sbjct: 180 PGTICPVPVPTRHGYHLLRLDRREDGRDLPFEAVRDRIRDHLR-QRAW---------LDA 229 Query: 394 FLALGTSMDEISRREKIVS 412 A ++ ++S E+ Sbjct: 230 ARAYAATLTDVSAEEEPAP 248 >gi|313675957|ref|YP_004053953.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa DSM 4126] gi|312942655|gb|ADR21845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa DSM 4126] Length = 713 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSL 332 +KE + ++ L G+ + LA ++ + LS G F +P SL F L Sbjct: 255 LQTEKELKKIYEQLNSGENWFILATKESEDLSTKDNGGSLPWFGAGRLP-ASLETVAFEL 313 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE-KVKEDYKRL 391 +KGD + + +G+ I + + + S + +++ ++ +++ + SE K E K+L Sbjct: 314 EEKGDISKPVESPYGWHILKLEDKR--GVGSLESMEESLSRRVQRDQRSELKEVEVIKKL 371 Query: 392 EEF 394 +E Sbjct: 372 KEE 374 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 24/141 (17%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQ 288 Y+ +++ ++ YE+ ++ K+A A+Q Sbjct: 99 YLEEIKKPYLTAEKVNKALVKETYER------LQHEVNASHILIRVDKDAKAEDTLKAYQ 152 Query: 289 SLK-------KGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIFSLAKKGD 337 ++ G+ F LA E + S S LG F+ + + + + G+ Sbjct: 153 KIEEVKNKFDAGESFEALAREYSEDPSAKSNNGLLGWFTAFQMV-YPFESAAYQ-TEVGE 210 Query: 338 FTPVIHGSFGYVIAHVSNIKP 358 +P+ FGY I V++ + Sbjct: 211 ISPITRTQFGYHIIKVNDKRE 231 Score = 38.0 bits (87), Expect = 5.0, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 15/102 (14%) Query: 193 DYIVLNNRHVPAIADPSNAVLTQW-------FEKYKDNYRAPEYKRIS------YILFDV 239 D+ +L+ + A+ + L ++ +E+ + PEYK + +LF++ Sbjct: 414 DFSLLDFLNEYDSANNIDLELEKYEKSKLIQYEENNLELKYPEYKFLRQEYKDGLLLFEI 473 Query: 240 HEKEKKIEISND--ELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 ++ +IS D L+ YE++K +Y + V ++VF + Sbjct: 474 MNQKVWSKISEDTTALKKYYEEHKNRYKTDGELKVARIVFSD 515 >gi|120555794|ref|YP_960145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] gi|120325643|gb|ABM19958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter aquaeolei VT8] Length = 92 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 T ++ ++ + +E ++++ G+ F ++A++ S LGSF + Sbjct: 2 AQATARHILVDSEAKCEELKKAIEGGQDFAEVAKQHSSCPSGRNGGDLGSFGPGQMV-PE 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++F+ ++ I FGY + V++ Sbjct: 61 FDKAVFN-SELNTVIGPIKTQFGYHLLEVTSR 91 >gi|227878123|ref|ZP_03996103.1| peptidylprolyl isomerase [Lactobacillus crispatus JV-V01] gi|256843679|ref|ZP_05549167.1| peptidylprolyl isomerase [Lactobacillus crispatus 125-2-CHN] gi|256850147|ref|ZP_05555577.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-1A-US] gi|262047710|ref|ZP_06020663.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-3A-US] gi|293380430|ref|ZP_06626499.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus crispatus 214-1] gi|295693412|ref|YP_003602022.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus crispatus ST1] gi|227862293|gb|EEJ69832.1| peptidylprolyl isomerase [Lactobacillus crispatus JV-V01] gi|256615099|gb|EEU20300.1| peptidylprolyl isomerase [Lactobacillus crispatus 125-2-CHN] gi|256713119|gb|EEU28110.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-1A-US] gi|260571995|gb|EEX28562.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-3A-US] gi|290923009|gb|EFD99942.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus crispatus 214-1] gi|295031518|emb|CBL50997.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus crispatus ST1] Length = 298 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 16/234 (6%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDN 223 V + GG D+ K+ ++ +++N S + + + YK Sbjct: 33 VASYKGGKITQEQYYDEMKKSQAGKSTLANMIINRALEQQYGKYVSQKKVDKQYNNYKKQ 92 Query: 224 YRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIRTVEQL 275 Y + + ++ I+ +S L+ + K++ TV+ + Sbjct: 93 YGSQFSAVLQQNGMTASSFKQNIKTNLLSEQALKHIKKVTKKQEQQAWKSYQPKVTVQHI 152 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSLADSIF 330 + + A + LK GK F LA++ + + S + D S + F Sbjct: 153 LVAKKSTAQSIIKQLKDGKSFKVLAKKYSLDTATKNKAGKLPSFDSTDTTLDSSFKTAAF 212 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 L + + GY + + + P+ F + KK I +Q+ + A ++ Sbjct: 213 KLKTGEVTSTPVKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDQIYASMAQDQA 264 Score = 37.3 bits (85), Expect = 7.8, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 33/168 (19%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + +TV S K+ + + + K L N++ Sbjct: 26 NSGTKATVASYKGGKITQEQYY--------------------DEMKKSQAGKSTLANMII 65 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + + Sbjct: 66 NRALEQQ---YGKYVSQKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKQNI 115 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 L + + + QA + Y +V +I++ + Sbjct: 116 KTNLLSEQALKHIK---KVTKKQEQQAWKSYQPKVTVQHILVAKKSTA 160 >gi|307208736|gb|EFN86013.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Harpegnathos saltator] Length = 126 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G+KF ++A + S LG ++ + D+ Sbjct: 34 KVRHILCEKQSKILEALEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 92 Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357 F+L +PV FGY I V + K Sbjct: 93 AFALPISSLASPVYTDPPVKTKFGYHIIMVESKK 126 >gi|304310966|ref|YP_003810564.1| Probably peptidyl-prolyl CIS-trans isomerase C [gamma proteobacterium HdN1] gi|301796699|emb|CBL44911.1| Probably peptidyl-prolyl CIS-trans isomerase C [gamma proteobacterium HdN1] Length = 264 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 32/260 (12%) Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 ++ +V + + + + + A + E R + V A L Sbjct: 11 AKAMLVSVNGVEIPEAAIKAEMAAEYADEERVKAWEKAATALVIRELLLQQASLQGL--- 67 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 E I + + + +E+N ++ SP++ ++F Sbjct: 68 --------EGDEAECIDTLLSRNIEVPTADESYCRRFFEENPARFRSPDLIEARHILFAA 119 Query: 280 -----------QKEADEAFQSLKK-GKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 Q+EA + L+ ++F + A E S SLG SK Sbjct: 120 APGDWDARDLAQEEAVRIIERLRATPEQFAEYANEYSACPSREEGGSLGQLSKGSTV-PE 178 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 +IF L G I +GY + + + + ++ VK+ +A + Sbjct: 179 FESAIFGLP-TGLHGTPIESRYGYHVVWIDHRVDGQPLPYEHVKEGVARYLEDN----VF 233 Query: 385 KEDYKRLEEFLALGTSMDEI 404 ++ + + LA ++ I Sbjct: 234 RQGLSQYLQLLAGSATITGI 253 >gi|260775523|ref|ZP_05884420.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus ATCC BAA-450] gi|260608704|gb|EEX34869.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus ATCC BAA-450] Length = 431 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 60/378 (15%), Positives = 122/378 (32%), Gaps = 88/378 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V V S S K + N L +++ + L+ Sbjct: 28 DKVAVIVNSGVVLQSDIETSLKTIRANAKKN-----NQSLPDEATLREQVTEKLIVDTIQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E IG+ D R+ I K+N + + +A EG++ ++ + K + Sbjct: 83 QQEAERIGVRIDDNRLNEAIDEI----AKNNNQTLQQLNTSIAEEGLSYAQFREQVRKEI 138 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFE 218 + + V R ++ + ++ I A +NA + Sbjct: 139 AANEARNALV-------------------RRRINILPAEVDNLANILAKETNATVQ---- 175 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278 +I +I V++ + K I Sbjct: 176 -----------YKIGHIQLRVNDGDDKAAI------------------------------ 194 Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKK 335 +++A++ + L +G F +A K +L G KE +P AD I +L K Sbjct: 195 -EEKANQIVKELNQGSDFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-NLQNK 251 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKR 390 G G+ I + ++K TV+ EV I + +++ + +R Sbjct: 252 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGVQKELLDITRR 311 Query: 391 LEEFLALGTSMDEISRRE 408 ++ + + E++++ Sbjct: 312 IQ---SGKATFAEMAQQY 326 >gi|325522151|gb|EGD00807.1| putative peptidylprolyl isomerase [Burkholderia sp. TJI49] Length = 280 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 10/170 (5%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + ++ V + +++ E++A Y+ E R E + + + + + Sbjct: 105 RTVAATDLYVRDNVHPQAVTDAEVKARYDHIVANAAQFEYR-AEVIAVADPAQMNTVIAA 163 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSF--------SKEYIPDVSLADSIFSLAKKGDFTPV 341 LK+G F LA++ + + +A++I SL + G Sbjct: 164 LKQGAAFDTLAKQYNTTPNGGVAQWVELRTPVAEGSTGGLPTPIAEAITSL-QPGAVAGP 222 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 I I + +P+ +F KK + Q+ + +L Sbjct: 223 IRIGNALAIVKLDEKRPTTVPTFDAAKKVLRQQLEAEAQQRAMAALVDKL 272 >gi|326319525|ref|YP_004237197.1| SurA domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376361|gb|ADX48630.1| SurA domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 476 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 46/403 (11%), Positives = 113/403 (28%), Gaps = 66/403 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + + ++ + G + L +++L+ L++ Q Sbjct: 73 VAVVNTEPITNNEVQARLARVEHQLAAQGGERPPRQV-----LAREVLERLINEKIQVQM 127 Query: 103 IEDIGLEADHGRV--------WGEIARSPLFHG--KDNKFSHDVFVSRLAR----EGINE 148 + G++ D + P H + S + F S L + + E Sbjct: 128 AIESGIKVDDYAISQAEQSVARQNSVSIPEMHRRLAADGISPERFRSELRNQMLIQRLRE 187 Query: 149 --------------KEYIDHYTK---------MLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 +Y+ + L+ +++ P + + + Sbjct: 188 RDVESRVRVTDLDVDQYMRDQQQSAISDPSKIELNLANILVAVPENATPEVVEQRRQRAQ 247 Query: 186 YFENRSV---DYIVLNNRHVPAIADPSNAVLT-QWFEKYKDNYRAPEYKRISYILFDVHE 241 +R D+ + A P L + ++Y D + + + Sbjct: 248 QAADRVRAGEDFAKVARELSDAPDAPIGGELGLRPADRYPDLFVRTVQQVPVGGIAGPVR 307 Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLK 291 + L+ S V ++ ++ A+ + L Sbjct: 308 SPAGFHV----LRVLERSRAGIPSSAVQTHVRHILLRTGPQLTEAAAAERLAEYRRRILS 363 Query: 292 KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348 F LA E + S LG +++ +L K + + I FG Sbjct: 364 GQADFATLAREHSQDGSAKQGGDLGWAGPGRYV-PEFEEAVEAL-KPDEISQPIVSRFGV 421 Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + + ++ + + + +R K E + Sbjct: 422 HLIQLLERREAKLTQREQ-RDMVRDAVREKKLEEAFTNWAQEA 463 Score = 47.3 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 44/372 (11%), Positives = 111/372 (29%), Gaps = 52/372 (13%) Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 V G++ + + QA++ SV ++ R P + Sbjct: 124 QVQMAIESGIKVDDYAISQAEQSVARQNSVSIPEMHRRLAADGISP-------------E 170 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR---TVEQLVFPN 279 +R+ ++ + E ++ +++ ++ ++ S + + ++ Sbjct: 171 RFRSELRNQMLIQRLRERDVESRVRVTDLDVDQYMRDQQQSAISDPSKIELNLANILVAV 230 Query: 280 QKEA------------DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + A +A ++ G+ F ++A E + LG + PD+ Sbjct: 231 PENATPEVVEQRRQRAQQAADRVRAGEDFAKVARELSDAPDAPIGGELGLRPADRYPDLF 290 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT----KA 380 + G + G+ + V + S V+ + + + T Sbjct: 291 VRTV--QQVPVGGIAGPVRSPAGFHVLRVLERSRAGIPS-SAVQTHVRHILLRTGPQLTE 347 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 + + + L+ ++R G +P E+ + Sbjct: 348 AAAAERLAEYRRRILSGQADFATLAREHSQDG----SAKQGGDLGWAGPGRYVPEFEEAV 403 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEE 498 + K ++ P S V + + + R+ KL E V+ + K E Sbjct: 404 EAL--------KPDEISQPIVSRFGVHLIQLLERREAKLTQREQRDMVRDAVREKKLEEA 455 Query: 499 VSSKANQLVLEY 510 ++ A + Sbjct: 456 FTNWAQEARARA 467 >gi|295106377|emb|CBL03920.1| Parvulin-like peptidyl-prolyl isomerase [Gordonibacter pamelaeae 7-10-1-b] Length = 439 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 48/388 (12%), Positives = 110/388 (28%), Gaps = 95/388 (24%) Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS----QKIGFVVNSERARSVG 84 G S + +V ++P + +S G + Sbjct: 29 GASASGTKTYTGGVAATVNGTEIPEDEVTGMVESIRSQMSMTDADTWGQWLADNAMTPES 88 Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 + ++++D+ + Q ++ + + + + ++ N + + + L + Sbjct: 89 VREEMIDSFAQQELIKQGAKEKNISVESSEIDDIVNKTKA-----NYEDDEKWKAALEQA 143 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 G E++Y ++ L + + + Sbjct: 144 GFTEEKYRENVESQLLQKKL----------------------------------TESFAS 169 Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264 +PS L ++ + Y Y KR S+ILFD ++ + + Sbjct: 170 DEEPSQEDLLKYAQMYASAYDG--AKRSSHILFDSGDEATAQSVLD-------------- 213 Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324 Q+ A+ A Q K + + +G + L SF EY Sbjct: 214 ---------QINSGQLDFAEAAKQYSKDNAEGTGGSAAKGGDVGWDKLSSFVTEYT---- 260 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI--------------------KPSFTVSF 364 D++ L K + ++ +G I +++ Sbjct: 261 --DALAGLEKD-QVSGLVTSQYGIHIIKCTDVFNAPKVVGEDGTETVELTSTDQIPVEFL 317 Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLE 392 VK+ + Q + T E E + + Sbjct: 318 DSVKESLKQQNQSTAVQEWFNEYKENAD 345 >gi|85711461|ref|ZP_01042519.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] gi|85694613|gb|EAQ32553.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145] Length = 92 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 ++ + EA+E + L G KF LA + S LG F + + + Sbjct: 2 ARAHALHILVKTKPEAEELKKQLANGAKFADLARKHSLCPSGKQGGDLGEFRRGEMV-PA 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +F + + +FGY + Sbjct: 61 FDKVVFGQPTL-EVHGPVKTAFGYHLIK 87 >gi|320103204|ref|YP_004178795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida ATCC 43644] gi|319750486|gb|ADV62246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida ATCC 43644] Length = 436 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 43/378 (11%), Positives = 116/378 (30%), Gaps = 89/378 (23%) Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-NSERARSVGLDKKI 89 + S S S+ VG + E+ +Q+ G + + ++K + Sbjct: 107 GGRVLSRSDSTLAARVGDAVITRGELD----HEIDRFAQQNGVSLATLTPEERLQVEKMV 162 Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 L+ + + Q + ++P K ++F++ Sbjct: 163 LNERIDRELILQEARR-------------VLKTPEQWAKISEFANQR------------- 196 Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209 + L R L++ + + R + Sbjct: 197 -WEAEEAPSLLRE----------AGVETLVELKEWMKRQGRDL----------------- 228 Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 + L + ++ + ++++ E+ A+Y++ +E++ E Sbjct: 229 DQELEDY------------RVKVITTEYLRMTLGPRLQVDLPEMLADYQQRREQFRR-EA 275 Query: 270 RTVEQLVFPNQKE----------ADEAFQSLKKGKKFIQLA--EEQGKSLSDISLGSFSK 317 R V + + + A + L+ G+ F +A E G + SD + Sbjct: 276 RLVWRELLADPARVGGREAAAGLARNWLERLQHGEDFAHIARTESHGVTASDGGRWETTP 335 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVI--HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 E + ++ ++ +P + G + + + + F +V+ + ++ Sbjct: 336 EGYNRREVNQALAAMTPP---SPPVLVESEDGVHVIQLESRTQAGFQPFSDVQDQLRERL 392 Query: 376 RITKASEKVKEDYKRLEE 393 K ++ + +RL + Sbjct: 393 FQAKLQQESRRLLERLRQ 410 >gi|256027747|ref|ZP_05441581.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11] Length = 563 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 123/361 (34%), Gaps = 51/361 (14%) Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202 + I++++ +M+SR + N LD +F DY + V Sbjct: 249 QKISKEDAEKQAKEMISRQIKMAKIAKEKGVKVNENLDSISQFQ------DYYIGLAEKV 302 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 P++ L ++F K Y P + V ++ +D+L Sbjct: 303 RDDVKPTDDELLKFFNANKSKYSIPATADAKLVFISVKSAKE-----DDDL--------- 348 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI 320 +++A++ L + F + + + + LG+F + Sbjct: 349 ----------------AKEKAEKLLSELT-PENFTEKGKSLSNNQDIIYQDLGTFGTTAM 391 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++ + VI FGY IA+V + EV+ + K Sbjct: 392 VK-EFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQW---EVEHILIVPYPSEKT 447 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 + E +++ + GT ++ +KI + D G G + Y ++ Sbjct: 448 VTEKLEKLNKVKAEIEAGT----LTLNDKIDEDVIQSFDAKGITPDGV-IPDFVYNPEIA 502 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 VFG + L+K + + + Q + + A D ++ VK D+ K AE +S Sbjct: 503 KAVFGTE--LNKVGIINPNKATIVVFQKTKEVKAEDANFDKSKEQVKSDYINNKVAEYMS 560 Query: 501 S 501 Sbjct: 561 K 561 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 81/620 (13%), Positives = 182/620 (29%), Gaps = 72/620 (11%) Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63 IRK + K F+++L V F++ S S + ++ Sbjct: 2 SIRKFRKQ--MKPFIIILTVVFILSLAYGGYESYKTSRANKKAQEAMLLNKDYVQKID-- 57 Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + Q + S+R +D ++++ +D+ ++ V + Sbjct: 58 IERAKQDLSRTY-SDRVDKDIVDILAFNDVIDKNLTLHIAKDLKVKVPSSEVDK---QYE 113 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 + F L G+ + + + L F + P++ ++ Sbjct: 114 ELESSMG--DKEQFRRMLQVRGLTKDSLKNQIEENLLMQKTREEFAKNINPTDEEINTYM 171 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 Y +N + L + ++ + APEY+ + Sbjct: 172 ALYSIPADKKEEAVNLYKSEKGNEAFREALLKARKEMQIKDLAPEYENL----------- 220 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 +E + E + N + + + Q + E +A + + + K ++A+E+ Sbjct: 221 --VEKTAYEEEGFNITNLDLARATANIMLGQKISKEDAE-KQAKEMISRQIKMAKIAKEK 277 Query: 304 GKSLSD------------ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 G +++ I L ++ + F A K ++ V Sbjct: 278 GVKVNENLDSISQFQDYYIGLAEKVRDDVKPTDDELLKFFNANKSKYSIPATADAKLVFI 337 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411 V + K + + KA + + E E F G S+ S + I+ Sbjct: 338 SVKSAKED-------------DDLAKEKAEKLLSELTP--ENFTEKGKSL---SNNQDII 379 Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471 DL + +E ++ +V + + V+ Sbjct: 380 YQDLGTFGTTAMVKEFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQWEVEHILI 439 Query: 472 IP-ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530 +P ++ T K + KA + K D+ ++ A +T Sbjct: 440 VPYPSEKT------------VTEKLEKLNKVKAEIEAGTLTLNDKIDEDVIQSFDAKGIT 487 Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590 + + + + + VF + V N + VVF+ T DK Sbjct: 488 PDGV----IPDFVYNPEIAKAVFGTELNKVGIIN-PNKATIVVFQKTKEVKAEDANFDKS 542 Query: 591 ISYLTQMMNKDLLDSVIAYL 610 + + + ++ L Sbjct: 543 KEQVKSDYINNKVAEYMSKL 562 >gi|254294289|ref|YP_003060312.1| SurA domain protein [Hirschia baltica ATCC 49814] gi|254042820|gb|ACT59615.1| SurA domain protein [Hirschia baltica ATCC 49814] Length = 426 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 62/469 (13%), Positives = 129/469 (27%), Gaps = 102/469 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 TV V Q + +S + L +G N+E R ++ L+ Sbjct: 43 EGTVAIVNDQPISYSDVRQRAQFILV----SLGVQPNAETIRQAQTR--AIEGLIDEKLQ 96 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 Q E L + + IA + F+ LA+ G++ + D + Sbjct: 97 LQEAETYELVVEEAEIDDSIANIAARSNAT----PEDFLQGLAQVGLSPRTLRDQIRADI 152 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + +VG G V L + S Sbjct: 153 AWRRLVGGRFGS-------------------RVRISSLQIDDNLERLNKSMEE------- 186 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 P+Y+ L I+ +E+ Y+ Sbjct: 187 -------PQYRIAEIFLPG---------ITQEEISVVYQ--------------------- 209 Query: 280 QKEADEAFQSLKK-GKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKK 335 A+E + ++ F +A + + + +G + + AD + +L+K Sbjct: 210 --GAEELKRQIENQAAPFEAVARQFSAAPTASAGGEIGWLGESQL-KKEYADQVRALSKP 266 Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-TKASEKVKEDYKRLEEF 394 G T I G + + N + + V + A KV ++E Sbjct: 267 G-LTDPIVTDNGVYLVSLMNKQAPVEEAL--VGFKLKQIYATGADAVSKVDNAAAQIENC 323 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 AL E + +E + +D + + ++ +F S Sbjct: 324 AALDN---ESASQEGVAFVDFGVTQLTELSQQYQD-------------LFNAQSDNSHSA 367 Query: 455 TVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVSS 501 + + D V + +R ++ + + + + + Sbjct: 368 PIMVADNKAAIVYVCSHEMSRGNMPTRADIEDKLHGEMVDMMASRYLRD 416 >gi|237744140|ref|ZP_04574621.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1] gi|289765704|ref|ZP_06525082.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11] gi|229431369|gb|EEO41581.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1] gi|289717259|gb|EFD81271.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11] Length = 356 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 123/361 (34%), Gaps = 51/361 (14%) Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS-NLLLDQAKRFYFENRSVDYIVLNNRHV 202 + I++++ +M+SR + N LD +F DY + V Sbjct: 42 QKISKEDAEKQAKEMISRQIKMAKIAKEKGVKVNENLDSISQFQ------DYYIGLAEKV 95 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 P++ L ++F K Y P + V ++ +D+L Sbjct: 96 RDDVKPTDDELLKFFNANKSKYSIPATADAKLVFISVKSAKE-----DDDL--------- 141 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYI 320 +++A++ L + F + + + + LG+F + Sbjct: 142 ----------------AKEKAEKLLSELT-PENFTEKGKSLSNNQDIIYQDLGTFGTTAM 184 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 +++ + VI FGY IA+V + EV+ + K Sbjct: 185 VK-EFEEALRDVPSNTVVNKVIKTKFGYHIAYVKKNDNNQQW---EVEHILIVPYPSEKT 240 Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440 + E +++ + GT ++ +KI + D G G + Y ++ Sbjct: 241 VTEKLEKLNKVKAEIEAGT----LTLNDKIDEDVIQSFDAKGITPDGV-IPDFVYNPEIA 295 Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 VFG + L+K + + + Q + + A D ++ VK D+ K AE +S Sbjct: 296 KAVFGTE--LNKVGIINPNKATIVVFQKTKEVKAEDANFDKSKEQVKSDYINNKVAEYMS 353 Query: 501 S 501 Sbjct: 354 K 354 >gi|167622857|ref|YP_001673151.1| SurA domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352879|gb|ABZ75492.1| SurA domain [Shewanella halifaxensis HAW-EB4] Length = 434 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 46/346 (13%), Positives = 112/346 (32%), Gaps = 63/346 (18%) Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 + + G + S+ A L ++++ L+ Q + IGL ++ I Sbjct: 51 IRANAANAGQKLPSDTA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQTIENI- 105 Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQA 182 K+ K + +++ EG +Y + + ++ ++ ++ S ++ Sbjct: 106 ---AKEQKMTVAQMKAQIESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINSL 162 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK------------DNYR----- 225 + E + + H+ PS+A Q K D++R Sbjct: 163 VKLINEQ-GLKEVEFQIGHILIDV-PSDANSQQLEAASKRAAVVMKRLKDGDDFRSIAIA 220 Query: 226 ------APEYKRISYILFDVHEKEKKIEISNDELQAEY-------------EKNKEKYFS 266 A E Y+ + +++ + + + Sbjct: 221 ASSGPKALEGGIWDYMNINEMPTLFAEVVTDAKTGDIIGPIKSASGFHIIKVMDARGLET 280 Query: 267 PEIRTV--EQLVFP-----NQKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG- 313 E++ V ++ +++ A D +K G+ KF LA + + + G Sbjct: 281 KEVKEVKSRHILLKPSPILSEERAKSMMDRFLTQVKSGEAKFEDLARQYSEDPGSAAKGG 340 Query: 314 --SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 ++ I + A + SL + G ++ + G+ I + + Sbjct: 341 ELGWADPNIYVPAFAQELNSL-EIGGYSEPFRSTHGWHIVQLEERR 385 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 101/306 (33%), Gaps = 37/306 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQ ++ + A + Sbjct: 75 RLILTRLQLQMADRIGLHIGDLQLDQ----------------TIENIAKEQKMTVAQMKA 118 Query: 216 WFEKYK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 E YR + I+ + +++I++S E+ + + E+ + Sbjct: 119 QIESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLINEQGLKEVEFQI 178 Query: 273 EQLVFPNQKEADE------------AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 ++ +A+ + LK G F +A + G + I Sbjct: 179 GHILIDVPSDANSQQLEAASKRAAVVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNI 238 Query: 321 PD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRIT 378 + +L + + AK GD I + G+ I V + + T +EVK I + Sbjct: 239 NEMPTLFAEVVTDAKTGDIIGPIKSASGFHIIKVMDARGLETKEVKEVKSRHILLKPSPI 298 Query: 379 KASEKVKEDYKR-LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 + E+ K R L + + ++++R+ S D G+ +P Sbjct: 299 LSEERAKSMMDRFLTQVKSGEAKFEDLARQY---SEDPGSAAKGGELGWADPNIYVPAFA 355 Query: 438 QLLFRV 443 Q L + Sbjct: 356 QELNSL 361 >gi|307171509|gb|EFN63350.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Camponotus floridanus] Length = 125 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G+KF ++A + S LG ++ + D+ Sbjct: 33 KVRHILCEKQSKILEALEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 91 Query: 329 IFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357 F+L + P + FGY I V K Sbjct: 92 AFALPISNLASPIYTDPPVKTKFGYHIIMVEGKK 125 >gi|237740229|ref|ZP_04570710.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31] gi|229422246|gb|EEO37293.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31] Length = 356 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 52/350 (14%), Positives = 116/350 (33%), Gaps = 44/350 (12%) Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213 + L++ + + + ++ DY + + V P++A L Sbjct: 47 EQAEELAKNMIAKQIKVAKMAKEKGVKVNEELDLMSQLQDYAIGLSEKVREEIKPTDAEL 106 Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273 +F K Y PE I V ++ + Sbjct: 107 ESFFNTNKSRYNIPETADAKLIFITVKSTKEDDAV------------------------- 141 Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG--KSLSDISLGSFSKEYIPDVSLADSIFS 331 + EA++ L + F + + G + + LG+F + + +++ Sbjct: 142 -----AKAEAEKLLAELT-PENFSEKGKTLGNNQDIIYQDLGTFGTKAMVK-EFEEALKD 194 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + VI FGY + +V + S + + + K + E ++L Sbjct: 195 VPSNTVINKVIKTKFGYHVVYVKKNDNNQQWSAEHI---LIVPYPSDKTVAEKLEKLEKL 251 Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451 + + GT ++ +KI + D G G + Y ++ VF + PL+ Sbjct: 252 KADIEAGT----LALNDKIDEDVIQSFDAKGITPDGI-IPDFVYSPEIAKAVF--ETPLN 304 Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 K + + + Q + + A + ++ +V+KD+ + E +S Sbjct: 305 KVGIINPNKATIIVFQKTKEVKAEEANFTKLKEEVRKDYINKQVGEYMSK 354 >gi|256823777|ref|YP_003147740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis DSM 16069] gi|256797316|gb|ACV27972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis DSM 16069] Length = 95 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIF 330 ++ +KEA L+KG F QLA+ LG F + + +++F Sbjct: 8 HILVKTEKEALALKAKLEKGADFYQLAKRHSMCPSKKQGGDLGEFKRGQMVKP-FDNAVF 66 Query: 331 SLAKKGD-FTPVIHGSFGYVIAHV 353 + + + FGY + V Sbjct: 67 AKGSEDKPLIGPVKTRFGYHLIKV 90 >gi|120436843|ref|YP_862529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gramella forsetii KT0803] gi|117578993|emb|CAL67462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gramella forsetii KT0803] Length = 482 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 110/339 (32%), Gaps = 33/339 (9%) Query: 133 SHDVFVSRLAREGINEKEYID-HYTKMLSRTDVVG--MFVGGMRPSNLLLDQAKRFYFEN 189 D+ + +G++ + D + L + + + + + Sbjct: 77 DVDLMYKDMQSQGMSTADVTDCNLAGSLMENKLYAHHAIQDSIIIPDSQISATVDQQIQG 136 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 + + + + S A L + ++ + ++++ + ++IE++ Sbjct: 137 LAQQAGSME-KVLEFYKKESEAELRD------EIFQLTKQRQLA--QRMQQKIIEEIEVT 187 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---KEADEAFQSL--------KKGKKFIQ 298 +E++ Y EK + Q+V + E + L + G F Sbjct: 188 PEEVRQYYVGMDEKPMFGTEVELSQIVIEPEIPESEKQKVIDRLNGFKADIEENGASFST 247 Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 A + + S G + +++ D FSL ++G+ + FGY I V Sbjct: 248 KAVLYSQDPGNASDGGRITLTRKDAFVKEFKDVAFSL-QEGEISEPFETEFGYHIIQVDK 306 Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415 I+ E++ I + E + + L + G E + + S + Sbjct: 307 IRGQTV----ELRHIILIPDVTNASVEAARTEIDTLRSKITAGD--IEFAAAAREASDEE 360 Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 + GK + + ++ +F + + L + Sbjct: 361 ETKNEGGKLINPRTGDTRFELTKIDPELFKQVEGLEEGE 399 >gi|139439422|ref|ZP_01772863.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC 25986] gi|133775201|gb|EBA39021.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC 25986] Length = 407 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 57/419 (13%), Positives = 112/419 (26%), Gaps = 107/419 (25%) Query: 6 RKASRTWVAKIFLVVLFV--------PFLIWGLSDALFSVSGS-----STVVSVGRQKVP 52 RK + KI LVV+ V GL S S ++ + Sbjct: 29 RKTYVSKTVKIVLVVIGVLAMLLSVSAMACSGLMSQTESASSGYKLTGGVAATINGTNLT 88 Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSV--------GLDKKILDNLVSGATLDQFIE 104 + ++ + G+ + + A+ + K+++D+ L Q + Sbjct: 89 EDTVTK----QIMSMRTSYGYTKDKDWAQYLVDNDLTPKKYRKQLIDSYAQQILLQQAQK 144 Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 + G+ V F L G E Y D + L++ + Sbjct: 145 ENGVTVSDEEVEKAWKD--ACKSAGG---AKAFKKTLKTYGYTEDTYKDSLKESLAQQKL 199 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224 V + P ++ + + + NY Sbjct: 200 ----------------------------------KDAVAPTSKPKDSEIVDYINENLSNY 225 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 I D S+++ A + +A Sbjct: 226 NDARRSSNILIKVDSDA-------SDEDKAA-----------------------AKAKAQ 255 Query: 285 EAFQSLKKGK-KFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 E + G+ F E+ +G D + KGD + Sbjct: 256 ECLDKINSGELSFEDAVEQYSDDTGSKDKKGDVGWDKLTTFVDSY--QAALEGLNKGDVS 313 Query: 340 PVIHGSFGYVIAHVSN--IKPSFTVSFQEVKKDIA----NQMRITKASEKVKEDYKRLE 392 V+ ++GY I ++ + ++V KDI N ++ AS E ++ + Sbjct: 314 DVVESTYGYHIIKCTDYFHVDNQVDDIKQVPKDIKKYVSNVVKTQAASTAYSEWLEQYK 372 >gi|269122654|ref|YP_003310831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella termitidis ATCC 33386] gi|268616532|gb|ACZ10900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella termitidis ATCC 33386] Length = 600 Score = 72.3 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 58/433 (13%), Positives = 145/433 (33%), Gaps = 64/433 (14%) Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARS--PLFHGKDNKFSHDVFVSRLAREGIN- 147 +L+ + +++ E + + P+ + F + +R+ ++ Sbjct: 216 SDLIRNSLIEKQREKAKIVFKDDEIKKLYEEMVRPIAEKEGYSFKEALMDTRILMMVVST 275 Query: 148 ----EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF--ENRSV--DYIVLNN 199 ++ I + + + D+ + G + + F E R + Y V Sbjct: 276 GTEYSEDLIAKVRESI-QKDLDNLVAVGKAAKEKGIKASPDFVGVDELRDLGKRYFVYLV 334 Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259 +PS+A L + ++ + Y R S + V + E + Sbjct: 335 DSY----NPSDADLKKIYDADQGKYD----IRHSVGGYVVGDFFDPTEADKE-------- 378 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSF 315 +K A+E ++L + F++ A++ + LG Sbjct: 379 ------------------NTKKSAEELKKTLT-PENFVETAKKVSEDPGSKDQGGELGWV 419 Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 ++I S A+KG + FG I +V ++ S ++V + Sbjct: 420 DSNTNFVPEFLEAIKS-AQKGQIIGPVQTEFGSHIIYVEDV-DSANPDKKKVSHILLLPK 477 Query: 376 RITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434 + +++ + L++ L + ++ ++K + + K + V I Sbjct: 478 PSEASRKELVDRLDTLKKELEEKKVTWTDVIDQDKY---KYEVKEVFKKIYENSAVPGIG 534 Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494 + E+ ++F + V +G Y + +P + R EEV + + + Sbjct: 535 FVEEANKKLFASKVDEVLSYEV---NGGYFLMVKTAEVPYKKRTFEEVKGQI----RNEE 587 Query: 495 TAEEVSSKANQLV 507 + + + ++L+ Sbjct: 588 ALKYATQELDKLL 600 Score = 66.9 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 99/290 (34%), Gaps = 37/290 (12%) Query: 4 IIRKASRTWV-AKIFLVVLFVPFLIWGLSDALFSV----SGSSTVVSVGRQKVPFSSFIN 58 +RK + V + + + + + +++ + + + V K+ Sbjct: 2 ALRKFKKLMVPLSVLFIAAMLVPIFLKIGESIRAGKNIQQNNEVIAEVNGHKIHRLDLER 61 Query: 59 SWK------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112 ++ + + G NSE + + K IL LVS A L ED+ ++A Sbjct: 62 GVAGVKNKIMQIKSMKAQQGIEDNSEVPDDI-IKKVILGELVSNALLVSSAEDLKIKASD 120 Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI-NEKEYIDHYTKMLSRTDVVGMFVGG 171 + +I + F++ L GI NEKE + + + V+ Sbjct: 121 KEINDKINEIKA-----GVAKGESFLNYLQSMGIANEKELKRMIKESIEVSRVLETQQKA 175 Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 + S L + Y Y ++ A P+ ++Y EY Sbjct: 176 HKLSEEDLKKYYEMY------RYTDFQDQTFE-QAKPT-----------IEDYVGKEYSD 217 Query: 232 -ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 I L + ++ KI +DE++ YE+ E + ++ + + Sbjct: 218 LIRNSLIEKQREKAKIVFKDDEIKKLYEEMVRPIAEKEGYSFKEALMDTR 267 >gi|153010218|ref|YP_001371432.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum anthropi ATCC 49188] gi|151562106|gb|ABS15603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum anthropi ATCC 49188] Length = 308 Score = 72.3 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 18/161 (11%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 E + + + + + + +E YE N+ ++ S I ++ +A Sbjct: 112 ETDEDALVRMVIEREVEVPSATREEALRFYENNRHRFTSAPILEASHILIAADPADSQAR 171 Query: 288 QS------------LKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSL 332 + + F +A E S +LG ++ ++ L Sbjct: 172 EKARTTASHLASSVIAAPATFASVAHEYSSCPSGAQGGNLGQLTRGSTV-PEFERALERL 230 Query: 333 AKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372 G+ TP I FG+ I + + F V IA Sbjct: 231 T-PGEITPAPIESRFGFHIVRLDRRIEGEELPFDYVADRIA 270 >gi|94500758|ref|ZP_01307287.1| peptidyl-prolyl cis-trans isomerase C [Oceanobacter sp. RED65] gi|94427080|gb|EAT12061.1| peptidyl-prolyl cis-trans isomerase C [Oceanobacter sp. RED65] Length = 92 Score = 72.3 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++K A+E Q L KG+ F +LA++ S +LG F K + + D +F Sbjct: 8 HILVKDKKLAEELKQRLAKGEDFGKLAKQYSTCPSKKQGGNLGEFHKGDMVK-AFDDVVF 66 Query: 331 S---LAKKGDFTPVIHGSFGYVIAH 352 L G I FGY + Sbjct: 67 KRPILKVHG----PIKTRFGYHLIK 87 >gi|298373303|ref|ZP_06983292.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroidetes oral taxon 274 str. F0058] gi|298274355|gb|EFI15907.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroidetes oral taxon 274 str. F0058] Length = 448 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 112/318 (35%), Gaps = 50/318 (15%) Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI---EISNDELQAEYEKNKEKY- 264 S L ++F+K + R ++ I + ++K I ++S E++ +E K Sbjct: 106 SQEKLEEYFKKSINEIREELFEAIKRQMVVQEVQQKIIGNNKMSPSEVRKFFESMKPDSI 165 Query: 265 -FSPEIRTVEQLVFP---NQKEADEAFQSL--------KKGKKFIQLA----EEQGKSLS 308 P V+ + + +E L K F LA E++G S Sbjct: 166 PTMPATVEVQVIRLEPNITDAQREEVKNRLRDLAERVNKGNADFTMLARLYSEDEGTSKQ 225 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 SLG F + + + ++ F L + G + V+ +GY I + K Sbjct: 226 GGSLGFFGRG-MMEPEFSNVAFDLHEPGKVSRVVETIYGYHIIQLVEKKGDRI------- 277 Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALG-----TSMDEIS---RREKIVSIDLPLVDF 420 + + + K S+ VK+ + ++ + +E + +K ++ L+ Sbjct: 278 -NCRHILMRPKVSDDVKKATLARLDSISFSIKNNTMTFEEAAMRFSSDKNTRLNGGLMSN 336 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH----TVALPDGSYMWVQIKESIPARD 476 E +P ++ V+ L Y+ V+IK+ Sbjct: 337 PNSGSSRFEYQNLPA--EIAKEVYNMQKGEISKPFAMIDTQLGREVYVVVKIKD------ 388 Query: 477 RKLEEVLTDVKKDWKTVK 494 KL+ ++ D++ +K Sbjct: 389 -KLDSHKANLTDDYQVIK 405 >gi|326204847|ref|ZP_08194701.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium papyrosolvens DSM 2782] gi|325985059|gb|EGD45901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium papyrosolvens DSM 2782] Length = 348 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 56/407 (13%), Positives = 121/407 (29%), Gaps = 79/407 (19%) Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65 RK VA ++ +P + + + + V VG + + K + Sbjct: 3 RKFVSALVAVALVLTAMIPAGNTFAAATTKTATPETYVAKVGTDNISKEDYNIFLKDAIS 62 Query: 66 MISQKIGFVVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 MI A + K LDN+V + Sbjct: 63 MIQSYFNSYNVDWNANINNMKASDYAKKLALDNVVDFKIQLSKAKAAKTALTKKETDDF- 121 Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179 + + +++ LA E + L Sbjct: 122 -----------NTNMNSYLNSLAA---TTAEQEKIIKNE----------------TGFTL 151 Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239 Q K FY +V + + + ++ L ++++ KD + + +ILF Sbjct: 152 SQFKSFYN---NVSIVRKFSSQTQSSYKTTDTELKKFYDSNKDKFY---KVIVGHILFLS 205 Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298 +++ + D +K+A++ + + + F Sbjct: 206 NDENNQSTPQKD-------------------------AEAKKKAEDTLKKVNEPNCDFAA 240 Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVS 354 L +E + + G + K + + ++ S K GD T ++ S+GY + + Sbjct: 241 LVKELSEDPGSVEKGGKYTVMKNHQYVPEFENWAVDSSRKVGD-TGIVKTSYGYHVMKLM 299 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + SF ++K DI + + + + K + L S+ Sbjct: 300 KVY-----SFTQLKDDIKSGYISKRYDDDLNAWRKDKKYKLVKNESV 341 >gi|227325836|ref|ZP_03829860.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 93 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++EA++ L+KG F +LA++ S LG F K + + ++F Sbjct: 9 HILVDTEQEANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY + V Sbjct: 68 SCELLKP---FGPVKTQFGYHVIKV 89 >gi|268532952|ref|XP_002631604.1| Hypothetical protein CBG20785 [Caenorhabditis briggsae] gi|187023057|emb|CAP37736.1| hypothetical protein CBG_20785 [Caenorhabditis briggsae AF16] Length = 120 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q +A EA + LK G KF ++A + + S LG ++ + D+ Sbjct: 28 KVRHILCEKQGKALEAIEKLKSGMKFNEVAAQYSEDKARSGGDLGWMTRGSMVGP-FQDA 86 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L+ K P + FGY + V K Sbjct: 87 AFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 120 >gi|294788198|ref|ZP_06753441.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453] gi|294483629|gb|EFG31313.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453] Length = 292 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 88/249 (35%), Gaps = 10/249 (4%) Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN-NRHVPAIADPSNAV 212 + + G G + + ++ + + L+ + A + Sbjct: 39 ERRAENVQKNTQGQISDGPQLRQFITNELITEQLVVQEAKRLKLDKSSDYQAAEAEALKQ 98 Query: 213 LTQWFEKYKDNYRA--PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270 + +++ +Y+ +L K+ IS Q +Y + K +Y Sbjct: 99 AKAQGLDKQADFKQNWADYQNRLLMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEI 158 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD--- 327 + ++V +A+ A L K KKF +A++ S S + G EY+ L D Sbjct: 159 QLGEIVTNKPADAEAAINDLTKKKKFSDVAKKYSMSKSSQTSGGIVPEYVALPDLKDGNN 218 Query: 328 ----SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 ++ L+K + ++ +V++ + +F E+K I QM + S Sbjct: 219 LVYQAVNGLSKGQFTKTPVKDGNVSLVLYVNDKRAINVPTFNEMKASIVQQMEDEQLSLA 278 Query: 384 VKEDYKRLE 392 + K+ + Sbjct: 279 IDNLGKKAK 287 Score = 40.4 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 28/176 (15%) Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85 +++ LS +LF ++TVV+V K+ S + +I + L Sbjct: 12 VLFALSGSLF----AATVVTVNGVKIDSSDVERRAENVQKNTQGQI--------SDGPQL 59 Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHG--RVWGEIARSPLFHGKDNKFSHDV----FVS 139 + I + L++ + Q + + L+ E + G D + + + Sbjct: 60 RQFITNELITEQLVVQEAKRLKLDKSSDYQAAEAEALKQAKAQGLDKQADFKQNWADYQN 119 Query: 140 RL----------AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185 RL ++ I+E Y ++ SR G +N D Sbjct: 120 RLLMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEIQLGEIVTNKPADAEAAI 175 >gi|152996616|ref|YP_001341451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] gi|150837540|gb|ABR71516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp. MWYL1] Length = 92 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ + EA+ L KG F +LA++ S LG F K + + ++F Sbjct: 8 HILVKTKVEAESLKLKLDKGADFHKLAKQFSTCPSGKKGGDLGEFRKGDMV-PAFDKAVF 66 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 L K + FG+ + V Sbjct: 67 GGPLYK---IQGPVKTQFGFHLIKV 88 >gi|294338549|emb|CAZ86878.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase, surA [Thiomonas sp. 3As] Length = 472 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 58/477 (12%), Positives = 143/477 (29%), Gaps = 83/477 (17%) Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97 + VG Q + + + E + A L ++L+ ++ Sbjct: 65 TSDGIAAIVGNQVIT--DYDLQLRVEATRQQAQAAGATLPSAA---QLRSQVLNQMIDEV 119 Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157 L Q+ E IG+ + + IA+ +NK + S + +EG+ Y D + Sbjct: 120 ALAQYAEQIGMGVNQDTLDRAIAQVAS----NNKLTVPELRSAIEKEGMGWSTYRDQLKR 175 Query: 158 MLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHV--PAIADPSNAVLT 214 + + + + + S +D+ + + + P + + A + Sbjct: 176 EILISRLRERSMAQLPTVSESEIDEFLSKQDAAAASPQAAYDIAQIFLPVAQNATEAQVA 235 Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274 ++KI+ + +L+ Sbjct: 236 A--------------------------VKQKIDAIDAKLK-------------------- 249 Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334 A AF L + A+ LG +P D++ +L + Sbjct: 250 --------AGAAFAQLATQDSQGEGAKR------GGDLGMRPANRLP-TLFVDTVRNL-Q 293 Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G +PVI + G+ I + + ++ ++ ++ ++ +++ + K + Sbjct: 294 PGQISPVIRSAAGFHILKLLQVSGETAAPTTAMQSEVR-EIVLSASTDAQRIRAKAELDS 352 Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454 +A ++ EK + A G + + +L + +P Sbjct: 353 IAQAVQNGKVQFSEKARELSQDPATAAKGGALGWVLPG--QLDPVLDAALQRLNPGDVSA 410 Query: 455 TVALPDGSYMWVQIKESIPARDRKLE--EVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + + + + + R LE + ++ + K AE+ + Sbjct: 411 PIVMGNKVVLLQLVDR----AVRPLEASQKRALAREVLQRQKAAEDFDELVRDVRAR 463 >gi|237806951|ref|YP_002891391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis DSM 9187] gi|237499212|gb|ACQ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis DSM 9187] Length = 93 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ + +A + + L G F QLA++ S LG F K + S +++F Sbjct: 9 HILVKTEAQALDIMKQLAAGADFQQLAKKYSTCPSKKRGGDLGEFKKGDMV-ASFDNAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L + + FGY I V Sbjct: 68 SCELLQP---VGPVKTRFGYHIIKV 89 >gi|115360188|ref|YP_777326.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] gi|115285476|gb|ABI90992.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] Length = 245 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 14/232 (6%) Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228 V G+ + +D+A R + + A A L Q ++ A E Sbjct: 4 VNGVPITQAQVDEAVRLSKAPDTPALRAALKNQLIARELFRQAALKQHYDTKPQVVAAVE 63 Query: 229 YKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287 + ++ + ++ K + +++ +++A Y+ E + + + A + Sbjct: 64 QAKALAMTQAYLRDQVKPVPVTDADVKARYDAIVATLGENEYKP-SVIAVNDADTAKQII 122 Query: 288 QSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVS--------LADSIFSLAKKG 336 L+KG+ F LA E K + +L S + + LA+++ L + G Sbjct: 123 ARLRKGEDFGALAREFSKGPSAAQSGALNWISFKTPIEAGHTQNWPQQLAEALVKLPQGG 182 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 + Y I + + + +F + K + Q+ A EK Sbjct: 183 LTREPVQIGDMYWIVRADDKRQTQVPTFDQAKDTLRQQL-EQVAVEKATAQV 233 >gi|170585656|ref|XP_001897598.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin [Brugia malayi] gi|158594905|gb|EDP33482.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin [Brugia malayi] Length = 126 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ Q +A EA + LK G KF ++A + + LG ++ + + D+ Sbjct: 34 KVRHILCEKQGKAMEAIEKLKSGSKFNEVAANYSEDKAKLGGDLGWMTRGSMVG-TFQDA 92 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L P + FGY I V K Sbjct: 93 AFALPNSTVDRPVYTDPPVRTQFGYHIIMVEAKK 126 >gi|315038920|ref|YP_004032488.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1112] gi|325957341|ref|YP_004292753.1| peptidylprolyl isomerase [Lactobacillus acidophilus 30SC] gi|312277053|gb|ADQ59693.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1112] gi|325333906|gb|ADZ07814.1| peptidylprolyl isomerase [Lactobacillus acidophilus 30SC] Length = 301 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 82/255 (32%), Gaps = 28/255 (10%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 G + + +++ + L + E + Y Sbjct: 25 SNGGSNSTVASYKGGKITQQQYYDEMKKSQAGKSTLANMIINRALEQQYGKY-------- 76 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEK 259 S+ + + + YK Y + + ++ ++ +S L+ + Sbjct: 77 -----VSSKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQALKHIKKI 131 Query: 260 NKEKYFSP-----EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-- 312 +K++ TV+ ++ + A + LK GK F LA++ + + Sbjct: 132 SKKQEQQAWKSYQPKVTVQHILVAKKSTAQSIIKQLKDGKSFKSLAKKYSLDTATKNKAG 191 Query: 313 ---GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 S + D S + F L + + GY + + + P+ F + KK Sbjct: 192 KLPAFDSTDNTLDSSFKTAAFKLKTGEVTSTPVKSQSGYHVIKMIS-HPAKGK-FADHKK 249 Query: 370 DIANQMRITKASEKV 384 I +++ + A ++ Sbjct: 250 AIDDEIYASMAQDQA 264 Score = 41.1 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 33/168 (19%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + +STV S K+ + + + K L N++ Sbjct: 26 NGGSNSTVASYKGGKITQQQYY--------------------DEMKKSQAGKSTLANMII 65 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + ++ Sbjct: 66 NRALEQQ---YGKYVSSKKVDK---QYNNYKKQYGS----QFSAVLQQNGMTASSFKENL 115 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 L + + S QA + Y +V +I++ + Sbjct: 116 KTNLLSEQALKHIK---KISKKQEQQAWKSYQPKVTVQHILVAKKSTA 160 >gi|330827221|ref|YP_004390524.1| chaperone surA [Alicycliphilus denitrificans K601] gi|329312593|gb|AEB87008.1| Chaperone surA [Alicycliphilus denitrificans K601] Length = 471 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 42/402 (10%), Positives = 112/402 (27%), Gaps = 66/402 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + ++ +S + G + L K++L+ L+ Q Sbjct: 70 VAVVNSEPITNNEVRQRAERVAQQLSGQ-GAAMPPHEV----LVKEVLERLILEKIQVQL 124 Query: 103 IEDIGLEADHGRVWGEIARSPLFHG-----------KDNKFSHDVFVSRLARE----GIN 147 ++ G++ D V + S + F L + + Sbjct: 125 AKEGGIKVDDYAVNQAEQNVAR-QNDVSVDEMHRRLAADGISKERFREELRNQLLALRVR 183 Query: 148 EKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLL----------------DQAKRFYFENR 190 E++ L + P + + + A+R Sbjct: 184 ERDVESRVRVSDLEVDQYLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQE 243 Query: 191 SVDYIVLNNRHVPAIADPSN--------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 +D + + + S+ + + ++Y + + + + Sbjct: 244 VLDKLRAGGDFGVLVQEYSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRS 303 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----- 292 I L+ ++ ++++A E + L++ Sbjct: 304 PAGFHI----LKVVDRSQGGVPTMAVQSHARHILLRVGSGLSERQAAERLEDLRQRVLRG 359 Query: 293 GKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F LA E G + LG +++ +L + G+ + + FG Sbjct: 360 QADFATLAREYSQDGSAKDGGDLGWAGPGRYV-PEFQEALNAL-RPGEISQPVVSRFGVH 417 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + + ++ + + + +R K E + Sbjct: 418 LIQLLERREAKLTQREQ-RDMVRDAVREKKLDEAFTTWIQEA 458 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 44/393 (11%), Positives = 104/393 (26%), Gaps = 46/393 (11%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHVPAIA-- 206 + G L+ + +R E V + Sbjct: 82 EVRQRAERVAQQLSGQGAAMPPHEVLVKEVLERLILEKIQVQLAKEGGIKVDDYAVNQAE 141 Query: 207 -------DPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 D S + + K+ +R ++ + + E ++ +S+ E+ + Sbjct: 142 QNVARQNDVSVDEMHRRLAADGISKERFREELRNQLLALRVRERDVESRVRVSDLEV-DQ 200 Query: 257 YEKNKEKYFSPEIRTVE--QLVFPNQ------------KEADEAFQSLKKGKKFIQLAEE 302 Y ++++K P + ++ A E L+ G F L +E Sbjct: 201 YLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQEVLDKLRAGGDFGVLVQE 260 Query: 303 QGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 G + L + A G + G+ I V + Sbjct: 261 YSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRSPAGFHILKVVDRSQGGV 320 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA----LGTSMDEISRREKIVSIDLPL 417 + V+ + + + ++ +RLE+ ++R Sbjct: 321 PTMA-VQSHARHILLRVGSGLSERQAAERLEDLRQRVLRGQADFATLAREYSQDG----S 375 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G +P ++ L + + + +Q+ E A+ Sbjct: 376 AKDGGDLGWAGPGRYVPEFQEALNAL-----RPGEISQPVVSRFGVHLIQLLERREAKLT 430 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + E+ V+ + K E ++ + Sbjct: 431 QREQ-RDMVRDAVREKKLDEAFTTWIQEARARA 462 >gi|322788443|gb|EFZ14112.1| hypothetical protein SINV_03411 [Solenopsis invicta] Length = 129 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G+KF ++A + S LG ++ + D+ Sbjct: 37 KVRHILCEKQSKILEALEKLKAGQKFNEVAATYSEDKARSGGDLGWMTRGSMVGP-FQDA 95 Query: 329 IFSLAKKGDFTPVI-----HGSFGYVIAHVSNIK 357 F+L +PV FGY I V K Sbjct: 96 AFALPISSLASPVYTDPPVKTKFGYHIIMVEGKK 129 >gi|227537536|ref|ZP_03967585.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227242673|gb|EEI92688.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 458 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 65/401 (16%), Positives = 136/401 (33%), Gaps = 62/401 (15%) Query: 136 VFVSRLAREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + LA+ G++ E Y + + + + S +D Sbjct: 46 QYSQNLAQ-GMSPNEDFKCYILQQLLTQKLLAQQAVLDSIEVSESEVDDNLNNRL----- 99 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK----KIEI 248 +V L + + Y+ E + + ++ KI++ Sbjct: 100 --------NVMTRQAGGKERLESFLNRSLLQYK-EEMRTSVAEQLKAQKMQQNIVQKIDV 150 Query: 249 SNDELQAEYE---KNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKF 296 + E++ +E K+ YF E+ E +++P ++K A++ + + G F Sbjct: 151 TPLEVKRYFEGLNKDSLPYFDTEVEIGEIVMYPVLTKEEKEASRKRAEDLRKQIVDGSDF 210 Query: 297 IQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A E++G +++ LG +++ + F L K G+ + V +G+ Sbjct: 211 GTIARLYSEDKGSAVAGGDLGFSTRDNYVK-EFSAVAFKL-KPGEISQVFETEYGFHFLQ 268 Query: 353 VSNIKPSFTVSFQEVKKD-IANQMRITKAS-EKVKEDYKRL-EEFLALGTSMDEISRREK 409 V + +EV+ I ++ T AS E+ K L ++ + + + Sbjct: 269 VLERRG------EEVRARHILVSIKPTNASLERTKVKMDSLYQKLINKKIDFYNAATQYS 322 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPD 460 D F G V + + + +L VF DPL Sbjct: 323 ----DNKETKFNGGMVTDQNRSTLIPVNKLEASVFTAIDPLKAGEYSQPTLFQEEGPAGK 378 Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 Y +K IP L++ + +K+ KT ++S Sbjct: 379 SGYRISFLKTRIPPHKANLDQDFSKIKEAASEDKTRRKLSE 419 >gi|194366009|ref|YP_002028619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia R551-3] gi|194348813|gb|ACF51936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas maltophilia R551-3] Length = 299 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 26/207 (12%) Query: 225 RAPEYKRIS-YILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 +APE R+S + E IE ++++ + +E+N E++ SP+ + ++ Sbjct: 97 QAPEGNRVSDEEVLIQQLLEDAIEDRVPTDEDCRRYFEQNPERFRSPDRVRLRHILLAAP 156 Query: 281 KEADEAFQSLKK---GKK-----------FIQLAEEQG---KSLSDISLGSFSKEYIPDV 323 AD+ G++ F A S LG + Sbjct: 157 --ADDVAGRFAARTEGERLVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTT-P 213 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 +F L + G + +GY + V + F+ V + + + + + Sbjct: 214 EFDRQVFRLRE-GLAGFPVESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQRE 272 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKI 410 V+ +L+E +DEI I Sbjct: 273 VQAYLLQLQE-RYPVRGLDEIDAEADI 298 >gi|220930452|ref|YP_002507361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulolyticum H10] gi|220000780|gb|ACL77381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium cellulolyticum H10] Length = 363 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 101/278 (36%), Gaps = 44/278 (15%) Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRT---DVVGMFVGGMRPSNLLLDQAKRFYFEN 189 F +G KE I T + ++ G++ LD + + Sbjct: 74 DPAKFDWNQKYQGSTAKEQIKKATLDSIQEIKIQLIKAKEAGIKLEKTDLDNIEAAINQR 133 Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249 ++ ++ L Q + +Y+ YK + + + K+++ Sbjct: 134 ---------IQNAGGSRSQADKQLKQDYGVSLADYKEV-YKELVLSQKYIESERNKVKVP 183 Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-----------------EADEAFQSLKK 292 ++E++ +Y+ +K Y + TV ++ Q +A+ + +++ Sbjct: 184 DEEVKKQYDDHKADY---DKVTVTHILIATQDLQTGAAFTEGKKKEAKDKAENLLKQIQE 240 Query: 293 GKKFIQLA------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 G LA ++Q ++++ + +F K + D F+ K GD T ++ S+ Sbjct: 241 GADMQALAEKNSDDKDQNGAVNNKGVYTFVKGQMV-PQFEDWAFANRKAGD-TGIVETSY 298 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 GY + + + + +VK I + + K ++ Sbjct: 299 GYHVMRFEKREETK---YDDVKDQIKSTILNKKFEDEF 333 >gi|298370084|ref|ZP_06981400.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281544|gb|EFI23033.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str. F0314] Length = 290 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 66/161 (40%), Gaps = 7/161 (4%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 K+ + +++ Y + Y + + Q+ + ++A +A + L+ K F Sbjct: 125 AMHIAKQNPVQEKDIKTAYNDFSKFYKGTQEVQLGQIAARSNEDAQKAIKDLEAKKSFAN 184 Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIA 351 + ++ G ++ Y+P L +I L K G + + Y + Sbjct: 185 VLKQYSVDEQAKKAGGIARGYVPLKDLEQSAPPLYAAIKDLKKGGFTSAPLPNGNVYSVF 244 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 ++++ + S++E+K +I ++++ ++ + ++ + Sbjct: 245 YINDRRDIKVPSYEEMKNEIGSELQASRIDAAIGALMQKAD 285 >gi|255011715|ref|ZP_05283841.1| putative exported isomerase [Bacteroides fragilis 3_1_12] gi|313149550|ref|ZP_07811743.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12] gi|313138317|gb|EFR55677.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12] Length = 517 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 59/436 (13%), Positives = 131/436 (30%), Gaps = 60/436 (13%) Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE-----------QLVFPNQK 281 +Y + Y++ K + S E+R + + Q Sbjct: 91 NYHRSLSKSYLTDSSAEEACARKLYDQMKSRSISGEVRVMHIFRYLPQTALPHHLREAQA 150 Query: 282 EADEAFQSLKKG--KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 D + LK F L ++ ++ + + FSL K G+++ Sbjct: 151 LMDSLYNVLKTNPDTDFRTLVDQYSDDKAESWISWLQTP----QEFEEVAFSL-KDGEYS 205 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALG 398 G I V+ + F++++ + ++ ++K E +L+E + Sbjct: 206 QPFFTPKGLHIVKVTGRRE--LPPFEQIRDRLIRKLSYRPGADKGTEILVNKLKE--SYR 261 Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458 + D+ + E + F + GK ++ G L ++ Sbjct: 262 YTPDKAAMEELLSQGKTSRTLFT---LDGKNFTGKDFERFAAAHPMGTKRQLDAFVVKSI 318 Query: 459 PDGSYMWVQIKESIPARDRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517 D Y +++ P R L+E + +T + + + L + + ++ Sbjct: 319 LD--YENSHLEQKHPEFRRTLQEHRDHLLLAAITRRETHQVSLADSVALKNFFKEHRTDY 376 Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFG-------YDGISQVFSGPVE----MVKCFPIE 566 ++L + + KF D I F+ P ++ Sbjct: 377 NWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPAIIRIEQGTFA 436 Query: 567 NGLSYVVFKVT-------------------NSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607 G + V K+ K GP K+ +S L + L Sbjct: 437 EGDNVFVDKLVFKKGNFEPLKSYPFTVVLGEKKKGPESYKE-IVSRLIEDYQNHLDALWT 495 Query: 608 AYLKSQYSVTVHDNLI 623 L++ V ++ ++ Sbjct: 496 ERLRASAKVEINQEVL 511 >gi|163858778|ref|YP_001633076.1| peptidyl-prolyl cis-trans isomerase C [Bordetella petrii DSM 12804] gi|163262506|emb|CAP44809.1| peptidyl-prolyl cis-trans isomerase C [Bordetella petrii] Length = 93 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + ++ + + +E +++ G F Q+A E S +LG+F + Sbjct: 2 AQASARHILVSTEAKCNELKAAIEGGADFAQVARENSSCPSARDGGNLGTFGPGQMVK-E 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A G + FGY + V++ + Sbjct: 61 FDTVVFS-APVGVVQGPVKTQFGYHLVEVTDRQ 92 >gi|85058404|ref|YP_454106.1| peptidyl-prolyl cis-trans isomerase SurA [Sodalis glossinidius str. 'morsitans'] gi|121956483|sp|Q2NVX4|SURA_SODGM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|84778924|dbj|BAE73701.1| survival protein SurA precursor [Sodalis glossinidius str. 'morsitans'] Length = 431 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 40/367 (10%), Positives = 105/367 (28%), Gaps = 53/367 (14%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG----- 127 N + L ++ILD L+ + Q + + ++ I Sbjct: 54 QEANQQLPDDTTLRRQILDRLIMDNIILQLAQRTNITISDEQLDQAIGNIAA-QNHMSLD 112 Query: 128 ------KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS---------RTDVVGMFVGGM 172 + ++ + +++ +E + + + ++ + G Sbjct: 113 QLRSRLPYDGIDYNTYRTQIRKEMLIAEVRNGEVRRRVTILPQEVESLAQQIAAQTGNGA 172 Query: 173 ----------RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222 P N DQ + S+ + +A +A Sbjct: 173 EFNLSHILIPLPENPTQDQLDKAEELATSIVEQSKSGADFGKLAITYSADAQALKGGQMG 232 Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR-----TVEQLVF 277 + E + +K + + K + + ++ Sbjct: 233 WGKLEELPSLFAARLQGAQKGSIVGPIRSGVGFHILKVNDIRGGDQKVAVTEVHARHIML 292 Query: 278 ---------PNQKEADEAFQSLKKGK-KFIQLAE----EQGKSLSDISLGSFSKEYIPDV 323 + + ++ +K G+ F A+ + G + LG S + D Sbjct: 293 RTSVVMTDQQARAKLEDIAAQIKSGRISFAAAAKQLSEDPGSANQGGDLGWSSADAF-DP 351 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 + +++ L KKG+ + +H SFG+ + + + + + K + K +E+ Sbjct: 352 AFRNALMHL-KKGEISTPVHSSFGWHLIQLIDTR-QVDRTDAAQKDRAYRLLFNRKFAEE 409 Query: 384 VKEDYKR 390 + + Sbjct: 410 AQTWMQE 416 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 95/308 (30%), Gaps = 35/308 (11%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--- 278 + YR K + E +++ I E+++ ++ + + + ++ P Sbjct: 126 NTYRTQIRKEMLIAEVRNGEVRRRVTILPQEVESLAQQIAAQTGNGAEFNLSHILIPLPE 185 Query: 279 ---------NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADS 328 ++ A + K G F +LA + G + + SL + Sbjct: 186 NPTQDQLDKAEELATSIVEQSKSGADFGKLAITYSADAQALKGGQMGWGKLEELPSLFAA 245 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-SFQEVKKD---IANQM--RITKASE 382 A+KG I G+ I V++I+ + EV + + +A Sbjct: 246 RLQGAQKGSIVGPIRSGVGFHILKVNDIRGGDQKVAVTEVHARHIMLRTSVVMTDQQARA 305 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K+++ +++ + K +S D + G A P L Sbjct: 306 KLEDIAAQIKSGRI------SFAAAAKQLSEDPGSANQGGDLGWSSADAFDPAFRNALMH 359 Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR--DRKLEEVLTDVKKDWKTVKTAEEVS 500 + K ++ P S + + I R DR + K AEE Sbjct: 360 L--------KKGEISTPVHSSFGWHLIQLIDTRQVDRTDAAQKDRAYRLLFNRKFAEEAQ 411 Query: 501 SKANQLVL 508 + + Sbjct: 412 TWMQEQRA 419 >gi|145299728|ref|YP_001142569.1| peptidyl-prolyl cis-trans isomerase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852500|gb|ABO90821.1| peptidyl-prolyl cis-trans isomerase [Aeromonas salmonicida subsp. salmonicida A449] Length = 92 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328 + ++ +K+ E + L KG F Q+A+ S LG FSK + D+ Sbjct: 6 AQHILVKTEKQCLEIKEKLAKGADFGQMAKRFSTCASSKRSGDLGEFSKGDMVKP-FDDA 64 Query: 329 IFSLAKKGD---FTPVIHGSFGYVIAHV 353 +F KG+ + FG+ + V Sbjct: 65 VF----KGELLTVLGPVRTKFGFHLIKV 88 >gi|115360451|ref|YP_777588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] gi|115285779|gb|ABI91254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ambifaria AMMD] Length = 262 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 18/171 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296 E + + Y ++ ++ +I ++F ++ A+ A + F Sbjct: 86 EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADVVAAPDTF 145 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A E + SLG + ++F G ++ FG+ I + Sbjct: 146 EAVARESSNCPSAQVGGSLGQLLRGDTV-PEFEAALFDTDGLGVLPKLVDTRFGFHIVRI 204 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 P V F E IA + + ++ Y + LA G ++ + Sbjct: 205 ERRIPGDVVPFDEAAGQIAAYL-SERVRQRAMRQYVAI---LAAGARVEGV 251 >gi|304398127|ref|ZP_07380002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB] gi|304354413|gb|EFM18785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB] Length = 93 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ + A E L KG F +LA++ S LG F + + + ++F Sbjct: 9 HILVKEEALAKEILAKLAKGGNFQELAKKHSTCPSGRKGGDLGEFRQGQMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 + L + FGY I V Sbjct: 68 TCPLLTP---YGPVKTGFGYHIIKV 89 >gi|330821358|ref|YP_004350220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] gi|327373353|gb|AEA64708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] Length = 264 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 18/171 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----------QKEADEAFQSLKKGKKF 296 + + + + Y + E++ E+ ++F ++ + L ++F Sbjct: 88 KPTEADCRRYYTHHPERFRQGELVHASHILFAVTERVPLAPLRERAEAALAEVLAAPERF 147 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 LA E + SLG + ++F G +++ G+ I + Sbjct: 148 EALARESSNCPSAAVGGSLGQLLRGDCV-PEFEAALFGNEALGVLPGLVNTRHGFHIVRI 206 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 P F+ V IA + + Y + LA ++ I Sbjct: 207 ERRVPGELQPFEAVSGRIAGFLA-ERVRRDAMHQYVAI---LAGAARIEGI 253 >gi|158429505|pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The Second Peptidyl-Prolyl Isomerase Domain Complexed With Peptide Nftlkfwdifrk gi|158429506|pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The Second Peptidyl-Prolyl Isomerase Domain Complexed With Peptide Nftlkfwdifrk Length = 299 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 96/336 (28%), Gaps = 74/336 (22%) Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115 + S K Q++ L +I++ L+ + Q + +G++ ++ Sbjct: 25 LMQSVKLNAAQARQQLP--------DDATLRHQIMERLIMDQIILQMGQKMGVKISDEQL 76 Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175 IA K N + D SRLA +G+N Y + K + ++V Sbjct: 77 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN--------- 123 Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235 V + ++ + A +S+I Sbjct: 124 ------------------------NEVRRRITILPQEVESLAQQVGNQNDASTELNLSHI 159 Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295 L + E +++ E +A + G Sbjct: 160 LIPLPENPTSDQVNEAE----------------------------SQARAIVDQARNGAD 191 Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 F +LA ++ G I + + S AKKGD I G+ I V+ Sbjct: 192 FGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN 251 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 +++ K + K SE+ + Sbjct: 252 DLRGESKNISAAQKDRAYRMLMNRKFSEEAASWMQE 287 >gi|218885414|ref|YP_002434735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756368|gb|ACL07267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 94 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 ++ + +E + G+ F ++A K S LG F + + + Sbjct: 5 KARHILVDTEDACNELKARILAGEDFAEVARAHSKCPSGRRGGDLGEFPRGAMV-PEFDE 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +F+ + G + FG+ + V+ Sbjct: 64 VVFT-GEVGTVLGPVRTQFGHHLIEVTAR 91 >gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related) [Herminiimonas arsenicoxydans] gi|133738768|emb|CAL61815.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Herminiimonas arsenicoxydans] Length = 248 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 19/169 (11%) Query: 240 HEKEKKIEISNDELQA---EYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAF 287 +++ + + + A Y +++ S E+ ++F ++ + Sbjct: 62 ALFAQEVRVPDADEAACATFYRNQPQRFTSGELVEARHILFQVTPSVPLELLRETGEAVL 121 Query: 288 QSLK-KGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VI 342 L+ ++F +LA E S +LG ++ +F L + G+ ++ Sbjct: 122 AELRVHPERFAELAREYSNCASGTVGGNLGQLTRGQTV-PEFEALVFRLPE-GELADRLL 179 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 FG I V V + VK IA+ + V + + L Sbjct: 180 ETRFGLHIVQVLRRVAGEVVPLEAVKAQIADHLSRQAWQRAVHQYLQIL 228 >gi|330684763|gb|EGG96458.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis VCU121] Length = 330 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 76/203 (37%), Gaps = 42/203 (20%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQ 288 KI++S+ E++ + ++ + K+A + + Sbjct: 124 ELLNDKIKVSDKEIKDN------------TKKASHILIKVKSKDSDKEGLSDKKAKQKAE 171 Query: 289 SLKK-----GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 ++K KF ++A+ ++ + D SLG +K + + S ++F L K+G+ + Sbjct: 172 EIQKEVSKDPSKFGEIAKKESMDKSSAKKDGSLGYVTKGQMME-SFDKALFKL-KEGEVS 229 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS---EKVKEDYKRLEEFLA 396 V+ +GY I F K ++ +++ K + + + YK + + Sbjct: 230 KVVKTDYGYHIIK-----ADKETDFNSEKSNLKSKILEQKIQKDPKLLTDAYKEILDEYK 284 Query: 397 LGTSMDEISRREKIVSIDLPLVD 419 + +I + +D + Sbjct: 285 VDYKDRDIKKAVDDTILDPDKIK 307 >gi|224536048|ref|ZP_03676587.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus DSM 14838] gi|224522331|gb|EEF91436.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus DSM 14838] Length = 513 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 26/219 (11%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----------EQLVFPNQKE 282 Y +S + Y+K K + +IR ++ + Sbjct: 91 YRRQLAKAYLTDESVSELAARQVYDKMKANNRAGQIRVSHIFKFLPQTVTSHVLRSAEAR 150 Query: 283 ADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 D + +L+ G F + + V D +F+L K+G+ + Sbjct: 151 MDSLYAALQNGQADFDECVRNFSDEKKSFWVSWLQ----MPVEFEDVVFAL-KQGEISRP 205 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDI----ANQMRITKASEKVKEDYKRLEEFLAL 397 G I K + F++VK +I + + + + +E + E K+ ++ A Sbjct: 206 FFTPQGIHIVKAIERKE--ILPFEKVKDEIMRRQSRRYGMDRGTEALVEKLKKEYQYTAD 263 Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436 T +DE+ + + D L G++ GK AA Sbjct: 264 KTGVDELLSKGQ---TDKRLFTLDGREYTGKMFAAFAAS 299 >gi|190574687|ref|YP_001972532.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family protein [Stenotrophomonas maltophilia K279a] gi|190012609|emb|CAQ46237.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family protein [Stenotrophomonas maltophilia K279a] Length = 299 Score = 71.9 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 26/207 (12%) Query: 225 RAPEYKRIS-YILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 +APE R+S + E I+ S+++ + +E+N E++ SP+ + ++ Sbjct: 97 QAPEGNRVSDEEVLIQQLLEDAIKDRVPSDEDCRRYFEQNPERFRSPDRVRLRHILLAAP 156 Query: 281 KEADEAFQSLKK---GKK-----------FIQLAEEQG---KSLSDISLGSFSKEYIPDV 323 AD+ G++ F A S LG + Sbjct: 157 --ADDVAGRFAARTEGERLVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTT-P 213 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383 +F L + G + +GY + V + F+ V + + + + + Sbjct: 214 EFDRQVFRLRE-GLAGFPVESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQRE 272 Query: 384 VKEDYKRLEEFLALGTSMDEISRREKI 410 V+ +L+E +DEI I Sbjct: 273 VQAYLLQLQE-RYPVRGLDEIEAEADI 298 >gi|260891097|ref|ZP_05902360.1| putative chaperone SurA [Leptotrichia hofstadii F0254] gi|260859124|gb|EEX73624.1| putative chaperone SurA [Leptotrichia hofstadii F0254] Length = 608 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 56/468 (11%), Positives = 140/468 (29%), Gaps = 50/468 (10%) Query: 2 LEIIRKASRTW--VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSS 55 + + R + V+ + + + + LI G+ ++ +++ + +V K+ Sbjct: 1 MGLFRSHKKAIQIVSAVMIGIFGIAMLITGILFLKNNVFGAMNHREVIATVNGAKIYRDD 60 Query: 56 FINS---WKQELGMISQKIGFVVNSERARSVGLDKK--------ILDNLVSGATLDQFIE 104 F K +L I+Q+ ++ + + +L +++ L Sbjct: 61 FDRESYGLKAQLSEINQQKIQQLSQVGVSAENIKNIPDNIINEYVLQLMINKEVLLSSAH 120 Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164 ++G++ + E K ++ + F L G N + K + + Sbjct: 121 NLGIKVSGAEINKEFNNYQ----KQSQMNRKEFADHLRNRGYNITSF----KKAIKDEKI 172 Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV--------LTQW 216 + + ++ + D+ + +E LN + L + Sbjct: 173 IEKMREKIFSNDKVTDEEIKKAYERNKYTQAFLNQDFEDVKEQIRENMTQDKNIMILKSY 232 Query: 217 FEKYKDN----YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 K K+ ++ ++++I + + + +N+ + + + Sbjct: 233 IAKAKEKTKIVFKNKDFEKIYASMTAAVAQNGDYKYTNEAVNEQLINLVSQTQQGYSDKA 292 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAE-------EQGKSLSDISLGSFSKEYIPDVSL 325 + K + F + K + EQ + S Y PD + Sbjct: 293 VNDLKATLKTNLDKFVKISNKAKAAGIKADPELTGVEQLRDYSQKYYNYLIDTYKPDEAA 352 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385 + F+ K D + + GYVI + F+ KK A + T + Sbjct: 353 LQAKFNAKK--DSYNIPNSIGGYVI---GEEYQAGDGDFEAAKKQ-AQDIMKTTNKDNFA 406 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433 K + + + + + + G V I Sbjct: 407 AKAKEFSKDPGSANNGGSLGETADLSQLVPEFANAVKSGKAGDIVGPI 454 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 118/359 (32%), Gaps = 38/359 (10%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 ++G ++K D + + D + + + D + R N ++ Sbjct: 285 QQGYSDKAVNDLKATLKTNLDKFVKISNKAKAAGIKADPELTGVEQLRDYSQKYYN--YL 342 Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262 P A L F KD+Y P Y+ + EY+ Sbjct: 343 IDTYKPDEAALQAKFNAKKDSYNIPNSIG-GYV-----------------IGEEYQAGDG 384 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322 + + + + ++ K+ A + +++ G + + SLG + Sbjct: 385 DFEAA-KKQAQDIMKTTNKDNFAAKAK--------EFSKDPGSANNGGSLGETADLSQLV 435 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 A+++ S K GD I FGY I ++ + K + + +V + + + Sbjct: 436 PEFANAVKS-GKAGDIVGPIKTQFGYHIIYIQS-KDANNENVAKVSHILITPTISEASKQ 493 Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442 K+ + + L+ + G ++ + + K VK + I ++L+ + Sbjct: 494 KIIKKVQDLKAEIESGKVTWSTVEKQDKYKFSVK--ERFKKMVKSDAIPGIGKNDELMNQ 551 Query: 443 VFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500 +F L KD + D Y + IP E V+ + +E+ Sbjct: 552 IFA----LKKDGILERNDASGYYLITKTSEIPFTQATFENSKERVRLELAHEYADKELE 606 >gi|256084172|ref|XP_002578305.1| rotamase [Schistosoma mansoni] gi|238663674|emb|CAZ34543.1| rotamase, putative [Schistosoma mansoni] Length = 1421 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK GK+F Q+AE + S LG S+ + + D+ Sbjct: 1329 KVRHILCEKQSKCLEALEQLKNGKRFNQVAEIYSEDKARSGGDLGWMSRGSMVG-AFQDA 1387 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L P + +GY I V + Sbjct: 1388 AFNLPISTLENPKYTDPPVKTQYGYHIIMVEGRR 1421 >gi|319765026|ref|YP_004128963.1| sura domain protein [Alicycliphilus denitrificans BC] gi|317119587|gb|ADV02076.1| SurA domain protein [Alicycliphilus denitrificans BC] Length = 471 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 42/402 (10%), Positives = 112/402 (27%), Gaps = 66/402 (16%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V V + + + ++ +S + G + L K++L+ L+ Q Sbjct: 70 VAVVNSEPITNNEVRQRAERVAQQLSGQ-GAAMPPHEV----LVKEVLERLILEKIQVQL 124 Query: 103 IEDIGLEADHGRVWGEIARSPLFHG-----------KDNKFSHDVFVSRLARE----GIN 147 ++ G++ D V + S + F L + + Sbjct: 125 AKEGGIKVDDYAVNQAEQNVAR-QNDVSVDEMHRRLAADGISKERFREELRNQLLALRVR 183 Query: 148 EKEYIDHYT-KMLSRTDVVGMFVGGMRPSNLLL----------------DQAKRFYFENR 190 E++ L + P + + + A+R Sbjct: 184 ERDVESRVRVSDLEVDQYLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQE 243 Query: 191 SVDYIVLNNRHVPAIADPSN--------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242 +D + + + S+ + + ++Y + + + + Sbjct: 244 VLDKLRAGGDFGVLVQEYSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRS 303 Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK----- 292 I L+ ++ ++++A E + L++ Sbjct: 304 PAGFHI----LKVVDRSQGGVPTMAVQSHARHILLRVGSGLSERQAAERLEDLRQRVLRG 359 Query: 293 GKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F LA E G + LG +++ +L + G+ + + FG Sbjct: 360 QADFATLAREYSQDGSAKDGGDLGWAGPGRYV-PEFQEALNAL-RPGEISQPVVSRFGVH 417 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + + ++ + + + +R K E + Sbjct: 418 LIQLLERREAKLTQREQ-RDMVRDAVREKKLDEAFTTWIQEA 458 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 44/393 (11%), Positives = 104/393 (26%), Gaps = 46/393 (11%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV---LNNRHVPAIA-- 206 + G L+ + +R E V + Sbjct: 82 EVRQRAERVAQQLSGQGAAMPPHEVLVKEVLERLILEKIQVQLAKEGGIKVDDYAVNQAE 141 Query: 207 -------DPSNAVLTQWFEKY---KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256 D S + + K+ +R ++ + + E ++ +S+ E+ + Sbjct: 142 QNVARQNDVSVDEMHRRLAADGISKERFREELRNQLLALRVRERDVESRVRVSDLEV-DQ 200 Query: 257 YEKNKEKYFSPEIRTVE--QLVFPNQ------------KEADEAFQSLKKGKKFIQLAEE 302 Y ++++K P + ++ A E L+ G F L +E Sbjct: 201 YLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRAARAQEVLDKLRAGGDFGVLVQE 260 Query: 303 QGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 G + L + A G + G+ I V + Sbjct: 261 YSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIVGPLRSPAGFHILKVVDRSQGGV 320 Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA----LGTSMDEISRREKIVSIDLPL 417 + V+ + + + ++ +RLE+ ++R Sbjct: 321 PTMA-VQSHARHILLRVGSGLSERQAAERLEDLRQRVLRGQADFATLAREYSQDG----S 375 Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477 G +P ++ L + + + +Q+ E A+ Sbjct: 376 AKDGGDLGWAGPGRYVPEFQEALNAL-----RPGEISQPVVSRFGVHLIQLLERREAKLT 430 Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510 + E+ V+ + K E ++ + Sbjct: 431 QREQ-RDMVRDAVREKKLDEAFTTWIQEARARA 462 >gi|88857634|ref|ZP_01132277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas tunicata D2] gi|88820831|gb|EAR30643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas tunicata D2] Length = 274 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 17/195 (8%) Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271 + K + E K+ + ++ +++ ++ +++ Y +N+E+Y S + + Sbjct: 78 ESQTEYSDEKLAFELFEIKKDLLLNRYFNQYLEQV-VTETDMRNYYAQNQEQYQSQQAKV 136 Query: 272 VEQLVFPNQKE-----------ADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFS 316 L+ N + A EA+ + G F +A E++ + LG Sbjct: 137 SHILLRVNPADDETTRQAKYSKAVEAYSKINTGSDFSVVAQSLSEDRVSAKKGGQLGWIK 196 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 I + +D++F+ K G + I FGY + + + SF+ V+ +I +R Sbjct: 197 AGAI-GATFSDTVFNQLKAGQVSEPILTDFGYHVILLEQEPKTVKRSFESVQGNIKRSLR 255 Query: 377 ITKASEKVKEDYKRL 391 ++ + Sbjct: 256 KAAKDAELARLQSTV 270 >gi|126443707|ref|YP_001062622.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia pseudomallei 668] gi|126223198|gb|ABN86703.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 668] Length = 265 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296 E + D + Y + ++ +I ++F ++EA+ L + + F Sbjct: 89 EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A E + SLG + ++F G +++ FG+ I + Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V +IA + A + ++ LA G ++ ++ Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVHHKAIQQYVTILASGARIEGVA 255 >gi|56461330|ref|YP_156611.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis L2TR] gi|81678272|sp|Q5QVN9|SURA_IDILO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl cis-trans isomerase surA; Short=PPIase surA; AltName: Full=Rotamase surA; Flags: Precursor gi|56180340|gb|AAV83062.1| Periplasmic parvulin-like peptidyl-prolyl isomerase (two homologous domains) [Idiomarina loihiensis L2TR] Length = 432 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 44/400 (11%), Positives = 119/400 (29%), Gaps = 63/400 (15%) Query: 60 WKQELGMISQKI--GFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116 + ++ + Q++ G NS A S L+ + ++ L+ Q +G+E D ++ Sbjct: 43 LQSQIDQLIQQVKNGQNFNSSNAPSDEVLETQAIERLILQEIQLQMANRMGIEIDDNQLE 102 Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPS 175 I + + G++ Y ++ L + + + Sbjct: 103 QAINEIANNQDLTTAELREN----MVSSGMSWAAYRENIRNELVIQQVQRAAVQQRVSIT 158 Query: 176 NLLLDQAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFE---------KYKDNYR 225 ++ + N+ V L + A ++ S A L + E ++ Sbjct: 159 PQEINNLVKLIESNQEVQTEYRLAQILISADSNSSQAELEKAKERANTVLNLLDKGSDFA 218 Query: 226 APEYKR-----------ISYILFDVHEKEKKIEISNDE---------------LQAEYEK 259 + + ++ + + + +K Sbjct: 219 DLAVRSSSGSAALDGGDLGWMTVNGMPTLFAEAVDGKSVGDVVGPIRSGIGFHILKVQDK 278 Query: 260 NKEKYFSPEIRTVEQLVFP-----NQKEADEAF----QSLKKGKK-FIQLAEEQGKSLSD 309 E+ + ++ + +A E + + G+K F +LA E Sbjct: 279 RGEQTVEVQEVKARHILIKPSVILSDNKAKEMLNKYREQIASGEKTFAELAREHSADPGS 338 Query: 310 ISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 S G +++ + S+ + + FG+ I V+ + + Sbjct: 339 ASRGGDLGWARPNKYAPEFKQKVESIEQD-TISEPFSTQFGWHIVEVTGRR-----TLDA 392 Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406 +++ + S K +E+ ++ + + ++ Sbjct: 393 TEENKQERAYQMLFSRKFREELDNWQQEIRDQAFIRRVAE 432 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 8/164 (4%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---EEQGK 305 SN E+Q EY + S + + + + ++ A+ L KG F LA Sbjct: 171 SNQEVQTEYRL-AQILISADSNSSQAELEKAKERANTVLNLLDKGSDFADLAVRSSSGSA 229 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 +L LG + +P A+++ GD I G+ I V + + TV Q Sbjct: 230 ALDGGDLGWMTVNGMP-TLFAEAVDG-KSVGDVVGPIRSGIGFHILKVQDKRGEQTVEVQ 287 Query: 366 EVKKD-IANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRR 407 EVK I + + + K KE + E +A G + E++R Sbjct: 288 EVKARHILIKPSVILSDNKAKEMLNKYREQIASGEKTFAELARE 331 >gi|313675959|ref|YP_004053955.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa DSM 4126] gi|312942657|gb|ADR21847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa DSM 4126] Length = 449 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 55/397 (13%), Positives = 127/397 (31%), Gaps = 52/397 (13%) Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196 + RL+R G E + L + M S +L+ ENR Sbjct: 54 YKDRLSRGGQQSAEGRCEVLESLIVNKL--MLAKAEIDSVTVLESQVDAQLENR------ 105 Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE---KEKKIEISNDEL 253 + S + +++ K D ++ + + + +E++ ++ Sbjct: 106 ---MKMMVQQIGSEEKIEEYYGKSLDEFKVEIRDDVKEQMIIGEMQRTITQDLEVTPKQV 162 Query: 254 QAEYEKNKEKYFSP---EIRTVEQLVFP---NQKEADEAFQSLK-------KGKKFIQLA 300 Q ++ N K P V Q+V +++ + L +G+ F +A Sbjct: 163 QNFFD-NIPKDSLPFYSTQVQVGQIVKKPTMSREAKENIKARLNGLRERILEGENFEDIA 221 Query: 301 ----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +E G S ++G F + + + L K G+ + + FG+ I + + Sbjct: 222 RLYSQEPGAKQSGGNIGYFERGQLA-PEYEATALRL-KPGEISKPVETDFGFHIIELLDR 279 Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDL 415 + + F I + + EK + + + + ++ + Sbjct: 280 RGNE---FNTRHILILPKFTK-RDMEKSVQFLDSIRNLIIKDSITFEKAAAEYSDDMNTS 335 Query: 416 PLVDFA-GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI----KE 470 + + G +++ + F + + + V+I + Sbjct: 336 SSGGYFIESEAGGTKISVDELDPNIFFTIDTMEVGSITKPIIFRQQDRSEAVRIIYFKDK 395 Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507 P R D++KD++ +K A K+ +L Sbjct: 396 IRPHR--------ADIRKDYQKIKQAALNKKKSEKLA 424 >gi|77918484|ref|YP_356299.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77544567|gb|ABA88129.1| PPIase domain protein [Pelobacter carbinolicus DSM 2380] Length = 291 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 58/167 (34%), Gaps = 2/167 (1%) Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 + + + + K + +E++A ++ + E Y +P + V + ++ E + L Sbjct: 107 LKVMQDRLVPQIDKARFTEEEVKAYFDAHPESYVTPALYDVRIIKAADKAELESLVAELG 166 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS--IFSLAKKGDFTPVIHGSFGYV 349 G F + + G D I + G + + Sbjct: 167 GGLTFEEAVRTHSTDAATREKGGAVGRRPLKRFRPDWRGIVEKLEPGKVSEPTAIGDSWY 226 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 + + + +++ K + N + T+ E + Y++L++ + Sbjct: 227 LLKLEGKTEPVSHVYEDKKAYVRNDLLYTRYREAWQGTYEKLKKEFS 273 >gi|257125090|ref|YP_003163204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia buccalis C-1013-b] gi|257049029|gb|ACV38213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia buccalis C-1013-b] Length = 608 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 62/470 (13%), Positives = 153/470 (32%), Gaps = 61/470 (12%) Query: 48 RQKVPFSSFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106 K+ ++ E +Q + + + + + ++ + L + E Sbjct: 182 NDKITEEEIKKAY--ERNKYTQSFANQDFDDVKDQIKETMTQDKNIMILNSYLAKAKEKT 239 Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166 + +F K+ + + + +A+ G YT ++ Sbjct: 240 KI---------------VFKDKNFENMYTKVKAVVAQNG------EYKYTNEAVNEQIIN 278 Query: 167 MFVGGMRP-SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL---------TQW 216 + S+ L+++ K +N ++ ++ + A ++ ++ Sbjct: 279 SVSQTQQGYSDKLVNELKTTLKKNLD-KFVKISEKAKAAGIKADPDLIGVDQLRDYSQKY 337 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + D+Y+ + + + I + EY+ + + Sbjct: 338 YNYLIDSYKPDDATLQARFNAKRDSYNTQNSIGGYVIGEEYQAGESDFEG---------- 387 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSL 332 +K+ADE ++ K F A+E K + SLG + A+++ + Sbjct: 388 --AKKQADEIMKTTTK-DNFAAKAKEFSKDPESAKNGGSLGETADLSQLVPEFANAVKN- 443 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K GD I FGY I ++ + P + +V + + +KV + + L+ Sbjct: 444 GKAGDIVGPIKTQFGYHIIYIQSKDPKND-NVAKVSHILITPTISEASKQKVIKKVQNLK 502 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452 + + + ++ + + + K VK + I ++L+ ++F L Sbjct: 503 AEIESKKVTWDNAEKQDKYNFSVK--ERFKKLVKTDAIPGIGKNDELMNQIFA----LKI 556 Query: 453 DHTVALPDG-SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 D + D Y + IP E V+ + +++ S Sbjct: 557 DGILERNDATGYYLIAKTSEIPFAQATFENSKERVRLELAHEYADKQLDS 606 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 63/446 (14%), Positives = 137/446 (30%), Gaps = 51/446 (11%) Query: 5 IRKASRTW--VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFIN 58 R + + I + + + LI G+ ++ +++ + +V K+ F Sbjct: 3 FRSHKKGIQLASAIMMGIFGIGMLISGILFLKNNVFGALNHREVIATVNGIKIYRDDFER 62 Query: 59 S---WKQELGMISQKIGFVVNSERARSVGLD--------KKILDNLVSGATLDQFIEDIG 107 K EL I+Q+ + S + + +L +++ L +++G Sbjct: 63 ESYSLKNELNEITQQKIQQLAQVGTNSGNIKSVPDDLVNEYVLQLIINKEILLSSAKNLG 122 Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167 ++ V E K +K F L G N + + Sbjct: 123 IKVSGSDVNKEFENY----RKQSKLGKKEFGEYLRSVGYNVSSFKQTIKDQKIIEKMREK 178 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 + + + K + + + + V + +A Sbjct: 179 IFSNDKITEEEIK--KAYERNKYTQSFANQDFDDVKDQIKETMTQDKNIMILNSYLAKAK 236 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-NQKEADEA 286 E +I + + K++ + EY+ E I +V Q + K +E Sbjct: 237 EKTKIVFKDKNFENMYTKVKAVVAQ-NGEYKYTNEAVNEQIINSVSQTQQGYSDKLVNEL 295 Query: 287 FQSLKKGKK-FIQLAEEQGKSLSDISLGSFSKEYI----------------PDVSLADSI 329 +LKK F++++E+ + + + PD + + Sbjct: 296 KTTLKKNLDKFVKISEKAKAAGIKADPDLIGVDQLRDYSQKYYNYLIDSYKPDDATLQAR 355 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F+ + D + GYVI + F+ KK A+++ T + K Sbjct: 356 FNAKR--DSYNTQNSIGGYVI---GEEYQAGESDFEGAKKQ-ADEIMKTTTKDNFAAKAK 409 Query: 390 RLE---EFLALGTSMDEISRREKIVS 412 E G S+ E + ++V Sbjct: 410 EFSKDPESAKNGGSLGETADLSQLVP 435 >gi|262189698|ref|ZP_06048066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT 5369-93] gi|262034418|gb|EEY52790.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT 5369-93] Length = 365 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 114/335 (34%), Gaps = 85/335 (25%) Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 L +++L+ L+ Q + IG++ D R+ I K+N+ + + ++ +A+ Sbjct: 1 MLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQ 56 Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203 EG+ E+ R V + L+ + E ++ ++ Sbjct: 57 EGLTYPEF---------REQVRKEMAASDARNALVRRRINILPAEVDTLAELL------- 100 Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263 A ++A + +IS+I V + + K Sbjct: 101 --AQETDATVQ---------------YKISHIQLRVDDGQDKS----------------- 126 Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYI 320 + A++ L+ G F Q+A K +L G KE + Sbjct: 127 --------------AAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEM 172 Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV-------KKDIAN 373 P AD I + KG G+ I + ++K TV+ EV K I Sbjct: 173 P-TIFADQI-KMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTII- 229 Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 + A +++ E +R++ + E++++ Sbjct: 230 -LSDEGAQKQLNEFVQRIKN---GEVTFAELAQQY 260 >gi|307298526|ref|ZP_07578329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915691|gb|EFN46075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales bacterium mesG1.Ag.4.2] Length = 733 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 28/241 (11%) Query: 141 LAREGINEKEYID--------HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN-RS 191 L +G N Y + L ++ + + N +L A++ E R Sbjct: 95 LRSQGYNLDPYFETENYPSEMGIRYDLFKSLIDQKTLLFYATENGVLPTAEQVDAETNRI 154 Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251 VD V + AI + D + + + + +K I + Sbjct: 155 VDEYVADEETKSAII---------YQYGSVDAFSELVRDYVVTQMLATNVTQKAIPDMEE 205 Query: 252 ELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG----K 305 + +N E E ++ ++ A E + G+ F A + Sbjct: 206 RFENYVNENMEDLKINYEKVDANHILVSDEASAVEIKSMIDSGEISFTDAATQFSIDTDT 265 Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365 +++ +LG F + + D+ F A G + FGY + V++ +F+ Sbjct: 266 AINGGALGEFGRGQMV-QEFEDASFD-ATPGLVIGPVESQFGYHLIRVNSKT--TFDTFE 321 Query: 366 E 366 E Sbjct: 322 E 322 >gi|302333506|gb|ADL23699.1| peptidylprolyl isomerase, PrsA [Staphylococcus aureus subsp. aureus JKD6159] Length = 320 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149 Query: 278 P-----------NQKEADEAFQSL-----KKGKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + + K KF ++A+++ G + D LG K Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKNPSKFGEIAKKESMDTGSAKKDGELGYVLK 209 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 263 QKVQKNPKLLTDAYKDLL 280 >gi|303236822|ref|ZP_07323401.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN] gi|302482990|gb|EFL46006.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN] Length = 477 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 45/380 (11%), Positives = 106/380 (27%), Gaps = 54/380 (14%) Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS----VD 193 + L + E E + ++ + + + + Sbjct: 102 QAALDSINVTEAEITQGVEQQINAWIAIPQIGSKEKLEEYQHKSIAQIRQDLHDDFKNRQ 161 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--RAPEYKRISYILFDVHEKEKKIEISND 251 + + S A + ++F+K + P + I + +IE + Sbjct: 162 LVQRMQEKLVGDVKVSPAEVREYFKKLPVDSIPMIPTTVEVQLITQTPRIEPTEIERIKN 221 Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLA----EEQGKS 306 +L+ + KG+ F LA E+ G + Sbjct: 222 QLRDY------------------------------TDRVVKGETSFETLARLYSEDPGSA 251 Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366 LG + + D + A + F+L + V+ FGY I + + + Sbjct: 252 RQGGELGFMGRGML-DPTFAAAAFNLTDPKKVSKVVESEFGYHIIQLIDRRGDKL----N 306 Query: 367 VKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEIS---RREKIVSIDLPLVDFAG 422 + + A + + A + DE + +K + L+ Sbjct: 307 CRHILLKPKVSADALNAATNRLDSIANDIKAGKFTFDEATMIISDDKETKNNHGLMTNVQ 366 Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482 + A ++ +V ++ DG V + + +R +E Sbjct: 367 GQARTSRFAMRELPSEIARKVENM-KVGEVSEPFSMIDGRGKLVVVIVKLKSRI---DEH 422 Query: 483 LTDVKKDWKTVKTAEEVSSK 502 + +D + +K + + Sbjct: 423 RATITEDLQAMKDIVALKKR 442 >gi|117619758|ref|YP_856089.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561165|gb|ABK38113.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 92 Score = 71.6 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADS 328 + ++ +KE E + + KG F Q+A+ S LG FSK + + D+ Sbjct: 6 AQHILVKTEKECLEIKEKIAKGADFGQMAKRFSTCASSKRFGDLGEFSKGDMVK-AFDDA 64 Query: 329 IFSLAKKGD---FTPVIHGSFGYVIAHV 353 +F KG+ + FG+ + V Sbjct: 65 VF----KGELLTVLGPVRTKFGFHLIKV 88 >gi|49484083|ref|YP_041307.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425953|ref|ZP_05602377.1| foldase prsA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428618|ref|ZP_05605016.1| foldase prsA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431255|ref|ZP_05607632.1| foldase prsA [Staphylococcus aureus subsp. aureus 68-397] gi|257433935|ref|ZP_05610293.1| foldase prsA [Staphylococcus aureus subsp. aureus E1410] gi|257436851|ref|ZP_05612895.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus M876] gi|282904416|ref|ZP_06312304.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus C160] gi|282906239|ref|ZP_06314094.1| foldase prsA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909157|ref|ZP_06316975.1| foldase prsA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911464|ref|ZP_06319266.1| foldase prsA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914636|ref|ZP_06322422.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M899] gi|282919602|ref|ZP_06327337.1| foldase prsA [Staphylococcus aureus subsp. aureus C427] gi|282924982|ref|ZP_06332648.1| foldase prsA [Staphylococcus aureus subsp. aureus C101] gi|283958594|ref|ZP_06376045.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus A017934/97] gi|293503708|ref|ZP_06667555.1| foldase prsA [Staphylococcus aureus subsp. aureus 58-424] gi|293510729|ref|ZP_06669434.1| foldase prsA [Staphylococcus aureus subsp. aureus M809] gi|293537271|ref|ZP_06671951.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M1015] gi|295428419|ref|ZP_06821048.1| foldase prsA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590614|ref|ZP_06949252.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus MN8] gi|56749225|sp|Q6GFL5|PRSA_STAAR RecName: Full=Foldase protein prsA; Flags: Precursor gi|49242212|emb|CAG40919.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271647|gb|EEV03793.1| foldase prsA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275459|gb|EEV06946.1| foldase prsA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278203|gb|EEV08851.1| foldase prsA [Staphylococcus aureus subsp. aureus 68-397] gi|257282028|gb|EEV12165.1| foldase prsA [Staphylococcus aureus subsp. aureus E1410] gi|257284202|gb|EEV14325.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus M876] gi|282313348|gb|EFB43744.1| foldase prsA [Staphylococcus aureus subsp. aureus C101] gi|282317412|gb|EFB47786.1| foldase prsA [Staphylococcus aureus subsp. aureus C427] gi|282321817|gb|EFB52142.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M899] gi|282325159|gb|EFB55469.1| foldase prsA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327421|gb|EFB57716.1| foldase prsA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331531|gb|EFB61045.1| foldase prsA [Staphylococcus aureus subsp. aureus Btn1260] gi|282596034|gb|EFC00998.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus C160] gi|283790743|gb|EFC29560.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus A017934/97] gi|290920116|gb|EFD97184.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M1015] gi|291095374|gb|EFE25639.1| foldase prsA [Staphylococcus aureus subsp. aureus 58-424] gi|291466620|gb|EFF09141.1| foldase prsA [Staphylococcus aureus subsp. aureus M809] gi|295127819|gb|EFG57456.1| foldase prsA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575500|gb|EFH94216.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus MN8] gi|312437694|gb|ADQ76765.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus TCH60] gi|315195752|gb|EFU26139.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus CGS00] Length = 320 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149 Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + ++K KF ++A+++ G + D LG K Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 263 QKVQKNPKLLTDAYKDLL 280 >gi|39997591|ref|NP_953542.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA] gi|39984483|gb|AAR35869.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA] Length = 571 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 7/172 (4%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + + F ++++ DEL+A YE +K +Y P + ++ + F +Q A A + Sbjct: 392 QESVIFGHFVEKVIRPDVKVTEDELKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAE 451 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-----DVSLADSIFSLAKKGDFTPVIH 343 L++G F E + + G E +P + + + A+ G++ V Sbjct: 452 KLRQGMDFKWFKENAEGHVDAKAAGVLQFEDVPVTLKTLPEGLNKVITGAQTGEY-RVYS 510 Query: 344 GSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + V N+ P SF EV+ I ++ + ++ V E +L + Sbjct: 511 DPNGFTYVILVRNVIPEQVQSFPEVEATIRKNVQSEQLNKLVVEWADKLRKA 562 Score = 43.8 bits (102), Expect = 0.097, Method: Composition-based stats. Identities = 72/523 (13%), Positives = 156/523 (29%), Gaps = 82/523 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V +V + + + S + +++ G IL+ +++ + Q Sbjct: 60 VATVNDEPITVNDLNASLETVHEGMTE--GKQAPRRNFTD------ILNRIITSKLIIQE 111 Query: 103 IEDIGLEADH------GRVWGEIARSPLFHG------KDNKFSHDVFVSR-----LAREG 145 +IGL+ ++ R + D K + + Sbjct: 112 GRNIGLDQQEQPKEMIDTFSRKLLRELVLKDHVKDIRPDPKEVEKRYGQLNVEWTFSTLT 171 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 +E K L + V ++ Q ++ +E+ D + + + P Sbjct: 172 FKNEEDAKKARKALDKGTSFDALVAEEVKEKRAEAKQNEKLKYEHIHPDIVKIIDSLKPG 231 Query: 205 IADP-------------------SNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEK 242 P + L EK ++A E R I + Sbjct: 232 AVGPVIDMQKGAMLFRLDAVKHSDDPKLKDRAEKETLTAARFKALEKFRTELIEKYFKQD 291 Query: 243 EKKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLV----FPNQKEADEAFQSLKKGKKF 296 +K I+ + +EK+K + + R + + A+ G Sbjct: 292 KKLIKSLD------FEKDKAGFLKFLEDKRPLATIKGEKPVTVADLAEAIRMKFYHGVDM 345 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGS-FGYVIAHV 353 + +++ D L + D F K+ T FG+ + V Sbjct: 346 A-IDQKKVNKAKDSLLFEILATRAIEKEGRDKGFDKKKEYLDKVTDYQESVIFGHFVEKV 404 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VS 412 I+P V+ E+K + + + +A S EK+ Sbjct: 405 --IRPDVKVTEDELKAYYEAH------KSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQG 456 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPDGSY 463 +D + + A + E + + + L+K T A P+G Sbjct: 457 MDFKWFKENAEGHVDAKAAGVLQFEDVPVTLKTLPEGLNKVITGAQTGEYRVYSDPNGFT 516 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + ++ IP + + EV ++K+ ++ + + V A++L Sbjct: 517 YVILVRNVIPEQVQSFPEVEATIRKNVQSEQLNKLVVEWADKL 559 >gi|307730260|ref|YP_003907484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] gi|307584795|gb|ADN58193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1003] Length = 304 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 16/186 (8%) Query: 214 TQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 Q +E A E + + + ++ K +++ +++A+Y+ E + Sbjct: 107 KQHYESRPQVVAAVEQAKSAAMTAAYLRDQVKPAPVTDADVKAKYDAIVATLGEFEYKPS 166 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV------ 323 + + A LKKG F QLA++ + +L S Sbjct: 167 A-IAVKDADTAQTVLTQLKKGTDFAQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNW 225 Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RIT 378 LA+++ L + G + + + I V +P+ + ++K + Q+ + Sbjct: 226 PQPLAEALVKLPQGGVSSAPVQVGDAFWILRVDEKRPTQVPQYDQIKDTLRKQLEQVALQ 285 Query: 379 KASEKV 384 KA+ +V Sbjct: 286 KATAQV 291 >gi|326315452|ref|YP_004233124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372288|gb|ADX44557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 26/218 (11%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 + D+ E + + + + YE + +Y E + +++ Sbjct: 96 DAPADDGTTSEAATQAIEALLEQAIAVP-DPLEESCRRHYEAHAARYRDGERVHLRHILY 154 Query: 278 PN---------QKEADEAFQSLK----KGKKFIQLAEEQG---KSLSDISLGSFSKEYIP 321 ++ A+ L+ G+ F + A E LG ++ Sbjct: 155 AVTPGVDVQRLRERAEATLLQLRCADDGGEAFARAARESSNCPTGAEGGDLGWLARGDCA 214 Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381 A +F + G ++H FG + V + EV++ +A +R Sbjct: 215 -PEFAREVFGAQEVGVLPRLVHSRFGLHVVEVVARDAGRQRGYGEVREAVALALRQQ--- 270 Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419 ++ + LA ++ + + D PLV Sbjct: 271 -AWVNALRQYLQVLAGEAALQGV----DLEGADTPLVQ 303 >gi|313682198|ref|YP_004059936.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] gi|313155058|gb|ADR33736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum kujiense DSM 16994] Length = 92 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 T ++ + E +E + +++G F ++A + + S LG FS + Sbjct: 5 TARHILVSTEAECNELKKQIEEGASFAEIAADNSQCPSGRKGGDLGRFSPGQMVK-EFDT 63 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 ++F+ G I FGY + V+ Sbjct: 64 AVFN-GDVGVLYGPIKTQFGYHLLEVTAR 91 >gi|229552580|ref|ZP_04441305.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1] gi|258508775|ref|YP_003171526.1| peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus GG] gi|258539953|ref|YP_003174452.1| peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus Lc 705] gi|229314132|gb|EEN80105.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1] gi|257148702|emb|CAR87675.1| Peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus GG] gi|257151629|emb|CAR90601.1| Peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus Lc 705] gi|259650081|dbj|BAI42243.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG] Length = 300 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V G + D K+ ++ IVL S+ + F K K Sbjct: 25 VANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKALEQQYPNKVSDKKVNSQFNKLKKQ 84 Query: 224 Y-----RAPEY---------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 Y E +I L+ + + + +++++++K + K Sbjct: 85 YGSSFDSTLEQNGYTESSFKDQIRTTLYSEVALKDMKKPTTKQIESQWKKYQPKI----- 139 Query: 270 RTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIP 321 V+ ++ + EA + +K K F LA++ + G + + Sbjct: 140 -QVQHILVKTEDEAKQIISDYQKDPTEKNFESLAKKNSIDTGTKNKGGKLAAFDNTDTSL 198 Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 D + + F L K GD T + +GY + V +I + + +E KKD+ Q+ Sbjct: 199 DSTFKSAAFKLKKAGDITTTPVKTQYGYHVIRVISI--AKKGTMKEHKKDLEKQI 251 >gi|189426077|ref|YP_001953254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] gi|189422336|gb|ACD96734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi SZ] Length = 242 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 11/127 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 T ++ + + ++ G F +A+ + S LG+F + Sbjct: 4 TARHILVDTEARCLQLKADIEAGADFADVAQRESSCPSRQKGGDLGTFGPGQMV-PEFDQ 62 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNI------KPSFTVSFQEVKKDIANQMRITKAS 381 +FS + + FGY + V+N + + + M A Sbjct: 63 VVFS-GELNKVLGPVKTQFGYHLIEVTNRWEQPATQAGGESDLDQALVALRQDMSDATAQ 121 Query: 382 EKVKEDY 388 K + + Sbjct: 122 SKFYDAF 128 >gi|148547507|ref|YP_001267609.1| SurA domain-containing protein [Pseudomonas putida F1] gi|148511565|gb|ABQ78425.1| SurA N-terminal domain [Pseudomonas putida F1] Length = 213 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 7/147 (4%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V ++ + + L + + + N + L + LD L+ L Q Sbjct: 22 AARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQE 79 Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162 + G+ V +I G S +F RLA G + +Y ++ ++ Sbjct: 80 AQRQGIAVSDEHVSAQIGEIEAAFG-----SPALFERRLAEAGFDRAQYTEYTRHEMAAQ 134 Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFEN 189 V + PS ++ + Sbjct: 135 QVYALLSAVDAPSQGEVEAFYDANQQR 161 >gi|121608769|ref|YP_996576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] gi|121553409|gb|ABM57558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter eiseniae EF01-2] Length = 261 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 4/145 (2%) Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 + I + K +++ E QAEY+K E + ++ + +A + Sbjct: 95 REAILINALFADFRKANPVTDAETQAEYDKFVAANNGKEYK-ASHILVDKEADAKAIIAA 153 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV---SLADSIFSLAKKGDFTPVIHGSF 346 +KKG KF +A++Q K + G P +++ L + + F Sbjct: 154 IKKGAKFEDIAKKQSKDPGSGAKGGDLGWASPASYVSEFTEALIKLDQGKMTDAPVKSQF 213 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDI 371 G+ + + +++P ++VK + Sbjct: 214 GWHVIRLDDMRPIQLPKLEDVKPQV 238 >gi|325851850|ref|ZP_08171015.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A] gi|327312553|ref|YP_004327990.1| PPIC-type PPIASE domain-containing protein [Prevotella denticola F0289] gi|325484692|gb|EGC87605.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A] gi|326946030|gb|AEA21915.1| PPIC-type PPIASE domain protein [Prevotella denticola F0289] Length = 480 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 100/294 (34%), Gaps = 29/294 (9%) Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287 + +++S E++ + K P VE L + E +E Sbjct: 171 EKLVSDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINRIKNQLRDYT 230 Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + KG+ F LA E+ G + LG + + D + A + F+L + V+ Sbjct: 231 DRITKGETSFATLARLYSEDPGSARQGGELGYMGRGML-DPAFAAAAFNLTDPKKVSKVV 289 Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSM 401 FGY I + + + + + + + KE + ++ + Sbjct: 290 ESEFGYHIIQLIDRRGDKV----NCRHILLKPNVSMASIDAAKERLDSIGKDIRNGKFTF 345 Query: 402 DEIS---RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG-KDDPLSKDHTVA 457 ++ + +K + L+ + ++ + ++ V K D +S+ + Sbjct: 346 EDATAYLSDDKDTKNNHGLMVNSSENARTSRFKMKDLPTEVARVVDTMKVDEVSQPFQMV 405 Query: 458 LPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 P G + V++KE P + E ++ + + + + V E Sbjct: 406 NPRGKVVCAIVKLKERTPEHRATITEDFQAMRDIVTAQRRKDILHDWVVKKVKE 459 >gi|120609364|ref|YP_969042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] gi|120587828|gb|ABM31268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli AAC00-1] Length = 303 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 19/195 (9%) Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN----- 279 E + + S D + YE + +Y E + +++ Sbjct: 103 TTSEAATQAIEALLEQALAVP-DPSEDACRRHYEAHTARYRDGERVHLRHVLYAVTPGVD 161 Query: 280 ----QKEADEAFQSLK----KGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADS 328 ++ A+ L+ G+ F + A + LG ++ A Sbjct: 162 VQRLRERAEAELLQLRCAHDGGEAFARAARQWSNCPTGAEGGDLGWLARGDCA-PEFARE 220 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388 +F + G ++H FG + V + EV++ +A +R +++ Sbjct: 221 VFGAQEVGVLPRLVHSRFGLHVVEVVARDAGRQRGYGEVREAVALALRQQSWVNALRQYL 280 Query: 389 KRLE-EFLALGTSMD 402 + L E G +D Sbjct: 281 QVLAGEAALQGVDLD 295 >gi|146339260|ref|YP_001204308.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] gi|146192066|emb|CAL76071.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278] Length = 341 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 22/211 (10%) Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD---NYRAPEYKRISYILFDVHEKEKKI 246 R + R + A L + +++ ++ + Sbjct: 96 RDPALLSQTVRAILANRLVLKEALAKKWDQQPAVVAQLARARESILTEGYLQSVTQPPDS 155 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA------------DEAFQSLKK-G 293 S +++A YE N + P + Q++ +A ++ + LK+ G Sbjct: 156 YPSEADIKAAYEVNMSAFLVPRRFRIAQILVALANDADKAAEDAAKKKLEDVVRKLKQPG 215 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 F LA E + D +G + + + + LAK G T I G+ Sbjct: 216 TDFAALARASSDETATAEKDGEIGWVPEPNLRG-EIRSQVAGLAKGG-VTDPIRLDDGWH 273 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 + + + S T EVK + ++R +A Sbjct: 274 VVKLLDTDASTTRPLAEVKDVLIQRLRAERA 304 Score = 38.0 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 8/116 (6%) Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKE-------VAAIPYKEQLLFRVFGKDDPLSKD 453 ++++ R+ K D + A D P + Sbjct: 204 LEDVVRKLKQPGTDFAALARASSDETATAEKDGEIGWVPEPNLRGEIRSQVAGLAKGGVT 263 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 + L DG + V++ ++ + R L EV + + + + + +LV + Sbjct: 264 DPIRLDDG-WHVVKLLDTDASTTRPLAEVKDVLIQRLRAERADANRRAYVAELVKQ 318 >gi|241764579|ref|ZP_04762596.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] gi|241365982|gb|EER60603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax delafieldii 2AN] Length = 309 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 21/183 (11%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------------G 293 E S + + +E + + E + ++F D L+ G Sbjct: 130 EPSEEACRRYHEAHPAAHAQGERAQLRHVLFAVTPGVDVKQLRLRAEAMLLDLRCADDGG 189 Query: 294 KKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350 +F + A + S LG S+ A +F A+ G + ++H FG + Sbjct: 190 VRFAEAAAQWSNCPSGQQGGDLGWLSRADCA-PEFAREVFGSAEIGVLSRLVHSRFGLHV 248 Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V + SF+EV+K I +R ++ + LA ++ + Sbjct: 249 VEVVAREAGLQPSFEEVRKAIGLTLRQQ----AWVNALRQYLQLLAGAAVVEGVVLDAAD 304 Query: 411 VSI 413 + Sbjct: 305 SPL 307 >gi|119945335|ref|YP_943015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] gi|119863939|gb|ABM03416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] Length = 92 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++++ADE LKKG KF LA++ S LG F K + + F Sbjct: 9 HILVKHKEKADEILLQLKKGAKFQILAKKYSTCPSGKKGGDLGEFKKGQMV-PAFDKVAF 67 Query: 331 SLAKKGDFTPVI--HGSFGYVIAHV 353 G+ FG+ + V Sbjct: 68 ----TGEILTPHLVKTKFGWHVIKV 88 >gi|124004173|ref|ZP_01689019.1| putative exported isomerase [Microscilla marina ATCC 23134] gi|123990243|gb|EAY29742.1| putative exported isomerase [Microscilla marina ATCC 23134] Length = 777 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 45/406 (11%), Positives = 122/406 (30%), Gaps = 71/406 (17%) Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101 + ++G + S F ++++ L N + A + LD + Sbjct: 37 VIATLGANPIYLSDFKYTYEKSLK----------NKDSAYTRSSVSSYLDLYIKFKLKIL 86 Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--FVSRLAREGINEK--------EY 151 + G++ F++++ + +LA+ + +K E Sbjct: 87 AAQKKGIDTTDA------------------FNNELSTYKEQLAKPYLTDKAKVEELVREA 128 Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 D + + + ++ P + ++ K ++ PS Sbjct: 129 YDRLKEEVRVSHILVKVDKEAEPQDTVVAYNKILELRKTVLNGKSFEQVASTHSQSPSAK 188 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN---DELQAEYEKNKEKYFSPE 268 + A ++ Y + + + IS+ + + K ++ + Sbjct: 189 Q-----GGNIGYFTA---LQMVYPFENASYQTQVGSISDLLRTKFGYHFLKVTDRRKASG 240 Query: 269 IRTVEQLVFPNQKEA------------DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316 ++ +A D+ ++ LK G+ + +L + + + G Sbjct: 241 KIQTAHIMIMQPAKANAKDSIEAKRKIDKIYERLKAGEDWDKLCRQFSEDQPSKNKGGVL 300 Query: 317 KEYIPD---VSLADSIFSLAKKGDFTPVIHGSF-GYVIAHVSNIKPSFTVSFQEVKKDIA 372 E+ + F L + GDF+ ++ + G+ I + + +F EV+ I Sbjct: 301 PEFGVGEAIPEFEQASFQLKEVGDFSKPVYTPYSGWHIIKLMKKR--TLDTFTEVEPFIR 358 Query: 373 NQMRITK----ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414 ++ K++ F ++ + + Sbjct: 359 QKVAKDSRLKVTHRSFIAKLKKINNFRLNPKVANKAIAKAGTTLLK 404 >gi|298506530|gb|ADI85253.1| conserved hypothetical protein [Geobacter sulfurreducens KN400] Length = 572 Score = 71.2 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 7/172 (4%) Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288 + + + F ++++ D+L+A YE +K +Y P + ++ + F +Q A A + Sbjct: 393 QESVIFGHFVEKVIRPDVKVTEDDLKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAE 452 Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-----DVSLADSIFSLAKKGDFTPVIH 343 L++G F E + + G E +P + + + A+ G++ V Sbjct: 453 KLRQGMDFKWFKENAEGHVDAKAAGVIQFEDVPVTLKTLPEGLNKVITGAQTGEY-RVYS 511 Query: 344 GSFGY-VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394 G+ + V N+ P F EV+ I ++ + ++ V E +L + Sbjct: 512 DPNGFTYVILVRNVIPEQVQPFPEVEAAIRKNVQSEQLNKLVVEWADKLRKA 563 Score = 44.2 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 70/523 (13%), Positives = 153/523 (29%), Gaps = 82/523 (15%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102 V +V + + + S + + G IL+ +++ + Q Sbjct: 61 VATVNDEPITVNDLNASLETVHEGM--MEGKQAPRRNFTD------ILNRIITSKLIIQE 112 Query: 103 IEDIGLEADH------GRVWGEIARSPLFHG------KDNKFSHDVFVSR-----LAREG 145 +IGL+ ++ R + D K + + Sbjct: 113 GRNIGLDQQEQPKEMIDTFSRKLLRELVLKDHVKDIRPDPKEVEKRYGQLNVEWTFSTLT 172 Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204 +E K L + V ++ Q ++ +E+ D + + + P Sbjct: 173 FKNEEDAKKARKALDKGTSFDALVAEEVKEKRAEAKQNEKLKYEHIHPDIVKIIDSLKPG 232 Query: 205 IADP-------------------SNAVLTQWFEK---YKDNYRAPEYKRISYILFDVHEK 242 P + L EK ++A E R I + Sbjct: 233 SVGPVIDMQKGAMLFRLDAVKHSDDPKLKDRAEKETLTAARFKALEKFRTELIEKYFKQD 292 Query: 243 EKKIEISNDELQAEYEKNKEKYFS--PEIRTVEQLV----FPNQKEADEAFQSLKKGKKF 296 +K I+ + +EK+K + + R + + A+ G Sbjct: 293 KKLIKSLD------FEKDKAGFLKFLEDKRPLATIKGEKPVTVADLAEAIRMKFYHGVDM 346 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGS-FGYVIAHV 353 + +++ D L + D F K+ FG+ + V Sbjct: 347 A-IDQKKVNKAKDSLLFEILATRAIEKEGRDKGFDKKKEYLDKVADYQESVIFGHFVEKV 405 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI-VS 412 I+P V+ ++K + + + +A S EK+ Sbjct: 406 --IRPDVKVTEDDLKAYYEAH------KSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQG 457 Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA---------LPDGSY 463 +D + + A + E + + + L+K T A P+G Sbjct: 458 MDFKWFKENAEGHVDAKAAGVIQFEDVPVTLKTLPEGLNKVITGAQTGEYRVYSDPNGFT 517 Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + ++ IP + + EV ++K+ ++ + + V A++L Sbjct: 518 YVILVRNVIPEQVQPFPEVEAAIRKNVQSEQLNKLVVEWADKL 560 >gi|321479467|gb|EFX90423.1| hypothetical protein DAPPUDRAFT_299806 [Daphnia pulex] Length = 130 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G KF ++A + S LG + + ++ Sbjct: 38 KVRHILCEKQSKILEALEKLKAGMKFNEVAATYSEDKARSGGDLGWMVRGSMVGP-FQEA 96 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L P + FGY I V K Sbjct: 97 AFALPISSLGNPVYTDPPVKTKFGYHIIMVEGKK 130 >gi|82751495|ref|YP_417236.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus RF122] gi|258423118|ref|ZP_05686012.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus A9635] gi|283770925|ref|ZP_06343817.1| foldase prsA [Staphylococcus aureus subsp. aureus H19] gi|123548081|sp|Q2YTZ6|PRSA_STAAB RecName: Full=Foldase protein prsA; Flags: Precursor gi|82657026|emb|CAI81463.1| probable peptidyl-prolyl cis-isomerase [Staphylococcus aureus RF122] gi|257846682|gb|EEV70702.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus A9635] gi|283461072|gb|EFC08162.1| foldase prsA [Staphylococcus aureus subsp. aureus H19] gi|283471112|emb|CAQ50323.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus ST398] gi|298695109|gb|ADI98331.1| probable peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus ED133] Length = 320 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149 Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + ++K KF ++A+++ G + D LG K Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 263 QKVQKNPKLLTDAYKDLL 280 >gi|329314517|gb|AEB88930.1| Foldase protein prsA [Staphylococcus aureus subsp. aureus T0131] Length = 320 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149 Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + ++K KF ++A+++ G + D LG K Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 263 QKVQKNPKLLTDAYKDLL 280 >gi|323438380|gb|EGA96144.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus O11] gi|323441708|gb|EGA99353.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus O46] Length = 213 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 3 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 42 Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + ++K KF ++A+++ G + D LG K Sbjct: 43 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 102 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 103 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 155 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 156 QKVQKNPKLLTDAYKDLL 173 >gi|253690377|ref|YP_003019567.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756955|gb|ACT15031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 93 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +++A++ L+KG F +LA++ S LG F K + + ++F Sbjct: 9 HILVDTEQQANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY + V Sbjct: 68 SCELLKP---FGPVKTQFGYHVIKV 89 >gi|149375261|ref|ZP_01893032.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter algicola DG893] gi|149360297|gb|EDM48750.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter algicola DG893] Length = 92 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 T ++ ++ + +E +++ G+ F ++A++ S LG+F + Sbjct: 3 QATARHILVDSEAKCEELKLAIEGGQDFAEVAKQHSSCPSGRNGGDLGAFGPGQMV-PEF 61 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +FS + + FGY + V++ Sbjct: 62 DKVVFS-GEVNKVLGPVKTQFGYHLLEVTSR 91 >gi|300770932|ref|ZP_07080809.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33861] gi|300762205|gb|EFK59024.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum ATCC 33861] Length = 458 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 55/392 (14%), Positives = 130/392 (33%), Gaps = 44/392 (11%) Query: 136 VFVSRLAREGINEKEYIDHY---TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + LA+ G++ E Y + + + + S +D Sbjct: 46 QYSQNLAQ-GMSPNEDFKCYILQQLLTQKLLAQQAVLDSIEVSESEVDDNLNNRL----- 99 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK----KIEI 248 +V L + + Y+ E + + ++ KI++ Sbjct: 100 --------NVMTRQAGGKERLESFLNRSLLQYK-EEMRTSVAEQLKAQKMQQNIVQKIDV 150 Query: 249 SNDELQAEYE---KNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKGKKF 296 + E++ +E K+ YF E+ E +++P ++K A++ + + G F Sbjct: 151 TPLEVKRYFEGLNKDSLPYFDTEVEIGEIVMYPVLTKEEKEASRKRAEDLRKQIVDGSDF 210 Query: 297 IQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352 +A E++G +++ LG +++ + F L K G+ + V +G+ Sbjct: 211 GTIARLYSEDKGSAVAGGDLGFSTRDNYVK-EFSAVAFKL-KPGEISQVFETEYGFHFLQ 268 Query: 353 VSNIKPSFTVS---FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409 V + + +K A+ R + + + + + ++ K Sbjct: 269 VLERRGEEVRARHILVSIKPTNASLERTKVKMDSLYQKLINKKIDFYTAATQYSDNKETK 328 Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 + + + K A++ L L ++ A G + +K Sbjct: 329 FNGGMVTDQNRSTLIPVNKLEASVFTAIDPLKAGEYSQPTLFQEEGPAGKSGYRISF-LK 387 Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501 IP L++ + +K+ KT ++S Sbjct: 388 TRIPPHKANLDQDFSKIKEAASEDKTRRKLSE 419 >gi|167841272|ref|ZP_02467956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia thailandensis MSMB43] Length = 296 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 15/157 (9%) Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFI 297 S+ E+QA Y++N + +P V Q+ A+ A S + F Sbjct: 122 SDAEIQAAYDRNLPAFMAPRALHVAQIYIAVPPNAEAATLDKARRQAADLASRARNGDFA 181 Query: 298 QLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 LA+ + + + G F E + + + +L K G + I G+ + + Sbjct: 182 ALAKANSQDHASAANGGDLGFVPEPLMLPEVRQAAGAL-KPGQVSAPIRTPAGFHVVKLI 240 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 + + + +VK+ + +R + + + +L Sbjct: 241 DARAAAPRPLADVKEQVRAMLRAQRTQQNAQAYLAKL 277 >gi|254782280|sp|B5KFL3|PIN4_TAEGU RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; AltName: Full=Parvulin-14; Short=Par14; AltName: Full=Peptidyl-prolyl cis-trans isomerase Pin4; Short=PPIase Pin4; AltName: Full=Rotamase Pin4 gi|197129863|gb|ACH46361.1| putative peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 variant 1 [Taeniopygia guttata] Length = 128 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ A EA + LK G++F ++A + + + LG ++ + ++ Sbjct: 36 KVRHILCEKHGRAMEAMEKLKSGQRFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 94 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L K P + FGY I V K Sbjct: 95 AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128 >gi|332285620|ref|YP_004417531.1| peptidyl-prolyl cis-trans isomerase C [Pusillimonas sp. T7-7] gi|330429573|gb|AEC20907.1| peptidyl-prolyl cis-trans isomerase C [Pusillimonas sp. T7-7] Length = 93 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325 + ++ + + +E +++ G F ++A E S +LG+F + Sbjct: 3 QASARHILVSTEDKCNELKTAIEGGADFAEVARENSSCPSSRDGGNLGTFGPGQMVK-EF 61 Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + +FS A + FGY + V++ + Sbjct: 62 DEVVFS-APVNVVQGPVKTQFGYHLVEVTSRQ 92 >gi|329894605|ref|ZP_08270411.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [gamma proteobacterium IMCC3088] gi|328922959|gb|EGG30287.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) [gamma proteobacterium IMCC3088] Length = 421 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 53/416 (12%), Positives = 120/416 (28%), Gaps = 85/416 (20%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + S I+ + G E A L ++ LD L+ + Sbjct: 28 DKVIAVVDDDVIMESELQERLIVVKNNITSR-GLEAPPEDA----LVRETLDRLILESIQ 82 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM- 158 Q G+ + ++ + R ++ G+ ++++D + Sbjct: 83 LQKGVRYGIRIEDQQLAAAVGRLA------------------SQNGLTPQQFVDQLEQSG 124 Query: 159 ---------LSRTDVVGMFVGGMRPS--NLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207 + R ++ GG ++ + + F I R + A D Sbjct: 125 GSYGELLANIEREMIIQRVQGGNVNQRIDITTAEIEAFLDTEEGQQLIQPAYRLIHARLD 184 Query: 208 PSNA----VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI---SNDELQAEY--- 257 S+ + E + A E + K ++ +L + + Sbjct: 185 VSDDIDLDAARTYVESLAERINAGEEFNEVIGASTDPYQFKGGDLGIRPESDLPSLFAPI 244 Query: 258 --EKNKEKYFSP-------------EIR---------TVEQLVFP-----NQKEADEAFQ 288 + + P E R +V ++ ++A E Sbjct: 245 APTMEQGSFAGPIENGRSFHFIYLLEKRGGTQIIPQTSVRHILIKPSEILTNEQAQELAA 304 Query: 289 SLKK----GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 L++ G+ F LA E + + LG S + + + S A+ T Sbjct: 305 ELRQRALDGEDFADLAREYSEDIGSAQEGGDLGWASPGQMV--PVFEEQMSNAELNAITE 362 Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 FG+ I V + + + + + K E+++ +++ + Sbjct: 363 PFQSQFGWHILQVMDRRDQDVTQIVN-RNRAQDYLHNQKYQEELEAWLQQIRDEAF 417 >gi|91087021|ref|XP_974228.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase [Tribolium castaneum] gi|270010516|gb|EFA06964.1| hypothetical protein TcasGA2_TC009923 [Tribolium castaneum] Length = 128 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ Q + EA + LK G+KF ++A + + LG ++ + D+ Sbjct: 36 KVRHILCEKQGKCLEALEKLKAGQKFPEVAAAYSEDKARQGGDLGWMTRGSMVGP-FQDA 94 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L P + FGY I V K Sbjct: 95 AFALPVSNVNNPVYTDPPVKTKFGYHIIMVEGKK 128 >gi|50123136|ref|YP_052303.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium atrosepticum SCRI1043] gi|49613662|emb|CAG77113.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium atrosepticum SCRI1043] Length = 93 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++ A++ L+KG F +LA++ S LG F K + + ++F Sbjct: 9 HILVDTEQLANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY + V Sbjct: 68 SCELLKP---FGPVKTQFGYHVIKV 89 >gi|260103202|ref|ZP_05753439.1| peptidylprolyl isomerase [Lactobacillus helveticus DSM 20075] gi|260082993|gb|EEW67113.1| peptidylprolyl isomerase [Lactobacillus helveticus DSM 20075] Length = 306 Score = 70.8 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%) Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218 +++ + L + E + Y+ + Sbjct: 47 ITQQQYYDEMKKSQAGKSALANMIINRALEQQYGKYVSSKKVDKK-------------YS 93 Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIE---ISNDELQAEYEKNKEKYFSP-----EIR 270 YK Y + + ++ ++ +S L+ + +K++ Sbjct: 94 NYKKQYGSQFSAVLQQNGMTASTFKQNLKTNLLSEAALKHINKISKKQEQQAWKNYQPKV 153 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL-----GSFSKEYIPDVSL 325 TV+ ++ + A+ + LK GK F LA++ + + S + D + Sbjct: 154 TVQHILVAKKSTAESIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAF 213 Query: 326 ADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384 + F L K G+ T + GY + + + P+ F + KK I +++ + A ++ Sbjct: 214 KTAAFKL-KTGEVTESPVKSQSGYHVIKMIS-HPAKGK-FADHKKAIDDEIYASMAQDQA 270 Score = 38.0 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 89/301 (29%), Gaps = 64/301 (21%) Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95 + ++TV S K+ + + + K L N++ Sbjct: 32 NSGNNATVASYKGGKITQQQYY--------------------DEMKKSQAGKSALANMII 71 Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 L+Q G +V + + + F + L + G+ + + Sbjct: 72 NRALEQQ---YGKYVSSKKVDK---KYSNYKKQYGS----QFSAVLQQNGMTASTFKQNL 121 Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 L + S QA + Y +V +I++ + + + + Sbjct: 122 KTNLLSE---AALKHINKISKKQEQQAWKNYQPKVTVQHILVAKKS-------TAESIIK 171 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE------- 268 + K + + + K + +++ L + ++ K + E Sbjct: 172 QLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAFKTAAFKLKTGEVTESPVK 231 Query: 269 -------IRTVEQLV---FPNQKEA--DEAFQSLKKGKK-----FIQLAEEQGKSLSDIS 311 I+ + F + K+A DE + S+ + + + + G S+ D Sbjct: 232 SQSGYHVIKMISHPAKGKFADHKKAIDDEIYASMAQDQAVMKDVIATVLKNAGVSIKDND 291 Query: 312 L 312 L Sbjct: 292 L 292 >gi|320103011|ref|YP_004178602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida ATCC 43644] gi|319750293|gb|ADV62053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida ATCC 43644] Length = 370 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 42/396 (10%), Positives = 100/396 (25%), Gaps = 93/396 (23%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 + V + I +I +E + + ++ LV+ L Sbjct: 61 DQPLAVVNATPITRRDVQ--------RIMAQIELAPGAEIQDAYNM---AVEMLVNTELL 109 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 QF+ G+ + E+A L + + ++ Sbjct: 110 FQFLNRQGITVTKKDLDDELA---------------RLSESLKAQNLTLEQ--------- 145 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219 + G L D + +E + L ++ Sbjct: 146 ------ALAANGATMQELQKDLTRAKLWEKYVTRVA-------------TEERLKKYVAD 186 Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 +D + + +L ++++ S Sbjct: 187 NQDLFNGVKVTARHILLKVPEGASEEVKAS-----------------------------I 217 Query: 280 QKEADEAFQSLKKGK-KFIQLAEEQGKS------LSDISLGSFSKEYIPDVSLADSIFSL 332 + + ++ GK +F + A++ + S LG F + A++ F Sbjct: 218 KAKLLAIKAEIESGKIEFAEAADKYSEDDGNKQQPSGGFLGEFYRRGQLIEEFAEAAFK- 276 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 K G + + FGY + V+N F++ + Q E + ++ + Sbjct: 277 CKPGVISDPVETEFGYHLILVTNRDEGQPFDFEKGRDIAFQQFESELREEVI--LAEKAK 334 Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428 + ++ + G Sbjct: 335 AKIEKQPMPSDLVPPATSPETAPSPTPASATPASGS 370 >gi|199599418|ref|ZP_03212812.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus rhamnosus HN001] gi|199589671|gb|EDY97783.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus rhamnosus HN001] Length = 300 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 32/235 (13%) Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V G + D K+ ++ IVL S+ + F K K Sbjct: 25 VANMKGAKVTKDEYYDAMKKTTTGQATLRNMIVLKALEQQYPNKVSDKKVNSQFNKLKKQ 84 Query: 224 Y-----RAPEY---------KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 Y E +I L+ + + + +++++++K + K Sbjct: 85 YGSSFDSTLEQNGYTESSFKDQIRTTLYSEVALKDMKKPTTKQIESQWKKYQPKI----- 139 Query: 270 RTVEQLVFPNQKEADEAFQSLKKG---KKFIQLAEEQGKSLSDISLG-----SFSKEYIP 321 V+ ++ + EA + +K K F LA++ + G + + Sbjct: 140 -QVQHILVKTEDEAKQIISDYQKDPTEKNFESLAKKNSIDNGTKNKGGKLAAFDNTDTSL 198 Query: 322 DVSLADSIFSLAKKGDFTP-VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375 D + + F L K GD T + +GY + V +I + + +E KKD+ Q+ Sbjct: 199 DSTFKSAAFKLKKAGDITTTPVKTQYGYHVIRVISI--AKKGTMKEHKKDLEKQI 251 >gi|187929591|ref|YP_001900078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] gi|309781629|ref|ZP_07676363.1| peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA] gi|187726481|gb|ACD27646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii 12J] gi|308919604|gb|EFP65267.1| peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA] Length = 261 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----------DEAFQSLKKGKKF 296 E + + + Y+ + ++ +I ++F A Q L+ + F Sbjct: 85 EPTRADCERYYQNHPARFRRNDIVYASHILFAVTDRAPVALLLQKAQQTLQQVLEAPETF 144 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A E S SLG + +F + G ++ FG+ + + Sbjct: 145 EAVAREVSNCPSAGVGGSLGQLLRGDSV-PEFERVLFDSTETGVLPRIVKTRFGFHVVRI 203 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 + TV F V+ +IA + + K + Y + ++ + ++ + Sbjct: 204 EHRVAGDTVPFDAVEAEIAQYL-EARVRHKATQQYVSI------------LASQAQVEGV 250 Query: 414 DLPLVD 419 DL + Sbjct: 251 DLGAAN 256 >gi|329962622|ref|ZP_08300570.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057] gi|328529653|gb|EGF56551.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057] Length = 523 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 60/425 (14%), Positives = 126/425 (29%), Gaps = 65/425 (15%) Query: 249 SNDE-----LQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQSLK 291 +++E + Y+K K + ++R V + + + + D ++SL Sbjct: 108 TDEETNERVARRFYDKMKSGRRAGQVR-VSHIYKSLPQNISGYTLRKVEAKMDSIYESLG 166 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 KG + K SD + + + F L + G+ + G I Sbjct: 167 KGAT-AAAFDAYVKDFSDDKTTFWVRWLQMPAEFEEVAFDL-QPGEISRPFFTPQGIHIV 224 Query: 352 HVSNIKPSFTVSFQEVKKD-IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410 V K F EVK++ I + R + + ++L++ + Sbjct: 225 KVLERKA--VPPFDEVKEEMIRCRTRRHGMDKGTEALVEKLKQEYHYTPDRAGMEELMSK 282 Query: 411 VSIDLPLVDFAGKDVKGKEVA-AIPYKEQLLFRVFGKDDPLSKDHTVALPDGS----YMW 465 L G+ GKE A + + R + + Y Sbjct: 283 GQTGRTLFTLGGRSYTGKEFARFAAAHPEGIQRQLN---GFVMKSVLDYENNHLERKYPV 339 Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE--------------------------- 498 ++ D E+ ++ W KT E Sbjct: 340 FRLLMQKYREDMLFNEISN--REVWGRSKTDEAGLKGYFEDHRQNYHWEAPRYKGIVLHC 397 Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 S + ++ V ++ K G + + + + + E F + V + Sbjct: 398 TSKRVSKQVRKFLK-GLPENEWLDAIRLTFNVGDTPK-VQAEQGLFARGDNAYVDDLVFK 455 Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618 + P+ +S+ V KV ++ + L L IA L++ V + Sbjct: 456 GKEPAPV---MSFPFTAVLGKKVKGPEDYREVGGQLVTDYQNYLEQRWIAKLRAAGKVEI 512 Query: 619 HDNLI 623 + ++ Sbjct: 513 NQEVL 517 >gi|89093533|ref|ZP_01166481.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92] gi|89082223|gb|EAR61447.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92] Length = 93 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADS 328 ++ + EA+ + LK G F +LA++ S LG F + + D Sbjct: 7 ARHILVKTRDEAERLKKRLKLGNDFGKLAKKYSLCPSGKRHGDLGEFRRGQMVKP-FEDV 65 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352 +F + + FG+ + Sbjct: 66 VFKKPLH-EVHGPVKTRFGWHLIE 88 >gi|309388964|gb|ADO76844.1| SurA domain protein [Halanaerobium praevalens DSM 2228] Length = 425 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 88/280 (31%), Gaps = 26/280 (9%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-------TVVSVGRQKVPF 53 M + +R SR + + ++ + G L + G + V ++ Sbjct: 1 MFDTLRNNSR-IIVYLVVIAFVISGGFMGYGAYLNNRGGGQAPNQGPAVIAEVNGMEISQ 59 Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE--DIGLEAD 111 + + +Q Q ++S + + ++L+ L+ + E DI +E Sbjct: 60 QEYYSMLQQ------QAPNSSLSSSQI--IPFRYQVLEALIERKLILAKAEEFDIQVEVS 111 Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML----SRTDVVGM 167 V + N+ + LA +G E ++ L + T+ + Sbjct: 112 DSEVDENYNNI----LEQNEITDQELAETLAEQGSTIGELRENIKDSLQNTKTLTEAINQ 167 Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227 VG + S+ + + + + + S L + K + Sbjct: 168 GVGKVEVSDQEIQKLYNQRYLKVETESKKTETENSKQKESDSEPKLEEVSSDLKTEIKNK 227 Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267 + + + +I+I+ L+A ++ E Y Sbjct: 228 KRNEAINNWLKELKTDAQIKINQPVLKAYHDLENENYEQA 267 >gi|53722183|ref|YP_111168.1| rotamase/peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei K96243] gi|76817394|ref|YP_335277.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 1710b] gi|126456222|ref|YP_001075575.1| peptidyl-prolyl cis-trans isomerase domain-containing protein [Burkholderia pseudomallei 1106a] gi|167742587|ref|ZP_02415361.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 14] gi|167819750|ref|ZP_02451430.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 91] gi|167849600|ref|ZP_02475108.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei B7210] gi|167906559|ref|ZP_02493764.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei NCTC 13177] gi|167914915|ref|ZP_02502006.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 112] gi|217419213|ref|ZP_03450720.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 576] gi|226200237|ref|ZP_03795782.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pakistan 9] gi|242311165|ref|ZP_04810182.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106b] gi|254190243|ref|ZP_04896752.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254193423|ref|ZP_04899857.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei S13] gi|254263976|ref|ZP_04954841.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1710a] gi|254300502|ref|ZP_04967948.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 406e] gi|52212597|emb|CAH38623.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family protein [Burkholderia pseudomallei K96243] gi|76581867|gb|ABA51341.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei 1710b] gi|126229990|gb|ABN93403.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106a] gi|157810082|gb|EDO87252.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 406e] gi|157937920|gb|EDO93590.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pasteur 52237] gi|169650176|gb|EDS82869.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei S13] gi|217398517|gb|EEC38532.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 576] gi|225927745|gb|EEH23787.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pakistan 9] gi|242134404|gb|EES20807.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106b] gi|254214978|gb|EET04363.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia pseudomallei 1710a] Length = 265 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296 E + D + Y + ++ +I ++F ++EA+ L + + F Sbjct: 89 EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A E + SLG + ++F G +++ FG+ I + Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V +IA + A + ++ LA G ++ ++ Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255 >gi|289548355|ref|YP_003473343.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484] gi|289181972|gb|ADC89216.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484] Length = 275 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 80/208 (38%), Gaps = 17/208 (8%) Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKY-KDNYRAP---EYKRISYILFDV-HEKEKKI 246 V ++ ++ L ++ EK +P E ++ + + + I Sbjct: 64 VRGKIVEREAKKMGLSVTSKELDEYIEKNVGSKNLSPVVIELLKVEVLTQKITDRIARHI 123 Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306 I++D++ A Y N + P + + V + A+E + L KG ++ + Sbjct: 124 RITDDQITAYYYLNLRDFKLPAQVLLSRYVAEDLDTANELYYRLSKG--YLSV-----SD 176 Query: 307 LSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363 L + +G +S + +P+ + S ++G T I GY+I V + + Sbjct: 177 LRGVKVGPPMWYSIQTLPE--IVKSQLYPYEEGKVTKPIQTEAGYLILRVVRRRGGGILP 234 Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRL 391 +E K + ++ + E ++ + + Sbjct: 235 LEEAKPLVREKLLKERRQEVFRKWLEEV 262 Score = 43.4 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 21/241 (8%) Query: 270 RTVEQLVFP--NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327 R + L ++K+ +E L +GK + A++ G S++ L + ++ + +L+ Sbjct: 41 REIIHLPIAQASRKDMEEFLIELVRGKIVEREAKKMGLSVTSKELDEYIEKNVGSKNLSP 100 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK-DIANQMRITKASEKVKE 386 + L K T I I +++ + + ++ + Q+ +++ + + Sbjct: 101 VVIELLKVEVLTQKITDRIARHI-RITDDQ-ITAYYYLNLRDFKLPAQVLLSRYVAEDLD 158 Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 L L+ G L + D G V +I +++ Sbjct: 159 TANELYYRLSKGY---------------LSVSDLRGVKVGPPMWYSIQTLPEIVKSQLYP 203 Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 + + G Y+ +++ LEE V++ + E ++ Sbjct: 204 YEEGKVTKPIQTEAG-YLILRVVRRRGGGILPLEEAKPLVREKLLKERRQEVFRKWLEEV 262 Query: 507 V 507 + Sbjct: 263 L 263 >gi|288937797|ref|YP_003441856.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] gi|290513193|ref|ZP_06552555.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55] gi|288892506|gb|ADC60824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] gi|289774404|gb|EFD82410.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55] Length = 93 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +K A E L++G F LA+ K S LG F + + ++F Sbjct: 9 HILVKEEKLAHEILAKLERGISFDHLAKRYSKCPSGRHGGDLGEFPQGTMVGP-FDQAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SCPLLKP---YGPVKTKFGYHIIKV 89 >gi|269123720|ref|YP_003306297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus moniliformis DSM 12112] gi|268315046|gb|ACZ01420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus moniliformis DSM 12112] Length = 599 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 52/427 (12%), Positives = 136/427 (31%), Gaps = 65/427 (15%) Query: 83 VGLDKKILDNLVSGA-------TLDQFIEDIGLEADHGRVWGEIARSPL--FHGKDNKFS 133 + ++ D++++ ++ + + + + + F ++ KF Sbjct: 199 AEVKDEVKDDILNEKAKIYEKSLIENKFNNAKISISDKTIEPALNKLKEVFFEKEEYKF- 257 Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193 ++ L+ +V +F + E Sbjct: 258 --TYMDVLS--------------------QIVNLFFKQGNGYTEDFQNMIKGLIETDLDK 295 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 I + ++ + + + +L ++ + Y A EY + + +E+ Sbjct: 296 KIRIRDKAIESGLTLNQDLLPKY----QLEYIAEEYVSKLIGSYVA---------TEEEM 342 Query: 254 QAEYEKNKEKYFSPEIRTVEQL---VFPNQKEADEAFQSLKK------GKKFI----QLA 300 +A + K + + + E + P+ +A E + + + F +L+ Sbjct: 343 RAIFNKYQGAFDIQHTVSGEIIGMAYIPSDDDAKETENKVIELMKTITKENFADKARELS 402 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 ++ G + + LG + ++ + A+ G I FGY I V K Sbjct: 403 KDPGSAQNGGDLGKANINNFV-PEFRTAV-AKAEAGSIVGPIKTQFGYHIILVEE-KDEN 459 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSIDLPLVD 419 +K + + E++K ++E + + + I+ + + D Sbjct: 460 NKDIATLKHILIKVEAGERTKEEIKNKVLEIKELITSNKLTWENITSDTTGKYNEYGIKD 519 Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479 K + ++ + Y + + ++F D D S++ +Q E P + Sbjct: 520 HFSKVKQNDKLPVVGYDKTVNSKLFSAKVG---DFIEISLDDSFVIIQKTEDTPYKKVSY 576 Query: 480 EEVLTDV 486 EV + Sbjct: 577 NEVKEKL 583 Score = 53.8 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 90/266 (33%), Gaps = 32/266 (12%) Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ---ELGMISQ 69 V +F+ + + + + + ++ + +K+ F + ++ +++ Sbjct: 12 VITVFIAIAMLIPVFMSAYTYFSNREKKTVMLKIDGEKIYKEDFDKKYDNFSKQIESLNE 71 Query: 70 KIGFVVNSERARSVGLDKK-----ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 +I N ++ + L ++ +L V A I ++G A + + Sbjct: 72 QIIKAKNLDKEKYQALPEELVKGYVLAGQVYEALNKVLINELGARASKKEIEQK------ 125 Query: 125 FHGKDNKFSHDV-FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183 F +++ ++ L +G + + L + + + ++ +++ Sbjct: 126 FKELEDQLGGSKGLITALNAQGQTVENLRETIKMFLLNDKKLEIIKQKISVTDKEIEE-- 183 Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243 N R D S A + ++ KD+ + K L + Sbjct: 184 ------------RFNQRKFTEYEDKSFAEVK---DEVKDDILNEKAKIYEKSLIENKFNN 228 Query: 244 KKIEISNDELQAEYEKNKEKYFSPEI 269 KI IS+ ++ K KE +F E Sbjct: 229 AKISISDKTIEPALNKLKEVFFEKEE 254 >gi|189463690|ref|ZP_03012475.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM 17393] gi|189438640|gb|EDV07625.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM 17393] Length = 528 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 33/193 (17%) Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----------EQLVFPNQKE 282 Y +S + Y+K K + ++R L+ + Sbjct: 106 YRRQLAKTYLTDETVSELAARQIYDKMKANQRAGQVRVSHIFKSLPQTATSHLLRTTETR 165 Query: 283 ADEAFQSLKKG-KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 D + +L+ G F + D++F + K G+ + Sbjct: 166 MDSLYTALQNGQADFDACVRNFSDEKKSFWVSWLQ----MPAEFEDTVFKM-KPGEISRP 220 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRI---TKASEKVKEDYKR------- 390 G I V K + F++VK + I Q R K +E + E K+ Sbjct: 221 FFTPQGIHIVKVLERKD--ILPFEDVKDEIIRRQTRRHGMDKGTESLVEKLKKEYQYTPD 278 Query: 391 ---LEEFLALGTS 400 ++E LA G + Sbjct: 279 KVGMDELLAKGQT 291 >gi|152972768|ref|YP_001337914.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892379|ref|YP_002917113.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae NTUH-K2044] gi|262040911|ref|ZP_06014137.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012127|ref|ZP_08307289.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3] gi|150957617|gb|ABR79647.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544695|dbj|BAH61046.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041800|gb|EEW42845.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533942|gb|EGF60601.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3] Length = 93 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +K A E L++G F LA+ K S LG F + + ++F Sbjct: 9 HILVKEEKLALEILAKLERGVSFDHLAKRYSKCPSGRNGGDLGEFQQGAMVGP-FDQAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SCPLLKP---YGPVKTKFGYHIIKV 89 >gi|325106143|ref|YP_004275797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans DSM 12145] gi|324974991|gb|ADY53975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans DSM 12145] Length = 454 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 57/483 (11%), Positives = 131/483 (27%), Gaps = 102/483 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V VG + S + Q + G + + I+ +++S L Sbjct: 24 DKVVAVVGDNIILQSEVEQQYAQYILQ-----GTKPDP------NIKCYIMQSMLSQKLL 72 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159 + + + G V E+ M+ Sbjct: 73 TKQAAIDSIVVEDGDVDNEV--------------------------------ERRMRTMI 100 Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNN---RHVPAIADPSNAVLTQ 215 +R G R L + E R + ++ + + + + + Sbjct: 101 TRA------GGEQRLEEFLGRPVILYKDEIRPDIREQLVAQKMQAKITEKVEVTPLDVRR 154 Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275 +++ + + ++E+ + K E T Sbjct: 155 FYQAIPKD--------------SLPVYNTEVEVGEIVI-------YPKLTKEEKETY--- 190 Query: 276 VFPNQKEADEAFQSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331 + + + +K G F LA ++ G + L F + + F Sbjct: 191 ----KDKLEALRLRIKNGDSFATLARLYSQDPGSARDGGELPFFDRNTMAK-EFTAWAFK 245 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ---MRITKASEKVK 385 L K G+ +PV FG+ V + + V+ I + +A ++ Sbjct: 246 L-KPGELSPVFETEFGFHFLEVLERRG------ENVRARHILIVPDSPPAALERARVEID 298 Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445 Y+++ ++ + + ++ + + + V Sbjct: 299 SIYQKVVAKKMDFSAAASLYSGNNDTKYNGGMILNYESSNRTTYIPTDKLDPSIFLVVDT 358 Query: 446 KDDPLSKDHTVALPD---GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 V + Y ++ +K IP LE+ +K+ KT++ VS Sbjct: 359 MKVGSYSKPDVFTDNRGKKGYRFLYLKTKIPPHTANLEQDFPKIKEAAYEEKTSKVVSDW 418 Query: 503 ANQ 505 + Sbjct: 419 FEK 421 >gi|282917109|ref|ZP_06324867.1| foldase prsA [Staphylococcus aureus subsp. aureus D139] gi|282319596|gb|EFB49948.1| foldase prsA [Staphylococcus aureus subsp. aureus D139] Length = 320 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149 Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + ++K KF ++A+++ G + D LG K Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSDVVKSSFGYHIIK-----ADKPTDFNSQKQSLKEKLVD 262 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 263 QKVQKNPKLLTDAYKDLL 280 >gi|254522729|ref|ZP_05134784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas sp. SKA14] gi|219720320|gb|EED38845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas sp. SKA14] Length = 299 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 22/189 (11%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK---GKK 295 + + ++++ + +E+N E++ SP+ + ++ AD+ G++ Sbjct: 115 LEDAIDDRVPTDEDCRRYFEQNPERFRSPDRVRLRHILLAAP--ADDVAGRFAARTEGER 172 Query: 296 -----------FIQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 F A S LG + +F L + G Sbjct: 173 LVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTT-PEFDRQVFRLRE-GLAGFP 230 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401 + +GY + V + F+ V + + + + +V+ +L+E + Sbjct: 231 VESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQREVQAYLLQLQE-RYPVRGL 289 Query: 402 DEISRREKI 410 +EI I Sbjct: 290 EEIEAEADI 298 >gi|294786339|ref|ZP_06751593.1| peptidylprolyl isomerase PrsA1 [Parascardovia denticolens F0305] gi|315225880|ref|ZP_07867668.1| peptidyl-prolyl cis-trans isomerase [Parascardovia denticolens DSM 10105] gi|294485172|gb|EFG32806.1| peptidylprolyl isomerase PrsA1 [Parascardovia denticolens F0305] gi|315120012|gb|EFT83144.1| peptidyl-prolyl cis-trans isomerase [Parascardovia denticolens DSM 10105] Length = 300 Score = 70.8 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 79/234 (33%), Gaps = 31/234 (13%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 S A + + ++ Y+D Y + + + L +K ++S + Sbjct: 74 SVSQAQVDKAYKGYQDQYGSGFDSYLSQNNYTKDSFKRSLRTNLLSEVALKKLKKVSPAQ 133 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L ++ TV+ ++ +Q A + L +GK F +LA+ S Sbjct: 134 LADAWKDFHP------QVTVQHILVSDQATAQQVIDQLGQGKDFSELAKTYSLDTSSKDE 187 Query: 313 G----SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 G S D + D+ ++L + T + GY + + + +F K Sbjct: 188 GGKVTFTSSNRAYDSTFKDAAYALTQGKYTTSPVKVVDGYEVIKM--VSNPSKGTFASRK 245 Query: 369 KDIANQ-----MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417 K++ +R + ++V + E+ + K+ + + Sbjct: 246 KELTEAVYAKWLRDSTVMKQVISQVLKNEKVQIQDKDLSNALDSYKVPAATVQT 299 >gi|255036261|ref|YP_003086882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter fermentans DSM 18053] gi|254949017|gb|ACT93717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter fermentans DSM 18053] Length = 457 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 43/358 (12%), Positives = 101/358 (28%), Gaps = 83/358 (23%) Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67 W+ + + + VS + V + S + + Q Sbjct: 2 KVNKWIGAHLAAIFMLLCSVVSFGQGQQGVSLDKIIARVDNHYILSSELEDMYNQYKA-- 59 Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127 R ++L++L+ L E + + V GE+ + Sbjct: 60 -----------EGRGAPEKCQLLESLIINKMLLAKAEIDSVTVEDKEVDGELNAKMNYMV 108 Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187 + +F + + + G + + + + +V Sbjct: 109 Q--RFGSEK--NIVEAYGKSIENLKGELRQQVKEQKIVEKM------------------- 145 Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH--EKEKK 245 R++ + A + ++F + + YI +V KK Sbjct: 146 -QRTIS----------GNVKITPADVRKFFNSIPKD-------SLPYIPSEVEVGHIVKK 187 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305 ++ ++ + +++ E Q +KG+ F LA+ + Sbjct: 188 GTVTREQKEKL-----------------------RQQLQELKQRAEKGEDFAMLAQIYSE 224 Query: 306 SLSDISLGS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 L +G F+K + L K G+ + VI FG+ + + + + Sbjct: 225 DLGSAKVGGDLGFAKRGQMVPEFEGAALGL-KPGEMSNVIESQFGFHLIKLIETRGAE 281 >gi|157960692|ref|YP_001500726.1| SurA domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845692|gb|ABV86191.1| SurA domain [Shewanella pealeana ATCC 700345] Length = 434 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 102/326 (31%), Gaps = 59/326 (18%) Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 L ++++ L+ Q + IGL ++ I K+ K + +++ Sbjct: 67 ALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQTIENI----AKEQKITVAQMKAQIES 122 Query: 144 EGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 EG +Y + + ++ ++ ++ S ++ + E + + H+ Sbjct: 123 EGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLINEQ-GLKEVEFQIGHI 181 Query: 203 PAIADPSNAVLTQWFEKYK------------DNYR-----------APEYKRISYILFDV 239 PS+A Q K D++R A E Y+ + Sbjct: 182 LIDV-PSDANSQQLEAASKRSATVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINE 240 Query: 240 HEKEKKIEISNDE---------------LQAEYEKNKEKYFSPEIRTVEQLVFP-----N 279 + + + + + + + ++ + Sbjct: 241 MPTLFAEVVGDAKTGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRHILLKPSPILS 300 Query: 280 QKEA----DEAFQSLKKGK-KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFS 331 ++ A D +K G+ KF LA + + + G ++ I + + + S Sbjct: 301 EERAKSMMDRFLAQVKSGEAKFEDLARQYSEDPGSAAKGGELGWADPNIYVPAFSQELNS 360 Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIK 357 L + G ++ + G+ I + + Sbjct: 361 L-EVGAYSEPFRSTHGWHIVQLEEKR 385 Score = 61.5 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 98/306 (32%), Gaps = 37/306 (12%) Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215 +L+R + G+ +L LDQ ++ + A + Sbjct: 75 RLILTRLQLQMADRIGLHIGDLQLDQ----------------TIENIAKEQKITVAQMKA 118 Query: 216 WFEKYK---DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 E YR + I+ + +++I++S E+ + E+ + Sbjct: 119 QIESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLINEQGLKEVEFQI 178 Query: 273 EQLVFPNQKEAD------------EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320 ++ +A+ + LK G F +A + G + I Sbjct: 179 GHILIDVPSDANSQQLEAASKRSATVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNI 238 Query: 321 PD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD-IANQMRIT 378 + +L + AK GD I + G+ I V + + T QEVK I + Sbjct: 239 NEMPTLFAEVVGDAKTGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRHILLKPSPI 298 Query: 379 KASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437 + E+ K R + G ++++R+ S D G+ +P Sbjct: 299 LSEERAKSMMDRFLAQVKSGEAKFEDLARQY---SEDPGSAAKGGELGWADPNIYVPAFS 355 Query: 438 QLLFRV 443 Q L + Sbjct: 356 QELNSL 361 >gi|325268743|ref|ZP_08135371.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM 16608] gi|324988911|gb|EGC20866.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM 16608] Length = 480 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 33/296 (11%) Query: 240 HEKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA----------F 287 + +++S E++ + K P VE L + E +E Sbjct: 171 EKLVGDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINRIKNQLRDYT 230 Query: 288 QSLKKGK-KFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342 + KG+ F LA E+ G + LG + + D + A + F+L + V+ Sbjct: 231 DRITKGETSFATLARLYSEDPGSARQGGELGYMGRGML-DPTFAAAAFNLTDPKKVSKVV 289 Query: 343 HGSFGYVIAHVSNIKPSFT-------VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 FGY I + + + + A + R+ ++ E+ Sbjct: 290 ESEFGYHIIQLIDRRGDKVNCRHILLKPNVSMASIDAAKERLDSIGGDIRNGKFTFEDAT 349 Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455 A + + ++ + +K +P + + D+ Sbjct: 350 AYLSDDKDTKNNHGLMVNSSENARTSRFKMK-----DLPTEVARIVDTLKVDEVSQPFQM 404 Query: 456 VALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509 V P G + V++KE IP + E ++ + + + + V E Sbjct: 405 VN-PRGKVVCAIVKLKERIPEHRATITEDFQAMRDIVTAQRRKDILHDWVVKKVKE 459 >gi|328793049|ref|XP_001120560.2| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like, partial [Apis mellifera] Length = 127 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%) Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--SDISLGSF 315 ++ K+K + V ++ Q + EA + LK G KF ++A + S LG Sbjct: 22 KEEKKKGNAGNAIKVRHILCEKQSKILEALEKLKAGGKFNEVAAIYSEDKARSGGDLGWM 81 Query: 316 SKEYIPDVSLADSIFSLAKKGDFT-----PVIHGSFGYVIAHVSNIK 357 K + ++ F+L + P I FGY I V + K Sbjct: 82 IKGSMVGP-FQEAAFALPISSINSPIYTDPPIKTKFGYHIIMVESKK 127 >gi|15597192|ref|NP_250686.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PAO1] gi|107101424|ref|ZP_01365342.1| hypothetical protein PaerPA_01002464 [Pseudomonas aeruginosa PACS2] gi|116049947|ref|YP_791243.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa UCBPP-PA14] gi|218892046|ref|YP_002440913.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa LESB58] gi|254235079|ref|ZP_04928402.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa C3719] gi|254240433|ref|ZP_04933755.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa 2192] gi|296389594|ref|ZP_06879069.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PAb1] gi|313111192|ref|ZP_07797014.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa 39016] gi|9947998|gb|AAG05384.1|AE004626_3 peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PAO1] gi|115585168|gb|ABJ11183.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa UCBPP-PA14] gi|126167010|gb|EAZ52521.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa C3719] gi|126193811|gb|EAZ57874.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa 2192] gi|218772272|emb|CAW28054.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa LESB58] gi|310883516|gb|EFQ42110.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa 39016] Length = 92 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328 ++ + EA + Q L KG+ F LA++ S LG + S+ ++ Sbjct: 6 ARHILVKTEAEAAQLKQRLAKGEDFATLAKKHSTCPSGKRGGDLGEVRPGQMV-RSIDNA 64 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHV 353 IF G + FGY + V Sbjct: 65 IFR-KPVGVLQGPLKSQFGYHLLEV 88 >gi|23097538|ref|NP_691004.1| protein secretion protein [Oceanobacillus iheyensis HTE831] gi|22775761|dbj|BAC12039.1| protein secretion (post-translocation molecular chaperone) [Oceanobacillus iheyensis HTE831] Length = 303 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 6/151 (3%) Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291 I Y K IEI +EL++ Y+ +Y + ++ + + A++ +Q L+ Sbjct: 129 IKYRYQLEQLLTKNIEIPEEELRSYYDTYGNQYDFSSSVKLSHILVEDMETAEQVYQELE 188 Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL-----ADSIFSLAKKGDFTPVIHGSF 346 G F LA E G + ++ ++ Sbjct: 189 DGASFRLLAREYSIDDETRQNGGYMGSIYTSSQFLLDSYETQAANMENH-TYSEPFQAEN 247 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 G I ++ P+ ++ EV+ + +++ + Sbjct: 248 GVAIMYLHRKLPAIKFTYDEVQPYVHSEVAM 278 >gi|15924831|ref|NP_372365.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp. aureus Mu50] gi|15927415|ref|NP_374948.1| hypothetical protein SA1659 [Staphylococcus aureus subsp. aureus N315] gi|21283511|ref|NP_646599.1| hypothetical protein MW1782 [Staphylococcus aureus subsp. aureus MW2] gi|49486658|ref|YP_043879.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650630|ref|YP_186723.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus COL] gi|87162356|ref|YP_494473.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195663|ref|YP_500469.1| protein export protein PrsA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150394374|ref|YP_001317049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus JH1] gi|151221945|ref|YP_001332767.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus subsp. aureus str. Newman] gi|156980157|ref|YP_001442416.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp. aureus Mu3] gi|161510056|ref|YP_001575715.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142176|ref|ZP_03566669.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315172|ref|ZP_04838385.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732497|ref|ZP_04866662.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006629|ref|ZP_05145230.2| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793800|ref|ZP_05642779.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9781] gi|258413737|ref|ZP_05682010.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9763] gi|258420756|ref|ZP_05683695.1| foldase prsA [Staphylococcus aureus A9719] gi|258438417|ref|ZP_05689701.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A9299] gi|258443862|ref|ZP_05692201.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A8115] gi|258447317|ref|ZP_05695464.1| peptidylprolyl isomerase [Staphylococcus aureus A6300] gi|258448200|ref|ZP_05696327.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A6224] gi|258452669|ref|ZP_05700668.1| foldase prsA [Staphylococcus aureus A5948] gi|258453367|ref|ZP_05701350.1| foldase prsA [Staphylococcus aureus A5937] gi|262052668|ref|ZP_06024860.1| hypothetical protein SA930_0804 [Staphylococcus aureus 930918-3] gi|269203478|ref|YP_003282747.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus ED98] gi|282895139|ref|ZP_06303358.1| foldase prsA [Staphylococcus aureus A8117] gi|282924172|ref|ZP_06331847.1| foldase prsA [Staphylococcus aureus A9765] gi|282928579|ref|ZP_06336178.1| foldase prsA [Staphylococcus aureus A10102] gi|284024887|ref|ZP_06379285.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus 132] gi|294850269|ref|ZP_06791004.1| foldase prsA [Staphylococcus aureus A9754] gi|295406147|ref|ZP_06815955.1| foldase prsA [Staphylococcus aureus A8819] gi|296276027|ref|ZP_06858534.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus MR1] gi|297207443|ref|ZP_06923880.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244929|ref|ZP_06928806.1| foldase prsA [Staphylococcus aureus A8796] gi|300911528|ref|ZP_07128973.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus TCH70] gi|304380557|ref|ZP_07363232.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|46396696|sp|P60747|PRSA_STAAM RecName: Full=Foldase protein prsA; Flags: Precursor gi|46396697|sp|P60748|PRSA_STAAN RecName: Full=Foldase protein prsA; Flags: Precursor gi|46396698|sp|P60749|PRSA_STAAW RecName: Full=Foldase protein prsA; Flags: Precursor gi|56749190|sp|Q6G894|PRSA_STAAS RecName: Full=Foldase protein prsA; Flags: Precursor gi|81694206|sp|Q5HET4|PRSA_STAAC RecName: Full=Foldase protein prsA; Flags: Precursor gi|122540695|sp|Q2G2S6|PRSA_STAA8 RecName: Full=Foldase protein prsA; Flags: Precursor gi|123485269|sp|Q2FFQ5|PRSA_STAA3 RecName: Full=Foldase protein prsA; Flags: Precursor gi|189037914|sp|A7X3U8|PRSA_STAA1 RecName: Full=Foldase protein prsA; Flags: Precursor gi|189037915|sp|A6U2U4|PRSA_STAA2 RecName: Full=Foldase protein prsA; Flags: Precursor gi|189037916|sp|A6QI23|PRSA_STAAE RecName: Full=Foldase protein prsA; Flags: Precursor gi|189037917|sp|A8YY10|PRSA_STAAT RecName: Full=Foldase protein prsA; Flags: Precursor gi|13701634|dbj|BAB42927.1| prsA [Staphylococcus aureus subsp. aureus N315] gi|14247613|dbj|BAB58003.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp. aureus Mu50] gi|21204952|dbj|BAB95647.1| prsA [Staphylococcus aureus subsp. aureus MW2] gi|49245101|emb|CAG43567.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284816|gb|AAW36910.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus COL] gi|87128330|gb|ABD22844.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203221|gb|ABD31031.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|149946826|gb|ABR52762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus JH1] gi|150374745|dbj|BAF68005.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus subsp. aureus str. Newman] gi|156722292|dbj|BAF78709.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp. aureus Mu3] gi|160368865|gb|ABX29836.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723778|gb|EES92507.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257787772|gb|EEV26112.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9781] gi|257839524|gb|EEV63995.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9763] gi|257843360|gb|EEV67770.1| foldase prsA [Staphylococcus aureus A9719] gi|257848461|gb|EEV72452.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A9299] gi|257851268|gb|EEV75211.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A8115] gi|257853904|gb|EEV76860.1| peptidylprolyl isomerase [Staphylococcus aureus A6300] gi|257858439|gb|EEV81315.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A6224] gi|257859644|gb|EEV82493.1| foldase prsA [Staphylococcus aureus A5948] gi|257864459|gb|EEV87204.1| foldase prsA [Staphylococcus aureus A5937] gi|259159417|gb|EEW44469.1| hypothetical protein SA930_0804 [Staphylococcus aureus 930918-3] gi|262075768|gb|ACY11741.1| protein export protein PrsA, putative [Staphylococcus aureus subsp. aureus ED98] gi|269941312|emb|CBI49709.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus TW20] gi|282589788|gb|EFB94873.1| foldase prsA [Staphylococcus aureus A10102] gi|282592967|gb|EFB97969.1| foldase prsA [Staphylococcus aureus A9765] gi|282762483|gb|EFC02624.1| foldase prsA [Staphylococcus aureus A8117] gi|285817521|gb|ADC38008.1| Foldase protein PrsA precursor [Staphylococcus aureus 04-02981] gi|294822885|gb|EFG39319.1| foldase prsA [Staphylococcus aureus A9754] gi|294969144|gb|EFG45165.1| foldase prsA [Staphylococcus aureus A8819] gi|296887906|gb|EFH26802.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178009|gb|EFH37257.1| foldase prsA [Staphylococcus aureus A8796] gi|300887160|gb|EFK82360.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus TCH70] gi|302751650|gb|ADL65827.1| peptidylprolyl isomerase, PrsA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340886|gb|EFM06811.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830213|emb|CBX35055.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130515|gb|EFT86501.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus CGS03] gi|315196811|gb|EFU27155.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus CGS01] gi|320141309|gb|EFW33154.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143563|gb|EFW35343.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329727671|gb|EGG64127.1| putative foldase protein PrsA [Staphylococcus aureus subsp. aureus 21172] gi|329729514|gb|EGG65916.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329732962|gb|EGG69306.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 320 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 47/198 (23%) Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277 +KYK+N R Y + KI+IS+ E++ + + ++ Sbjct: 110 DKYKENLRTAAYHK--------ELLSDKIKISDSEIK------------EDSKKASHILI 149 Query: 278 P-----------NQKEADEAFQSLKK-----GKKFIQLAEEQ----GKSLSDISLGSFSK 317 + KEA + + ++K KF ++A+++ G + D LG K Sbjct: 150 KVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLK 209 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 D ++F L K G+ + V+ SFGY I F K+ + ++ Sbjct: 210 GQT-DKDFEKALFKL-KDGEVSEVVKSSFGYHIIK-----ADKPTDFNSEKQSLKEKLVD 262 Query: 378 TKASEKVKEDYKRLEEFL 395 K + K ++ L Sbjct: 263 QKVQKNPKLLTDAYKDLL 280 >gi|212711199|ref|ZP_03319327.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM 30120] gi|212686367|gb|EEB45895.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM 30120] Length = 451 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 69/447 (15%), Positives = 131/447 (29%), Gaps = 87/447 (19%) Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132 N + L ++I+D LV + Q + + V IA + N Sbjct: 65 RNANQQVPDDQTLRQQIIDRLVMDNIMLQMANQMQINIPEEAVNTTIADI----ARQNNL 120 Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192 + RL +GIN +Y K + +V N Sbjct: 121 TLPQMEKRLTADGINIAKYRSEIRKEMLLAEVRN----------------------NEVR 158 Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252 I + + V A+AD ++ + + +S+IL + E Sbjct: 159 RRITILPQEVDALADQMDSQMNA-----------QKGVNLSHILIPLPENP--------- 198 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 +PE + + D+ LKKG F +LA + Sbjct: 199 -------------TPEQ------LAKAESLVDKILSDLKKGSDFGKLAIAYSADPQALKG 239 Query: 313 GSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ--EVK 368 G+ + ++ +D + + AKKGD I G+ I V+ + EVK Sbjct: 240 GNMGWSRLQELPVVFSDELKN-AKKGDIVGPIRSGVGFHILRVNEVSGDTHQPISVTEVK 298 Query: 369 KD---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-KIVSIDLPLVDFAGKD 424 + + + A+ + ++ + +E S +E ++ + L + Sbjct: 299 ARHILLKSSPIMDDATAR-QKLTQLAQEIRNGRISFEEAAKENSEDPGSALKGGELGWNM 357 Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKLEEVL 483 + A +L + P S H + L D + D+ Sbjct: 358 PDVYDPAFRDALMKLKKGEISQPVPSSFGWHLIQLEDTRSV-----------DKTDAAKK 406 Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEY 510 + K EE + + Sbjct: 407 DQAYRLLFNRKFNEEAQTWMQEQRAAA 433 >gi|189499014|ref|YP_001958484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides BS1] gi|189494455|gb|ACE03003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium phaeobacteroides BS1] Length = 440 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 138/426 (32%), Gaps = 34/426 (7%) Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163 + G R+ + + + ++ + +AR E + + Sbjct: 23 QRAGAAVAD-RIVAVVGNEMIMQSQVDE------QAMMARLQYTEAKNDPSLKAGILENL 75 Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223 V V + + + Q E R+ + + +I + + + + Sbjct: 76 VTRKIV--LTKARIDSIQVDESDIEKRTDERMRFLRSKFSSIEEMESTFSKSY--AVIEK 131 Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVF----- 277 + + I +K + ++ +E++ Y N++K PE V Q+V Sbjct: 132 EIKDDIRDQQLINNLRRQKMMGVNVTYEEVEDFYGANRDKLPVVPEAVEVSQVVMYPKVT 191 Query: 278 -----PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSI 329 + + Q L+ G+ F LA E + LG +S+ + Sbjct: 192 AEAKAKARAAIEAMQQRLRSGENFAALAREYSQDPGSARLGGDLGYSRRGEFVKNYEKVA 251 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 F L ++G+ + ++ FGY I + + + + + + + A ++ Sbjct: 252 FGL-EEGEISGIVETRFGYHIIQLLDKEQDAVHTRHILIVFDRSTLDAPAAKAALEMIRS 310 Query: 390 RLEEFLALGTSMDEISRREKIVSIDLP---LVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446 + ++ + E++R + ++ V+++ + + + R F K Sbjct: 311 ---DIISGKSDFAEMAREYSDDPVSSKYGGVIRNTETGETRFAVSSLRDQLKTVVRSFKK 367 Query: 447 DDPLSKDHTVALPDGS--YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 +S VA G+ Y ++ PA L ++K K N Sbjct: 368 VGDISSVVRVAPESGAPFYAIFKLNSREPAHKLDLSSDYARLEKLAIDEKQNRLFQEWIN 427 Query: 505 QLVLEY 510 +L E Sbjct: 428 ELQKEV 433 Score = 45.8 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 56/447 (12%), Positives = 121/447 (27%), Gaps = 86/447 (19%) Query: 17 FLVVLFVPFLIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75 FL ++ V F++ + V VG + + S + + Sbjct: 7 FLRLVAVVFIMVAAGFQRAGAAVADRIVAVVGNEMIMQSQVDE---------QAMMARLQ 57 Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 +E L IL+NLV+ + ++ D + + +F Sbjct: 58 YTEAKNDPSLKAGILENLVTRKIVLTKARIDSIQVDESDIEKRT-------DERMRFLRS 110 Query: 136 VFVSRLAREGINEKEY---IDHYTKMLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRS 191 F S E K Y + ++ M N+ ++ + FY NR Sbjct: 111 KFSSIEEMESTFSKSYAVIEKEIKDDIRDQQLINNLRRQKMMGVNVTYEEVEDFYGANRD 170 Query: 192 VDYIVLNNRHVPAIA---DPSN-----------------------AVLTQWFEKYKDN-- 223 +V V + + A L + + + + Sbjct: 171 KLPVVPEAVEVSQVVMYPKVTAEAKAKARAAIEAMQQRLRSGENFAALAREYSQDPGSAR 230 Query: 224 ------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE--QL 275 Y +Y +E +I ++ + + + E V + Sbjct: 231 LGGDLGYSRRGEFVKNYEKVAFGLEEGEIS---GIVETRFGYHIIQLLDKEQDAVHTRHI 287 Query: 276 VFP------NQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324 + + A A + ++ F ++A E G + + Sbjct: 288 LIVFDRSTLDAPAAKAALEMIRSDIISGKSDFAEMAREYSDDPVSSKYGGVIRNTETGET 347 Query: 325 ----------LADSIFSLAKKGDFT-----PVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 L + S K GD + G+ Y I +++ +P+ + Sbjct: 348 RFAVSSLRDQLKTVVRSFKKVGDISSVVRVAPESGAPFYAIFKLNSREPAHKLDLSSDYA 407 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLA 396 + K + +E L++ + Sbjct: 408 RLEKLAIDEKQNRLFQEWINELQKEVY 434 >gi|223997298|ref|XP_002288322.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975430|gb|EED93758.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 120 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 T ++ P ++A++ L + F LA E S SLGSF + D Sbjct: 26 TARHILVPTIEDANDILGKLAEN-SFTSLASEYSTCPSKARGGSLGSFGPGTMVK-EFDD 83 Query: 328 SIFS-LAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 IFS K G+ + FGY + V Sbjct: 84 VIFSPETKMGEVVGPVKTQFGYHLIVVDKRTGG 116 >gi|152972767|ref|YP_001337913.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579081|ref|YP_002241160.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342] gi|238892378|ref|YP_002917112.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae NTUH-K2044] gi|262040912|ref|ZP_06014138.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937798|ref|YP_003441857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] gi|330012128|ref|ZP_08307290.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3] gi|150957616|gb|ABR79646.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568139|gb|ACI09915.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342] gi|238544694|dbj|BAH61045.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041801|gb|EEW42846.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288892507|gb|ADC60825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola At-22] gi|328533943|gb|EGF60602.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3] Length = 93 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +K A + + LK G F +LA++ S LG F + + + +F Sbjct: 9 HILVKEEKLALDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S + + T +H FGY I V K Sbjct: 68 SCPEL-EPTGPLHTQFGYHIIKVLYRK 93 >gi|291407685|ref|XP_002720151.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)-like [Oryctolagus cuniculus] Length = 131 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G KF ++A + + + LG ++ + ++ Sbjct: 39 KVRHILCEKHGKIMEAMEKLKSGMKFSEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L G P + FGY I V K Sbjct: 98 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131 >gi|262164102|ref|ZP_06031841.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223] gi|262027630|gb|EEY46296.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223] Length = 388 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 116/343 (33%), Gaps = 85/343 (24%) Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135 N + L +++L+ L+ Q E IG++ D R+ I K N+ + + Sbjct: 16 NQPLPQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEI----AKSNQQTQE 71 Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195 +S +A+EG+ E+ R V + L+ + E ++ + Sbjct: 72 QLISSVAQEGLTYPEF---------REQVRKEMAASDARNALVRRRINILPAEVDTLAEL 122 Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255 + A ++A + +IS+I V E + K E Sbjct: 123 L---------AQETDATVQ---------------YKISHIQLRVEEGQDKSE-------- 150 Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLSDISL 312 + A++ LK G F Q+A K +L Sbjct: 151 -----------------------AESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDW 187 Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV----- 367 G KE +P AD I + KG G+ I + ++K TV+ EV Sbjct: 188 GWMRKEEMP-TIFADQI-KMQNKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHI 245 Query: 368 --KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408 K I + A +++ E +R++ + E++++ Sbjct: 246 LIKPTII--LSDEGAQKQLNEFVQRIKN---GEATFGELAQQY 283 >gi|304405852|ref|ZP_07387510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] gi|304345095|gb|EFM10931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus curdlanolyticus YK9] Length = 364 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 23/163 (14%) Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ---------------KEADEAFQS 289 + + + +++A Y+K + + TV ++ + K+A E Q Sbjct: 163 EQNVKDADMKAIYDKAPSDFNN---ITVRHILIGFKDPSTGKEKLSKADALKKAQEVKQK 219 Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA--DSIFSLAKKGDFTPVIHGSFG 347 L+ G + LA++ G + P V + + + G + +G Sbjct: 220 LEAGGDWAALAKQYSDDEGSKDKGGLYENQEPRVWVEAFKKAANTQEIGKIGDPVETEYG 279 Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390 Y + V + T ++++V + +++R + ++ + + + Sbjct: 280 YHVMKVEKRE---TRTWEQVPQATKDELRKSASTTVLNDFMTK 319 >gi|323529999|ref|YP_004232151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] gi|323387001|gb|ADX59091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp. CCGE1001] Length = 308 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 16/186 (8%) Query: 214 TQWFEKYKDNYRAPEY-KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 Q +E A E + ++ + ++ K +++ +++A+Y+ E + Sbjct: 111 KQHYESRPQVVAAVEQARTVAMTAAYLRDQVKPAPVTDADVKAKYDAIVATLGEFEYKPS 170 Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSFSKEYIPDV------ 323 + + A LKKG F QLA++ + +L S Sbjct: 171 A-IAVKDADTAQTVLTQLKKGTDFAQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNW 229 Query: 324 --SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM---RIT 378 LA+++ L + G + + + I V + + + ++K + Q+ + Sbjct: 230 PQPLAEALVKLPQGGVSSAPVQVGDAFWILRVDEKRATQIPQYDQIKDTLRKQLEQVALQ 289 Query: 379 KASEKV 384 KA+ +V Sbjct: 290 KATAQV 295 Score = 38.0 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 66/244 (27%), Gaps = 21/244 (8%) Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453 G + + + + + ++P +K + +A +++ + + + Sbjct: 64 ARVNGVVITQAQLDDAVRASNVPDTPALRASIKNQLIARELFRQAAEKQHYESRPQVVAA 123 Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVL---TDVKKDWKTVK----TAEEVSSKANQL 506 A + PA +V + + + Q Sbjct: 124 VEQARTVAMTAAYLRDQVKPA-PVTDADVKAKYDAIVATLGEFEYKPSAIAVKDADTAQT 182 Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQIN---------RMDNENKFFGYDGISQVFSGPV 557 VL K+G +F + K + + + P Sbjct: 183 VLTQLKKGTDFAQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNWPQPLAEALVKLPQ 242 Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQ 613 V P++ G ++ + +V + + + KD L Q+ + V+ L Sbjct: 243 GGVSSAPVQVGDAFWILRVDEKRATQIPQYDQIKDTLRKQLEQVALQKATAQVVVDLMKN 302 Query: 614 YSVT 617 + Sbjct: 303 AKIQ 306 >gi|237508659|ref|ZP_04521374.1| ppic-type ppiase domain protein [Burkholderia pseudomallei MSHR346] gi|235000864|gb|EEP50288.1| ppic-type ppiase domain protein [Burkholderia pseudomallei MSHR346] Length = 265 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296 E + D + Y + ++ +I ++F ++EA+ L + + F Sbjct: 89 EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDGTPLAPLRREAEATLARVLAEPQTF 148 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A E + SLG + ++F G +++ FG+ I + Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V +IA + A + ++ LA G ++ ++ Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255 >gi|222833212|gb|EEE71689.1| predicted protein [Populus trichocarpa] Length = 386 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 58/453 (12%), Positives = 127/453 (28%), Gaps = 91/453 (20%) Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 + + G + E L +++L+ L+ Q +D GL D V + Sbjct: 3 RVAQNIAEQGGQMPPEAL----LAREVLERLIVEKAQLQEAKDTGLRVDDYAVDQALTNV 58 Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182 + N SRL EG+NEK++ + + ++ + Sbjct: 59 ----ARQNGLDKAGLQSRLRAEGVNEKQFREELRRQITLQRLRE---------------- 98 Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY--RAPEYKRISYILFDVH 240 R V ++A + ++ + + +AP + +IL V Sbjct: 99 -----------------RDVDGRVRVTDADIDRYLAEQRSGGADKAPAAVNLGHILISVP 141 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 E E++ + + Q F+ + Sbjct: 142 ENASPAEVAE---------REARAKQAAEAARTQ-------------------GDFLAVV 173 Query: 301 EEQGKSLSDISLGSFS-KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 +E G+ + L +G G+ + V + Sbjct: 174 KEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGAGFHVLKVLEKSQA 233 Query: 360 FTVSFQE------VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 S + I +QM A++++ + +R++ + S + ++R Sbjct: 234 GMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVD---SGQASFESLAREFSQDG- 289 Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473 G +P EQ+L + + + +Q+ E Sbjct: 290 ---SARNGGDLGWASPGQFVPEFEQVLNAL-----QPGQVSDPLVSRFGVHLIQLIERRQ 341 Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506 A E+ V+ + K + + +L Sbjct: 342 AALTPREQ-RDMVRNVVRERKLETDYQTWLQEL 373 >gi|262378424|ref|ZP_06071581.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SH164] gi|262299709|gb|EEY87621.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens SH164] Length = 441 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 50/393 (12%), Positives = 115/393 (29%), Gaps = 64/393 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S I + + + V L+K+ LD L+ Sbjct: 36 DEVVAIVDNGVILKSDLIQGVAELKHQLETQKREVPP-----QAFLEKQALDQLILRQAQ 90 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI---DHYT 156 + + ++ D + + + + + + F +L + Y + Sbjct: 91 LEQVRRYNVKPDEKSLNEAVMKVA---SQSGTKTLEAFQQKLDA--MAPGTYESLRNRIA 145 Query: 157 KMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIADPS 209 + L+ + + ++ S+ ++ Q + V + + + S Sbjct: 146 EDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQAALGSQVHVIHARITPKDKQTANVES 205 Query: 210 NAV--------------LTQWFEKYKDN-------YRA----PEYKRISYILFDVHEKEK 244 A +++ + K +R+ P V + + Sbjct: 206 VAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMGFRSLADIPAELAARVSALPVGQTTE 265 Query: 245 KIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 I + L+ K E+ ++ + D + LK G Sbjct: 266 LIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQPSEVVSPENAKHMIDNIYNRLKAG 325 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA + G + SLG S + + + S G + FG+ Sbjct: 326 EDFTVLASTFSTDTGSARDGGSLGWVSPGVMV-PEFEEKMKS-TPVGQVSAPFQTQFGWH 383 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 I V++ + +E ++ +A Q+ + E Sbjct: 384 ILQVTDTRQQDMT--EEYQERMARQILGERQFE 414 >gi|284035738|ref|YP_003385668.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale DSM 74] gi|283815031|gb|ADB36869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale DSM 74] Length = 458 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 86/244 (35%), Gaps = 32/244 (13%) Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + S + + ++ + ++++ + + + + ++D + Sbjct: 49 EAYQSYVGQNQTPPQKCQLLESLVINKMMLAKAEIDSVVVDDKIVDSELDSRMQ------ 102 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK---KIEISND 251 S+ + + + K + ++ ++ ++K ++++ Sbjct: 103 -------YMVQQFGSDKNIVEAYGKSLEMLKSELRSQVKDQKVVQKMQQKITTDVKVTPR 155 Query: 252 ELQAEYE---KNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSL-------KKGKKFIQL 299 +++ Y+ K+ Y E+ + + F P +++ + Q L + G+ F +L Sbjct: 156 DVRRFYDGIPKDSLPYIPAEVEVGQIVRFAKPTKEQKEVLRQRLLDMKKRVEAGEDFAKL 215 Query: 300 AEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 A+E + + G F+K + + L K + V+ FG + + Sbjct: 216 AKENSEDVGSAQNGGDLGFAKRGMMVAPFEGAALKL-KPNQLSDVVESDFGLHLIQLIET 274 Query: 357 KPSF 360 + + Sbjct: 275 RGAE 278 >gi|126666859|ref|ZP_01737835.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter sp. ELB17] gi|126628575|gb|EAZ99196.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter sp. ELB17] Length = 92 Score = 70.4 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 T ++ + + +E + ++ G+ F ++A++ S LGSF + Sbjct: 2 AQATARHILVDTEAKCEELKKDIEGGQDFAEVAKKHSSCPSGGNGGDLGSFGPGQMV-PE 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 +FS A + FGY + V++ Sbjct: 61 FDTVVFS-ADLNTVQGPVKTQFGYHLLEVTSR 91 >gi|323343303|ref|ZP_08083530.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269] gi|323095122|gb|EFZ37696.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269] Length = 478 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 26/218 (11%) Query: 209 SNAVLTQWFEKYKDNYRAP---EYKRISYILFDVHEKEKKIEISNDELQAEYEK--NKEK 263 S L +W + R EYK + E K ++++ +++ + Sbjct: 133 SREKLEEWRNQTIAQMRQQMHDEYKNTQLVQKMRQELVKDVKVTPADVRNYFRNLPEDSI 192 Query: 264 YFSPEIRTVEQLVFP---NQKEADEAFQSLK-------KGKK-FIQLA----EEQGKSLS 308 F P VE + Q+E + L+ KG+ F LA E+ G + Sbjct: 193 PFVPTEVEVEIITKQPKITQEEVNRVKDELRGFTDRVMKGETTFATLARLYSEDPGTARQ 252 Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368 LG + + D + A F+L + ++ FGY I + + + V+ Sbjct: 253 GGELGYTGRGML-DPAFASVAFNLTDPKKISKIVETEFGYHIIQLIDKRGDKV----NVR 307 Query: 369 KDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEIS 405 + + + K K + ++ A + +E + Sbjct: 308 HILLKPVVSAEEIGKTKARLDSIADDIRADKMTFEEAA 345 >gi|308050216|ref|YP_003913782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica DSM 9799] gi|307632406|gb|ADN76708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica DSM 9799] Length = 93 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 11/86 (12%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330 ++ ++ +A E Q L+KG F LA++ S LG F K + + ++F Sbjct: 9 HILVKHEAKAQELLQQLEKGANFQTLAKKHSTCPSGKKGGHLGEFRKGDMV-PTFDKAVF 67 Query: 331 SLAKKGDF---TPVIHGSFGYVIAHV 353 G + FG+ I V Sbjct: 68 ----TGPILKPIGPVKTKFGFHIIKV 89 >gi|302877391|ref|YP_003845955.1| SurA domain [Gallionella capsiferriformans ES-2] gi|302580180|gb|ADL54191.1| SurA domain [Gallionella capsiferriformans ES-2] Length = 440 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 54/367 (14%), Positives = 122/367 (33%), Gaps = 84/367 (22%) Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 + + + + ++ + L+ ++L+ +++ QF ++ G+ Sbjct: 49 ITRLELNERLRMVVSQLKKQ-----GTPLPEGAVLETQVLERMIAEMLQAQFAKENGVRV 103 Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170 D ++ I R ++N S F+++L +G+N K++ + + T + Sbjct: 104 DDTQLDMAITRIAQ---QNNFPSLVEFMAKLESDGVNVKKFREEIRAEIVSTRLRE---- 156 Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-EKYKDNYRAPEY 229 R V + S+ + + K K EY Sbjct: 157 -----------------------------REVESKLVISDTEVDNYLSNKSKMGLDNDEY 187 Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289 ++ + S ++++A ++ AD+AF Sbjct: 188 HLAHILVVVPE------QASAEKIRA-----------------------ARERADQAFAQ 218 Query: 290 LKKGKKFIQLAE---EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 L G F Q++ + +L LG + + IP + + + +L K G T V+ Sbjct: 219 LSGGADFSQVSAGFSDAKDALKGGDLGWRAGDRIP-PAFMNELQNL-KPGQNTAVLRSPS 276 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-----LEEFLALGTSM 401 G+ I + + V + + K SE V E + +++ + G Sbjct: 277 GFHILKLVEKRGGSAPV---VITQTHARHILIKTSEIVTEAEAKKQLLEIKQRIDGGAGF 333 Query: 402 DEISRRE 408 E ++R Sbjct: 334 AEQAKRY 340 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 16/147 (10%) Query: 269 IRTVEQLVFPN-----QKEAD----EAFQSLKKGKKFIQLAE---EQGKSLSDISLGSFS 316 ++ + EA E Q + G F + A+ + G + L S Sbjct: 297 QTHARHILIKTSEIVTEAEAKKQLLEIKQRIDGGAGFAEQAKRYSQDGSAQQGGDLDWLS 356 Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376 +I L + G ++ FG+ + V + + S Q+ ++ + Sbjct: 357 PGQTV-PEFEGAINKL-QVGQM-GMVQTQFGWHLIQVLARRNTDV-SEQQKRQQARVSIG 412 Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDE 403 K+ E ++ ++L + + ++E Sbjct: 413 TFKSEELYQDWLRQLRDRAFVEYRLEE 439 >gi|116696205|ref|YP_841781.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] gi|113530704|emb|CAJ97051.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16] Length = 250 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 13/157 (8%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLK----KGKKF 296 E + Y+ E++ E + ++F P + A Q+L F Sbjct: 74 EPDEASCRRHYDSRPERFRDGEWVEADHILFQVTPRVPLDALREIAAQTLALVRGDPSTF 133 Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354 + A S + G + + + ++F+ + G ++ +G I V Sbjct: 134 PEHARALSNCPSGANGGRLGRVFRGETAPEFERALFAAQQDGVLPHLLETRYGLHIVRVL 193 Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391 P + F V+ DIA + A ++ + Y L Sbjct: 194 ERCPGTRLPFDAVRGDIARALASA-ARDRAWKQYASL 229 >gi|261823433|ref|YP_003261539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium wasabiae WPP163] gi|261607446|gb|ACX89932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium wasabiae WPP163] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ ++ A + L+KG F +LA++ S LG F K + + ++F Sbjct: 9 HILVDTEQLASDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMV-PAFDKAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY + V Sbjct: 68 SCELLKP---FGPVKTQFGYHVIKV 89 >gi|301021433|ref|ZP_07185457.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] gi|300398069|gb|EFJ81607.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +K A E +K G F +LA++ S LG F + + + +F Sbjct: 9 HILVKEEKLALELLDQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67 Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353 S + T +H FGY I V Sbjct: 68 SCPVL-EPTGPLHTQFGYHIIKV 89 >gi|300714778|ref|YP_003739581.1| peptidyl-prolyl cis-trans isomerase C [Erwinia billingiae Eb661] gi|299060614|emb|CAX57721.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia billingiae Eb661] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPDVSLADSIF 330 ++ +K A + L+KG F +LA++ S LG F + + + +F Sbjct: 9 HILVKEEKLAQDILAELEKGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMV-PAFDKVVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L +H FGY I V Sbjct: 68 SCPLIVP---YGPLHTQFGYHIIKV 89 >gi|239637879|ref|ZP_04678840.1| foldase protein PrsA [Staphylococcus warneri L37603] gi|239596442|gb|EEQ78978.1| foldase protein PrsA [Staphylococcus warneri L37603] Length = 330 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 76/203 (37%), Gaps = 42/203 (20%) Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQ 288 KI++S+ E++ + ++ + K+A + + Sbjct: 124 ELLNDKIKVSDKEIKDN------------TKKASHILIKVKSKDSDKEGLSDKKAKQKAE 171 Query: 289 SLKK-----GKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339 ++K KF ++A+ ++ + D SLG +K + + S ++F L K+G+ T Sbjct: 172 EIQKEVSKDPSKFGEIAKKESMDKSTAKKDGSLGYVTKGQMME-SFDKALFKL-KEGEVT 229 Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS---EKVKEDYKRLEEFLA 396 V+ +GY I F K ++ +++ K + + + YK + + Sbjct: 230 KVVKTDYGYHIIK-----ADKETDFNSEKSNLKSKILEQKIQKDPKLLTDAYKEILDEYK 284 Query: 397 LGTSMDEISRREKIVSIDLPLVD 419 + +I + +D + Sbjct: 285 VDYKDRDIKKAVDDTILDPDKIK 307 >gi|331701588|ref|YP_004398547.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929] gi|329128931|gb|AEB73484.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929] Length = 298 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 44/231 (19%) Query: 207 DPSNAVLTQWFEKYKDNY--------------RAPEYKRISYILFDVHEKEKKIEISNDE 252 D ++ + F KYK Y + I L + ++I++ + Sbjct: 72 DVKDSQVNSEFAKYKKQYGSSFNSVLQQNGMTASQLKDSIRSNLLLKQAVKDNVKITDAQ 131 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ +++ + K TV Q++ + A++ LK GK F LA++ + + Sbjct: 132 LETQFKSYQPK------VTVNQILVSKKSTAEKVISELKDGKSFSSLAKKYSTDTATKNK 185 Query: 313 G-----SFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGSFGYVIAH-VSNIKPSFTVSFQ 365 G + D + + F L K G++T + +GY + V++ + Sbjct: 186 GGRIAAFDNTNTSLDANFKKAAFKL-KNGEYTKTPVKTQYGYQVIQMVNHPSKGTWKQHE 244 Query: 366 -EVKKDI---------------ANQMRITKASEKVKEDYKRLEEFLALGTS 400 E+K I + ++ K + + K+ L ++L+ +S Sbjct: 245 SELKDQIVTSKMSDSNTLHSVVSKVLKKGKVTIQDKDLQNVLSDYLSTSSS 295 Score = 60.8 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 43/197 (21%) Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69 + W+ I L + + F + + GS TV + K+ S++ +S Sbjct: 6 KKWL--IVLAGIMMSFTL--------AACGSKTVATTNGGKITESAYYSS---------- 45 Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129 +S K++L ++ L+ + G + +V E A+ + + Sbjct: 46 ----------LKSTSSGKQVLQQMILNKVLE---KQYGKDVKDSQVNSEFAK---YKKQY 89 Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189 F S L + G+ + D L ++ ++ L+ + Y Sbjct: 90 GS----SFNSVLQQNGMTASQLKDSIRSNLLLKQ---AVKDNVKITDAQLETQFKSYQPK 142 Query: 190 RSVDYIVLNNRHVPAIA 206 +V+ I+++ + Sbjct: 143 VTVNQILVSKKSTAEKV 159 >gi|290513194|ref|ZP_06552556.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55] gi|289774405|gb|EFD82411.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +K A + + LK G F +LA++ S LG F + + + +F Sbjct: 9 HILVKEEKLALDLLEQLKGGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67 Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIK 357 S + + T +H FGY I V K Sbjct: 68 SCPEL-EPTGPLHTQFGYHIIKVLYRK 93 >gi|78185901|ref|YP_373944.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM 273] gi|78165803|gb|ABB22901.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM 273] Length = 439 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 18/152 (11%) Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLV------FP 278 A E + I +K + I E+ + Y N+ PE +V Q++ Sbjct: 132 ADELRGQQMIETLKRKKFSSVTIGYGEVMSFYRSNQASMPNLPEEVSVSQILKFPGVNSA 191 Query: 279 NQKEADEAFQSLKKGK-----KFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSI 329 ++ EA + Q ++K + F +LA + G + LG + + D+ Sbjct: 192 SKAEALKKIQEIQKKQGSGFLSFEELARRYSMDPGSAPLGGDLGFVQRGELVKP-FEDAA 250 Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 ++L K G + ++ +GY I + S Sbjct: 251 YAL-KDGHVSGIVETRYGYHIIQRLGREGSSI 281 Score = 48.4 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 60/454 (13%), Positives = 118/454 (25%), Gaps = 83/454 (18%) Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64 ++KA + A I ++++ P +V V VG + + S + +EL Sbjct: 1 MKKALHSVFAVIAVLLIMPP-------TLSAAVVADKVVAVVGSEVIFKSELDS---REL 50 Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124 Q G L ILDN++ + + + D V Sbjct: 51 MTRMQYPGLK------DEASLRSTILDNIIDQKIILTKAKIDSVSIDENAVTSM--AVDR 102 Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL------ 178 F +F+ R G + L ++ S + Sbjct: 103 FRQLSGRFTSK--EDMERRLGRSVDAIRRDLADELRGQQMIETLKRKKFSSVTIGYGEVM 160 Query: 179 ----LDQAK--RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232 +QA E + + + A+ + + +K + + E Sbjct: 161 SFYRSNQASMPNLPEEVSVSQILKFPGVNSASKAEA-LKKIQEIQKKQGSGFLSFEELAR 219 Query: 233 SYILF-----------------------DVHEKEKKIEISN-DELQAEYEKNKEKYFSPE 268 Y + D K +S E + Y + Sbjct: 220 RYSMDPGSAPLGGDLGFVQRGELVKPFEDAAYALKDGHVSGIVETRYGYHIIQRLGREGS 279 Query: 269 IRTVEQLVFP------NQKEADEAFQSLK----KGK-KFIQLAEEQGKSLSDISLGSFS- 316 V ++ + EA +++ GK F +A SLG Sbjct: 280 SIHVRHILVAFERSGSDDGEAAAFLDAIRSKVLAGKVDFATMAGSYSDDPVSASLGGLVL 339 Query: 317 ---------KEYIPDVSLADSIFSLAKKGDFTPVI-----HGSFGYVIAHVSNIKPSFTV 362 + L D + +L GD + G + I +++ + Sbjct: 340 ASGTAGKYLDPSMLRPQLRDIVNALRTPGDISRPTKITPPKGDPFFGIFRLNDRIVPHVL 399 Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 ++ + K E K L + + Sbjct: 400 DPEKDYPLLEQLALDNKKQELFDAWVKGLHKEVY 433 >gi|325954018|ref|YP_004237678.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM 16922] gi|323436636|gb|ADX67100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM 16922] Length = 448 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 84/285 (29%), Gaps = 45/285 (15%) Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153 ++ Q + +E V EI + +G+ K+ + Sbjct: 15 IAQGLFAQTHKANKIEGIAAVVGDEIVLDS---------DVERDFQTAKLQGMEVKDRCE 65 Query: 154 HYTKMLSRTDVVG-------MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206 ML ++ + V L Q +RF + + V++ A Sbjct: 66 FLNNMLLEKVLIDRAKQDTLVVVTNDEVQRTLKGQIERF-TQQIGSEKAVIDYFGFKTKA 124 Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-F 265 + L + Y ++ + +E++ +E++K + Sbjct: 125 EL-ENELQYYIRDN------------IYAREKRERVVSGLDATPEEVRMFFEEHKTELPD 171 Query: 266 SPEIRTVEQLVF------PNQKEADEAFQSLKK----GKKFIQLAEEQGKSLSDISLGS- 314 + ++ ++ N+++ + + +KK G F A + + G Sbjct: 172 VKDEYSISHIILYPEIDPENEQKVIDELKQIKKDVEEGSSFATKAILYSEDPGSATNGGQ 231 Query: 315 --FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 K + F+L + G + FGY I + K Sbjct: 232 YLKVKRGMMVKEFDAVAFNLDE-GQVSEPFKTDFGYHIIQLEKRK 275 >gi|319892874|ref|YP_004149749.1| Foldase protein PrsA precursor [Staphylococcus pseudintermedius HKU10-03] gi|317162570|gb|ADV06113.1| Foldase protein PrsA precursor [Staphylococcus pseudintermedius HKU10-03] gi|323464093|gb|ADX76246.1| foldase protein PrsA [Staphylococcus pseudintermedius ED99] Length = 318 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 78/229 (34%), Gaps = 54/229 (23%) Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRA------------PEYKRISYILFDVHEKEKK 245 + I ++ + ++ K + + E +++ + + +K Sbjct: 75 DKVDQKQIDKETDEEIEKY--GGKKQFESLLKQQGMTIDDYKEQRKL--VSYQKELLNEK 130 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---------------QSL 290 +++S+ E++ + ++ +++ D+ + L Sbjct: 131 VKVSDKEIK------------ESTKKASHILIKVKQDKDDKEGLSDKDAKKKIDEIKEKL 178 Query: 291 KKG-KKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346 K K F ++A+E+ + SLG K + +++F L K+G + V+ + Sbjct: 179 DKNPKDFDKIAKEESMDSTKDKNGSLGYVIKGQMVKP-FEEALFKL-KEGQISDVVKTEY 236 Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395 GY I F + K + ++ K E K ++ L Sbjct: 237 GYHIIR-----ADKEDDFDKEKSKLKEKIIQNKLQEDPKILTDAYKDLL 280 >gi|242243062|ref|ZP_04797507.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis W23144] gi|242233520|gb|EES35832.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis W23144] Length = 322 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283 E K++S K+ +S+ E++ + ++ + ++ Sbjct: 111 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 156 Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327 ++ + ++K KF ++A+++ S D SLG K + D S Sbjct: 157 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 215 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 ++F L K+G+ + V+ +GY I F K +I ++ K +K K Sbjct: 216 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 269 Query: 388 YKRLEEFL 395 +E L Sbjct: 270 TDAYKELL 277 >gi|83647099|ref|YP_435534.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] gi|83635142|gb|ABC31109.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC 2396] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS 324 + ++ ++ + ++ + ++ G F LA+E + S LG F + Sbjct: 2 ARASARHILVNSEDQCNDLKKQIEDGADFAALAKEHSQCPSGRNGGELGEFGPGQMVK-E 60 Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A+ G + FGY + V+ Sbjct: 61 FDQVVFS-AEVGTVQGPVKTQFGYHLLEVTKRT 92 >gi|221198560|ref|ZP_03571605.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2M] gi|221207789|ref|ZP_03580796.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2] gi|221172286|gb|EEE04726.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2] gi|221181011|gb|EEE13413.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2M] Length = 262 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 18/171 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKF 296 E + + Y ++ ++ +I ++F ++ A+ A + F Sbjct: 86 EPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADVVAAPDTF 145 Query: 297 IQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 +A S SLG + ++F G +++ FG+ I + Sbjct: 146 DAVARASSNCPSAQLGGSLGQLLRGDTV-PEFEAALFDTDGLGVLPKLVNTRFGFHIVRI 204 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404 + P TV F V IA + + ++ Y + LA G ++ + Sbjct: 205 DHRVPGDTVPFDAVAAQIAAHL-TARVRQRAMRQYVAI---LAGGAHIEGV 251 >gi|159162312|pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G +F ++A + + + LG ++ + ++ Sbjct: 12 KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 70 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L G P + FGY I V K Sbjct: 71 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104 >gi|206580899|ref|YP_002241159.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342] gi|206569957|gb|ACI11733.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 9/85 (10%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 + +K A E L++G F LA+ K S LG F + + ++F Sbjct: 9 HIQVKEEKLAHEILAKLERGISFDHLAKRYSKCPSGRHGGDLGEFPQGTMVGP-FDQAVF 67 Query: 331 S--LAKKGDFTPVIHGSFGYVIAHV 353 S L K + FGY I V Sbjct: 68 SCPLLKP---YGPVKTKFGYHIIKV 89 >gi|329962620|ref|ZP_08300568.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057] gi|328529651|gb|EGF56549.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057] Length = 455 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 51/501 (10%), Positives = 128/501 (25%), Gaps = 100/501 (19%) Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI-GFVVN 76 VVLF L+ G + V VG + + S + +S G + Sbjct: 9 FVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEA------RMSALFDGRKFD 62 Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI--ARSPLFHGKDNKFSH 134 + + + + +E V + + ++ Sbjct: 63 RDPYCVIPEEIAV------QKLFLHQAALDSIEVSENEVIQRVDYMTNMYIANIGSREKM 116 Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194 + + ++ + + + ++ + L + VG Sbjct: 117 EEYFNKTSSQ--IRETLRENAREGLKVQKMQQKLVG------------------------ 150 Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYR--APEYKRISYILFDVHEKEKKIEISNDE 252 + A + ++F+ + P + I ++IE Sbjct: 151 ----------EIKVTPAEVRRYFKNRPQDSIPYIPTQVEVQIITLQPKIPLEEIEDVKKR 200 Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312 L+ + KG+ F LA + Sbjct: 201 LREY------------------------------TDRINKGESFSMLARMYSEDRGSAMR 230 Query: 313 GS---FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 G FS + D + A+ F+L + ++ +G+ I + + + + K Sbjct: 231 GGEIEFSGRGMLDPAYANVAFNLQDPNKVSKIVESEYGFHIIQLIEKRGDRIKTRHILLK 290 Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429 + +T A+ ++ + + ++K + L+ + E Sbjct: 291 PHVPEEALTAANARLDSIADDIRNNKFSFEEAASVLSQDKDTRNNHGLLPNPNNNTSKFE 350 Query: 430 VAAIPYKEQL---------LFRVFGKDDPLSKDHTVALPD-----GSYMWVQIKESIPAR 475 + +P + + F + + + + + Sbjct: 351 MQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRTNGHKATIADDYQNLK 410 Query: 476 DRKLEEVLTDVKKDWKTVKTA 496 + LE+ +V W K Sbjct: 411 EIVLEKRRDEVLDKWIREKQK 431 >gi|282875776|ref|ZP_06284643.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis SK135] gi|281294801|gb|EFA87328.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis SK135] gi|329724902|gb|EGG61405.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis VCU144] Length = 325 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283 E K++S K+ +S+ E++ + ++ + ++ Sbjct: 114 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 159 Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327 ++ + ++K KF ++A+++ S D SLG K + D S Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 ++F L K+G+ + V+ +GY I F K +I ++ K +K K Sbjct: 219 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 272 Query: 388 YKRLEEFL 395 +E L Sbjct: 273 TDAYKELL 280 >gi|148977503|ref|ZP_01814092.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium SWAT-3] gi|145963298|gb|EDK28564.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium SWAT-3] Length = 431 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 67/372 (18%), Positives = 122/372 (32%), Gaps = 88/372 (23%) Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105 V + S S K + G + S+ LD+++L+ L+ Q E Sbjct: 34 VNEGVILQSDIDTSMKTLRANAKKS-GQTLPSQDV----LDEQVLEKLIIDTIQTQEAER 88 Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165 IG+ D R+ I KDN + + + +A EG++ + R V Sbjct: 89 IGVRIDDARLDQAIEGI----AKDNNQTVEQLTASVAEEGLSYNAF---------REQVR 135 Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNY 224 R R ++ + ++ I A +NA + Sbjct: 136 KEIAAS----------EARNALVRRRINILPAEVDNLADILAQETNATVQ---------- 175 Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284 +I +I ++ + + +EL + +A Sbjct: 176 -----YKIGHIQLRFNDDQ-----TKEEL--------------------------EAQAK 199 Query: 285 EAFQSLKKGKKFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 E + L GK F +A K +L G KE +P AD I + KG Sbjct: 200 ELVEELNSGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMP-TIFADQI-KMQNKGSIIGP 257 Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKD---IANQ--MRITKASEKVKEDYKRLEEFLA 396 G+ I + ++K TV+ EV I + A E+++E +R+ A Sbjct: 258 FRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDGAKEQLEEITRRVN---A 314 Query: 397 LGTSMDEISRRE 408 S +++++ Sbjct: 315 GEASFGDMAQQY 326 >gi|118089325|ref|XP_420136.2| PREDICTED: similar to Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Gallus gallus] Length = 125 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ A EA + LK G +F ++A + + + LG ++ + ++ Sbjct: 33 KVRHILCEKHGRAMEAMEKLKAGVRFSEVASQYSEDKARQGGDLGWMTRGSMVGP-FQEA 91 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L K P + FGY I V K Sbjct: 92 AFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 125 >gi|119945608|ref|YP_943288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] gi|119864212|gb|ABM03689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas ingrahamii 37] Length = 93 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328 ++ +++ + Q ++ G F LA++ S +LG F + Sbjct: 6 ARHILVSSEESCLDIKQQIEAGTDFADLAKKHSSCPSGAQGGALGEFGPGMMV-PEFDAV 64 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 +FS A G + FGY + V++ + Sbjct: 65 VFS-ADVGSVQGPVKTQFGYHLLEVTSRQ 92 >gi|27468439|ref|NP_765076.1| hypothetical protein SE1521 [Staphylococcus epidermidis ATCC 12228] gi|46396902|sp|Q8CNR4|PRSA_STAES RecName: Full=Foldase protein prsA; Flags: Precursor gi|27315986|gb|AAO05120.1|AE016749_66 prsA [Staphylococcus epidermidis ATCC 12228] Length = 325 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 41/188 (21%) Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---- 283 E K++S K+ +S+ E++ + ++ + ++ Sbjct: 114 EQKKLSAY--QKQLLLDKVNVSDKEIKEN------------SKKASHILIKVKSKSSDKE 159 Query: 284 -----------DEAFQSLKKG-KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLAD 327 ++ + ++K KF ++A+++ S D SLG K + D S Sbjct: 160 GLSDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVD-SFEK 218 Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387 ++F L K+G+ + V+ +GY I F K +I ++ K +K K Sbjct: 219 ALFKL-KEGEVSKVVKTDYGYHIIK-----ADKETDFNSEKSNIKQKLIEEKVQKKPKLL 272 Query: 388 YKRLEEFL 395 +E L Sbjct: 273 TDAYKELL 280 >gi|255320532|ref|ZP_05361713.1| chaperone SurA [Acinetobacter radioresistens SK82] gi|255302504|gb|EET81740.1| chaperone SurA [Acinetobacter radioresistens SK82] Length = 436 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 50/393 (12%), Positives = 115/393 (29%), Gaps = 64/393 (16%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99 V V + S I + + + V L+K+ LD L+ Sbjct: 31 DEVVAIVDNGVILKSDLIQGVAELKHQLETQKREVPP-----QAFLEKQALDQLILRQAQ 85 Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI---DHYT 156 + + ++ D + + + + + + F +L + Y + Sbjct: 86 LEQVRRYNVKPDEKSLNEAVMKVA---SQSGTKTLEAFQQKLDA--MAPGTYESLRNRIA 140 Query: 157 KMLSRTDV-VGMFVGGMRPSNLLLD------QAKRFYFENRSVDYIVLNNRHVPAIADPS 209 + L+ + + ++ S+ ++ Q + V + + + S Sbjct: 141 EDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQAALGSQVHVIHARITPKDKQTANVES 200 Query: 210 NAV--------------LTQWFEKYKDN-------YRA----PEYKRISYILFDVHEKEK 244 A +++ + K +R+ P V + + Sbjct: 201 VAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMGFRSLADIPAELAARVSALPVGQTTE 260 Query: 245 KIEISN--DELQAEYEKNKEKYFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG 293 I + L+ K E+ ++ + D + LK G Sbjct: 261 LIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQPSEVVSPENAKHMIDNIYNRLKAG 320 Query: 294 KKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349 + F LA + G + SLG S + + + S G + FG+ Sbjct: 321 EDFTVLASTFSTDTGSARDGGSLGWVSPGVMV-PEFEEKMKS-TPVGQVSAPFQTQFGWH 378 Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382 I V++ + +E ++ +A Q+ + E Sbjct: 379 ILQVTDTRQQDMT--EEYQERMARQILGERQFE 409 >gi|332861031|ref|XP_001139476.2| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like [Pan troglodytes] Length = 94 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G +F ++A + + + LG ++ + ++ Sbjct: 2 KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGP-FQEA 60 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L G P + FGY I V K Sbjct: 61 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 94 >gi|330817346|ref|YP_004361051.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] gi|327369739|gb|AEA61095.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia gladioli BSR3] Length = 325 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 13/194 (6%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRIS-YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 A + ++ E + + F +H++ + +++ +++A+Y++ E Sbjct: 125 QAAVKAHYDTQAQVLAVVEQAKTTAMTEFWLHDQVRPASVTDAQVRAKYDEVVGLLGDTE 184 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG---KSLSDISLGSF--------SK 317 ++ +V ++ AD A L++G F QLA + + +L Sbjct: 185 LKPSA-IVLKDRAAADAALAQLERGADFAQLARQLSQGPGAQQGGALNWVSFRLPIPEGG 243 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377 E LA ++ +L + G I + GY I V + + + +F +VK + Q+ Sbjct: 244 EQNWPQPLARALVALPRGGMSREPIEAAGGYWILRVDDKRATRIPAFDDVKAALRQQLET 303 Query: 378 TKASEKVKEDYKRL 391 E L Sbjct: 304 AALQRATIEVVVDL 317 >gi|293605263|ref|ZP_06687649.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] gi|292816319|gb|EFF75414.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC 43553] Length = 267 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 17/174 (9%) Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSL-KKGKKFIQLAEEQ 303 + Y N +++ E+ + ++F + A+ Q L +F ++A Q Sbjct: 93 RRFYHANPQRFMVGELIEADHILFQVTPDVNLDMLRAHANTVLQDLLADPSRFAEVARAQ 152 Query: 304 G---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 + +LG + ++F+L G ++ G I V+ Sbjct: 153 SNCPSAAVGGNLGQLGRGDTV-PEFERAVFALPSGGLLPQLLQTRHGLHIVRVTRRIEGR 211 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRL--EEFLALGTSMDEISRREKIVS 412 + ++ V + IA + + + + Y +L E+ G ++ + Sbjct: 212 MLPYEHVAQQIAAAL-SSMSQDTAWRQYTKLLVEQADVQGIDLESSEADRVVAG 264 >gi|291238039|ref|XP_002738936.1| PREDICTED: CG11858-like [Saccoglossus kowalevskii] Length = 131 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G++F ++A + + + LG ++ + D+ Sbjct: 39 KVRHILCEKHSKVMEAMEKLKAGERFNEVATKYSEDKARQGGDLGWMTRGSMVGP-FQDA 97 Query: 329 IFSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357 F+L+ P + FGY I + K Sbjct: 98 AFALSPSTTGNPVYTDPPVKTKFGYHIIMIEGKK 131 >gi|113931156|ref|NP_081457.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Mus musculus] gi|82905251|ref|XP_897983.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like [Mus musculus] gi|20139149|sp|Q9CWW6|PIN4_MOUSE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; AltName: Full=Parvulin-14; Short=Par14; AltName: Full=Peptidyl-prolyl cis-trans isomerase Pin4; Short=PPIase Pin4; AltName: Full=Rotamase Pin4 gi|12845707|dbj|BAB26863.1| unnamed protein product [Mus musculus] gi|111600200|gb|AAI19358.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Mus musculus] gi|111601005|gb|AAI19356.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Mus musculus] gi|123229763|emb|CAM24632.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 4 (parvulin) [Mus musculus] gi|148682182|gb|EDL14129.1| mCG116634 [Mus musculus] gi|149042164|gb|EDL95871.1| rCG36372, isoform CRA_a [Rattus norvegicus] Length = 131 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G +F ++A + + + LG ++ + ++ Sbjct: 39 KVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 97 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L G P + FGY I V K Sbjct: 98 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131 >gi|134283497|ref|ZP_01770197.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 305] gi|167723620|ref|ZP_02406856.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei DM98] gi|134245246|gb|EBA45340.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 305] Length = 265 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%) Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQS-LKKGKKF 296 E + D + Y + ++ +I ++F ++EA+ L + + F Sbjct: 89 EPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATLARVLAEPQTF 148 Query: 297 IQLAEEQG---KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 A E + SLG + ++F G +++ FG+ I + Sbjct: 149 EARARELSNCPSAQVGGSLGQLLRGDSV-PEFDAAVFDTTDSGVLPRLVNTRFGFHIVRI 207 Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405 P V F V +IA + A + ++ LA G ++ ++ Sbjct: 208 ERRVPGDPVPFDAVAAEIAAFL----AERVRHKAIQQYVTILASGARIEGVA 255 >gi|291279157|ref|YP_003495992.1| hypothetical protein DEFDS_0758 [Deferribacter desulfuricans SSM1] gi|290753859|dbj|BAI80236.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 325 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 17/194 (8%) Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKK----IEISNDELQAEYEKNKEKYFSPEIR 270 ++ + K+N + +Y+ +V + K+ +I L+ Y+ N++ + + E Sbjct: 123 EYAKALKENGITEKILYETYMDLNVKDIIKEKIFSEKIEPKVLKEYYKNNQQMFSTGESY 182 Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQ------LAEEQGKSLSDISLGSFSKEYIP--- 321 V+ + + +A E + KK L EE K+ G + ++ Sbjct: 183 VVKNCLI--KADARELKAKEMEEKKKEAENLLKMLKEEDEKAWQKCDKGIYPEQDTVYKF 240 Query: 322 -DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 IF L KKGDF +GY+I V +IKPS + F E+K +I M++ K Sbjct: 241 SKNYPIKEIFKL-KKGDFGGPYRNIYGYLIVKVIDIKPSEVLPFDEIKNEIERLMKLKKF 299 Query: 381 SEKVKEDYKRLEEF 394 + K KR ++ Sbjct: 300 KDYYKNLLKRAKDE 313 >gi|297585156|ref|YP_003700936.1| SurA domain-containing protein [Bacillus selenitireducens MLS10] gi|297143613|gb|ADI00371.1| SurA domain protein [Bacillus selenitireducens MLS10] Length = 272 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 5/161 (3%) Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100 V V +++ F+ +++ + ++ + + E + + D++V+ L Sbjct: 81 DVVAEVNGEEISQEEFLATYEPQFQQMAMQ--SQMTGEEVDEAQIRDMVADSMVNNTLLI 138 Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160 Q + G+EA + + ++ S D F+ L +G E +D + Sbjct: 139 QEADSQGIEATDEDIEQLLTELAQ---QNQMESSDQFLQALEEQGTPEDVVMDQVEMQVK 195 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201 ++ G + S+ +++ + L Sbjct: 196 VDQLIANEAGEIDVSDAEVEEMYAQLEAQQEQSGGELPPLD 236 >gi|291387204|ref|XP_002710178.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)-like [Oryctolagus cuniculus] Length = 131 Score = 70.0 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G KF ++A + + + +LG ++ + ++ Sbjct: 39 KVRHILCEKHGKIMEAMEKLKSGMKFSEVAAQYSEDKARQGGNLGWMTRGSMVGP-FQEA 97 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L G P + FGY I V K Sbjct: 98 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131 >gi|167589752|ref|ZP_02382140.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia ubonensis Bu] Length = 310 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 16/194 (8%) Query: 210 NAVLTQWFEKYKDNYRAPEYKR-ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268 A Q ++ A E + ++ + ++ K +++ +++A Y+ E Sbjct: 110 QAAQKQHYDTKPQVVAAVEQAKALAMTQAYLRDQVKPAPVTDADVKARYDAIVATLGENE 169 Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF-----------SK 317 + + + A + +KG+ F +LA++ K + G+ Sbjct: 170 YKPSA-IAVNDADTAKQLIARFRKGEDFAKLAQDNSKGPAAAQGGALNWISFKTPITAGN 228 Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM-- 375 LA+++ L + G + Y I V + +P+ +F + K + Q+ Sbjct: 229 TQNWPQPLAEALVKLPQGGLTRDPVQVGDAYWILRVDDKRPTQVPAFDQAKDMLRQQLEQ 288 Query: 376 -RITKASEKVKEDY 388 + KA+ +V D Sbjct: 289 VAMEKATAQVVADL 302 >gi|317050626|ref|YP_004111742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum indicum S5] gi|316945710|gb|ADU65186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum indicum S5] Length = 319 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 54/367 (14%), Positives = 112/367 (30%), Gaps = 80/367 (21%) Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD---NLVSG 96 V + + K+ + ++ + E+AR + + +L+ V Sbjct: 28 DGIAAVVNGVPITIQEVRQANKEHIERATR----GLADEQAREATM-QMLLEGTHQKVEQ 82 Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156 L+ + + +V I + +N S S LA EGI+ + Y Sbjct: 83 MLLEDYGRRNRIFISAQQVEEAINQVAA----NNNVSRSALESMLADEGISMESYRRDIR 138 Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216 L + + S L + A R Sbjct: 139 VQLLVMQIGQKLSQEISVSELEVVSAFR-------------------------------- 166 Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276 + ++ Y + ++L + K I E + + + Sbjct: 167 ----EGRFQRIPYADVGHVLIALDGKSDDQAIRIAE------------------RLHERI 204 Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 E +EA + +G + G + D+ G +E L +IFS+ +KG Sbjct: 205 ISGDIEFEEAARQYSEGPNAAE-----GGLMKDVRRGRLLRE------LDQAIFSM-EKG 252 Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396 T V S GY I H+ ++ + +S ++ + K +++ L + Sbjct: 253 QTTLV-RSSVGYHILHLYDLGFNREMSDEDF-SRTRAALLREKQERRLQGLMDELRDSAV 310 Query: 397 LGTSMDE 403 + ++ E Sbjct: 311 IQYNLKE 317 >gi|119774802|ref|YP_927542.1| cell wall hydrolase/autolysin [Shewanella amazonensis SB2B] gi|119767302|gb|ABL99872.1| cell wall hydrolase/autolysin [Shewanella amazonensis SB2B] Length = 92 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADS 328 ++ ++EA++ + KG+ F +LA++ S LG F + + D Sbjct: 6 ARHILVKTREEAEKLKARIDKGEDFGKLAKQYSLCPSKRRSGDLGEFGPGQMVK-AFDDV 64 Query: 329 IFSLAKKGDFTPVIHGSFGYVIAH 352 +F + + FG+ + Sbjct: 65 VFKKPIL-EVHGPVKTRFGFHLIQ 87 >gi|295095199|emb|CBK84289.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 93 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIF 330 ++ +K A + + +K G F +LA++ S LG F + + + +F Sbjct: 9 HILVKEEKLAQDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVF 67 Query: 331 SLAKKGDFTPVIHGSFGYVIAHV 353 S + T +H FGY I V Sbjct: 68 SCPVL-EPTGPLHTQFGYHIIKV 89 >gi|281338941|gb|EFB14525.1| hypothetical protein PANDA_015066 [Ailuropoda melanoleuca] Length = 95 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADS 328 V ++ + EA + LK G +F ++A + + + LG ++ + ++ Sbjct: 3 QVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMVGP-FQEA 61 Query: 329 IFSLAKKGD-----FTPVIHGSFGYVIAHVSNIK 357 F+L G P + FGY I V K Sbjct: 62 AFALPVSGLDKPVFTDPPVKTKFGYHIIMVEGKK 95 >gi|28870204|ref|NP_792823.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv. tomato str. DC3000] gi|28853450|gb|AAO56518.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv. tomato str. DC3000] Length = 93 Score = 69.6 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLAD 327 T ++ ++++ DE ++ G F ++A+ S LGSF + Sbjct: 5 TARHILVSSEEKC